Query 025154
Match_columns 257
No_of_seqs 261 out of 1697
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0289 DapB Dihydrodipicolina 100.0 2.5E-66 5.4E-71 462.0 22.8 211 34-253 1-235 (266)
2 TIGR00036 dapB dihydrodipicoli 100.0 2.8E-57 6.1E-62 409.3 25.3 212 35-253 1-236 (266)
3 PRK00048 dihydrodipicolinate r 100.0 1.7E-52 3.7E-57 376.3 23.5 205 35-253 1-226 (257)
4 TIGR02130 dapB_plant dihydrodi 100.0 2.2E-52 4.7E-57 377.2 22.3 203 36-253 1-235 (275)
5 PLN02775 Probable dihydrodipic 100.0 6E-52 1.3E-56 375.9 22.7 214 27-253 3-246 (286)
6 PF01113 DapB_N: Dihydrodipico 100.0 3.4E-33 7.3E-38 225.6 13.6 121 36-165 1-124 (124)
7 PF05173 DapB_C: Dihydrodipico 99.9 9.7E-24 2.1E-28 172.6 7.6 86 168-253 1-102 (132)
8 PRK13303 L-aspartate dehydroge 99.6 3.7E-15 8E-20 134.8 15.0 127 35-172 1-129 (265)
9 PF01408 GFO_IDH_MocA: Oxidore 99.6 6.4E-15 1.4E-19 116.1 12.5 116 36-161 1-118 (120)
10 PRK13304 L-aspartate dehydroge 99.5 7E-13 1.5E-17 119.9 15.3 126 35-172 1-129 (265)
11 PRK11579 putative oxidoreducta 99.4 1.6E-12 3.5E-17 121.0 14.4 145 34-192 3-151 (346)
12 COG0673 MviM Predicted dehydro 99.4 2.9E-12 6.3E-17 117.5 14.8 152 34-196 2-158 (342)
13 PRK08374 homoserine dehydrogen 99.4 4.5E-12 9.8E-17 118.4 12.6 137 35-176 2-161 (336)
14 PRK13302 putative L-aspartate 99.4 9.9E-12 2.2E-16 112.9 13.9 125 35-172 6-132 (271)
15 PRK10206 putative oxidoreducta 99.3 9E-12 1.9E-16 116.4 12.3 144 35-191 1-150 (344)
16 PRK06270 homoserine dehydrogen 99.3 3.8E-11 8.2E-16 112.4 13.5 140 35-179 2-167 (341)
17 TIGR01921 DAP-DH diaminopimela 99.3 6.4E-11 1.4E-15 110.1 13.8 154 35-202 3-163 (324)
18 TIGR01761 thiaz-red thiazoliny 99.3 7.5E-11 1.6E-15 110.6 13.4 127 35-176 3-134 (343)
19 PLN02819 lysine-ketoglutarate 99.2 1.2E-09 2.6E-14 114.5 18.2 136 34-179 568-721 (1042)
20 PRK06349 homoserine dehydrogen 99.2 2.5E-10 5.4E-15 109.8 11.9 130 35-175 3-142 (426)
21 PF03447 NAD_binding_3: Homose 99.2 7.2E-11 1.6E-15 93.5 6.6 110 43-161 1-116 (117)
22 PRK04207 glyceraldehyde-3-phos 99.2 1.9E-10 4.2E-15 107.7 10.3 96 35-138 1-110 (341)
23 PRK13301 putative L-aspartate 99.1 1.7E-09 3.7E-14 97.9 15.2 125 35-172 2-130 (267)
24 KOG2741 Dimeric dihydrodiol de 99.1 4.2E-09 9.1E-14 97.9 15.4 155 32-198 3-165 (351)
25 COG1712 Predicted dinucleotide 98.9 1.9E-08 4.1E-13 88.9 13.7 122 36-169 1-125 (255)
26 TIGR03215 ac_ald_DH_ac acetald 98.9 2.1E-08 4.6E-13 92.0 14.3 127 35-172 1-132 (285)
27 COG3804 Uncharacterized conser 98.9 3.2E-08 6.8E-13 90.0 13.4 126 35-168 2-135 (350)
28 TIGR03855 NAD_NadX aspartate d 98.9 2.1E-08 4.6E-13 89.2 11.0 103 60-172 1-105 (229)
29 PRK08300 acetaldehyde dehydrog 98.9 3.5E-08 7.6E-13 91.1 12.5 141 34-192 3-153 (302)
30 COG4091 Predicted homoserine d 98.8 1.3E-08 2.8E-13 95.0 9.4 123 33-162 15-156 (438)
31 PTZ00187 succinyl-CoA syntheta 98.8 4.3E-08 9.3E-13 91.0 11.9 124 33-170 27-152 (317)
32 PRK06392 homoserine dehydrogen 98.8 7.1E-08 1.5E-12 90.1 12.9 134 36-175 1-154 (326)
33 PF01118 Semialdhyde_dh: Semia 98.8 6.9E-08 1.5E-12 77.1 10.2 96 37-139 1-99 (121)
34 PRK00436 argC N-acetyl-gamma-g 98.7 1.3E-07 2.9E-12 88.6 10.3 101 34-140 1-102 (343)
35 COG0074 SucD Succinyl-CoA synt 98.7 1.8E-07 3.8E-12 85.1 10.4 114 36-164 9-123 (293)
36 COG1748 LYS9 Saccharopine dehy 98.6 4.3E-07 9.4E-12 86.5 12.3 149 35-192 1-154 (389)
37 PLN00125 Succinyl-CoA ligase [ 98.6 1E-06 2.2E-11 81.4 14.1 120 35-170 12-133 (300)
38 TIGR01019 sucCoAalpha succinyl 98.6 1.3E-06 2.8E-11 80.2 13.7 119 35-169 6-125 (286)
39 PF02629 CoA_binding: CoA bind 98.5 1E-06 2.2E-11 67.9 10.4 89 34-136 2-92 (96)
40 PRK05678 succinyl-CoA syntheta 98.5 2.1E-06 4.5E-11 79.1 14.1 117 35-169 8-127 (291)
41 PRK06813 homoserine dehydrogen 98.5 1.6E-06 3.5E-11 81.6 13.1 137 35-175 2-160 (346)
42 PF03435 Saccharop_dh: Sacchar 98.5 9.5E-07 2.1E-11 83.3 11.2 132 38-180 1-141 (386)
43 PF13380 CoA_binding_2: CoA bi 98.4 3.9E-06 8.3E-11 67.0 11.1 110 37-170 2-114 (116)
44 PF03446 NAD_binding_2: NAD bi 98.4 3.4E-06 7.5E-11 70.6 10.7 113 35-163 1-119 (163)
45 TIGR00978 asd_EA aspartate-sem 98.3 7E-06 1.5E-10 76.9 10.7 94 36-135 1-102 (341)
46 PRK08664 aspartate-semialdehyd 98.2 7.4E-06 1.6E-10 77.0 10.4 97 35-138 3-108 (349)
47 TIGR01850 argC N-acetyl-gamma- 98.2 1E-05 2.2E-10 76.0 10.8 99 36-140 1-102 (346)
48 COG0057 GapA Glyceraldehyde-3- 98.2 5.9E-06 1.3E-10 76.9 8.4 102 35-140 1-125 (335)
49 COG0460 ThrA Homoserine dehydr 98.2 1.8E-05 4E-10 74.0 11.0 132 34-176 2-152 (333)
50 PRK07634 pyrroline-5-carboxyla 98.1 6.6E-05 1.4E-09 66.2 13.3 122 35-170 4-129 (245)
51 PRK14874 aspartate-semialdehyd 98.1 3.5E-05 7.6E-10 72.0 11.9 89 35-134 1-91 (334)
52 PRK09436 thrA bifunctional asp 98.1 4.7E-05 1E-09 79.1 13.6 140 34-176 464-620 (819)
53 TIGR01546 GAPDH-II_archae glyc 98.1 1.2E-05 2.7E-10 75.3 7.8 94 38-138 1-108 (333)
54 PRK14618 NAD(P)H-dependent gly 98.0 2E-05 4.4E-10 72.9 9.0 123 35-169 4-141 (328)
55 PRK11559 garR tartronate semia 98.0 8.8E-05 1.9E-09 67.5 12.7 115 35-165 2-123 (296)
56 KOG1255 Succinyl-CoA synthetas 98.0 2.4E-05 5.2E-10 70.0 8.7 152 35-210 38-194 (329)
57 PRK11880 pyrroline-5-carboxyla 98.0 5.6E-05 1.2E-09 67.6 10.9 100 35-146 2-103 (267)
58 smart00846 Gp_dh_N Glyceraldeh 98.0 4.4E-05 9.6E-10 63.7 9.2 33 36-69 1-33 (149)
59 PLN02700 homoserine dehydrogen 98.0 7.7E-05 1.7E-09 71.0 11.8 136 35-176 3-178 (377)
60 TIGR02717 AcCoA-syn-alpha acet 98.0 9.7E-05 2.1E-09 71.7 12.5 114 35-169 7-132 (447)
61 PRK06476 pyrroline-5-carboxyla 97.9 0.00011 2.3E-09 65.8 11.4 117 36-168 1-121 (258)
62 PF00044 Gp_dh_N: Glyceraldehy 97.9 2.6E-05 5.7E-10 65.3 6.8 33 36-69 1-33 (151)
63 PRK05472 redox-sensing transcr 97.9 6.6E-05 1.4E-09 65.7 9.2 91 34-136 83-176 (213)
64 PRK08955 glyceraldehyde-3-phos 97.9 4.1E-05 8.9E-10 71.8 8.0 97 35-137 2-119 (334)
65 smart00859 Semialdhyde_dh Semi 97.9 9.8E-05 2.1E-09 58.6 8.9 92 37-135 1-97 (122)
66 PRK00094 gpsA NAD(P)H-dependen 97.9 9.6E-05 2.1E-09 67.6 10.0 121 35-166 1-139 (325)
67 PLN02968 Probable N-acetyl-gam 97.9 9.8E-05 2.1E-09 70.5 10.3 98 33-138 36-135 (381)
68 PF03807 F420_oxidored: NADP o 97.9 0.00013 2.7E-09 55.2 8.8 87 37-135 1-92 (96)
69 PRK06598 aspartate-semialdehyd 97.8 0.00023 5.1E-09 67.6 12.3 118 35-169 1-139 (369)
70 PRK05671 aspartate-semialdehyd 97.8 0.00014 3.1E-09 68.3 10.8 119 34-170 3-136 (336)
71 PRK12490 6-phosphogluconate de 97.8 0.00028 6E-09 64.7 12.4 112 36-160 1-116 (299)
72 PLN02383 aspartate semialdehyd 97.8 0.00038 8.3E-09 65.5 13.5 91 33-134 5-97 (344)
73 PRK07679 pyrroline-5-carboxyla 97.8 0.00041 8.9E-09 62.9 13.3 118 36-169 4-128 (279)
74 PRK09466 metL bifunctional asp 97.8 0.00021 4.6E-09 74.2 12.8 135 34-171 457-609 (810)
75 PRK09599 6-phosphogluconate de 97.8 0.00039 8.5E-09 63.8 12.9 118 36-166 1-122 (301)
76 TIGR03450 mycothiol_INO1 inosi 97.8 0.00028 6.2E-09 66.0 11.8 132 36-174 1-194 (351)
77 PRK06928 pyrroline-5-carboxyla 97.8 0.00022 4.8E-09 64.8 10.9 119 35-170 1-127 (277)
78 PLN02688 pyrroline-5-carboxyla 97.8 0.00024 5.2E-09 63.5 10.6 113 36-167 1-121 (266)
79 PLN02358 glyceraldehyde-3-phos 97.8 0.00011 2.3E-09 69.1 8.4 97 34-135 4-124 (338)
80 PRK14620 NAD(P)H-dependent gly 97.7 0.00065 1.4E-08 62.7 13.4 122 36-167 1-140 (326)
81 PTZ00345 glycerol-3-phosphate 97.7 0.0008 1.7E-08 63.9 14.1 130 33-170 9-167 (365)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 97.7 0.0002 4.4E-09 59.6 8.9 122 37-169 1-139 (157)
83 PRK11863 N-acetyl-gamma-glutam 97.7 0.00022 4.8E-09 66.4 9.9 105 34-167 1-118 (313)
84 PRK08040 putative semialdehyde 97.7 0.00023 5.1E-09 66.8 9.9 118 34-168 3-135 (336)
85 PRK07680 late competence prote 97.7 0.0006 1.3E-08 61.5 12.1 116 36-168 1-122 (273)
86 TIGR01505 tartro_sem_red 2-hyd 97.7 0.00074 1.6E-08 61.4 12.3 111 37-163 1-118 (291)
87 COG0002 ArgC Acetylglutamate s 97.6 0.00026 5.6E-09 66.5 9.1 96 34-134 1-98 (349)
88 TIGR00872 gnd_rel 6-phosphoglu 97.6 0.00086 1.9E-08 61.5 12.4 115 36-163 1-118 (298)
89 TIGR01296 asd_B aspartate-semi 97.6 0.00057 1.2E-08 64.2 10.8 86 37-134 1-89 (339)
90 PTZ00431 pyrroline carboxylate 97.6 0.0008 1.7E-08 60.5 11.4 109 36-167 4-117 (260)
91 PRK15059 tartronate semialdehy 97.6 0.0014 3E-08 60.2 12.9 117 36-170 1-124 (292)
92 TIGR03376 glycerol3P_DH glycer 97.6 0.00018 3.9E-09 67.7 7.0 126 37-170 1-154 (342)
93 PRK15461 NADH-dependent gamma- 97.5 0.0014 3E-08 60.1 12.2 116 35-166 1-123 (296)
94 COG2344 AT-rich DNA-binding pr 97.5 0.00034 7.3E-09 60.7 7.4 92 32-137 81-177 (211)
95 COG0240 GpsA Glycerol-3-phosph 97.5 0.0018 3.8E-08 60.7 12.2 127 35-170 1-142 (329)
96 COG1023 Gnd Predicted 6-phosph 97.5 0.00063 1.4E-08 61.3 8.8 95 36-139 1-122 (300)
97 PRK05447 1-deoxy-D-xylulose 5- 97.5 0.0009 1.9E-08 63.9 10.3 97 35-135 1-120 (385)
98 PRK12439 NAD(P)H-dependent gly 97.4 0.0034 7.4E-08 58.8 13.9 129 33-169 5-147 (341)
99 COG0136 Asd Aspartate-semialde 97.4 0.0024 5.2E-08 59.9 12.6 122 35-170 1-138 (334)
100 PRK06728 aspartate-semialdehyd 97.4 0.0011 2.3E-08 62.7 10.3 114 36-169 6-136 (347)
101 PRK14619 NAD(P)H-dependent gly 97.4 0.0014 3.1E-08 60.3 10.7 106 35-168 4-117 (308)
102 COG0345 ProC Pyrroline-5-carbo 97.4 0.0012 2.6E-08 60.2 9.8 119 35-170 1-124 (266)
103 TIGR01851 argC_other N-acetyl- 97.4 0.0016 3.4E-08 60.6 10.8 76 36-134 2-77 (310)
104 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.00095 2.1E-08 59.3 8.5 118 34-167 30-161 (227)
105 TIGR01532 E4PD_g-proteo D-eryt 97.3 0.00065 1.4E-08 63.6 7.7 96 37-137 1-120 (325)
106 PLN02712 arogenate dehydrogena 97.3 0.0036 7.7E-08 63.9 13.6 119 34-168 368-490 (667)
107 PF10727 Rossmann-like: Rossma 97.3 0.00026 5.6E-09 57.7 4.1 105 34-154 9-118 (127)
108 PRK15425 gapA glyceraldehyde-3 97.3 0.00075 1.6E-08 63.3 7.7 99 35-137 2-120 (331)
109 TIGR01692 HIBADH 3-hydroxyisob 97.3 0.0032 6.8E-08 57.4 11.3 113 40-169 1-120 (288)
110 PRK12491 pyrroline-5-carboxyla 97.3 0.003 6.6E-08 57.4 11.2 118 36-170 3-127 (272)
111 PTZ00023 glyceraldehyde-3-phos 97.3 0.001 2.2E-08 62.6 7.9 99 35-137 2-121 (337)
112 PRK13535 erythrose 4-phosphate 97.2 0.00083 1.8E-08 63.2 7.2 99 35-138 1-123 (336)
113 PRK07403 glyceraldehyde-3-phos 97.2 0.00081 1.8E-08 63.2 6.7 99 35-137 1-121 (337)
114 PRK07729 glyceraldehyde-3-phos 97.2 0.0012 2.6E-08 62.2 7.7 99 35-137 2-120 (343)
115 PF05368 NmrA: NmrA-like famil 97.2 0.0022 4.7E-08 55.9 8.9 160 38-210 1-188 (233)
116 COG1810 Uncharacterized protei 97.2 0.0067 1.4E-07 53.7 11.7 155 35-209 1-166 (224)
117 PTZ00142 6-phosphogluconate de 97.2 0.0026 5.6E-08 62.4 10.2 115 35-158 1-121 (470)
118 PLN02256 arogenate dehydrogena 97.2 0.0075 1.6E-07 55.9 12.7 103 34-151 35-140 (304)
119 PLN02237 glyceraldehyde-3-phos 97.2 0.0015 3.3E-08 63.3 8.2 99 34-137 74-196 (442)
120 PLN02712 arogenate dehydrogena 97.1 0.0083 1.8E-07 61.3 13.3 105 33-152 50-157 (667)
121 PF13460 NAD_binding_10: NADH( 97.1 0.0038 8.3E-08 51.9 9.1 82 38-135 1-94 (183)
122 TIGR00715 precor6x_red precorr 97.1 0.0023 5E-08 58.0 8.2 87 36-134 1-96 (256)
123 PRK07502 cyclohexadienyl dehyd 97.1 0.015 3.3E-07 53.3 13.8 111 35-161 6-122 (307)
124 COG2910 Putative NADH-flavin r 97.1 0.0012 2.6E-08 57.3 5.7 33 36-69 1-33 (211)
125 PRK08655 prephenate dehydrogen 97.0 0.01 2.3E-07 57.5 12.8 113 36-162 1-115 (437)
126 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0051 1.1E-07 56.3 9.9 112 36-161 1-141 (317)
127 PLN03096 glyceraldehyde-3-phos 97.0 0.0026 5.5E-08 61.1 7.9 98 35-137 60-181 (395)
128 PLN02272 glyceraldehyde-3-phos 97.0 0.0026 5.6E-08 61.5 7.9 99 35-137 85-206 (421)
129 PF03721 UDPG_MGDP_dh_N: UDP-g 97.0 0.0033 7.2E-08 54.1 7.8 123 36-167 1-155 (185)
130 KOG0455 Homoserine dehydrogena 97.0 0.013 2.8E-07 53.4 11.6 193 35-240 3-235 (364)
131 PF07755 DUF1611: Protein of u 96.9 0.0019 4E-08 59.9 6.3 86 67-161 1-92 (301)
132 PRK07531 bifunctional 3-hydrox 96.9 0.0087 1.9E-07 58.9 11.1 118 36-165 5-141 (495)
133 COG3367 Uncharacterized conser 96.9 0.0033 7.2E-08 58.6 7.6 105 48-159 15-125 (339)
134 PLN02350 phosphogluconate dehy 96.9 0.014 3.1E-07 57.5 12.4 118 34-160 5-129 (493)
135 TIGR03026 NDP-sugDHase nucleot 96.9 0.016 3.4E-07 55.5 12.4 122 36-168 1-158 (411)
136 TIGR00465 ilvC ketol-acid redu 96.9 0.0059 1.3E-07 56.9 9.1 113 36-168 4-121 (314)
137 PLN02522 ATP citrate (pro-S)-l 96.9 0.0041 8.9E-08 62.7 8.5 80 85-169 60-141 (608)
138 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.0071 1.5E-07 53.5 9.0 118 35-168 23-153 (217)
139 cd01065 NAD_bind_Shikimate_DH 96.8 0.0029 6.2E-08 51.6 6.0 109 35-160 19-136 (155)
140 PRK07417 arogenate dehydrogena 96.8 0.016 3.5E-07 52.5 11.1 98 36-149 1-102 (279)
141 COG4693 PchG Oxidoreductase (N 96.8 0.0051 1.1E-07 56.5 7.5 113 35-161 4-121 (361)
142 PRK08223 hypothetical protein; 96.8 0.017 3.6E-07 53.3 11.0 96 35-138 27-152 (287)
143 KOG0409 Predicted dehydrogenas 96.8 0.019 4.1E-07 53.3 11.3 139 15-169 15-160 (327)
144 COG2084 MmsB 3-hydroxyisobutyr 96.7 0.022 4.8E-07 52.5 11.4 114 36-164 1-121 (286)
145 TIGR02355 moeB molybdopterin s 96.7 0.013 2.8E-07 52.5 9.6 33 35-69 24-56 (240)
146 PF04321 RmlD_sub_bind: RmlD s 96.7 0.0052 1.1E-07 55.9 6.9 80 36-135 1-98 (286)
147 PRK08507 prephenate dehydrogen 96.6 0.031 6.7E-07 50.4 11.7 76 36-127 1-79 (275)
148 cd00755 YgdL_like Family of ac 96.6 0.036 7.9E-07 49.4 11.9 95 35-136 11-133 (231)
149 PLN02858 fructose-bisphosphate 96.6 0.03 6.5E-07 61.6 13.4 119 34-169 3-130 (1378)
150 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.015 3.3E-07 49.4 9.0 31 37-69 1-31 (174)
151 cd01483 E1_enzyme_family Super 96.5 0.026 5.7E-07 45.8 9.7 31 37-69 1-31 (143)
152 PRK12475 thiamine/molybdopteri 96.5 0.019 4.2E-07 53.9 10.0 95 35-137 24-148 (338)
153 PRK15116 sulfur acceptor prote 96.5 0.066 1.4E-06 48.9 13.2 95 35-136 30-152 (268)
154 PLN02353 probable UDP-glucose 96.5 0.032 6.9E-07 54.9 11.6 123 35-165 1-158 (473)
155 PLN02858 fructose-bisphosphate 96.5 0.041 8.9E-07 60.5 13.5 119 35-170 324-451 (1378)
156 TIGR00873 gnd 6-phosphoglucona 96.5 0.031 6.7E-07 54.9 11.4 123 37-169 1-128 (467)
157 PRK06130 3-hydroxybutyryl-CoA 96.5 0.021 4.5E-07 52.4 9.7 72 35-117 4-90 (311)
158 PRK09414 glutamate dehydrogena 96.4 0.015 3.2E-07 56.7 9.0 118 35-166 232-368 (445)
159 COG1832 Predicted CoA-binding 96.4 0.034 7.3E-07 45.9 9.6 102 36-157 17-121 (140)
160 PRK11908 NAD-dependent epimera 96.4 0.023 4.9E-07 52.5 9.7 33 35-67 1-33 (347)
161 TIGR02853 spore_dpaA dipicolin 96.4 0.02 4.4E-07 52.5 8.9 111 35-167 151-266 (287)
162 TIGR01915 npdG NADPH-dependent 96.4 0.053 1.2E-06 47.4 11.2 96 36-142 1-106 (219)
163 COG1179 Dinucleotide-utilizing 96.3 0.05 1.1E-06 49.1 11.0 92 37-135 32-151 (263)
164 PRK05479 ketol-acid reductoiso 96.3 0.044 9.6E-07 51.5 10.8 93 36-144 18-114 (330)
165 PLN02696 1-deoxy-D-xylulose-5- 96.3 0.1 2.2E-06 51.1 13.4 119 34-160 56-203 (454)
166 PRK06091 membrane protein FdrA 96.2 0.025 5.4E-07 56.4 9.3 75 87-165 101-175 (555)
167 COG2099 CobK Precorrin-6x redu 96.2 0.062 1.4E-06 48.7 11.0 127 34-176 1-144 (257)
168 COG1091 RfbD dTDP-4-dehydrorha 96.2 0.021 4.5E-07 52.6 8.1 79 36-135 1-97 (281)
169 PRK05808 3-hydroxybutyryl-CoA 96.2 0.034 7.4E-07 50.3 9.6 100 35-144 3-125 (282)
170 TIGR01534 GAPDH-I glyceraldehy 96.2 0.012 2.5E-07 55.3 6.7 97 37-137 1-121 (327)
171 PRK08644 thiamine biosynthesis 96.2 0.04 8.7E-07 48.4 9.7 33 35-69 28-60 (212)
172 PRK08328 hypothetical protein; 96.2 0.049 1.1E-06 48.3 10.2 33 35-69 27-59 (231)
173 TIGR01745 asd_gamma aspartate- 96.2 0.024 5.2E-07 54.0 8.6 119 36-170 1-139 (366)
174 PRK08618 ornithine cyclodeamin 96.2 0.0099 2.1E-07 55.3 5.9 92 36-138 128-223 (325)
175 PRK03369 murD UDP-N-acetylmura 96.1 0.12 2.6E-06 50.7 13.5 137 36-195 13-175 (488)
176 cd00757 ThiF_MoeB_HesA_family 96.0 0.062 1.3E-06 47.4 10.0 123 35-165 21-145 (228)
177 PRK07411 hypothetical protein; 96.0 0.053 1.1E-06 51.9 10.2 98 35-140 38-164 (390)
178 PRK08818 prephenate dehydrogen 96.0 0.068 1.5E-06 51.0 10.8 35 34-69 3-37 (370)
179 PRK08605 D-lactate dehydrogena 96.0 0.032 6.9E-07 52.2 8.3 102 35-154 146-252 (332)
180 TIGR03649 ergot_EASG ergot alk 96.0 0.098 2.1E-06 46.7 11.1 116 37-160 1-131 (285)
181 PLN00016 RNA-binding protein; 95.9 0.067 1.4E-06 50.3 10.4 96 33-134 50-161 (378)
182 cd05213 NAD_bind_Glutamyl_tRNA 95.9 0.041 8.9E-07 50.9 8.6 80 34-126 177-258 (311)
183 PLN00106 malate dehydrogenase 95.9 0.045 9.7E-07 51.3 8.9 50 20-69 3-52 (323)
184 PRK05600 thiamine biosynthesis 95.8 0.074 1.6E-06 50.6 10.2 96 35-138 41-164 (370)
185 PRK05597 molybdopterin biosynt 95.8 0.072 1.6E-06 50.4 10.1 95 35-137 28-150 (355)
186 KOG2380 Prephenate dehydrogena 95.8 0.052 1.1E-06 51.4 8.7 102 34-151 51-156 (480)
187 PRK07878 molybdopterin biosynt 95.8 0.076 1.6E-06 50.8 10.2 96 35-138 42-165 (392)
188 PRK08289 glyceraldehyde-3-phos 95.8 0.047 1E-06 53.5 8.6 35 33-68 125-163 (477)
189 TIGR01214 rmlD dTDP-4-dehydror 95.7 0.054 1.2E-06 48.1 8.4 79 37-135 1-97 (287)
190 PRK06444 prephenate dehydrogen 95.7 0.037 8.1E-07 48.2 7.2 28 36-64 1-28 (197)
191 PRK06522 2-dehydropantoate 2-r 95.7 0.11 2.3E-06 46.9 10.4 95 36-142 1-105 (304)
192 KOG2018 Predicted dinucleotide 95.7 0.076 1.6E-06 49.8 9.4 120 37-164 76-245 (430)
193 PRK08293 3-hydroxybutyryl-CoA 95.7 0.051 1.1E-06 49.4 8.3 101 35-144 3-127 (287)
194 PRK00141 murD UDP-N-acetylmura 95.7 0.26 5.6E-06 48.1 13.7 143 29-192 9-178 (473)
195 PRK08306 dipicolinate synthase 95.7 0.038 8.2E-07 50.9 7.5 114 35-169 152-269 (296)
196 PRK14806 bifunctional cyclohex 95.7 0.23 4.9E-06 51.0 13.8 103 36-152 4-111 (735)
197 PF00208 ELFV_dehydrog: Glutam 95.7 0.053 1.1E-06 48.8 8.1 119 36-167 33-172 (244)
198 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.036 7.8E-07 47.3 6.8 98 37-144 1-121 (180)
199 PRK07819 3-hydroxybutyryl-CoA 95.7 0.12 2.6E-06 47.2 10.7 100 36-145 6-129 (286)
200 PLN02427 UDP-apiose/xylose syn 95.7 0.054 1.2E-06 50.9 8.6 36 32-67 11-46 (386)
201 TIGR02356 adenyl_thiF thiazole 95.7 0.095 2.1E-06 45.5 9.5 33 35-69 21-53 (202)
202 COG1086 Predicted nucleoside-d 95.7 0.057 1.2E-06 54.0 8.9 93 31-135 112-209 (588)
203 PRK08229 2-dehydropantoate 2-r 95.6 0.14 3.1E-06 47.2 11.2 104 34-152 1-120 (341)
204 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.1 2.2E-06 47.4 9.7 119 35-167 38-179 (254)
205 PRK07688 thiamine/molybdopteri 95.6 0.13 2.7E-06 48.5 10.7 96 35-138 24-149 (339)
206 PRK08762 molybdopterin biosynt 95.6 0.12 2.6E-06 49.0 10.6 96 35-138 135-258 (376)
207 cd01075 NAD_bind_Leu_Phe_Val_D 95.6 0.089 1.9E-06 45.7 8.9 107 36-165 29-139 (200)
208 PLN02778 3,5-epimerase/4-reduc 95.5 0.11 2.3E-06 47.5 9.8 34 30-64 4-37 (298)
209 PRK09987 dTDP-4-dehydrorhamnos 95.5 0.077 1.7E-06 48.2 8.8 86 36-138 1-104 (299)
210 PRK06545 prephenate dehydrogen 95.5 0.21 4.7E-06 47.0 11.9 102 37-151 2-108 (359)
211 PF00899 ThiF: ThiF family; I 95.5 0.072 1.6E-06 42.9 7.6 32 36-69 3-34 (135)
212 PF00056 Ldh_1_N: lactate/mala 95.5 0.029 6.4E-07 46.0 5.3 126 36-181 1-133 (141)
213 PRK11150 rfaD ADP-L-glycero-D- 95.4 0.091 2E-06 47.4 8.9 96 38-138 2-116 (308)
214 PRK06129 3-hydroxyacyl-CoA deh 95.4 0.16 3.4E-06 46.7 10.4 72 35-115 2-91 (308)
215 PRK05690 molybdopterin biosynt 95.4 0.16 3.5E-06 45.5 10.2 33 35-69 32-64 (245)
216 PRK04663 murD UDP-N-acetylmura 95.4 0.51 1.1E-05 45.5 14.3 136 35-192 7-163 (438)
217 PRK11199 tyrA bifunctional cho 95.4 0.2 4.4E-06 47.6 11.4 34 34-69 97-130 (374)
218 PF02593 dTMP_synthase: Thymid 95.4 0.2 4.3E-06 44.5 10.5 149 44-210 5-164 (217)
219 cd01485 E1-1_like Ubiquitin ac 95.4 0.14 3E-06 44.4 9.4 33 35-69 19-51 (198)
220 PTZ00353 glycosomal glyceralde 95.3 0.023 5.1E-07 53.6 4.8 32 36-68 3-34 (342)
221 PTZ00434 cytosolic glyceraldeh 95.3 0.025 5.3E-07 53.7 4.9 34 35-69 3-40 (361)
222 COG1260 INO1 Myo-inositol-1-ph 95.3 0.081 1.8E-06 49.9 8.2 126 33-160 3-188 (362)
223 PRK07530 3-hydroxybutyryl-CoA 95.3 0.11 2.4E-06 47.2 9.1 31 36-69 5-35 (292)
224 PRK05865 hypothetical protein; 95.3 0.14 3.1E-06 53.8 10.7 111 36-160 1-121 (854)
225 PRK10124 putative UDP-glucose 95.2 0.17 3.6E-06 49.5 10.5 86 35-136 143-236 (463)
226 PRK14106 murD UDP-N-acetylmura 95.2 0.4 8.7E-06 46.0 13.0 137 36-191 6-164 (450)
227 PLN03139 formate dehydrogenase 95.2 0.15 3.3E-06 48.9 9.9 65 35-114 199-263 (386)
228 COG1064 AdhP Zn-dependent alco 95.1 0.28 6.1E-06 46.3 11.4 91 37-139 169-262 (339)
229 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.28 6E-06 42.5 10.5 33 36-70 22-54 (197)
230 PRK07574 formate dehydrogenase 95.1 0.2 4.3E-06 48.1 10.4 64 36-114 193-256 (385)
231 PRK15057 UDP-glucose 6-dehydro 95.1 0.29 6.3E-06 46.9 11.5 30 36-69 1-30 (388)
232 PRK09260 3-hydroxybutyryl-CoA 95.1 0.054 1.2E-06 49.2 6.2 31 36-69 2-32 (288)
233 PRK06035 3-hydroxyacyl-CoA deh 95.1 0.097 2.1E-06 47.6 7.9 31 36-69 4-34 (291)
234 PF02670 DXP_reductoisom: 1-de 95.0 0.25 5.5E-06 40.4 9.2 32 38-69 1-33 (129)
235 PRK02472 murD UDP-N-acetylmura 95.0 0.64 1.4E-05 44.6 13.6 142 36-195 6-168 (447)
236 cd01336 MDH_cytoplasmic_cytoso 94.9 0.091 2E-06 49.1 7.4 71 35-113 2-85 (325)
237 PRK06046 alanine dehydrogenase 94.9 0.073 1.6E-06 49.6 6.8 91 35-137 129-224 (326)
238 PF10087 DUF2325: Uncharacteri 94.9 0.41 8.9E-06 36.6 9.8 83 37-141 1-87 (97)
239 PF01488 Shikimate_DH: Shikima 94.9 0.049 1.1E-06 44.2 4.8 71 35-115 12-84 (135)
240 PLN02545 3-hydroxybutyryl-CoA 94.9 0.16 3.5E-06 46.2 8.7 32 35-69 4-35 (295)
241 PLN02166 dTDP-glucose 4,6-dehy 94.8 0.15 3.3E-06 49.4 9.0 93 35-138 120-234 (436)
242 PRK14852 hypothetical protein; 94.8 0.17 3.8E-06 53.7 10.0 96 35-138 332-457 (989)
243 PTZ00082 L-lactate dehydrogena 94.8 0.3 6.6E-06 45.5 10.7 33 34-69 5-38 (321)
244 PLN02260 probable rhamnose bio 94.8 0.14 3.1E-06 51.8 9.2 87 29-138 374-481 (668)
245 COG0287 TyrA Prephenate dehydr 94.8 0.47 1E-05 43.6 11.7 105 34-152 2-112 (279)
246 PRK13403 ketol-acid reductoiso 94.8 0.17 3.6E-06 47.7 8.9 63 36-114 17-79 (335)
247 PRK07877 hypothetical protein; 94.8 0.18 3.8E-06 52.2 9.8 95 35-138 107-229 (722)
248 PRK06249 2-dehydropantoate 2-r 94.8 0.34 7.3E-06 44.6 10.9 106 35-151 5-118 (313)
249 cd01491 Ube1_repeat1 Ubiquitin 94.8 0.28 6E-06 45.3 10.1 119 36-166 20-140 (286)
250 PLN02477 glutamate dehydrogena 94.8 0.19 4.1E-06 48.6 9.4 116 35-167 206-336 (410)
251 TIGR00243 Dxr 1-deoxy-D-xylulo 94.8 0.45 9.8E-06 45.7 11.7 101 35-136 1-123 (389)
252 TIGR03025 EPS_sugtrans exopoly 94.7 0.3 6.4E-06 47.1 10.6 87 36-135 126-220 (445)
253 cd01484 E1-2_like Ubiquitin ac 94.7 0.32 7E-06 43.5 10.0 30 37-68 1-30 (234)
254 cd01490 Ube1_repeat2 Ubiquitin 94.6 0.24 5.3E-06 48.2 9.8 96 37-140 1-134 (435)
255 KOG1502 Flavonol reductase/cin 94.6 0.36 7.9E-06 45.4 10.6 96 34-136 5-127 (327)
256 PRK07066 3-hydroxybutyryl-CoA 94.6 0.31 6.6E-06 45.6 10.1 32 35-69 7-38 (321)
257 cd01489 Uba2_SUMO Ubiquitin ac 94.6 0.41 8.8E-06 44.7 10.8 96 37-140 1-126 (312)
258 PRK09496 trkA potassium transp 94.6 0.27 5.8E-06 47.0 10.0 128 36-175 1-136 (453)
259 TIGR03023 WcaJ_sugtrans Undeca 94.6 0.28 6.1E-06 47.4 10.1 88 35-135 128-223 (451)
260 PLN02206 UDP-glucuronate decar 94.5 0.26 5.5E-06 47.9 9.7 93 35-138 119-233 (442)
261 PRK04308 murD UDP-N-acetylmura 94.5 1.5 3.3E-05 42.1 15.0 142 36-192 6-169 (445)
262 TIGR03570 NeuD_NnaD sugar O-ac 94.5 0.56 1.2E-05 39.2 10.6 87 37-134 1-87 (201)
263 KOG2711 Glycerol-3-phosphate d 94.5 0.44 9.5E-06 45.1 10.6 141 22-170 8-179 (372)
264 PRK01710 murD UDP-N-acetylmura 94.4 1 2.2E-05 43.7 13.7 138 36-191 15-173 (458)
265 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.69 1.5E-05 44.6 12.2 32 35-69 3-34 (415)
266 COG0771 MurD UDP-N-acetylmuram 94.4 0.59 1.3E-05 45.8 11.7 138 35-192 7-167 (448)
267 TIGR02371 ala_DH_arch alanine 94.3 0.13 2.8E-06 48.0 6.9 92 35-137 128-223 (325)
268 PRK08125 bifunctional UDP-gluc 94.3 0.21 4.6E-06 50.7 9.0 33 35-67 315-347 (660)
269 PTZ00117 malate dehydrogenase; 94.3 0.18 4E-06 46.8 7.9 33 35-69 5-37 (319)
270 COG4569 MhpF Acetaldehyde dehy 94.3 0.25 5.4E-06 43.9 8.2 98 33-138 2-103 (310)
271 PRK12921 2-dehydropantoate 2-r 94.3 0.27 5.8E-06 44.5 8.7 95 36-142 1-107 (305)
272 PRK12320 hypothetical protein; 94.2 0.32 7E-06 50.1 10.1 83 36-135 1-99 (699)
273 TIGR03466 HpnA hopanoid-associ 94.2 0.23 4.9E-06 44.7 8.1 32 36-68 1-32 (328)
274 PLN02695 GDP-D-mannose-3',5'-e 94.2 0.29 6.2E-06 46.1 9.0 32 35-67 21-52 (370)
275 PRK13243 glyoxylate reductase; 94.2 0.24 5.2E-06 46.4 8.4 63 35-114 150-212 (333)
276 TIGR01181 dTDP_gluc_dehyt dTDP 94.1 0.45 9.8E-06 42.3 9.8 30 37-66 1-31 (317)
277 PRK08268 3-hydroxy-acyl-CoA de 94.1 0.29 6.2E-06 48.5 9.2 31 36-69 8-38 (507)
278 PRK08057 cobalt-precorrin-6x r 94.1 0.34 7.4E-06 43.7 8.9 124 34-177 1-144 (248)
279 PTZ00079 NADP-specific glutama 94.1 0.5 1.1E-05 46.3 10.5 118 35-166 237-377 (454)
280 PRK05476 S-adenosyl-L-homocyst 94.0 0.26 5.6E-06 47.9 8.5 101 35-152 212-314 (425)
281 COG2085 Predicted dinucleotide 94.0 0.48 1E-05 41.9 9.4 91 35-138 1-93 (211)
282 PRK14030 glutamate dehydrogena 94.0 0.32 7E-06 47.5 9.1 117 36-166 229-368 (445)
283 PRK05086 malate dehydrogenase; 93.9 0.64 1.4E-05 43.2 10.7 34 36-69 1-35 (312)
284 PLN03209 translocon at the inn 93.9 0.5 1.1E-05 47.7 10.5 32 36-68 81-112 (576)
285 PRK15182 Vi polysaccharide bio 93.9 0.3 6.6E-06 47.3 8.7 32 34-69 5-36 (425)
286 TIGR02354 thiF_fam2 thiamine b 93.8 0.39 8.4E-06 41.8 8.5 33 35-69 21-53 (200)
287 PLN02657 3,8-divinyl protochlo 93.7 0.43 9.3E-06 45.4 9.4 33 35-68 60-92 (390)
288 cd05293 LDH_1 A subgroup of L- 93.7 0.2 4.3E-06 46.6 6.9 71 35-113 3-78 (312)
289 PF07991 IlvN: Acetohydroxy ac 93.7 0.39 8.4E-06 40.9 7.9 143 36-209 5-153 (165)
290 PRK12480 D-lactate dehydrogena 93.7 0.44 9.4E-06 44.6 9.1 60 36-114 147-206 (330)
291 COG1004 Ugd Predicted UDP-gluc 93.7 0.66 1.4E-05 44.8 10.3 120 36-165 1-151 (414)
292 PF01073 3Beta_HSD: 3-beta hyd 93.7 0.52 1.1E-05 42.9 9.5 31 39-69 1-31 (280)
293 PRK03803 murD UDP-N-acetylmura 93.6 1.9 4.1E-05 41.5 13.7 135 37-191 8-162 (448)
294 PRK05693 short chain dehydroge 93.6 0.68 1.5E-05 40.9 9.9 78 35-139 1-81 (274)
295 COG0569 TrkA K+ transport syst 93.6 0.35 7.7E-06 42.7 8.0 159 36-208 1-170 (225)
296 PRK06901 aspartate-semialdehyd 93.5 0.18 3.9E-06 47.2 6.2 115 35-169 3-134 (322)
297 PRK06141 ornithine cyclodeamin 93.5 0.19 4.1E-06 46.6 6.3 88 36-134 126-216 (314)
298 TIGR02197 heptose_epim ADP-L-g 93.5 0.53 1.1E-05 42.1 9.1 30 38-69 1-31 (314)
299 KOG4354 N-acetyl-gamma-glutamy 93.3 0.29 6.3E-06 44.5 6.9 126 32-170 16-164 (340)
300 PF02844 GARS_N: Phosphoribosy 93.3 0.78 1.7E-05 35.9 8.5 31 36-67 1-31 (100)
301 PF02571 CbiJ: Precorrin-6x re 93.3 0.37 8.1E-06 43.5 7.7 127 36-177 1-147 (249)
302 KOG1203 Predicted dehydrogenas 93.3 0.39 8.5E-06 46.5 8.2 39 29-68 73-111 (411)
303 COG0373 HemA Glutamyl-tRNA red 93.2 0.28 6E-06 47.5 7.1 85 35-132 178-267 (414)
304 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 0.39 8.4E-06 47.6 8.3 32 35-69 5-36 (503)
305 cd01338 MDH_choloroplast_like 93.2 0.32 7E-06 45.4 7.4 23 35-57 2-24 (322)
306 PRK10675 UDP-galactose-4-epime 93.2 0.62 1.3E-05 42.4 9.2 30 36-66 1-30 (338)
307 PRK10217 dTDP-glucose 4,6-dehy 93.2 0.27 6E-06 45.2 6.9 34 35-69 1-34 (355)
308 PRK05442 malate dehydrogenase; 93.1 0.32 6.8E-06 45.6 7.2 25 33-57 2-26 (326)
309 TIGR03022 WbaP_sugtrans Undeca 93.1 1.3 2.8E-05 42.9 11.7 89 35-135 125-221 (456)
310 cd00704 MDH Malate dehydrogena 93.1 0.41 8.8E-06 44.8 7.9 24 36-59 1-24 (323)
311 cd01493 APPBP1_RUB Ubiquitin a 93.1 1.1 2.4E-05 43.6 11.1 122 36-166 21-147 (425)
312 PRK14031 glutamate dehydrogena 93.0 0.61 1.3E-05 45.6 9.3 95 36-138 229-343 (444)
313 KOG1198 Zinc-binding oxidoredu 93.0 0.37 8E-06 45.5 7.6 99 35-139 158-258 (347)
314 PLN02214 cinnamoyl-CoA reducta 93.0 0.71 1.5E-05 42.8 9.4 33 35-68 10-42 (342)
315 cd05291 HicDH_like L-2-hydroxy 93.0 0.31 6.7E-06 44.9 6.9 31 37-69 2-33 (306)
316 cd01337 MDH_glyoxysomal_mitoch 93.0 0.43 9.4E-06 44.4 7.8 34 36-69 1-34 (310)
317 cd01486 Apg7 Apg7 is an E1-lik 93.0 0.8 1.7E-05 42.7 9.5 41 94-140 102-143 (307)
318 TIGR01087 murD UDP-N-acetylmur 93.0 2.6 5.6E-05 40.3 13.5 136 37-192 1-158 (433)
319 PRK07340 ornithine cyclodeamin 93.0 0.29 6.2E-06 45.3 6.6 91 36-137 126-218 (304)
320 PRK06223 malate dehydrogenase; 93.0 0.36 7.9E-06 44.1 7.3 33 35-69 2-34 (307)
321 PRK06182 short chain dehydroge 92.9 1 2.2E-05 39.8 9.9 78 36-140 4-84 (273)
322 TIGR01035 hemA glutamyl-tRNA r 92.9 0.37 8E-06 46.5 7.6 88 36-136 181-275 (417)
323 PRK05993 short chain dehydroge 92.9 1 2.2E-05 40.1 10.0 77 36-139 5-85 (277)
324 TIGR01759 MalateDH-SF1 malate 92.9 0.5 1.1E-05 44.2 8.2 26 34-59 2-27 (323)
325 TIGR00936 ahcY adenosylhomocys 92.9 0.79 1.7E-05 44.4 9.7 84 35-134 195-279 (406)
326 PTZ00325 malate dehydrogenase; 92.8 0.46 1E-05 44.5 7.8 37 33-69 6-42 (321)
327 PF02826 2-Hacid_dh_C: D-isome 92.8 0.18 3.8E-06 42.7 4.6 63 35-113 36-98 (178)
328 PRK06436 glycerate dehydrogena 92.7 0.59 1.3E-05 43.3 8.4 58 35-113 122-180 (303)
329 PRK00045 hemA glutamyl-tRNA re 92.7 0.25 5.4E-06 47.7 6.0 80 35-127 182-266 (423)
330 PRK08291 ectoine utilization p 92.6 0.36 7.8E-06 45.0 6.9 89 35-134 132-224 (330)
331 PRK15409 bifunctional glyoxyla 92.6 0.38 8.2E-06 45.0 7.0 63 35-113 145-207 (323)
332 PRK08177 short chain dehydroge 92.6 0.82 1.8E-05 39.2 8.7 80 35-140 1-81 (225)
333 PLN00203 glutamyl-tRNA reducta 92.6 0.38 8.2E-06 47.9 7.3 83 35-127 266-353 (519)
334 PRK15181 Vi polysaccharide bio 92.6 0.82 1.8E-05 42.3 9.2 33 34-67 14-46 (348)
335 PRK01438 murD UDP-N-acetylmura 92.5 1.7 3.6E-05 42.2 11.6 31 36-69 17-47 (480)
336 TIGR01327 PGDH D-3-phosphoglyc 92.5 0.52 1.1E-05 46.9 8.2 63 36-114 139-201 (525)
337 TIGR00877 purD phosphoribosyla 92.5 1.2 2.7E-05 42.4 10.5 90 36-134 1-92 (423)
338 PLN02725 GDP-4-keto-6-deoxyman 92.5 0.47 1E-05 42.3 7.2 78 39-135 1-98 (306)
339 TIGR01381 E1_like_apg7 E1-like 92.4 0.68 1.5E-05 47.3 8.9 97 35-141 338-484 (664)
340 COG1052 LdhA Lactate dehydroge 92.4 1.5 3.3E-05 41.1 10.6 62 36-114 147-208 (324)
341 PRK14851 hypothetical protein; 92.3 0.76 1.7E-05 47.3 9.2 32 35-68 43-74 (679)
342 TIGR02622 CDP_4_6_dhtase CDP-g 92.2 1.8 3.9E-05 39.9 10.9 31 35-66 4-34 (349)
343 PRK14982 acyl-ACP reductase; P 92.1 0.34 7.4E-06 45.8 6.1 33 36-69 156-189 (340)
344 TIGR01777 yfcH conserved hypot 92.1 0.92 2E-05 40.0 8.6 30 38-68 1-30 (292)
345 TIGR02992 ectoine_eutC ectoine 92.1 0.47 1E-05 44.2 6.9 89 35-134 129-221 (326)
346 PLN02260 probable rhamnose bio 92.1 1.7 3.6E-05 44.1 11.4 32 35-66 6-38 (668)
347 PLN02662 cinnamyl-alcohol dehy 92.1 1.8 3.9E-05 38.9 10.6 32 36-68 5-36 (322)
348 PRK06395 phosphoribosylamine-- 92.0 1 2.3E-05 43.6 9.5 116 34-159 1-120 (435)
349 cd00401 AdoHcyase S-adenosyl-L 92.0 0.79 1.7E-05 44.4 8.5 83 36-134 203-286 (413)
350 PRK08340 glucose-1-dehydrogena 92.0 1 2.2E-05 39.4 8.7 29 36-65 1-29 (259)
351 KOG1494 NAD-dependent malate d 91.9 0.3 6.5E-06 45.2 5.2 36 34-69 27-62 (345)
352 COG0604 Qor NADPH:quinone redu 91.9 0.86 1.9E-05 42.5 8.5 95 37-139 145-244 (326)
353 PLN02240 UDP-glucose 4-epimera 91.8 1.3 2.8E-05 40.5 9.5 31 36-67 6-36 (352)
354 COG0027 PurT Formate-dependent 91.8 0.94 2E-05 42.6 8.4 129 27-167 4-160 (394)
355 cd00650 LDH_MDH_like NAD-depen 91.7 0.41 8.9E-06 42.9 5.9 69 38-112 1-76 (263)
356 KOG0023 Alcohol dehydrogenase, 91.7 1.5 3.2E-05 41.4 9.6 96 36-161 183-278 (360)
357 COG0743 Dxr 1-deoxy-D-xylulose 91.6 1.5 3.2E-05 41.9 9.6 97 35-136 1-119 (385)
358 KOG0780 Signal recognition par 91.5 1.1 2.4E-05 43.3 8.8 83 116-199 115-199 (483)
359 PRK04690 murD UDP-N-acetylmura 91.5 3.2 6.9E-05 40.5 12.3 141 36-195 9-175 (468)
360 PLN00112 malate dehydrogenase 91.5 0.47 1E-05 46.4 6.3 25 34-58 99-123 (444)
361 KOG2742 Predicted oxidoreducta 91.4 0.089 1.9E-06 49.5 1.3 108 35-154 3-111 (367)
362 KOG2017 Molybdopterin synthase 91.4 0.45 9.7E-06 45.2 5.9 95 36-138 67-189 (427)
363 TIGR01472 gmd GDP-mannose 4,6- 91.4 1.3 2.8E-05 40.7 9.0 30 37-67 2-31 (343)
364 PRK05884 short chain dehydroge 91.4 0.92 2E-05 39.2 7.6 30 36-66 1-30 (223)
365 TIGR01772 MDH_euk_gproteo mala 91.4 0.99 2.1E-05 42.1 8.2 33 37-69 1-33 (312)
366 PRK00066 ldh L-lactate dehydro 91.3 0.64 1.4E-05 43.2 6.9 34 35-69 6-39 (315)
367 COG3010 NanE Putative N-acetyl 91.2 1.4 2.9E-05 39.1 8.3 95 52-165 58-189 (229)
368 PRK06153 hypothetical protein; 91.2 1 2.2E-05 43.4 8.2 31 36-68 177-207 (393)
369 TIGR01179 galE UDP-glucose-4-e 91.2 1.6 3.5E-05 38.9 9.2 29 37-66 1-29 (328)
370 PRK15438 erythronate-4-phospha 91.2 0.67 1.4E-05 44.4 7.0 60 35-114 116-175 (378)
371 TIGR02440 FadJ fatty oxidation 91.2 1.5 3.2E-05 45.2 10.0 35 33-69 302-336 (699)
372 TIGR02825 B4_12hDH leukotriene 91.1 1.9 4.2E-05 39.0 9.8 94 36-138 140-239 (325)
373 PRK10084 dTDP-glucose 4,6 dehy 91.1 0.54 1.2E-05 43.2 6.2 32 36-68 1-32 (352)
374 COG0111 SerA Phosphoglycerate 91.1 0.69 1.5E-05 43.4 6.9 64 35-114 142-205 (324)
375 cd05292 LDH_2 A subgroup of L- 91.0 0.66 1.4E-05 42.8 6.7 34 36-70 1-34 (308)
376 COG0541 Ffh Signal recognition 91.0 1 2.3E-05 43.9 8.1 82 117-199 115-198 (451)
377 PRK06180 short chain dehydroge 90.9 1.9 4.1E-05 38.3 9.4 81 35-139 4-87 (277)
378 COG0334 GdhA Glutamate dehydro 90.9 1.5 3.2E-05 42.5 9.0 116 34-166 206-336 (411)
379 KOG0172 Lysine-ketoglutarate r 90.9 0.73 1.6E-05 44.4 6.9 123 35-169 2-129 (445)
380 PRK06718 precorrin-2 dehydroge 90.9 2.1 4.6E-05 37.2 9.3 87 36-135 11-99 (202)
381 PRK10538 malonic semialdehyde 90.8 1.9 4.1E-05 37.5 9.1 80 36-139 1-83 (248)
382 PRK03659 glutathione-regulated 90.8 5.7 0.00012 40.2 13.7 122 35-172 400-527 (601)
383 PRK06953 short chain dehydroge 90.8 1.6 3.5E-05 37.2 8.5 79 35-140 1-80 (222)
384 PRK15204 undecaprenyl-phosphat 90.7 2.3 5.1E-05 41.7 10.5 86 36-132 147-236 (476)
385 PRK07904 short chain dehydroge 90.7 2.5 5.5E-05 37.2 9.9 87 35-139 8-96 (253)
386 COG1063 Tdh Threonine dehydrog 90.7 1.1 2.4E-05 42.0 8.0 98 37-141 171-274 (350)
387 COG0300 DltE Short-chain dehyd 90.7 1.5 3.2E-05 40.1 8.5 87 33-139 4-93 (265)
388 PLN02896 cinnamyl-alcohol dehy 90.7 1.3 2.7E-05 41.0 8.2 33 35-68 10-42 (353)
389 PRK00885 phosphoribosylamine-- 90.6 2.8 6.1E-05 40.0 10.8 112 36-158 1-116 (420)
390 KOG2774 NAD dependent epimeras 90.6 1.8 3.8E-05 39.5 8.7 103 4-114 13-118 (366)
391 PRK08267 short chain dehydroge 90.6 1.5 3.2E-05 38.3 8.2 82 35-139 1-86 (260)
392 PRK06988 putative formyltransf 90.5 0.64 1.4E-05 43.2 6.1 71 35-114 2-85 (312)
393 cd05290 LDH_3 A subgroup of L- 90.5 0.64 1.4E-05 43.2 6.1 32 37-69 1-32 (307)
394 PRK13581 D-3-phosphoglycerate 90.4 1.4 2.9E-05 44.0 8.6 63 35-114 140-202 (526)
395 PLN00141 Tic62-NAD(P)-related 90.4 0.48 1E-05 41.6 5.0 33 35-68 17-49 (251)
396 PRK13789 phosphoribosylamine-- 90.4 1.9 4E-05 41.8 9.4 93 34-134 3-96 (426)
397 TIGR01757 Malate-DH_plant mala 90.4 0.7 1.5E-05 44.4 6.4 24 35-58 44-67 (387)
398 COG1042 Acyl-CoA synthetase (N 90.3 1.9 4.1E-05 43.8 9.6 112 36-166 11-132 (598)
399 PRK06947 glucose-1-dehydrogena 90.3 1.4 3E-05 38.0 7.7 85 35-139 2-89 (248)
400 cd05294 LDH-like_MDH_nadp A la 90.2 1.6 3.4E-05 40.5 8.4 33 36-69 1-34 (309)
401 PLN02572 UDP-sulfoquinovose sy 90.1 0.52 1.1E-05 45.7 5.3 31 35-66 47-77 (442)
402 COG1086 Predicted nucleoside-d 90.1 2 4.4E-05 43.2 9.5 34 36-70 251-284 (588)
403 COG2403 Predicted GTPase [Gene 90.1 1.4 3.1E-05 42.3 8.0 161 33-207 4-179 (449)
404 cd00762 NAD_bind_malic_enz NAD 89.9 0.24 5.1E-06 45.0 2.5 21 36-57 26-46 (254)
405 TIGR01763 MalateDH_bact malate 89.9 1.5 3.2E-05 40.6 7.9 32 36-69 2-33 (305)
406 TIGR01202 bchC 2-desacetyl-2-h 89.8 2.5 5.4E-05 38.4 9.3 87 37-139 147-234 (308)
407 PLN02602 lactate dehydrogenase 89.8 1 2.2E-05 42.6 7.0 33 36-69 38-70 (350)
408 PRK06179 short chain dehydroge 89.7 6.7 0.00014 34.4 11.8 31 36-67 5-35 (270)
409 PRK07578 short chain dehydroge 89.7 2.4 5.2E-05 35.5 8.5 29 36-66 1-29 (199)
410 PRK00257 erythronate-4-phospha 89.7 1.5 3.3E-05 42.0 8.0 59 36-114 117-175 (381)
411 PTZ00075 Adenosylhomocysteinas 89.7 2.2 4.9E-05 42.1 9.3 66 35-116 254-319 (476)
412 PLN02989 cinnamyl-alcohol dehy 89.7 1.7 3.6E-05 39.5 8.0 32 35-67 5-36 (325)
413 PRK12825 fabG 3-ketoacyl-(acyl 89.6 1.3 2.9E-05 37.6 7.0 34 35-69 6-39 (249)
414 PRK05866 short chain dehydroge 89.6 4.7 0.0001 36.4 10.9 30 36-66 41-70 (293)
415 TIGR01142 purT phosphoribosylg 89.5 0.86 1.9E-05 42.6 6.2 28 37-66 1-28 (380)
416 PRK01368 murD UDP-N-acetylmura 89.5 6.9 0.00015 38.1 12.6 30 36-69 7-36 (454)
417 PLN02986 cinnamyl-alcohol dehy 89.5 1.6 3.5E-05 39.6 7.8 33 36-69 6-38 (322)
418 PRK13940 glutamyl-tRNA reducta 89.5 0.67 1.4E-05 44.9 5.5 68 35-115 181-251 (414)
419 COG0677 WecC UDP-N-acetyl-D-ma 89.4 2 4.3E-05 41.6 8.4 105 36-150 10-144 (436)
420 PLN02494 adenosylhomocysteinas 89.4 1.8 3.8E-05 42.8 8.3 83 35-133 254-337 (477)
421 PRK02705 murD UDP-N-acetylmura 89.3 7.8 0.00017 37.2 12.8 30 37-69 2-31 (459)
422 PF13607 Succ_CoA_lig: Succiny 89.3 3.5 7.5E-05 33.9 8.9 101 37-156 3-121 (138)
423 PRK07825 short chain dehydroge 89.2 2.9 6.2E-05 36.8 9.0 79 36-139 6-87 (273)
424 PRK12938 acetyacetyl-CoA reduc 89.2 6.3 0.00014 33.8 11.0 82 37-140 5-91 (246)
425 COG1893 ApbA Ketopantoate redu 89.2 3.2 7E-05 38.5 9.7 107 36-154 1-116 (307)
426 PRK15469 ghrA bifunctional gly 89.2 3.1 6.8E-05 38.6 9.5 61 36-113 137-197 (312)
427 PLN00198 anthocyanidin reducta 89.2 1.5 3.3E-05 40.1 7.5 37 29-67 4-40 (338)
428 PRK08591 acetyl-CoA carboxylas 89.1 3.4 7.4E-05 39.8 10.1 120 35-159 2-130 (451)
429 PRK11154 fadJ multifunctional 89.1 2.5 5.5E-05 43.6 9.7 35 33-69 307-341 (708)
430 PRK10669 putative cation:proto 89.1 7.1 0.00015 38.9 12.7 125 35-175 417-547 (558)
431 cd01488 Uba3_RUB Ubiquitin act 89.1 2.1 4.4E-05 39.7 8.1 30 37-68 1-30 (291)
432 PLN02650 dihydroflavonol-4-red 89.0 1.5 3.1E-05 40.5 7.3 33 35-68 5-37 (351)
433 PRK12829 short chain dehydroge 89.0 3.4 7.3E-05 35.8 9.2 81 36-139 12-95 (264)
434 KOG1014 17 beta-hydroxysteroid 89.0 0.9 2E-05 42.4 5.7 80 38-139 52-135 (312)
435 TIGR01408 Ube1 ubiquitin-activ 88.9 2.5 5.4E-05 45.5 9.7 98 35-140 419-554 (1008)
436 PRK07454 short chain dehydroge 88.8 4.8 0.0001 34.6 10.0 86 34-140 5-93 (241)
437 PF11017 DUF2855: Protein of u 88.8 2.9 6.3E-05 39.2 9.0 99 36-143 137-238 (314)
438 COG1087 GalE UDP-glucose 4-epi 88.8 1.7 3.8E-05 40.6 7.4 72 36-114 1-75 (329)
439 PRK03562 glutathione-regulated 88.8 9.9 0.00021 38.7 13.5 120 35-171 400-526 (621)
440 PF02254 TrkA_N: TrkA-N domain 88.7 4.3 9.3E-05 31.0 8.7 109 38-163 1-116 (116)
441 PRK05565 fabG 3-ketoacyl-(acyl 88.7 2.2 4.8E-05 36.4 7.8 85 36-140 6-93 (247)
442 PLN03154 putative allyl alcoho 88.7 4.3 9.4E-05 37.6 10.2 96 37-138 161-260 (348)
443 cd08295 double_bond_reductase_ 88.7 4.1 8.9E-05 37.2 9.9 95 36-138 153-253 (338)
444 PRK09134 short chain dehydroge 88.5 6.6 0.00014 34.2 10.8 34 34-68 8-41 (258)
445 COG0702 Predicted nucleoside-d 88.5 0.68 1.5E-05 40.4 4.4 33 36-69 1-33 (275)
446 TIGR03589 PseB UDP-N-acetylglu 88.4 2.8 6E-05 38.5 8.6 30 36-65 5-35 (324)
447 PRK05557 fabG 3-ketoacyl-(acyl 88.3 6.4 0.00014 33.4 10.4 32 36-68 6-37 (248)
448 PRK07326 short chain dehydroge 88.3 3.3 7.1E-05 35.4 8.6 30 36-66 7-36 (237)
449 TIGR03366 HpnZ_proposed putati 88.3 2.1 4.6E-05 38.2 7.6 93 37-138 123-220 (280)
450 PRK09009 C factor cell-cell si 88.3 1.2 2.7E-05 38.1 5.9 30 36-65 1-31 (235)
451 PRK11790 D-3-phosphoglycerate 88.3 1.5 3.2E-05 42.4 6.9 59 36-113 152-210 (409)
452 cd08230 glucose_DH Glucose deh 88.2 2.3 4.9E-05 39.3 8.0 94 36-139 174-272 (355)
453 cd08293 PTGR2 Prostaglandin re 88.2 1.5 3.2E-05 39.9 6.7 98 36-138 156-256 (345)
454 PRK07023 short chain dehydroge 88.2 0.75 1.6E-05 39.8 4.5 31 35-66 1-31 (243)
455 PRK11730 fadB multifunctional 88.2 3.2 6.9E-05 42.9 9.7 32 34-68 312-343 (715)
456 COG0039 Mdh Malate/lactate deh 88.1 1.7 3.7E-05 40.6 7.0 32 36-69 1-33 (313)
457 PRK06196 oxidoreductase; Provi 87.8 4.2 9.1E-05 36.9 9.4 30 36-66 27-56 (315)
458 KOG2733 Uncharacterized membra 87.8 1.9 4.1E-05 41.3 7.1 129 35-172 5-158 (423)
459 PRK00421 murC UDP-N-acetylmura 87.8 5 0.00011 38.8 10.4 32 35-69 7-39 (461)
460 PRK08017 oxidoreductase; Provi 87.8 12 0.00025 32.3 11.8 29 37-66 4-32 (256)
461 PF07994 NAD_binding_5: Myo-in 87.8 0.61 1.3E-05 43.2 3.8 41 119-160 189-229 (295)
462 PF02558 ApbA: Ketopantoate re 87.7 2.2 4.7E-05 34.4 6.7 97 38-152 1-114 (151)
463 TIGR01408 Ube1 ubiquitin-activ 87.6 3.1 6.8E-05 44.8 9.5 32 36-69 25-56 (1008)
464 PRK08410 2-hydroxyacid dehydro 87.6 1.7 3.7E-05 40.3 6.7 60 35-114 145-204 (311)
465 PRK06523 short chain dehydroge 87.5 9.7 0.00021 33.0 11.2 30 36-66 10-39 (260)
466 COG0151 PurD Phosphoribosylami 87.5 6.6 0.00014 38.2 10.7 121 36-166 1-125 (428)
467 TIGR00518 alaDH alanine dehydr 87.4 2.1 4.5E-05 40.7 7.3 42 25-69 157-198 (370)
468 PRK06487 glycerate dehydrogena 87.3 1.7 3.6E-05 40.5 6.5 57 36-114 149-205 (317)
469 PRK12464 1-deoxy-D-xylulose 5- 87.3 5.7 0.00012 38.2 10.1 96 40-136 1-116 (383)
470 PRK12939 short chain dehydroge 87.2 9.8 0.00021 32.5 10.9 84 36-140 8-94 (250)
471 PRK06841 short chain dehydroge 87.1 4.5 9.8E-05 35.0 8.8 30 36-66 16-45 (255)
472 cd08237 ribitol-5-phosphate_DH 87.1 2.4 5.2E-05 39.1 7.4 89 37-139 166-259 (341)
473 PRK06719 precorrin-2 dehydroge 87.0 7.1 0.00015 32.5 9.5 82 36-132 14-96 (157)
474 PRK00683 murD UDP-N-acetylmura 86.9 2.4 5.2E-05 40.6 7.5 136 36-194 4-158 (418)
475 PRK12767 carbamoyl phosphate s 86.8 7.7 0.00017 35.3 10.5 30 35-66 1-31 (326)
476 PRK06932 glycerate dehydrogena 86.8 1.7 3.7E-05 40.3 6.2 58 36-114 148-205 (314)
477 PLN02306 hydroxypyruvate reduc 86.7 2.1 4.6E-05 41.0 7.0 70 36-114 166-244 (386)
478 PRK09186 flagellin modificatio 86.5 4.8 0.0001 34.8 8.6 30 36-66 5-34 (256)
479 PLN02253 xanthoxin dehydrogena 86.5 5.5 0.00012 35.1 9.2 30 36-66 19-48 (280)
480 PRK00005 fmt methionyl-tRNA fo 86.4 1.8 3.9E-05 40.0 6.1 70 36-114 1-86 (309)
481 PRK06139 short chain dehydroge 86.3 6.6 0.00014 36.4 9.9 81 36-139 8-93 (330)
482 PRK07985 oxidoreductase; Provi 86.3 12 0.00025 33.8 11.3 85 36-139 50-137 (294)
483 PF04131 NanE: Putative N-acet 86.1 6.9 0.00015 34.2 9.1 97 50-165 22-153 (192)
484 PRK09880 L-idonate 5-dehydroge 86.1 9.6 0.00021 35.0 10.8 91 37-138 172-268 (343)
485 PRK12742 oxidoreductase; Provi 86.1 5.5 0.00012 33.9 8.7 30 36-66 7-36 (237)
486 PRK06199 ornithine cyclodeamin 86.0 2.1 4.7E-05 40.9 6.6 96 36-140 156-263 (379)
487 cd08292 ETR_like_2 2-enoyl thi 86.0 2.5 5.5E-05 37.7 6.8 95 36-138 141-240 (324)
488 PRK08628 short chain dehydroge 86.0 4.1 8.8E-05 35.4 7.9 83 36-140 8-93 (258)
489 cd01080 NAD_bind_m-THF_DH_Cycl 86.0 2.9 6.3E-05 35.4 6.7 33 34-69 43-76 (168)
490 COG2130 Putative NADP-dependen 85.9 4.5 9.8E-05 38.0 8.4 32 37-69 153-184 (340)
491 PRK12827 short chain dehydroge 85.9 5.7 0.00012 33.9 8.7 89 35-140 6-97 (249)
492 PRK07890 short chain dehydroge 85.9 3.9 8.5E-05 35.3 7.8 30 36-66 6-35 (258)
493 PRK12743 oxidoreductase; Provi 85.9 9.6 0.00021 33.2 10.3 84 36-139 3-89 (256)
494 TIGR01470 cysG_Nterm siroheme 85.8 7.1 0.00015 34.0 9.3 86 36-134 10-98 (205)
495 PRK07806 short chain dehydroge 85.6 11 0.00024 32.4 10.4 31 36-67 7-37 (248)
496 cd05311 NAD_bind_2_malic_enz N 85.4 4.2 9.2E-05 35.9 7.8 33 36-70 26-60 (226)
497 PRK06823 ornithine cyclodeamin 85.4 2.6 5.6E-05 39.3 6.7 91 36-137 129-223 (315)
498 PRK12429 3-hydroxybutyrate deh 85.3 4.8 0.0001 34.7 8.0 30 36-66 5-34 (258)
499 PLN02928 oxidoreductase family 85.3 2.4 5.2E-05 40.0 6.5 67 36-114 160-234 (347)
500 TIGR03451 mycoS_dep_FDH mycoth 85.2 12 0.00025 34.6 11.0 94 36-138 178-278 (358)
No 1
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-66 Score=462.02 Aligned_cols=211 Identities=27% Similarity=0.338 Sum_probs=195.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
+||||+|+||+|||||.+++++.+.++++|+++++++ ..|.|++++++.+ ..++++++|+.... .++||+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~------~~~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVK------ADADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhcc------cCCCEE
Confidence 4899999999999999999999999999999999953 5688999999885 89999999977666 489999
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC--CCCeEE
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEI 188 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~--~~DiEI 188 (257)
||||+|+.+++++++|+++|+++|||||||++++++.|++++++ +|+|+|||||+||||+.++++.+++. +|||||
T Consensus 74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI 151 (266)
T COG0289 74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI 151 (266)
T ss_pred EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 99999999999999999999999999999999999999999999 99999999999999988887666653 689999
Q ss_pred EeccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEe
Q 025154 189 VESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSK 249 (257)
Q Consensus 189 iE~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h 249 (257)
+|+|||+|+|||||||+++++ |.|+|.+++|.+++|||||+|+|+|||+ |+++||+|||+|
T Consensus 152 iE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~GE~iei~H 231 (266)
T COG0289 152 IEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRH 231 (266)
T ss_pred hhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCCCCceeEEeecCCcceeEEEEEecCCcEEEEEE
Confidence 999999999999999999953 5788999999999999999999999999 999999999999
Q ss_pred ecCC
Q 025154 250 ILPS 253 (257)
Q Consensus 250 ~~~~ 253 (257)
+--|
T Consensus 232 ~A~s 235 (266)
T COG0289 232 RATS 235 (266)
T ss_pred eecc
Confidence 8654
No 2
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=2.8e-57 Score=409.33 Aligned_cols=212 Identities=26% Similarity=0.349 Sum_probs=188.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
||||+|+|++||||+.+++.+.+.++++|++++|+. ..+++++++.+.. +.++++++|++++ . ..+||||
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI 73 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI 73 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence 589999998899999999999989999999999942 3366777777653 5689999999998 3 3799999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC--CCCCeEEE
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF--HYKNVEIV 189 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~--~~~DiEIi 189 (257)
|||+|+.+.++++.|+++|+|+|+|||||++++.++|.++|+++|+|++++||||+|||+|.++++.+++ .+||+||+
T Consensus 74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~ 153 (266)
T TIGR00036 74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII 153 (266)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence 9999999999999999999999999999999999999999999999999999999999997777655544 35899999
Q ss_pred eccCCCCCCCCCccHHHHHH---------------hhhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEee
Q 025154 190 ESRPNARVRYMTRTLISMQV---------------CLRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKI 250 (257)
Q Consensus 190 E~HH~~K~DapSGTa~~l~~---------------~~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~ 250 (257)
|+|||+|+|+|||||++|+. |.|++..++|.+++|||||+|+|+|+|+ |.++||+|||+|.
T Consensus 154 E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~i~i~s~R~g~i~g~h~v~f~~~~e~i~i~H~ 233 (266)
T TIGR00036 154 ELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHR 233 (266)
T ss_pred eeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCCCccceEEEecCCceEEEEEEEcCCCeEEEEEEE
Confidence 99999999999999999964 2355666788889999999999999999 8999999999998
Q ss_pred cCC
Q 025154 251 LPS 253 (257)
Q Consensus 251 ~~~ 253 (257)
--+
T Consensus 234 a~~ 236 (266)
T TIGR00036 234 ASS 236 (266)
T ss_pred ECc
Confidence 654
No 3
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=1.7e-52 Score=376.25 Aligned_cols=205 Identities=26% Similarity=0.310 Sum_probs=176.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
||||+|+|++|+||+.+++.+.+.++++|++++|+.... .... ...++++++|++++++ ++|||||||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence 689999998899999999999888999999999964211 1111 1457788999999984 699999999
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC--CCCeEEEecc
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIVESR 192 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~--~~DiEIiE~H 192 (257)
+|+.+.+++..|+++|+|+|+|||||++++.++|.+++++ +|++++||||+|+|++.++++.+.+. .||+||+|+|
T Consensus 69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~--~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H 146 (257)
T PRK00048 69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKK--IPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH 146 (257)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcC--CCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9999999999999999999999999999999999997756 99999999999999877766555442 3899999999
Q ss_pred CCCCCCCCCccHHHHHHh---------------hhccccCCCCCCCceeeeeecCCccee----eccCCcEEEEEeecCC
Q 025154 193 PNARVRYMTRTLISMQVC---------------LRHIYLYPKFQNNNSFHTKRKLKIASS----IIGVGEILILSKILPS 253 (257)
Q Consensus 193 H~~K~DapSGTa~~l~~~---------------~r~g~~~~r~~~~Igi~s~R~G~IvG~----f~g~~E~iel~h~~~~ 253 (257)
||+|+|+|||||++|+.. .|.|..++|.+++|+|||+|+|+|+|+ |.++||+|||+|.--|
T Consensus 147 H~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~R~g~~~g~h~v~f~~~~e~i~i~H~a~~ 226 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATS 226 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCCccCCcCCCCccEEEEEcCCceEEEEEEEecCCcEEEEEEEECc
Confidence 999999999999999653 233555677788999999999999999 8999999999998654
No 4
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=2.2e-52 Score=377.17 Aligned_cols=203 Identities=17% Similarity=0.145 Sum_probs=177.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCeee------ecCHHHHHhccccCCCcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA 108 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D 108 (257)
+||+|+||+||||+++++++.. ++++||++ +|++..+.|.+++.|. ++++ +++++++++ ..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence 5899999999999999999887 89999998 8876667788888753 7888 899999986 3599
Q ss_pred -EEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCC-----
Q 025154 109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH----- 182 (257)
Q Consensus 109 -VvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~----- 182 (257)
|+||||+|+++++++++|+++|+|+|+|||||++++.++|.+. .++|+|||||||+|+||++++++.++++
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f 147 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF 147 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999988888554 3499999999999999987776655442
Q ss_pred -CCCeEEEeccCCCCCCCCCccHHHHHH--------hhhccccCCCCCC-CceeeeeecCCcce---e----eccCCcE-
Q 025154 183 -YKNVEIVESRPNARVRYMTRTLISMQV--------CLRHIYLYPKFQN-NNSFHTKRKLKIAS---S----IIGVGEI- 244 (257)
Q Consensus 183 -~~DiEIiE~HH~~K~DapSGTa~~l~~--------~~r~g~~~~r~~~-~Igi~s~R~G~IvG---~----f~g~~E~- 244 (257)
+||+||+|+||++|+|+ ||||++|+. |+|+++.++|+++ +|||+++|+ +++| + |.+++|+
T Consensus 148 ~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~-~~vgGh~~Htv~f~s~~e~i 225 (275)
T TIGR02130 148 AGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPE-EHLGGHAFHLYHLDSADGTV 225 (275)
T ss_pred CCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCcccccccCCCCCccceEEecC-cccCCCccEEEEEecCCCeE
Confidence 47999999999999999 999999965 4577888889887 999999999 5555 6 8999999
Q ss_pred -EEEEeecCC
Q 025154 245 -LILSKILPS 253 (257)
Q Consensus 245 -iel~h~~~~ 253 (257)
|||+|+--|
T Consensus 226 ~iel~H~A~s 235 (275)
T TIGR02130 226 HFEFQHNVCG 235 (275)
T ss_pred EEEEEEEECc
Confidence 699998654
No 5
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=6e-52 Score=375.86 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=177.3
Q ss_pred ccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeee--cCHHHHHhcccc
Q 025154 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQ 103 (257)
Q Consensus 27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~~~g~~~~~gv~v~--~dl~~~l~~~~~ 103 (257)
++.+|+.+.+||+|.||+||||+++++.+.+ ++++||+++|+...|.+.+ ++.| .+++++ +|+++++.++.
T Consensus 3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g----~~v~~~~~~dl~~~l~~~~- 76 (286)
T PLN02775 3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCG----VEVRLVGPSEREAVLSSVK- 76 (286)
T ss_pred CcCCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceecc----ceeeeecCccHHHHHHHhh-
Confidence 3456778889999999999999999999998 9999999999765566666 5554 278888 99999996411
Q ss_pred CCCcc-EEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC-
Q 025154 104 SKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF- 181 (257)
Q Consensus 104 ~~~~D-VvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~- 181 (257)
+..+| |+||||+|+++++++++|+++|+|+|+|||||+++|++++ ++++++|+|||||||+|+|||+++++.+++
T Consensus 77 ~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~ 153 (286)
T PLN02775 77 AEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQ 153 (286)
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHh
Confidence 12699 9999999999999999999999999999999999876555 444569999999999999998777655443
Q ss_pred -----CCCCeEEEeccCCCCCCCCCccHHHHHHh--------hhccccCCCC----CCCceee--eeecCCccee----e
Q 025154 182 -----HYKNVEIVESRPNARVRYMTRTLISMQVC--------LRHIYLYPKF----QNNNSFH--TKRKLKIASS----I 238 (257)
Q Consensus 182 -----~~~DiEIiE~HH~~K~DapSGTa~~l~~~--------~r~g~~~~r~----~~~Igi~--s~R~G~IvG~----f 238 (257)
.+||+||+|.||++|+|+ ||||++++.. .|.++...|+ .++|||+ ++|||+ + |
T Consensus 154 l~~~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~---~HtV~f 229 (286)
T PLN02775 154 FPGAFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHA---FHTYRL 229 (286)
T ss_pred cccccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCcccccccccccCccccccccceeeecccCCC---cEEEEE
Confidence 358999999999999999 9999999753 2444333443 4489995 999999 5 8
Q ss_pred ccCCcE--EEEEeecCC
Q 025154 239 IGVGEI--LILSKILPS 253 (257)
Q Consensus 239 ~g~~E~--iel~h~~~~ 253 (257)
.++||+ |||+|+--+
T Consensus 230 ~~~~E~~~iel~H~A~s 246 (286)
T PLN02775 230 TSPDGTVSFEFQHNVCG 246 (286)
T ss_pred ecCCCeEEEEEEEEeCc
Confidence 999999 999998654
No 6
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=100.00 E-value=3.4e-33 Score=225.56 Aligned_cols=121 Identities=36% Similarity=0.603 Sum_probs=108.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+|+|++||||+.+++.+.++++++|++++++. ..|+|++++++.. +.++++++|++++++ .+||+||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence 79999998899999999999999999999999954 4799999999985 889999999999996 5999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf 165 (257)
||+|+.+.+++++|+++|+|+|+|||||+++|.++|++++++ +|+||||||
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf 124 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF 124 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence 999999999999999999999999999999999999999999 999999998
No 7
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=99.89 E-value=9.7e-24 Score=172.61 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcC---CCCCeEEEeccCCCCCCCCCccHHHHHHhhhccc--------cCCC-CCCCceeeeeecCCcc
Q 025154 168 GSILLQQAAISASF---HYKNVEIVESRPNARVRYMTRTLISMQVCLRHIY--------LYPK-FQNNNSFHTKRKLKIA 235 (257)
Q Consensus 168 Gvnll~~~a~~l~~---~~~DiEIiE~HH~~K~DapSGTa~~l~~~~r~g~--------~~~r-~~~~Igi~s~R~G~Iv 235 (257)
|||||+++++.+++ .+||+||+|+||++|+|+|||||++|+....+.. ...| ++++|+|+|+|+|+|+
T Consensus 1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~i~v~s~R~g~i~ 80 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSEVARGGREQENEIGVHSVRGGGIV 80 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHHHEEECCGETTCEEEEEEE-TT--
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccccccccccCCccceEEEEEcCCCC
Confidence 89987776555443 3599999999999999999999999986432211 1222 5789999999999999
Q ss_pred ee----eccCCcEEEEEeecCC
Q 025154 236 SS----IIGVGEILILSKILPS 253 (257)
Q Consensus 236 G~----f~g~~E~iel~h~~~~ 253 (257)
|+ |.+++|+|||+|.--|
T Consensus 81 G~H~V~f~~~~E~i~l~H~a~s 102 (132)
T PF05173_consen 81 GEHEVIFGSPGETIELTHRAHS 102 (132)
T ss_dssp EEEEEEEEETTEEEEEEEEESS
T ss_pred EEEEEEEcCCCcEEEEEEEeCC
Confidence 99 8999999999998654
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.64 E-value=3.7e-15 Score=134.77 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=99.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
||||+|+|+ |+||+.+++.+...++++|++++++........... ..++++++|++++ + .++|+||+||
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~-----~~~DvVve~t 69 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-P-----QRPDLVVECA 69 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-c-----cCCCEEEECC
Confidence 689999996 999999999999889999999997532111111111 1257889999988 5 4899999999
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~s-~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
.+..+.+++..++++|+++|++++| ++ .+..++|.++|+++|..+++.+.+--|..++
T Consensus 70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l 129 (265)
T PRK13303 70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDAL 129 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHH
Confidence 9999999999999999999999997 55 4445789999999999888844444333344
No 9
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.62 E-value=6.4e-15 Score=116.08 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=99.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
|||+|+|+ |.+|+.+.+.+... +++++++++|+.. .....+. ...+++.|+|++++++. .++|+|+.+|
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence 69999995 99999999888877 8999999999641 1222222 25688899999999975 5799999999
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEE
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~ 161 (257)
.+..+.+++..|+++|+++++.+| ..+.++.++|.++++++|+.+.+
T Consensus 71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999999999999 78999999999999998888765
No 10
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.49 E-value=7e-13 Score=119.88 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=102.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
||||+|+|+ |+||+.+++.+.... ++++++++|+.. ..+..+. +..++++++|+++++. ++|+|+++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a---~~~~~~~~~~~~ell~------~~DvVvi~ 68 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLA---SKTGAKACLSIDELVE------DVDLVVEC 68 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHH---HhcCCeeECCHHHHhc------CCCEEEEc
Confidence 689999995 999999999988764 899999998642 1222332 2356778899999884 79999999
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCC--CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~--s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
+.|+.+.+++..++++|+++++.++|. +++..++|.++|+++|..+++.+..-.|...+
T Consensus 69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i 129 (265)
T PRK13304 69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI 129 (265)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence 999999999999999999999988863 67777899999999999888876555556544
No 11
>PRK11579 putative oxidoreductase; Provisional
Probab=99.44 E-value=1.6e-12 Score=120.99 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=111.4
Q ss_pred CCceEEEEcCCChHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.++||||+|+ |.||+ .++..+...++++|++++|+.. ..+.+ .-.++++|+|+++++++ .++|+|+.
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I 70 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVI 70 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEE
Confidence 3689999995 99998 5788888889999999998641 11111 11246689999999974 57999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCc--hHHHHHHHHHHHHhcCCCCCeEEE
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL--SIGSILLQQAAISASFHYKNVEIV 189 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNf--SlGvnll~~~a~~l~~~~~DiEIi 189 (257)
.|.+..+.+++..|+++|+||+|.+| ..+.++.++|.++|+++|+.+.++.|+ .-.+.-++++.+. +...++..+
T Consensus 71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~ 148 (346)
T PRK11579 71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAE--GVLGEVAYF 148 (346)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhc--CCCCCeEEE
Confidence 99999999999999999999999999 788999999999999999888777664 4444445555422 123466556
Q ss_pred ecc
Q 025154 190 ESR 192 (257)
Q Consensus 190 E~H 192 (257)
+.|
T Consensus 149 ~~~ 151 (346)
T PRK11579 149 ESH 151 (346)
T ss_pred EEE
Confidence 654
No 12
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.43 E-value=2.9e-12 Score=117.54 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=112.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvI 111 (257)
.||||||+|+.|.+++.++..+...++ +++++++|+.. ..+..++ ..++++ .|+|++++++. .++|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~ 72 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY 72 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence 479999999633666779988888777 79999999642 1122232 256664 89999999985 5689999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC--CCCCeEE
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF--HYKNVEI 188 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~--~~~DiEI 188 (257)
..|++..+.+++..|+++|+||+|.+| ..+.++.++|.++|+++|+.+.+.-|+-.-=. +++ ++.+-. ...++..
T Consensus 73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~-~~~-~k~li~~g~lG~v~~ 150 (342)
T COG0673 73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPA-VQA-LKELIDSGALGEVVS 150 (342)
T ss_pred EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHH-HHH-HHHHHhcCCcCceEE
Confidence 999999999999999999999999999 88999999999999998888777666544321 222 222221 2356666
Q ss_pred EeccCCCC
Q 025154 189 VESRPNAR 196 (257)
Q Consensus 189 iE~HH~~K 196 (257)
++.+....
T Consensus 151 ~~~~~~~~ 158 (342)
T COG0673 151 VQASFSRD 158 (342)
T ss_pred EEEEeecc
Confidence 66554443
No 13
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.38 E-value=4.5e-12 Score=118.43 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=101.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC----ee----e-e
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE----IP----V-M 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g----v~----v-~ 91 (257)
++||+|.| +|.+|+.+++.+.+. -+++|+++.|+. ..|-+..++.....+.+ .+ . .
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 58999999 599999999987653 248899999853 22434433221111111 10 0 1
Q ss_pred cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (257)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl 171 (257)
.++++++.. .++||+||||.++.+.++...++++|+|||++++|.-....++|.++|+++|++++|++|++.|+-+
T Consensus 81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 167788743 4799999999999999999999999999999999843445568889999999999999999999976
Q ss_pred HHHHH
Q 025154 172 LQQAA 176 (257)
Q Consensus 172 l~~~a 176 (257)
+.-+-
T Consensus 157 i~~l~ 161 (336)
T PRK08374 157 IGLLR 161 (336)
T ss_pred hHHHH
Confidence 54443
No 14
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.37 E-value=9.9e-12 Score=112.87 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=100.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
++||+|+| +|+||+.+++.+.. .++++|++++|+.. ..+.++. ..++. ..+++++++++ ++|+|+.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE 73 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence 48999999 59999999999887 48999999998641 1122222 13443 56789999985 6999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
.+.++.+.+++..++++|+++++.++|- .++.++|.++|+++|.++.+.+.|-.|...+
T Consensus 74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l 132 (271)
T PRK13302 74 AAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLGLDAV 132 (271)
T ss_pred CCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHhHHHH
Confidence 9999999999999999999999877662 2356789999999999999988888776543
No 15
>PRK10206 putative oxidoreductase; Provisional
Probab=99.34 E-value=9e-12 Score=116.41 Aligned_cols=144 Identities=20% Similarity=0.132 Sum_probs=107.9
Q ss_pred CceEEEEcCCChHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
|+||||+|+ |+++ +.++..+.. .++++|++++|+.. +..++. ..+ ++++|+|+++++++ .++|+|+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~---~~~~~~---~~~~~~~~~~~~~ell~~----~~iD~V~ 69 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHA---KPEEQA---PIYSHIHFTSDLDEVLND----PDVKLVV 69 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCCh---hHHHHH---HhcCCCcccCCHHHHhcC----CCCCEEE
Confidence 689999995 9977 456776644 47899999999642 111222 133 36789999999974 5799999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCch--HHHHHHHHHHHHhcCCCCCeEE
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISASFHYKNVEI 188 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfS--lGvnll~~~a~~l~~~~~DiEI 188 (257)
..|.+..+.+++..|+++|+||+|.++ ..+.++.++|.++|+++|+.+.+..|+- -.+.-++++.+. +..-++--
T Consensus 70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~ 147 (344)
T PRK10206 70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE 147 (344)
T ss_pred EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence 999999999999999999999999999 7788999999999999999988887744 334335555432 12334444
Q ss_pred Eec
Q 025154 189 VES 191 (257)
Q Consensus 189 iE~ 191 (257)
++.
T Consensus 148 i~~ 150 (344)
T PRK10206 148 VES 150 (344)
T ss_pred EEE
Confidence 444
No 16
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.29 E-value=3.8e-11 Score=112.36 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=102.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee------eecC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMSD 93 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v~------v~~d 93 (257)
++||+|+| +|.||+.+++.+.+.+ +++|++++|+. ..|.+..++.....+.+ +. .+.|
T Consensus 2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 58999999 5999999999987653 79999999953 22444433322111222 11 2348
Q ss_pred HHHHHhccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 94 LTMVLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
+++++++ .++|||||.|.+. ...++++.|+++|+|||+++.+......++|.++|+++|+.+++-+...-|
T Consensus 81 ~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 81 GLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 8998864 5799999988653 348999999999999999887766667789999999999999987777667
Q ss_pred HHHHHHHHHHh
Q 025154 169 SILLQQAAISA 179 (257)
Q Consensus 169 vnll~~~a~~l 179 (257)
+-++..+-+.+
T Consensus 157 lPii~~l~~~l 167 (341)
T PRK06270 157 MPIINLAKETL 167 (341)
T ss_pred hhHHHHHHhhc
Confidence 76655554333
No 17
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.28 E-value=6.4e-11 Score=110.08 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=110.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
++||+|+| +|+||+.+++.+.+.++++|+|++++...+ ..+ ...++..+.|.++++. ++|||+.+|
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~------~~~~v~~~~d~~e~l~------~iDVViIct 68 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLD------TETPVYAVADDEKHLD------DVDVLILCM 68 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHh------hcCCccccCCHHHhcc------CCCEEEEcC
Confidence 58999999 599999999999999999999999975211 111 1234444556666663 799999898
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCceEEEccCchHHHHH-HHHHHHHhcCCCCCe----E
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSIL-LQQAAISASFHYKNV----E 187 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnl-l~~~a~~l~~~~~Di----E 187 (257)
.+..+.+.+..++++|+|+|....- . .++..+.|+++|+++|-..+++.-+--|..- .+.+.+.+.+.+-+. .
T Consensus 69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~ 148 (324)
T TIGR01921 69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGP 148 (324)
T ss_pred CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCC
Confidence 8888899999999999999987542 2 2467889999999865566666677777763 444555555433222 4
Q ss_pred EEeccCCCCCCCCCc
Q 025154 188 IVESRPNARVRYMTR 202 (257)
Q Consensus 188 IiE~HH~~K~DapSG 202 (257)
-+..+|..-+|+-.|
T Consensus 149 g~s~ghs~a~~~~~G 163 (324)
T TIGR01921 149 GLSQGHSDAVRRIDG 163 (324)
T ss_pred CcCchhhhhhcccCC
Confidence 466788777775333
No 18
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.26 E-value=7.5e-11 Score=110.60 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=98.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
++||+|+|+ +||+.+++.+.+.+ +++|+|++|+.. +.+.+++ ..+|++.|+|++++++ ++|+++..
T Consensus 3 ~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~------d~Di~~V~ 69 (343)
T TIGR01761 3 VQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV 69 (343)
T ss_pred CcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhc------CCCEEEEE
Confidence 589999995 79999999998887 899999999641 2223333 3578889999999996 45543333
Q ss_pred C----ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154 114 T----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 114 T----~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a 176 (257)
+ .+..+.+.+..|+++|+||+++++= ..+|.++|.++|+++|+.+.+ ..|.-.+..++++.
T Consensus 70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i 134 (343)
T TIGR01761 70 VRSAIVGGQGSALARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFI 134 (343)
T ss_pred eCCCCCCccHHHHHHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHH
Confidence 2 3578899999999999999999993 368899999999999988887 44666665565554
No 19
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.17 E-value=1.2e-09 Score=114.48 Aligned_cols=136 Identities=19% Similarity=0.101 Sum_probs=105.3
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcCCCCCC---eee-ecCHHHH
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDMEQPLE---IPV-MSDLTMV 97 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~g~~~g~~~~~g---v~v-~~dl~~~ 97 (257)
.|.||+|+|| |+||+.+++.+...++.+ +|.+.|... .++..++.. -.+ +.+ +.|.+++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~--~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEG--IENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHh--cCCCceEEeecCCHHHH
Confidence 3679999996 999999999999888877 788888541 223333211 013 444 6677777
Q ss_pred HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH--HHHH
Q 025154 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQA 175 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl--l~~~ 175 (257)
.+.+ .++|+||..+.+..+.+.++.|+++|+|+|+.+ ++.++..+|.+.|+++|+.++..-+|.-|+.- ++++
T Consensus 643 ~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~ 717 (1042)
T PLN02819 643 LKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKM 717 (1042)
T ss_pred HHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHH
Confidence 6421 269999999999999999999999999999766 77788899999999999999999999999953 5555
Q ss_pred HHHh
Q 025154 176 AISA 179 (257)
Q Consensus 176 a~~l 179 (257)
....
T Consensus 718 Id~~ 721 (1042)
T PLN02819 718 IDDA 721 (1042)
T ss_pred HHhh
Confidence 5444
No 20
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.16 E-value=2.5e-10 Score=109.85 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=100.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK 105 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (257)
++||+|+| +|.||+.+++.+.+++ +++|++++++... + .. +. ...+..+++|+++++++ .
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~-~~---~~-~~~~~~~~~d~~~ll~d----~ 71 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-K-DR---GV-DLPGILLTTDPEELVND----P 71 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-h-cc---CC-CCcccceeCCHHHHhhC----C
Confidence 58999999 5999999998876543 6899999986421 1 11 01 12345678999999964 5
Q ss_pred CccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154 106 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (257)
Q Consensus 106 ~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~ 175 (257)
++|+||+.|. ++.+.++++.|+++|+|||+....+..++.++|.++|+++|+.++|.+...-|+-++..+
T Consensus 72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l 142 (426)
T PRK06349 72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKAL 142 (426)
T ss_pred CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHH
Confidence 7999999984 467799999999999999987667777888999999999999999887666666544443
No 21
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=99.16 E-value=7.2e-11 Score=93.54 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=82.7
Q ss_pred CCChHHHHHHHHHHhcC---CcEEEEEEecC-CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHh
Q 025154 43 AVKEIGRAAVIAVTKAR---GMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118 (257)
Q Consensus 43 a~GrMG~~i~~~i~~~~---~~eLvg~vd~~-~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~ 118 (257)
.+|.||+.+++.+.+.. +++|++++++. ....+.... ..+...+.+++++++. ..+|||||.|.++.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSEA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCchH
Confidence 15999999999998776 89999999975 111111111 1245678999999864 47999999999999
Q ss_pred HHHHHHHHHHcCCCeEEeCCCCCH--HHHHHHHHHhhhcCceEEE
Q 025154 119 VYDNVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 119 ~~~~~~~a~~~Gi~vViGTTG~s~--e~~~~L~~~a~~~gipvl~ 161 (257)
..+++..++++|++||+...+.-. ...++|.++|+++|+.++|
T Consensus 72 ~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 72 VAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 999999999999999987665433 6788999999999988876
No 22
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.15 E-value=1.9e-10 Score=107.72 Aligned_cols=96 Identities=23% Similarity=0.265 Sum_probs=75.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---------CCcchh-h---hhc-CCCCCCeeeecCHHHHHhc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGEDIG-M---VCD-MEQPLEIPVMSDLTMVLGS 100 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---------~g~d~g-~---~~g-~~~~~gv~v~~dl~~~l~~ 100 (257)
|+||+|+|+ |+|||.+++++.++++++|+++.|+.. .|.+.. . ... . ...+++++.++++++.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence 789999996 999999999999999999999998431 011100 0 000 1 1236788888888884
Q ss_pred cccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 101 ~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++|+|||||.+..+.+++..++++|+++|+-..
T Consensus 78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 799999999999999999999999999887554
No 23
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.13 E-value=1.7e-09 Score=97.90 Aligned_cols=125 Identities=9% Similarity=0.125 Sum_probs=98.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.+||+|+|+ |.||+.+++.+... ++++|+++.++.. .....+.+ .+++++|+++++. .++|+||+
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE 68 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE 68 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence 479999995 99999999988753 4599999988642 11222321 2678899999876 48999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCC-C-CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG-~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
..+++++.++...++++|+++|+..+| | +++-.++|.++|+++|..+.+.+-==-|.-.+
T Consensus 69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l 130 (267)
T PRK13301 69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYL 130 (267)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHH
Confidence 999999999999999999999999986 4 44556789999999998888866544444444
No 24
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=4.2e-09 Score=97.93 Aligned_cols=155 Identities=15% Similarity=0.047 Sum_probs=115.5
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CeeeecCHHHHHhccccCCC
Q 025154 32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA 106 (257)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~---gv~v~~dl~~~l~~~~~~~~ 106 (257)
....+|+||+|+ |+|++-.++.+...| +++++++.++. ...+-+++. .. ..++|.++|+++.+ ..
T Consensus 3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s--~~~A~~fAq---~~~~~~~k~y~syEeLakd----~~ 72 (351)
T KOG2741|consen 3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPS--LERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE 72 (351)
T ss_pred CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEeccc--HHHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence 345689999996 999999999998888 99999999974 233445552 33 45789999999864 67
Q ss_pred ccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEc--cCchHHHHHHHHHHHHhcCCC
Q 025154 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA--PTLSIGSILLQQAAISASFHY 183 (257)
Q Consensus 107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~s--pNfSlGvnll~~~a~~l~~~~ 183 (257)
+|||..-+....+++.+..++++|+||.+.++ ..+.+|.++|-++|+++|+-+..+ .=|+-=+.-++.+.. .+.+
T Consensus 73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~ 150 (351)
T KOG2741|consen 73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL 150 (351)
T ss_pred cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence 89988677778899999999999999999998 899999999999999977433310 111111112333332 3346
Q ss_pred CCeEEEeccCCCCCC
Q 025154 184 KNVEIVESRPNARVR 198 (257)
Q Consensus 184 ~DiEIiE~HH~~K~D 198 (257)
-|+.-++.-|+.-..
T Consensus 151 Gdvk~v~~~~~f~~~ 165 (351)
T KOG2741|consen 151 GDVKSVEVEFGFPFP 165 (351)
T ss_pred ccceEEEEecCCCcc
Confidence 688888887776554
No 25
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.95 E-value=1.9e-08 Score=88.93 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=95.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
|+|+++|| |.+|+.+.+.+... -+++++++.|+.. +.+.++.. ..+....++++++++ .+|++|+..
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA 68 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA 68 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence 68999995 99999999988755 4699999999642 22222221 223333488999985 799999999
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCCC-CC-HHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTTG-~s-~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+|+++.+++..++++|+++++=.+| |. ++-.++++++|+..|..+.+.+.---|+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 9999999999999999999988886 44 4445779999999998888766554454
No 26
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.94 E-value=2.1e-08 Score=91.95 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=90.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
++||+|+|+ |+||+.++..+.+.+++++++++|.... .+.-..+ ...|++. ++++++++++ .++|+|++.
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~e-s~~la~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia 71 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPE-SDGLARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA 71 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcc-cHHHHHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence 479999995 9999999877777899999999985421 1110122 2467765 5689999864 579999999
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCCC----HHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s----~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
|.+..+.+++..++++|+++++.|+-+. ..... +++..+..++.++-.+|-+ .+-++
T Consensus 72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~ 132 (285)
T TIGR03215 72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIV 132 (285)
T ss_pred CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHH
Confidence 9999999999999999999999988541 00011 2333333447788777776 44333
No 27
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.89 E-value=3.2e-08 Score=89.99 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=99.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.|+|.+.| +|..|...++.+.++|+++|||++++ .+.|+|+++++|.. ++||...++++..++- ...+++.+
T Consensus 2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt----l~~~~~y~ 75 (350)
T COG3804 2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT----LADAVIYA 75 (350)
T ss_pred CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec----cccceeee
Confidence 37899999 79999999999999999999999995 37799999999996 5999999999998873 23345555
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCC------CCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTT------G~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
--.|+ .+..+.++..|+|||+-.+ +..+|..+++.++|+++|..-|+....--|
T Consensus 76 ~~~~~--~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pG 135 (350)
T COG3804 76 PLLPS--VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPG 135 (350)
T ss_pred cccch--HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCcc
Confidence 54563 7888899999999985321 346788889999999999877754433333
No 28
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=98.86 E-value=2.1e-08 Score=89.24 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=84.5
Q ss_pred CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 60 ~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
+++|++++|+.. ..+.++. +.+|+++++|++++++ .++|+|+..|.+..+.+++..++++|++++|.++|
T Consensus 1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 478999999641 1222333 2467789999999986 47999999999999999999999999999999986
Q ss_pred -C-CHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 140 -~-s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
| +.++.++|.++|+++|..+++.++|--|...+
T Consensus 71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l 105 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL 105 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH
Confidence 4 56888999999999999999998777776554
No 29
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.85 E-value=3.5e-08 Score=91.10 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=98.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID 112 (257)
.++||+|+| +|.+|+.++..+...++++|++++|.+.. .+.-..+ ...|++. +++++++++.- .-.++|+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~e-s~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~ 76 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPE-SDGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFD 76 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChh-hHHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEE
Confidence 368999999 69999998888888899999999986421 1111122 2467876 58899998510 0026899999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCC---------CHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 183 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~---------s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~ 183 (257)
.|.+..+.+++..++++|++++.-|+-+ +.++ .....++.++-+||=+.= .++..+.+ .
T Consensus 77 AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~------~~~~~~~~iia~p~~ati-----~~v~Al~~-v 144 (302)
T PRK08300 77 ATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDE------HLDAPNVNMVTCGGQATI-----PIVAAVSR-V 144 (302)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHH------HhcccCCCEEECccHHHH-----HHHHHhcc-c
Confidence 9999999999999999999999998854 4432 233345788888886632 22223332 2
Q ss_pred CCeEEEecc
Q 025154 184 KNVEIVESR 192 (257)
Q Consensus 184 ~DiEIiE~H 192 (257)
.++++-|..
T Consensus 145 ~~~~~~eIv 153 (302)
T PRK08300 145 APVHYAEIV 153 (302)
T ss_pred CcCceeeee
Confidence 345666665
No 30
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.85 E-value=1.3e-08 Score=94.97 Aligned_cols=123 Identities=22% Similarity=0.258 Sum_probs=88.5
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---------CCcc---------hhhhhcCCCCCCeeeecCH
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---------VGED---------IGMVCDMEQPLEIPVMSDL 94 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---------~g~d---------~g~~~g~~~~~gv~v~~dl 94 (257)
..++||+++|+ |.||+.++..+...++++++++.|... .|.+ +...+...+...+.+++|.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 45899999996 999999999999999999999988421 1111 1111111123457788999
Q ss_pred HHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154 95 TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s 162 (257)
+.++.. ...||+||.| .|+.-..+...|+.+|+++|+=---.+----..|++.|.+ .+++||
T Consensus 94 ~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS 156 (438)
T COG4091 94 ELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYS 156 (438)
T ss_pred hhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEe
Confidence 998875 6799999999 7999999999999999999972111110011357788888 667764
No 31
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=98.82 E-value=4.3e-08 Score=91.03 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=97.3
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
+...||.|.|.|||-|+.+.+... .-+..+|+.+.+..-|.+.. ..|+|+|++++++.+. ..+|+.|-
T Consensus 27 ~~~t~v~vqGitg~~g~~h~~~~~-~ygt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI 94 (317)
T PTZ00187 27 NKNTKVICQGITGKQGTFHTEQAI-EYGTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVI 94 (317)
T ss_pred cCCCeEEEecCCChHHHHHHHHHH-HhCCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEE
Confidence 345699999999999999999766 45899999998765343221 1279999999999863 35999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhh-hcCceEEEccCchHHHH
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSI 170 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViG-TTG~s~e~~~~L~~~a~-~~gipvl~spNfSlGvn 170 (257)
|..|..+.+.+..|+++|++.++- |.||.+.+..+++++++ +.|+ .++.|| ++|+.
T Consensus 95 ~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~-rliGPN-c~Gii 152 (317)
T PTZ00187 95 YVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT-RLIGPN-CPGII 152 (317)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC-EEECCC-CceEE
Confidence 999999999999999999998655 55898766666777765 4565 577888 56764
No 32
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.80 E-value=7.1e-08 Score=90.05 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=95.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCeeeec--CHHHHHh
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG 99 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~g~~~g~~~~--~gv~v~~--dl~~~l~ 99 (257)
|||+|+|+ |.+|+.+++.+.+. .+++|+++.|+. ..|-+..++.....+ ......+ +++++++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 59999995 99999999988764 578999999853 234444443211111 0001112 6777775
Q ss_pred ccccCCCccEEEEcCCh-H---hHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154 100 SISQSKARAVVIDFTDA-S---TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT~p-~---~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~ 175 (257)
.++||+||.|.. . ....+++.++++|++||..--|.-....++|.++|+++|+.+.|.++..=|+-++.-+
T Consensus 80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 489999999842 1 2578889999999999975445444567889999999999999999888787665533
No 33
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.77 E-value=6.9e-08 Score=77.15 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=71.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCC-CCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQ-PLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~~~g~~~-~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF 113 (257)
||+|+||+|.+|+.+++++.++|.++++.++.+.. .|+.......... ...+.+.+ +.++ +. ++|+|+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE-LS------DVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH-HT------TESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH-hh------cCCEEEec
Confidence 79999999999999999999999999999999765 6777766543100 01233433 3343 33 79999988
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
+....+.+++..+++.|+.||==++.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSST
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHH
Confidence 88889999999999999976643333
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.67 E-value=1.3e-07 Score=88.61 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.|+||+|+||+|.+|+.+++.+..+|+++|+++.++...++.+.+..+ .....+ ..++++++... .++|+|+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~-----~~vD~Vf~ 74 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVD-LVLEPLDPEIL-----AGADVVFL 74 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccC-ceeecCCHHHh-----cCCCEEEE
Confidence 378999999999999999999999999999999985444444432211 100001 12444444322 37999998
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
++.+..+.+.+..++++|++||-=+..|
T Consensus 75 alP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 75 ALPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 8999999999999999999988655544
No 35
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.66 E-value=1.8e-07 Score=85.07 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=96.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
.||.|.|.+|+||+.+.+...+. +..+|+.+.+.+.|.. -.++|||+++++++++ ..+|+-+.|-+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~Vp 74 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFVP 74 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEecC
Confidence 48999999999999999998876 9999999987654433 2468999999999986 57999999999
Q ss_pred hHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccC
Q 025154 116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 164 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spN 164 (257)
|..+.+-+..|+++|+++|+.-| |....+.-++.+.+++.| ..++.||
T Consensus 75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g-~~iiGPn 123 (293)
T COG0074 75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG-TRLIGPN 123 (293)
T ss_pred cHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC-CEEECCC
Confidence 99999999999999999887755 888877778999999887 4556666
No 36
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.62 E-value=4.3e-07 Score=86.48 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=101.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC--CCCeeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ--PLEIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~--~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
|+||.|+|| |++|+.++..++++.+.++..+-.+......+....+. .+ ..++.-.+.+.+++. +.|+||
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~VI 73 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLVI 73 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEEE
Confidence 789999997 99999999999888777776543221101111111000 00 011111335566775 579999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHhcCCCCCeEEE
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISASFHYKNVEIV 189 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l~~~~~DiEIi 189 (257)
..-.|......++.|++.|+++|- |+ ..++...++++.|+++|+.++...-|+-|+. ++.++++.+.+..-++.|.
T Consensus 74 n~~p~~~~~~i~ka~i~~gv~yvD-ts-~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy 151 (389)
T COG1748 74 NAAPPFVDLTILKACIKTGVDYVD-TS-YYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDIY 151 (389)
T ss_pred EeCCchhhHHHHHHHHHhCCCEEE-cc-cCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEEE
Confidence 999999999999999999999873 44 3333337799999999999999999999994 3677777765333455555
Q ss_pred ecc
Q 025154 190 ESR 192 (257)
Q Consensus 190 E~H 192 (257)
--+
T Consensus 152 ~g~ 154 (389)
T COG1748 152 VGG 154 (389)
T ss_pred Eec
Confidence 443
No 37
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=98.61 E-value=1e-06 Score=81.44 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=93.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.-||.|.|.+|+-|+.+.+...+ -+..+++.+.+..-+. + -.|+++|.+++++.+. ..+|.+|-+.
T Consensus 12 ~~~v~~~gi~~~~~~~~~~~~~~-ygt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~v 77 (300)
T PLN00125 12 NTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYV 77 (300)
T ss_pred CCeEEEecCCCHHHHHHHHHHHH-hCCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEec
Confidence 45999999999999999987654 5999999998742111 1 2488999999999851 1379999999
Q ss_pred ChHhHHHHHHHHHHcCCC-eEEeCCCCCHHH-HHHHHHHhhhcCceEEEccCchHHHH
Q 025154 115 DASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~-vViGTTG~s~e~-~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
.++.+.+.++.|.++|++ +||-|.||.+.. .+++.++|+++|+. ++.|| ++|+.
T Consensus 78 Pa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGPN-c~Gii 133 (300)
T PLN00125 78 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGPN-CPGII 133 (300)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECCC-Cceee
Confidence 999999999999999999 556677998653 35566778887764 56788 56763
No 38
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=98.57 E-value=1.3e-06 Score=80.23 Aligned_cols=119 Identities=16% Similarity=0.288 Sum_probs=93.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.-||.|.|.+|++|+.+.+.+... ++.+++.+.+.. +. .+ -.|++.|.+++++-+. .++|++|-+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v 71 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIFV 71 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence 458999999999999999988654 666888887642 11 11 2588999999998751 1289999999
Q ss_pred ChHhHHHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vV-iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
.++.+.+.++.|.+.|++.+ |=|.||.+...++|.+.|+++|+.++ .|| ++|+
T Consensus 72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~giril-GPN-c~Gi 125 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLI-GPN-CPGI 125 (286)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE-CCC-CceE
Confidence 99999999999999998665 66779987766789999999987654 677 4565
No 39
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.54 E-value=1e-06 Score=67.86 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
.+.||+|+|+ |++|++++.......++.+++++|.. ..|+. -.++++|++++++.+. .++|+.|
T Consensus 2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~---------i~gipV~~~~~~l~~~----~~i~iai 67 (96)
T PF02629_consen 2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKE---------IGGIPVYGSMDELEEF----IEIDIAI 67 (96)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSE---------ETTEEEESSHHHHHHH----CTTSEEE
T ss_pred CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcE---------ECCEEeeccHHHhhhh----hCCCEEE
Confidence 3579999996 99999998667778899999999943 33322 2489999999999874 2499999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEe
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViG 136 (257)
-+.+++.+.+.+..+++.|+..|+-
T Consensus 68 i~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 68 ITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp EES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred EEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999988754
No 40
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.54 E-value=2.1e-06 Score=79.12 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=92.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCC--ccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA--RAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~--~DVvID 112 (257)
+.||.|.|.+|++|+.+.+.+.+. +++.+..+.+.. +. .+ -.|++.|.+++++-+ . +|++|-
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~~------v~G~~~y~sv~dlp~------~~~~DlAvi 71 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFNTVAEAVE------ATGANASVI 71 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--Ce------EeCeeccCCHHHHhh------ccCCCEEEE
Confidence 469999999999999999998754 455565565531 11 11 247899999999985 4 899998
Q ss_pred cCChHhHHHHHHHHHHcCCCe-EEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~v-ViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+..++.+.+.++.|.++|++. ||=|.||..++.++|.++|+++|+.+ +.|| ++|+
T Consensus 72 ~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girv-lGPN-c~Gi 127 (291)
T PRK05678 72 YVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRL-IGPN-CPGI 127 (291)
T ss_pred EcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-ECCC-CCcc
Confidence 999999999999999999876 56677998765668999999988865 4788 4576
No 41
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.52 E-value=1.6e-06 Score=81.62 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=91.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCCC-CCCe--eeecCHHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV 97 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~g~~~g~~~-~~gv--~v~~dl~~~ 97 (257)
+++|+|+| .|.+|+.+++.+.++ -+++|+++.++.. .|-+...++.... .... ....+.++.
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 58999999 599999999998644 2578999988531 1222222221100 0000 012233333
Q ss_pred HhccccCCCccEEEEcCCh-----HhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p-----~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
+.. ..+.||+||.|.. +..+.+++.|+++|++||..-=+.-....++|.++|+++|+.++|-++..=|+-++
T Consensus 81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI 157 (346)
T PRK06813 81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL 157 (346)
T ss_pred hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchH
Confidence 321 0258999999854 56789999999999999965434444566889999999999999999888887665
Q ss_pred HHH
Q 025154 173 QQA 175 (257)
Q Consensus 173 ~~~ 175 (257)
.-+
T Consensus 158 ~~l 160 (346)
T PRK06813 158 DIG 160 (346)
T ss_pred HHH
Confidence 444
No 42
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.50 E-value=9.5e-07 Score=83.34 Aligned_cols=132 Identities=18% Similarity=0.154 Sum_probs=86.9
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecC---HHHHHhccccCCCccEE
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARAVV 110 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~DVv 110 (257)
|+|+|+ |.||+.+++.+.+....+-+.+.|++. ..+..+...-....+.. ..| +++++. +.|||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence 789998 999999999999888773334455431 11122221000112211 123 455664 68999
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH--HHHHHHHHhc
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISAS 180 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn--ll~~~a~~l~ 180 (257)
|+...|......++.|++.|++.|- |.+-.++..++.+.++++|+.++.+.-|.-|+. ++.++++.+.
T Consensus 72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~ 141 (386)
T PF03435_consen 72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD 141 (386)
T ss_dssp EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence 9999999999999999999999986 544345667899999999999999999999984 3566666665
No 43
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.42 E-value=3.9e-06 Score=67.03 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=76.3
Q ss_pred eEEEEcCC---ChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
+|+|+|++ ++.|..+.+.+.+ .++++..+ ++. + ++ -.|.++|.++++. . ..+|+++-|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~--~---~~------i~G~~~y~sl~e~-p-----~~iDlavv~ 62 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPK--G---GE------ILGIKCYPSLAEI-P-----EPIDLAVVC 62 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STT--C---SE------ETTEE-BSSGGGC-S-----ST-SEEEE-
T ss_pred EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCC--c---eE------ECcEEeeccccCC-C-----CCCCEEEEE
Confidence 69999987 8899999999887 77887754 332 1 12 2478899999983 3 489999999
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
+.|+...+.++.|.+.|+.-|+=.+| +..+++.++|+++|+.++ .|| ++|+.
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vi-gp~-C~gv~ 114 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVI-GPN-CLGVV 114 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEE-ESS--HHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEE-eCC-cceEE
Confidence 99999999999999999999988888 334578888999888755 455 66653
No 44
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.39 E-value=3.4e-06 Score=70.62 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=75.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
|+||+++| .|+||+.+++.+. ..++++. ++|+.. ....++. ..++...+++.++.+ .+|+||-+-
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~-~~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLA-KAGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHH-HTTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHH-hcCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence 78999999 5999999999987 4688876 577531 1223333 346888999999996 689988765
Q ss_pred C-hHhHHHHHHH--HH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154 115 D-ASTVYDNVKQ--AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (257)
Q Consensus 115 ~-p~~~~~~~~~--a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp 163 (257)
. ++++.+.+.. .+ ..|. +++-+|..++++.+++.+.+++.|+..+=+|
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 4 4555555543 33 3344 4556666778888899999888887777666
No 45
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.26 E-value=7e-06 Score=76.89 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=66.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc------CCC-CCCeeeecCHHHHHhccccCCCc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD------MEQ-PLEIPVMSDLTMVLGSISQSKAR 107 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g------~~~-~~gv~v~~dl~~~l~~~~~~~~~ 107 (257)
|||+|+|++|.||+.+++++.++++++|++++++. ..|++..++.. ... -....+.+...+.+ .++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS------KDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh------ccC
Confidence 58999999999999999999988999999998743 44655544321 100 01112211111223 379
Q ss_pred cEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154 108 AVVIDFTDASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 108 DVvIDFT~p~~~~~~~~~a~~~Gi~vVi 135 (257)
|+|+.++.+..+.++...+.+.|+.+|.
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 9999888888899999999999999875
No 46
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.24 E-value=7.4e-06 Score=76.97 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=69.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCC------C-CCCeeee-cCHHHHHhccccCC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDME------Q-PLEIPVM-SDLTMVLGSISQSK 105 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~~~g~~------~-~~gv~v~-~dl~~~l~~~~~~~ 105 (257)
|+||+|+|++|.+|+.+++.+..+|+++|+++ .+....|++...+.... . ...+.+. .+++. +.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~------ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VD------ 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hc------
Confidence 68999999999999999999999999999998 44335565554332110 0 0112332 24444 33
Q ss_pred CccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 106 ~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++|+|++++....+.+++..+.+.|+.+|.-+.
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~ 108 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS 108 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence 699999888888888898988899999886554
No 47
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.22 E-value=1e-05 Score=76.02 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCeeee-cCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVM-SDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g-~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+|+||||.+|+.+++.+.++|+++|++++++. ..|+.+.+... .....+..+. .+.+++++ ++|+++-
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE------DADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc------CCCEEEE
Confidence 68999999999999999999999999999887743 34555443221 0000011221 14555543 6999886
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
.+....+.+.+..+++.|++||-=++.|
T Consensus 75 alP~~~s~~~~~~~~~~G~~VIDlS~~f 102 (346)
T TIGR01850 75 ALPHGVSAELAPELLAAGVKVIDLSADF 102 (346)
T ss_pred CCCchHHHHHHHHHHhCCCEEEeCChhh
Confidence 6667788899999999998887544443
No 48
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=5.9e-06 Score=76.89 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=66.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeeecCH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVMSDL 94 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~-------------~~g~d~g~~------~g~~~~~gv~v~~dl 94 (257)
|+||+|+| +||+||.+++++.+++ ++|+||+-|.. -.|.-.+++ .-. ...+++++...
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER 78 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence 68999999 6999999999999988 79999998821 011111110 000 12356666555
Q ss_pred H-HHHhccccCCCccEEEEcCChHhHHHHHHHHHHcC--CCeEEeCCCC
Q 025154 95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHI 140 (257)
Q Consensus 95 ~-~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~G--i~vViGTTG~ 140 (257)
+ +.|.- ++...|+|||.|.--...++...-++.| +.|+++-++-
T Consensus 79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~ 125 (335)
T COG0057 79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK 125 (335)
T ss_pred ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCC
Confidence 5 44432 1235679999886655677777666665 6667766653
No 49
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.8e-05 Score=73.98 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCC-eeeecCH-----HHHH
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL 98 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~v~~dl-----~~~l 98 (257)
.++||+|+| .|.+|+.+++.+.+. -+++++++.+++.. ....+ +..+ -...++. .+++
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGS--LVRDL----DLLNAEVWTTDGALSLGDEVL 74 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccch--hcccc----cccchhhheecccccccHhhh
Confidence 368999999 599999999998764 36788999986411 00000 0111 1123333 3444
Q ss_pred hccccCCCccEEEEcCCh--HhH--HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154 99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (257)
Q Consensus 99 ~~~~~~~~~DVvIDFT~p--~~~--~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~ 174 (257)
.. ...||+|+.+.. +.. .++++.++++|+|||..==+.-.....+|.++|+++|+.++|=++-.=|+-++.-
T Consensus 75 ~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~ 150 (333)
T COG0460 75 LD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL 150 (333)
T ss_pred cc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHH
Confidence 32 578999997632 333 4999999999999984322455566889999999999999988877777755443
Q ss_pred HH
Q 025154 175 AA 176 (257)
Q Consensus 175 ~a 176 (257)
+-
T Consensus 151 lr 152 (333)
T COG0460 151 LR 152 (333)
T ss_pred HH
Confidence 33
No 50
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.12 E-value=6.6e-05 Score=66.21 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=75.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
++||+|+|+ |+||+.+++.+.... ..+-+.+++++. .+....+. .++++.+++|++++++ ++|+||-
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii 72 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL 72 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence 479999995 999999999887553 344233344321 11122222 2356777889988885 7999998
Q ss_pred cCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
.+.|..+.+.++.... .+..+|.-+-|++.+. |++.......-+..-||+..-+.
T Consensus 73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~~~~~v~r~~Pn~a~~v~ 129 (245)
T PRK07634 73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSY---LEERLPKGTPVAWIMPNTAAEIG 129 (245)
T ss_pred ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHH---HHHHcCCCCeEEEECCcHHHHHh
Confidence 9988888777765432 2444555555888765 44443321112234588776553
No 51
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.11 E-value=3.5e-05 Score=72.02 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=62.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|+||+|+||+|..|+.+++++.+ .|.++|+++......|+... +. ...+.+.+.....+. ++|+||.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~----g~~i~v~d~~~~~~~------~vDvVf~ 69 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FK----GKELKVEDLTTFDFS------GVDIALF 69 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eC----CceeEEeeCCHHHHc------CCCEEEE
Confidence 58999999999999999999987 58889998765544454432 11 122333322222332 7999997
Q ss_pred cCChHhHHHHHHHHHHcCCCeE
Q 025154 113 FTDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vV 134 (257)
.+....+.+.+..+++.|+.||
T Consensus 70 A~g~g~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 70 SAGGSVSKKYAPKAAAAGAVVI 91 (334)
T ss_pred CCChHHHHHHHHHHHhCCCEEE
Confidence 7766777888888889998555
No 52
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.09 E-value=4.7e-05 Score=79.08 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=91.8
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeecCHHHHHhc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~ 100 (257)
.+++|+|+| .|.+|+.+++.+.+.. +++++++.++. ..|-+...+..... ...-..+.+.+++.
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA--EAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh--hccCCCCHHHHHHH
Confidence 579999999 5999999999986543 57789988743 11223222211000 00001122332211
Q ss_pred cc-cCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCH---HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154 101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 101 ~~-~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~---e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a 176 (257)
+. .....||+||.|.-+....+...|+++|++||..--+.-. ++.++|.++|+++|+.+.|.++..=|+-++.-+-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~ 620 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ 620 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence 10 0014589999997666677778999999999965433322 5789999999999999999998888886654443
No 53
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.06 E-value=1.2e-05 Score=75.30 Aligned_cols=94 Identities=21% Similarity=0.180 Sum_probs=67.6
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC------------CCCCCeeeecCHHHHHhccccC
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM------------EQPLEIPVMSDLTMVLGSISQS 104 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~~~g~------------~~~~gv~v~~dl~~~l~~~~~~ 104 (257)
|||+| +|++|+.+++.+.+.++++||++.|.... ...+....+. ..+.++.+..++++++.
T Consensus 1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~----- 74 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE----- 74 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence 68999 59999999999988899999999984210 0011111110 01235677788999985
Q ss_pred CCccEEEEcCChHhHHHHHHHHHHcCCCeE-EeCC
Q 025154 105 KARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVP 138 (257)
Q Consensus 105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vV-iGTT 138 (257)
.+|+|++.|....+..+....++.|...| +|.+
T Consensus 75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 79999999987778888888888886655 5444
No 54
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.05 E-value=2e-05 Score=72.89 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=76.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCeeeecCHHHHHhccccC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQS 104 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~----------g~~~~~gv~v~~dl~~~l~~~~~~ 104 (257)
+|||+|+|+ |.||..++..+.. .++++. ++++.. .....+. +...+..+..+++++++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~-~G~~V~-~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~----- 73 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAAS-KGVPVR-LWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEALA----- 73 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHH-CCCeEE-EEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc-----
Confidence 579999995 9999999998874 467755 455421 1111111 1000111456778888774
Q ss_pred CCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHH--HHHHHHHhhh---cCceEEEccCchHHH
Q 025154 105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIGS 169 (257)
Q Consensus 105 ~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~--~~~L~~~a~~---~gipvl~spNfSlGv 169 (257)
.+|+||-+..+..+.+.+ ..++.+..+|.-++|++.++ .+.+.+...+ .++.++-.||+.-=+
T Consensus 74 -~aD~Vi~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~ 141 (328)
T PRK14618 74 -GADFAVVAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEI 141 (328)
T ss_pred -CCCEEEEECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHH
Confidence 789988776666554444 34456777777788886443 4455555443 567788899987653
No 55
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.03 E-value=8.8e-05 Score=67.46 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=75.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
++||+|+| .|.||+.+++.+.. .++++. ++|+.. .....+. ..++.+.++++++++ ++|+||...
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML 66 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence 57999999 59999999998874 678876 466531 1222222 245667788888885 799998776
Q ss_pred ChHhHHHHHH-------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154 115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 115 ~p~~~~~~~~-------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf 165 (257)
.+......+. ..+..|. +|+-++..++...+++.+.+++.|+.++-+|=|
T Consensus 67 p~~~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 67 PNSPHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred CCHHHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence 5444333331 2223344 444455556667778888887778888887744
No 56
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=98.03 E-value=2.4e-05 Score=70.01 Aligned_cols=152 Identities=15% Similarity=0.194 Sum_probs=110.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
..||.+-|.+||-|..+.+... +-+..+||.+.+.+.|. ..+|.||+.+..++.++ .++|.-+.|-
T Consensus 38 ~TkVi~QGfTGKqgTFHs~q~~-eYgTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyV 103 (329)
T KOG1255|consen 38 DTKVICQGFTGKQGTFHSQQAL-EYGTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYV 103 (329)
T ss_pred CceEEEecccCCccceeHHHHH-HhCCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEe
Confidence 4699999999999999998766 56899999998865443 25789999999999876 6899888899
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEe--c
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE--S 191 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE--~ 191 (257)
.|..+..-+..+++.-+|+++.-| |....+.-+++..-....-.=|+.||-- |+ ..+....|-|+- .
T Consensus 104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCP-GI---------I~p~qckIGImPg~I 173 (329)
T KOG1255|consen 104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCP-GI---------INPGQCKIGIMPGHI 173 (329)
T ss_pred CChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCC-Cc---------cCccceeeccccccc
Confidence 999999999999999999998866 8876665666666554445677788853 44 111122333332 2
Q ss_pred cCCCCCC--CCCccHHHHHHh
Q 025154 192 RPNARVR--YMTRTLISMQVC 210 (257)
Q Consensus 192 HH~~K~D--apSGTa~~l~~~ 210 (257)
|-+-|+- ++|||+..=+++
T Consensus 174 hk~G~IGIVSRSGTLTYEaVh 194 (329)
T KOG1255|consen 174 HKRGKIGIVSRSGTLTYEAVH 194 (329)
T ss_pred ccCCeeEEEecCCceeehhhh
Confidence 3333333 588887655443
No 57
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.01 E-value=5.6e-05 Score=67.64 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=66.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
||||+|+|+ |.||+.+++.+.+.. ...-+.++++.. +....+. ..+++.++++.+++++ .+|+||-.
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil~ 69 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVLA 69 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEEE
Confidence 789999995 999999999877542 123455666531 1122222 1236667788888774 78999988
Q ss_pred CChHhHHHHHHHHHHc-CCCeEEeCCCCCHHHHH
Q 025154 114 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS 146 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~-Gi~vViGTTG~s~e~~~ 146 (257)
+.|....+.++.+..+ +..||.-+.|.+.++++
T Consensus 70 v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~ 103 (267)
T PRK11880 70 VKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE 103 (267)
T ss_pred cCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence 8888888877766543 44555556688765544
No 58
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.99 E-value=4.4e-05 Score=63.69 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=30.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|||+|+|+ ||||+.+++.+.+.++++|+++.|.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence 68999996 9999999999988899999999984
No 59
>PLN02700 homoserine dehydrogenase family protein
Probab=97.98 E-value=7.7e-05 Score=71.02 Aligned_cols=136 Identities=17% Similarity=0.253 Sum_probs=85.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC--------CcEEEEEEecC-----C----CCcchhhhhc---C-CCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----S----VGEDIGMVCD---M-EQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~----~g~d~g~~~g---~-~~~~gv~v~-- 91 (257)
+++|+|+| .|.+|+.+++.+.+.. ++.++++.++. . .|-|...+.. . .....+.-+
T Consensus 3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 47999999 5999999999876543 36788888853 1 1333222211 0 000101000
Q ss_pred -----------------cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154 92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (257)
Q Consensus 92 -----------------~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~ 154 (257)
.+..+.+.+ ...+|+||.|.-....++.+.++++|++||..-=+......+++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~- 156 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA- 156 (377)
T ss_pred ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence 122232321 3469999999877778999999999999995433322233445666654
Q ss_pred cCceEEEccCchHHHHHHHHHH
Q 025154 155 ASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 155 ~gipvl~spNfSlGvnll~~~a 176 (257)
+|+.++|.+|..-|+-++.-+-
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~ 178 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLN 178 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHH
Confidence 5799999998888876654443
No 60
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.97 E-value=9.7e-05 Score=71.73 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=85.6
Q ss_pred CceEEEEcCC---ChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154 35 NIKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (257)
+-+|+|+|++ |++|..+.+.+.+ .++ ++. .+++.. .+ -.|+++|.+++++-+ .+|+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~-~gf~g~v~-~Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dl 67 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIE-GGYKGKIY-PVNPKA-----GE------ILGVKAYPSVLEIPD------PVDL 67 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHh-CCCCCcEE-EECCCC-----Cc------cCCccccCCHHHCCC------CCCE
Confidence 4479999987 8899999998874 444 443 344431 12 247889999999853 7999
Q ss_pred EEEcCChHhHHHHHHHHHHcCCCeE-EeCCCCCH------HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 110 VIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~~Gi~vV-iGTTG~s~------e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+|-|+.|+.+.+.++.|.+.|++.+ +=|.||.+ +..++|.++|+++|+.++ .|| ++|+
T Consensus 68 avi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl-GPn-c~G~ 132 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL-GPN-CLGI 132 (447)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE-ecC-eeeE
Confidence 9999999999999999999998765 55668864 224679999999888755 566 3554
No 61
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.94 E-value=0.00011 Score=65.85 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcE--EEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+++| +|+||+.+++.+... +.. .+.+.++.. ....++.. .. ++.++++.+++++ ++|+||-
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~-g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVil 67 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTS-PADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFL 67 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhC-CCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEE
Confidence 5899999 599999999988754 333 244555431 11222221 22 4667788888875 6899998
Q ss_pred cCChHhHHHHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 113 FTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 113 FT~p~~~~~~~~~a-~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
.+.|+...+.+... ...+..+|.-..|.+.++++.+ .+.....+...||...-
T Consensus 68 av~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~---~~~~~~~~r~~P~~~~a 121 (258)
T PRK06476 68 AVRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEW---IGHDVKLVRAIPLPFVA 121 (258)
T ss_pred EeCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHH---hCCCCCEEEECCCChhh
Confidence 88887777766543 2345556654557777655444 33322345556664443
No 62
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=97.93 E-value=2.6e-05 Score=65.27 Aligned_cols=33 Identities=39% Similarity=0.464 Sum_probs=31.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|||+|+| +||+||.+.+.+..+++++|+++-|.
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~ 33 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDP 33 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecc
Confidence 6999999 59999999999999999999999885
No 63
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.90 E-value=6.6e-05 Score=65.67 Aligned_cols=91 Identities=23% Similarity=0.335 Sum_probs=64.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVv 110 (257)
...||+|+|+ |.+|+.+++... ...+++++|++|... ...+... .++++ ++++++++.+ ..+|++
T Consensus 83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i-----~g~~v~~~~~l~~li~~----~~iD~V 150 (213)
T PRK05472 83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKI-----GGIPVYHIDELEEVVKE----NDIEIG 150 (213)
T ss_pred CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEe-----CCeEEcCHHHHHHHHHH----CCCCEE
Confidence 4579999995 999999998643 467899999999531 1111111 13333 4577777753 579999
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vViG 136 (257)
|..+.+....+....++++|+..|.-
T Consensus 151 iIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 151 ILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred EEeCCchhHHHHHHHHHHcCCCEEee
Confidence 98887788888899999999766543
No 64
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.89 E-value=4.1e-05 Score=71.84 Aligned_cols=97 Identities=23% Similarity=0.134 Sum_probs=65.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCCC-----CCCeeee--cC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDMEQ-----PLEIPVM--SD 93 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g~~~-----~~gv~v~--~d 93 (257)
++||+|+|+ |||||.+.+.+.++++++|+++.|+.. .|+--+.+...+. ...+.++ .+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 489999997 999999999998889999999998310 1111111100000 0123333 25
Q ss_pred HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
++++-= .++|+||+.|-.....+.+...++.|...|+=+
T Consensus 81 ~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iS 119 (334)
T PRK08955 81 IADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVT 119 (334)
T ss_pred hhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEEC
Confidence 555432 379999999988888999999999997666533
No 65
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.88 E-value=9.8e-05 Score=58.58 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=58.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCeeeecCHH-HHHhccccCCCccEEEEcC
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~~~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVvIDFT 114 (257)
||+|+|++|++|+.+++.+...++++++++++++ ..++.+....+ ...-.++.+++ +.++. .++|+|+..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE----LAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh----cCCCEEEEcC
Confidence 6899998899999999999988999999997743 33444433211 11101111221 11111 3789998777
Q ss_pred ChHhHHHHH---HHHHHcCCCeEE
Q 025154 115 DASTVYDNV---KQATAFGMRSVV 135 (257)
Q Consensus 115 ~p~~~~~~~---~~a~~~Gi~vVi 135 (257)
.++.+.+.+ ..+++.|+.+|=
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD 97 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVID 97 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEE
Confidence 777777753 444578887663
No 66
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.87 E-value=9.6e-05 Score=67.59 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=69.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCeeeecCHHHHHhccccC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS 104 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~----------~~~~gv~v~~dl~~~l~~~~~~ 104 (257)
||||+|+|+ |.||..++..+.. .+.++ .++++.. .....+... ..+.++...++++++++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~-~g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLAR-NGHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA----- 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-CCCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence 689999995 9999999998874 56775 4566421 111111100 00124556778887774
Q ss_pred CCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhh-----cCceEEEccCch
Q 025154 105 KARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS 166 (257)
Q Consensus 105 ~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~-----~gipvl~spNfS 166 (257)
++|++|-++.+....+.+..... .+..+|.-+.|++.+..+.+.+..++ ....++..||+.
T Consensus 71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~ 139 (325)
T PRK00094 71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA 139 (325)
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence 78999977766555555444333 34444444436665433223222222 135677888864
No 67
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.87 E-value=9.8e-05 Score=70.46 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHH-HhccccCCCccEEE
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI 111 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVvI 111 (257)
..++||+|+||+|..|+.+++++.++|+++|+.+......|+.+......-.........+++.. ++ +.|+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf 109 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF 109 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE
Confidence 35679999999999999999999999999999887644445443221100000111212222322 32 689888
Q ss_pred EcCChH-hHHHHHHHHHHcCCCeEEeCC
Q 025154 112 DFTDAS-TVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 112 DFT~p~-~~~~~~~~a~~~Gi~vViGTT 138 (257)
|..|. ...+.+.. ++.|+.||-=++
T Consensus 110 -~Alp~~~s~~i~~~-~~~g~~VIDlSs 135 (381)
T PLN02968 110 -CCLPHGTTQEIIKA-LPKDLKIVDLSA 135 (381)
T ss_pred -EcCCHHHHHHHHHH-HhCCCEEEEcCc
Confidence 55555 55566665 578876664443
No 68
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.85 E-value=0.00013 Score=55.19 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=58.4
Q ss_pred eEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF 113 (257)
||+++| +|+||+++++.+.+.. ..++.-+.++. .+.+.++. ..+++.++. +..++++ .+|++|-.
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila 68 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---KEYGVQATADDNEEAAQ------EADVVILA 68 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence 799999 5999999999987542 26666555543 12233333 245565555 7888885 69999988
Q ss_pred CChHhHHHHHHHH--HHcCCCeEE
Q 025154 114 TDASTVYDNVKQA--TAFGMRSVV 135 (257)
Q Consensus 114 T~p~~~~~~~~~a--~~~Gi~vVi 135 (257)
..|....+.+... ...++-+|.
T Consensus 69 v~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 69 VKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ECHHHHHHHHHHHhhccCCCEEEE
Confidence 8888888877665 556666654
No 69
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.84 E-value=0.00023 Score=67.62 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=74.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeec--CHHHHHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV 109 (257)
|+||+|+||||-.|+.+++.+.+++++. ++. +.+...|...-.+.+ ....+.+ +.++ +. ++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence 6899999999999999999788899998 777 443322333222222 1223333 3333 33 6898
Q ss_pred EEEcC-ChHhHHHHHHHHHHcCCC-eEEeC--------------CCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 110 VIDFT-DASTVYDNVKQATAFGMR-SVVYV--------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 110 vIDFT-~p~~~~~~~~~a~~~Gi~-vViGT--------------TG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
++ |+ ..+.+.+.+..+.+.|++ +||=- +.++.++ |+. ..+.|+.++-.||=+.-.
T Consensus 69 vf-~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~---i~~-~~~~g~~iIanPnC~tt~ 139 (369)
T PRK06598 69 II-TCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDV---IDD-ALANGVKTFVGGNCTVSL 139 (369)
T ss_pred EE-ECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHH---HHh-hhhcCCCEEEcCChHHHH
Confidence 77 55 455667788888899975 44433 3456554 333 323455678889866544
No 70
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.84 E-value=0.00014 Score=68.27 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCceEEEEcCCChHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVV 110 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVv 110 (257)
.|+||+|+||||-.|+.+++++. ..|..+|+.+.+....|+.+. +.+ ....+.+ +.++ ++ ++|++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~~~~~~~~-~~------~vD~v 70 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRVREVDSFD-FS------QVQLA 70 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEEeeCChHH-hc------CCCEE
Confidence 46899999999999999999998 568999888876555555433 111 1222221 2222 33 69998
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeE------------EeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSV------------VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vV------------iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
+-++.+..+.+.+..+.++|+.+| .+-+.++.++++.+ ++ ..++=.||=+.-..
T Consensus 71 Fla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~----~~--~~iIAnPgC~~t~~ 136 (336)
T PRK05671 71 FFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASL----AA--PFLVSSPSASAVAL 136 (336)
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccc----cC--CCEEECCCcHHHHH
Confidence 866667778889999999999877 34455565543332 12 35888888665443
No 71
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.84 E-value=0.00028 Score=64.73 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=70.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||+++| .|+||+.+++.+.+ .+++|+ ++|+.. .....+. ..|+..+++++++.++. ..+|+||-+..
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP 68 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence 4899999 59999999998875 578877 577541 1122222 34667788999887520 12689887776
Q ss_pred hH-hHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 116 AS-TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 116 p~-~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
++ .+.+.+.... +.| .+||-++.-+++...++.+.+++.|+..+
T Consensus 69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 55 4444443332 233 46666655555555666666666666544
No 72
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.83 E-value=0.00038 Score=65.54 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=62.1
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
..++||+|+||+|..|+.+++.+.+ +|..+|..+......|+.... .+ ..+.+.+-..+.++ ++|++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~v~~~~~~~~~------~~D~v 73 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYTVEELTEDSFD------GVDIA 73 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeEEEeCCHHHHc------CCCEE
Confidence 4568999999999999999999987 788899887665444554432 11 12333221123343 69998
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeE
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vV 134 (257)
+-+.....+.+++..+.+.|+.||
T Consensus 74 f~a~p~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 74 LFSAGGSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred EECCCcHHHHHHHHHHHhCCCEEE
Confidence 844445566788888888898766
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.83 E-value=0.00041 Score=62.89 Aligned_cols=118 Identities=9% Similarity=0.108 Sum_probs=74.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+++| +|.||+.+++.+.+.. ..++. ++++.. .+....+. ..+++.++++..++.+ ++|+||-
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil 71 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL 71 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence 6999999 5999999999987653 13443 455421 11122222 1346777788888774 6899998
Q ss_pred cCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc-cCchHHH
Q 025154 113 FTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS 169 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s-pNfSlGv 169 (257)
...|....+.+..... .+.-+|.-..|.+.+++++ +.. .+.||+.+ ||+..-+
T Consensus 72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mPn~~~~~ 128 (279)
T PRK07679 72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMPNTSAAI 128 (279)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECCCHHHHH
Confidence 8888887776655443 3443444357888766554 332 23577755 6666444
No 74
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.83 E-value=0.00021 Score=74.18 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=89.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcC---------CcEEEEEEecCC-----CCcchhhhhcCCCCCCeeeecCHHHHHh
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLG 99 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~-----~g~d~g~~~g~~~~~gv~v~~dl~~~l~ 99 (257)
.+++|+|+| .|.+|+.+++.+.++. +++++++.++.. .|-+...+..... ......+++.+++
T Consensus 457 ~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e 533 (810)
T PRK09466 457 KRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL 533 (810)
T ss_pred ceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence 468999999 5999999999986542 477899998531 1223222221000 0001122332222
Q ss_pred ccc-cCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCC---CHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154 100 SIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (257)
Q Consensus 100 ~~~-~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~---s~e~~~~L~~~a~~~gipvl~spNfSlGvnl 171 (257)
.+. .+...+|+||.|..+....+...|+++|++||..-=.. ..+..++|.++|+++|+.+.|-++..-|+-+
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPi 609 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPI 609 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccCh
Confidence 110 00123599999977767777889999999999654332 2467889999999999999999988888766
No 75
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.81 E-value=0.00039 Score=63.75 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=73.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||+++| .|.||+.+++.+.+ .+++|+ ++|+.. .....+. ..|+.++++++++.+.. ..+|+||-+..
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLR-GGHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP 68 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHH-CCCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence 4899999 59999999998874 578765 467531 1122222 34677788998887520 13688886654
Q ss_pred hH-hHHHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 116 AS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 116 p~-~~~~~~~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
+. .+.+.+. ..++.|.-+|..+|+. ++...++.+.+++.|+..+=+|.+.
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~g~~~~dapvsG 122 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEKGIHFVDVGTSG 122 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHcCCEEEeCCCCc
Confidence 43 3333333 3334454344444544 4455667777777788877666654
No 76
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.80 E-value=0.00028 Score=66.02 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=90.2
Q ss_pred ceEEEEcCCChHHHHHHHHHH--hc--------------------CCcEEEEEEe--cCCCCcchhhhhcCC--------
Q 025154 36 IKVIINGAVKEIGRAAVIAVT--KA--------------------RGMEVAGAID--SHSVGEDIGMVCDME-------- 83 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~--~~--------------------~~~eLvg~vd--~~~~g~d~g~~~g~~-------- 83 (257)
+||+|+|. |.-.+.+++-+. .+ .++|+|+++| ..+.|+|+.+..-..
T Consensus 1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~ 79 (351)
T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA 79 (351)
T ss_pred CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence 69999995 999999998653 11 1679999998 357898887654221
Q ss_pred --CCCCeeee-----c------------------CHHHHHhccccCCCccEEEEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154 84 --QPLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFT---DASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 84 --~~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~vVi 135 (257)
.+.|+.|. + |+-+.+.+ .++||+|.+= +-+++.-++.+|++.|++.|-
T Consensus 80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~----~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN 155 (351)
T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKD----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN 155 (351)
T ss_pred ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHh----cCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence 01233331 1 23333433 6899999984 456777888999999999999
Q ss_pred eCCCCCHHHHHHHHHHhhhcCceEEEccCc-h-HHHHHHHH
Q 025154 136 YVPHIQLETVSALSAFCDKASMGCLIAPTL-S-IGSILLQQ 174 (257)
Q Consensus 136 GTTG~s~e~~~~L~~~a~~~gipvl~spNf-S-lGvnll~~ 174 (257)
+|+-+... ..++.+.++++|+|++ .--| | +|..++..
T Consensus 156 ~~P~~ia~-~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~ 194 (351)
T TIGR03450 156 ALPVFIAS-DPEWAKKFTDAGVPIV-GDDIKSQVGATITHR 194 (351)
T ss_pred ccCccccC-CHHHHHHHHHCCCCEe-cccccccCCCchHHH
Confidence 99976553 3467777888899876 2222 3 67765433
No 77
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.79 E-value=0.00022 Score=64.79 Aligned_cols=119 Identities=10% Similarity=0.062 Sum_probs=75.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
|+||+|+|+ |.||+.+++.+.+... .+++.. +++. ......+.. .. ++.++.+.++++. ++|+|
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~-~r~~-~~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV 68 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILY-SSSK-NEHFNQLYD---KYPTVELADNEAEIFT------KCDHS 68 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEE-eCCc-HHHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence 679999995 9999999998876531 455543 3321 011111211 12 3455678777774 78999
Q ss_pred EEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHH
Q 025154 111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI 170 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvn 170 (257)
|-...|..+.+.+..+ +..++.+|+-.-|++.+++++ .... .+|+ .=||...-+.
T Consensus 69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~--~~vvR~MPN~~~~~g 127 (277)
T PRK06928 69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG--LQVSRLIPSLTSAVG 127 (277)
T ss_pred EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC--CCEEEEeCccHHHHh
Confidence 9888888888777655 345777787777998766544 3322 2343 4488776664
No 78
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.76 E-value=0.00024 Score=63.54 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=71.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
|||+++| +|.||+.+++.+.+. ++ +++...++.. .....+. ..|+.+.++..++.+ ++|+||
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi 66 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII 66 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence 6899999 599999999988754 44 5553325431 1122222 357777888888874 789999
Q ss_pred EcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchH
Q 025154 112 DFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSI 167 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSl 167 (257)
-...|+...+.+..... .+.-+|.-+.|.+.++.+ ++... .+++ ..||...
T Consensus 67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~~ 121 (266)
T PLN02688 67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTPC 121 (266)
T ss_pred EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcHH
Confidence 88888877777654432 344445444677765544 33332 2566 5777644
No 79
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.75 E-value=0.00011 Score=69.15 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=63.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hcC--C-CCCCeeee-
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CDM--E-QPLEIPVM- 91 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g-~~---~g~--~-~~~gv~v~- 91 (257)
.++||||+|+ ||||+.+++.+.+.++++|+++.|+.. .|+--+ ++ .|. . ....+.++
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 3689999995 999999999988889999999998420 111110 11 000 0 00112222
Q ss_pred -cCHHHH-HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154 92 -SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 92 -~dl~~~-l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi 135 (257)
+|++++ ..+ .++|+||+.|-.....+.+...++.|...|+
T Consensus 83 ~~~p~~~~w~~----~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi 124 (338)
T PLN02358 83 IRNPEDIPWGE----AGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124 (338)
T ss_pred cCCcccCcccc----cCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence 233333 111 3789999989888889999999999975554
No 80
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.74 E-value=0.00065 Score=62.73 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=72.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh----------hhcCCCCCCeeeecCHHHHHhccccCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM----------VCDMEQPLEIPVMSDLTMVLGSISQSK 105 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~----------~~g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (257)
|||+|+|+ |.||..++..+.+ .+.++. .+++.. ..+.. +.+...+.++.+++++++.+. .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~-~g~~V~-l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSS-KKISVN-LWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----D 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHH-CCCeEE-EEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----C
Confidence 58999996 9999999998764 466664 555421 10100 111111234567788888763 3
Q ss_pred CccEEEEcCChHhHHHHHHHHHH----cCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchH
Q 025154 106 ARAVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 106 ~~DVvIDFT~p~~~~~~~~~a~~----~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSl 167 (257)
.+|++|-++.+..+.+.++.... .+.++|+-+-|+..+. .+.|.+......+.++-.|+|..
T Consensus 71 ~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~ 140 (326)
T PRK14620 71 NATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAK 140 (326)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHH
Confidence 78999988877766666665443 3556788777884421 12344443332233445788754
No 81
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.74 E-value=0.0008 Score=63.94 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcC------CcEEE-EEEecCCCCcch-----------hhhhcCCCCCCeeeecCH
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKAR------GMEVA-GAIDSHSVGEDI-----------GMVCDMEQPLEIPVMSDL 94 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLv-g~vd~~~~g~d~-----------g~~~g~~~~~gv~v~~dl 94 (257)
..++||+|+|+ |.||.+++..+.... +.++. +..+....+++. ..+-+..-+.++.+++|+
T Consensus 9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 34689999995 999999999887553 13332 333321011111 111122123356678899
Q ss_pred HHHHhccccCCCccEEEEcCChHhHHHHHHHHHH-----cCCCeEEeCCCCCHHHH------HHHHHHhhhcCceEEEcc
Q 025154 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV------SALSAFCDKASMGCLIAP 163 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~-----~Gi~vViGTTG~s~e~~------~~L~~~a~~~gipvl~sp 163 (257)
+++++ ++|+||-...|....+.+..... .+..+|+.+-|++.++. +.+++.-. ..+.++..|
T Consensus 88 ~eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGP 160 (365)
T PTZ00345 88 KEAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGA 160 (365)
T ss_pred HHHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECC
Confidence 98885 78988867777776666665543 24457777778864432 22333322 247779999
Q ss_pred CchHHHH
Q 025154 164 TLSIGSI 170 (257)
Q Consensus 164 NfSlGvn 170 (257)
||+-=|.
T Consensus 161 s~A~Eva 167 (365)
T PTZ00345 161 NVANDVA 167 (365)
T ss_pred CHHHHHH
Confidence 9999985
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.73 E-value=0.0002 Score=59.61 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=71.8
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh----------hcCCCCCCeeeecCHHHHHhccccCCC
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV----------CDMEQPLEIPVMSDLTMVLGSISQSKA 106 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~----------~g~~~~~gv~v~~dl~~~l~~~~~~~~ 106 (257)
||+|+|+ |.||.+++..+.. .+.++. .+.++. +.+..+ .+..-+..+.+++|++++++ +
T Consensus 1 KI~ViGa-G~~G~AlA~~la~-~g~~V~-l~~~~~--~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ 69 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLAD-NGHEVT-LWGRDE--EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------D 69 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHH-CTEEEE-EETSCH--HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCEEE-EEeccH--HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------c
Confidence 7999996 9999999987765 455443 343320 111111 11111235678999999995 7
Q ss_pred ccEEEEcCChHhHHHHHH---HHHHcCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchHHH
Q 025154 107 RAVVIDFTDASTVYDNVK---QATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 107 ~DVvIDFT~p~~~~~~~~---~a~~~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+|++|-.++...+.+.++ .+++.+.++|+-+-||.... .+.+++......+.++-.|||+--+
T Consensus 70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei 139 (157)
T PF01210_consen 70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI 139 (157)
T ss_dssp -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred ccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence 999886665555544444 44568888888776872211 2346666655558899999998655
No 83
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.72 E-value=0.00022 Score=66.39 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
+|+||+|+||+|-.|+.+++++.++|.++|+....+. +.+. .+.++.++ ++|+++-+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~~~---------------~~~~~~~~------~~DvvFla 57 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RKDA---------------AARRELLN------AADVAILC 57 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CCcc---------------cCchhhhc------CCCEEEEC
Confidence 4789999999999999999999999999999887543 1111 12233442 68988855
Q ss_pred CChHhHHHHHHHHHHcCCCeE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 114 TDASTVYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vV-------------iGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
.......+.+..+.+.|+.|| .|-+.++.++.+.|+ . ..++=.||=..
T Consensus 58 lp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~--~~~IanPgC~~ 118 (313)
T PRK11863 58 LPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----A--AKRVANPGCYP 118 (313)
T ss_pred CCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----c--CCeEEcCCcHH
Confidence 666777888888888888655 334445555555553 2 24566666443
No 84
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.71 E-value=0.00023 Score=66.84 Aligned_cols=118 Identities=13% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCceEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
..+||+|+||||-.|+.+++++.+ .|..+|..+......|+... +.+ ..+.+. ++++..- .++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvvf 71 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLAF 71 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEEE
Confidence 458999999999999999999988 79999998866555566554 211 144444 4444321 2689888
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEE-------------eCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVV-------------YVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vVi-------------GTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
-++....+.+.+..+.+.|+.||= +-+.++.+.++.+ ++ ..++=.||=+.-
T Consensus 72 ~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i----~~--~~iIAnPgC~~t 135 (336)
T PRK08040 72 FVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY----RN--RNIIAVADSLTS 135 (336)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhh----cc--CCEEECCCHHHH
Confidence 445666667888988899997662 2344555544444 22 347777775443
No 85
>PRK07680 late competence protein ComER; Validated
Probab=97.69 E-value=0.0006 Score=61.54 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=70.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+|+|+ |.||+.+++.+.+...+ +-+.++++.. .....+.. .. ++.++.+.++++. ++|+||-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil 68 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI 68 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence 58999995 99999999988755322 3355666531 11222221 22 6777788888774 7899998
Q ss_pred cCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 113 FT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
...|....+.+.... ..+.-+|.-+.|.+.++ |++.... -.+-+-||+.-+
T Consensus 69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~---L~~~~~~--~~~r~~p~~~~~ 122 (273)
T PRK07680 69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQ---LETLVPC--QVARIIPSITNR 122 (273)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH---HHHHcCC--CEEEECCChHHH
Confidence 888887777666543 23444444444676544 4444333 233344666543
No 86
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.66 E-value=0.00074 Score=61.38 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=70.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p 116 (257)
||+|+| +|.||+.+++.+.. .++++. ++|+.. .....+. ..|....++++++++ ++|+||.....
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~-~G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAK-AGYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD 65 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence 699999 59999999998874 578876 566531 2222222 235556678888875 79998866543
Q ss_pred Hh-HHHHH---HHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154 117 ST-VYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (257)
Q Consensus 117 ~~-~~~~~---~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp 163 (257)
.. +...+ ..++ ..|. +|+-++..++...+++.+..++.|+.++-+|
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 32 22232 1122 2333 4555555566666778888887788888766
No 87
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00026 Score=66.49 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeee-cCHHHHHhccccCCCccEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVM-SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~-~~gv~v~-~dl~~~l~~~~~~~~~DVvI 111 (257)
.|+||+|+|++|-.|-.+++++..+|++|+..+..+...|+.+.++...-. -...+.. -|.+++.. .++|||+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF 75 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence 489999999999999999999999999996655544446776665432100 0111221 23444422 3689999
Q ss_pred EcCChHhHHHHHHHHHHcCCCeE
Q 025154 112 DFTDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vV 134 (257)
-.+....+.+.+...++.|+.||
T Consensus 76 lalPhg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 76 LALPHGVSAELVPELLEAGCKVI 98 (349)
T ss_pred EecCchhHHHHHHHHHhCCCeEE
Confidence 88888899999999999999855
No 88
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.63 E-value=0.00086 Score=61.52 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=66.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||+++| .|+||..+++.+.+ .++++.. +|+.. .....+. ..++....+++++.+.+ ..+|+||-...
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp 68 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP 68 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence 5899999 59999999998874 5788764 77531 1122222 22444456776655321 25899887766
Q ss_pred hHhHHHHHHH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154 116 ASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (257)
Q Consensus 116 p~~~~~~~~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp 163 (257)
+..+.+.+.. .++.|.-+|-.+|+...+ ..++.+.+++.|+..+=+|
T Consensus 69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~-t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYKD-SLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCCccc-HHHHHHHHHhcCCeEEecC
Confidence 5544444433 345565555555554333 3344444455566655433
No 89
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.60 E-value=0.00057 Score=64.18 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred eEEEEcCCChHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvIDF 113 (257)
||+|+||+|..|+.+++++.+ .|..+|+.+......|+... +.+ ..+.+.+ +. +.+. ++|+++..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~~~~~~~-~~~~------~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELEVNEAKI-ESFE------GIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEEEEeCCh-HHhc------CCCEEEEC
Confidence 699999999999999999887 57777776554444454432 111 1222222 22 2333 79999977
Q ss_pred CChHhHHHHHHHHHHcCCCeE
Q 025154 114 TDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vV 134 (257)
+....+.+.+..+++.|+.||
T Consensus 69 ~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 69 AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 777888899999999998655
No 90
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.59 E-value=0.0008 Score=60.53 Aligned_cols=109 Identities=7% Similarity=0.054 Sum_probs=68.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+++|+ |.||..+++.+.+.... ++. +++++. ...++....+..++++ ++|+||-
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~------------~~~~~~~~~~~~~~~~------~~D~Vil 63 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIY-YHTPSK------------KNTPFVYLQSNEELAK------TCDIIVL 63 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEE-EECCCh------------hcCCeEEeCChHHHHH------hCCEEEE
Confidence 69999995 99999999998865322 233 334321 0123334556667764 6899998
Q ss_pred cCChHhHHHHHHHHHH--cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~--~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
+..|....+.+..... .+..+|+-..|.+.++.+.+... .. ..+-+-||...
T Consensus 64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~-~~--~vvr~mPn~p~ 117 (260)
T PTZ00431 64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGV-EA--KIVRVMPNTPS 117 (260)
T ss_pred EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCC-CC--eEEEECCCchh
Confidence 9888888877766543 24567777779987665554321 11 12345666654
No 91
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.58 E-value=0.0014 Score=60.22 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=75.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||+++| .|+||+.+++.+.+ .++++. ++++.. ....+. ..|+...++..++.+ .+|+||-...
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~-~G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLAR-AGHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP 64 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHH-CCCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence 4899999 59999999998874 567765 555431 122232 245666778888774 7898886543
Q ss_pred h-HhHHHHHHH---H---HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 116 A-STVYDNVKQ---A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 116 p-~~~~~~~~~---a---~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
. +.+.+.+.. . +..| .+|+-++..++++.+++.+.+++.|+..+=+| +|=|..
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP-VsGg~~ 124 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP-VSGGEI 124 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec-CCCCHH
Confidence 3 333443311 1 1223 36666777778888888888888888877666 444443
No 92
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.56 E-value=0.00018 Score=67.73 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=74.8
Q ss_pred eEEEEcCCChHHHHHHHHHHhcC-------CcEEE-EEEecCCCCcc-----------hhhhhcCCCCCCeeeecCHHHH
Q 025154 37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVA-GAIDSHSVGED-----------IGMVCDMEQPLEIPVMSDLTMV 97 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLv-g~vd~~~~g~d-----------~g~~~g~~~~~gv~v~~dl~~~ 97 (257)
||+|+|+ |.+|.+++..+.... +.++. +..+....+.. ...+.+..-+.++.+++|++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6999995 999999999887532 03332 22210000111 1111122112346678999999
Q ss_pred HhccccCCCccEEEEcCChHhHHHHHHH---HHHcCCCeEEeCCCCCHH--HHHH----HHHHhhhcCceEEEccCchHH
Q 025154 98 LGSISQSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLE--TVSA----LSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~---a~~~Gi~vViGTTG~s~e--~~~~----L~~~a~~~gipvl~spNfSlG 168 (257)
++ ++|++|-..++....+.+.. .++.+.++|+.|=|+..+ .... +++.- ...+.++..|||+.-
T Consensus 80 l~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~E 152 (342)
T TIGR03376 80 AK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANE 152 (342)
T ss_pred Hh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHH
Confidence 85 78988855555555444444 345577888877798765 3222 33322 234777999999988
Q ss_pred HH
Q 025154 169 SI 170 (257)
Q Consensus 169 vn 170 (257)
|.
T Consensus 153 va 154 (342)
T TIGR03376 153 VA 154 (342)
T ss_pred HH
Confidence 85
No 93
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.53 E-value=0.0014 Score=60.06 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=74.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
|.||+++| .|.||..+++.+.+ .++++. ++|+.. .....+. ..++....++.++++ .+|+||-..
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~-~G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLK-QGHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML 65 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence 45899999 59999999998874 467764 566531 1222332 235556778888774 789988766
Q ss_pred ChHhHHHHHHH-------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 115 DASTVYDNVKQ-------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 115 ~p~~~~~~~~~-------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
.++...+.+.. ++..|. +|+-++..+++..+++.+..++.|+..+=+|-+.
T Consensus 66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 55543332211 123343 4445555567777888888888788877666654
No 94
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.52 E-value=0.00034 Score=60.68 Aligned_cols=92 Identities=24% Similarity=0.363 Sum_probs=68.5
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecC--CCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCC
Q 025154 32 PQSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA 106 (257)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~--~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~ 106 (257)
.+.|.+|+|+|+ |.+|++++..-- .+.++++++++|.. ..|..+ .+++|+ ++++..+.+ .+
T Consensus 81 ~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---------~~v~V~~~d~le~~v~~----~d 146 (211)
T COG2344 81 QDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---------GDVPVYDLDDLEKFVKK----ND 146 (211)
T ss_pred CCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---------CCeeeechHHHHHHHHh----cC
Confidence 356889999996 999999998753 47899999999953 333322 346665 578887764 57
Q ss_pred ccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 107 ~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
+|+.|-..+.+.+-+.+....++|+.-+.--
T Consensus 147 v~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNF 177 (211)
T COG2344 147 VEIAILTVPAEHAQEVADRLVKAGVKGILNF 177 (211)
T ss_pred ccEEEEEccHHHHHHHHHHHHHcCCceEEec
Confidence 8888866666666778889999998766543
No 95
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.48 E-value=0.0018 Score=60.66 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=80.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecC-----CCC-cchhhhhcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSH-----SVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~-----~~g-~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (257)
|+||+|+|+ |..|.++++.+.+. +.+ ..++.+.. ... +....+-+..-+.++..++|++++++ .+
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~n-g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARN-GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------GA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhc-CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------cC
Confidence 579999996 99999999988755 333 33444311 000 11111112223456777999999995 69
Q ss_pred cEEEEcCChHhH-HHHHH---HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh----cCceEEEccCchHHHH
Q 025154 108 AVVIDFTDASTV-YDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI 170 (257)
Q Consensus 108 DVvIDFT~p~~~-~~~~~---~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~----~gipvl~spNfSlGvn 170 (257)
|+++ |..|... .+.++ ..+..+.++|+.|=|+..+..+.+.+..++ ..+.++-.|||+-=|.
T Consensus 73 d~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa 142 (329)
T COG0240 73 DIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA 142 (329)
T ss_pred CEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence 9888 5444443 34443 345788999998888876554444444432 2378889999998875
No 96
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00063 Score=61.28 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=60.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------CCC----cchhhhhc-CCCCCCe----ee-------e
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------SVG----EDIGMVCD-MEQPLEI----PV-------M 91 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------~~g----~d~g~~~g-~~~~~gv----~v-------~ 91 (257)
|+|+++| .||||..+++.+. +.+.++|+ +|.+ ..| ....++.. +..+.-| |. .
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi 77 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI 77 (300)
T ss_pred Ccceeec-cchhhHHHHHHHH-hCCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence 6899999 7999999999887 57888886 5521 001 01112211 0001111 11 1
Q ss_pred cCHHHHHhccccCCCccEEEEc--CChHhHHHHHHHHHHcCCCeE-EeCCC
Q 025154 92 SDLTMVLGSISQSKARAVVIDF--TDASTVYDNVKQATAFGMRSV-VYVPH 139 (257)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDF--T~p~~~~~~~~~a~~~Gi~vV-iGTTG 139 (257)
+++...+ ..-|+|||- |+-.......+.+.++|++.+ +||+|
T Consensus 78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 2333333 357999997 566777788888999999999 88875
No 97
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.47 E-value=0.0009 Score=63.93 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=62.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCC---cc----------------hhhhhcCCCCCCeeee---
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---ED----------------IGMVCDMEQPLEIPVM--- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g---~d----------------~g~~~g~~~~~gv~v~--- 91 (257)
|.||+|.|+||.+|+..++.+.+.| .+++++........ +- ..++...-...++.++
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 5699999999999999999888765 69999987311100 00 0000000000122232
Q ss_pred cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEE
Q 025154 92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 92 ~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vVi 135 (257)
+.+.++++ ..++|+|+-...-.+.......|+++|++|.+
T Consensus 81 ~~~~~l~~----~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 81 EGLCELAA----LPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL 120 (385)
T ss_pred hHHHHHhc----CCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence 23444444 25689999887766667778899999999988
No 98
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.45 E-value=0.0034 Score=58.76 Aligned_cols=129 Identities=11% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhh-cCCCCCCeeeecCHHHHHhccccCC
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK 105 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~g~~~-g~~~~~gv~v~~dl~~~l~~~~~~~ 105 (257)
..||||+|+|+ |.||..++..+.+.. .......++.. .+.....+- +...+..+.+++|++++++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~------ 76 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN------ 76 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh------
Confidence 45789999995 999999999887553 32222222110 010000000 1100123556788888774
Q ss_pred CccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHH----HHHHHHHhhhcCceEEEccCchHHH
Q 025154 106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 106 ~~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~----~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
.+|+||-++.+..+.+.++.. +..+.++|+-+-|+..+. .+.|++......+.++..|||.-=+
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV 147 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 789988777666655555444 344556776666886421 1234443222235678899998854
No 99
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.0024 Score=59.88 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=80.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|+||||+||||-.|+.+++.+.+ ++.++.+.++.+ +..|+...++.+- . +.+-++..+..+. .++|+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~~----~~~Divf- 71 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFVF----SDVDIVF- 71 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCcccccccccc----ccCCEEE-
Confidence 58999999999999999999988 788887766664 3556664444321 1 2333322222221 3688766
Q ss_pred cCCh-HhHHHHHHHHHHcCCCeEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 113 FTDA-STVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 113 FT~p-~~~~~~~~~a~~~Gi~vViGTTG~-------------s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
|+.+ +...++...+.+.|+.||--+.-| +++. |.+.-++ | -++-.||=|.-..
T Consensus 72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~---l~~~~~r-g-~IianpNCst~~l 138 (334)
T COG0136 72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEH---LIDYQKR-G-FIIANPNCSTIQL 138 (334)
T ss_pred EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHH---HHhhhhC-C-CEEECCChHHHHH
Confidence 6664 666889999999997777655543 4444 4443333 3 5888999886553
No 100
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.43 E-value=0.0011 Score=62.69 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=72.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVvI 111 (257)
+||+|+||+|-.|+.+++++.++|+++ |..+......|+... +.+ ..+.+.+ +.++ +. +.|+++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~-~~------~~Divf 73 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINS-FE------GVDIAF 73 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHH-hc------CCCEEE
Confidence 799999999999999999988889999 554444444455442 211 1344432 3333 33 689887
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEe-------------CCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVY-------------VPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViG-------------TTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
-....+.+.+.+..+.+.|+.||== -+.++.++ |+. + -.++-.||=+.-.
T Consensus 74 ~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~---i~~---~--~~iIanPnC~tt~ 136 (347)
T PRK06728 74 FSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHT---LKE---H--KGIIAVPNCSALQ 136 (347)
T ss_pred ECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHH---Hhc---c--CCEEECCCCHHHH
Confidence 3345566678888888999876632 23445543 332 1 1478888866544
No 101
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.0014 Score=60.26 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=63.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.|||+|+| +|.||+.+++.+. ..++++. ++++.. ..+++++++ ++|+||-+.
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~-~~G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~v 55 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLAS-ANGHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSAV 55 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHH-HCCCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEEC
Confidence 47999999 5999999999886 4577765 555431 135567664 789988555
Q ss_pred ChHhHHHHHHHHH----HcCCCeEEeCCCCCHHHHHHH----HHHhhhcCceEEEccCchHH
Q 025154 115 DASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSAL----SAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 115 ~p~~~~~~~~~a~----~~Gi~vViGTTG~s~e~~~~L----~~~a~~~gipvl~spNfSlG 168 (257)
....+.+.+.... ..++-+|..|+|++++....+ .+......+-++..|+++--
T Consensus 56 p~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~e 117 (308)
T PRK14619 56 SMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKE 117 (308)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHH
Confidence 4444444444432 235556666777765433322 22222322333477887643
No 102
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0012 Score=60.25 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|+||+++|+ |+||++++.-+.+...+ +-+-+.++.. .....+. ..+|+.+++|.+++.+ ..|||+-
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~~------~advv~L 68 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAVE------EADVVFL 68 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence 679999995 99999999998876522 2333444421 1111232 2566666677777774 7999999
Q ss_pred cCChHhHHHHHHHHH--HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHH
Q 025154 113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSI 170 (257)
Q Consensus 113 FT~p~~~~~~~~~a~--~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvn 170 (257)
.-.|....+.+..+. ..++.+|+=.-|.+-++ |+++.-. .+++ .=||..-=|.
T Consensus 69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~---l~~~l~~--~~vvR~MPNt~a~vg 124 (266)
T COG0345 69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIET---LERLLGG--LRVVRVMPNTPALVG 124 (266)
T ss_pred EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHH---HHHHcCC--CceEEeCCChHHHHc
Confidence 999999888888775 36777887778998765 4444432 4555 4477765443
No 103
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.40 E-value=0.0016 Score=60.64 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=57.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
-||+|+|++|-+|..+++++..+|+++|+.+...... + ..+.+++++ ++|+++-.+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~-----------~------~~~~~~~~~------~~D~vFlalp 58 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK-----------D------AAERAKLLN------AADVAILCLP 58 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc-----------C------cCCHhHhhc------CCCEEEECCC
Confidence 4899999999999999999999999999998754310 0 013344543 6898885556
Q ss_pred hHhHHHHHHHHHHcCCCeE
Q 025154 116 ASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi~vV 134 (257)
.+.+.+.+..+.+.|+.||
T Consensus 59 ~~~s~~~~~~~~~~g~~VI 77 (310)
T TIGR01851 59 DDAAREAVSLVDNPNTCII 77 (310)
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 6677888888888888655
No 104
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.35 E-value=0.00095 Score=59.34 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=76.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCC-ee-----eecCHHHHHhccc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSIS 102 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~g-v~-----v~~dl~~~l~~~~ 102 (257)
..+||+|.| +|.+|+.+++.+. ..+.+++++.|+. ..|-|..++.....+.+ +. .+-+.++++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~-~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~--- 104 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLH-EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE--- 104 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence 358999999 5999999999876 4699999999952 33556655542211111 11 1113455565
Q ss_pred cCCCccEEEEcCChHhHH-HHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 103 ~~~~~DVvIDFT~p~~~~-~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
.++||+|.++.+.... +++. +....+|+|-. .++++..+.| ++ -.|+|.|-|..
T Consensus 105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~--rGi~~~PD~~a 161 (227)
T cd01076 105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HE--RGVLVVPDILA 161 (227)
T ss_pred --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HH--CCCEEEChHHh
Confidence 4899999999666553 3333 44699999876 4565444444 33 26777788865
No 105
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=97.35 E-value=0.00065 Score=63.60 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=61.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccchhhhh--c----CCCCCCeeee--c
Q 025154 37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GEDIGMVC--D----MEQPLEIPVM--S 92 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d~g~~~--g----~~~~~gv~v~--~ 92 (257)
||||+|+ ||+||.+.+++.+. ++++++++.|.... |+--+++. + .. ...+.++ .
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence 6999997 99999999998864 46999998873210 11000000 0 00 0123333 3
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
+++++-= .+.++|+|++.|.+..+.+.+..+++.|..+|+-+
T Consensus 79 ~p~~~~w---~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPW---RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred Chhhccc---cccCCCEEEEccchhccHHHHHHHHHcCCeEEEec
Confidence 5555321 01479999999999999999999999995555433
No 106
>PLN02712 arogenate dehydrogenase
Probab=97.35 E-value=0.0036 Score=63.92 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.++||+|+| .|+||+.+++.+.+ .+.+++ ++|+.. +.... ...|+..+.++++++. ..+|+||-.
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~-~G~~V~-~~dr~~---~~~~a----~~~Gv~~~~~~~el~~-----~~aDvVILa 432 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVK-QGHTVL-AYSRSD---YSDEA----QKLGVSYFSDADDLCE-----EHPEVILLC 432 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHH-CcCEEE-EEECCh---HHHHH----HHcCCeEeCCHHHHHh-----cCCCEEEEC
Confidence 458999999 59999999998875 567877 566532 11111 1345666788888774 258999988
Q ss_pred CChHhHHHHHHHHHH--c-CCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHH
Q 025154 114 TDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (257)
Q Consensus 114 T~p~~~~~~~~~a~~--~-Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlG 168 (257)
+.|....+.+..... . .-.+|+-++.-...-.+.+++.... +..++ .-|||..-
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~-~~~~v~~HPm~G~e 490 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ-DFDILCTHPMFGPE 490 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC-CCceEeeCCCCCcc
Confidence 887777777765443 1 1246665544333334555554433 45566 66776644
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.32 E-value=0.00026 Score=57.68 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=56.3
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
..+||+|+|+ ||+|+.+.+++. ..+++++++..+... ....... ..+-..+.+++++++ ++|+++ .
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~-~ag~~v~~v~srs~~--sa~~a~~---~~~~~~~~~~~~~~~------~aDlv~-i 74 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALA-RAGHEVVGVYSRSPA--SAERAAA---FIGAGAILDLEEILR------DADLVF-I 74 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHH-HTTSEEEEESSCHH---HHHHHHC-----TT-----TTGGGC------C-SEEE-E
T ss_pred CccEEEEECC-CHHHHHHHHHHH-HCCCeEEEEEeCCcc--ccccccc---ccccccccccccccc------cCCEEE-E
Confidence 4689999996 999999999876 568999988764311 1111111 112222345667764 799887 6
Q ss_pred CChHhHHHHHHHHHHcC-----CCeEEeCCCCCHHHHHHHHHHhhh
Q 025154 114 TDASTVYDNVKQATAFG-----MRSVVYVPHIQLETVSALSAFCDK 154 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~G-----i~vViGTTG~s~e~~~~L~~~a~~ 154 (257)
|.|+...+-+...+... =.+|+=|.|-.. .+-|+-+.++
T Consensus 75 avpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~--~~vL~p~~~~ 118 (127)
T PF10727_consen 75 AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG--SDVLAPARER 118 (127)
T ss_dssp -S-CCHHHHHHHHHHCC--S-TT-EEEES-SS----GGGGHHHHHT
T ss_pred EechHHHHHHHHHHHHhccCCCCcEEEECCCCCh--HHhhhhHHHC
Confidence 66777766555544432 357877887543 2345554444
No 108
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=97.31 E-value=0.00075 Score=63.34 Aligned_cols=99 Identities=25% Similarity=0.225 Sum_probs=63.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeee--cCH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDL 94 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~--~dl 94 (257)
++||||.| .||+||.+.|++.+++++++|++=|.. -.|+--+++.-.+ ....+.++ .++
T Consensus 2 ~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (331)
T PRK15425 2 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 80 (331)
T ss_pred ceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence 37999999 599999999998878899999987621 0111111110000 01123333 255
Q ss_pred HHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
+++-= ++.++|+||+.|-.....+.+...++.|...|+=+
T Consensus 81 ~~~~w---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (331)
T PRK15425 81 ANLKW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120 (331)
T ss_pred hhCcc---cccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence 55321 01379999988888888888999999997777544
No 109
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.28 E-value=0.0032 Score=57.36 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=73.8
Q ss_pred EEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh-Hh
Q 025154 40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA-ST 118 (257)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p-~~ 118 (257)
++| .|.||..+++.+.+ .++++. ++|+.. .....+. ..|+...+++.++++ ++|+||-.-.+ ..
T Consensus 1 ~IG-lG~mG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLK-AGHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH 65 (288)
T ss_pred CCc-ccHhHHHHHHHHHh-CCCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence 468 59999999998874 567754 466531 1222232 346667788888885 78998866654 33
Q ss_pred HHHHH---HH---HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 119 VYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 119 ~~~~~---~~---a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+.+.+ .. .+..| .+|+-+++.+++..+++.+.+++.|+..+-+| .|=|.
T Consensus 66 ~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP-v~Gg~ 120 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP-VSGGV 120 (288)
T ss_pred HHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC-CCCCH
Confidence 34333 12 22334 35666777888888899888888888877766 44444
No 110
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.28 E-value=0.003 Score=57.42 Aligned_cols=118 Identities=9% Similarity=0.079 Sum_probs=73.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
+||+++|+ |.||+.+++.+.+.. ..++ -++|+.. .....+. ++.|+.++++.++++. ++|+||-
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I-~v~~r~~--~~~~~l~---~~~g~~~~~~~~e~~~------~aDiIiL 69 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQI-ICSDLNV--SNLKNAS---DKYGITITTNNNEVAN------SADILIL 69 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceE-EEECCCH--HHHHHHH---HhcCcEEeCCcHHHHh------hCCEEEE
Confidence 58999995 999999999987542 1234 3455431 1122222 1246667778888774 7899998
Q ss_pred cCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceE-EEccCchHHHH
Q 025154 113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGC-LIAPTLSIGSI 170 (257)
Q Consensus 113 FT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipv-l~spNfSlGvn 170 (257)
...|....+.+.... +.+.-+|.=..|.+-++++ ++.... .+| -.-||...-+.
T Consensus 70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~---~~l~~~-~~vvR~MPN~~~~vg 127 (272)
T PRK12491 70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE---NEFDRK-LKVIRVMPNTPVLVG 127 (272)
T ss_pred EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHH---HhcCCC-CcEEEECCChHHHHc
Confidence 888888877766543 2344445555699876644 443211 233 35588776553
No 111
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.25 E-value=0.001 Score=62.58 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=64.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCC-----CCCCeeee--cC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDME-----QPLEIPVM--SD 93 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~~~g~~-----~~~gv~v~--~d 93 (257)
++||||.| .||+||.+.+++.+.+++++|++-|+. --|+--+++.-.+ ....+.++ .|
T Consensus 2 ~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d 80 (337)
T PTZ00023 2 VVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD 80 (337)
T ss_pred ceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence 47999999 599999999998877899999986621 0111101110000 01123333 45
Q ss_pred HHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
++++-= ++.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus 81 p~~lpW---~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS 121 (337)
T PTZ00023 81 PAAIPW---GKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS 121 (337)
T ss_pred hhhCCc---cccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence 555421 11479999988888888889999999997777644
No 112
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.00083 Score=63.18 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=63.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCeeee-
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~g~~------~g~~~~~gv~v~- 91 (257)
|+||||+|+ ||+||.+.+.+.+. ++++|+++=|.. ..|+--+++ +-.. ...+.++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH 78 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence 689999997 99999999998763 579999776410 001100000 0000 1123343
Q ss_pred -cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 -~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
.+++++-= .+.++|+|++.|-.....+.+..+++.|...|+=+.
T Consensus 79 ~~~p~~~~w---~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSa 123 (336)
T PRK13535 79 ERDIASLPW---RELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSH 123 (336)
T ss_pred cCCcccCcc---cccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecC
Confidence 25554321 013799999999899999999999999977776443
No 113
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.21 E-value=0.00081 Score=63.23 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=62.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeeec--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVMS-- 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~~-- 92 (257)
|+||||.| .||+||.+.+++.+. +++++|++-|.. -.|+--+++.-.+ ....+.++.
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 78999999 599999999987766 589999987621 0111101110000 011233332
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
|++++-= ++.++|+|++.|-.....+.+...++.|...|+=+
T Consensus 80 dp~~~~W---~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 80 NPLNLPW---KEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CcccCCh---hhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 3344310 01379999998988888888999999997776543
No 114
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.19 E-value=0.0012 Score=62.19 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=64.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-----CCCCeeee--cCH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-----QPLEIPVM--SDL 94 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-----~~~gv~v~--~dl 94 (257)
++||||.| .||+||.+.+++.+.+++++|++=|.. -.|+--+++.-.+ ....+.++ .|+
T Consensus 2 ~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (343)
T PRK07729 2 KTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP 80 (343)
T ss_pred ceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence 47999999 599999999998877899999986621 0111111110000 01123333 355
Q ss_pred HHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
+++-= .+.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus 81 ~~~~W---~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS 120 (343)
T PRK07729 81 KELPW---TDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT 120 (343)
T ss_pred hhCcc---cccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence 55421 01379999999988888999999999997777644
No 115
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.19 E-value=0.0022 Score=55.85 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=90.7
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecCHHHHHhccccCCCccEEEEc
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
|+|+|++|+.|+.+++.+.+ +++++.+.+.... ......+. ..|+.+ ++|.+.+.+.+ .++|+|+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence 78999999999999999987 8899988875421 11122221 123322 33444432211 489998877
Q ss_pred CC------hHhHHHHHHHHHHcCCCeEEeCC-C--C------C-H----HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154 114 TD------ASTVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (257)
Q Consensus 114 T~------p~~~~~~~~~a~~~Gi~vViGTT-G--~------s-~----e~~~~L~~~a~~~gipvl~spNfSlGvnll~ 173 (257)
+. .+.....+.+|.+.|+..++=++ + . . . ++...++++.++.+++..+ +..|. .++
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~---i~~g~-f~e 147 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTI---IRPGF-FME 147 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEE---EEE-E-EHH
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhcccccee---ccccc-hhh
Confidence 65 34556788999999999887432 1 1 1 1 2234688999998888776 44454 233
Q ss_pred HHHHHhcC---CCCCeEEEeccCCCCCCCCCc-cHHHHHHh
Q 025154 174 QAAISASF---HYKNVEIVESRPNARVRYMTR-TLISMQVC 210 (257)
Q Consensus 174 ~~a~~l~~---~~~DiEIiE~HH~~K~DapSG-Ta~~l~~~ 210 (257)
.+...+.. ...+-..+..+...+.+.+.. +...++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~ 188 (233)
T PF05368_consen 148 NLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRA 188 (233)
T ss_dssp HHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHH
T ss_pred hhhhhhcccccccccceEEEEccCCCccccccccHHHHHHH
Confidence 33221111 111111344555555444444 66666544
No 116
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.19 E-value=0.0067 Score=53.66 Aligned_cols=155 Identities=10% Similarity=0.098 Sum_probs=100.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
||||+|+. .|.-|.+.++.+... -...++++.+.+. ... ...+.+++.|..+ ..+|++|-+
T Consensus 1 ~mki~vlt-~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~~-----------~fie~P~~~Lp~~---~e~Di~va~ 62 (224)
T COG1810 1 MMKILVLT-DGEYGKRAVNNLACKGFKNQFVAVKEYPE---ELP-----------DFIEEPEDLLPKL---PEADIVVAY 62 (224)
T ss_pred CcEEEEEe-eccchHHHHHhHhhhccccceEEEEeccc---ccc-----------chhhCHHHhcCCC---CCCCEEEEe
Confidence 79999999 699999999998743 2356777776431 011 1234556666532 478999999
Q ss_pred C-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH----HHHHHHHHHHHhcCCCCCeEE
Q 025154 114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI----GSILLQQAAISASFHYKNVEI 188 (257)
Q Consensus 114 T-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl----Gvnll~~~a~~l~~~~~DiEI 188 (257)
+ +|+..++..+.+.+.|...||--.+-..--.++|++.+.+.|+-+.+--+|-- |---+..|+..+.+....+|+
T Consensus 63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev 142 (224)
T COG1810 63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEV 142 (224)
T ss_pred ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEe
Confidence 7 89999999999888887666533322234467799999987766654444421 111377888777654333333
Q ss_pred E-----eccCCCCCCCCCccHHHHHH
Q 025154 189 V-----ESRPNARVRYMTRTLISMQV 209 (257)
Q Consensus 189 i-----E~HH~~K~DapSGTa~~l~~ 209 (257)
- .. .=+..||=|.+--+|.
T Consensus 143 ~~~~i~~V--~V~RsaPCGsT~~vAk 166 (224)
T COG1810 143 ENGKIKDV--DVLRSAPCGSTWYVAK 166 (224)
T ss_pred cCCeEEEE--EEEecCCCchHHHHHH
Confidence 1 12 2345589888776664
No 117
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.18 E-value=0.0026 Score=62.37 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=68.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|.+|+|+| .|.||+.+++.+. +.+++|. ++|+.. ....++.......| +..+++++++++.+ .++|+||-
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~-~~G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIA-SRGFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL 72 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHH-HCCCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence 56899999 5999999999887 4577755 577531 11122221100113 44578899888521 25897776
Q ss_pred c-CChHhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCce
Q 025154 113 F-TDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 158 (257)
Q Consensus 113 F-T~p~~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gip 158 (257)
+ +.++.+.+.+ ...++.|.-+|-++|++..+..+..+++ ++.|+.
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l-~~~Gi~ 121 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRC-EEKGIL 121 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCe
Confidence 6 4444444443 3445667777777887755554444444 444554
No 118
>PLN02256 arogenate dehydrogenase
Probab=97.18 E-value=0.0075 Score=55.85 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.++||+|+| +|.||+.+++.+.+ .+.++.+ +++... .+.+ ...|+..+.++++++. ..+|+||-.
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~-~G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVila 99 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVK-QGHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVLLC 99 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEEEe
Confidence 357999999 59999999998875 4677774 554321 1111 1345666788888764 268999988
Q ss_pred CChHhHHHHHHHH-HH--cCCCeEEeCCCCCHHHHHHHHHH
Q 025154 114 TDASTVYDNVKQA-TA--FGMRSVVYVPHIQLETVSALSAF 151 (257)
Q Consensus 114 T~p~~~~~~~~~a-~~--~Gi~vViGTTG~s~e~~~~L~~~ 151 (257)
+.|....+.+... .. ..-.+|+-.......-.+.+++.
T Consensus 100 vp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~ 140 (304)
T PLN02256 100 TSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQV 140 (304)
T ss_pred cCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHh
Confidence 8888777777655 22 12235554444322233445443
No 119
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=97.16 E-value=0.0015 Score=63.32 Aligned_cols=99 Identities=22% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhc-CC-----CCCCeeeec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCD-ME-----QPLEIPVMS 92 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g-~~-----~~~gv~v~~ 92 (257)
.++||+|+| .||+||.+.|.+.+. +++++|++=|.. -.|+--+++.- .+ ....+.++.
T Consensus 74 ~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 74 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred ceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 349999999 599999999987655 689999986621 01111111100 00 001233332
Q ss_pred --CHHHHH-hccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 93 --DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 93 --dl~~~l-~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
|+.++- .+ .++|+||+.|-.....+.+...++.|...|+=+
T Consensus 153 ~~dp~~l~W~~----~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS 196 (442)
T PLN02237 153 NRDPLKLPWAE----LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 196 (442)
T ss_pred cCCchhCChhh----cCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence 333321 11 379999998988888899999999997777654
No 120
>PLN02712 arogenate dehydrogenase
Probab=97.10 E-value=0.0083 Score=61.26 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
..++||+|+| .|+||+.+++.+.+. +++|++ +|+.. .. ..+ ...|+..+.++++++. ..+|+||-
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~-G~~V~~-~dr~~-~~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQ-GHTVLA-HSRSD-HS---LAA---RSLGVSFFLDPHDLCE-----RHPDVILL 114 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEE-EeCCH-HH---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence 3468999999 599999999988754 688765 55431 11 111 2456777888888664 26899998
Q ss_pred cCChHhHHHHHHHHH-Hc-C-CCeEEeCCCCCHHHHHHHHHHh
Q 025154 113 FTDASTVYDNVKQAT-AF-G-MRSVVYVPHIQLETVSALSAFC 152 (257)
Q Consensus 113 FT~p~~~~~~~~~a~-~~-G-i~vViGTTG~s~e~~~~L~~~a 152 (257)
.+.+....+.+.... .. + -.+|+=++.....-.+.+++..
T Consensus 115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 115 CTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred cCCHHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 888887777666543 21 1 2366656544433334444443
No 121
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.09 E-value=0.0038 Score=51.88 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=52.4
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----ecCH---HHHHhccccCCCccEE
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV 110 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~~dl---~~~l~~~~~~~~~DVv 110 (257)
|+|.||+|.+|+.+++.+.+. +.++.+.+.++. ...+ ..++.+ ..|+ .+++ .++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~------~~~~~~~~~d~~d~~~~~~al------~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAED------SPGVEIIQGDLFDPDSVKAAL------KGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHH------CTTEEEEESCTTCHHHHHHHH------TTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hccc------ccccccceeeehhhhhhhhhh------hhcchh
Confidence 789999999999999998865 499998886431 1111 112222 2344 4445 379999
Q ss_pred EEcCC-----hHhHHHHHHHHHHcCCCeEE
Q 025154 111 IDFTD-----ASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 111 IDFT~-----p~~~~~~~~~a~~~Gi~vVi 135 (257)
|+.-. .+.....+..+.+.|++-++
T Consensus 65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~v 94 (183)
T PF13460_consen 65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRVV 94 (183)
T ss_dssp EECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred hhhhhhhcccccccccccccccccccccce
Confidence 98753 23345556666677875544
No 122
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=97.08 E-value=0.0023 Score=57.96 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=57.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee------ecCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v------~~dl~~~l~~~~~~~~~DV 109 (257)
|||.|.|+||- |+.+++.+.+ .++++++-+.... +... +.. ..+.++ ..++.+.+.+ .++|+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~-~g~~v~~s~~t~~-~~~~--~~~---~g~~~v~~g~l~~~~l~~~l~~----~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIA-QGIEILVTVTTSE-GKHL--YPI---HQALTVHTGALDPQELREFLKR----HSIDI 68 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHh-CCCeEEEEEccCC-cccc--ccc---cCCceEEECCCCHHHHHHHHHh----cCCCE
Confidence 58999999997 9999998875 4688887665432 2111 000 011222 2234455543 67999
Q ss_pred EEEcCChHhH---HHHHHHHHHcCCCeE
Q 025154 110 VIDFTDASTV---YDNVKQATAFGMRSV 134 (257)
Q Consensus 110 vIDFT~p~~~---~~~~~~a~~~Gi~vV 134 (257)
|||.|+|-+. ......|.+.|+|.+
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999998664 456688899999987
No 123
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.08 E-value=0.015 Score=53.26 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=62.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
..||+|+| +|.||..+++.+... +. .-+.++|+.. ....... ..|+ .+..++++++. ++|+||
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~-g~~~~V~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVi 71 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRL-GLAGEIVGADRSA--ETRARAR----ELGLGDRVTTSAAEAVK------GADLVI 71 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhc-CCCcEEEEEECCH--HHHHHHH----hCCCCceecCCHHHHhc------CCCEEE
Confidence 46899999 599999999988754 43 2344666531 1111111 1222 34567777774 799999
Q ss_pred EcCChHhHHHHHHHHH---HcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154 112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~ 161 (257)
..+.+....+.+.... +.+. +|+-.++.+.+..+.+.+...+ ++.++-
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~~~~-~~~~v~ 122 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPHLPE-GVHFIP 122 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHhCCC-CCeEEe
Confidence 8887766555544332 3343 4554555555444445443322 344443
No 124
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.06 E-value=0.0012 Score=57.35 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|||+|+||+|+.|+.|++.+. ..++|+++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHH-hCCCeeEEEEeC
Confidence 799999999999999999876 689999999864
No 125
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.04 E-value=0.01 Score=57.53 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=68.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||+|+|++|.||+.+++.+.. .+.++. ++++.. ....+++ ...|+...+++++.+. .+|+||-.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~-~G~~V~-v~~r~~--~~~~~~a---~~~gv~~~~~~~e~~~------~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE-KGFEVI-VTGRDP--KKGKEVA---KELGVEYANDNIDAAK------DADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH-CCCEEE-EEECCh--HHHHHHH---HHcCCeeccCHHHHhc------cCCEEEEecC
Confidence 5899998679999999998864 566654 345431 1111222 1345666678887774 7899998887
Q ss_pred hHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154 116 ASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 162 (257)
Q Consensus 116 p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~s 162 (257)
++...+.+...... .-.+|+-++.....-.+.+++.... +..++-+
T Consensus 68 ~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~-~~~~V~~ 115 (437)
T PRK08655 68 INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE-GVEILPT 115 (437)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC-CCEEEEc
Confidence 77776666555432 1225554444334445566665432 3444433
No 126
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.01 E-value=0.0051 Score=56.28 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=65.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-------ecCHHHHHhccccCCCcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA 108 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D 108 (257)
|||.|+||+|.+|+.+++.+.+ .++++.+...+.. ....+. ..++.+ .+++.++++ ++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al~------g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSFK------GVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHHC------CCC
Confidence 5899999999999999998875 5789887764321 111111 112222 123445563 789
Q ss_pred EEEEcCCh-------------HhHHHHHHHHHHcCCC-eE-EeCCC-----CCH--HHHHHHHHHhhhcCceEEE
Q 025154 109 VVIDFTDA-------------STVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 109 VvIDFT~p-------------~~~~~~~~~a~~~Gi~-vV-iGTTG-----~s~--e~~~~L~~~a~~~gipvl~ 161 (257)
+||.+... ......+++|.+.|+. +| +++.| .++ +...+.+++.++.++++.+
T Consensus 67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~ti 141 (317)
T CHL00194 67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTI 141 (317)
T ss_pred EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEE
Confidence 99987531 1224566778888874 43 23322 111 1123456666776777543
No 127
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=96.99 E-value=0.0026 Score=61.06 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=62.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcc-------hhhhhcCCCCCCeeeec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGED-------IGMVCDMEQPLEIPVMS 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d-------~g~~~g~~~~~gv~v~~ 92 (257)
++||+|+|+ ||+||.+.+.+.+. +..+|+++=|.. ..|+- .+..+-.. ...+.++.
T Consensus 60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVVS 137 (395)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEEE
Confidence 389999997 99999999998766 689999775411 00110 01100000 11234432
Q ss_pred --CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 93 --DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 93 --dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
|++++-= .+.++|+||+.|-.....+.+...++.|...|+=+
T Consensus 138 ~~dp~~~~w---~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 138 DRNPLNLPW---GELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred cCCcccccc---cccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 4554321 01379999999988888889999999997777544
No 128
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.98 E-value=0.0026 Score=61.46 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=59.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhc-CC-----CCCCeeee--c
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCD-ME-----QPLEIPVM--S 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~~~g-~~-----~~~gv~v~--~ 92 (257)
|+||+|+| .||+||.+.+.+.++++++++++-|+.. .|+-.+++.- .. ....+.++ .
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 57999999 5999999999887678999999877321 0111111100 00 00112333 2
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCC-CeEEeC
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYV 137 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi-~vViGT 137 (257)
+++++-= ++.++|+|++.|-.....+.+...++.|. .+||-.
T Consensus 164 dp~~~~w---~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIda 206 (421)
T PLN02272 164 DPAEIPW---GDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA 206 (421)
T ss_pred CcccCcc---cccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECC
Confidence 4444321 01268999988877777788888888885 344443
No 129
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.97 E-value=0.0033 Score=54.08 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=66.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCC-CCCCeeeecCHHHHHhcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDME-QPLEIPVMSDLTMVLGSI 101 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~~~g~~-~~~gv~v~~dl~~~l~~~ 101 (257)
|||+|+| .|.+|-.++..++ +.+++++| +|.+ .......+++... ......+++|.++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA-~~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALA-EKGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHH-HTTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred CEEEEEC-CCcchHHHHHHHH-hCCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 7999999 6999999997665 67898887 4521 1111122222110 0234567788888775
Q ss_pred ccCCCccEEEEcC-Ch------------HhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHH-HHHHhhh-cCceEEEcc
Q 025154 102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSA-LSAFCDK-ASMGCLIAP 163 (257)
Q Consensus 102 ~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~-L~~~a~~-~gipvl~sp 163 (257)
++|+++-+- +| ..+.+.+...++.+.-+|+.+| |.+++.... |++...+ ....+.++|
T Consensus 76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 689776542 22 3445566666677888888887 777755433 4444421 235677777
Q ss_pred CchH
Q 025154 164 TLSI 167 (257)
Q Consensus 164 NfSl 167 (257)
=|=.
T Consensus 152 Erl~ 155 (185)
T PF03721_consen 152 ERLR 155 (185)
T ss_dssp ----
T ss_pred CccC
Confidence 6543
No 130
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.013 Score=53.36 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=115.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCC--------cEEEEEEecC--CCCcch------hhhhc-CCCCCCeeeecCHHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARG--------MEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTMV 97 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--------~eLvg~vd~~--~~g~d~------g~~~g-~~~~~gv~v~~dl~~~ 97 (257)
.++|+++|| |.+|+.+.+.+..-.. +.++++.|.. ...+|. .+|.. .....+- .-+++++
T Consensus 3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~--alsLdaL 79 (364)
T KOG0455|consen 3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS--ALSLDAL 79 (364)
T ss_pred cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC--cccHHHH
Confidence 578999995 9999999988865433 5688888732 111221 11110 0001111 1247777
Q ss_pred HhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCceEEEccCchHHHHH-HH
Q 025154 98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL-LQ 173 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl-l~ 173 (257)
++.+.....+-+++|.|......+....+++.|+.++ |+ .|+. ..+..++++.....|-|+-.--++|.-| +-
T Consensus 80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~Ia--tpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGLPiI 156 (364)
T KOG0455|consen 80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIA--TPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGLPII 156 (364)
T ss_pred HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEe--cCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCchhH
Confidence 7665545667899999999999999999999999976 44 3543 2333444444433566666666777755 22
Q ss_pred HHHHHhcCCCCCeEEEeccCCCCCCCCCccHHHH------------------HHhhhccccCCCCCCC-ceeeeeecCCc
Q 025154 174 QAAISASFHYKNVEIVESRPNARVRYMTRTLISM------------------QVCLRHIYLYPKFQNN-NSFHTKRKLKI 234 (257)
Q Consensus 174 ~~a~~l~~~~~DiEIiE~HH~~K~DapSGTa~~l------------------~~~~r~g~~~~r~~~~-Igi~s~R~G~I 234 (257)
...+++-..+..++=+|- .-|||+-.+ ......|+++|-+.++ -|...-|.+.|
T Consensus 157 s~L~eiI~tGDev~kIeG-------ifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKvtI 229 (364)
T KOG0455|consen 157 SSLNEIISTGDEVHKIEG-------IFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTI 229 (364)
T ss_pred HHHHHHHhcCCceeEEEE-------EeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcccccccchhhhhhhh
Confidence 222222223445544442 234554433 1233568887755444 57889999999
Q ss_pred ceeecc
Q 025154 235 ASSIIG 240 (257)
Q Consensus 235 vG~f~g 240 (257)
++.+.|
T Consensus 230 l~Ri~G 235 (364)
T KOG0455|consen 230 LARILG 235 (364)
T ss_pred hhhhcc
Confidence 998554
No 131
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.94 E-value=0.0019 Score=59.91 Aligned_cols=86 Identities=21% Similarity=0.185 Sum_probs=62.4
Q ss_pred EecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC------ChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 67 vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT------~p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
+|+...|++++++++. ..++|++++++++ . ..+|++|-=. .|+.+.+.+..|+++|++||.|---+
T Consensus 1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~ 72 (301)
T PF07755_consen 1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF 72 (301)
T ss_dssp E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence 5777889999999886 3899999999999 3 4899888642 58899999999999999999987653
Q ss_pred CHHHHHHHHHHhhhcCceEEE
Q 025154 141 QLETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 141 s~e~~~~L~~~a~~~gipvl~ 161 (257)
..+..+|.++|+++|+.++-
T Consensus 73 -L~ddpel~~~A~~~g~~i~D 92 (301)
T PF07755_consen 73 -LSDDPELAAAAKKNGVRIID 92 (301)
T ss_dssp -HCCHHHHHCCHHCCT--EEE
T ss_pred -hccCHHHHHHHHHcCCeEee
Confidence 23456899999998887773
No 132
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.90 E-value=0.0087 Score=58.90 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=68.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------hcCC-CCCC-eeeecCHHHHHhcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI 101 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~~-----------~g~~-~~~g-v~v~~dl~~~l~~~ 101 (257)
+||+|+|+ |.||..++..+.. .++++. ++|+.... ....+. .+.. ...+ +.+.+|++++++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~-~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~-- 79 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLL-AGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA-- 79 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence 58999995 9999999998874 578765 56743100 011000 0000 0112 567789988875
Q ss_pred ccCCCccEEEEcCChHh-----HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154 102 SQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 102 ~~~~~~DVvIDFT~p~~-----~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf 165 (257)
++|+||....++. ++.-+...+..+.-+.+.|.|++..+ +.+.+++.+.-++-.||.
T Consensus 80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n 141 (495)
T PRK07531 80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN 141 (495)
T ss_pred ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence 7999997765443 12223333344444556666888654 445555555556666654
No 133
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0033 Score=58.56 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC------ChHhHHH
Q 025154 48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD 121 (257)
Q Consensus 48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT------~p~~~~~ 121 (257)
|+...-++.....+.+++++|....+.+....++. ...++++.++++++++. ..|++|.-. .|+...+
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence 55555555556669999999987666444433333 36799999999999973 458877764 4788889
Q ss_pred HHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceE
Q 025154 122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 159 (257)
Q Consensus 122 ~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipv 159 (257)
.+..|+++|++||.|---+ .++...+.++|++.|+.+
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~rl 125 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVRL 125 (339)
T ss_pred HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCee
Confidence 9999999999999876655 566778999999977633
No 134
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.89 E-value=0.014 Score=57.54 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeecCHHHHHhccccCCCccEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVv 110 (257)
.+.+|+++| .|.||+.+++.+.. .+++|+ ++|+.. .....+.......| +..+++++++.+.+ ..+|+|
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~-~G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dvI 76 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRSV 76 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHh-CCCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCEE
Confidence 356899999 69999999999874 678776 677531 11222221000112 23567888877521 248877
Q ss_pred EEc-CChHhHHHH---HHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 111 IDF-TDASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 111 IDF-T~p~~~~~~---~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
|-. +.++.+.+. +..+++.|.=+|-++|. +.++..++.+.+++.|+..+
T Consensus 77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred EEECCCcHHHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEE
Confidence 743 234444333 33344455444434443 34445556666666566533
No 135
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.88 E-value=0.016 Score=55.54 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-C--------------CCCCC-eeeecCHHHHHh
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-M--------------EQPLE-IPVMSDLTMVLG 99 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~--------------~~~~g-v~v~~dl~~~l~ 99 (257)
|||+|+| .|.||..++..+. ..++++++ +|... ..+..+.. . ....| +..++++++++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La-~~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLA-DLGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHH-hcCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 5899999 5999999999876 46788765 56421 00111110 0 00113 566778888774
Q ss_pred ccccCCCccEEEEcCC-hH---------hHHHHH---HHHHHcCCCeEEeCC---CCCHHHHHHHHHH-h--h-hcCceE
Q 025154 100 SISQSKARAVVIDFTD-AS---------TVYDNV---KQATAFGMRSVVYVP---HIQLETVSALSAF-C--D-KASMGC 159 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT~-p~---------~~~~~~---~~a~~~Gi~vViGTT---G~s~e~~~~L~~~-a--~-~~gipv 159 (257)
++|++|-... |. ...+.+ ...++.|.-+|..+| |.+.+-.+.+.+. . + ....++
T Consensus 76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7998886542 32 133322 223344555555444 4443322233221 1 0 112588
Q ss_pred EEccCchHH
Q 025154 160 LIAPTLSIG 168 (257)
Q Consensus 160 l~spNfSlG 168 (257)
..+|.|..-
T Consensus 150 ~~~Pe~~~~ 158 (411)
T TIGR03026 150 AYNPEFLRE 158 (411)
T ss_pred EECCCcCCC
Confidence 999987643
No 136
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.87 E-value=0.0059 Score=56.87 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=68.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
.||+|+| +|+||+++++.+.. .+++++...++. ......+. +.|+.+. +.+++++ .+|+|+-...
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~~-sG~~Viv~~~~~--~~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp 68 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLRD-SGLNVIVGLRKG--GASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP 68 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHHH-CCCeEEEEECcC--hhhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence 5899999 59999999998874 567765545432 11222221 2355554 4677764 7999997777
Q ss_pred hHhHHHHHH----HHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHH
Q 025154 116 ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG 168 (257)
Q Consensus 116 p~~~~~~~~----~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlG 168 (257)
|+.....+. ..++.+ .+|+=..|++-+.. +..-.+ +++|+ +.||...-
T Consensus 69 p~~~~~~v~~ei~~~l~~g-~iVs~aaG~~i~~~---~~~~~~-~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEG-KTLGFSHGFNIHFV---QIVPPK-DVDVVMVAPKGPGT 121 (314)
T ss_pred cHhHHHHHHHHHHhhCCCC-cEEEEeCCccHhhc---cccCCC-CCcEEEECCCCCcH
Confidence 773333222 223334 36766779986543 332221 24555 78888754
No 137
>PLN02522 ATP citrate (pro-S)-lyase
Probab=96.86 E-value=0.0041 Score=62.69 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=61.5
Q ss_pred CCCeeeecCHHHHHhccccCCCccEEEEcCChHhHHH-HHHHHHHcCCCeEEe-CCCCCHHHHHHHHHHhhhcCceEEEc
Q 025154 85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYD-NVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIA 162 (257)
Q Consensus 85 ~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~-~~~~a~~~Gi~vViG-TTG~s~e~~~~L~~~a~~~gipvl~s 162 (257)
..++|||++++++.++ ..++|+.|.|-+|..+.+ .++.|.+.|++.++- |.|+.+.+.++|.++|+++|+. ++.
T Consensus 60 ~~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIG 135 (608)
T PLN02522 60 EIAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIG 135 (608)
T ss_pred eeCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EEC
Confidence 5689999999999974 136899999998777665 555555679886655 5599887778899999999875 678
Q ss_pred cCchHHH
Q 025154 163 PTLSIGS 169 (257)
Q Consensus 163 pNfSlGv 169 (257)
|| ++|+
T Consensus 136 PN-c~Gi 141 (608)
T PLN02522 136 PA-TVGG 141 (608)
T ss_pred CC-CCee
Confidence 88 4455
No 138
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.85 E-value=0.0071 Score=53.45 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=73.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-CCCCeeee-----cCHHHHHhcccc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSISQ 103 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~-~~~gv~v~-----~dl~~~l~~~~~ 103 (257)
.+||+|.| .|++|+.+++.+.+ .+..+|++.|+. . |-|..++.... ...++..+ .+.++++.
T Consensus 23 g~~vaIqG-fGnVG~~~a~~L~~-~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---- 95 (217)
T cd05211 23 GLTVAVQG-LGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---- 95 (217)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee----
Confidence 47999999 59999999998874 589999999953 3 55544333110 01122221 13355554
Q ss_pred CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
.++||+|..+..... +-..+.+.+.++|++-- .++++..+.| ++. .++|.|-+-..
T Consensus 96 -~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~--Gi~v~Pd~~~N 153 (217)
T cd05211 96 -LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HER--GIVVAPDIVAN 153 (217)
T ss_pred -ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHhc
Confidence 489999988865433 33444567899999765 3455433333 343 47777877653
No 139
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.84 E-value=0.0029 Score=51.58 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=62.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe----eeecCHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVv 110 (257)
..||+|+|+ |.||+.+++.+.+.. ..-+.++++.. ....++.. ..+. ..+.+++++++ ++|+|
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~Dvv 85 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELLA------EADLI 85 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhccc------cCCEE
Confidence 468999996 999999999887653 44455666531 11122211 1121 13456666653 79999
Q ss_pred EEcCChHhH----HHHHHHHHHcCCCeE-EeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 111 IDFTDASTV----YDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 111 IDFT~p~~~----~~~~~~a~~~Gi~vV-iGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
|-.+.+... .......++.+.-++ +.++... . .+.+.+++.|+.++
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~--~--~l~~~~~~~g~~~v 136 (155)
T cd01065 86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE--T--PLLKEARALGAKTI 136 (155)
T ss_pred EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC--C--HHHHHHHHCCCcee
Confidence 988866553 112233455665444 2233221 1 56677778777665
No 140
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.78 E-value=0.016 Score=52.50 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=57.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-e-eecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
|||+|+| +|.||..++..+.+ .++++. ++|+.. ....... ..|. . ..++.+ .+. ++|+||..
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~-~g~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~-~~~------~aDlVila 64 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRS-LGHTVY-GVSRRE--STCERAI----ERGLVDEASTDLS-LLK------DCDLVILA 64 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HCCCcccccCCHh-Hhc------CCCEEEEc
Confidence 5899999 59999999998875 467754 456431 1111221 1121 1 233443 443 79999988
Q ss_pred CChHhHHHHHHHHHHc-C-CCeEEeCCCCCHHHHHHHH
Q 025154 114 TDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALS 149 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~-G-i~vViGTTG~s~e~~~~L~ 149 (257)
+.+....+.+...... + -.+|+-+++...+..+.+.
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~ 102 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE 102 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH
Confidence 8877777766655443 2 2355555556554444443
No 141
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.76 E-value=0.0051 Score=56.52 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=80.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---E
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---V 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---v 110 (257)
+.+|.|+|. |.|+.-+.++... ++++|+|++..-. +.-.+++ ..+||+.|...|++-+ ++|+ |
T Consensus 4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVv 70 (361)
T COG4693 4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV 70 (361)
T ss_pred CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEE
Confidence 348999994 9999988888776 8999999987421 1112333 3689999999999875 5663 3
Q ss_pred EEcC-ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154 111 IDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 111 IDFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~ 161 (257)
|--+ .-..-.+.++..+++|++|+.+-+ +-++++..+.++|++.|....+
T Consensus 71 Vrsai~Gg~Gs~larall~RGi~VlqEHP-l~p~di~~l~rlA~rqG~~y~v 121 (361)
T COG4693 71 VRSAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRYLV 121 (361)
T ss_pred EeeeeecCCcHHHHHHHHHcccHHHHhCC-CCHHHHHHHHHHHHHhCcEEEE
Confidence 3222 233446778888999999988777 4466788888888887765553
No 142
>PRK08223 hypothetical protein; Validated
Probab=96.76 E-value=0.017 Score=53.34 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=59.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIG-----MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g-----~~~g~~~~~gv~v~-- 91 (257)
.-||+|+|+ |.+|..+++.++. .++.=..++|.+ ..|+.-. .+..+.....|.++
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~-aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLAR-LGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHH-hCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 358999996 9999999998874 566666777732 0111100 11111111122221
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCCh---HhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~p---~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++.+++++ ++|+|||.+.. +.-+..-..|.++|+|+|.|.+
T Consensus 105 ~l~~~n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 105 GIGKENADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred ccCccCHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 34556664 68998988753 5556677888899999888743
No 143
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.76 E-value=0.019 Score=53.29 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=86.3
Q ss_pred cccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH
Q 025154 15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL 94 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl 94 (257)
.++++...+.+..+++-+.++.|||-+| .|-||..++..+.. .++.++ ++|+.. .-..++. +.|..+.+++
T Consensus 15 ~~~~~~~~~~~~~s~~~~~s~~~iGFIG-LG~MG~~M~~nLik-~G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sP 85 (327)
T KOG0409|consen 15 FSRRLVKASETAMSSRITPSKTRIGFIG-LGNMGSAMVSNLIK-AGYKVT-VYDRTK--DKCKEFQ----EAGARVANSP 85 (327)
T ss_pred hcccccccccccccccCCcccceeeEEe-eccchHHHHHHHHH-cCCEEE-EEeCcH--HHHHHHH----HhchhhhCCH
Confidence 3455555444444444444678999999 79999999999885 577765 566431 1112232 4577888999
Q ss_pred HHHHhccccCCCccEEEEc-CChHhHHHHHHH------HHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 95 TMVLGSISQSKARAVVIDF-TDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDF-T~p~~~~~~~~~------a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
.|+.+ .+||+|-. +.|..+.+.+.- .+.-|.+..|--|..+++-..+|.+.++..+ +.++-+--|=
T Consensus 86 aeVae------~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~-~~~vDAPVSG 158 (327)
T KOG0409|consen 86 AEVAE------DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG-GRFVDAPVSG 158 (327)
T ss_pred HHHHh------hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC-CeEEeccccC
Confidence 99985 78987753 566666655432 2224444434445566777777877776655 3444444554
Q ss_pred HH
Q 025154 168 GS 169 (257)
Q Consensus 168 Gv 169 (257)
|+
T Consensus 159 g~ 160 (327)
T KOG0409|consen 159 GV 160 (327)
T ss_pred Cc
Confidence 54
No 144
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.70 E-value=0.022 Score=52.47 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=75.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT- 114 (257)
+||+.+| .|.||.-+++.+. +.++++. ++|+.. .+. .+++ ...|.....++.++.. .+||||-+=
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~-~aG~~v~-v~~r~~-~ka-~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLL-KAGHEVT-VYNRTP-EKA-AELL---AAAGATVAASPAEAAA------EADVVITMLP 66 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHH-HCCCEEE-EEeCCh-hhh-hHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence 5899999 7999999999987 4577665 566431 111 2222 1346777888877775 799988763
Q ss_pred ChHhHHHHHH---HHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccC
Q 025154 115 DASTVYDNVK---QATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 164 (257)
Q Consensus 115 ~p~~~~~~~~---~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spN 164 (257)
.++.+.+.+. -.++ .|.-+|- .+..+++..+++.+.+++.|...+=+|=
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 4555555442 2333 3555544 4446788888999999998888776663
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.69 E-value=0.013 Score=52.47 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||+|+|+ |.+|..+++.+.. .++.=..++|.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~-~Gvg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAA-AGVGNLTLLDF 56 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 358999996 9999999998875 56666667774
No 146
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.66 E-value=0.0052 Score=55.94 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=49.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT- 114 (257)
|||.|+|++|-+|+.+.+.+.+ .++++++. ++.. .|+ .-.+.+.+.+.+ .+||+||.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--~dl------------~d~~~~~~~~~~----~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--LDL------------TDPEAVAKLLEA----FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--S-T------------TSHHHHHHHHHH----H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--cCC------------CCHHHHHHHHHH----hCCCeEeccce
Confidence 7999999999999999998764 77887776 3321 111 112233455543 4799999874
Q ss_pred ---------ChHhH--------HHHHHHHHHcCCCeEE
Q 025154 115 ---------DASTV--------YDNVKQATAFGMRSVV 135 (257)
Q Consensus 115 ---------~p~~~--------~~~~~~a~~~Gi~vVi 135 (257)
.|+.. ...++.|.+.|.++|-
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~ 98 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIH 98 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEE
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEE
Confidence 33322 2456788889999873
No 147
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.62 E-value=0.031 Score=50.44 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=48.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|||+|+| .|.||+.+++.+.+. ++ ++. ++|+.. ....... ..|+. ...+++++. ++|+||-
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~-g~~~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vil 64 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEK-GLISKVY-GYDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFL 64 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhc-CCCCEEE-EEcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEE
Confidence 4899999 599999999988754 43 444 466431 1111111 22332 234666643 4899998
Q ss_pred cCChHhHHHHHHHHH
Q 025154 113 FTDASTVYDNVKQAT 127 (257)
Q Consensus 113 FT~p~~~~~~~~~a~ 127 (257)
.+.|+...+.+....
T Consensus 65 avp~~~~~~~~~~l~ 79 (275)
T PRK08507 65 AIPVDAIIEILPKLL 79 (275)
T ss_pred eCcHHHHHHHHHHHh
Confidence 888888877776554
No 148
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.62 E-value=0.036 Score=49.44 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=56.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh----h-----hhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG----M-----VCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g----~-----~~g~~~~~gv~v~-- 91 (257)
..||+|+|+ |..|..+++.+.. .++.=.-++|... .. .++| + +..+.....+..+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar-~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALAR-SGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 358999995 9999999999875 4554444566320 00 1111 0 1111001112222
Q ss_pred ----cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEe
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViG 136 (257)
+++++++. .++|+|||.. .++.-.....+|.++++|+|..
T Consensus 89 ~i~~~~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 89 FLTPDNSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred ecCHhHHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 23445554 3689999986 4566677888899999999854
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=96.61 E-value=0.03 Score=61.59 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=76.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
+-.||+++| .|.||..+++.+.. .++++. ++|+.. .....+. ..|..+.+++.++.+ .+|+||-+
T Consensus 3 ~~~~IGfIG-LG~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVG-LDSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVV 67 (1378)
T ss_pred CCCeEEEEc-hhHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEE
Confidence 446899999 69999999999874 578875 677531 1122332 346677889999885 68987754
Q ss_pred C-ChHhHHHHH---HHHHH---cCCCeEEeCCCCCHHHHHHHHHHhhhcC--ceEEEccCchHHH
Q 025154 114 T-DASTVYDNV---KQATA---FGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPTLSIGS 169 (257)
Q Consensus 114 T-~p~~~~~~~---~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a~~~g--ipvl~spNfSlGv 169 (257)
- .++.+.+.+ ...++ .| .+|+-++..+++..+++.+.+++.| +..+=+ -.|=|.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~ 130 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSKGM 130 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcCCH
Confidence 3 445555543 12232 23 3566666677778888888777766 554433 344344
No 150
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.60 E-value=0.015 Score=49.43 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=24.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
||+|+|+ |.||..+++.+.. .++.=+.++|.
T Consensus 1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDF 31 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 6999996 9999999998874 56654556774
No 151
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.53 E-value=0.026 Score=45.79 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=24.8
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
||.|+|+ |++|..+++.+.. .++.=..++|.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDF 31 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcC
Confidence 6899996 9999999999874 56655567774
No 152
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.53 E-value=0.019 Score=53.94 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=58.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhhcCCCCCCeeee
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g-----------~~~g~~~~~gv~v~ 91 (257)
..||+|+|+ |.+|..+++.+.. .++.-+.++|.... . .|++ .+..+.....+..+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 458999996 9999999998874 57766667774310 1 1111 01111011122111
Q ss_pred ------cCHHHHHhccccCCCccEEEEcCCh-HhHHHHHHHHHHcCCCeEEeC
Q 025154 92 ------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViGT 137 (257)
.++++++. ++|+|||.+.. +.-.-.-..|.++|+|+|.|.
T Consensus 102 ~~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 102 VTDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred eccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 23455663 79999999854 443445578889999999764
No 153
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.52 E-value=0.066 Score=48.91 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=57.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCc-------chh---------hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGE-------DIG---------MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~-------d~g---------~~~g~~~~~gv~v~-- 91 (257)
..+|+|+|+ |..|..+++.++. .++.=+-++|.. ...+ ++| .+..+.....+..+
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar-~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALAR-TGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 358999995 9999999998875 454444456632 1111 111 01111001112111
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG 136 (257)
++.++++. .++|+|||... +..-....++|.++++|+|..
T Consensus 108 ~i~~e~~~~ll~-----~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 108 FITPDNVAEYMS-----AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred ccChhhHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 23445553 36899999874 466677889999999998843
No 154
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.49 E-value=0.032 Score=54.87 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=68.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEEEecC-------------CCCcchhhhhcCCCCCCeeeecCHHHHHhc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS 100 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~-------------~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~ 100 (257)
||||+|+| .|.||..++-.+++. .+++++++ |.. .......+++.........+++|+++.+.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~- 77 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA- 77 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence 68999999 599999999877754 36878765 521 01112223321100112566788887774
Q ss_pred cccCCCccEEEEc-CChH-----------------hHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHHHhhhcCceE
Q 025154 101 ISQSKARAVVIDF-TDAS-----------------TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC 159 (257)
Q Consensus 101 ~~~~~~~DVvIDF-T~p~-----------------~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~~a~~~gipv 159 (257)
++|++|-. .+|. .+.+.+...++.|.-||+.+| |.+++-.+.|.+........+
T Consensus 78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 78987654 2332 112222333455777777777 666544444554322112456
Q ss_pred EEccCc
Q 025154 160 LIAPTL 165 (257)
Q Consensus 160 l~spNf 165 (257)
.++|=|
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 666655
No 155
>PLN02858 fructose-bisphosphate aldolase
Probab=96.48 E-value=0.041 Score=60.52 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=76.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
+.||+++| .|.||..+++.+. ..++++. ++|+.. .....+. ..|....+++.++.+ .+|+||-.-
T Consensus 324 ~~~IGfIG-lG~MG~~mA~~L~-~~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIG-LGAMGFGMASHLL-KSNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIMV 388 (1378)
T ss_pred CCeEEEEC-chHHHHHHHHHHH-HCCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEec
Confidence 57899999 6999999999887 4577765 566431 1222232 234555778888885 789888654
Q ss_pred -ChHhHHHHHH------HHHHcCCCeEEeCCCCCHHHHHHHHHHhhh--cCceEEEccCchHHHH
Q 025154 115 -DASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAPTLSIGSI 170 (257)
Q Consensus 115 -~p~~~~~~~~------~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~--~gipvl~spNfSlGvn 170 (257)
.|+.+.+.+. ..+..|. +|+-++..+++..+++.+.+++ .|+..+-+| .|=|..
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP-VsGg~~ 451 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP-VSGGVK 451 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc-CCCChh
Confidence 3565555441 1223444 4455555667777788777777 777777766 444443
No 156
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.47 E-value=0.031 Score=54.86 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=68.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-CCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~-~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
+|+++| .|.||+.+++.+.. .+++|+ ++|+.. .....+..... ..++..+++++++.+.+ .++|+||-.-.
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~-~G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMAD-HGFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK 72 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHh-cCCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence 489999 69999999999875 577765 566531 11222221100 01255567887776421 25898776654
Q ss_pred h-HhHHHHH---HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 116 A-STVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 116 p-~~~~~~~---~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+ +.+.+.+ ..+++.|.-+|-++|....+..+..++ .++.|+. ++..-.|=|.
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~-fvdapVsGG~ 128 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGIL-FVGSGVSGGE 128 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCE-EEcCCCCCCH
Confidence 4 3344433 334455665665666554544444444 4444555 4444444454
No 157
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.47 E-value=0.021 Score=52.35 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=43.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-------hcCCCC--------CCeeeecCHHHHHh
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-------CDMEQP--------LEIPVMSDLTMVLG 99 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~-------~g~~~~--------~gv~v~~dl~~~l~ 99 (257)
+.||+|+|+ |.||..++..+.. .+++++. +|... .....+ .+...+ ..+..++|+++++.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 358999995 9999999998874 5777664 56421 011100 010000 01345667777764
Q ss_pred ccccCCCccEEEEcCChH
Q 025154 100 SISQSKARAVVIDFTDAS 117 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT~p~ 117 (257)
++|+||....++
T Consensus 79 ------~aDlVi~av~~~ 90 (311)
T PRK06130 79 ------GADLVIEAVPEK 90 (311)
T ss_pred ------cCCEEEEeccCc
Confidence 689988776554
No 158
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.45 E-value=0.015 Score=56.73 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=76.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-----------CeeeecCHHHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-----------EIPVMSDLTMVL 98 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-----------gv~v~~dl~~~l 98 (257)
..||+|.| .|.+|+.+++.+. ..+.+||++.|+. ..|-|..++....... +.. +.+.++++
T Consensus 232 g~rVaIqG-fGnVG~~~A~~L~-~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~ 308 (445)
T PRK09414 232 GKRVVVSG-SGNVAIYAIEKAQ-QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW 308 (445)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence 47999999 5999999999876 5789999998842 3366665443211000 111 12445555
Q ss_pred hccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 99 ~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
. .++||+|-++..... .+++....+++..+|++-. + .+++..+.| .++ .|++.|-+.
T Consensus 309 ~-----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L---~~r---GI~~vPD~l 368 (445)
T PRK09414 309 S-----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF---LEA---GVLFAPGKA 368 (445)
T ss_pred c-----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH---HHC---CcEEECchh
Confidence 4 489999998865444 5677776677999999876 2 455443333 233 466667654
No 159
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.43 E-value=0.034 Score=45.94 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=74.5
Q ss_pred ceEEEEcCCCh---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
-+|+|+|++-+ -+-.+.+.+. +.|+++..+ .+...| .++ +|-++|.++.++-+ +.|+|.-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV-NP~~~~---~ei------LG~k~y~sL~dIpe------~IDiVdv 79 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV-NPKLAG---EEI------LGEKVYPSLADIPE------PIDIVDV 79 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHH-HCCCEEEee-Ccccch---HHh------cCchhhhcHHhCCC------CCcEEEE
Confidence 47999999864 5556777655 678998864 342222 344 35678999999874 8999988
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCc
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 157 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gi 157 (257)
|-.|+.+.+.++.+++.+..+|=.--|...++ ..+.++++|.
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~e---a~~~~~~aG~ 121 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEE---AAEKARDAGL 121 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEEEecCcCCHH---HHHHHHHhCc
Confidence 99999999999999999999887666765544 3444555554
No 160
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.42 E-value=0.023 Score=52.46 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=28.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
||||.|.|++|-+|+.+++.+.+..+.++.+..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 679999999999999999998866678888754
No 161
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.36 E-value=0.02 Score=52.53 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=63.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID 112 (257)
.-+|+|+|+ |+||+.+++.+.. -++++. ++++.. ....... ..+... ++++++.+. ++|+||.
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~-~G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVin 215 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSA-LGARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVIN 215 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEEE
Confidence 358999995 9999999998875 467755 555431 1111111 112221 346677774 7999997
Q ss_pred cCChHhHH-HHHHHHHHcCCCeE-EeC-CCCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 113 FTDASTVY-DNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 113 FT~p~~~~-~~~~~a~~~Gi~vV-iGT-TG~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
.+ |.... ......++.+.-+| +++ +|-++ + ++|++.|+..+++||.==
T Consensus 216 t~-P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 216 TI-PALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPGLPG 266 (287)
T ss_pred CC-ChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCCCCc
Confidence 55 44332 22222233332222 222 34432 3 567888999999886643
No 162
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.35 E-value=0.053 Score=47.36 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=53.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc----CCCCCCe--ee-ecCHHHHHhccccCCCcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD----MEQPLEI--PV-MSDLTMVLGSISQSKARA 108 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g----~~~~~gv--~v-~~dl~~~l~~~~~~~~~D 108 (257)
|||+|+|++|.||+.+++.+.+ .+.++.. +++.. .....+.. .....++ .+ ..+..+.+. .+|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~-~G~~V~v-~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~------~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK-AGNKIII-GSRDL--EKAEEAAAKALEELGHGGSDIKVTGADNAEAAK------RAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-CCCEEEE-EEcCH--HHHHHHHHHHHhhccccCCCceEEEeChHHHHh------cCC
Confidence 6899998569999999998875 4677653 45421 11111110 0001121 12 235556664 789
Q ss_pred EEEEcCChHhHHHHHHHHHH--cCCCeEEe-CCCCCH
Q 025154 109 VVIDFTDASTVYDNVKQATA--FGMRSVVY-VPHIQL 142 (257)
Q Consensus 109 VvIDFT~p~~~~~~~~~a~~--~Gi~vViG-TTG~s~ 142 (257)
+||-...+....+.+..... .+ .+|+- +-|++.
T Consensus 71 vVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~ 106 (219)
T TIGR01915 71 VVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLAS 106 (219)
T ss_pred EEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCcee
Confidence 99977777767666554432 24 44544 446653
No 163
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=96.35 E-value=0.05 Score=49.14 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=59.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCCCCCCeee-----
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPV----- 90 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g~-----~~g~~~~~gv~v----- 90 (257)
+|+|+|+ |.+|+-.+++++. .++.=.-.+|.. ..|+.--+ +..+.....|..
T Consensus 32 ~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 32 HVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred cEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 7999996 9999999998874 465544556621 11221111 111111122322
Q ss_pred -ecCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEE
Q 025154 91 -MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 91 -~~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vVi 135 (257)
-+++++++. .++|-|||... -..-.+++.+|.++++|+|.
T Consensus 110 t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 110 TEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred CHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence 246677776 48999999974 45557889999999999884
No 164
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.27 E-value=0.044 Score=51.49 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=58.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
.+|+|+| +|.||+.+++.+. +.+++++....+.. +.. ..+ ...|+.+. +++++++ .+|+|+-...
T Consensus 18 ktIgIIG-~GsmG~AlA~~L~-~sG~~Vvv~~r~~~--~s~-~~A---~~~G~~~~-s~~eaa~------~ADVVvLaVP 82 (330)
T PRK05479 18 KKVAIIG-YGSQGHAHALNLR-DSGVDVVVGLREGS--KSW-KKA---EADGFEVL-TVAEAAK------WADVIMILLP 82 (330)
T ss_pred CEEEEEe-eHHHHHHHHHHHH-HCCCEEEEEECCch--hhH-HHH---HHCCCeeC-CHHHHHh------cCCEEEEcCC
Confidence 5899999 5999999999886 56788775544321 111 111 12355444 7888885 7999997777
Q ss_pred hHhHHHHH-HHHH---HcCCCeEEeCCCCCHHH
Q 025154 116 ASTVYDNV-KQAT---AFGMRSVVYVPHIQLET 144 (257)
Q Consensus 116 p~~~~~~~-~~a~---~~Gi~vViGTTG~s~e~ 144 (257)
|....+.+ .... +.|. +|+=..|++-..
T Consensus 83 d~~~~~V~~~~I~~~Lk~g~-iL~~a~G~~i~~ 114 (330)
T PRK05479 83 DEVQAEVYEEEIEPNLKEGA-ALAFAHGFNIHF 114 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCC-EEEECCCCChhh
Confidence 66665554 2222 2233 455567887644
No 165
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=96.26 E-value=0.1 Score=51.05 Aligned_cols=119 Identities=12% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC---cch----------------hhhhc-CCC-CCCeeee
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDI----------------GMVCD-MEQ-PLEIPVM 91 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~----------------g~~~g-~~~-~~gv~v~ 91 (257)
.+.||+|.|+||-+|+..++.+.+.++ +++++........ ..+ .++-. ... ..+..++
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl 135 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEII 135 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence 357999999999999999998887655 8898876532110 000 00000 000 0012232
Q ss_pred ---cCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHH----HHHHHHhhhcCceEE
Q 025154 92 ---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCL 160 (257)
Q Consensus 92 ---~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~----~~L~~~a~~~gipvl 160 (257)
+++.++.+. .++|+||-.-.--+-+.-...|+++|+.|... +.|-+ +.|.++++++|+.++
T Consensus 136 ~G~egl~~la~~----~evDiVV~AIvG~aGL~pTl~AIkaGK~VALA----NKESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 136 PGEEGIVEVARH----PEAVTVVTGIVGCAGLKPTVAAIEAGKDIALA----NKETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred ECHHHHHHHHcC----CCCCEEEEeCccccchHHHHHHHHCCCcEEEe----cHHHHHhhHHHHHHHHHHcCCeEe
Confidence 244455542 56898887665544555558889999998873 33322 245666666665554
No 166
>PRK06091 membrane protein FdrA; Validated
Probab=96.23 E-value=0.025 Score=56.42 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=63.8
Q ss_pred CeeeecCHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154 87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 87 gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf 165 (257)
.++.+.++.++++++ ..+|++|-+..+..+.+.++.|++.|+++||=+.||..+..++|.++|+++|+ .++.||-
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Gl-rvmGPNC 175 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGL-LVMGPDC 175 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCC-EEECCCC
Confidence 456677888877542 45799998999999999999999999999999999998888899999999886 5579998
No 167
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=96.23 E-value=0.062 Score=48.66 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=79.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-----ecCHHHHHhccccCCCcc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSDLTMVLGSISQSKARA 108 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-----~~dl~~~l~~~~~~~~~D 108 (257)
++++|.|.|.| .=++.+++.+...+...++...... |.+..+- .....+ ..-+.+.+.+ .++|
T Consensus 1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~--g~~l~~~-----~~~~~~~G~l~~e~l~~~l~e----~~i~ 68 (257)
T COG2099 1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY--GAKLAEQ-----IGPVRVGGFLGAEGLAAFLRE----EGID 68 (257)
T ss_pred CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc--cccchhc-----cCCeeecCcCCHHHHHHHHHH----cCCC
Confidence 46899999974 7789999998877755444333211 2221110 111111 1233444544 7899
Q ss_pred EEEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH--------HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154 109 VVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 109 VvIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~--------e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a 176 (257)
.+||.|||-+. ...++.|-+.|+|.+ ..=++|.. ++.+++-+++++.+-.||. .+|.+=+..|.
T Consensus 69 llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~ 144 (257)
T COG2099 69 LLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFV 144 (257)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHh
Confidence 99999999766 456688899999988 44555543 3455666666766556774 67876555554
No 168
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.23 E-value=0.021 Score=52.57 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=55.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT- 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT- 114 (257)
|||.|.|++|.+|+.+.+.+. ++.++++.-.+. .++.-.+.+.+++.+ .+||+||...
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA 59 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA 59 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence 569999999999999999765 778887643221 223334456677765 5799999852
Q ss_pred ---------ChH--------hHHHHHHHHHHcCCCeEE
Q 025154 115 ---------DAS--------TVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 115 ---------~p~--------~~~~~~~~a~~~Gi~vVi 135 (257)
.|+ .....++.|.+.|.++|=
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh 97 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH 97 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE
Confidence 233 234567888899999884
No 169
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.23 E-value=0.034 Score=50.29 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=54.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCC--C-------CCCeeeecCHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDME--Q-------PLEIPVMSDLTM 96 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~g~~~g~~--~-------~~gv~v~~dl~~ 96 (257)
+.||+|+|+ |.||..++..++.. +++++. +|.+..-.+ ...+...+ . ..++.+++|+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 458999995 99999999988754 777764 563210000 00111000 0 013455677765
Q ss_pred HHhccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHH
Q 025154 97 VLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET 144 (257)
Q Consensus 97 ~l~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~ 144 (257)
+. ++|+||....++ .++.-+..++..+..+++-|.|++..+
T Consensus 80 -~~------~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 80 -LK------DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred -hc------cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 43 789999876532 222333333334444545555766543
No 170
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=96.23 E-value=0.012 Score=55.28 Aligned_cols=97 Identities=25% Similarity=0.212 Sum_probs=59.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC------CC-Ceeee--c
Q 025154 37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ------PL-EIPVM--S 92 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~~~g~~~------~~-gv~v~--~ 92 (257)
||||.| .||+||.+.+++.+. +++++|++-|.. -.|+--+++.-.++ .. .+.++ .
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 799999 599999999998776 589999987721 01111111100000 01 12232 1
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEeC
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViGT 137 (257)
+++++-= ++.++|+|++.|-.....+.+..+++.|...|+=+
T Consensus 80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 4443211 01368999988888888888888999997666543
No 171
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.22 E-value=0.04 Score=48.35 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||+|+|+ |.||..+++.+.. .++.=+.++|.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~-~Gvg~i~lvD~ 60 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALAR-SGVGNLKLVDF 60 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence 458999996 9999999999875 46665556774
No 172
>PRK08328 hypothetical protein; Provisional
Probab=96.19 E-value=0.049 Score=48.34 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=25.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.-||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~-~Gvg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAA-AGVGRILLIDE 59 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 358999996 9999999998875 46655556773
No 173
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.18 E-value=0.024 Score=53.96 Aligned_cols=119 Identities=9% Similarity=0.038 Sum_probs=69.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEE---EEEecCCCCcchhhhhcCCCCCCeeeecCHHH--HHhccccCCCccEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV 110 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVv 110 (257)
+||||+||||-.|+.+++.+.+++++.+. ..-.....|+.. .+.+ ....+. ++++ .+ .++|++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v~-~~~~~~~~------~~vDiv 68 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTLQ-DAFDIDAL------KALDII 68 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceEE-cCcccccc------cCCCEE
Confidence 48999999999999999988877787633 222222223221 1111 112222 2211 34 268988
Q ss_pred EEcCChHhHHHHHHHHHHcCCC-eEEeCCC--------------CCHHHHHHHHHHhhhcCceEEEccCchHHHH
Q 025154 111 IDFTDASTVYDNVKQATAFGMR-SVVYVPH--------------IQLETVSALSAFCDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~-vViGTTG--------------~s~e~~~~L~~~a~~~gipvl~spNfSlGvn 170 (257)
+-+...+.+.++...+.++|.+ +||=-++ .+++ .|... .+.|+.-+..||=|.=.-
T Consensus 69 ffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~---~i~~~-~~~gi~~ianPNCst~~l 139 (366)
T TIGR01745 69 ITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQD---VITDG-LNNGIRTFVGGNCTVSLM 139 (366)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHH---HHHhH-HhCCcCeEECcCHHHHHH
Confidence 7334556667888889999975 4554442 3444 34332 244453377899776543
No 174
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.18 E-value=0.0099 Score=55.33 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=62.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
-+|+|+|+ |.+|+.+++.+....+++.+.++++.. ..+.+++.. ....+ +..++|+++++. ++|+||-
T Consensus 128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~ 198 (325)
T PRK08618 128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT 198 (325)
T ss_pred cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence 48999995 999999998887677899999998641 112222210 01123 455889999885 7999997
Q ss_pred cCChHhHHHHHHHHHHcCCCeE-EeCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSV-VYVP 138 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vV-iGTT 138 (257)
.|. ....-.- .+++.|++|. ||+.
T Consensus 199 aT~-s~~p~i~-~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 199 VTN-AKTPVFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred ccC-CCCcchH-HhcCCCcEEEecCCC
Confidence 763 3343334 7789999985 5653
No 175
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.12 Score=50.74 Aligned_cols=137 Identities=21% Similarity=0.173 Sum_probs=77.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvIDF 113 (257)
-||+|+| .|+.|...++.+. ..+.++++ .|... .....+. +.|+.+. .+..+.+. .+|+||.-
T Consensus 13 ~~v~V~G-~G~sG~aa~~~L~-~~G~~v~~-~D~~~--~~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S 77 (488)
T PRK03369 13 APVLVAG-AGVTGRAVLAALT-RFGARPTV-CDDDP--DALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS 77 (488)
T ss_pred CeEEEEc-CCHHHHHHHHHHH-HCCCEEEE-EcCCH--HHHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence 4899999 5999999998665 56788775 77431 1111111 2355443 22334443 68988876
Q ss_pred C-ChHhHHHHHHHHHHcCCCe---------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 114 T-DASTVYDNVKQATAFGMRS---------------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 114 T-~p~~~~~~~~~a~~~Gi~v---------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+ .|.. .+.++.|.++|+|+ +||-||-+- --...|..+-++.|.+.....| +|+
T Consensus 78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~ 154 (488)
T PRK03369 78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS 154 (488)
T ss_pred CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence 5 2322 23455555544333 345554321 1223456666666667777778 677
Q ss_pred HHHHHHHHHhcCCCCCeEEEeccCCC
Q 025154 170 ILLQQAAISASFHYKNVEIVESRPNA 195 (257)
Q Consensus 170 nll~~~a~~l~~~~~DiEIiE~HH~~ 195 (257)
.++..+ . ...|+-++|+-..+
T Consensus 155 p~~~~~----~-~~~~~~VlE~ss~q 175 (488)
T PRK03369 155 PVLDVL----D-EPAELLAVELSSFQ 175 (488)
T ss_pred HHHHhc----c-CCCCEEEEECChHH
Confidence 764422 2 35678888864433
No 176
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.03 E-value=0.062 Score=47.39 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=60.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
..||+|+|+ |..|..+++.+.. .++.-..++|..... .+... ++...+..|-+-.+-+.+.+.+ ..+++=|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~----~np~~~i~ 94 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRA----INPDVEIE 94 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHH----hCCCCEEE
Confidence 458999996 9999999999874 577666677743110 01110 0000000111101111122221 24554444
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCc
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNf 165 (257)
.-.-....+++...+ .+..+|+.++. +.+....|.++|.+.++|++.+...
T Consensus 95 ~~~~~i~~~~~~~~~-~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~ 145 (228)
T cd00757 95 AYNERLDAENAEELI-AGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVL 145 (228)
T ss_pred EecceeCHHHHHHHH-hCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 322111122222222 34667776665 3344556777777777777766443
No 177
>PRK07411 hypothetical protein; Validated
Probab=96.02 E-value=0.053 Score=51.93 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=60.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCCCCCCeeeec-
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVMS- 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g---------~~~g~~~~~gv~v~~- 92 (257)
..||+|+|+ |.+|..+++.+. ..++.=..++|.. ..+ .|+| .+..+.....+..+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 458999996 999999999887 4577766777732 111 1111 111111111222221
Q ss_pred -----CHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC-CC
Q 025154 93 -----DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HI 140 (257)
Q Consensus 93 -----dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT-G~ 140 (257)
+..+.+. ++|+|||.+. ++.-.-.-..|.+.++|+|.|.. ||
T Consensus 116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 2334553 7999999985 44445566888999999998754 44
No 178
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.01 E-value=0.068 Score=51.00 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
...||+|+|.+|.||+.+++.+.+..+.++.+ +|+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcC
Confidence 34699999966999999999998655778765 664
No 179
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.96 E-value=0.032 Score=52.18 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=57.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-++|+|+| .|+||+.+++.+...-++++.+ +|+.. .... ...+...+++++++. .+|+|+-..
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~-~d~~~-~~~~--------~~~~~~~~~l~ell~------~aDvIvl~l 208 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKGYGSDVVA-YDPFP-NAKA--------ATYVDYKDTIEEAVE------GADIVTLHM 208 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCEEEE-ECCCc-cHhH--------HhhccccCCHHHHHH------hCCEEEEeC
Confidence 35899999 5999999999885445777764 66431 1111 112334568999985 799988654
Q ss_pred ChHhHHHHH-----HHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154 115 DASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (257)
Q Consensus 115 ~p~~~~~~~-----~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~ 154 (257)
.......++ ...++.|.-+|--++|.-.++. .|.++.++
T Consensus 209 P~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~-aL~~aL~~ 252 (332)
T PRK08605 209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK-ALLDALDN 252 (332)
T ss_pred CCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH-HHHHHHHh
Confidence 211111111 2234555544444446544333 34444444
No 180
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.96 E-value=0.098 Score=46.73 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH---HHHHhccccCCC-ccEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL---TMVLGSISQSKA-RAVVI 111 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl---~~~l~~~~~~~~-~DVvI 111 (257)
+|.|+|++|.+|+.+++.+.+ .++++.+...+...... .+. ..+.. +.|. .+++.....-.. +|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~~----~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSAG----PNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCccccC----CCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 589999999999999998875 57887766543210000 010 01111 2333 344410000013 78776
Q ss_pred EcCC-----hHhHHHHHHHHHHcCCCeEEeCC--CC--CHHHHHHHHHHhhhc-CceEE
Q 025154 112 DFTD-----ASTVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL 160 (257)
Q Consensus 112 DFT~-----p~~~~~~~~~a~~~Gi~vViGTT--G~--s~e~~~~L~~~a~~~-gipvl 160 (257)
..+. .+.....+..|.+.|+.-|+-++ +- .......++++.++. |++..
T Consensus 73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~t 131 (285)
T TIGR03649 73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYT 131 (285)
T ss_pred EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEE
Confidence 5543 13455677888899976444332 21 111222344555553 66654
No 181
>PLN00016 RNA-binding protein; Provisional
Probab=95.94 E-value=0.067 Score=50.28 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCceEEEE----cCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCee-eecCHHH---HHh
Q 025154 33 QSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIP-VMSDLTM---VLG 99 (257)
Q Consensus 33 ~~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----g~~~g~~~~~gv~-v~~dl~~---~l~ 99 (257)
..++||.|+ |++|.+|+.+++.+.+ .++++.++.......... ..+... ...++. +..|+.+ ++.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSEL-SSAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHh-hhcCceEEEecHHHHHhhhc
Confidence 445789999 9999999999998875 478888766432110000 000000 012333 2345544 332
Q ss_pred ccccCCCccEEEEcCC--hHhHHHHHHHHHHcCCC-eE
Q 025154 100 SISQSKARAVVIDFTD--ASTVYDNVKQATAFGMR-SV 134 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT~--p~~~~~~~~~a~~~Gi~-vV 134 (257)
...+|+||++.. .+.....+.+|.+.|+. +|
T Consensus 128 ----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 128 ----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred ----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 247999999863 44456777888888874 55
No 182
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.90 E-value=0.041 Score=50.89 Aligned_cols=80 Identities=24% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvI 111 (257)
...||+|+|+ |.||+.+++.+.. .+..-+.++++.. ..+.+++. .++.. .++++.+.+. .+|+||
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi 243 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI 243 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence 3579999996 9999999998875 4555566677531 11222221 22222 2345556653 689988
Q ss_pred EcCChHhHHHHHHHH
Q 025154 112 DFTDASTVYDNVKQA 126 (257)
Q Consensus 112 DFT~p~~~~~~~~~a 126 (257)
..|......+.+..+
T Consensus 244 ~at~~~~~~~~~~~~ 258 (311)
T cd05213 244 SATGAPHYAKIVERA 258 (311)
T ss_pred ECCCCCchHHHHHHH
Confidence 887544443334433
No 183
>PLN00106 malate dehydrogenase
Probab=95.89 E-value=0.045 Score=51.27 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred ccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 20 KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.++|.-.|-..-...+.||+|+|++|++|..++-.+....-..-.-.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 3 EASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred chhhhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 34455557655555667999999889999999998875544433335664
No 184
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.83 E-value=0.074 Score=50.65 Aligned_cols=96 Identities=20% Similarity=0.307 Sum_probs=59.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh---------hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG---------MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g---------~~~g~~~~~gv~v~-- 91 (257)
..||.|+|+ |.+|..+++.+.. .++.=+.++|.. ... .|+| .+..+.....+..+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~-~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 358999996 9999999999874 566555567632 111 1111 01111111222222
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
.+.++++. ++|+|||.+. .+.-.-.-..|.++++|+|.|..
T Consensus 119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 23455664 7999999985 55555566889999999998754
No 185
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.83 E-value=0.072 Score=50.36 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=58.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~~~g~~~~~gv~v~-- 91 (257)
..||+|+|+ |..|..+++.+. ..++.=..++|... .. .|+| .+..+.....+..+
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 358999996 999999999887 56776667777321 11 1111 01111111122221
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 137 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGT 137 (257)
++..+++. ++|+|||.+. ++.-.-.-..|.++++|+|.|-
T Consensus 106 ~i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 106 RLTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 12334553 7999999984 4444556688999999999764
No 186
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=95.80 E-value=0.052 Score=51.44 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=63.7
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.+++|||+| .|.||+..++.+. +.|..|.. .|+.. -.+.+ ..+|..-++++.++.+ ..+|||+-.
T Consensus 51 ~tl~IaIIG-fGnmGqflAetli-~aGh~li~-hsRsd----yssaa---~~yg~~~ft~lhdlce-----rhpDvvLlc 115 (480)
T KOG2380|consen 51 ATLVIAIIG-FGNMGQFLAETLI-DAGHGLIC-HSRSD----YSSAA---EKYGSAKFTLLHDLCE-----RHPDVVLLC 115 (480)
T ss_pred cceEEEEEe-cCcHHHHHHHHHH-hcCceeEe-cCcch----hHHHH---HHhcccccccHHHHHh-----cCCCEEEEE
Confidence 457999999 5999999999887 45666653 33321 12222 2567777888888887 489999988
Q ss_pred CChHhHHHHHH---HH-HHcCCCeEEeCCCCCHHHHHHHHHH
Q 025154 114 TDASTVYDNVK---QA-TAFGMRSVVYVPHIQLETVSALSAF 151 (257)
Q Consensus 114 T~p~~~~~~~~---~a-~~~Gi~vViGTTG~s~e~~~~L~~~ 151 (257)
|........++ .. ++.|. +|+|.|.-.+-+.+.++++
T Consensus 116 tsilsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY 156 (480)
T KOG2380|consen 116 TSILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY 156 (480)
T ss_pred ehhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence 75544443333 33 34443 4556665544444444443
No 187
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.79 E-value=0.076 Score=50.83 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=59.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCC-------cchh----h-----hhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVG-------EDIG----M-----VCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g-------~d~g----~-----~~g~~~~~gv~v~-- 91 (257)
..||.|+|+ |..|..+++.+. ..++.=+.++|.. ..+ .|+| + +..+.....+..+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 358999996 999999999887 4566666677732 111 1121 1 1111101122211
Q ss_pred ----cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++..+++. ++|+|||.+ ++..-...-+.|.++++|+|.|..
T Consensus 120 ~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 120 RLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred cCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12344553 799999998 455556667889999999998754
No 188
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.75 E-value=0.047 Score=53.50 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhc----CCcEEEEEEe
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAID 68 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd 68 (257)
..+.||+|.| .||+||.+.+.+.+. ++++|+++.+
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~ 163 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVV 163 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEec
Confidence 4477999999 599999999998766 5899999975
No 189
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.73 E-value=0.054 Score=48.12 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=49.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p 116 (257)
||.|+|++|.+|+.+++.+.+ .+.++.++. +.. . ++.-.+++.++++. .++|+||++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-~g~~v~~~~-r~~-----~---------d~~~~~~~~~~~~~----~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-EGRVVVALT-SSQ-----L---------DLTDPEALERLLRA----IRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-cCCEEEEeC-Ccc-----c---------CCCCHHHHHHHHHh----CCCCEEEECCcc
Confidence 689999999999999998875 578877643 311 0 11112344555653 357999987632
Q ss_pred ----------H--------hHHHHHHHHHHcCCCeEE
Q 025154 117 ----------S--------TVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 117 ----------~--------~~~~~~~~a~~~Gi~vVi 135 (257)
+ .....+..|.+.+..+|.
T Consensus 61 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~ 97 (287)
T TIGR01214 61 TDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVH 97 (287)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1 123345566677777763
No 190
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.73 E-value=0.037 Score=48.24 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv 64 (257)
|||+|+|++|+||+.+++.+. +.|+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~-~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILD-DNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHH-hCCCEEE
Confidence 689999999999999999775 5588764
No 191
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.72 E-value=0.11 Score=46.93 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=53.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC---CCCC--CeeeecCHHHHHhccccCCCcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM---EQPL--EIPVMSDLTMVLGSISQSKARA 108 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~---~~~~--gv~v~~dl~~~l~~~~~~~~~D 108 (257)
|||+|+|+ |.||..++..+.+ .+.++..+ ++. +.....+. |. ..+. .+...++++++ . ++|
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~-~g~~V~~~-~r~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~------~~d 68 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQ-AGHDVTLV-ARR--GAHLDALNENGLRLEDGEITVPVLAADDPAEL-G------PQD 68 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCeEEEE-ECC--hHHHHHHHHcCCcccCCceeecccCCCChhHc-C------CCC
Confidence 58999996 9999999998774 46676543 331 11111111 10 0000 01224455544 3 799
Q ss_pred EEEEcCChHhHHHHHHHHH---HcCCCeEEeCCCCCH
Q 025154 109 VVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL 142 (257)
Q Consensus 109 VvIDFT~p~~~~~~~~~a~---~~Gi~vViGTTG~s~ 142 (257)
++|-.+.+..+.+.+.... ..+..+|+-..|+..
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~ 105 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH 105 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence 9998876555554444433 344567776778864
No 192
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.076 Score=49.76 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=75.5
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-----c-chhhhhcCC---------------CCCCe------e
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----E-DIGMVCDME---------------QPLEI------P 89 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~-d~g~~~g~~---------------~~~gv------~ 89 (257)
-|.|+|| |.+|+-++..+. ..+++=.-++|..... + ....+...+ .-..+ .
T Consensus 76 yVVVVG~-GgVGSwv~nmL~-RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~ 153 (430)
T KOG2018|consen 76 YVVVVGA-GGVGSWVANMLL-RSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLW 153 (430)
T ss_pred EEEEEec-CchhHHHHHHHH-HhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhc
Confidence 4889996 999999999887 4688877777732100 0 001111000 00011 1
Q ss_pred eecCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCCC----------------------CCHHHHH
Q 025154 90 VMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPH----------------------IQLETVS 146 (257)
Q Consensus 90 v~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTTG----------------------~s~e~~~ 146 (257)
-.++-++++- .+||-|||+- +-+.-.+.+.+|..+|++|+..| | ++..-..
T Consensus 154 ~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~-GaaaksDPTrv~v~Dis~t~~DPlsR~vRr 227 (430)
T KOG2018|consen 154 TSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST-GAAAKSDPTRVNVADISETEEDPLSRSVRR 227 (430)
T ss_pred CCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc-CccccCCCceeehhhccccccCcHHHHHHH
Confidence 1245566664 4799999986 56777899999999999987644 3 1222344
Q ss_pred HHHHHhhhcCceEEEccC
Q 025154 147 ALSAFCDKASMGCLIAPT 164 (257)
Q Consensus 147 ~L~~~a~~~gipvl~spN 164 (257)
+|+..--..||||++|.-
T Consensus 228 rLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 228 RLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred HHHHhccccCCceEEecC
Confidence 666666678999997643
No 193
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.051 Score=49.38 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=54.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh--------hh---cCC-------CCCCeeeecCHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM--------VC---DME-------QPLEIPVMSDLT 95 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~--------~~---g~~-------~~~gv~v~~dl~ 95 (257)
+.||+|+|+ |.||..++..++. .+.++. ++|....- ..+.+ .. ... ....+.+++|++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAF-HGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 358999995 9999999988764 467754 45532100 00000 00 000 012455678898
Q ss_pred HHHhccccCCCccEEEEcCC--hHhHHHH---HHHHHHcCCCeEEeCCCCCHHH
Q 025154 96 MVLGSISQSKARAVVIDFTD--ASTVYDN---VKQATAFGMRSVVYVPHIQLET 144 (257)
Q Consensus 96 ~~l~~~~~~~~~DVvIDFT~--p~~~~~~---~~~a~~~Gi~vViGTTG~s~e~ 144 (257)
++++ ++|+||.... .+...+. +..++..+..+++-|++++..+
T Consensus 80 ~a~~------~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 80 EAVK------DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred HHhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 8774 7999997653 2222233 2333333443435555666543
No 194
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.71 E-value=0.26 Score=48.13 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=76.5
Q ss_pred CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec--CHHHHHhccccCCC
Q 025154 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA 106 (257)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~ 106 (257)
..|.-.+.||.|+| .|+.|+.+++.+. ..+.++ -+.|.... ...++. .+.|+.++. +..+.++ +
T Consensus 9 ~~~~~~~~~v~v~G-~G~sG~a~a~~L~-~~G~~V-~~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~ 74 (473)
T PRK00141 9 ALPQELSGRVLVAG-AGVSGRGIAAMLS-ELGCDV-VVADDNET--ARHKLI---EVTGVADISTAEASDQLD------S 74 (473)
T ss_pred hcccccCCeEEEEc-cCHHHHHHHHHHH-HCCCEE-EEECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------C
Confidence 44555667999999 5999999999876 556754 45774321 112221 134666642 2233343 6
Q ss_pred ccEEEEcCC--hHhHHHHHHHHHHcCCCe---------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEE
Q 025154 107 RAVVIDFTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQL--ETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 107 ~DVvIDFT~--p~~~~~~~~~a~~~Gi~v---------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~ 161 (257)
+|+|| .|+ |... +.+..|.++|+++ +||-||-+- --...|..+-++.|..+..
T Consensus 75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 152 (473)
T PRK00141 75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA 152 (473)
T ss_pred CCEEE-eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 88777 442 2222 3344555555532 456665321 1123455555555666667
Q ss_pred ccCchHHHHHHHHHHHHhcCCCCCeEEEecc
Q 025154 162 APTLSIGSILLQQAAISASFHYKNVEIVESR 192 (257)
Q Consensus 162 spNfSlGvnll~~~a~~l~~~~~DiEIiE~H 192 (257)
..|+.+... ..+. .....|+-++|+-
T Consensus 153 ~Gnig~p~~--~~l~---~~~~~~~~V~E~s 178 (473)
T PRK00141 153 VGNIGVPVS--AALV---AQPRIDVLVAELS 178 (473)
T ss_pred eccCChhHH--HHHh---cCCCCCEEEEecC
Confidence 778543332 1111 1234577778853
No 195
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.70 E-value=0.038 Score=50.91 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVvID 112 (257)
..||+|+|+ |++|+.+++.+.. -+.++. ++++.. ....... ..|... ++++.+.+. ++|+||.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~-~Ga~V~-v~~r~~--~~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI~ 216 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKA-LGANVT-VGARKS--AHLARIT----EMGLSPFHLSELAEEVG------KIDIIFN 216 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH----HcCCeeecHHHHHHHhC------CCCEEEE
Confidence 469999995 9999999998875 467655 455431 1111111 233332 346666664 7999998
Q ss_pred cCChHhHHHHHHHHHHcCCCeE-EeCC-CCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 113 FTDASTVYDNVKQATAFGMRSV-VYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vV-iGTT-G~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
.+.+....+.....++.+.-+| +++. |-++ + +++++.|+.+++.+|..=++
T Consensus 217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV 269 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence 7654333333333344444333 3332 3332 2 35788899999999988666
No 196
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.68 E-value=0.23 Score=51.01 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=61.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.||+|+| .|.||..+++.+.... ..+ +-++|+.. ....... +.|+. ...+++++++ ++|+||.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~-V~~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil 69 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLARE-VVAVDRRA--KSLELAV----SLGVIDRGEEDLAEAVS------GADVIVL 69 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCE-EEEEECCh--hHHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence 4899999 5999999999887542 135 44467532 1111111 22332 3456777774 7899998
Q ss_pred cCChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHh
Q 025154 113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFC 152 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a 152 (257)
.+.|....+.+....+. .-.+|+-.++....-.+.+++..
T Consensus 70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~ 111 (735)
T PRK14806 70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF 111 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence 88777666666554432 22356545555544455565553
No 197
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.68 E-value=0.053 Score=48.79 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=74.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------------CeeeecCHHHH
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------------EIPVMSDLTMV 97 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-------------gv~v~~dl~~~ 97 (257)
.||+|.|. |++|+..++.+.+ .+..++++.|+. ..|.|..++....... +...+++-+++
T Consensus 33 ~~v~IqGf-G~VG~~~a~~l~~-~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 33 KRVAIQGF-GNVGSHAARFLAE-LGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp CEEEEEES-SHHHHHHHHHHHH-TTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHG
T ss_pred CEEEEECC-CHHHHHHHHHHHH-cCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccc
Confidence 69999995 9999999998875 499999997742 2355655544210011 11222222367
Q ss_pred HhccccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
+. .++||+|=+..+... .+++...++.|..+|++-. .++++..+.| ++. +|++.|.|..
T Consensus 111 l~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L----~~r--GI~viPD~~a 172 (244)
T PF00208_consen 111 LS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL----RER--GILVIPDFLA 172 (244)
T ss_dssp GT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH----HHT--T-EEE-HHHH
T ss_pred cc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH----HHC--CCEEEcchhh
Confidence 76 489999988765554 5666657788999999876 3566544323 333 5677777653
No 198
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.68 E-value=0.036 Score=47.32 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=48.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hhcCC---------CCCCeeeecCHHHHH
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDME---------QPLEIPVMSDLTMVL 98 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~d~g~----~~g~~---------~~~gv~v~~dl~~~l 98 (257)
||+|+|+ |.||+.++..++. .++++. .+|..... +.+.. +...+ ....+.+++|++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~-~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFAR-AGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHH-TTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred CEEEEcC-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence 7999996 9999999987775 488876 45532000 00000 00000 011345677877765
Q ss_pred hccccCCCccEEEEcCChH-----hHHHHHHHHHHcCCCeEEeCCCCCHHH
Q 025154 99 GSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET 144 (257)
Q Consensus 99 ~~~~~~~~~DVvIDFT~p~-----~~~~~~~~a~~~Gi~vViGTTG~s~e~ 144 (257)
++|+||+...-+ ..+..+...+.....+.+-|.+++..+
T Consensus 78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 588888886321 122333333334444445455666543
No 199
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.68 E-value=0.12 Score=47.22 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=55.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---------hhhhhcCCC---------CCCeeeecCHHHH
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---------IGMVCDMEQ---------PLEIPVMSDLTMV 97 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---------~g~~~g~~~---------~~gv~v~~dl~~~ 97 (257)
-||+|+|+ |.||+.++..++ ..+++++ ++|......+ ...+...+. ...+.+++|+++
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a-~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCA-RAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD- 81 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHH-hCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-
Confidence 48999996 999999998776 4588866 4553210000 011111100 012346778854
Q ss_pred HhccccCCCccEEEEcCCh-----HhHHHHHHHHH-HcCCCeEEeCCCCCHHHH
Q 025154 98 LGSISQSKARAVVIDFTDA-----STVYDNVKQAT-AFGMRSVVYVPHIQLETV 145 (257)
Q Consensus 98 l~~~~~~~~~DVvIDFT~p-----~~~~~~~~~a~-~~Gi~vViGTTG~s~e~~ 145 (257)
++ ++|+||+.-.- ...+..+..++ ..+..++.-||++...++
T Consensus 82 ~~------~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 82 FA------DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred hC------CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 43 78999987531 12233344444 455666666667665443
No 200
>PLN02427 UDP-apiose/xylose synthase
Probab=95.67 E-value=0.054 Score=50.86 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
+..+|||.|+|++|-+|+.+++.+.+..+.+++++.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 345689999999999999999999876567877653
No 201
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.66 E-value=0.095 Score=45.48 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=25.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.-||.|+|+ |.+|..+++.+.. .++.=+-++|.
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~-~Gv~~i~lvD~ 53 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAG-AGVGTIVIVDD 53 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEecC
Confidence 458999995 9999999998875 46644456774
No 202
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.057 Score=53.96 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCcc
Q 025154 31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARA 108 (257)
Q Consensus 31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~D 108 (257)
+.....|+.|+|| |.-|..+++.+...+.+..||.+|... ...|. .-.|++|+.. +.+++++ ...|
T Consensus 112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~------~~~g~-~i~Gv~V~g~~~i~~~v~~----~~~~ 179 (588)
T COG1086 112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDP------DLTGM-KIRGVPVLGRIEIERVVEE----LGIQ 179 (588)
T ss_pred cccCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCCh------hhcCC-EEeceeeechhHHHHHHHH----cCCc
Confidence 5556689999997 999999999999999999999999541 11222 1247788654 4555554 5666
Q ss_pred EEEEc---CChHhHHHHHHHHHHcCCCeEE
Q 025154 109 VVIDF---TDASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 109 VvIDF---T~p~~~~~~~~~a~~~Gi~vVi 135 (257)
-++-+ -.++...+.++.|.+.|+.+=+
T Consensus 180 ~iiiAips~~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 180 LILIAIPSASQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred eEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 43333 2466777888888888866543
No 203
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.64 E-value=0.14 Score=47.22 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C---------CCCeeeecCHHHHHhc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q---------PLEIPVMSDLTMVLGS 100 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~~--~---------~~gv~v~~dl~~~l~~ 100 (257)
.||||+|+|+ |.||..++..+.+ .++++.. +++.. ....+. +.. . +..+..+++++ .+
T Consensus 1 ~~mkI~IiG~-G~mG~~~A~~L~~-~G~~V~~-~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 71 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAA-AGADVTL-IGRAR---IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-AL-- 71 (341)
T ss_pred CCceEEEECC-CHHHHHHHHHHHh-cCCcEEE-EecHH---HHHHHHhcCceeecCCCcceecccceeEeccChh-hc--
Confidence 3689999995 9999999998875 4677665 44321 111111 000 0 00122344553 33
Q ss_pred cccCCCccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCHHHHHHHHHHh
Q 025154 101 ISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC 152 (257)
Q Consensus 101 ~~~~~~~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~e~~~~L~~~a 152 (257)
..+|+||-.+.+....+.+... +..+..+|.-+.|+... +.+++..
T Consensus 72 ----~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--~~l~~~~ 120 (341)
T PRK08229 72 ----ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--DVLRAAL 120 (341)
T ss_pred ----cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--HHHHHhC
Confidence 3799999876555444444333 33444455566788743 2455443
No 204
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.62 E-value=0.1 Score=47.40 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=74.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcC----CC-------CC-CeeeecCH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDM----EQ-------PL-EIPVMSDL 94 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~g~----~~-------~~-gv~v~~dl 94 (257)
..||+|.| .|.+|+..++.+. +.+.+++++.|+. ..|-|..++ ... .. .+ +.. +-+.
T Consensus 38 g~~vaIqG-fGnVG~~~a~~L~-e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~ 114 (254)
T cd05313 38 GKRVAISG-SGNVAQYAAEKLL-ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG 114 (254)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence 46999999 5999999999876 5689999999942 335554433 100 00 00 122 2255
Q ss_pred HHHHhccccCCCccEEEEcCChHh-HHHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 95 TMVLGSISQSKARAVVIDFTDAST-VYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT~p~~-~~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
++++. .++||+|=+..-.. ..+++....+++..+|++-. + ++++..+.| .++ .|++.|-|..
T Consensus 115 ~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L---~~r---GI~vvPD~la 179 (254)
T cd05313 115 KKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF---RQA---GVLFAPGKAA 179 (254)
T ss_pred cchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH---HHC---CcEEECchhh
Confidence 66776 48999997654333 35677766677999999876 2 455333333 233 4666676643
No 205
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.59 E-value=0.13 Score=48.48 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=60.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchh-----------hhhcCCCCCCeeee
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIG-----------MVCDMEQPLEIPVM 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g-----------~~~g~~~~~gv~v~ 91 (257)
..||.|+|+ |.+|..+++.++. .++.=+.++|.... ..|++ .+..+.....+..+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVR-AGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 458999996 9999999998874 47765667774210 01111 01111111112111
Q ss_pred ------cCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ------SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ------~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++.++++. ++|+|||.+ +++.-+..-..|.++++|+|.|..
T Consensus 102 ~~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 102 VQDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred eccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 13345553 789999998 466666677889999999998653
No 206
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.57 E-value=0.12 Score=49.03 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=57.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~-- 91 (257)
..||+|+|+ |..|..+++.+.. .++.=+-++|... .|+.-.+ +..+.....+..+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 358999996 9999999998874 5665555666420 1111111 1111001112111
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
+++++++. ++|+|||.|. ++.-...-..|.++++|+|.+.+
T Consensus 213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12344553 6899999984 45545566888999999987743
No 207
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.56 E-value=0.089 Score=45.68 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=60.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
++|+|+|. |+||+.+++.+. ..+.+++ ++|... ....++. ..++....+ .++++. .++||++=.+.
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~-~~G~~Vv-v~D~~~--~~~~~~~---~~~g~~~v~-~~~l~~-----~~~Dv~vp~A~ 94 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLL-EEGAKLI-VADINE--EAVARAA---ELFGATVVA-PEEIYS-----VDADVFAPCAL 94 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEcCCH--HHHHHHH---HHcCCEEEc-chhhcc-----ccCCEEEeccc
Confidence 68999995 999999999887 4688998 677531 1122221 122333333 355554 37999884443
Q ss_pred hH-hHHHHHHHHHHcCCCeEEeCC-C-CC-HHHHHHHHHHhhhcCceEEEccCc
Q 025154 116 AS-TVYDNVKQATAFGMRSVVYVP-H-IQ-LETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 116 p~-~~~~~~~~a~~~Gi~vViGTT-G-~s-~e~~~~L~~~a~~~gipvl~spNf 165 (257)
-. ...+++ .+.+.++|++-. + ++ ++..+.| ++. .++|.|-|
T Consensus 95 ~~~I~~~~~---~~l~~~~v~~~AN~~~~~~~~~~~L----~~~--Gi~~~Pd~ 139 (200)
T cd01075 95 GGVINDDTI---PQLKAKAIAGAANNQLADPRHGQML----HER--GILYAPDY 139 (200)
T ss_pred ccccCHHHH---HHcCCCEEEECCcCccCCHhHHHHH----HHC--CCEEeCce
Confidence 22 223333 355678888765 2 44 3332333 443 45555644
No 208
>PLN02778 3,5-epimerase/4-reductase
Probab=95.54 E-value=0.11 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEE
Q 025154 30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVA 64 (257)
Q Consensus 30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv 64 (257)
.|....|||.|.|++|-+|+.+++.+.+ .+.+++
T Consensus 4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~-~g~~V~ 37 (298)
T PLN02778 4 TAGSATLKFLIYGKTGWIGGLLGKLCQE-QGIDFH 37 (298)
T ss_pred CCCCCCCeEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 3444568999999999999999998875 467765
No 209
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.54 E-value=0.077 Score=48.23 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=52.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||.|.|++|-+|+.+++.+.+. + ++++ ++.... .+ ..++.-.+.++++++. .++|+||.+..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~-----~~Dl~d~~~~~~~~~~----~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DY-----CGDFSNPEGVAETVRK----IRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----cc-----cCCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence 58999999999999999988754 4 4543 443210 00 0111112234455542 36899998741
Q ss_pred ----------hHh--------HHHHHHHHHHcCCCeEEeCC
Q 025154 116 ----------AST--------VYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 116 ----------p~~--------~~~~~~~a~~~Gi~vViGTT 138 (257)
|+. +...++.|.+.|+++|.-.|
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 221 23466778888988886544
No 210
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.49 E-value=0.21 Score=47.00 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=58.1
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--eecCHHHHHhccccCCCccEEEEcC
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
||+|+| +|.||..+++.+.. .++++. +++............ ..++. .++++++++. ++|+||-.+
T Consensus 2 ~I~iIG-~GliG~siA~~L~~-~G~~v~-i~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~------~aDlVilav 68 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKA-AGPDVF-IIGYDPSAAQLARAL----GFGVIDELAADLQRAAA------EADLIVLAV 68 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHh-cCCCeE-EEEeCCCHHHHHHHh----cCCCCcccccCHHHHhc------CCCEEEEeC
Confidence 799999 59999999998874 444443 333221111111111 12221 2456777764 799999888
Q ss_pred ChHhHHHHHHHHHH--cC-CCeEEeCCCCCHHHHHHHHHH
Q 025154 115 DASTVYDNVKQATA--FG-MRSVVYVPHIQLETVSALSAF 151 (257)
Q Consensus 115 ~p~~~~~~~~~a~~--~G-i~vViGTTG~s~e~~~~L~~~ 151 (257)
.|....+.+..... .. -.+|+-.++...+-.+.+++.
T Consensus 69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 88777766665553 12 234543445554445555554
No 211
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.49 E-value=0.072 Score=42.86 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.||+|+|+ |..|..+++.+.. .++.=.-++|.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDD 34 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEES
T ss_pred CEEEEECc-CHHHHHHHHHHHH-hCCCceeecCC
Confidence 58999996 9999999999875 46665667884
No 212
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.48 E-value=0.029 Score=46.03 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC---CCC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
|||+|+|++|..|+.++-.+...+-..=+..+|.. ..| .|+...... ....+.+..+..+.+ .++|+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~~~~~------~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP-LPSPVRITSGDYEAL------KDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG-STEEEEEEESSGGGG------TTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh-ccccccccccccccc------ccccEE
Confidence 69999998899999999988766443324467753 111 122222111 112344444444455 379988
Q ss_pred EEcC-ChHhH-HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcC
Q 025154 111 IDFT-DASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF 181 (257)
Q Consensus 111 IDFT-~p~~~-~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~ 181 (257)
|-.. .|..- .+. ...++.+.+++ .+-.+.|.+.+.+ .-+++.+|= ++++.++++...+
T Consensus 74 vitag~~~~~g~sR-~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtNP---vd~~t~~~~~~s~ 133 (141)
T PF00056_consen 74 VITAGVPRKPGMSR-LDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTNP---VDVMTYVAQKYSG 133 (141)
T ss_dssp EETTSTSSSTTSSH-HHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SSS---HHHHHHHHHHHHT
T ss_pred EEeccccccccccH-HHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCCc---HHHHHHHHHHhhC
Confidence 8443 11110 011 11123333333 3445677777755 567777776 6677676666553
No 213
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.43 E-value=0.091 Score=47.41 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=53.9
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccC---CCccEEEEcC
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS---KARAVVIDFT 114 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~---~~~DVvIDFT 114 (257)
|.|+|++|-+|+.+++.+.+ .+.+++.++++...+.....+. ..++.-..+.+++++.+.++ .++|+||.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~-~g~~~v~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALND-KGITDILVVDNLKDGTKFVNLV----DLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHh-CCCceEEEecCCCcchHHHhhh----hhhhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999998875 4787888887532121110111 11111111223333210000 1589999974
Q ss_pred C--------h--------HhHHHHHHHHHHcCCCeEEeCC
Q 025154 115 D--------A--------STVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 115 ~--------p--------~~~~~~~~~a~~~Gi~vViGTT 138 (257)
. + ..+...++.|.++++++|.-.|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS 116 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 1 1 1133566778888888775433
No 214
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.41 E-value=0.16 Score=46.75 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=43.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-Ccch--------hhhhcCCC---------CCCeeeecCHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDI--------GMVCDMEQ---------PLEIPVMSDLTM 96 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~--------g~~~g~~~---------~~gv~v~~dl~~ 96 (257)
++||+|+| .|.||..++..+.. .+++++ ++|+... ...+ ..+...+. ...+.++.|+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~-~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFAR-AGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHH-CCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence 35899999 59999999998775 477765 4664310 0000 00111000 012456788888
Q ss_pred HHhccccCCCccEEEEcCC
Q 025154 97 VLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 97 ~l~~~~~~~~~DVvIDFT~ 115 (257)
++. ++|++|....
T Consensus 79 a~~------~ad~Vi~avp 91 (308)
T PRK06129 79 AVA------DADYVQESAP 91 (308)
T ss_pred hhC------CCCEEEECCc
Confidence 874 7999886653
No 215
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.38 E-value=0.16 Score=45.51 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.-||+|+|+ |..|..+++.++. .++.=..++|.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence 459999996 9999999999875 56655556763
No 216
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.51 Score=45.49 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=74.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCeeee-c--CHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVv 110 (257)
+.||.|+|. |+.|...++.+....+ +++. +.|....-.....+ .. |+.++ . +. +.+. ++|+|
T Consensus 7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l----~~-g~~~~~g~~~~-~~~~------~~d~v 72 (438)
T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQL----PE-DVELHSGGWNL-EWLL------EADLV 72 (438)
T ss_pred CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHh----hc-CCEEEeCCCCh-HHhc------cCCEE
Confidence 468999995 9999999998887655 7665 47743211111112 12 56552 2 33 3343 68977
Q ss_pred EEcC-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154 111 IDFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (257)
Q Consensus 111 IDFT-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~ 173 (257)
|--+ .|. ..+.+..|.++|+|++ ||-||-+- --...|..+-++.|..+.+..| +|+.++.
T Consensus 73 V~SpgI~~-~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gn--iG~~~~~ 149 (438)
T PRK04663 73 VTNPGIAL-ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGN--IGVPALD 149 (438)
T ss_pred EECCCCCC-CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcc--cCHHHHh
Confidence 6433 132 2344555556665544 45555321 1123455555666666777788 4665432
Q ss_pred HHHHHhcCCCCCeEEEecc
Q 025154 174 QAAISASFHYKNVEIVESR 192 (257)
Q Consensus 174 ~~a~~l~~~~~DiEIiE~H 192 (257)
. +. ...|+-|+|.-
T Consensus 150 ~----~~-~~~~~~V~E~s 163 (438)
T PRK04663 150 L----LE-QDAELYVLELS 163 (438)
T ss_pred h----hc-CCCCEEEEEcC
Confidence 1 12 23577778853
No 217
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.37 E-value=0.2 Score=47.58 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.+.||+|+|++|.||+.+++.+.. .++++. ++|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~-~G~~V~-~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL-SGYQVR-ILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH-CCCeEE-EeCC
Confidence 457999999679999999998875 466644 3443
No 218
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=95.37 E-value=0.2 Score=44.47 Aligned_cols=149 Identities=10% Similarity=0.062 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC-ChHhHHH
Q 025154 44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD 121 (257)
Q Consensus 44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~ 121 (257)
.|+-|.++...+.+.+++. .+..++-+. ...++ .+++++.+.++ .++|++|..+ +|+.+++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~ef-----------Id~pee~Lp~i---~~~Dl~I~y~lHPDl~~~ 67 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPEF-----------IDDPEEYLPKI---PEADLLIAYGLHPDLTYE 67 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCc---ccccc-----------ccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence 5899999999998887776 344555321 11111 24455555543 5799999987 8999999
Q ss_pred HHHHHHHcCCCeEEeCCCCC-HHHHHHHHHHhhhcCceEEEccCch-H---HHHHHHHHHHHhcCCCCCeEEEec----c
Q 025154 122 NVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLS-I---GSILLQQAAISASFHYKNVEIVES----R 192 (257)
Q Consensus 122 ~~~~a~~~Gi~vViGTTG~s-~e~~~~L~~~a~~~gipvl~spNfS-l---Gvnll~~~a~~l~~~~~DiEIiE~----H 192 (257)
..+.|.+.|+..||....-. ..-.+.|++.+++.|+-+.+.-.|- | |--.+.+|++.+.+.-..|++ +- .
T Consensus 68 l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~ei~v-~~~~I~~ 146 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKPKVEIEV-ENGKIKD 146 (217)
T ss_pred HHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCceEEEEe-cCCcEEE
Confidence 99999999999887543211 2345578888899887777655442 1 223478888887654333332 31 1
Q ss_pred CCCCCCCCCccHHHHHHh
Q 025154 193 PNARVRYMTRTLISMQVC 210 (257)
Q Consensus 193 H~~K~DapSGTa~~l~~~ 210 (257)
-+=+.+||=|+.-.+|..
T Consensus 147 V~VlR~aPCGsT~~vAk~ 164 (217)
T PF02593_consen 147 VKVLRSAPCGSTWFVAKR 164 (217)
T ss_pred EEEEecCCCccHHHHHHH
Confidence 122334899988888753
No 219
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.36 E-value=0.14 Score=44.40 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||.|+|+ |.+|..+++.+. ..++.=+.++|.
T Consensus 19 ~s~VlviG~-gglGsevak~L~-~~GVg~i~lvD~ 51 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLV-LAGIDSITIVDH 51 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHH-HcCCCEEEEEEC
Confidence 358999996 889999999987 467776667874
No 220
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.35 E-value=0.023 Score=53.59 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=29.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
+||||.| .||+||.+.|++.+.+++++|++=|
T Consensus 3 ~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGING-FGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEEC-CChHHHHHHHHHHhcCCcEEEEecC
Confidence 7999999 5999999999988788999999876
No 221
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=95.33 E-value=0.025 Score=53.73 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc----CCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~ 69 (257)
++||||+| .||+||.+.|++.+. +++++|++-|+
T Consensus 3 ~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 3 PIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred ceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 47999999 599999999987764 68999999873
No 222
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=95.32 E-value=0.081 Score=49.91 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhc---------------------CCcEEEEEEe--cCCCCcchhhhhcCC------
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAID--SHSVGEDIGMVCDME------ 83 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd--~~~~g~d~g~~~g~~------ 83 (257)
..|+||+|+| -|.--+.+++-+..- .+.++|+.+| .++.|+|+.+..-..
T Consensus 3 ~~~vrv~iiG-~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 3 TTMVRVAIIG-VGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred cceEEEEEEe-ccchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence 3589999999 599888888776432 2568888888 346677765543110
Q ss_pred -----CCCCeee---------ecCHHHHHhc--------------cccCCCccEEEEcC---ChHhHHHHHHHHHHcCCC
Q 025154 84 -----QPLEIPV---------MSDLTMVLGS--------------ISQSKARAVVIDFT---DASTVYDNVKQATAFGMR 132 (257)
Q Consensus 84 -----~~~gv~v---------~~dl~~~l~~--------------~~~~~~~DVvIDFT---~p~~~~~~~~~a~~~Gi~ 132 (257)
...|+.+ ...+.+.++. +......|+++.|. ..++++.++..+++.|++
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence 0112211 0112222220 00112345555554 256778889999999999
Q ss_pred eEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 133 SVVYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 133 vViGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
.|=+++-+...+ ..+.+.++++|+|++
T Consensus 162 fvN~~P~~iA~d-P~~~~~fee~g~pi~ 188 (362)
T COG1260 162 FVNAIPVFIASD-PAWVELFEEKGLPIA 188 (362)
T ss_pred eecccCccccCC-HHHHHHHHHcCCcee
Confidence 999988654322 357888888888877
No 223
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.11 Score=47.18 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=24.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la~-~G~~V~-l~d~ 35 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCAL-AGYDVL-LNDV 35 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-CCCeEE-EEeC
Confidence 58999995 9999999998764 577766 4664
No 224
>PRK05865 hypothetical protein; Provisional
Probab=95.26 E-value=0.14 Score=53.82 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=61.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||.|.|++|.+|+.+++.+.+ .+.++++...+.. ......+. . -..++.-.++++++++ ++|+||.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~-~G~~Vv~l~R~~~-~~~~~~v~-~-v~gDL~D~~~l~~al~------~vD~VVHlAa 70 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLS-QGHEVVGIARHRP-DSWPSSAD-F-IAADIRDATAVESAMT------GADVVAHCAW 70 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCch-hhcccCce-E-EEeeCCCHHHHHHHHh------CCCEEEECCC
Confidence 5899999999999999998875 5788876543211 00000000 0 0001111123444553 6999999863
Q ss_pred h---------HhHHHHHHHHHHcCCC-eEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 116 A---------STVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 116 p---------~~~~~~~~~a~~~Gi~-vViGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
. ..+...++.|.+.|+. +|.-.|.. ....++++++.+++++
T Consensus 71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~----K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH----QPRVEQMLADCGLEWV 121 (854)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH----HHHHHHHHHHcCCCEE
Confidence 2 2344556777778864 44333322 2334555555666554
No 225
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.22 E-value=0.17 Score=49.54 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=58.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV 109 (257)
.-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. . ..++++..+.++ ++.+ .++|-
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~----~-------g~~VpvlG~~~dL~~~v~~----~~Ide 206 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP----G-------GVSNDWAGNLQQLVEDAKA----GKIHN 206 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc----c-------cCCCCcCCCHHHHHHHHHh----CCCCE
Confidence 357999995 999999999998765 6899999985321 0 123444555444 4443 57886
Q ss_pred EEEcC---ChHhHHHHHHHHHHcCCCeEEe
Q 025154 110 VIDFT---DASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 110 vIDFT---~p~~~~~~~~~a~~~Gi~vViG 136 (257)
||-.. ..+...+.+..|.+.++++.+-
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLI 236 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEe
Confidence 66432 2345567788899999987653
No 226
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.4 Score=45.98 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=74.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCeee-e-cCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-M-SDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----g~~~g~~~~~gv~v-~-~dl~~~l~~~~~~~~~DV 109 (257)
.+|.|+|+ |++|..+++.+. ..+.++++ +|.... ... .++. +.++.+ + +..++.. ..+|+
T Consensus 6 k~v~iiG~-g~~G~~~A~~l~-~~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~~d~ 71 (450)
T PRK14106 6 KKVLVVGA-GVSGLALAKFLK-KLGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFL------EGVDL 71 (450)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHh------hcCCE
Confidence 58999996 889999999877 56788764 564310 111 2221 224433 2 2233333 36999
Q ss_pred EEEcCChHhHHHHHHHHHHcCCCe--------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154 110 VIDFTDASTVYDNVKQATAFGMRS--------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~~Gi~v--------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~ 173 (257)
||--+......+.+..|.++|+++ |||-||-+- -..+.|..+-+..|-++.+..| +|+.+..
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~~ 149 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLID 149 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHHH
Confidence 887664333344555555555543 556665321 1223455555555556666666 6665542
Q ss_pred HHHHHhcCCCCCeEEEec
Q 025154 174 QAAISASFHYKNVEIVES 191 (257)
Q Consensus 174 ~~a~~l~~~~~DiEIiE~ 191 (257)
... .. ...|+-++|+
T Consensus 150 ~~~-~~--~~~~~~v~E~ 164 (450)
T PRK14106 150 AVE-EY--GEDDIIVAEV 164 (450)
T ss_pred HHh-cC--CCCCEEEEEc
Confidence 222 11 2356667774
No 227
>PLN03139 formate dehydrogenase; Provisional
Probab=95.19 E-value=0.15 Score=48.88 Aligned_cols=65 Identities=20% Similarity=0.093 Sum_probs=45.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|+|+| +|+||+.+++.+. .-++++.+ +|+.. .+.. .. ...++...+++++++. .+|||+-..
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~-afG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~l 263 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLK-PFNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVINT 263 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHH-HCCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEeC
Confidence 35899999 5999999999886 46899865 67531 1111 11 1345555679999995 699877543
No 228
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.14 E-value=0.28 Score=46.31 Aligned_cols=91 Identities=22% Similarity=0.171 Sum_probs=58.1
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---cCHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~DVvIDF 113 (257)
+|+|+|+ |.+|...++.+.. -+.+++++-.+...-+++.++ |. ...+. .+.-+.+. ..+|++||+
T Consensus 169 ~V~I~G~-GGlGh~avQ~Aka-~ga~Via~~~~~~K~e~a~~l-GA----d~~i~~~~~~~~~~~~-----~~~d~ii~t 236 (339)
T COG1064 169 WVAVVGA-GGLGHMAVQYAKA-MGAEVIAITRSEEKLELAKKL-GA----DHVINSSDSDALEAVK-----EIADAIIDT 236 (339)
T ss_pred EEEEECC-cHHHHHHHHHHHH-cCCeEEEEeCChHHHHHHHHh-CC----cEEEEcCCchhhHHhH-----hhCcEEEEC
Confidence 7999996 9999999987664 458988755432111122221 10 11222 12223332 139999999
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
..+......++.+...|.-+++|-++
T Consensus 237 v~~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 237 VGPATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CChhhHHHHHHHHhcCCEEEEECCCC
Confidence 88666677777777888888888875
No 229
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.11 E-value=0.28 Score=42.52 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=27.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (257)
.||.|+|+ |..|..+++.+. ..++.=+.++|..
T Consensus 22 s~VlIiG~-gglG~evak~La-~~GVg~i~lvD~d 54 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLV-LSGIGSLTILDDR 54 (197)
T ss_pred CcEEEEcC-CHHHHHHHHHHH-HcCCCEEEEEECC
Confidence 58999996 899999999987 5678777788843
No 230
>PRK07574 formate dehydrogenase; Provisional
Probab=95.08 E-value=0.2 Score=48.05 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=43.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
++|+|+| +|+||+.+++.+. .-++++.+ +|+.....+ .. ...++..+.++++++. .+|||+-..
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~-~fG~~V~~-~dr~~~~~~---~~---~~~g~~~~~~l~ell~------~aDvV~l~l 256 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLK-PFDVKLHY-TDRHRLPEE---VE---QELGLTYHVSFDSLVS------VCDVVTIHC 256 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCCchh---hH---hhcCceecCCHHHHhh------cCCEEEEcC
Confidence 5899999 5999999999876 45788764 564321111 11 1235555678999995 799887554
No 231
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.08 E-value=0.29 Score=46.89 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|||+|+| .|.||..++..++ . ++++++ +|.
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~-G~~Vig-vD~ 30 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-Q-NHEVVA-LDI 30 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-h-CCcEEE-EEC
Confidence 5899999 5999999996655 3 788664 663
No 232
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.054 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=24.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-||+|+|+ |.||..++..+.. .++++. ++|.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~-~G~~V~-~~d~ 32 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAV-SGFQTT-LVDI 32 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-CCCcEE-EEeC
Confidence 37999995 9999999988764 477765 4564
No 233
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.097 Score=47.60 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=24.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-||+|+|+ |.||..++..++. .+++++ ++|.
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~-~G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFAR-TGYDVT-IVDV 34 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHh-cCCeEE-EEeC
Confidence 47999996 9999999988764 577765 4664
No 234
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.97 E-value=0.25 Score=40.36 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.5
Q ss_pred EEEEcCCChHHHHHHHHHHhcC-CcEEEEEEec
Q 025154 38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS 69 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~ 69 (257)
|+|.|+||-+|+...+.+.+.| .+++++....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 6899999999999999998877 6999998873
No 235
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.64 Score=44.56 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=77.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI 111 (257)
-+|.|+|+ |++|..+++.+. ..+.++++ .|.... . .....+. +.|+.++ .+..+++. ..+|+||
T Consensus 6 k~v~v~G~-g~~G~s~a~~l~-~~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV 73 (447)
T PRK02472 6 KKVLVLGL-AKSGYAAAKLLH-KLGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV 73 (447)
T ss_pred CEEEEEee-CHHHHHHHHHHH-HCCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence 37899996 889999988766 56888765 463211 1 1112221 3355443 33444443 1389877
Q ss_pred EcCC-hHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154 112 DFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (257)
Q Consensus 112 DFT~-p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~ 174 (257)
--.. |. ....+..|.++|+|++ ||-||-+- --...|..+-+..|.......| +|+.+..
T Consensus 74 ~s~gi~~-~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~- 149 (447)
T PRK02472 74 KNPGIPY-TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE- 149 (447)
T ss_pred ECCCCCC-CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-
Confidence 4331 22 2345666677777664 55555321 1233455555655666677777 4554432
Q ss_pred HHHHhcCCCCCeEEEeccCCC
Q 025154 175 AAISASFHYKNVEIVESRPNA 195 (257)
Q Consensus 175 ~a~~l~~~~~DiEIiE~HH~~ 195 (257)
+.... ...|+-|+|.-+.+
T Consensus 150 ~~~~~--~~~~~~V~E~ss~~ 168 (447)
T PRK02472 150 VAQKA--TADDTLVMELSSFQ 168 (447)
T ss_pred HHhcC--CCCCEEEEEcCchh
Confidence 11111 23578888875544
No 236
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.92 E-value=0.091 Score=49.11 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=42.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC------CcEEEEEEecC-----CCCcchhhhhcCC--CCCCeeeecCHHHHHhcc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVGEDIGMVCDME--QPLEIPVMSDLTMVLGSI 101 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~-----~~g~d~g~~~g~~--~~~gv~v~~dl~~~l~~~ 101 (257)
|+||+|+||+|..|+.++..+...+ +.+|+. +|.. ..|.. -++.... ....+.+..++.+.++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~~-~Dl~d~~~~~~~~~~~~~~~~~~l~-- 77 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGVV-MELQDCAFPLLKSVVATTDPEEAFK-- 77 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCcccccccee-eehhhccccccCCceecCCHHHHhC--
Confidence 6899999999999999999887643 236664 4532 11211 1111000 0113444567666664
Q ss_pred ccCCCccEEEEc
Q 025154 102 SQSKARAVVIDF 113 (257)
Q Consensus 102 ~~~~~~DVvIDF 113 (257)
++|+||..
T Consensus 78 ----~aDiVI~t 85 (325)
T cd01336 78 ----DVDVAILV 85 (325)
T ss_pred ----CCCEEEEe
Confidence 79988854
No 237
>PRK06046 alanine dehydrogenase; Validated
Probab=94.91 E-value=0.073 Score=49.57 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=60.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
.-+|+|+| +|.||+.+++.+...++++.+.++++.. .....+... .+..+ +.+++|+++++ . +|+|+
T Consensus 129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l------~-aDiVv 198 (326)
T PRK06046 129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC------D-CDILV 198 (326)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh------h-CCEEE
Confidence 35899999 5999999999998788999999998642 111111110 01223 55688999887 3 89999
Q ss_pred EcCChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154 112 DFTDASTVYDNV-KQATAFGMRSV-VYV 137 (257)
Q Consensus 112 DFT~p~~~~~~~-~~a~~~Gi~vV-iGT 137 (257)
-.|.... +.+ ...++.|.+|. ||.
T Consensus 199 ~aTps~~--P~~~~~~l~~g~hV~~iGs 224 (326)
T PRK06046 199 TTTPSRK--PVVKAEWIKEGTHINAIGA 224 (326)
T ss_pred EecCCCC--cEecHHHcCCCCEEEecCC
Confidence 8774322 222 23357888876 663
No 238
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.88 E-value=0.41 Score=36.55 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=51.7
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC--
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-- 114 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT-- 114 (257)
+|+|+|+--+|-..+-+.+. .-+.++... .+.. +..-. ...++..+ .++|+||-||
T Consensus 1 ~vliVGG~~~~~~~~~~~~~-~~G~~~~~h-g~~~-~~~~~-------------~~~l~~~i------~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILE-KYGGKLIHH-GRDG-GDEKK-------------ASRLPSKI------KKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHH-HcCCEEEEE-ecCC-CCccc-------------hhHHHHhc------CCCCEEEEEeCC
Confidence 58999933388888887665 567877765 2211 11000 01134455 3789888777
Q ss_pred -ChHhHHHHHHHHHHcCCCeEEeC-CCCC
Q 025154 115 -DASTVYDNVKQATAFGMRSVVYV-PHIQ 141 (257)
Q Consensus 115 -~p~~~~~~~~~a~~~Gi~vViGT-TG~s 141 (257)
+.......-+.|.++++|++.-- +|++
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 45666666777788888888765 5665
No 239
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.86 E-value=0.049 Score=44.18 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=44.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.-||.|+|+ |.||+.++..+... +++=+-++++.. ..+.+++.. . ....+.-++++.+.+. ++|+||.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI~ 81 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVIN 81 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEEE
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEEE
Confidence 358999996 99999999988755 777555676541 112222211 0 0112333667777775 7999998
Q ss_pred cCC
Q 025154 113 FTD 115 (257)
Q Consensus 113 FT~ 115 (257)
.|.
T Consensus 82 aT~ 84 (135)
T PF01488_consen 82 ATP 84 (135)
T ss_dssp -SS
T ss_pred ecC
Confidence 774
No 240
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.85 E-value=0.16 Score=46.23 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=25.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
+.||+|+|+ |.||..++..+.. .+++++ ++|.
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~-~G~~V~-~~d~ 35 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAA-AGMDVW-LLDS 35 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHh-cCCeEE-EEeC
Confidence 357999995 9999999998874 477776 4564
No 241
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=94.85 E-value=0.15 Score=49.38 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=54.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc--hhhhhcCCCCCCeee-ecC-HHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED--IGMVCDMEQPLEIPV-MSD-LTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d--~g~~~g~~~~~gv~v-~~d-l~~~l~~~~~~~~~DVv 110 (257)
.|||.|.|++|-+|+.+++.+.+ .+.++++ +|+...+.. ...+.+ ...+.+ ..| ++..+ .++|+|
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~-ldr~~~~~~~~~~~~~~---~~~~~~~~~Di~~~~~------~~~D~V 188 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIG-RGDEVIV-IDNFFTGRKENLVHLFG---NPRFELIRHDVVEPIL------LEVDQI 188 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHH-CCCEEEE-EeCCCCccHhHhhhhcc---CCceEEEECccccccc------cCCCEE
Confidence 47999999999999999998875 4788876 443211211 111111 112221 122 22333 368999
Q ss_pred EEcCC---h-------H--------hHHHHHHHHHHcCCCeEEeCC
Q 025154 111 IDFTD---A-------S--------TVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 111 IDFT~---p-------~--------~~~~~~~~a~~~Gi~vViGTT 138 (257)
|.+.. + . .+...++.|.++|+.+|.-.|
T Consensus 189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 99752 1 1 134566778888888775433
No 242
>PRK14852 hypothetical protein; Provisional
Probab=94.85 E-value=0.17 Score=53.67 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=57.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIG-----MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g-----~~~g~~~~~gv~v~-- 91 (257)
.-||+|+|+ |..|..++..++. .|+.=.-++|.. ..|+.-. .+..+.....|.++
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAr-aGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLAR-TGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHH-cCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 458999996 9999999998875 455444455521 1121111 11111111233333
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCCh---HhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~p---~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++.++.++ ++|+|||.+.. +.-......|.++|+|+|.+..
T Consensus 410 ~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 410 GVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred CCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 24555664 78999997642 3335566778999999997765
No 243
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.85 E-value=0.3 Score=45.53 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
.+.||+|+|+ |.||..++..++ ..++ + +..+|.
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la-~~gl~~-i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIV-LKNLGD-VVLFDI 38 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHH-hCCCCe-EEEEeC
Confidence 3468999996 999999998766 4554 6 667884
No 244
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.85 E-value=0.14 Score=51.83 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc
Q 025154 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA 108 (257)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D 108 (257)
..|...+|||.|+|++|-+|+.+++.+.+ .+.++...... . .|. +.+...+.+ .++|
T Consensus 374 ~~~~~~~mkiLVtGa~G~iG~~l~~~L~~-~g~~v~~~~~~-l--~d~---------------~~v~~~i~~----~~pd 430 (668)
T PLN02260 374 SSPGKPSLKFLIYGRTGWIGGLLGKLCEK-QGIAYEYGKGR-L--EDR---------------SSLLADIRN----VKPT 430 (668)
T ss_pred cCCCCCCceEEEECCCchHHHHHHHHHHh-CCCeEEeeccc-c--ccH---------------HHHHHHHHh----hCCC
Confidence 34445668999999999999999998864 46666311110 0 011 112333432 4789
Q ss_pred EEEEcCC-------------hH--------hHHHHHHHHHHcCCCeEEeCC
Q 025154 109 VVIDFTD-------------AS--------TVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 109 VvIDFT~-------------p~--------~~~~~~~~a~~~Gi~vViGTT 138 (257)
+||.+.. |+ .+...++.|.+.|+++|+-.|
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss 481 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFAT 481 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcc
Confidence 9998741 11 234567788888988876544
No 245
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.47 Score=43.57 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCeee--ecCH-HHHHhccccCCCccE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV 109 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~g~~~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV 109 (257)
.+++|+|+| .|.||+.+++.+.+ .+... +-..|......... ..+|+.- ..+. .+.. ..+|+
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~-~g~~v~i~g~d~~~~~~~~a------~~lgv~d~~~~~~~~~~~------~~aD~ 67 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKE-AGLVVRIIGRDRSAATLKAA------LELGVIDELTVAGLAEAA------AEADL 67 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHH-cCCeEEEEeecCcHHHHHHH------hhcCcccccccchhhhhc------ccCCE
Confidence 367999999 69999999998874 45544 33344221000001 1223322 1222 2222 36899
Q ss_pred EEEcCChHhHHHHHHHHHH-cCCC-eEEeCCCCCHHHHHHHHHHh
Q 025154 110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC 152 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~-~Gi~-vViGTTG~s~e~~~~L~~~a 152 (257)
||-.++..++.+.++.... .+.. +|+.+|..-..-.+.++++.
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 8866677777777776653 2222 55666666554455555554
No 246
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.83 E-value=0.17 Score=47.68 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|+|+| +|.||+.+++.+. .-+++++...++. .... .+ ...|+.+ .++++++. .+|+|+-..
T Consensus 17 KtVGIIG-~GsIG~amA~nL~-d~G~~ViV~~r~~---~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llL 79 (335)
T PRK13403 17 KTVAVIG-YGSQGHAQAQNLR-DSGVEVVVGVRPG---KSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLL 79 (335)
T ss_pred CEEEEEe-EcHHHHHHHHHHH-HCcCEEEEEECcc---hhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeC
Confidence 5799999 6999999999886 5789988655431 1111 11 1224444 38899885 799887543
No 247
>PRK07877 hypothetical protein; Provisional
Probab=94.82 E-value=0.18 Score=52.19 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=58.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecC---------------CCCcchh-----hhhcCCCCCCeeee--
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH---------------SVGEDIG-----MVCDMEQPLEIPVM-- 91 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~---------------~~g~d~g-----~~~g~~~~~gv~v~-- 91 (257)
.-||+|+|+ | .|..++..++. .++ -=.-++|.. ..|+.-. .+..+.....|..+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~Lar-aGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAA-EGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHH-ccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 468999997 8 99999988874 453 222344421 1111100 11111111233332
Q ss_pred ----cCHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154 92 ----SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 92 ----~dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
+++++++. ++|+|||.+. .+.-+..-..|.++|+|+|.|+.
T Consensus 184 ~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 184 GLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred cCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 25666664 7999999984 55556666889999999999884
No 248
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.82 E-value=0.34 Score=44.57 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=55.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (257)
+|||+|+|+ |.||..++..+.+ .+.++.-+.... ..|.......+......+.++++.++ . ..+|+
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~-~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLAR-AGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPCDW 75 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCCCE
Confidence 479999996 9999999988764 466666433221 00100000000000001223444443 2 36899
Q ss_pred EEEcCChHh---HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHH
Q 025154 110 VIDFTDAST---VYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151 (257)
Q Consensus 110 vIDFT~p~~---~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~ 151 (257)
+|-++.... +.+.+...+..+..+|.-.-|+..+ +.|.+.
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--e~l~~~ 118 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--EQLREI 118 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--HHHHHH
Confidence 887764333 3334444454555666656688643 345444
No 249
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.78 E-value=0.28 Score=45.27 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.||.|+|+ |.+|..+++.+. ..++.=+.++|..... .|.+. +.-..+..|-+-.....+-+.+ .+++|-|+.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e----LNp~V~V~~ 93 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE----LNPYVPVTV 93 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH----HCCCCEEEE
Confidence 58999996 999999999987 5688877888854211 11111 0000000010000011112222 367777765
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
.......+.+ .+..+|+-|+. +.+....|.++|+++++|++++.-..
T Consensus 94 ~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 94 STGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred EeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4322222222 23457776664 66777789999999999999875543
No 250
>PLN02477 glutamate dehydrogenase
Probab=94.77 E-value=0.19 Score=48.62 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=71.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCCCCC-------CeeeecCHHHHHhccc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDMEQPL-------EIPVMSDLTMVLGSIS 102 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~~~~-------gv~v~~dl~~~l~~~~ 102 (257)
..||+|.| .|.+|+.+++.+. +.+.+|+++.|+. ..|-|..++....... +... -+.++++.
T Consensus 206 g~~VaIqG-fGnVG~~~A~~L~-e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~--- 279 (410)
T PLN02477 206 GQTFVIQG-FGNVGSWAAQLIH-EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILV--- 279 (410)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCcccee---
Confidence 36999999 5999999999776 5789999999853 3466665553210000 1111 13455665
Q ss_pred cCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC--CCCHHHHHHHHHHhhhcCceEEEccCchH
Q 025154 103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI 167 (257)
Q Consensus 103 ~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT--G~s~e~~~~L~~~a~~~gipvl~spNfSl 167 (257)
.++||+|=+...... .+++. +.+..+|++-. .++++..+.| ++. .|+|.|-+..
T Consensus 280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~a 336 (410)
T PLN02477 280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIYA 336 (410)
T ss_pred --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence 489999966543322 33443 46899999876 3455544444 332 5666676654
No 251
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=94.76 E-value=0.45 Score=45.67 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=59.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC---cchhh----------------hhcCCC--CCCeeeec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG---EDIGM----------------VCDMEQ--PLEIPVMS 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g---~d~g~----------------~~g~~~--~~gv~v~~ 92 (257)
|.||+|.|+||-+|+..++.+...++ +++++........ +.+.+ +...-. ..++.++.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 46899999999999999998887654 9999987632100 00000 000000 00123333
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG 136 (257)
..+.+.+ +++..++|+|+-...--+...-...|++.|+.+-..
T Consensus 81 G~~~l~~-l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA 123 (389)
T TIGR00243 81 GEEGICE-MAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALA 123 (389)
T ss_pred CHHHHHH-HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence 2222221 222246788887666666666677778888887664
No 252
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=94.71 E-value=0.3 Score=47.15 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=59.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAVV 110 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DVv 110 (257)
-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ... ...|+++..+.++ ++.+ .++|.|
T Consensus 126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~--~~~------~i~g~pVlg~~~~l~~~i~~----~~id~V 192 (445)
T TIGR03025 126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPS--DRV------EVAGLPVLGKLDDLVELVRA----HRVDEV 192 (445)
T ss_pred CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcc--ccc------ccCCCcccCCHHHHHHHHHh----CCCCEE
Confidence 47999995 999999999987655 5899999985311 111 1246777665544 4443 578866
Q ss_pred EEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154 111 IDFT---DASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 111 IDFT---~p~~~~~~~~~a~~~Gi~vVi 135 (257)
|-.. ..+...+.+..|.+.|+++.+
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVRL 220 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEEE
Confidence 5332 234446788899999998775
No 253
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.68 E-value=0.32 Score=43.50 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
||.|+|+ |..|..+++.+.. .++.=.-++|
T Consensus 1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD 30 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVID 30 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEe
Confidence 6899996 9999999999874 5666666777
No 254
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.64 E-value=0.24 Score=48.24 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCc-----EEEEEEecC-----CCC-------cchh----hh-----hcCCCCCCeee
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH-----SVG-------EDIG----MV-----CDMEQPLEIPV 90 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~-----~~g-------~d~g----~~-----~g~~~~~gv~v 90 (257)
||.|+|| |..|..+++.++ ..|+ .-+-++|.. ..+ .|+| +. ..+.....+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLa-l~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFA-LMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEECC-CHHHHHHHHHHH-HcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 6899996 999999999887 4566 555567732 111 1211 11 11111112222
Q ss_pred ec-CH---------HHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEE-eCCCC
Q 025154 91 MS-DL---------TMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVV-YVPHI 140 (257)
Q Consensus 91 ~~-dl---------~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vVi-GTTG~ 140 (257)
+. .+ ++.+ .++|+||+.. ++++-...-..|..+++|+|- ||.|+
T Consensus 79 ~~~~v~~~~~~~~~~~f~------~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~ 134 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW------EKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT 134 (435)
T ss_pred EecccChhhhhhhhHHHh------cCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 21 11 1223 2689999987 566666777899999999994 44453
No 255
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.64 E-value=0.36 Score=45.35 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCeeeecCHHHHHhccccCC
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK 105 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~g~~~g~~~~-----~gv~v~~dl~~~l~~~~~~~ 105 (257)
.+++|.|.||+|-+|+.+++.+. ..|+++.|.+..+...+. +.++-+..++ .++.-+++++++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL-~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLL-SRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHH-hCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 56899999999999999999887 579999999875421111 1222221111 12233567888885
Q ss_pred CccEEEEcCCh-----------------HhHHHHHHHHHHcC--CCeEEe
Q 025154 106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVVY 136 (257)
Q Consensus 106 ~~DVvIDFT~p-----------------~~~~~~~~~a~~~G--i~vViG 136 (257)
++|.|+.-..| ..+...++.|.+.. +++|..
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~T 127 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYT 127 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEe
Confidence 79988765432 23456778888888 777753
No 256
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.63 E-value=0.31 Score=45.65 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.-||+|+|+ |-||+.++..++ ..+++++ ++|.
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a-~aG~~V~-l~D~ 38 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARAL-AHGLDVV-AWDP 38 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence 358999995 999999998776 5688887 4664
No 257
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.60 E-value=0.41 Score=44.71 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=56.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCeeee-cCH
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM-SDL 94 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----~~g~~~~~gv~v~-~dl 94 (257)
||.|+|+ |..|..+++.++ ..|+.-+.++|... .|+.-.+ +..+.....+..+ .++
T Consensus 1 kVlIVGa-GGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred CEEEECC-CHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 6999996 999999999987 45777777887321 1111011 1111001112111 111
Q ss_pred ------HHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEE-eCCCC
Q 025154 95 ------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVV-YVPHI 140 (257)
Q Consensus 95 ------~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vVi-GTTG~ 140 (257)
.+.+. ++|+||+... +++-...-..|.++++|+|- ||.|+
T Consensus 79 ~~~~~~~~f~~------~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~ 126 (312)
T cd01489 79 KDPDFNVEFFK------QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF 126 (312)
T ss_pred CCccchHHHHh------cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence 23443 6889888874 44445566788889999885 45564
No 258
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.59 E-value=0.27 Score=47.03 Aligned_cols=128 Identities=18% Similarity=0.287 Sum_probs=68.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-e---cCHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVvI 111 (257)
|||.|+|+ |++|+.+++.+.+ .+.+++ ++|... .....+.. ..++.+ + .+.+.+.+. .-.++|.+|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~~---~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQD---RLDVRTVVGNGSSPDVLREA--GAEDADLLI 70 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHHh---hcCEEEEEeCCCCHHHHHHc--CCCcCCEEE
Confidence 58999995 9999999998764 578887 555421 11111110 123322 1 122222110 003688888
Q ss_pred EcCChHhH-HHHHHHHHHc-CCCeEEeCCCCCHHHHHHHHHHh--hhcCceEEEccCchHHHHHHHHH
Q 025154 112 DFTDASTV-YDNVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQA 175 (257)
Q Consensus 112 DFT~p~~~-~~~~~~a~~~-Gi~vViGTTG~s~e~~~~L~~~a--~~~gipvl~spNfSlGvnll~~~ 175 (257)
-.+.-+.. ...+..+.+. +.+-++..+.- .+. ....++. ++.|+-.+++|..-.+-.++..+
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~-~~~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l 136 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIARVRN-PEY-AEYDKLFSKEALGIDLLISPELLVAREIARLI 136 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEEEECC-ccc-cchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence 66643333 3333445554 55544444321 111 1223333 55678889999988777665443
No 259
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=94.58 E-value=0.28 Score=47.37 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=60.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHH---HHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~---~l~~~~~~~~~DV 109 (257)
.-||.|+|+ |..|+.+++.+.+++ +++++|.+|.+.. ..+. ..|+++..+.++ .+++ .++|.
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~~------~~gvpVlg~~~dl~~~i~~----~~vd~ 194 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ARTG------VRGVPVLGKLDDLEELIRE----GEVDE 194 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--cccc------cCCCCccCCHHHHHHHHHh----cCCCE
Confidence 357999995 999999999987654 5899999984311 1111 246777655444 4443 67886
Q ss_pred EEEcC---ChHhHHHHHHHHHHcCCCeEE
Q 025154 110 VIDFT---DASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 110 vIDFT---~p~~~~~~~~~a~~~Gi~vVi 135 (257)
||... ..+...+.+..|.+.|+.+.+
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v 223 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRL 223 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEE
Confidence 66443 234456778889999998775
No 260
>PLN02206 UDP-glucuronate decarboxylase
Probab=94.53 E-value=0.26 Score=47.91 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhhcCCCCCCeee--ecCHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~g~~~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVv 110 (257)
.|||.|+|++|-+|+.+++.+.+ .+.++++. |....+. ....... ..++.. .+-.+..+. .+|+|
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~-~G~~V~~l-d~~~~~~~~~~~~~~~---~~~~~~i~~D~~~~~l~------~~D~V 187 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMA-RGDSVIVV-DNFFTGRKENVMHHFS---NPNFELIRHDVVEPILL------EVDQI 187 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHH-CcCEEEEE-eCCCccchhhhhhhcc---CCceEEEECCccChhhc------CCCEE
Confidence 47999999999999999999875 47888764 4221111 1111110 112221 122333442 68999
Q ss_pred EEcCC---h-------H--------hHHHHHHHHHHcCCCeEEeCC
Q 025154 111 IDFTD---A-------S--------TVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 111 IDFT~---p-------~--------~~~~~~~~a~~~Gi~vViGTT 138 (257)
|.+.. | . .+...+.+|.+.|+++|.-.|
T Consensus 188 iHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS 233 (442)
T PLN02206 188 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 233 (442)
T ss_pred EEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 98752 1 1 134567788888988874444
No 261
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=1.5 Score=42.11 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=71.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeec-C-HHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVvIDF 113 (257)
.||.|+|+ |++|..+++.+. ..+.++++ +|....-.....+... ..|+.++. . .+..+ .++|+||--
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~-~~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~------~~~d~vv~s 74 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLR-KNGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALD------NGFDILALS 74 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHH------hCCCEEEEC
Confidence 48999995 999999988766 56787664 6642111111122100 13555532 2 22333 268988843
Q ss_pred CC-hHhHHHHHHHHHHcCCCe-----------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154 114 TD-ASTVYDNVKQATAFGMRS-----------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (257)
Q Consensus 114 T~-p~~~~~~~~~a~~~Gi~v-----------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~ 173 (257)
+. |.. .+.++.|.++|+|+ +||-||-+- --...|..+-+..|.......|+ |+.++.
T Consensus 75 pgi~~~-~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~~ 151 (445)
T PRK04308 75 PGISER-QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVLE 151 (445)
T ss_pred CCCCCC-CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHHH
Confidence 31 222 23444455555543 244444321 11234555555555555666774 544333
Q ss_pred HHHHHhcCCCCCeEEEecc
Q 025154 174 QAAISASFHYKNVEIVESR 192 (257)
Q Consensus 174 ~~a~~l~~~~~DiEIiE~H 192 (257)
.+.... +...|+-|+|.=
T Consensus 152 ~~~~~~-~~~~d~~VlE~~ 169 (445)
T PRK04308 152 AELQRE-GKKADVWVLELS 169 (445)
T ss_pred HHHhhc-CCCCcEEEEEeC
Confidence 222111 224578888854
No 262
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=94.47 E-value=0.56 Score=39.19 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=54.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p 116 (257)
++.|+|+ |.+|+.+++.+. +.+++++|.+|..... .+. .-.|+|++.+.+++... . .....+++....+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~-~~g~~vvgfid~~~~~--~~~-----~i~g~pvlg~~~~l~~~-~-~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAE-DSGWEIVGFLDDNPAL--QGT-----SVDGLPVLGGDEDLLRY-P-PDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHH-hCCCEEEEEEcCCccc--cCc-----ccCCccEECCHHHHhhh-c-ccccEEEEEcCCH
Confidence 5889996 999999999886 5689999999853210 111 12367777665554321 0 0122355555556
Q ss_pred HhHHHHHHHHHHcCCCeE
Q 025154 117 STVYDNVKQATAFGMRSV 134 (257)
Q Consensus 117 ~~~~~~~~~a~~~Gi~vV 134 (257)
....+.+..+.+.+..+.
T Consensus 70 ~~~~~i~~~l~~~g~~~~ 87 (201)
T TIGR03570 70 KLRRRLFEKLKAKGYRFA 87 (201)
T ss_pred HHHHHHHHHHHhCCCcce
Confidence 666677777777766543
No 263
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.46 E-value=0.44 Score=45.10 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=82.6
Q ss_pred CccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCC-c---E-EE--EEEecCCCCc--chhhh-----------hc
Q 025154 22 KRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-M---E-VA--GAIDSHSVGE--DIGMV-----------CD 81 (257)
Q Consensus 22 ~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~---e-Lv--g~vd~~~~g~--d~g~~-----------~g 81 (257)
+++...+..+..+++||+|+| +|+=|+++++.+.++-. + + -| ++++....|+ .+.++ -|
T Consensus 8 ~~~~~~~~~~~~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg 86 (372)
T KOG2711|consen 8 DESIRNLGKAERDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPG 86 (372)
T ss_pred chhhhccCchhcCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCC
Confidence 344445566667789999999 69999999998865421 1 0 11 1121111121 11111 12
Q ss_pred CCCCCCeeeecCHHHHHhccccCCCccEEEEcCChHhH----HHHHHHHHHcCCCeEEeCCCCCHH-H---HHHHHHH--
Q 025154 82 MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLE-T---VSALSAF-- 151 (257)
Q Consensus 82 ~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p~~~----~~~~~~a~~~Gi~vViGTTG~s~e-~---~~~L~~~-- 151 (257)
..-|.++...+|+.++.. ++|++| |-.|... .+.+.-.++-+.+.|+-+-|+... + +..+.+.
T Consensus 87 ~~lP~NvvAv~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 87 IKLPENVVAVPDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred ccCCCCeEecchHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 223456777889999884 799988 6655443 355666678888888777787632 1 1222222
Q ss_pred -hhhcCceEEEccCchHHHH
Q 025154 152 -CDKASMGCLIAPTLSIGSI 170 (257)
Q Consensus 152 -a~~~gipvl~spNfSlGvn 170 (257)
+-.-.+.+|-.||++-=|.
T Consensus 160 ~~lgI~~~vL~GaNiA~EVa 179 (372)
T KOG2711|consen 160 RALGIPCSVLMGANIASEVA 179 (372)
T ss_pred HHhCCCceeecCCchHHHHH
Confidence 2222355777788776664
No 264
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=1 Score=43.69 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCeeee--cCHHHHHhccccCCCccEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVv 110 (257)
.||+|+| .|+.|+.+++.+. ..++++. +.|...... +. ..+. ..|+.++ .+..+.+. ++|+|
T Consensus 15 ~~i~v~G-~G~sG~a~a~~L~-~~G~~V~-~~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV 81 (458)
T PRK01710 15 KKVAVVG-IGVSNIPLIKFLV-KLGAKVT-AFDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI 81 (458)
T ss_pred CeEEEEc-ccHHHHHHHHHHH-HCCCEEE-EECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence 4899999 5999999998776 5677755 477421111 10 1121 3455543 22334343 68977
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~ 174 (257)
|--..-....+.+..|.+.|+|++ ||-||-+- --.+.|..+-++.+.......| +|+.++..
T Consensus 82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~~ 159 (458)
T PRK01710 82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN 159 (458)
T ss_pred EECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHHH
Confidence 743211122345566666665544 34444211 1123444444555555566778 56665543
Q ss_pred HHHHhcCCCCCeEEEec
Q 025154 175 AAISASFHYKNVEIVES 191 (257)
Q Consensus 175 ~a~~l~~~~~DiEIiE~ 191 (257)
+. ... ..|+-|+|+
T Consensus 160 ~~-~~~--~~~~~VlE~ 173 (458)
T PRK01710 160 IE-EIK--EEDKVVLEL 173 (458)
T ss_pred Hh-hCC--CCCEEEEEc
Confidence 32 222 356777774
No 265
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.36 E-value=0.69 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=25.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
++||+|+| .|.||..++..+++ .++++.+ +|.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~-~G~~V~~-~D~ 34 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFAS-RQKQVIG-VDI 34 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHh-CCCEEEE-EeC
Confidence 57999999 59999999998774 5788765 564
No 266
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.36 E-value=0.59 Score=45.78 Aligned_cols=138 Identities=22% Similarity=0.175 Sum_probs=77.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe-cCCC-CcchhhhhcCCCCCCeeeec--CHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSV-GEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~-g~d~g~~~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVv 110 (257)
++||+|+| .|+-|+.+++.+.+ .+.++. +.| ++.. +...... ...++.+.. ...+-+ ..+|+|
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~-~G~~v~-v~D~~~~~~~~~~~~~----~~~~i~~~~g~~~~~~~------~~~d~v 73 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLK-LGAEVT-VSDDRPAPEGLAAQPL----LLEGIEVELGSHDDEDL------AEFDLV 73 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHH-CCCeEE-EEcCCCCccchhhhhh----hccCceeecCccchhcc------ccCCEE
Confidence 67999999 69999999998774 566555 566 3221 1111111 123444321 111222 368987
Q ss_pred EEcCC--hHhHHHHHHHHHHcCCCe---------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154 111 IDFTD--ASTVYDNVKQATAFGMRS---------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (257)
Q Consensus 111 IDFT~--p~~~~~~~~~a~~~Gi~v---------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnl 171 (257)
| .|+ |..+. .+..|.+.|+++ +|+-||-+- -.-..|..+.++.|...+++.|....+
T Consensus 74 V-~SPGi~~~~p-~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~-- 149 (448)
T COG0771 74 V-KSPGIPPTHP-LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA-- 149 (448)
T ss_pred E-ECCCCCCCCH-HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--
Confidence 7 442 22221 444444444433 344454321 234578888999999999999987776
Q ss_pred HHHHHHHhcCCCCCeEEEecc
Q 025154 172 LQQAAISASFHYKNVEIVESR 192 (257)
Q Consensus 172 l~~~a~~l~~~~~DiEIiE~H 192 (257)
++.+.+ . ..+|+-++|.-
T Consensus 150 l~~~~~-~--~~~d~~VlElS 167 (448)
T COG0771 150 LELLEQ-A--EPADVYVLELS 167 (448)
T ss_pred HHhhcc-c--CCCCEEEEEcc
Confidence 433332 1 35677777743
No 267
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.33 E-value=0.13 Score=48.03 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=60.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
..+++|+| +|.||+.+++.+.....++-+.++++.. ..+..+...-...+ +.+++|.++++. ++||||-
T Consensus 128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVit 198 (325)
T TIGR02371 128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVT 198 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEE
Confidence 35899999 5999999999888777888888888642 11112211001233 566889999985 7999987
Q ss_pred cCChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154 113 FTDASTVYDNV-KQATAFGMRSV-VYV 137 (257)
Q Consensus 113 FT~p~~~~~~~-~~a~~~Gi~vV-iGT 137 (257)
.|. +.. +++ ...++-|.++. ||+
T Consensus 199 aT~-s~~-P~~~~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 199 TTP-SRK-PVVKADWVSEGTHINAIGA 223 (325)
T ss_pred ecC-CCC-cEecHHHcCCCCEEEecCC
Confidence 763 221 222 33468898876 664
No 268
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.32 E-value=0.21 Score=50.73 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=28.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
++||.|.|++|-+|+.+++.+.++.++++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 578999999999999999998866678998764
No 269
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.31 E-value=0.18 Score=46.83 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.+||+|+|| |.||..++..+....-.+ +..+|.
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 469999997 999999998776543246 667785
No 270
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.31 E-value=0.25 Score=43.85 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhc-CCcEEEEE--EecCCCCcchhhhhcCCCCCCeeeec-CHHHHHhccccCCCcc
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA--IDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARA 108 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~--vd~~~~g~d~g~~~g~~~~~gv~v~~-dl~~~l~~~~~~~~~D 108 (257)
.++.||+|+| +|.+|.-+.--+..+ ..+|..+. +|+...|. ... .++|++.+. -++-++.. -.-.+.|
T Consensus 2 ~sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdgl--ara----arlgv~tt~egv~~ll~~-p~~~di~ 73 (310)
T COG4569 2 SSKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL--ARA----ARLGVATTHEGVIGLLNM-PEFADID 73 (310)
T ss_pred CCcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHH--HHH----HhcCCcchhhHHHHHHhC-CCCCCcc
Confidence 4678999999 799998765545544 44554433 45432221 111 145665432 23444431 0002345
Q ss_pred EEEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 109 VvIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
.|.|.|+.-++.+++..+.+.|++++==|+
T Consensus 74 lvfdatsa~~h~~~a~~~ae~gi~~idltp 103 (310)
T COG4569 74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP 103 (310)
T ss_pred eEEeccccchhhcchHhHHhcCCceeecch
Confidence 899999999999999999999999885554
No 271
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.26 E-value=0.27 Score=44.49 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=52.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-----C--CCCCeeeecCHHHHHhccccCCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-----E--QPLEIPVMSDLTMVLGSISQSKA 106 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~--g~-----~--~~~gv~v~~dl~~~l~~~~~~~~ 106 (257)
|||+|+|+ |.||..++..+.+. +.++..+ ++. .....+. +. . ......+.++.+++.. .
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~-~r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFL-VRP---KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG------P 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHC-CCceEEE-ecH---HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC------C
Confidence 68999996 99999999988754 5665543 321 1111110 00 0 0001123455655543 7
Q ss_pred ccEEEEcCChHhHHHHHHHH---HHcCCCeEEeCCCCCH
Q 025154 107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL 142 (257)
Q Consensus 107 ~DVvIDFT~p~~~~~~~~~a---~~~Gi~vViGTTG~s~ 142 (257)
+|++|-.+.+..+.+.+... +..+..+|+-..|+..
T Consensus 69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 89988777655454444433 3345555555568864
No 272
>PRK12320 hypothetical protein; Provisional
Probab=94.22 E-value=0.32 Score=50.12 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=51.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eec-----CHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMS-----DLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~-----dl~~~l~~~~~~~~~DV 109 (257)
|||.|+|++|.+|+.+++.+.+ .+.++.+...... +. . ..++. +.. .+.+++. ++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~---~~---~----~~~ve~v~~Dl~d~~l~~al~------~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPH---DA---L----DPRVDYVCASLRNPVLQELAG------EADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChh---hc---c----cCCceEEEccCCCHHHHHHhc------CCCE
Confidence 5899999999999999998875 5788876543211 00 0 00111 111 1333442 6899
Q ss_pred EEEcCChH----------hHHHHHHHHHHcCCCeEE
Q 025154 110 VIDFTDAS----------TVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 110 vIDFT~p~----------~~~~~~~~a~~~Gi~vVi 135 (257)
||.+.... .+...+..|.+.|+.+|.
T Consensus 64 VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~ 99 (699)
T PRK12320 64 VIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLF 99 (699)
T ss_pred EEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence 99986421 133456778888888774
No 273
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.19 E-value=0.23 Score=44.67 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=26.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
|+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-CCEEEEEEe
Confidence 47999999999999999988754 677776543
No 274
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.19 E-value=0.29 Score=46.06 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=27.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
.+||.|.|++|-.|+.+++.+.+ .+.++.++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKA-EGHYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHh-CCCEEEEEE
Confidence 57999999999999999999875 478887754
No 275
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.18 E-value=0.24 Score=46.39 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=42.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|+|+| +|+||+.+++.+. .-++++. ++|+.. ..... ...++. +.++++++. .+|+|+-..
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~-~~G~~V~-~~d~~~--~~~~~-----~~~~~~-~~~l~ell~------~aDiV~l~l 212 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAK-GFGMRIL-YYSRTR--KPEAE-----KELGAE-YRPLEELLR------ESDFVSLHV 212 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHH-HCCCEEE-EECCCC--ChhhH-----HHcCCE-ecCHHHHHh------hCCEEEEeC
Confidence 36899999 5999999999876 4578876 567532 11110 022333 468999985 799888554
No 276
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.14 E-value=0.45 Score=42.34 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.8
Q ss_pred eEEEEcCCChHHHHHHHHHHhcC-CcEEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~ 66 (257)
||.|+|++|.+|+.+++.+.+.. +.++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999987654 4777653
No 277
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.12 E-value=0.29 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-||+|+|+ |.||+.|+..++ ..+++++ ++|.
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la-~aG~~V~-l~D~ 38 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAA-QAGHTVL-LYDA 38 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence 47999996 999999999876 4588876 5664
No 278
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.10 E-value=0.34 Score=43.72 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee----e---cCHHHHHhccccCCC
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA 106 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v----~---~dl~~~l~~~~~~~~ 106 (257)
.|++|.|.|.| .=|+.+++.+.+. +..+..-+.... |. .. ..++++ . +++.+.+.+ .+
T Consensus 1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~~-------~~~~~v~~G~l~~~~~l~~~l~~----~~ 65 (248)
T PRK08057 1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-PA-------DLPGPVRVGGFGGAEGLAAYLRE----EG 65 (248)
T ss_pred CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-cc-------cCCceEEECCCCCHHHHHHHHHH----CC
Confidence 36789999975 6789999887644 676655444321 22 11 122222 2 345555544 78
Q ss_pred ccEEEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH---------HHHHHHHHHhhhcCceEEEccCchHHHHHHH
Q 025154 107 RAVVIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 173 (257)
Q Consensus 107 ~DVvIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~---------e~~~~L~~~a~~~gipvl~spNfSlGvnll~ 173 (257)
+++|||.|||-+. ......|.+.|+|.+ ..=+.|.. +..+++.+++.+. -.|| +++|.+-+.
T Consensus 66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vl----lttGsk~l~ 140 (248)
T PRK08057 66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVL----LTTGRQPLA 140 (248)
T ss_pred CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEE----EecCcchHH
Confidence 9999999998554 455688889999987 33233311 1222333333333 2566 378887666
Q ss_pred HHHH
Q 025154 174 QAAI 177 (257)
Q Consensus 174 ~~a~ 177 (257)
.+..
T Consensus 141 ~f~~ 144 (248)
T PRK08057 141 HFAA 144 (248)
T ss_pred HHhh
Confidence 6653
No 279
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.05 E-value=0.5 Score=46.31 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=74.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---h-----------cCCC-CCCeeeecCH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---C-----------DMEQ-PLEIPVMSDL 94 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~-----------g~~~-~~gv~v~~dl 94 (257)
..||+|.| .|.+|+..++.+. +.+.+++++.|+. ..|-|..++ . +... ..+.... +.
T Consensus 237 Gk~VaVqG-~GnVg~~aa~~L~-e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~ 313 (454)
T PTZ00079 237 GKTVVVSG-SGNVAQYAVEKLL-QLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG 313 (454)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence 36999999 5999999999886 5699999999953 335554443 1 0000 0122222 23
Q ss_pred HHHHhccccCCCccEEEEcCChH-hHHHHHHHHHHcCCCeEEeCCC--CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 95 TMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 95 ~~~l~~~~~~~~~DVvIDFT~p~-~~~~~~~~a~~~Gi~vViGTTG--~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
++++. .++||++=+.... -..+++...++++..+|++-.. .+++..+.| .++ .|+|.|-+.
T Consensus 314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L---~~~---GI~~~PD~~ 377 (454)
T PTZ00079 314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF---KKN---GVIFCPGKA 377 (454)
T ss_pred cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH---HHC---CcEEEChhh
Confidence 44554 4799988765433 3367788888999999998662 344333333 233 567667654
No 280
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.04 E-value=0.26 Score=47.94 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=56.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.-+|+|+| +|.+|+.+++.+.. -+.+++ ++|... .+ ..+.. ..|..+ .++++++. .+||+|++|
T Consensus 212 Gk~VlViG-~G~IG~~vA~~lr~-~Ga~Vi-V~d~dp-~r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~aT 275 (425)
T PRK05476 212 GKVVVVAG-YGDVGKGCAQRLRG-LGARVI-VTEVDP-IC-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTAT 275 (425)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-CCCEEE-EEcCCc-hh-hHHHH----hcCCEe-cCHHHHHh------CCCEEEECC
Confidence 35899999 59999999998764 467744 455321 01 01100 123333 36777774 799999998
Q ss_pred ChHhHHH-HHHHHHHcCCCeEEeCCCCC-HHHHHHHHHHh
Q 025154 115 DASTVYD-NVKQATAFGMRSVVYVPHIQ-LETVSALSAFC 152 (257)
Q Consensus 115 ~p~~~~~-~~~~a~~~Gi~vViGTTG~s-~e~~~~L~~~a 152 (257)
-.....+ .....++.|.-++... .++ +-+.+.|++.+
T Consensus 276 G~~~vI~~~~~~~mK~GailiNvG-~~d~Eid~~~L~~~~ 314 (425)
T PRK05476 276 GNKDVITAEHMEAMKDGAILANIG-HFDNEIDVAALEELA 314 (425)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEcC-CCCCccChHHHhhcC
Confidence 5443333 3444455654444322 222 22334455553
No 281
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.02 E-value=0.48 Score=41.90 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=49.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
||+++|.| +|.||..+++.+. ..++|++=+-.+. .+.-+.+. +.++..+ -.+.+++.+ ..|||+-.
T Consensus 1 m~~~~i~G-tGniG~alA~~~a-~ag~eV~igs~r~---~~~~~a~a--~~l~~~i~~~~~~dA~~------~aDVVvLA 67 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLA-KAGHEVIIGSSRG---PKALAAAA--AALGPLITGGSNEDAAA------LADVVVLA 67 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHH-hCCCeEEEecCCC---hhHHHHHH--HhhccccccCChHHHHh------cCCEEEEe
Confidence 78999999 6999999999877 4578876443221 11111000 1112222 234455553 68998844
Q ss_pred CChHhHHHHHHHHHH-cCCCeEEeCC
Q 025154 114 TDASTVYDNVKQATA-FGMRSVVYVP 138 (257)
Q Consensus 114 T~p~~~~~~~~~a~~-~Gi~vViGTT 138 (257)
.+-+...+.+..... .+=.+||-+|
T Consensus 68 VP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 68 VPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred ccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 444555555544432 4333444444
No 282
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.00 E-value=0.32 Score=47.53 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhh---hcCC-----------CCC-CeeeecCHH
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMV---CDME-----------QPL-EIPVMSDLT 95 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~---~g~~-----------~~~-gv~v~~dl~ 95 (257)
.||+|.| .|.+|+..++.+. +.+.+|+++.|+. ..|-|...+ .... ..+ +.... +.+
T Consensus 229 ~~vaIQG-fGnVG~~aA~~L~-e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~ 305 (445)
T PRK14030 229 KTVAISG-FGNVAWGAATKAT-ELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGK 305 (445)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCc
Confidence 6999999 5999999999886 5799999988742 335554432 1000 011 22222 345
Q ss_pred HHHhccccCCCccEEEEcCCh-HhHHHHHHHHHHcCCCeEEeCC-CC-CHHHHHHHHHHhhhcCceEEEccCch
Q 025154 96 MVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP-HI-QLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 96 ~~l~~~~~~~~~DVvIDFT~p-~~~~~~~~~a~~~Gi~vViGTT-G~-s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
+++. .++||+|=+... .-..+++....+++..+|++-. +. ++|..+.| +++ .|++.|-+.
T Consensus 306 ~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL----~~r--GI~~vPD~~ 368 (445)
T PRK14030 306 KPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKF----IAA--KQLFAPGKA 368 (445)
T ss_pred ccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH----HHC--CCEEeCcce
Confidence 5665 489999976543 3346788888888999999876 43 33322223 333 456656554
No 283
>PRK05086 malate dehydrogenase; Provisional
Probab=93.94 E-value=0.64 Score=43.18 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~ 69 (257)
|||+|+||+|++|+.++..+.. .+....+..+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~ 35 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence 6999999999999999987754 334444455664
No 284
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.94 E-value=0.5 Score=47.68 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
-.|.|.|++|++|+.+++.+++ .++++++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk-~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK-LGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeC
Confidence 3699999999999999998875 5888877653
No 285
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.87 E-value=0.3 Score=47.31 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
++|||+|+| +|.||.-++..+++ ++++++ +|.
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~--~~~V~g-~D~ 36 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK--SRQVVG-FDV 36 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc--CCEEEE-EeC
Confidence 358999999 79999999988664 588775 664
No 286
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.85 E-value=0.39 Score=41.81 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||+|+|+ |.||..++..+.. .++.=+-++|.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDF 53 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECC
Confidence 358999996 9999999998874 57754446764
No 287
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.75 E-value=0.43 Score=45.40 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
++||.|+|++|.+|+.+++.+.+ .+.++++..-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEe
Confidence 57999999999999999998875 5788887653
No 288
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.72 E-value=0.2 Score=46.62 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=41.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (257)
.+||+|+|+ |.+|..++-.+....-..=...+|... .|. |............+..+.|+++ + .++|+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~------~~adi 74 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T------ANSKV 74 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h------CCCCE
Confidence 359999996 999999998777554443344677431 121 2222111100123444578887 4 37998
Q ss_pred EEEc
Q 025154 110 VIDF 113 (257)
Q Consensus 110 vIDF 113 (257)
||-+
T Consensus 75 vvit 78 (312)
T cd05293 75 VIVT 78 (312)
T ss_pred EEEC
Confidence 8864
No 289
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.69 E-value=0.39 Score=40.91 Aligned_cols=143 Identities=11% Similarity=0.145 Sum_probs=71.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
.+|+|+| +|..|++++..+. +.+++++-...+....++..+ .-|..++ +++++.. .+|||+-.+
T Consensus 5 k~IAViG-yGsQG~a~AlNLr-DSG~~V~Vglr~~s~s~~~A~------~~Gf~v~-~~~eAv~------~aDvV~~L~- 68 (165)
T PF07991_consen 5 KTIAVIG-YGSQGHAHALNLR-DSGVNVIVGLREGSASWEKAK------ADGFEVM-SVAEAVK------KADVVMLLL- 68 (165)
T ss_dssp SEEEEES--SHHHHHHHHHHH-HCC-EEEEEE-TTCHHHHHHH------HTT-ECC-EHHHHHH------C-SEEEE-S-
T ss_pred CEEEEEC-CChHHHHHHHHHH-hCCCCEEEEecCCCcCHHHHH------HCCCeec-cHHHHHh------hCCEEEEeC-
Confidence 5899999 6999999999876 678888766654211111111 2344443 6677775 799877554
Q ss_pred hHhH-----HHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE-EccCchHHHHHHHHHHHHhcCCCCCeEEE
Q 025154 116 ASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSILLQQAAISASFHYKNVEIV 189 (257)
Q Consensus 116 p~~~-----~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl-~spNfSlGvnll~~~a~~l~~~~~DiEIi 189 (257)
|+.. .+.+...++-|.-++ =..||+- ....|+-- .++-++ ++|- +.|..+=+.+.+ +.+.- -.+
T Consensus 69 PD~~q~~vy~~~I~p~l~~G~~L~-fahGfni-~~~~i~pp---~~vdV~mvAPK-gpG~~vR~~y~~---G~Gvp-~l~ 138 (165)
T PF07991_consen 69 PDEVQPEVYEEEIAPNLKPGATLV-FAHGFNI-HYGLIKPP---KDVDVIMVAPK-GPGHLVRREYVE---GRGVP-ALI 138 (165)
T ss_dssp -HHHHHHHHHHHHHHHS-TT-EEE-ESSSHHH-HCTTS------TTSEEEEEEES-SSCHHHHHHHHC---CTS---EEE
T ss_pred ChHHHHHHHHHHHHhhCCCCCEEE-eCCcchh-hcCcccCC---CCCeEEEEecC-CCChHHHHHHHc---CCCce-EEE
Confidence 4333 345555667777554 3567764 22333321 225555 4554 446654333331 11111 112
Q ss_pred eccCCCCCCCCCccHHHHHH
Q 025154 190 ESRPNARVRYMTRTLISMQV 209 (257)
Q Consensus 190 E~HH~~K~DapSGTa~~l~~ 209 (257)
=.| . -+||.|.+++.
T Consensus 139 AV~----q-D~sg~A~~~al 153 (165)
T PF07991_consen 139 AVH----Q-DASGKAKELAL 153 (165)
T ss_dssp EEE----E--SSS-HHHHHH
T ss_pred EEE----E-CCCchHHHHHH
Confidence 222 2 25788888864
No 290
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.68 E-value=0.44 Score=44.65 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=41.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
++|+|+| +|+||+.+++.+. .-++++.+ +|+.. ..... .+...++++++++ .+|+|+...
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~-~~G~~V~~-~d~~~-~~~~~---------~~~~~~~l~ell~------~aDiVil~l 206 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYA-GFGATITA-YDAYP-NKDLD---------FLTYKDSVKEAIK------DADIISLHV 206 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-EeCCh-hHhhh---------hhhccCCHHHHHh------cCCEEEEeC
Confidence 5899999 5999999999876 46888875 56431 00000 1223468899985 799888554
No 291
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.68 E-value=0.66 Score=44.76 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=69.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhhcCCCCCC-eeeecCHHHHHhcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI 101 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~g~~~g~~~~~g-v~v~~dl~~~l~~~ 101 (257)
|||.|+| +|-.|-.....++ +-+++++++ |. +-....+.+++......| ...++|+++++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA-~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~-- 75 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLA-ELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK-- 75 (414)
T ss_pred CceEEEC-CchHHHHHHHHHH-HcCCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence 7999999 6999999887665 557888864 41 111112333332111122 677889998885
Q ss_pred ccCCCccEEEEcC-Ch------------HhHHHHHHHHHHcCCCeEEeC-C---CCCHHHHHHHHHHhhhcCceEEEccC
Q 025154 102 SQSKARAVVIDFT-DA------------STVYDNVKQATAFGMRSVVYV-P---HIQLETVSALSAFCDKASMGCLIAPT 164 (257)
Q Consensus 102 ~~~~~~DVvIDFT-~p------------~~~~~~~~~a~~~Gi~vViGT-T---G~s~e~~~~L~~~a~~~gipvl~spN 164 (257)
..||++..+ +| +++.+.+..++... ++|+.+ | |++++-.+.+.+........|+++|=
T Consensus 76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~-~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPE 150 (414)
T COG1004 76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGK-AVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPE 150 (414)
T ss_pred ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCC-eEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChH
Confidence 789877764 22 12222333333333 566554 3 77776555565555443455666666
Q ss_pred c
Q 025154 165 L 165 (257)
Q Consensus 165 f 165 (257)
|
T Consensus 151 F 151 (414)
T COG1004 151 F 151 (414)
T ss_pred H
Confidence 5
No 292
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=93.68 E-value=0.52 Score=42.85 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.7
Q ss_pred EEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.|+|++|-+|+.+++.+.++....=|-++|.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 3899999999999999997765333445663
No 293
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.62 E-value=1.9 Score=41.51 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=71.1
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCeeeec--CHHHHHhccccCCCccEEEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVvIDF 113 (257)
-|+|+|. |+.|..+++.+. ..+.++. +.|..........+. .. .|+.++. ...+.+. ++|+||--
T Consensus 8 ~~~v~G~-G~sG~s~a~~L~-~~G~~v~-~~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV~s 75 (448)
T PRK03803 8 LHIVVGL-GKTGLSVVRFLA-RQGIPFA-VMDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEIIIS 75 (448)
T ss_pred eEEEEee-cHhHHHHHHHHH-hCCCeEE-EEeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEEEC
Confidence 5899995 999999888765 5688765 477432111112221 11 2666632 1233443 68877743
Q ss_pred C-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154 114 T-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 114 T-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a 176 (257)
+ .|.. .+.+..|.++|+|++ |+-||-+- --...|..+-++.|..++...|+ |..++..+
T Consensus 76 p~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni--g~p~~~~~- 151 (448)
T PRK03803 76 PGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI--GTPALDLL- 151 (448)
T ss_pred CCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc--CHHHHHHh-
Confidence 3 1222 234444555555543 34454321 11234555556666778888885 44433221
Q ss_pred HHhcCCCCCeEEEec
Q 025154 177 ISASFHYKNVEIVES 191 (257)
Q Consensus 177 ~~l~~~~~DiEIiE~ 191 (257)
.+ ..|+-|+|.
T Consensus 152 ---~~-~~~~~V~E~ 162 (448)
T PRK03803 152 ---SD-DPELYVLEL 162 (448)
T ss_pred ---cC-CCCEEEEEc
Confidence 21 346667774
No 294
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.68 Score=40.93 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=49.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
|.++.|+|++|.+|+.+++.+.+ .+.+++.. ++.. ... +++.+ ...+ +..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~------------------~~~~~-----~~~~~~~~Dl 53 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKA-AGYEVWAT-ARKA--EDV------------------EALAA-----AGFTAVQLDV 53 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHH-CCCEEEEE-eCCH--HHH------------------HHHHH-----CCCeEEEeeC
Confidence 45799999999999999998874 57887754 3321 111 11111 1233 34678
Q ss_pred CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
+.++...+.+..+.+. ++.+|+=..|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 54 NDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 8877777776666443 4677766655
No 295
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.35 Score=42.74 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=90.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---e-cCHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M-SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v---~-~dl~~~l~~~~~~~~~DVvI 111 (257)
|+++|+|+ |++|..+++.+. ..+.+++.+-..+ ....+... ...++.+ . .+.+ +|.+. --.++|++|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~-~~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~-~L~~a-gi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELS-EEGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDED-VLEEA-GIDDADAVV 71 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHH-hCCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHH-HHHhc-CCCcCCEEE
Confidence 68999996 999999999887 4577777655422 11111111 0122222 1 2333 33221 013689888
Q ss_pred EcCChHhHH-HHHHHH-HHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH----HHhcCCC-C
Q 025154 112 DFTDASTVY-DNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA----ISASFHY-K 184 (257)
Q Consensus 112 DFT~p~~~~-~~~~~a-~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a----~~l~~~~-~ 184 (257)
=.|.-+... -....+ .+.|+|-|+...- +++..+.+ ++-|+-.+++|=...|-.+...+. ..+.... -
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~-~~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~ 146 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARAR-NPEHEKVL----EKLGADVIISPEKLAAKRLARLIVTPGALDVLELAGG 146 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEec-CHHHHHHH----HHcCCcEEECHHHHHHHHHHHHhcCCChheEEeecCC
Confidence 666543332 223333 3489999987764 23333333 334467888888888876654432 1111111 1
Q ss_pred CeEEEeccCCCCCCCCCccHHHHH
Q 025154 185 NVEIVESRPNARVRYMTRTLISMQ 208 (257)
Q Consensus 185 DiEIiE~HH~~K~DapSGTa~~l~ 208 (257)
+.+++|..=....--.+-|..++.
T Consensus 147 ~~~~~~~~v~~~~~~~g~~L~el~ 170 (225)
T COG0569 147 DAEVIEEKVAEDSPLAGKTLRELD 170 (225)
T ss_pred cceEEEEEecCCCccCCcCHHHhc
Confidence 688888766655446777887776
No 296
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.51 E-value=0.18 Score=47.24 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=68.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEE--EEec--CCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAG--AIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg--~vd~--~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
.++|+| ||||-.|+.+.+.+. +.++.+-- .+.+ ...|+.+. +. ...+.+..=-++.+ .++|++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Le-er~fpv~~l~l~~s~~~s~gk~i~-f~----g~~~~V~~l~~~~f------~~vDia 69 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALE-QSDLEIEQISIVEIEPFGEEQGIR-FN----NKAVEQIAPEEVEW------ADFNYV 69 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHH-hcCCchhheeecccccccCCCEEE-EC----CEEEEEEECCccCc------ccCCEE
Confidence 479999 999999999999765 45554331 1111 12232221 11 11233322112233 279988
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeEEeCCC-------------CCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSVVYVPH-------------IQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vViGTTG-------------~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+ |+..+.+.+.+..+.+.|..||-=+.- .++|.++.++ + -.++-.||=|.=.
T Consensus 70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~--~~IIanPNCsTi~ 134 (322)
T PRK06901 70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----Q--RNIVSLPDPQVSQ 134 (322)
T ss_pred E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----C--CCEEECCcHHHHH
Confidence 8 577788889999999998877754433 3555433332 2 2488899977544
No 297
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.51 E-value=0.19 Score=46.60 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=53.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC--CCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP--LEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~--~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.+|+|+| +|.||+.+++.+....+.+=+-++++.. ..+..++..-.. ..+.+.+++++++. ++||||-.
T Consensus 126 ~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA 196 (314)
T ss_pred ceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence 5899999 5999999998776544555555676531 112222211001 13666789988885 79998766
Q ss_pred CChHhHHHHH-HHHHHcCCCeE
Q 025154 114 TDASTVYDNV-KQATAFGMRSV 134 (257)
Q Consensus 114 T~p~~~~~~~-~~a~~~Gi~vV 134 (257)
|... ...+ ...++.|.++.
T Consensus 197 T~s~--~pvl~~~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRGEWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecHHHcCCCCEEE
Confidence 6422 1211 23457787554
No 298
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=93.50 E-value=0.53 Score=42.15 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=23.2
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
|.|+|++|-+|+.+++.+.+. +. +++ ++++
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~-~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDIL-VVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEE-EEec
Confidence 579999999999999998865 55 554 4453
No 299
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.29 Score=44.53 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=73.1
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH-----HHHHhccccCCC
Q 025154 32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL-----TMVLGSISQSKA 106 (257)
Q Consensus 32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl-----~~~l~~~~~~~~ 106 (257)
+..++||++.||.|-.|+.+++++..+|-+|+.-+..+...|+....+. +..+. |.|+ -.+.+ ...
T Consensus 16 ~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~yt----k~eiq-y~~lst~D~~klee----~~a 86 (340)
T KOG4354|consen 16 PEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYT----KLEIQ-YADLSTVDAVKLEE----PHA 86 (340)
T ss_pred cCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcc----hhhee-ecccchhhHHHhhc----CCc
Confidence 3457999999999999999999999999999987776555555443221 11111 2222 22222 123
Q ss_pred ccEEEEcCChHhHHHHHHHHH--HcCCCeEE----------------eCCCCCHHHHHHHHHHhhhcCceEEEccCchHH
Q 025154 107 RAVVIDFTDASTVYDNVKQAT--AFGMRSVV----------------YVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 168 (257)
Q Consensus 107 ~DVvIDFT~p~~~~~~~~~a~--~~Gi~vVi----------------GTTG~s~e~~~~L~~~a~~~gipvl~spNfSlG 168 (257)
.|-++ |..|..+..-...++ .+|+..+| |-|.+++ .+.|+.+.+-++ |-.|+..-.++
T Consensus 87 vd~wv-maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElnd--Re~i~na~~iaN-PGCYaTgsQl~ 162 (340)
T KOG4354|consen 87 VDHWV-MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELND--REDIKNARLIAN-PGCYATGSQLP 162 (340)
T ss_pred eeeee-eecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCccccc--HHHHhhhhhccC-CCcccccCccc
Confidence 34433 677766644332222 24444443 3344432 456777665444 66676666666
Q ss_pred HH
Q 025154 169 SI 170 (257)
Q Consensus 169 vn 170 (257)
..
T Consensus 163 l~ 164 (340)
T KOG4354|consen 163 LV 164 (340)
T ss_pred ch
Confidence 54
No 300
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=93.29 E-value=0.78 Score=35.90 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=21.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
|||.|+| +|.=-.+++..+.+++..+-+.+.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~a 31 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVA 31 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEe
Confidence 7999999 695556667777777776544433
No 301
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=93.26 E-value=0.37 Score=43.47 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=71.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCeee-----ecCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPV-----MSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~-~~~gv~v-----~~dl~~~l~~~~~~~~~DV 109 (257)
|||.|.|.| .=|+.+++.+.+... -++.++-+ . |.. +.... ....+.+ .+++.+.+.+ .++|.
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t~-~-g~~---~~~~~~~~~~v~~G~lg~~~~l~~~l~~----~~i~~ 69 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVATS-Y-GGE---LLKPELPGLEVRVGRLGDEEGLAEFLRE----NGIDA 69 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEhh-h-hHh---hhccccCCceEEECCCCCHHHHHHHHHh----CCCcE
Confidence 689999975 678999988876554 33333321 1 211 11000 0011211 2344455543 78999
Q ss_pred EEEcCChHhH---HHHHHHHHHcCCCeE-EeCCCCCH---------HHHHHHHHHh-hhcCceEEEccCchHHHHHHHHH
Q 025154 110 VIDFTDASTV---YDNVKQATAFGMRSV-VYVPHIQL---------ETVSALSAFC-DKASMGCLIAPTLSIGSILLQQA 175 (257)
Q Consensus 110 vIDFT~p~~~---~~~~~~a~~~Gi~vV-iGTTG~s~---------e~~~~L~~~a-~~~gipvl~spNfSlGvnll~~~ 175 (257)
|||.|||-+. ......|.+.|+|.+ ..=+.|.. +..++..+++ +..+-.||+ .+|.+-+..+
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f 145 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPF 145 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHH
Confidence 9999998555 455688889999987 33333321 1122333333 232246774 8899877777
Q ss_pred HH
Q 025154 176 AI 177 (257)
Q Consensus 176 a~ 177 (257)
..
T Consensus 146 ~~ 147 (249)
T PF02571_consen 146 VP 147 (249)
T ss_pred hh
Confidence 54
No 302
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.39 Score=46.46 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=29.8
Q ss_pred CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
+++...+..|.|+||+|+.||.+++.+.+ .++.+-+++-
T Consensus 73 ~~~~~~~~~VlVvGatG~vG~~iv~~llk-rgf~vra~VR 111 (411)
T KOG1203|consen 73 NNNSKKPTTVLVVGATGKVGRRIVKILLK-RGFSVRALVR 111 (411)
T ss_pred CCCCCCCCeEEEecCCCchhHHHHHHHHH-CCCeeeeecc
Confidence 34445578999999999999999998775 5666655553
No 303
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.20 E-value=0.28 Score=47.53 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=56.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
.-||.|+|| |.||+.+++.+.+ .++.-+-++.+.. ..+.+++. +++ +.-++++.+.+. ++||||-
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~-~g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVis 244 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAE-KGVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVIS 244 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHh-CCCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEEE
Confidence 357999996 9999999999875 4666666666542 12233332 333 333566677774 7999998
Q ss_pred cC---ChHhHHHHHHHHHHcCCC
Q 025154 113 FT---DASTVYDNVKQATAFGMR 132 (257)
Q Consensus 113 FT---~p~~~~~~~~~a~~~Gi~ 132 (257)
.| +|-...+.+..+++....
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC
Confidence 76 355556788888776666
No 304
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.19 E-value=0.39 Score=47.63 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=25.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||+|+|+ |.||+.|+..++ ..+++++ ++|.
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la-~aG~~V~-l~d~ 36 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAA-SAGHQVL-LYDI 36 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHH-hCCCeEE-EEeC
Confidence 347999996 999999999876 4588876 4664
No 305
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.19 E-value=0.32 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHh
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTK 57 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~ 57 (257)
|+||+|+|++|++|..++-.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh
Confidence 67999999889999999987764
No 306
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.17 E-value=0.62 Score=42.39 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
|||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~-~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQ-NGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHH-CCCeEEEE
Confidence 5899999999999999998875 57888764
No 307
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=93.16 E-value=0.27 Score=45.19 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|.||.|+|++|-+|+.+++.+.+ .+.+++.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~-~g~~~v~~~~~ 34 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIIN-ETSDAVVVVDK 34 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHH-cCCCEEEEEec
Confidence 56999999999999999999885 45666666664
No 308
>PRK05442 malate dehydrogenase; Provisional
Probab=93.13 E-value=0.32 Score=45.61 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHh
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTK 57 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~ 57 (257)
..|.||+|+||+|.+|..++-.+..
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~ 26 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIAS 26 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHh
Confidence 4678999999889999999876654
No 309
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=93.11 E-value=1.3 Score=42.89 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVv 110 (257)
+-|+.|+|+ |..|+.+++.+.+++ +++++|.+|.... ..+. .-.|+++..+ +.+.+.+ .++|.|
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV 192 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence 457999995 999999999887644 6899999985310 0110 0235666543 4444432 578854
Q ss_pred EEcC---ChHhHHHHHHHHHHcCC-CeEE
Q 025154 111 IDFT---DASTVYDNVKQATAFGM-RSVV 135 (257)
Q Consensus 111 IDFT---~p~~~~~~~~~a~~~Gi-~vVi 135 (257)
+-.. .++...+.+..|.+.++ .+.+
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v~~V~~ 221 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHFRNVLI 221 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCCeEEEE
Confidence 4332 34555677778888888 5443
No 310
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.10 E-value=0.41 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR 59 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~ 59 (257)
+||+|+||+|++|+.++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 589999988999999998877543
No 311
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=93.08 E-value=1.1 Score=43.59 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=68.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh--hcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV--CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~~--~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
-+|.|+|+ |..|..+++.+. .+|+.=.-++|.... ..|.+.. +.. +..|-+-.....+.+.+ .++||-++
T Consensus 21 s~VlliG~-gglGsEilKNLv-L~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i~ 93 (425)
T cd01493 21 AHVCLLNA-TATGTEILKNLV-LPGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNGS 93 (425)
T ss_pred CeEEEEcC-cHHHHHHHHHHH-HcCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEEE
Confidence 48999996 899999999987 678876777885321 1122110 000 00111101111222322 47888777
Q ss_pred cC--ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 113 FT--~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
+. .++...+.... .=.+..+||.|+ .+......|.++|.+.++|++++..+.
T Consensus 94 ~~~e~~~~ll~~~~~-f~~~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G 147 (425)
T cd01493 94 AVEESPEALLDNDPS-FFSQFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYG 147 (425)
T ss_pred EEecccchhhhhHHH-HhcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 64 33333322111 123557787655 455566778889999899998766543
No 312
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.04 E-value=0.61 Score=45.61 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhh--------------cCCCCCCeeeecCHHH
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVC--------------DMEQPLEIPVMSDLTM 96 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~--------------g~~~~~gv~v~~dl~~ 96 (257)
.||+|.| .|.+|+..++.+. +.+.+|+++.|+. ..|-|..++. +.....++... +.++
T Consensus 229 ~rVaVQG-fGNVG~~aA~~L~-e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~ 305 (444)
T PRK14031 229 KVCLVSG-SGNVAQYTAEKVL-ELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGAR 305 (444)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcc
Confidence 5999999 5999999999876 5799999998842 2244443221 00001122222 3455
Q ss_pred HHhccccCCCccEEEEcCChH-hHHHHHHHHHHcCCCeEEeCC
Q 025154 97 VLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 97 ~l~~~~~~~~~DVvIDFT~p~-~~~~~~~~a~~~Gi~vViGTT 138 (257)
+++ .++||+|=+.... -..+++......|+.+|++--
T Consensus 306 ~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA 343 (444)
T PRK14031 306 PWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGA 343 (444)
T ss_pred ccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence 554 4788888554433 335677777777888887654
No 313
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=93.02 E-value=0.37 Score=45.53 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=53.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecC--HHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVvID 112 (257)
..+|.|.|++|..|+..++.+. +-++..+.++.+.. ..+.-.-+|. -.+.-|++ ..+.+.+.. ...+|+|+|
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk-~~~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvVlD 231 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAK-HAGAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVVLD 231 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHH-hcCCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEEEE
Confidence 3589999999999999998665 45544443333321 2222221111 11222444 333332100 246999999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
|-........+......|...++++.|
T Consensus 232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 232 CVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred CCCCCccccchhhhccCCceEEEEecc
Confidence 975544444444445566555777765
No 314
>PLN02214 cinnamoyl-CoA reductase
Probab=92.99 E-value=0.71 Score=42.79 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=27.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
+++|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeC
Confidence 46899999999999999998875 5788877653
No 315
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.97 E-value=0.31 Score=44.88 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=23.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
||+|+|+ |.+|+.++..+....-. +| .++|.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei-~l~D~ 33 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADEL-VLIDI 33 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEE-EEEeC
Confidence 8999996 99999999988755432 44 45664
No 316
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.96 E-value=0.43 Score=44.43 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=24.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|||+|+|++|.+|..++-.+...+-..=...+|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 6999999889999999987765543332335664
No 317
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.96 E-value=0.8 Score=42.72 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=29.1
Q ss_pred HHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 94 LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 94 l~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
++++++ ..|||+|.+. .++-+-.-..|.++++++|-+.-||
T Consensus 102 l~~li~------~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGf 143 (307)
T cd01486 102 LEELIK------DHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGF 143 (307)
T ss_pred HHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEecc
Confidence 455664 7899999984 3444556677888999988665555
No 318
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.96 E-value=2.6 Score=40.28 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=71.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCeeee--cCHHHHHhccccCCCccEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvI 111 (257)
||.|+|. |+.|..+++.+. ..+.++. +.|.... .+.. .+.. ...|+.++ .+ .+.+. ++|+||
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~-~~G~~V~-~sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~-~~~~~------~~d~vv 67 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLH-KKGAEVT-VTDLKPN-EELEPSMGQLR--LNEGSVLHTGLH-LEDLN------NADLVV 67 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHH-HCCCEEE-EEeCCCC-ccchhHHHHHh--hccCcEEEecCc-hHHhc------cCCEEE
Confidence 5899995 999999998766 5688765 4774211 1111 1110 02356553 23 33443 689777
Q ss_pred EcC-ChHhHHHHHHHHHHcCCCeE--------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHH
Q 025154 112 DFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 174 (257)
Q Consensus 112 DFT-~p~~~~~~~~~a~~~Gi~vV--------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~ 174 (257)
--+ .|.. .+.+..|.++|+|++ ||-||-+- --...|..+-+..|..++...|+ |..++..
T Consensus 68 ~sp~i~~~-~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni--g~~~~~~ 144 (433)
T TIGR01087 68 KSPGIPPD-HPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI--GTPALEV 144 (433)
T ss_pred ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc--CHHHHHH
Confidence 433 2332 244555566665543 45554321 12234555555566667777785 4443322
Q ss_pred HHHHhcCCCCCeEEEecc
Q 025154 175 AAISASFHYKNVEIVESR 192 (257)
Q Consensus 175 ~a~~l~~~~~DiEIiE~H 192 (257)
+. . ...|+=|+|.-
T Consensus 145 ~~-~---~~~~~~V~E~~ 158 (433)
T TIGR01087 145 LD-Q---EGAELYVLELS 158 (433)
T ss_pred Hh-c---cCCCEEEEEcC
Confidence 21 1 23577777753
No 319
>PRK07340 ornithine cyclodeaminase; Validated
Probab=92.96 E-value=0.29 Score=45.25 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|+|+| +|.||+.+++.+....+.+-+.++++.. ..+..++..-...++.+ ++++++++. ++|+||-.|
T Consensus 126 ~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT 196 (304)
T PRK07340 126 GDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT 196 (304)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence 5899999 5999999999987666677777887541 11112211000112233 578888885 799999877
Q ss_pred ChHhHHHHHHHHHHcCCCeE-EeC
Q 025154 115 DASTVYDNVKQATAFGMRSV-VYV 137 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vV-iGT 137 (257)
.... ..+...++-|.++. ||+
T Consensus 197 ~s~~--Pl~~~~~~~g~hi~~iGs 218 (304)
T PRK07340 197 TSRT--PVYPEAARAGRLVVAVGA 218 (304)
T ss_pred CCCC--ceeCccCCCCCEEEecCC
Confidence 4222 22222367888776 554
No 320
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.95 E-value=0.36 Score=44.13 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=24.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
|+||+|+|+ |.||..++..+....-.+|+ .+|.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 789999997 99999999887754312554 4564
No 321
>PRK06182 short chain dehydrogenase; Validated
Probab=92.95 E-value=1 Score=39.83 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=49.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.+|.|+|++|.+|+.+++.+.+ .+.++++.. +.. ... +++.. .... +..|.+
T Consensus 4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~-r~~--~~l------------------~~~~~-----~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAA-QGYTVYGAA-RRV--DKM------------------EDLAS-----LGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe-CCH--HHH------------------HHHHh-----CCCeEEEeeCC
Confidence 4799999999999999998875 588877643 221 001 11111 1222 446778
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
.++.....+....+. ++.+|+-..|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 57 DEASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 877776666655443 57777766553
No 322
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.90 E-value=0.37 Score=46.48 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=50.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.+|+|+|+ |.||+.+++.+.. .++.-+-++++.. ..+.+++. ..+ ...++++.+.+. .+||||..
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~-~G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~a 247 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLR-KGVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVISS 247 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHH-CCCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEEC
Confidence 58999996 9999999998876 4643344556431 11122221 112 112346666664 79999998
Q ss_pred CC-hHh--HHHHHHHHHHcC-CC-eEEe
Q 025154 114 TD-AST--VYDNVKQATAFG-MR-SVVY 136 (257)
Q Consensus 114 T~-p~~--~~~~~~~a~~~G-i~-vViG 136 (257)
|. |.. ..+.+..+...+ .| +|+-
T Consensus 248 T~s~~~ii~~e~l~~~~~~~~~~~~viD 275 (417)
T TIGR01035 248 TGAPHPIVSKEDVERALRERTRPLFIID 275 (417)
T ss_pred CCCCCceEcHHHHHHHHhcCCCCeEEEE
Confidence 73 332 245566554432 44 4443
No 323
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1 Score=40.06 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=47.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++... +.. ... +++.+ ...+ +..|++
T Consensus 5 k~vlItGasggiG~~la~~l~~-~G~~Vi~~~-r~~--~~~------------------~~l~~-----~~~~~~~~Dl~ 57 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-DGWRVFATC-RKE--EDV------------------AALEA-----EGLEAFQLDYA 57 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE-CCH--HHH------------------HHHHH-----CCceEEEccCC
Confidence 4699999999999999998875 578877643 321 111 11111 1233 346778
Q ss_pred ChHhHHHHHHHHHH---cCCCeEEeCCC
Q 025154 115 DASTVYDNVKQATA---FGMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~---~Gi~vViGTTG 139 (257)
.++.....+..+.+ .++.+|+-..|
T Consensus 58 d~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 58 EPESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 77777666666544 24677765543
No 324
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.88 E-value=0.5 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcC
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKAR 59 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~ 59 (257)
.|+||+|+||+|..|+.++-.+...+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 57999999988999999998776543
No 325
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.85 E-value=0.79 Score=44.35 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=50.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.-+|+|+| +|.+|+.+++.+. .-+++++. +|... .+ ..+.. ..|..+ .++++++. .+|++|++|
T Consensus 195 Gk~VvViG-~G~IG~~vA~~ak-~~Ga~ViV-~d~dp-~r-~~~A~----~~G~~v-~~leeal~------~aDVVItaT 258 (406)
T TIGR00936 195 GKTVVVAG-YGWCGKGIAMRAR-GMGARVIV-TEVDP-IR-ALEAA----MDGFRV-MTMEEAAK------IGDIFITAT 258 (406)
T ss_pred cCEEEEEC-CCHHHHHHHHHHh-hCcCEEEE-EeCCh-hh-HHHHH----hcCCEe-CCHHHHHh------cCCEEEECC
Confidence 34899999 5999999999776 55788554 55321 01 11111 124333 35677764 789999998
Q ss_pred ChHhHHH-HHHHHHHcCCCeE
Q 025154 115 DASTVYD-NVKQATAFGMRSV 134 (257)
Q Consensus 115 ~p~~~~~-~~~~a~~~Gi~vV 134 (257)
-...... ....+++.|.-++
T Consensus 259 G~~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 259 GNKDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred CCHHHHHHHHHhcCCCCcEEE
Confidence 5444443 3444555555444
No 326
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.77 E-value=0.46 Score=44.47 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-+|.||+|+|+.|++|+.++..+....-..-+..+|.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3578999999889999999988875443333335554
No 327
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.77 E-value=0.18 Score=42.73 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=40.5
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
..+|+|+| +|++|+.+++.+. .=++++.+ +|+.. .+..... ..++ -+.++++++. .+|+|+-.
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~--~~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~ 98 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLK-AFGMRVIG-YDRSP--KPEEGAD----EFGV-EYVSLDELLA------QADIVSLH 98 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHH-HTT-EEEE-EESSC--HHHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred CCEEEEEE-EcCCcCeEeeeee-cCCceeEE-ecccC--Chhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence 46899999 6999999999876 56888775 55431 1111011 2234 3569999996 69987754
No 328
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.73 E-value=0.59 Score=43.33 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=40.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe-eeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
-.+|+|+| +|+||+.+++.+. .-++++.+ +|+.. .+ .++ ..+.++++++. .+|+|+-.
T Consensus 122 gktvgIiG-~G~IG~~vA~~l~-afG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~~ 180 (303)
T PRK06436 122 NKSLGILG-YGGIGRRVALLAK-AFGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLIS 180 (303)
T ss_pred CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEEC
Confidence 35899999 6999999998665 45888874 55431 11 112 12568999985 79988754
No 329
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.65 E-value=0.25 Score=47.68 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--eeeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
..+|+|+|+ |.||+.+++.+.. .+.+-+.++++.. ..+..++. .++ +..++++.+.+. .+|+||.
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~-~G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~ 248 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAE-KGVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS 248 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHH-CCCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence 368999995 9999999998874 4664444566431 11122221 222 222345556663 7899999
Q ss_pred cCC-hHh--HHHHHHHHH
Q 025154 113 FTD-AST--VYDNVKQAT 127 (257)
Q Consensus 113 FT~-p~~--~~~~~~~a~ 127 (257)
.|. |.. ..+.+..++
T Consensus 249 aT~s~~~~i~~~~l~~~~ 266 (423)
T PRK00045 249 STGAPHPIIGKGMVERAL 266 (423)
T ss_pred CCCCCCcEEcHHHHHHHH
Confidence 874 332 244555544
No 330
>PRK08291 ectoine utilization protein EutC; Validated
Probab=92.64 E-value=0.36 Score=45.01 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=55.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCe--eeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
..+|+|+|+ |.+|+.++..+....+++-+.++++.. ..+..+.. ..+..++ ..++|+++++. ++|+||
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi 202 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV 202 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence 358999995 999999999887656677888887541 11122211 0012234 44789999885 789998
Q ss_pred EcCChHhHHHHHHH-HHHcCCCeE
Q 025154 112 DFTDASTVYDNVKQ-ATAFGMRSV 134 (257)
Q Consensus 112 DFT~p~~~~~~~~~-a~~~Gi~vV 134 (257)
-.|... ...+.. .++.|.++.
T Consensus 203 ~aT~s~--~p~i~~~~l~~g~~v~ 224 (330)
T PRK08291 203 TTTPSE--EPILKAEWLHPGLHVT 224 (330)
T ss_pred EeeCCC--CcEecHHHcCCCceEE
Confidence 666322 122322 356777654
No 331
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=92.62 E-value=0.38 Score=44.96 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
-.+|||+| +|++|+.+++.+...=+++++ +.|+.. ..+... ..++. +.+++++++ .+|+|+--
T Consensus 145 gktvGIiG-~G~IG~~va~~l~~~fgm~V~-~~~~~~-~~~~~~------~~~~~-~~~l~ell~------~sDvv~lh 207 (323)
T PRK15409 145 HKTLGIVG-MGRIGMALAQRAHFGFNMPIL-YNARRH-HKEAEE------RFNAR-YCDLDTLLQ------ESDFVCII 207 (323)
T ss_pred CCEEEEEc-ccHHHHHHHHHHHhcCCCEEE-EECCCC-chhhHH------hcCcE-ecCHHHHHH------hCCEEEEe
Confidence 36899999 699999999977524578876 455431 111111 22333 468999996 79987754
No 332
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.62 E-value=0.82 Score=39.16 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=48.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
|.+|.|.|++|.+|+.+++.+.+ .+.+|+.+ ++.. .+..++. +. . +.. ..+|+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~-~r~~--~~~~~~~---------------~~-~------~~~~~~~D~ 54 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLE-RGWQVTAT-VRGP--QQDTALQ---------------AL-P------GVHIEKLDM 54 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHh-CCCEEEEE-eCCC--cchHHHH---------------hc-c------ccceEEcCC
Confidence 45799999999999999999885 47887654 4321 1111111 00 0 111 23567
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
+.++.....+....+.++.+|+=..|.
T Consensus 55 ~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 55 NDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 777766666665555567777755443
No 333
>PLN00203 glutamyl-tRNA reductase
Probab=92.59 E-value=0.38 Score=47.94 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=49.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeecCHHHHHhccccCCCccEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
..||+|+|+ |.||+.+++.+.. .+++=+-++++.. ..+..+...-....+ ..++++.+.+. .+|+||-
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~-~G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs 335 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVS-KGCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT 335 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHh-CCCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence 468999996 9999999998875 4654455566531 222223210000112 22456666664 7999998
Q ss_pred cC---ChHhHHHHHHHHH
Q 025154 113 FT---DASTVYDNVKQAT 127 (257)
Q Consensus 113 FT---~p~~~~~~~~~a~ 127 (257)
.| .|-...+.++.+.
T Consensus 336 AT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 336 STSSETPLFLKEHVEALP 353 (519)
T ss_pred ccCCCCCeeCHHHHHHhh
Confidence 76 3444456666554
No 334
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.57 E-value=0.82 Score=42.34 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=27.8
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
.++||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d 46 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD 46 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence 3579999999999999999998864 67887653
No 335
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.54 E-value=1.7 Score=42.24 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=24.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.||.|+|+ |..|..+++.+. ..+.+++ ++|.
T Consensus 17 ~~v~viG~-G~~G~~~A~~L~-~~G~~V~-~~d~ 47 (480)
T PRK01438 17 LRVVVAGL-GVSGFAAADALL-ELGARVT-VVDD 47 (480)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEE-EEeC
Confidence 48999996 999999998776 5678855 4663
No 336
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=92.50 E-value=0.52 Score=46.89 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=43.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|+|+| +|+||+.+++.+. .-++++.+ +|+.. ..+.. ...++...+++++++. .+|+|+-..
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~-~~~~~------~~~g~~~~~~l~ell~------~aDvV~l~l 201 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAK-AFGMKVLA-YDPYI-SPERA------EQLGVELVDDLDELLA------RADFITVHT 201 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCC-ChhHH------HhcCCEEcCCHHHHHh------hCCEEEEcc
Confidence 5899999 6999999999876 45788765 56531 11111 1345555678999995 799888554
No 337
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=92.49 E-value=1.2 Score=42.37 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=49.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ee-eecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-VMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g-v~-v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
|||+|+|. |.-++++++.+.+.. ..+..++.+...|. .... +.. +. -+.|.+.+++ +++..++|++|-.
T Consensus 1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~d~~~l~~-~~~~~~id~vi~~ 71 (423)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLA----KNKNVAISITDIEALVE-FAKKKKIDLAVIG 71 (423)
T ss_pred CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhc----ccccccCCCCCHHHHHH-HHHHhCCCEEEEC
Confidence 69999995 888999999887653 33333334322121 1110 111 11 1356555542 2333678887755
Q ss_pred CChHhHHHHHHHHHHcCCCeE
Q 025154 114 TDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vV 134 (257)
+.-......+..+.+.|++++
T Consensus 72 ~e~~l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 72 PEAPLVLGLVDALEEAGIPVF 92 (423)
T ss_pred CchHHHHHHHHHHHHCCCeEE
Confidence 432223345566667888764
No 338
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=92.46 E-value=0.47 Score=42.33 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=48.2
Q ss_pred EEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC---
Q 025154 39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD--- 115 (257)
Q Consensus 39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~--- 115 (257)
.|.|++|-+|+.+++.+.+. +.+++.+.... ..++.-..+++++++. .++|+||.+..
T Consensus 1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~--------------~~Dl~~~~~l~~~~~~----~~~d~Vih~A~~~~ 61 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHK--------------ELDLTRQADVEAFFAK----EKPTYVILAAAKVG 61 (306)
T ss_pred CcccCCCcccHHHHHHHHhC-CCcEEEeeccc--------------cCCCCCHHHHHHHHhc----cCCCEEEEeeeeec
Confidence 37899999999999998754 56655443221 1112223456666653 46899999841
Q ss_pred --------hH--------hHHHHHHHHHHcCCC-eEE
Q 025154 116 --------AS--------TVYDNVKQATAFGMR-SVV 135 (257)
Q Consensus 116 --------p~--------~~~~~~~~a~~~Gi~-vVi 135 (257)
|. .....++.|.++++. +|.
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 62 GIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred ccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 11 134467777788864 553
No 339
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.40 E-value=0.68 Score=47.30 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=60.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC------------CC-------Ccchhhhh-----cCCCCCCee-
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------------SV-------GEDIGMVC-----DMEQPLEIP- 89 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~------------~~-------g~d~g~~~-----g~~~~~gv~- 89 (257)
..||.|+|| |..|..+++.++. -|+.=..++|.. .. |+.-.+.+ .+ ..++.
T Consensus 338 ~~kVLIvGa-GGLGs~VA~~La~-~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I--nP~v~i 413 (664)
T TIGR01381 338 QLKVLLLGA-GTLGCNVARCLIG-WGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI--FPSIQA 413 (664)
T ss_pred cCeEEEECC-cHHHHHHHHHHHH-cCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH--CCCcEE
Confidence 469999996 9999999998874 466555566621 00 22111110 11 01111
Q ss_pred -------------eec-----------CHHHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEeCCCCC
Q 025154 90 -------------VMS-----------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQ 141 (257)
Q Consensus 90 -------------v~~-----------dl~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViGTTG~s 141 (257)
+.. +++++++ ..|||+|.+. .++-.-.-..|.++++|+|.|.-||+
T Consensus 414 ~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGfd 484 (664)
T TIGR01381 414 TGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGFD 484 (664)
T ss_pred EEeeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 111 2445664 7899999994 45545566888999999998876663
No 340
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.36 E-value=1.5 Score=41.09 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=41.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.++||+| +||+|+++++.+. -=++++.. .++... .+... ..+...+ +++++++ .+|+++.-.
T Consensus 147 ktvGIiG-~GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~~~~~y~-~l~ell~------~sDii~l~~ 208 (324)
T COG1052 147 KTLGIIG-LGRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------ELGARYV-DLDELLA------ESDIISLHC 208 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------hcCceec-cHHHHHH------hCCEEEEeC
Confidence 6899999 7999999999876 66788775 443311 11111 2233434 4999996 799887654
No 341
>PRK14851 hypothetical protein; Provisional
Probab=92.29 E-value=0.76 Score=47.27 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.-||+|+|+ |..|..++..+.. .++.=.-++|
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar-~GVG~l~LvD 74 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVR-TGIGRFHIAD 74 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHH-hCCCeEEEEc
Confidence 468999996 9999999998874 4554444555
No 342
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.20 E-value=1.8 Score=39.91 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+||.|.|++|-+|+.+++.+.+ .+.++++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~-~G~~V~~~ 34 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLE-LGAEVYGY 34 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHH-CCCEEEEE
Confidence 36899999999999999999885 57887764
No 343
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.15 E-value=0.34 Score=45.77 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=24.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
.+|+|+||+|.||+.+++.+....+. +|+ ++++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 58999999999999999999754333 444 3443
No 344
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.12 E-value=0.92 Score=39.97 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=25.3
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
|.|.|++|-.|+.+++.+.+ .+.++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeC
Confidence 57999999999999998875 5788887654
No 345
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.09 E-value=0.47 Score=44.21 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=56.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--eeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
.-+++|+|+ |.||+.+++.+....+++-+.++++.. ..+..++.. ....+ +..++++++++. ++||||
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv 199 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV 199 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence 358999995 999999999987667788788887541 112222210 01123 344788998885 799999
Q ss_pred EcCChHhHHHHH-HHHHHcCCCeE
Q 025154 112 DFTDASTVYDNV-KQATAFGMRSV 134 (257)
Q Consensus 112 DFT~p~~~~~~~-~~a~~~Gi~vV 134 (257)
-.|.... ..+ ...++.|.++.
T Consensus 200 taT~s~~--p~i~~~~l~~g~~i~ 221 (326)
T TIGR02992 200 TTTPSET--PILHAEWLEPGQHVT 221 (326)
T ss_pred EecCCCC--cEecHHHcCCCcEEE
Confidence 7764221 222 23467787765
No 346
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.08 E-value=1.7 Score=44.13 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=27.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc-CCcEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGA 66 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~ 66 (257)
++||.|+|++|-+|+.+++.+.+. ++.++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 479999999999999999998865 47887754
No 347
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.06 E-value=1.8 Score=38.94 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.+|.|.|++|-+|+.+++.+.+ .+.++++...
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQ-RGYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 5899999999999999998875 5788876653
No 348
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=92.04 E-value=1 Score=43.64 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID 112 (257)
.+|||.|+| +|.=..+++..+.++ +.++..+......|. ..+. ... +.+ ..|++++++ +|+..++|.||-
T Consensus 1 ~~~kVLvlG-~G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a---~~~-~~~~~~d~e~l~~-~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVG-SGGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS---KKY-LFYDEKDYDLIED-FALKNNVDIVFV 71 (435)
T ss_pred CceEEEEEC-CcHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc---cce-eecCCCCHHHHHH-HHHHhCCCEEEE
Confidence 368999999 588888888777765 467777654222110 0011 000 111 246666543 344468997775
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCCCCC--HHH-HHHHHHHhhhcCceE
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVPHIQ--LET-VSALSAFCDKASMGC 159 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTTG~s--~e~-~~~L~~~a~~~gipv 159 (257)
...+......+....+.|++++ |.+--. .+. ....+++.++.|+|.
T Consensus 72 ~~d~~l~~~~~~~l~~~Gi~v~-gps~~~a~~e~dK~~~k~~l~~~gIpt 120 (435)
T PRK06395 72 GPDPVLATPLVNNLLKRGIKVA-SPTMEAAMIETSKMFMRYLMERHNIPG 120 (435)
T ss_pred CCChHHHHHHHHHHHHCCCcEE-CCCHHHHHHhhCHHHHHHHHHHCCcCC
Confidence 5444444455666678898865 544211 111 123466777777774
No 349
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.00 E-value=0.79 Score=44.42 Aligned_cols=83 Identities=10% Similarity=0.149 Sum_probs=48.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
-+|+|+|+ |.+|+.+++.+. .-+.+++. +|.... + . +.+ ...|+.+. ++++++. .+||+|+.|-
T Consensus 203 ktVvViG~-G~IG~~va~~ak-~~Ga~ViV-~d~d~~-R-~-~~A---~~~G~~~~-~~~e~v~------~aDVVI~atG 266 (413)
T cd00401 203 KVAVVAGY-GDVGKGCAQSLR-GQGARVIV-TEVDPI-C-A-LQA---AMEGYEVM-TMEEAVK------EGDIFVTTTG 266 (413)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HCCCEEEE-EECChh-h-H-HHH---HhcCCEEc-cHHHHHc------CCCEEEECCC
Confidence 48999995 999999998766 45777554 664211 0 1 111 12344332 3456663 6899999885
Q ss_pred hHhHHH-HHHHHHHcCCCeE
Q 025154 116 ASTVYD-NVKQATAFGMRSV 134 (257)
Q Consensus 116 p~~~~~-~~~~a~~~Gi~vV 134 (257)
...... -...+++.|.-++
T Consensus 267 ~~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 267 NKDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred CHHHHHHHHHhcCCCCcEEE
Confidence 443433 3244556665553
No 350
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.99 E-value=1 Score=39.44 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=24.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAG 65 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg 65 (257)
|+|.|+|++|.+|+.+++.+.+ .+.+++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~-~G~~V~~ 29 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVVI 29 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHH-cCCEEEE
Confidence 5899999999999999998875 5777654
No 351
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=91.94 E-value=0.3 Score=45.23 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.+.||+|.||.|.+||-+.-++..+|.+.-.+.+|-
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 357999999999999999988888888887788883
No 352
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.89 E-value=0.86 Score=42.46 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=55.4
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeecC--HHHHHhccccCCCccEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSD--LTMVLGSISQSKARAVVI 111 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~d--l~~~l~~~~~~~~~DVvI 111 (257)
+|.|.|++|..|...++++. .-+...+++..+.. ....+. ++|. .-|.+ +.+.+.++..+..+|+++
T Consensus 145 ~VLV~gaaGgVG~~aiQlAk-~~G~~~v~~~~s~~---k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 145 TVLVHGAAGGVGSAAIQLAK-ALGATVVAVVSSSE---KLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred EEEEecCCchHHHHHHHHHH-HcCCcEEEEecCHH---HHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceEEE
Confidence 69999999999999998765 44546666555321 111111 2221 11222 333332221123578888
Q ss_pred EcCChHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 112 DFTDASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
|-.-.+...+.+......|.=+.+|.++
T Consensus 217 D~vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 217 DTVGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence 8777777777666666666666677764
No 353
>PLN02240 UDP-glucose 4-epimerase
Probab=91.85 E-value=1.3 Score=40.49 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
.||.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~-~g~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLL-AGYKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence 5899999999999999999875 468877653
No 354
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=91.82 E-value=0.94 Score=42.62 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=77.7
Q ss_pred ccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee---ecCHHHHHhcccc
Q 025154 27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQ 103 (257)
Q Consensus 27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v---~~dl~~~l~~~~~ 103 (257)
..++......||.+.| +|-.|+.++-.+ +.=++++++ +|+- ...++-.++.. .-+.- .+.+..++++
T Consensus 4 igt~~~~~a~kvmLLG-SGELGKEvaIe~-QRLG~eViA-VDrY-~~APAmqVAhr---s~Vi~MlD~~al~avv~r--- 73 (394)
T COG0027 4 IGTPLRPQATKVMLLG-SGELGKEVAIEA-QRLGVEVIA-VDRY-ANAPAMQVAHR---SYVIDMLDGDALRAVVER--- 73 (394)
T ss_pred ccCCCCCCCeEEEEec-CCccchHHHHHH-HhcCCEEEE-ecCc-CCChhhhhhhh---eeeeeccCHHHHHHHHHh---
Confidence 4566677778999999 799999999655 466899986 4532 12233333321 11111 2344555654
Q ss_pred CCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe------------------------CCCC-CHHHHHHHHHHhhhcCce
Q 025154 104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASMG 158 (257)
Q Consensus 104 ~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG------------------------TTG~-s~e~~~~L~~~a~~~gip 158 (257)
.+||.+|-=. -....+.+...-+.|..||=. |+.+ -.+..+++.+++++-|.|
T Consensus 74 -ekPd~IVpEi-EAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfP 151 (394)
T COG0027 74 -EKPDYIVPEI-EAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFP 151 (394)
T ss_pred -hCCCeeeehh-hhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCC
Confidence 6888776211 111134444455666665421 1111 123456789999999999
Q ss_pred EEEccCchH
Q 025154 159 CLIAPTLSI 167 (257)
Q Consensus 159 vl~spNfSl 167 (257)
+++.|=||-
T Consensus 152 cvvKPvMSS 160 (394)
T COG0027 152 CVVKPVMSS 160 (394)
T ss_pred eeccccccc
Confidence 999999985
No 355
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.74 E-value=0.41 Score=42.94 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=40.6
Q ss_pred EEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~---~g--~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
|+|+|+.|.||..++..+.... ...=+..+|... .+ .|+...........+..++|+++.+. ++|+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence 6899977999999999887654 222234567421 11 12222221100234555778777774 79988
Q ss_pred EE
Q 025154 111 ID 112 (257)
Q Consensus 111 ID 112 (257)
|.
T Consensus 75 v~ 76 (263)
T cd00650 75 II 76 (263)
T ss_pred EE
Confidence 86
No 356
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.72 E-value=1.5 Score=41.40 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=63.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
.+|+|+|+ |..|..-++... .=+++++++-.+.. .-+++++. ..+|+.|||+-
T Consensus 183 ~~vgI~Gl-GGLGh~aVq~AK-AMG~rV~vis~~~~---------------------kkeea~~~----LGAd~fv~~~~ 235 (360)
T KOG0023|consen 183 KWVGIVGL-GGLGHMAVQYAK-AMGMRVTVISTSSK---------------------KKEEAIKS----LGADVFVDSTE 235 (360)
T ss_pred cEEEEecC-cccchHHHHHHH-HhCcEEEEEeCCch---------------------hHHHHHHh----cCcceeEEecC
Confidence 58999997 669999998655 45888886432210 12455554 47899999995
Q ss_pred hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 025154 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 161 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~ 161 (257)
-....+.+..+...+++-|+- |++..++.+-.+.|.+|.-|++
T Consensus 236 d~d~~~~~~~~~dg~~~~v~~---~a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 236 DPDIMKAIMKTTDGGIDTVSN---LAEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred CHHHHHHHHHhhcCcceeeee---ccccchHHHHHHhhcCCEEEEE
Confidence 455556666677877776652 2333445677777877765554
No 357
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=91.61 E-value=1.5 Score=41.90 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCC-cEEEEEEecCCCC----------------cc--hhhhhcCCCCCCeeee---c
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVG----------------ED--IGMVCDMEQPLEIPVM---S 92 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g----------------~d--~g~~~g~~~~~gv~v~---~ 92 (257)
|.|+.|.|+||-+|....+.+.+.|+ +++++.....+.. .| ....+... ..++.++ +
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~-~~~~~v~~G~~ 79 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDL-LPGTEVLVGEE 79 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhh-ccCceEEecHH
Confidence 57999999999999999999988877 6888876521100 00 00000000 0012222 2
Q ss_pred CHHHHHhccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154 93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 93 dl~~~l~~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG 136 (257)
.+.++.+ ..++|+|+-.-.-.+-+.-...|++.|+.+-..
T Consensus 80 ~l~e~a~----~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLA 119 (385)
T COG0743 80 GLCELAA----EDDADVVMNAIVGAAGLLPTLAAIKAGKTIALA 119 (385)
T ss_pred HHHHHHh----cCCCCEEeehhhhhcccHHHHHHHHcCCceeec
Confidence 3334433 256888887665555555566778888887764
No 358
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=1.1 Score=43.29 Aligned_cols=83 Identities=12% Similarity=-0.046 Sum_probs=63.7
Q ss_pred hHhHHHHHHHHHHcCC--CeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHHHHHhcCCCCCeEEEeccC
Q 025154 116 ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP 193 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi--~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a~~l~~~~~DiEIiE~HH 193 (257)
+.....++.++.+.|. -+|++-| |-+...++|+..|.+.++|++-+.--+==+.++.+-...+.++.||+=|+++--
T Consensus 115 TTtc~KlA~y~kkkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSG 193 (483)
T KOG0780|consen 115 TTTCTKLAYYYKKKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSG 193 (483)
T ss_pred ceeHHHHHHHHHhcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 4445566777777764 4555555 666667889999999999999876666666677777778877899999999999
Q ss_pred CCCCCC
Q 025154 194 NARVRY 199 (257)
Q Consensus 194 ~~K~Da 199 (257)
|+|.++
T Consensus 194 Rh~qe~ 199 (483)
T KOG0780|consen 194 RHKQEA 199 (483)
T ss_pred chhhhH
Confidence 998884
No 359
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.53 E-value=3.2 Score=40.54 Aligned_cols=141 Identities=21% Similarity=0.096 Sum_probs=70.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCeeee-cCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~~~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVvID 112 (257)
-||+|+|. |+-|+..++.+. ..+.+++ +.|.... . .+..++. ..+..+. ....+.+. ++|+||-
T Consensus 9 ~~v~v~G~-G~sG~~~~~~l~-~~g~~v~-~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~------~~d~vV~ 75 (468)
T PRK04690 9 RRVALWGW-GREGRAAYRALR-AHLPAQA-LTLFCNAVEAREVGALA----DAALLVETEASAQRLA------AFDVVVK 75 (468)
T ss_pred CEEEEEcc-chhhHHHHHHHH-HcCCEEE-EEcCCCcccchHHHHHh----hcCEEEeCCCChHHcc------CCCEEEE
Confidence 48999995 999999999876 5677755 3563211 1 1111221 1122222 22234443 6898774
Q ss_pred cC-ChHhHHHHHHHHHHcCCCe--------------------EEeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 113 FT-DASTVYDNVKQATAFGMRS--------------------VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 113 FT-~p~~~~~~~~~a~~~Gi~v--------------------ViGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
-. .|.. .+.++.|.+.|+|+ +||-||-+- --...|..+-+..|.+..+..| +|+
T Consensus 76 SpgI~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn--iG~ 152 (468)
T PRK04690 76 SPGISPY-RPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGV 152 (468)
T ss_pred CCCCCCC-CHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC--CCc
Confidence 32 1222 22333333333333 345454321 1123455555666677888888 455
Q ss_pred HHHHHHHHHhcCCCCCeEEEeccCCC
Q 025154 170 ILLQQAAISASFHYKNVEIVESRPNA 195 (257)
Q Consensus 170 nll~~~a~~l~~~~~DiEIiE~HH~~ 195 (257)
.++..+. .....|+-|+|.--.+
T Consensus 153 p~~~~~~---~~~~~~~~VlE~ss~q 175 (468)
T PRK04690 153 PLLEVLA---PQPAPEYWAIELSSYQ 175 (468)
T ss_pred chHHHhc---cCCCCcEEEEEecCCc
Confidence 4443221 1123577778854433
No 360
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.45 E-value=0.47 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKA 58 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (257)
.++||+|+|++|.+|..++-.+...
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc
Confidence 3789999998899999999877654
No 361
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=91.44 E-value=0.089 Score=49.55 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=75.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
|. |+|.| +|-.-+..+-.+.+.+ +++-++..+.. ..+.+.+ ....+.. ++.+++++.+ .+.|-+..-
T Consensus 3 Pg-v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~--~ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~ 70 (367)
T KOG2742|consen 3 PG-VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTK--TEAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCIS 70 (367)
T ss_pred Cc-eeEec-cChhHhhhhhhhhhcc-chHhhhhchhh--hHHHHhh---hccchhhccccchhhhcc----CCcceeEec
Confidence 45 99999 7999999887776555 88888776521 1111111 1234444 5588888863 456644334
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~ 154 (257)
-.|..+.+.+..++..|++||+..+--+.++.+.+.++++.
T Consensus 71 lpp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s 111 (367)
T KOG2742|consen 71 LPPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS 111 (367)
T ss_pred cCCccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhc
Confidence 46777889999999999999999988666777778777655
No 362
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=91.44 E-value=0.45 Score=45.22 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=62.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcc----hhhhh-cCCCCCCeee----
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGED----IGMVC-DMEQPLEIPV---- 90 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d----~g~~~-g~~~~~gv~v---- 90 (257)
-.|.|+|| |..|.-.+..++ ..++-=.|++|.+ ..|+. +...+ .......|..
T Consensus 67 s~VLVVGa-GGLGcPa~~YLa-aaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~ 144 (427)
T KOG2017|consen 67 SSVLVVGA-GGLGCPAAQYLA-AAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF 144 (427)
T ss_pred ccEEEEcc-CCCCCHHHHHHH-HcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence 47999997 999999998876 4577777888732 11111 11111 1111112222
Q ss_pred --ecCHHHHHhccccCCCccEEEEcC-ChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 91 --MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 91 --~~dl~~~l~~~~~~~~~DVvIDFT-~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
.++..+++. ..|||.|+| ++..-+-.-..|.-.|+|+|+|.-
T Consensus 145 L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa 189 (427)
T KOG2017|consen 145 LSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA 189 (427)
T ss_pred ccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence 235566674 789999999 466667777899999999999975
No 363
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.43 E-value=1.3 Score=40.73 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.0
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
+|.|+|++|-+|+.+++.+.+ .+.++++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLE-KGYEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence 799999999999999998875 478888754
No 364
>PRK05884 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.92 Score=39.22 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=25.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
||+.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 1 m~vlItGas~giG~~ia~~l~~-~g~~v~~~ 30 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRN-DGHKVTLV 30 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHH-CCCEEEEE
Confidence 4899999999999999998874 57777654
No 365
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=91.41 E-value=0.99 Score=42.08 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=24.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
||+|+|++|.+|..++-.+....-..=...+|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 799999889999999988775543333345674
No 366
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.32 E-value=0.64 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=25.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..||+|+|+ |..|..++-.+...+-..=...+|.
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 369999997 9999999988876544433446774
No 367
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=91.20 E-value=1.4 Score=39.11 Aligned_cols=95 Identities=9% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeee---cCHHHHHhccccCCCcc-EEEEcC---ChH-------
Q 025154 52 VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM---SDLTMVLGSISQSKARA-VVIDFT---DAS------- 117 (257)
Q Consensus 52 ~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~---~dl~~~l~~~~~~~~~D-VvIDFT---~p~------- 117 (257)
++.+...-++-+.|++-+... +..+.++ ++.+++.+ ..+| +.+|.| +|+
T Consensus 58 Ikai~~~v~vPIIGIiKrd~~------------~s~v~ITptlkeVd~L~~-----~Ga~IIA~DaT~R~RP~~~~~~~i 120 (229)
T COG3010 58 IKAIRAVVDVPIIGIIKRDYP------------DSPVRITPTLKEVDALAE-----AGADIIAFDATDRPRPDGDLEELI 120 (229)
T ss_pred HHHHHhhCCCCeEEEEecCCC------------CCCceecccHHHHHHHHH-----CCCcEEEeecccCCCCcchHHHHH
Confidence 344555666777777754321 1223333 45556665 4677 467777 466
Q ss_pred --------------hHHHHHHHHHHcCCCeEEeCC--CCCH-------HHHHHHHHHhhhcCceEEEccCc
Q 025154 118 --------------TVYDNVKQATAFGMRSVVYVP--HIQL-------ETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 118 --------------~~~~~~~~a~~~Gi~vViGTT--G~s~-------e~~~~L~~~a~~~gipvl~spNf 165 (257)
...+-...|.+.|..+| ||| |++. .+++.++++++ .|.+++-=.+|
T Consensus 121 ~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-GTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~ 189 (229)
T COG3010 121 ARIKYPGQLAMADCSTFEEGLNAHKLGFDII-GTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRY 189 (229)
T ss_pred HHhhcCCcEEEeccCCHHHHHHHHHcCCcEE-ecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCC
Confidence 22345567888999975 898 7654 45667777776 66777654444
No 368
>PRK06153 hypothetical protein; Provisional
Probab=91.19 E-value=1 Score=43.39 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.||+|+|+ |..|..++..++...--+|+ ++|
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD 207 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFD 207 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EEC
Confidence 59999996 99999999999876544444 566
No 369
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.18 E-value=1.6 Score=38.88 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.1
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
||.|.|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-SGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-CCCeEEEE
Confidence 689999999999999998875 46777653
No 370
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.16 E-value=0.67 Score=44.42 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=40.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|||+| +|+||+.+++.+. .=++++.+ +|+... +.+ .. ..+.++++++. .+|+|+--+
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~-a~G~~V~~-~dp~~~--~~~--------~~-~~~~~L~ell~------~sDiI~lh~ 175 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLE-ALGIKTLL-CDPPRA--DRG--------DE-GDFRSLDELVQ------EADILTFHT 175 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHH-HCCCEEEE-ECCccc--ccc--------cc-cccCCHHHHHh------hCCEEEEeC
Confidence 35899999 5999999999876 56898875 565321 100 00 12467888885 688877443
No 371
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.16 E-value=1.5 Score=45.23 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
....||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus 302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~l-~d~ 336 (699)
T TIGR02440 302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVRI-KDI 336 (699)
T ss_pred ccccEEEEECC-cHHHHHHHHHHHHHcCCeEEE-EeC
Confidence 34568999996 999999998776556887763 563
No 372
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.12 E-value=1.9 Score=39.03 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=51.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec---CHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS---DLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~---dl~~~l~~~~~~~~~DV 109 (257)
-+|.|.|+.|.+|+..++++. ..+.++++...+.. ....+. .+|+ ..+. ++.+.+... .+..+|+
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk-~~G~~Vi~~~~s~~---~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~-~~~gvdv 210 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAK-LKGCKVVGAAGSDE---KVAYLK----KLGFDVAFNYKTVKSLEETLKKA-SPDGYDC 210 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHH----HcCCCEEEeccccccHHHHHHHh-CCCCeEE
Confidence 379999988999999998655 56888776554321 111111 1222 1122 333333211 1135899
Q ss_pred EEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++|++-.+.....+......|.=+.+|..
T Consensus 211 v~d~~G~~~~~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 211 YFDNVGGEFSNTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred EEECCCHHHHHHHHHHhCcCcEEEEecch
Confidence 99988655554444444455555556653
No 373
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=91.11 E-value=0.54 Score=43.19 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
|||.|.|++|-+|+.+++.+.+. +.+.+-.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence 58999999999999999999865 433333344
No 374
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.09 E-value=0.69 Score=43.37 Aligned_cols=64 Identities=25% Similarity=0.234 Sum_probs=44.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-..|||+| +|++|+.+++.+. .=++++.+ +|+.. .++... ..++.-.+++++++. .+|+++-..
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~-afgm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLK-AFGMKVIG-YDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL 205 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCeEEE-ECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence 35899999 5999999998765 56888885 56521 222211 234445688999996 799887554
No 375
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.02 E-value=0.66 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=25.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (257)
|||+|+|+ |.+|..++..+....-..-+..+|..
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 58999996 99999999887755433445577853
No 376
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.00 E-value=1 Score=43.86 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=57.0
Q ss_pred HhHHHHHHHHHHcC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc-CchHHHHHHHHHHHHhcCCCCCeEEEeccCC
Q 025154 117 STVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP-TLSIGSILLQQAAISASFHYKNVEIVESRPN 194 (257)
Q Consensus 117 ~~~~~~~~~a~~~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp-NfSlGvnll~~~a~~l~~~~~DiEIiE~HH~ 194 (257)
..+-.++.+..+.| +++++.+--|-+..+++|+.++++.++|++-.. +-+ =|.+..+..+.+....||+=|+.+-=|
T Consensus 115 Tt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~-Pv~Iak~al~~ak~~~~DvvIvDTAGR 193 (451)
T COG0541 115 TTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD-PVEIAKAALEKAKEEGYDVVIVDTAGR 193 (451)
T ss_pred hHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC-HHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 33445555555555 556666767888889999999999999888541 111 123466666666656899999998888
Q ss_pred CCCCC
Q 025154 195 ARVRY 199 (257)
Q Consensus 195 ~K~Da 199 (257)
...|.
T Consensus 194 l~ide 198 (451)
T COG0541 194 LHIDE 198 (451)
T ss_pred ccccH
Confidence 88883
No 377
>PRK06180 short chain dehydrogenase; Provisional
Probab=90.94 E-value=1.9 Score=38.27 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=49.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
+.+|.|+|++|.+|+.+++.+.+ .+.+++++ ++.. .....+. +... .... +..|+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~-~r~~--~~~~~l~---------------~~~~-----~~~~~~~~D~ 59 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGT-VRSE--AARADFE---------------ALHP-----DRALARLLDV 59 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHh-CcCEEEEE-eCCH--HHHHHHH---------------hhcC-----CCeeEEEccC
Confidence 35799999999999999998875 58887654 3321 1111111 0000 0121 34678
Q ss_pred CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
+.++.....+..+.+. ++.+|+=+.|
T Consensus 60 ~d~~~~~~~~~~~~~~~~~~d~vv~~ag 87 (277)
T PRK06180 60 TDFDAIDAVVADAEATFGPIDVLVNNAG 87 (277)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 8888777776665543 4677765554
No 378
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.92 E-value=1.5 Score=42.51 Aligned_cols=116 Identities=19% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcCC-------CCCCeeeecCHHHHHhcc
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDME-------QPLEIPVMSDLTMVLGSI 101 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~~~g~~-------~~~gv~v~~dl~~~l~~~ 101 (257)
...||+|-| +|..|+..++.+.+. +.+|+++-|+. ..|-|...++... ...+...... ++++.
T Consensus 206 ~G~rVaVQG-~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~-- 280 (411)
T COG0334 206 EGARVAVQG-FGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE-- 280 (411)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc--
Confidence 347999999 699999999988765 99999998853 2355543332110 0112222222 56665
Q ss_pred ccCCCccEEEEcCChHhH-HHHHHHHHHcCCCeEEeCC-C-CCHHHHHHHHHHhhhcCceEEEccCch
Q 025154 102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 102 ~~~~~~DVvIDFT~p~~~-~~~~~~a~~~Gi~vViGTT-G-~s~e~~~~L~~~a~~~gipvl~spNfS 166 (257)
.++||++=+...... .+++.... ..+|.+-. | .++|..+.+. ++ .|++.|-+-
T Consensus 281 ---~~cDIl~PcA~~n~I~~~na~~l~---ak~V~EgAN~P~t~eA~~i~~---er---GIl~~PD~l 336 (411)
T COG0334 281 ---VDCDILIPCALENVITEDNADQLK---AKIVVEGANGPTTPEADEILL---ER---GILVVPDIL 336 (411)
T ss_pred ---ccCcEEcccccccccchhhHHHhh---hcEEEeccCCCCCHHHHHHHH---HC---CCEEcChhh
Confidence 479998865543332 34444332 23777654 3 3443333333 33 577777553
No 379
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=90.92 E-value=0.73 Score=44.40 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=83.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--eeec---CHHHHHhccccCCCccE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMS---DLTMVLGSISQSKARAV 109 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v~~---dl~~~l~~~~~~~~~DV 109 (257)
+-+|.+.| +|.+.+-++..+.++.+.++.-+.+.. .++.++........| -+.+ .++... .+-|+
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~~~~~~av~ldv~~~~~~L~~~v------~~~D~ 71 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVKGINIKAVSLDVADEELALRKEV------KPLDL 71 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhH---HHHHHHhcCCCccceEEEccchHHHHHhhh------cccce
Confidence 35799999 599999999999999999988766532 233333311000011 1111 222333 36799
Q ss_pred EEEcCChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHH
Q 025154 110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 169 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGv 169 (257)
+|--+....+.-.++.|+.++.++| |+.|-..+.++|++.+..+|+-++=---.=.|+
T Consensus 72 viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGi 129 (445)
T KOG0172|consen 72 VISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGI 129 (445)
T ss_pred eeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcch
Confidence 9977777777888899999999987 566777789999999999887766322334444
No 380
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.87 E-value=2.1 Score=37.19 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=49.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHH-HHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTM-VLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~-~l~~~~~~~~~DVvIDF 113 (257)
.||.|+|+ |+||...++.+.+ .+.+++ ++++. ....+.+++. ...+.. ...+++ .+ ..+|+||-.
T Consensus 11 k~vLVIGg-G~va~~ka~~Ll~-~ga~V~-VIs~~-~~~~l~~l~~---~~~i~~~~~~~~~~~l------~~adlViaa 77 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLK-YGAHIV-VISPE-LTENLVKLVE---EGKIRWKQKEFEPSDI------VDAFLVIAA 77 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHH-CCCeEE-EEcCC-CCHHHHHHHh---CCCEEEEecCCChhhc------CCceEEEEc
Confidence 48999996 9999999988775 456655 44442 2223333331 112222 122222 23 378998888
Q ss_pred CChHhHHHHHHHHHHcCCCeEE
Q 025154 114 TDASTVYDNVKQATAFGMRSVV 135 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vVi 135 (257)
|.-+.....+....+.++.+-+
T Consensus 78 T~d~elN~~i~~~a~~~~lvn~ 99 (202)
T PRK06718 78 TNDPRVNEQVKEDLPENALFNV 99 (202)
T ss_pred CCCHHHHHHHHHHHHhCCcEEE
Confidence 8655555544444466765544
No 381
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.83 E-value=1.9 Score=37.47 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=48.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
|+|.|+|++|..|+.+++.+.+ .+.+++. +++.. ..+..+ .+.+. .++. +-.|++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~---------------~~~~~-----~~~~~~~~Dl~ 56 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQ-QGHKVIA-TGRRQ--ERLQEL---------------KDELG-----DNLYIAQLDVR 56 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH---------------HHHhc-----cceEEEEecCC
Confidence 5799999999999999999875 5788765 44321 111111 01111 1222 346788
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
.++...+.+....+. ++.+|+-..|
T Consensus 57 ~~~~i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 57 NRAAIEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 887776666555442 5777775554
No 382
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.82 E-value=5.7 Score=40.17 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=69.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecC--HHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD--LTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~d--l~~~l~~~~~~~~~DVvI 111 (257)
..+|.|+| +||+|+.+++.+. ..+.+++ ++|.+. +.+..+. +.|.++ +.| -.+++++ +.-.++|++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~-~~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~-agi~~A~~vv 469 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLM-ANKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLELLRA-AGAEKAEAIV 469 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHH-hCCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHHHHHh-cCCccCCEEE
Confidence 46899999 5999999999876 4567765 466431 1122221 234433 222 1223321 0113678766
Q ss_pred EcC-ChHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHH
Q 025154 112 DFT-DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 172 (257)
Q Consensus 112 DFT-~p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll 172 (257)
-.+ .++.....+..+.+.. ++++. . --++++.++|++ .|+-.++-.+|--+..+.
T Consensus 470 ~~~~d~~~n~~i~~~~r~~~p~~~Iia-R-a~~~~~~~~L~~----~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 470 ITCNEPEDTMKIVELCQQHFPHLHILA-R-ARGRVEAHELLQ----AGVTQFSRETFSSALELG 527 (601)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCCeEEE-E-eCCHHHHHHHHh----CCCCEEEccHHHHHHHHH
Confidence 554 4555556666666654 34443 2 244566666755 566777777776666653
No 383
>PRK06953 short chain dehydrogenase; Provisional
Probab=90.82 E-value=1.6 Score=37.23 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=47.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
|.++.|+|++|.+|+.+++.+.+ .+.+++.+ ++.. .+..++ .. .... +..|+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~-~r~~--~~~~~~------------------~~-----~~~~~~~~D~ 53 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIAT-ARDA--AALAAL------------------QA-----LGAEALALDV 53 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHh-CCCEEEEE-ECCH--HHHHHH------------------Hh-----ccceEEEecC
Confidence 45789999999999999998874 58887664 4321 111111 10 0111 45677
Q ss_pred CChHhHHHHHHHHHHcCCCeEEeCCCC
Q 025154 114 TDASTVYDNVKQATAFGMRSVVYVPHI 140 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~Gi~vViGTTG~ 140 (257)
+.++.....+......++.+|+=+.|.
T Consensus 54 ~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 54 ADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 777666554443333357777766654
No 384
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=90.74 E-value=2.3 Score=41.75 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=54.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
-++.|+|+ |.-|+.+++.+.+++ +++++|.+|.+..+ .. -.|+|+..+.+++.. ..+....|++|-.
T Consensus 147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~---~~------i~gvPVlg~~d~l~~-~~~~~~v~vIIAi 215 (476)
T PRK15204 147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASD---AE------INMLPVIKDTEIIWD-LNRTGDVHYILAY 215 (476)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccc---cc------cCCCcccCCHHHHHH-HHHhCCCcEEEEe
Confidence 47999995 999999999887654 78999999853211 11 236777666543311 0011356765543
Q ss_pred CC--hHhHHHHHHHHHHcCCC
Q 025154 114 TD--ASTVYDNVKQATAFGMR 132 (257)
Q Consensus 114 T~--p~~~~~~~~~a~~~Gi~ 132 (257)
.. .+...+.++.+.+.|+.
T Consensus 216 p~~~~~~r~~il~~l~~~gv~ 236 (476)
T PRK15204 216 EYTELEKTHFWLRELSKHHCR 236 (476)
T ss_pred CcCcHHHHHHHHHHHhhcCCe
Confidence 32 23445778888888885
No 385
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.73 E-value=2.5 Score=37.18 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=49.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
..+|.|.|++|++|+.+++.+.+..+.+++.. ++.. .....++. +++... . ..++. +-.|.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~-~r~~-~~~~~~~~--------------~~l~~~-~-~~~v~~~~~D~ 69 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLA-ALPD-DPRRDAAV--------------AQMKAA-G-ASSVEVIDFDA 69 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE-eCCc-chhHHHHH--------------HHHHhc-C-CCceEEEEecC
Confidence 45799999999999999999887656777654 3321 01011110 111110 0 00111 34677
Q ss_pred CChHhHHHHHHHHHHc-CCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAF-GMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~-Gi~vViGTTG 139 (257)
+.++...+.++.+.+. ++.+++-..|
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 70 LDTDSHPKVIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred CChHHHHHHHHHHHhcCCCCEEEEeee
Confidence 7777777766666553 5776664444
No 386
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.72 E-value=1.1 Score=42.00 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=56.1
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCeeeec---C-HHHHHhccccCCCccEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMS---D-LTMVLGSISQSKARAVVI 111 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~~~g~~~~~gv~v~~---d-l~~~l~~~~~~~~~DVvI 111 (257)
+|+|+|+ |-+|-..+..+.. -+..-+-++|....-.+.. ++.+ ..+.+.. + .+++.+ +..+..+|++|
T Consensus 171 ~V~V~Ga-GpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g----~~~~~~~~~~~~~~~~~~-~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGA-GPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGG----ADVVVNPSEDDAGAEILE-LTGGRGADVVI 243 (350)
T ss_pred EEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCC----CeEeecCccccHHHHHHH-HhCCCCCCEEE
Confidence 7999996 9999998876554 4544444557431011111 1111 1111111 1 111211 11123599999
Q ss_pred EcC-ChHhHHHHHHHHHHcCCCeEEeCCCCC
Q 025154 112 DFT-DASTVYDNVKQATAFGMRSVVYVPHIQ 141 (257)
Q Consensus 112 DFT-~p~~~~~~~~~a~~~Gi~vViGTTG~s 141 (257)
|+| .+.+...-+..+...|.=+++|+++-.
T Consensus 244 e~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVGSPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 999 566666777777788888889999654
No 387
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=90.70 E-value=1.5 Score=40.12 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=53.2
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEE
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVI 111 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvI 111 (257)
..+.++.|.||++++|+++++.++ ..++.|+-+..+. ....++. .++++... -.++ .-+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLA-RRGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEEC
Confidence 345689999999999999999887 4577777544321 0111111 11111110 1234 257
Q ss_pred EcCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 112 DFTDASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 112 DFT~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
|.|.|+..........+. .+.++|=--|
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 888888888777776666 6777765433
No 388
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.66 E-value=1.3 Score=41.01 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=27.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.+||.|+|++|-+|+.+++.+.+ .+.++++..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 35899999999999999999875 5788887654
No 389
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=90.64 E-value=2.8 Score=40.03 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=56.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
|||+|+|. |.=...+++.+.++++...+.+ ++...|.. ... + .+.+ +.|.+++++ +++..++|++|-.+
T Consensus 1 ~kvliiG~-G~~~~~l~~~l~~~~~~~~i~~-~~~n~g~~--~~~----~-~~~~~~~d~~~l~~-~~~~~~id~vi~~~ 70 (420)
T PRK00885 1 MKVLVIGS-GGREHALAWKLAQSPLVEKVYV-APGNAGTA--LLA----E-NVVIDVTDIEALVA-FAKEEGIDLTVVGP 70 (420)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEE-eCCCHHHH--hhc----c-ccCCCCCCHHHHHH-HHHHhCCCEEEECC
Confidence 69999995 7655667777777766544333 33221110 000 1 1111 356666543 23335789877443
Q ss_pred ChHhHHHHHHHHHHcCCCeEEeCCC--CC-HHHHHHHHHHhhhcCce
Q 025154 115 DASTVYDNVKQATAFGMRSVVYVPH--IQ-LETVSALSAFCDKASMG 158 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~vViGTTG--~s-~e~~~~L~~~a~~~gip 158 (257)
...........+.+.|++++ |.+- .. .......+++.++.|+|
T Consensus 71 e~~l~~~~~~~l~~~gi~~~-g~~~~~~~~~~dK~~~k~~l~~~gip 116 (420)
T PRK00885 71 EAPLVAGIVDAFRAAGLPIF-GPTKAAAQLEGSKAFAKDFMARYGIP 116 (420)
T ss_pred chHHHHHHHHHHHHCCCcEE-CcCHHHHHHHcCHHHHHHHHHHcCCC
Confidence 32333455566677888865 4331 00 01112345555565665
No 390
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=90.61 E-value=1.8 Score=39.50 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=61.5
Q ss_pred ccceeeeeccccccccccCccccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 025154 4 LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME 83 (257)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~ 83 (257)
.||-.--|..-||+..-.+.--|-+..-.+..-||.|.|+.|..|..+++++...-+-+-|-..|..+ +-..+...+
T Consensus 13 ag~~~~~R~~~Isp~~v~~~A~FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~G 89 (366)
T KOG2774|consen 13 AGCWLPVRRNGISPLPVDPLARFHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDVG 89 (366)
T ss_pred CcccccccccCCCcccCCcccccccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---CchhhcccC
Confidence 35655566666665554444333333334455689999999999999999998877766554444211 011111110
Q ss_pred CC---CCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 84 QP---LEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 84 ~~---~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
+ .++.-+.+++++.-. ...|-+|.||
T Consensus 90 -PyIy~DILD~K~L~eIVVn----~RIdWL~HfS 118 (366)
T KOG2774|consen 90 -PYIYLDILDQKSLEEIVVN----KRIDWLVHFS 118 (366)
T ss_pred -CchhhhhhccccHHHhhcc----cccceeeeHH
Confidence 1 123335677776543 6789999997
No 391
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.58 E-value=1.5 Score=38.32 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=50.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
|.++.|+|++|.+|+.+++.+.+ .+.+++. +++.. ....++. +.+.. ...+ +.+|+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~----~~~~~~~~D~ 57 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAA-EGWRVGA-YDINE--AGLAALA---------------AELGA----GNAWTGALDV 57 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHH-CCCeEEE-EeCCH--HHHHHHH---------------HHhcC----CceEEEEecC
Confidence 45699999999999999998875 5777664 34321 1111110 11100 1222 45788
Q ss_pred CChHhHHHHHHHHHH---cCCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATA---FGMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~---~Gi~vViGTTG 139 (257)
+.++...+.+..+.+ .++.+|+=+.|
T Consensus 58 ~~~~~v~~~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 58 TDRAAWDAALADFAAATGGRLDVLFNNAG 86 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 888887777766654 36777776655
No 392
>PRK06988 putative formyltransferase; Provisional
Probab=90.54 E-value=0.64 Score=43.21 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=45.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC--CCCc----chhhhhcCCCCCCeeeec--CH-----HHHHhcc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGSI 101 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~----d~g~~~g~~~~~gv~v~~--dl-----~~~l~~~ 101 (257)
||||++.| ++.+|....+.+.+ .++++++++..+ ..+. ++.+++ .+.|++++. ++ .+.+.+
T Consensus 2 ~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~- 75 (312)
T PRK06988 2 KPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA- 75 (312)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh-
Confidence 68999999 79999999998875 578999888642 1111 233333 356777643 22 222332
Q ss_pred ccCCCccEEEEcC
Q 025154 102 SQSKARAVVIDFT 114 (257)
Q Consensus 102 ~~~~~~DVvIDFT 114 (257)
.++|++|-+.
T Consensus 76 ---~~~Dliv~~~ 85 (312)
T PRK06988 76 ---AAPDFIFSFY 85 (312)
T ss_pred ---cCCCEEEEeh
Confidence 5899877664
No 393
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.54 E-value=0.64 Score=43.15 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
||+|+|+ |.+|..++-.+...+-+.=...+|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 7999997 9999999988776544443446774
No 394
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.40 E-value=1.4 Score=43.96 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=42.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|+|+| +|+||+.+++.+. .-++++.+ +|+... .+.. ...++... ++++++. .+|+|+-..
T Consensus 140 gktvgIiG-~G~IG~~vA~~l~-~fG~~V~~-~d~~~~-~~~~------~~~g~~~~-~l~ell~------~aDiV~l~l 202 (526)
T PRK13581 140 GKTLGIIG-LGRIGSEVAKRAK-AFGMKVIA-YDPYIS-PERA------AQLGVELV-SLDELLA------RADFITLHT 202 (526)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-hCCCEEEE-ECCCCC-hhHH------HhcCCEEE-cHHHHHh------hCCEEEEcc
Confidence 35899999 5999999999876 45888764 564211 1111 12344444 8999985 689877554
No 395
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.40 E-value=0.48 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
|+||.|+||+|.+|+.+++.+.+ .+.++.+...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEec
Confidence 57999999999999999998875 5788877654
No 396
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=90.39 E-value=1.9 Score=41.80 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=49.9
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCHHHHHhccccCCCccEEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVvID 112 (257)
.+|||.|+| +|.==.+++..+.+++....+.+. +...|.. ... ....+.+ ..|.+++++ .++..++|.||-
T Consensus 3 ~~~kvLviG-~g~rehal~~~~~~~~~~~~~~~~-pgn~g~~--~~~---~~~~~~~~~~d~~~l~~-~a~~~~iD~Vv~ 74 (426)
T PRK13789 3 VKLKVLLIG-SGGRESAIAFALRKSNLLSELKVF-PGNGGFP--DDE---LLPADSFSILDKSSVQS-FLKSNPFDLIVV 74 (426)
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEE-CCchHHh--ccc---cccccCcCcCCHHHHHH-HHHHcCCCEEEE
Confidence 468999999 477777788888877755433332 2221110 000 0001112 356666553 334467997773
Q ss_pred cCChHhHHHHHHHHHHcCCCeE
Q 025154 113 FTDASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vV 134 (257)
...-......+..+.+.|+|++
T Consensus 75 g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 75 GPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred CCchHHHHHHHHHHHHcCCCcC
Confidence 3222222345566677888854
No 397
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.39 E-value=0.7 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA 58 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~ 58 (257)
++||+|+||+|++|..++-.+...
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 699999998899999999877644
No 398
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=90.32 E-value=1.9 Score=43.78 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred ceEEEEcCCCh---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
--|+|+||+++ .|..+.+.+.+..+=++..+ .+. ..++ .|++.|++..++-+ .+|+.|-
T Consensus 11 ~svavigas~~~~~vg~~i~~nL~~~g~g~i~PV-np~-----~~~v------~G~~ay~s~~~lp~------~~dlav~ 72 (598)
T COG1042 11 KSIAVIGASERPGKLGYEILRNLLEYGQGKIYPV-NPK-----YDEV------LGVKAYTSVADLPD------APDLAVI 72 (598)
T ss_pred ceEEEeeccCCcchhHHHHHHHHHhcCCCceEec-Ccc-----cccc------ccccccchHhhCCC------CCCeeEE
Confidence 35999999876 67778887775543333332 121 1122 36778889888764 7999998
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCC-CCCH------HHHHHHHHHhhhcCceEEEccCch
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQL------ETVSALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTT-G~s~------e~~~~L~~~a~~~gipvl~spNfS 166 (257)
.+.+..+.+.++.|-+.|+..++--+ ||.+ +-.+++.++|+++++. ++.||--
T Consensus 73 ~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r-ligPn~~ 132 (598)
T COG1042 73 VVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR-IIGPNCL 132 (598)
T ss_pred EechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce-Eeccccc
Confidence 99999999999999999987765544 6643 1223455578877764 4457743
No 399
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=90.29 E-value=1.4 Score=38.03 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=49.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCc-cEEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVvIDF 113 (257)
|.+|.|.|++|.+|+.+++.+.+ .+.+++....+.. +....+ .+.+.. ...++ -+..|.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~-~g~~v~~~~~~~~--~~~~~~---------------~~~~~~--~~~~~~~~~~Dl 61 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAA-RGWSVGINYARDA--AAAEET---------------ADAVRA--AGGRACVVAGDV 61 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHH---------------HHHHHh--cCCcEEEEEecc
Confidence 45899999999999999998875 5778765443321 001111 011110 00011 134677
Q ss_pred CChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 114 TDASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
+.++...+.+..+.+. ++.+|+-..|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~id~li~~ag 89 (248)
T PRK06947 62 ANEADVIAMFDAVQSAFGRLDALVNNAG 89 (248)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 8888877777665542 4677876655
No 400
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=90.21 E-value=1.6 Score=40.48 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=25.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
|||+|+|++|..|..++..+...+-. +|+. +|.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~l-vd~ 34 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINL-ISR 34 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EEC
Confidence 69999998899999999988765433 4554 343
No 401
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.14 E-value=0.52 Score=45.70 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=26.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
++||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~ 77 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSK-RGYEVAIV 77 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH-CCCeEEEE
Confidence 57899999999999999999885 47887754
No 402
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.12 E-value=2 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=25.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH 70 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~ 70 (257)
-+|.|.|++|-.|+++.+.+++. +-+-+-.+++.
T Consensus 251 K~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~ 284 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRD 284 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCc
Confidence 48999999999999999999865 33333356643
No 403
>COG2403 Predicted GTPase [General function prediction only]
Probab=90.07 E-value=1.4 Score=42.29 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=90.9
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCC-c-ch--hhhhcCCCCCCeeee-----cCHHHHHhcccc
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-E-DI--GMVCDMEQPLEIPVM-----SDLTMVLGSISQ 103 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~-d~--g~~~g~~~~~gv~v~-----~dl~~~l~~~~~ 103 (257)
.++.||.+.|+.|+==..--.++...+.+++++.......| . .. .++.|...+.|+|++ ++++.++.+
T Consensus 4 ~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire--- 80 (449)
T COG2403 4 KARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE--- 80 (449)
T ss_pred CCceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH---
Confidence 45789999998666544444445667888888776521111 0 00 112222236788885 346666665
Q ss_pred CCCcc-EEEEcC--ChHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE--EccCchHHHH-HHHHHHH
Q 025154 104 SKARA-VVIDFT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL--IAPTLSIGSI-LLQQAAI 177 (257)
Q Consensus 104 ~~~~D-VvIDFT--~p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl--~spNfSlGvn-ll~~~a~ 177 (257)
.++| +|+|.| +++....++...+..|..... |-+-+ .+..+ ++ |++ .+.-.-.|=. +-..+++
T Consensus 81 -~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~----~gP~e--t~~~~-ek---PviaV~atrtg~GKsaVS~~v~r 149 (449)
T COG2403 81 -KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKE----LGPKE--TMLKL-EK---PVIAVTATRTGVGKSAVSRYVAR 149 (449)
T ss_pred -cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEE----eCccH--Hhhhh-cC---ceEEEEEeccccchhHHHHHHHH
Confidence 7999 999999 688999999999999987763 33211 12211 22 444 3333333333 3344455
Q ss_pred HhcCCCCCeEEEeccCCCCCCCCCccHHHH
Q 025154 178 SASFHYKNVEIVESRPNARVRYMTRTLISM 207 (257)
Q Consensus 178 ~l~~~~~DiEIiE~HH~~K~DapSGTa~~l 207 (257)
.|...+|.+=++-+---..-|-+-.|-..+
T Consensus 150 ~l~ergyrv~vVrhPmiy~~~~ieitve~~ 179 (449)
T COG2403 150 LLRERGYRVCVVRHPMIYRGDRIEITVERL 179 (449)
T ss_pred HHHHcCCceEEEecCceecCCchhhhHHHH
Confidence 555456666555432222223344554444
No 404
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.87 E-value=0.24 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHh
Q 025154 36 IKVIINGAVKEIGRAAVIAVTK 57 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~ 57 (257)
.||.++|| |..|-.+++++..
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~ 46 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVX 46 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHH
Confidence 69999997 9999999998864
No 405
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.87 E-value=1.5 Score=40.56 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
+||+|+|+ |.||..++..++...-.+ +-.+|.
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi 33 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDV 33 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 59999996 999999998877543236 556774
No 406
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.84 E-value=2.5 Score=38.42 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=52.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCCh
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA 116 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~p 116 (257)
+|+|+|+ |.+|...++.+. ..+.+.+.+++... ... +.++ ... +.+ .++... ..+|++||++--
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak-~~G~~~v~~~~~~~--~rl-~~a~---~~~--~i~-~~~~~~-----~g~Dvvid~~G~ 210 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTK-AAGGSPPAVWETNP--RRR-DGAT---GYE--VLD-PEKDPR-----RDYRAIYDASGD 210 (308)
T ss_pred cEEEECC-CHHHHHHHHHHH-HcCCceEEEeCCCH--HHH-Hhhh---hcc--ccC-hhhccC-----CCCCEEEECCCC
Confidence 6999995 999999998665 45787666666421 001 1111 111 111 111111 368999999864
Q ss_pred -HhHHHHHHHHHHcCCCeEEeCCC
Q 025154 117 -STVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 117 -~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
......+......|.=+++|.++
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~~ 234 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFYT 234 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeecC
Confidence 44455566666777777788653
No 407
>PLN02602 lactate dehydrogenase
Probab=89.82 E-value=1 Score=42.62 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=25.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.||+|+|+ |.+|..++-.+...+-..=...+|.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 69999996 9999999988775544433446774
No 408
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.75 E-value=6.7 Score=34.35 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=25.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++...
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR-AGYRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEe
Confidence 4699999999999999998875 578876543
No 409
>PRK07578 short chain dehydrogenase; Provisional
Probab=89.71 E-value=2.4 Score=35.53 Aligned_cols=29 Identities=41% Similarity=0.589 Sum_probs=24.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
|++.|+|++|.+|+.+++.+.+. .+++..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~ 29 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITA 29 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEE
Confidence 47999999999999999998765 565543
No 410
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.69 E-value=1.5 Score=42.02 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=39.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|||+| +|.||+.+++.+. .-++++.+ +|+..... . +..-+.++++++. .+|+|+-..
T Consensus 117 ktvGIIG-~G~IG~~va~~l~-a~G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh~ 175 (381)
T PRK00257 117 RTYGVVG-AGHVGGRLVRVLR-GLGWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLHT 175 (381)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEeC
Confidence 5899999 5999999999876 46888865 56532110 0 1112457888885 688877443
No 411
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.69 E-value=2.2 Score=42.10 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=41.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|+|+| +|++|+.+++.+. .-+++++ +++.... + ..... ..|+. +.++++++. .+|+||..+
T Consensus 254 GKtVgVIG-~G~IGr~vA~rL~-a~Ga~Vi-V~e~dp~-~-a~~A~----~~G~~-~~~leell~------~ADIVI~at 317 (476)
T PTZ00075 254 GKTVVVCG-YGDVGKGCAQALR-GFGARVV-VTEIDPI-C-ALQAA----MEGYQ-VVTLEDVVE------TADIFVTAT 317 (476)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEE-EEeCCch-h-HHHHH----hcCce-eccHHHHHh------cCCEEEECC
Confidence 45899999 5999999999876 4577754 4543210 0 00000 12333 246788875 799999876
Q ss_pred Ch
Q 025154 115 DA 116 (257)
Q Consensus 115 ~p 116 (257)
-.
T Consensus 318 Gt 319 (476)
T PTZ00075 318 GN 319 (476)
T ss_pred Cc
Confidence 43
No 412
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=89.65 E-value=1.7 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.6
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
..+|.|.|++|.+|+.+++.+.+ .+.++++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLF-RGYTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 46899999999999999998875 578876644
No 413
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.60 E-value=1.3 Score=37.65 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=27.1
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
+.+|.|+|++|.+|+.+++.+.+ .+.+++....+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRS 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCC
Confidence 45899999999999999998874 57777554543
No 414
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.56 E-value=4.7 Score=36.42 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=25.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus 41 k~vlItGasggIG~~la~~La~-~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFAR-RGATVVAV 70 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEE
Confidence 4799999999999999999875 47887654
No 415
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.52 E-value=0.86 Score=42.63 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=23.0
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
||+|+| .|..|+.+++.+.+ -+++++.+
T Consensus 1 kililG-~g~~~~~l~~aa~~-~G~~v~~~ 28 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQR-LGVEVIAV 28 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHH-cCCEEEEE
Confidence 799999 49999999998665 58887654
No 416
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.49 E-value=6.9 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-||+|+| .|+-|+..++.+. . +.+++ +.|.
T Consensus 7 ~~v~v~G-~G~sG~a~~~~L~-~-g~~v~-v~D~ 36 (454)
T PRK01368 7 QKIGVFG-LGKTGISVYEELQ-N-KYDVI-VYDD 36 (454)
T ss_pred CEEEEEe-ecHHHHHHHHHHh-C-CCEEE-EECC
Confidence 4899999 5999999999887 4 77754 5773
No 417
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=89.47 E-value=1.6 Score=39.59 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=28.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
.+|.|.|++|.+|+.+++.+.+ .+.++++.+++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLL-RGYTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECC
Confidence 5899999999999999998875 57888877654
No 418
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=89.46 E-value=0.67 Score=44.88 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---eeeecCHHHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DVvI 111 (257)
..||.|+|+ |.||+.+++.+.. .+..-+-++++.. ..+..++. .++ +.-++++.+.+. .+|+||
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~-~g~~~I~V~nRt~--~ra~~La~---~~~~~~~~~~~~l~~~l~------~aDiVI 247 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTA-LAPKQIMLANRTI--EKAQKITS---AFRNASAHYLSELPQLIK------KADIII 247 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHH-cCCCEEEEECCCH--HHHHHHHH---HhcCCeEecHHHHHHHhc------cCCEEE
Confidence 358999995 9999999999875 4554444555431 11222321 121 222466667774 799999
Q ss_pred EcCC
Q 025154 112 DFTD 115 (257)
Q Consensus 112 DFT~ 115 (257)
-.|.
T Consensus 248 ~aT~ 251 (414)
T PRK13940 248 AAVN 251 (414)
T ss_pred ECcC
Confidence 8873
No 419
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.39 E-value=2 Score=41.64 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=66.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhhhh-cCCCCCCeeeecCHHHHHhcc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGMVC-DMEQPLEIPVMSDLTMVLGSI 101 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~g~~~-g~~~~~gv~v~~dl~~~l~~~ 101 (257)
++|+|+| .|-+|--++-+.+ ..++.++| +|.+ ..|+ +..+++ ..-.......++|.+++-
T Consensus 10 ~~I~ViG-LGYVGLPlA~~fA-~~G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~--- 83 (436)
T COG0677 10 ATIGVIG-LGYVGLPLAAAFA-SAGFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK--- 83 (436)
T ss_pred eEEEEEc-cccccHHHHHHHH-HcCCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc---
Confidence 7999999 7999999997655 67899887 4421 1121 112111 000122356677777663
Q ss_pred ccCCCccEEEEcC-------------ChHhHHHHHHHHHHcCCCeEEeCC---CCCHHHHHHHHH
Q 025154 102 SQSKARAVVIDFT-------------DASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSA 150 (257)
Q Consensus 102 ~~~~~~DVvIDFT-------------~p~~~~~~~~~a~~~Gi~vViGTT---G~s~e~~~~L~~ 150 (257)
.+||+|..- .-+.+.+.+...++.|-=||++.| |-+++-...|.+
T Consensus 84 ----~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 84 ----ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred ----cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 689887652 123445667777899999999987 777665555544
No 420
>PLN02494 adenosylhomocysteinase
Probab=89.38 E-value=1.8 Score=42.82 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=48.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
--+|+|+| +|++|+.+++.+. .-+++++. ++.... + ..+.. ..|..+. ++++++. .+|++|+.|
T Consensus 254 GKtVvViG-yG~IGr~vA~~ak-a~Ga~VIV-~e~dp~-r-~~eA~----~~G~~vv-~leEal~------~ADVVI~tT 317 (477)
T PLN02494 254 GKVAVICG-YGDVGKGCAAAMK-AAGARVIV-TEIDPI-C-ALQAL----MEGYQVL-TLEDVVS------EADIFVTTT 317 (477)
T ss_pred CCEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCch-h-hHHHH----hcCCeec-cHHHHHh------hCCEEEECC
Confidence 45899999 5999999999876 44787554 553210 0 00110 1233332 6778774 689999876
Q ss_pred ChHh-HHHHHHHHHHcCCCe
Q 025154 115 DAST-VYDNVKQATAFGMRS 133 (257)
Q Consensus 115 ~p~~-~~~~~~~a~~~Gi~v 133 (257)
.... ........++.|--+
T Consensus 318 Gt~~vI~~e~L~~MK~GAiL 337 (477)
T PLN02494 318 GNKDIIMVDHMRKMKNNAIV 337 (477)
T ss_pred CCccchHHHHHhcCCCCCEE
Confidence 5433 223333344444333
No 421
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33 E-value=7.8 Score=37.25 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=23.7
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
||.|+|+ |+.|...++.+. ..+.++. ++|.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~-~~G~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLK-AQGWEVV-VSDR 31 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHH-HCCCEEE-EECC
Confidence 7999995 999999987665 5678755 5774
No 422
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=89.27 E-value=3.5 Score=33.90 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc---
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF--- 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF--- 113 (257)
+|+++.=+|.||..+...+. +.++-+..++.. |.++ ++ +..++++.+.+++...|+.-+
T Consensus 3 ~valisQSG~~~~~~~~~~~-~~g~g~s~~vs~---Gn~~----------dv----~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQ-DRGIGFSYVVSV---GNEA----------DV----DFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHH-HTT-EESEEEE----TT-S----------SS-----HHHHHHHHCT-SS--EEEEEES-
T ss_pred CEEEEECCHHHHHHHHHHHH-HcCCCeeEEEEe---Cccc----------cC----CHHHHHHHHhcCCCCCEEEEEccC
Confidence 58888889999999998765 557777666653 2111 11 233444333334566676655
Q ss_pred -CChHhHHHHHHHHHHcCCCeEEeCCCCCHH--------------HHHHHHHHhhhcC
Q 025154 114 -TDASTVYDNVKQATAFGMRSVVYVPHIQLE--------------TVSALSAFCDKAS 156 (257)
Q Consensus 114 -T~p~~~~~~~~~a~~~Gi~vViGTTG~s~e--------------~~~~L~~~a~~~g 156 (257)
..|+...+.++.+..+ ||||+=++|-+++ ..+..+++.++.|
T Consensus 65 ~~d~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aG 121 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAG 121 (138)
T ss_dssp -S-HHHHHHHHHHHCCC-S-EEEEE---------------------HHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcC
Confidence 4688888888888777 9999888775332 2345667777733
No 423
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.25 E-value=2.9 Score=36.84 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=49.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.+|.|+|++|.+|+.+++.+.+ .+..++.. +++. ... +++...+ ..+. +..|++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~------------------~~~~~~~---~~~~~~~~D~~ 60 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAA-LGARVAIG-DLDE--ALA------------------KETAAEL---GLVVGGPLDVT 60 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ECCH--HHH------------------HHHHHHh---ccceEEEccCC
Confidence 5799999999999999998875 57776543 3320 001 1111100 0122 356889
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
.++...+.+..+.+. ++.++|-..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 888887777766553 6777776655
No 424
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=89.21 E-value=6.3 Score=33.84 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=48.9
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE---EEEc
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF 113 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---vIDF 113 (257)
.+.|+|++|.+|+.+++.+.+ .+.+++...++.. . ...+. ++++.. ...++ ..|.
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~-~-~~~~~--------------~~~~~~-----~~~~~~~~~~D~ 62 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNS-P-RRVKW--------------LEDQKA-----LGFDFIASEGNV 62 (246)
T ss_pred EEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCCh-H-HHHHH--------------HHHHHh-----cCCcEEEEEcCC
Confidence 579999999999999999875 4778776544211 0 00000 011111 12233 3677
Q ss_pred CChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
+.++...+.+..+.+. ++.+|+=+.|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 91 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGI 91 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 7777776666655443 67777766664
No 425
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.21 E-value=3.2 Score=38.45 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=56.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC------CCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~------~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV 109 (257)
|||.|+|+ |.||....-.+.+.. ..+.-...++ ..|-.+....+. .......+.+.+ .+ ..+|+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~-~~~~~~~~~~~~-~~------~~~Dl 70 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGN-FTTPVVAATDAE-AL------GPADL 70 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCc-cccccccccChh-hc------CCCCE
Confidence 69999996 999999998887655 3333333221 112111111000 000111122222 22 37899
Q ss_pred EEEcCC---hHhHHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhh
Q 025154 110 VIDFTD---ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 154 (257)
Q Consensus 110 vIDFT~---p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~ 154 (257)
+|-++- .+.+.+.+...+.....|++==-|+.-++ .+++...+
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~ 116 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPK 116 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCc
Confidence 998874 44444555544444444554345776543 67777666
No 426
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.17 E-value=3.1 Score=38.64 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=40.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.+|+|+| +|+||+.+++.+. .-++++.+ +++.. +... +. . ...-.+++++++. .+|+|+-.
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~~~~--~~~~---~~-~--~~~~~~~l~e~l~------~aDvvv~~ 197 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQ-TWGFPLRC-WSRSR--KSWP---GV-Q--SFAGREELSAFLS------QTRVLINL 197 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-EeCCC--CCCC---Cc-e--eecccccHHHHHh------cCCEEEEC
Confidence 5899999 6999999999877 46888875 56421 1100 00 0 0111457889985 79988854
No 427
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.16 E-value=1.5 Score=40.06 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
..|.+ +.+|.|.|++|-.|+.+++.+.+ .+.++++..
T Consensus 4 ~~~~~-~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~ 40 (338)
T PLN00198 4 LTPTG-KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTV 40 (338)
T ss_pred ccCCC-CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEE
Confidence 34555 57899999999999999999885 477877654
No 428
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=89.13 E-value=3.4 Score=39.76 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=60.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecC-C--CCcchh-hhhcCCCCCCeeeecCHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S--VGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~--~g~d~g-~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVv 110 (257)
|.||.|+|. |.+|..+++.+.+ -+++++.+.... . .+.... +..-.+......-|.|.+.+++ +++..++|+|
T Consensus 2 ~k~iLi~g~-g~~a~~i~~aa~~-~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~-~a~~~~id~I 78 (451)
T PRK08591 2 FDKILIANR-GEIALRIIRACKE-LGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIIS-AAEITGADAI 78 (451)
T ss_pred cceEEEECC-CHHHHHHHHHHHH-cCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHH-HHHHhCCCEE
Confidence 679999994 9999999997764 588887754321 0 010001 1000000000112445555443 2233579988
Q ss_pred EEcCC--hHhHHHHHHHHHHcCCCeEEeCCC--C-CHHHHHHHHHHhhhcCceE
Q 025154 111 IDFTD--ASTVYDNVKQATAFGMRSVVYVPH--I-QLETVSALSAFCDKASMGC 159 (257)
Q Consensus 111 IDFT~--p~~~~~~~~~a~~~Gi~vViGTTG--~-s~e~~~~L~~~a~~~gipv 159 (257)
+=... .+. ......+.+.|++++ |.+- + ...+...+++++++.|+|+
T Consensus 79 ~p~~~~~~e~-~~~~~~~e~~gi~~~-g~~~~~~~~~~DK~~~r~~l~~~gIp~ 130 (451)
T PRK08591 79 HPGYGFLSEN-ADFAEICEDSGFTFI-GPSAETIRLMGDKVTAKATMKKAGVPV 130 (451)
T ss_pred EECCCccccC-HHHHHHHHHCCCceE-CcCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 74331 111 134566667787765 3220 0 0011234566666666665
No 429
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.13 E-value=2.5 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
...-||+|+|+ |-||+.|+..++...+++++- +|.
T Consensus 307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~ 341 (708)
T PRK11154 307 RPVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI 341 (708)
T ss_pred CcccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence 34468999996 999999998777577888774 563
No 430
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.10 E-value=7.1 Score=38.87 Aligned_cols=125 Identities=8% Similarity=0.092 Sum_probs=65.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH--HHHHhccccCCCccEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL--TMVLGSISQSKARAVVI 111 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl--~~~l~~~~~~~~~DVvI 111 (257)
.=+|.|+| +|++|+.+++.+.+ .+.+++ ++|.+. +...++. +.|+++ +.|. ++++++ +.-.++|++|
T Consensus 417 ~~hiiI~G-~G~~G~~la~~L~~-~g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~~L~~-a~i~~a~~vi 486 (558)
T PRK10669 417 CNHALLVG-YGRVGSLLGEKLLA-AGIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEEIMQL-AHLDCARWLL 486 (558)
T ss_pred CCCEEEEC-CChHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHHHHHh-cCccccCEEE
Confidence 34899999 59999999998864 466665 566431 1122221 223332 2221 223321 1113678665
Q ss_pred EcC-ChHhHHHHHHHHHHc--CCCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHHHHHH
Q 025154 112 DFT-DASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 175 (257)
Q Consensus 112 DFT-~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~ 175 (257)
-.+ ..+.....+..+.+. .+++|.=+. ++++.+.+ ++.|+-.+++|..-++-.+.+.+
T Consensus 487 v~~~~~~~~~~iv~~~~~~~~~~~iiar~~--~~~~~~~l----~~~Gad~vv~p~~~~a~~i~~~l 547 (558)
T PRK10669 487 LTIPNGYEAGEIVASAREKRPDIEIIARAH--YDDEVAYI----TERGANQVVMGEREIARTMLELL 547 (558)
T ss_pred EEcCChHHHHHHHHHHHHHCCCCeEEEEEC--CHHHHHHH----HHcCCCEEEChHHHHHHHHHHHh
Confidence 443 333332233333332 345554332 34555555 34678889888887776554433
No 431
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.06 E-value=2.1 Score=39.68 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
||.|+|+ |..|..+++.++. .++.=.-++|
T Consensus 1 kVlVVGa-GGlG~eilknLal-~Gvg~I~IvD 30 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLAL-SGFRNIHVID 30 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEC
Confidence 6999996 9999999999874 5777667777
No 432
>PLN02650 dihydroflavonol-4-reductase
Probab=89.04 E-value=1.5 Score=40.50 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
..+|.|.|++|.+|+.+++.+.+ .+.++++...
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~-~G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLE-RGYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHH-CCCEEEEEEc
Confidence 45899999999999999998875 5788877543
No 433
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.97 E-value=3.4 Score=35.85 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=47.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.++.|+|++|.+|+.+++.+.+ .+.+++.+ ++.. ....++ .+...+ .+.. +..|++
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~-~r~~--~~~~~~---------------~~~~~~----~~~~~~~~D~~ 68 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAE-AGARVHVC-DVSE--AALAAT---------------AARLPG----AKVTATVADVA 68 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHH-CCCEEEEE-eCCH--HHHHHH---------------HHHHhc----CceEEEEccCC
Confidence 5899999999999999999875 57786544 3321 001111 111110 0112 456888
Q ss_pred ChHhHHHHHHHHHH--cCCCeEEeCCC
Q 025154 115 DASTVYDNVKQATA--FGMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~--~Gi~vViGTTG 139 (257)
.++.....+..+.+ .++..|+-..|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 69 DPAQVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 87776666655443 36777775554
No 434
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.96 E-value=0.9 Score=42.38 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=47.9
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEEcC
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDFT 114 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvIDFT 114 (257)
.+|.||+.++|++.++.++. .|+.++ .+.+. ...+.. +. .|+.+. .++. +++|||
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt-----~~KL~~--------v~---kEI~~~----~~vev~~i~~Dft 109 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRT-----QEKLEA--------VA---KEIEEK----YKVEVRIIAIDFT 109 (312)
T ss_pred EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCC-----HHHHHH--------HH---HHHHHH----hCcEEEEEEEecC
Confidence 56999999999999999985 899955 44432 111110 00 111111 2322 478999
Q ss_pred ChHhHHHHHHHHH-HcCCCeEEeCCC
Q 025154 115 DASTVYDNVKQAT-AFGMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~-~~Gi~vViGTTG 139 (257)
.++..++.++..+ ..-+-++|=--|
T Consensus 110 ~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 110 KGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred CCchhHHHHHHHhcCCceEEEEeccc
Confidence 8888777665544 344555554444
No 435
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=88.88 E-value=2.5 Score=45.47 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=56.2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCc-----EEEEEEecC----------------CCCcchhhhh-----cCCCCCCe
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDSH----------------SVGEDIGMVC-----DMEQPLEI 88 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~~----------------~~g~d~g~~~-----g~~~~~gv 88 (257)
..||.|+|+ |..|..+++.++. .|+ --.-++|.. ..|+.-.+.+ .+.....+
T Consensus 419 ~~kVlvvGa-GGlG~e~lknLal-~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I 496 (1008)
T TIGR01408 419 NLNIFLVGC-GAIGCEMLKNFAL-MGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKI 496 (1008)
T ss_pred hCcEEEECC-ChHHHHHHHHHHH-hCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEE
Confidence 368999996 9999999998874 455 233455521 1122111111 11111122
Q ss_pred eee-cCH---------HHHHhccccCCCccEEEEcCC-hHhHHHHHHHHHHcCCCeEEe-CCCC
Q 025154 89 PVM-SDL---------TMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY-VPHI 140 (257)
Q Consensus 89 ~v~-~dl---------~~~l~~~~~~~~~DVvIDFT~-p~~~~~~~~~a~~~Gi~vViG-TTG~ 140 (257)
..+ ..+ ++.+. .+|+||+... .++-.-.-..|.++++|+|-+ |.|+
T Consensus 497 ~~~~~~v~~~~e~i~~~~f~~------~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~ 554 (1008)
T TIGR01408 497 DAHQNRVGPETETIFNDEFYE------KLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGT 554 (1008)
T ss_pred EEEEeecChhhhhhhhHHHhh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCc
Confidence 222 111 22332 6899999864 455556668999999999954 4454
No 436
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.83 E-value=4.8 Score=34.56 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=51.5
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEE
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID 112 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvID 112 (257)
+|.++.|.|++|.+|+.+++.+.+ .+.+++. ++++. .+..++. +.+.+. ..+++ +..|
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~-~~r~~--~~~~~~~---------------~~~~~~--~~~~~~~~~D 63 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAK-AGWDLAL-VARSQ--DALEALA---------------AELRST--GVKAAAYSID 63 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEE-EeCCH--HHHHHHH---------------HHHHhC--CCcEEEEEcc
Confidence 456899999999999999999875 5677655 44321 1111111 111100 01233 3568
Q ss_pred cCChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 113 FTDASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
.+.++.....+..+.+. ++.+|+-..|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 88888777776666553 57788766653
No 437
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=88.82 E-value=2.9 Score=39.17 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=66.6
Q ss_pred ceEEEEcCCChHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.|.|..|+.|.+..++-.+. .....++||+....+. +.-+-+|+ --.|..|++++++-. ...=|+|||+
T Consensus 137 ~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~--~Fve~lg~--Yd~V~~Yd~i~~l~~-----~~~~v~VDfa 207 (314)
T PF11017_consen 137 AQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNV--AFVESLGC--YDEVLTYDDIDSLDA-----PQPVVIVDFA 207 (314)
T ss_pred cEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcch--hhhhccCC--ceEEeehhhhhhccC-----CCCEEEEECC
Confidence 468999999999999999888 6788999999875421 11111121 123556888888754 3567999999
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCCCCHH
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPHIQLE 143 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~s~e 143 (257)
-...+...+..-+.- ...+.||-|.++..
T Consensus 208 G~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~ 238 (314)
T PF11017_consen 208 GNGEVLAALHEHLGDNLVYSCLVGATHWDKV 238 (314)
T ss_pred CCHHHHHHHHHHHhhhhhEEEEEEccCcccc
Confidence 665555444433322 24567899988653
No 438
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.81 E-value=1.7 Score=40.61 Aligned_cols=72 Identities=25% Similarity=0.309 Sum_probs=44.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C--CCCCeeeecCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E--QPLEIPVMSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~-~--~~~gv~v~~dl~~~l~~~~~~~~~DVvID 112 (257)
|+|.|+|..|-+|+..+..+.+ .+.+++ ++|.-..|.. ..+... . ...++.=..-+++++++ .++|.||.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCH-HHhhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence 5899999999999999988875 788877 6773222211 111100 0 00011111235667765 79999999
Q ss_pred cC
Q 025154 113 FT 114 (257)
Q Consensus 113 FT 114 (257)
|.
T Consensus 74 FA 75 (329)
T COG1087 74 FA 75 (329)
T ss_pred Cc
Confidence 96
No 439
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.78 E-value=9.9 Score=38.68 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=65.7
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVV 110 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVv 110 (257)
.-+|.|+| +||+|+.+++.+.+ .+.+++ ++|.+. +.+..+. +.|.++ +. +.+ ++++ +.-.++|++
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~-agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAG-FGRFGQIVGRLLLS-SGVKMT-VLDHDP--DHIETLR----KFGMKVFYGDATRMD-LLES-AGAAKAEVL 468 (621)
T ss_pred cCcEEEEe-cChHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHHH----hcCCeEEEEeCCCHH-HHHh-cCCCcCCEE
Confidence 35899999 59999999998764 567665 456431 1111111 234444 22 333 3321 001367876
Q ss_pred EEcC-ChHhHHHHHHHHHHcC--CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEccCchHHHHH
Q 025154 111 IDFT-DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 171 (257)
Q Consensus 111 IDFT-~p~~~~~~~~~a~~~G--i~vViGTTG~s~e~~~~L~~~a~~~gipvl~spNfSlGvnl 171 (257)
|-.+ .++.....+..+.+.. .++++=+ .+.++.++|+++ |+-.++-..+.-+..+
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~----Gad~v~~e~~e~sl~l 526 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQA----GVEKPERETFEGALKS 526 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHC----CCCEEehhhHhHHHHH
Confidence 6555 5566666667776654 4454422 345566666553 4445655555444433
No 440
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.73 E-value=4.3 Score=31.04 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=54.3
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ec---CHHHHHhccccCCCccEEEEc
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MS---DLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~---dl~~~l~~~~~~~~~DVvIDF 113 (257)
|.|+| +|++|+.+++.+.+ .+..++. +|... .....+. +.++.+ +. +.+.+... .-.++|.+|-.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLERA--GIEKADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHHT--TGGCESEEEEE
T ss_pred eEEEc-CCHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhhc--CccccCEEEEc
Confidence 67999 59999999999987 5556664 55321 1111111 122322 22 22222210 01367876666
Q ss_pred C-ChHhHHHHHHHHHH-cC-CCeEEeCCCCCHHHHHHHHHHhhhcCceEEEcc
Q 025154 114 T-DASTVYDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 163 (257)
Q Consensus 114 T-~p~~~~~~~~~a~~-~G-i~vViGTTG~s~e~~~~L~~~a~~~gipvl~sp 163 (257)
| ..+.....+..+.+ ++ ++++. .. .+++..+.++ +.|+-.+++|
T Consensus 70 ~~~d~~n~~~~~~~r~~~~~~~ii~-~~-~~~~~~~~l~----~~g~d~vi~P 116 (116)
T PF02254_consen 70 TDDDEENLLIALLARELNPDIRIIA-RV-NDPENAELLR----QAGADHVISP 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSEEEE-EE-SSHHHHHHHH----HTT-SEEEEH
T ss_pred cCCHHHHHHHHHHHHHHCCCCeEEE-EE-CCHHHHHHHH----HCCcCEEECc
Confidence 6 44444555566655 34 34443 22 3444444443 3556666655
No 441
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.71 E-value=2.2 Score=36.43 Aligned_cols=85 Identities=24% Similarity=0.210 Sum_probs=50.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.+|.|+|++|.+|+.+++.+.+ .+++++..+++.. ....++. +.+.. ....+. +..|++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~--~~~~~~~---------------~~~~~--~~~~~~~~~~D~~ 65 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINE--EAAQELL---------------EEIKE--EGGDAIAVKADVS 65 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCH--HHHHHHH---------------HHHHh--cCCeEEEEECCCC
Confidence 4799999999999999998874 5788876545321 0111110 11110 001222 335788
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
.++.+.+.+....+. ++.+|+-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 66 SEEDVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 888776666555442 67888766553
No 442
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.69 E-value=4.3 Score=37.61 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=52.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCeeeec---CHHHHHhccccCCCccEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMS---DLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~-g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVvID 112 (257)
+|.|.|++|.+|+..++.+. ..+.++++...+.. ....+. ..+ -..+.-+. ++.+.+.+.. +..+|+++|
T Consensus 161 ~VlV~GaaG~vG~~aiqlAk-~~G~~Vi~~~~~~~---k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~-~~gvD~v~d 234 (348)
T PLN03154 161 SVFVSAASGAVGQLVGQLAK-LHGCYVVGSAGSSQ---KVDLLKNKLG-FDEAFNYKEEPDLDAALKRYF-PEGIDIYFD 234 (348)
T ss_pred EEEEecCccHHHHHHHHHHH-HcCCEEEEEcCCHH---HHHHHHHhcC-CCEEEECCCcccHHHHHHHHC-CCCcEEEEE
Confidence 79999999999999998665 56888776543211 111110 010 00111121 3444332111 125899999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++-.......+......|.=+++|..
T Consensus 235 ~vG~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 235 NVGGDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred CCCHHHHHHHHHHhccCCEEEEECcc
Confidence 98765444454544455655556653
No 443
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.66 E-value=4.1 Score=37.17 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=53.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe---eeec---CHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMS---DLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv---~v~~---dl~~~l~~~~~~~~~DV 109 (257)
-+|.|.|++|.+|+.+++.+. ..+.++++...+.. ....+.. .+|+ .-++ ++.+.+.+.. +..+|+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk-~~G~~Vi~~~~~~~---~~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-~~gvd~ 224 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAK-LKGCYVVGSAGSDE---KVDLLKN---KLGFDDAFNYKEEPDLDAALKRYF-PNGIDI 224 (338)
T ss_pred CEEEEecCccHHHHHHHHHHH-HcCCEEEEEeCCHH---HHHHHHH---hcCCceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence 379999999999999998655 56888776554321 1111110 0121 1111 3333332111 136899
Q ss_pred EEEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 110 VIDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 110 vIDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++|++-.....+.+......|.=+.+|..
T Consensus 225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence 99988665555555555566665556654
No 444
>PRK09134 short chain dehydrogenase; Provisional
Probab=88.50 E-value=6.6 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=27.5
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.+.++.|.|++|.+|+.+++.+.+ .+..++....
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~ 41 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYN 41 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 346899999999999999998874 6778776554
No 445
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.48 E-value=0.68 Score=40.37 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=28.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
++|.|.|+||..|+.+++.+.+. +.+++++...
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 58999999999999999999866 8888887764
No 446
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=88.38 E-value=2.8 Score=38.51 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=24.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcC-CcEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAG 65 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg 65 (257)
++|.|.|++|.+|+.+++.+.+.. ..+++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~ 35 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIII 35 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999988653 356654
No 447
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.32 E-value=6.4 Score=33.40 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~ 37 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAA-QGANVVINYA 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeC
Confidence 5799999999999999999875 4788755543
No 448
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.30 E-value=3.3 Score=35.35 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=25.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~-~g~~V~~~ 36 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLA-EGYKVAIT 36 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHH-CCCEEEEe
Confidence 4799999999999999999875 58886654
No 449
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.29 E-value=2.1 Score=38.22 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=48.2
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCeee---ecCHHHHHhccccCCCccEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVvID 112 (257)
+|.|+|+ |-+|...++.+. ..+.+ ++. ++... .. -+++ .++|... +.+..+.+.++..+..+|++||
T Consensus 123 ~VlV~G~-G~vG~~~~~~ak-~~G~~~Vi~-~~~~~--~r-~~~a---~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 123 RVLVVGA-GMLGLTAAAAAA-AAGAARVVA-ADPSP--DR-RELA---LSFGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred EEEEECC-CHHHHHHHHHHH-HcCCCEEEE-ECCCH--HH-HHHH---HHcCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 7999996 999999998665 45776 544 45321 00 1111 1122211 1222222111111135899999
Q ss_pred cCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154 113 FTD-ASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 113 FT~-p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++- +......+......|.=+++|..
T Consensus 194 ~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 194 FSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 884 44444444444455665667753
No 450
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=88.26 E-value=1.2 Score=38.11 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhc-CCcEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG 65 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg 65 (257)
|+|.|+|++|.+|+.+++.+.+. .+..++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999998865 3555543
No 451
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.26 E-value=1.5 Score=42.39 Aligned_cols=59 Identities=20% Similarity=0.106 Sum_probs=40.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
.+|||+| +|++|+.+++.+. .=++++.+ +|+.. ... ..++....++++++. .+|+|+-.
T Consensus 152 ktvGIiG-~G~IG~~vA~~~~-~fGm~V~~-~d~~~-~~~---------~~~~~~~~~l~ell~------~sDiVslh 210 (409)
T PRK11790 152 KTLGIVG-YGHIGTQLSVLAE-SLGMRVYF-YDIED-KLP---------LGNARQVGSLEELLA------QSDVVSLH 210 (409)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-HCCCEEEE-ECCCc-ccc---------cCCceecCCHHHHHh------hCCEEEEc
Confidence 5899999 6999999999876 46888875 55421 000 112333458999985 68987754
No 452
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.24 E-value=2.3 Score=39.26 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=51.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--ec--CHHHHHhccccCCCccEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MS--DLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--~~--dl~~~l~~~~~~~~~DVvI 111 (257)
-+|+|.|+ |.+|...++.+. ..+.+++++. +.....+-.+++ .++|+.. +. ++.+... ...+|++|
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak-~~G~~vi~~~-~~~~~~~~~~~~---~~~Ga~~v~~~~~~~~~~~~----~~~~d~vi 243 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLR-LRGFEVYVLN-RRDPPDPKADIV---EELGATYVNSSKTPVAEVKL----VGEFDLII 243 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCeEEEEe-cCCCCHHHHHHH---HHcCCEEecCCccchhhhhh----cCCCCEEE
Confidence 37999996 999999998665 4577766543 210000111111 1223222 11 2222111 13689999
Q ss_pred EcCC-hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 112 DFTD-ASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 112 DFT~-p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
|++- +......+......|.=+.+|++.
T Consensus 244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 244 EATGVPPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred ECcCCHHHHHHHHHHccCCcEEEEEecCC
Confidence 9986 444555555555667666678753
No 453
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.23 E-value=1.5 Score=39.92 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=52.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCeeee--cCHHHHHhccccCCCccEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVvID 112 (257)
-+|.|.|++|.+|+..++.+. ..+. ++++...+......+.+-.|. ..+..+ .++.+.+.++. +..+|+++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence 379999999999999998655 5677 677665432100001100111 011111 23333322111 136899999
Q ss_pred cCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 113 FTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
++........+......|.=+.+|..
T Consensus 231 ~~g~~~~~~~~~~l~~~G~iv~~G~~ 256 (345)
T cd08293 231 NVGGEISDTVISQMNENSHIILCGQI 256 (345)
T ss_pred CCCcHHHHHHHHHhccCCEEEEEeee
Confidence 87655544444444455655556643
No 454
>PRK07023 short chain dehydrogenase; Provisional
Probab=88.19 E-value=0.75 Score=39.78 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=26.8
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
||+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGV 31 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHh-CCCEEEEE
Confidence 67999999999999999999875 58887764
No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.16 E-value=3.2 Score=42.92 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEe
Q 025154 34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID 68 (257)
Q Consensus 34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd 68 (257)
..-||+|+|+ |-||+.|+..++ ..+++++ .+|
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a-~~G~~V~-l~d 343 (715)
T PRK11730 312 PVKQAAVLGA-GIMGGGIAYQSA-SKGVPVI-MKD 343 (715)
T ss_pred ccceEEEECC-chhHHHHHHHHH-hCCCeEE-EEe
Confidence 3458999996 999999998766 5588776 455
No 456
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.14 E-value=1.7 Score=40.63 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=23.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCc-EEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~ 69 (257)
+||+|+|+ |++|+.++-.+....=. || ..+|.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el-~LiDi 33 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSEL-VLIDI 33 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceE-EEEEc
Confidence 58999998 99999999888544333 44 36674
No 457
>PRK06196 oxidoreductase; Provisional
Probab=87.84 E-value=4.2 Score=36.93 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus 27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~ 56 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVP 56 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence 5799999999999999998875 57887764
No 458
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=87.80 E-value=1.9 Score=41.31 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=77.3
Q ss_pred CceEEEEcCCChHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhh---cCC----CCCC-eeeec-----CHHHHH
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVC---DME----QPLE-IPVMS-----DLTMVL 98 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~g~~~---g~~----~~~g-v~v~~-----dl~~~l 98 (257)
..-+.|.||+|-.|+.+++.+... ++..+. +.-+. .+.+.+++ +.. -+.. +.+.| +++++.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla--vAGRn-~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema 81 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA--VAGRN-EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA 81 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE--EecCC-HHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence 456899999999999999988753 344332 22110 00111111 100 0111 22333 255555
Q ss_pred hccccCCCccEEEEcCChHhH--HHHHHHHHHcCCCeE--EeCCCCCHHHHHHHHHHhhhcCceEEEccCc-----hHHH
Q 025154 99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGS 169 (257)
Q Consensus 99 ~~~~~~~~~DVvIDFT~p~~~--~~~~~~a~~~Gi~vV--iGTTG~s~e~~~~L~~~a~~~gipvl~spNf-----SlGv 169 (257)
..+-|+|..--|--. ...++.|+++|.+-| .|-+-|-+--..+-.+.|+++|+-|+=|..| -+||
T Consensus 82 ------k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv 155 (423)
T KOG2733|consen 82 ------KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGV 155 (423)
T ss_pred ------hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCcccee
Confidence 367899988766555 578899999999876 4444443333345677899999988866664 5777
Q ss_pred HHH
Q 025154 170 ILL 172 (257)
Q Consensus 170 nll 172 (257)
+.+
T Consensus 156 ~f~ 158 (423)
T KOG2733|consen 156 MFL 158 (423)
T ss_pred eee
Confidence 554
No 459
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.79 E-value=5 Score=38.84 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=24.8
Q ss_pred CceEEEEcCCChHHHH-HHHHHHhcCCcEEEEEEec
Q 025154 35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~ 69 (257)
+.||.|+|. |+.|.. +++.+. ..+.++. +.|.
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~-~~G~~V~-~~D~ 39 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLL-NLGYKVS-GSDL 39 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHH-hCCCeEE-EECC
Confidence 468999995 999999 687665 5688865 4664
No 460
>PRK08017 oxidoreductase; Provisional
Probab=87.79 E-value=12 Score=32.34 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=24.5
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
+|.|+|++|.+|+.+++.+.+ .+.+++.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~-~g~~v~~~ 32 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKR-RGYRVLAA 32 (256)
T ss_pred EEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence 699999999999999999875 47777654
No 461
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=87.78 E-value=0.61 Score=43.24 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCeEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 025154 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 160 (257)
Q Consensus 119 ~~~~~~~a~~~Gi~vViGTTG~s~e~~~~L~~~a~~~gipvl 160 (257)
+.-++.+|++.|++.|-+|+-+... ...+.++++++|+|++
T Consensus 189 S~~YA~AAl~~g~~fvN~tP~~~a~-~P~l~ela~~~gvpi~ 229 (295)
T PF07994_consen 189 SMLYAYAALEAGVPFVNGTPSNIAD-DPALVELAEEKGVPIA 229 (295)
T ss_dssp HHHHHHHHHHTTEEEEE-SSSTTTT-SHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHCCCCeEeccCccccC-CHHHHHHHHHcCCCee
Confidence 4567788899999999999976542 3578899999999987
No 462
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.72 E-value=2.2 Score=34.36 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=53.4
Q ss_pred EEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee--------------ecCHHHHHhcccc
Q 025154 38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--------------MSDLTMVLGSISQ 103 (257)
Q Consensus 38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v--------------~~dl~~~l~~~~~ 103 (257)
|+|+|+ |.||..++..+.+ .+.++.-+..+. ....+. ..|+.+ ..+..+..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~~----~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 65 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRSP----RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADA----- 65 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHH-TTCEEEEEESHH----HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHH-----
T ss_pred CEEECc-CHHHHHHHHHHHH-CCCceEEEEccc----cHHhhh----heeEEEEecccceecccccccCcchhcc-----
Confidence 789996 9999999998876 788866544322 011110 111111 11221122
Q ss_pred CCCccEEEEcCChHhHHHHHHHHHH---cCCCeEEeCCCCCHHHHHHHHHHh
Q 025154 104 SKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFC 152 (257)
Q Consensus 104 ~~~~DVvIDFT~p~~~~~~~~~a~~---~Gi~vViGTTG~s~e~~~~L~~~a 152 (257)
.++|+||-++-.....+.+..... ...++|+--.|+..+ +.+++.-
T Consensus 66 -~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--~~l~~~~ 114 (151)
T PF02558_consen 66 -GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--EVLAEYF 114 (151)
T ss_dssp -STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--HHHHCHS
T ss_pred -CCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--HHHHHHc
Confidence 478988888765555555544433 333466666788754 3455444
No 463
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=87.65 E-value=3.1 Score=44.76 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=27.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-+|.|+|+ |..|..+++.+. ..|+.=+.++|.
T Consensus 25 s~VLIiG~-gGLG~EiaKnL~-laGVg~iti~D~ 56 (1008)
T TIGR01408 25 SNVLISGM-GGLGLEIAKNLV-LAGVKSVTLHDT 56 (1008)
T ss_pred CcEEEECC-CHHHHHHHHHHH-HcCCCeEEEEeC
Confidence 48999996 999999999987 567877778884
No 464
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.60 E-value=1.7 Score=40.27 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-.+|||+| +|++|+.+++.+. .=++++.+ +|+. +... ..++. +.++++++. .+|+|+-..
T Consensus 145 gktvGIiG-~G~IG~~vA~~~~-~fgm~V~~-~d~~--~~~~--------~~~~~-~~~l~ell~------~sDvv~lh~ 204 (311)
T PRK08410 145 GKKWGIIG-LGTIGKRVAKIAQ-AFGAKVVY-YSTS--GKNK--------NEEYE-RVSLEELLK------TSDIISIHA 204 (311)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-hcCCEEEE-ECCC--cccc--------ccCce-eecHHHHhh------cCCEEEEeC
Confidence 36899999 6999999999875 45888775 5653 1110 11222 458999995 799887543
No 465
>PRK06523 short chain dehydrogenase; Provisional
Probab=87.54 E-value=9.7 Score=33.03 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 10 k~vlItGas~gIG~~ia~~l~~-~G~~v~~~ 39 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLE-AGARVVTT 39 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHH-CCCEEEEE
Confidence 5799999999999999999875 57887654
No 466
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=87.53 E-value=6.6 Score=38.22 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=71.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
|||.|+| +|.=-.+|+..+.+++...-+ .+.+.+.|...... -.++.+.+|.+.+.+ .|+..++|.+|-=.-
T Consensus 1 mkVLviG-sGgREHAiA~~la~s~~v~~~-~~apgN~G~a~~~~-----~~~~~~~~~~~~lv~-fA~~~~idl~vVGPE 72 (428)
T COG0151 1 MKVLVIG-SGGREHALAWKLAQSPLVLYV-YVAPGNPGTALEAY-----LVNIEIDTDHEALVA-FAKEKNVDLVVVGPE 72 (428)
T ss_pred CeEEEEc-CCchHHHHHHHHhcCCceeEE-EEeCCCCccchhhh-----hccCccccCHHHHHH-HHHHcCCCEEEECCc
Confidence 7999999 688888888888876654333 23343334322111 112222145555542 334467887665554
Q ss_pred hHhHHHHHHHHHHcCCCeEEeCCCCCHHHH----HHHHHHhhhcCceEEEccCch
Q 025154 116 ASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIAPTLS 166 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi~vViGTTG~s~e~~----~~L~~~a~~~gipvl~spNfS 166 (257)
..-..-.+....+.|++++ |-|-- ..|+ ...+++.+++|||-.---+|+
T Consensus 73 ~pL~~GvvD~l~~~Gi~vF-GPsk~-AA~lE~SK~faK~fm~k~~IPta~y~~f~ 125 (428)
T COG0151 73 APLVAGVVDALRAAGIPVF-GPTKA-AAQLEGSKAFAKDFMKKYGIPTAEYEVFT 125 (428)
T ss_pred HHHhhhhHHHHHHCCCcee-CcCHH-HHHHHhhHHHHHHHHHHcCCCcccccccC
Confidence 5555667788889999976 66621 1122 235666778888866666666
No 467
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.39 E-value=2.1 Score=40.74 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=30.4
Q ss_pred ccccCCCCCCCceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 25 ISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 25 ~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
...+..|.-.+-||+|+|+ |++|+..++.+.. -+.+ |-++|+
T Consensus 157 ~~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~-lGa~-V~v~d~ 198 (370)
T TIGR00518 157 VLLGGVPGVEPGDVTIIGG-GVVGTNAAKMANG-LGAT-VTILDI 198 (370)
T ss_pred eeecCCCCCCCceEEEEcC-CHHHHHHHHHHHH-CCCe-EEEEEC
Confidence 3445555555678999995 9999999998764 4676 455775
No 468
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.30 E-value=1.7 Score=40.47 Aligned_cols=57 Identities=19% Similarity=0.045 Sum_probs=39.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|+|+| +|++|+.+++.+. .=++++.+ +++. +.+. .. -+.++++++. .+|+|+-..
T Consensus 149 ktvgIiG-~G~IG~~vA~~l~-~fgm~V~~-~~~~--~~~~----------~~-~~~~l~ell~------~sDiv~l~l 205 (317)
T PRK06487 149 KTLGLLG-HGELGGAVARLAE-AFGMRVLI-GQLP--GRPA----------RP-DRLPLDELLP------QVDALTLHC 205 (317)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCC--CCcc----------cc-cccCHHHHHH------hCCEEEECC
Confidence 5899999 6999999999876 45888875 4543 1110 01 1347999996 799888554
No 469
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=87.27 E-value=5.7 Score=38.23 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=54.9
Q ss_pred EEcCCChHHHHHHHHHHhcC-CcEEEEEEecCCCC---cchhhh----------------hcCCCCCCeeeecCHHHHHh
Q 025154 40 INGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVG---EDIGMV----------------CDMEQPLEIPVMSDLTMVLG 99 (257)
Q Consensus 40 V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g---~d~g~~----------------~g~~~~~gv~v~~dl~~~l~ 99 (257)
|.|+||-+|+..++.+...+ ++++++........ +.+.++ ...-...++.++...+.+.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~- 79 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLI- 79 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHH-
Confidence 57999999999999888764 49999987632100 000000 0000000123332222221
Q ss_pred ccccCCCccEEEEcCChHhHHHHHHHHHHcCCCeEEe
Q 025154 100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 136 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT~p~~~~~~~~~a~~~Gi~vViG 136 (257)
++++...+|+|+-...-.+...-...|++.|+.+-..
T Consensus 80 ~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA 116 (383)
T PRK12464 80 AVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALA 116 (383)
T ss_pred HHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence 1122246898887766666677777788999887764
No 470
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.22 E-value=9.8 Score=32.53 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=50.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++.. ++.. ....++. +++... ..+++ +..|++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~ 66 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAE-AGATVAFN-DGLA--AEARELA--------------AALEAA---GGRAHAIAADLA 66 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-cCCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEEccCC
Confidence 5799999999999999998874 57887665 4321 1111110 111100 01233 345888
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
.++.....+..+.+. ++.+|+-..|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 67 DPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 888777766665543 57777766653
No 471
>PRK06841 short chain dehydrogenase; Provisional
Probab=87.12 E-value=4.5 Score=34.96 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus 16 k~vlItGas~~IG~~la~~l~~-~G~~Vi~~ 45 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAA-KGARVALL 45 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEE
Confidence 4799999999999999999875 57887653
No 472
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.08 E-value=2.4 Score=39.09 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=48.6
Q ss_pred eEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 37 KVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
+|+|.|+ |.+|...++.+.. ....++++ ++....-.+ ++. ..+... ..++..+. ..+|++||++-
T Consensus 166 ~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~-~~~~~~k~~---~a~---~~~~~~--~~~~~~~~----~g~d~viD~~G 231 (341)
T cd08237 166 VIGVWGD-GNLGYITALLLKQIYPESKLVV-FGKHQEKLD---LFS---FADETY--LIDDIPED----LAVDHAFECVG 231 (341)
T ss_pred EEEEECC-CHHHHHHHHHHHHhcCCCcEEE-EeCcHhHHH---HHh---hcCcee--ehhhhhhc----cCCcEEEECCC
Confidence 7999996 9999999887764 33455554 443210111 110 111111 11222221 25899999985
Q ss_pred ----hHhHHHHHHHHHHcCCCeEEeCCC
Q 025154 116 ----ASTVYDNVKQATAFGMRSVVYVPH 139 (257)
Q Consensus 116 ----p~~~~~~~~~a~~~Gi~vViGTTG 139 (257)
+......++.....|.=+++|.++
T Consensus 232 ~~~~~~~~~~~~~~l~~~G~iv~~G~~~ 259 (341)
T cd08237 232 GRGSQSAINQIIDYIRPQGTIGLMGVSE 259 (341)
T ss_pred CCccHHHHHHHHHhCcCCcEEEEEeecC
Confidence 344455555555566666678653
No 473
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.02 E-value=7.1 Score=32.55 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=46.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee-eecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
-||.|+|+ |++|...++.+.+ .+.+++ ++++. ..++..++. .+. ....+++.-- ..+|+||-.|
T Consensus 14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~-~~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT 78 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPE-ICKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT 78 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCc-cCHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence 58999996 9999999988764 566666 44443 222222211 111 1222222211 3688888888
Q ss_pred ChHhHHHHHHHHHHcCCC
Q 025154 115 DASTVYDNVKQATAFGMR 132 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~Gi~ 132 (257)
.-+.....+..+.+.+.+
T Consensus 79 ~d~e~N~~i~~~a~~~~~ 96 (157)
T PRK06719 79 NQHAVNMMVKQAAHDFQW 96 (157)
T ss_pred CCHHHHHHHHHHHHHCCc
Confidence 666665555444444543
No 474
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.91 E-value=2.4 Score=40.57 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=69.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD 115 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT~ 115 (257)
-||.|+|. |++|..+++.+. ..+.+++ ++|............. . ....+.+.... ++|++|-...
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~-~~G~~V~-g~D~~~~~~~~~~~~~---~---~~~~~~~~~~~------~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLA-QKGVYVI-GVDKSLEALQSCPYIH---E---RYLENAEEFPE------QVDLVVRSPG 68 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHH-HCCCEEE-EEeCCccccchhHHHh---h---hhcCCcHHHhc------CCCEEEECCC
Confidence 48999995 999999998776 4567755 4664311100000000 0 00112222332 5777764443
Q ss_pred hHhHHHHHHHHHHcCCCeE-----------------EeCCCCCH--HHHHHHHHHhhhcCceEEEccCchHHHHHHHHHH
Q 025154 116 ASTVYDNVKQATAFGMRSV-----------------VYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 176 (257)
Q Consensus 116 p~~~~~~~~~a~~~Gi~vV-----------------iGTTG~s~--e~~~~L~~~a~~~gipvl~spNfSlGvnll~~~a 176 (257)
.....+.+..|+++|+++| ||-||-+- -..+.|..+-++.|.+.....| +|+.++...
T Consensus 69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~~- 145 (418)
T PRK00683 69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDGM- 145 (418)
T ss_pred CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHHh-
Confidence 2333555555655555543 23333210 1123455555556667777788 776654322
Q ss_pred HHhcCCCCCeEEEeccCC
Q 025154 177 ISASFHYKNVEIVESRPN 194 (257)
Q Consensus 177 ~~l~~~~~DiEIiE~HH~ 194 (257)
. ..|+-++|.=-.
T Consensus 146 ---~--~~~~~V~E~~s~ 158 (418)
T PRK00683 146 ---Q--QPGVRVVEISSF 158 (418)
T ss_pred ---h--cCCEEEEEechh
Confidence 2 246778885333
No 475
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=86.77 E-value=7.7 Score=35.27 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=22.9
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcC-CcEEEEE
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA 66 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~ 66 (257)
|+||.|.|+ |.+- .+++.+.+.. +++++++
T Consensus 1 ~~~vLv~g~-~~~~-~~~~~l~~~~~g~~vi~~ 31 (326)
T PRK12767 1 MMNILVTSA-GRRV-QLVKALKKSLLKGRVIGA 31 (326)
T ss_pred CceEEEecC-CccH-HHHHHHHHhccCCEEEEE
Confidence 799999997 5444 7788887665 6888864
No 476
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.77 E-value=1.7 Score=40.34 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=40.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCccEEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVvIDFT 114 (257)
.+|+|+| +|++|+.+++.+. .=++++.+ +++.. ..+ ... -+.++++++. .+|+|+-..
T Consensus 148 ktvgIiG-~G~IG~~va~~l~-~fg~~V~~-~~~~~-~~~----------~~~-~~~~l~ell~------~sDiv~l~~ 205 (314)
T PRK06932 148 STLGVFG-KGCLGTEVGRLAQ-ALGMKVLY-AEHKG-ASV----------CRE-GYTPFEEVLK------QADIVTLHC 205 (314)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-cCCCEEEE-ECCCc-ccc----------ccc-ccCCHHHHHH------hCCEEEEcC
Confidence 5899999 6999999999775 56888875 45421 000 011 1468999996 799888554
No 477
>PLN02306 hydroxypyruvate reductase
Probab=86.73 E-value=2.1 Score=41.03 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=41.5
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhh---hhcC------CCCCCeeeecCHHHHHhccccCCC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGM---VCDM------EQPLEIPVMSDLTMVLGSISQSKA 106 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~---~~g~------~~~~gv~v~~dl~~~l~~~~~~~~ 106 (257)
.+|+|+| +|++|+.+++.+...=++++. ++|+... .+... ..+. ..+.++..+.++++++. .
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~fGm~V~-~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------~ 236 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------E 236 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEE-EECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------h
Confidence 5899999 699999999987534588876 4564310 00000 0000 00011222468999996 7
Q ss_pred ccEEEEcC
Q 025154 107 RAVVIDFT 114 (257)
Q Consensus 107 ~DVvIDFT 114 (257)
+|+|+-..
T Consensus 237 sDiV~lh~ 244 (386)
T PLN02306 237 ADVISLHP 244 (386)
T ss_pred CCEEEEeC
Confidence 99877543
No 478
>PRK09186 flagellin modification protein A; Provisional
Probab=86.49 E-value=4.8 Score=34.76 Aligned_cols=30 Identities=37% Similarity=0.377 Sum_probs=25.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus 5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILE-AGGIVIAA 34 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence 4799999999999999998875 57887665
No 479
>PLN02253 xanthoxin dehydrogenase
Probab=86.48 E-value=5.5 Score=35.15 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.++.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 19 k~~lItGas~gIG~~la~~l~~-~G~~v~~~ 48 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHK-HGAKVCIV 48 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHH-cCCEEEEE
Confidence 5799999999999999998875 57887653
No 480
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=86.36 E-value=1.8 Score=40.03 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=45.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCC--CC--c-----chhhhhcCCCCCCeeeec--CH-----HHHHh
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VG--E-----DIGMVCDMEQPLEIPVMS--DL-----TMVLG 99 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g--~-----d~g~~~g~~~~~gv~v~~--dl-----~~~l~ 99 (257)
|||++.| ++.++..+.+.+.+. ++++++++..+. .+ . ++.+++ .+.+++++. ++ .+.+.
T Consensus 1 mkIvf~G-~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a---~~~~Ip~~~~~~~~~~~~~~~l~ 75 (309)
T PRK00005 1 MRIVFMG-TPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLA---LEHGIPVLQPEKLRDPEFLAELA 75 (309)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHH---HHcCCCEECcCCCCCHHHHHHHH
Confidence 6999999 799999999998764 899999996321 11 1 233444 245777743 21 22233
Q ss_pred ccccCCCccEEEEcC
Q 025154 100 SISQSKARAVVIDFT 114 (257)
Q Consensus 100 ~~~~~~~~DVvIDFT 114 (257)
+ .++|++|-++
T Consensus 76 ~----~~~Dliv~~~ 86 (309)
T PRK00005 76 A----LNADVIVVVA 86 (309)
T ss_pred h----cCcCEEEEeh
Confidence 2 5899877654
No 481
>PRK06139 short chain dehydrogenase; Provisional
Probab=86.31 E-value=6.6 Score=36.44 Aligned_cols=81 Identities=27% Similarity=0.275 Sum_probs=50.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc---EEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID 112 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VvID 112 (257)
..|.|+|++|.+|+.+++.+.+ .+.+|+. +++.. ....++. +++-+ ...+ +..|
T Consensus 8 k~vlITGAs~GIG~aia~~la~-~G~~Vvl-~~R~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D 64 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFAR-RGARLVL-AARDE--EALQAVA--------------EECRA-----LGAEVLVVPTD 64 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence 3699999999999999998875 5788764 34321 1111111 11111 1222 3468
Q ss_pred cCChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 113 FTDASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 113 FT~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
.+.++.....+..+.+. ++.+++-..|
T Consensus 65 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 65 VTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 88888887777666554 5777776665
No 482
>PRK07985 oxidoreductase; Provisional
Probab=86.29 E-value=12 Score=33.79 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=49.6
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.++.|+|++|.+|+.+++.+.+ .+.+++. +++........+ +.+.+.+. +.... +..|++
T Consensus 50 k~vlITGas~gIG~aia~~L~~-~G~~Vi~-~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~~Dl~ 110 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAR-EGADVAI-SYLPVEEEDAQD---------------VKKIIEEC--GRKAVLLPGDLS 110 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHH-CCCEEEE-ecCCcchhhHHH---------------HHHHHHHc--CCeEEEEEccCC
Confidence 4799999999999999999875 5888764 332110011111 11122110 00121 456888
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
.++.....+..+.+. ++.+++-..|
T Consensus 111 ~~~~~~~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 111 DEKFARSLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 888887777766542 4667665544
No 483
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=86.11 E-value=6.9 Score=34.16 Aligned_cols=97 Identities=11% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCH---HHHHhccccCCCcc-EEEEcC---ChHhHH--
Q 025154 50 AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL---TMVLGSISQSKARA-VVIDFT---DASTVY-- 120 (257)
Q Consensus 50 ~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl---~~~l~~~~~~~~~D-VvIDFT---~p~~~~-- 120 (257)
.-++.+.+.-++-++|++-.... ..++.++..+ +++.+ ..+| |.+|.| +|....
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~------------~~~V~ITPT~~ev~~l~~-----aGadIIAlDaT~R~Rp~~l~~l 84 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYP------------DSDVYITPTLKEVDALAE-----AGADIIALDATDRPRPETLEEL 84 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBT------------TSS--BS-SHHHHHHHHH-----CT-SEEEEE-SSSS-SS-HHHH
T ss_pred HHHHHHHHhcCCCEEEEEeccCC------------CCCeEECCCHHHHHHHHH-----cCCCEEEEecCCCCCCcCHHHH
Confidence 55667777788888988854221 2345555444 44555 4788 679998 354433
Q ss_pred ------------------HHHHHHHHcCCCeEEeCC--CCC------HHHHHHHHHHhhhcCceEEEccCc
Q 025154 121 ------------------DNVKQATAFGMRSVVYVP--HIQ------LETVSALSAFCDKASMGCLIAPTL 165 (257)
Q Consensus 121 ------------------~~~~~a~~~Gi~vViGTT--G~s------~e~~~~L~~~a~~~gipvl~spNf 165 (257)
+....|.+.|..+| ||| |++ ..+++.++++++. ++|++-=.++
T Consensus 85 i~~i~~~~~l~MADist~ee~~~A~~~G~D~I-~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri 153 (192)
T PF04131_consen 85 IREIKEKYQLVMADISTLEEAINAAELGFDII-GTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRI 153 (192)
T ss_dssp HHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE-E-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS-
T ss_pred HHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE-EcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCC
Confidence 34456677787765 676 553 2457788888876 7887644444
No 484
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.10 E-value=9.6 Score=34.98 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=49.3
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCee--e-e--cCHHHHHhccccCCCccEEE
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-M--SDLTMVLGSISQSKARAVVI 111 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~--v-~--~dl~~~l~~~~~~~~~DVvI 111 (257)
+|.|.|+ |.+|...++.+. ..+.+-+-+++... +--+++ .++|.. + + .++++.... ...+|++|
T Consensus 172 ~VlV~G~-G~vG~~aiqlak-~~G~~~Vi~~~~~~---~~~~~a---~~lGa~~vi~~~~~~~~~~~~~---~g~~D~vi 240 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVK-TLGAAEIVCADVSP---RSLSLA---REMGADKLVNPQNDDLDHYKAE---KGYFDVSF 240 (343)
T ss_pred EEEEECC-CHHHHHHHHHHH-HcCCcEEEEEeCCH---HHHHHH---HHcCCcEEecCCcccHHHHhcc---CCCCCEEE
Confidence 7999996 999999998665 45664333344321 001111 122321 1 1 134443321 12489999
Q ss_pred EcCCh-HhHHHHHHHHHHcCCCeEEeCC
Q 025154 112 DFTDA-STVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 112 DFT~p-~~~~~~~~~a~~~Gi~vViGTT 138 (257)
|++-. +.....+......|.=+.+|.+
T Consensus 241 d~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 241 EVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 99864 4444555555556665557764
No 485
>PRK12742 oxidoreductase; Provisional
Probab=86.08 E-value=5.5 Score=33.95 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~ 36 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFT 36 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEe
Confidence 4799999999999999998875 57777644
No 486
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.04 E-value=2.1 Score=40.88 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=59.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CeeeecCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~~~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV 109 (257)
-+++|+| +|.+++.+++++.. .+.++=+-++++.. ..+..++. +...+ .+.+.+|.++++. ++||
T Consensus 156 ~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI 226 (379)
T PRK06199 156 KVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI 226 (379)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence 4899999 59999999998876 45688888888541 11111110 00111 3667899999985 7999
Q ss_pred EEEcCChHh----HHHHH-HHHHHcCCCeE-EeCCCC
Q 025154 110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHI 140 (257)
Q Consensus 110 vIDFT~p~~----~~~~~-~~a~~~Gi~vV-iGTTG~ 140 (257)
|+-.|.-.. ....+ ...++-|.+|. +|...+
T Consensus 227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~el 263 (379)
T PRK06199 227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRI 263 (379)
T ss_pred EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccC
Confidence 886664111 11222 23457888876 444333
No 487
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=86.00 E-value=2.5 Score=37.74 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCe--ee-ec--CHHHHHhccccCCCccEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PV-MS--DLTMVLGSISQSKARAVV 110 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~~--dl~~~l~~~~~~~~~DVv 110 (257)
-+|.|.|++|.+|+.+++.+ ...+.+++...++... ...+. ..|+ .+ +. ++.+.+.++..+..+|++
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~~~~---~~~~~----~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLA-AARGINVINLVRRDAG---VAELR----ALGIGPVVSTEQPGWQDKVREAAGGAPISVA 212 (324)
T ss_pred CEEEEcccccHHHHHHHHHH-HHCCCeEEEEecCHHH---HHHHH----hcCCCEEEcCCCchHHHHHHHHhCCCCCcEE
Confidence 47999999999999999855 4668888877764311 11111 1111 11 11 122211111112368999
Q ss_pred EEcCChHhHHHHHHHHHHcCCCeEEeCC
Q 025154 111 IDFTDASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 111 IDFT~p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
+|++......+.++.....|.=+.+|.+
T Consensus 213 ~d~~g~~~~~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 213 LDSVGGKLAGELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred EECCCChhHHHHHHhhcCCcEEEEEecC
Confidence 9987655555555544455555557754
No 488
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.99 E-value=4.1 Score=35.39 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=49.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
.++.|+|++|.+|+.+++.+.+ .+..++.. +++. ... ++ .+++... ..++. +..|++
T Consensus 8 ~~ilItGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~-~~--------------~~~~~~~---~~~~~~~~~D~~ 65 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAE-EGAIPVIF-GRSA--PDD-EF--------------AEELRAL---QPRAEFVQVDLT 65 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHH-cCCcEEEE-cCCh--hhH-HH--------------HHHHHhc---CCceEEEEccCC
Confidence 3799999999999999999875 56776543 3221 000 10 0111100 01122 456788
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
.++.....+..+.+. ++.+|+-..|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 66 DDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 888777666655443 57788777663
No 489
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=85.98 E-value=2.9 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCceEEEEcCCChH-HHHHHHHHHhcCCcEEEEEEec
Q 025154 34 SNIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 34 ~~ikV~V~Ga~GrM-G~~i~~~i~~~~~~eLvg~vd~ 69 (257)
..-||.|+|+ |+| |+.+++.+.+ .+.++ -++++
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~-~g~~V-~v~~r 76 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLN-RNATV-TVCHS 76 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhh-CCCEE-EEEEC
Confidence 3469999995 998 8889988875 46653 34544
No 490
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=85.94 E-value=4.5 Score=37.98 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=27.4
Q ss_pred eEEEEcCCChHHHHHHHHHHhcCCcEEEEEEec
Q 025154 37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS 69 (257)
Q Consensus 37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~ 69 (257)
-|.|.+|+|..|+.+.+ ++...++++||+.-.
T Consensus 153 tvvVSaAaGaVGsvvgQ-iAKlkG~rVVGiaGg 184 (340)
T COG2130 153 TVVVSAAAGAVGSVVGQ-IAKLKGCRVVGIAGG 184 (340)
T ss_pred EEEEEecccccchHHHH-HHHhhCCeEEEecCC
Confidence 48899999999999997 456899999998753
No 491
>PRK12827 short chain dehydrogenase; Provisional
Probab=85.91 E-value=5.7 Score=33.91 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=50.0
Q ss_pred CceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEc
Q 025154 35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF 113 (257)
Q Consensus 35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDF 113 (257)
+++|.|+|++|.+|+.+++.+.+ .+.+++.+........+..+ .+.+.+.. ....+. +..|+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~Dl 68 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAA-DGADVIVLDIHPMRGRAEAD--------------AVAAGIEA--AGGKALGLAFDV 68 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHH-CCCeEEEEcCcccccHHHHH--------------HHHHHHHh--cCCcEEEEEccC
Confidence 36899999999999999998875 57777654321110100000 00011110 001222 34677
Q ss_pred CChHhHHHHHHHHHHc--CCCeEEeCCCC
Q 025154 114 TDASTVYDNVKQATAF--GMRSVVYVPHI 140 (257)
Q Consensus 114 T~p~~~~~~~~~a~~~--Gi~vViGTTG~ 140 (257)
+.++.....+..+.+. ++..|+=..|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 69 RDFAATRAALDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 7777777766665553 56777766653
No 492
>PRK07890 short chain dehydrogenase; Provisional
Probab=85.89 E-value=3.9 Score=35.34 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~-~G~~V~~~ 35 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAAR-AGADVVLA 35 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHH-cCCEEEEE
Confidence 5799999999999999998874 57777643
No 493
>PRK12743 oxidoreductase; Provisional
Probab=85.86 E-value=9.6 Score=33.18 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=49.1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeeeecCHHHHHhccccCCCcc-EEEEcC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT 114 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VvIDFT 114 (257)
-+|.|.|++|.+|+.+++.+.+ .+.+++....+.. .....+. +++... +..++ +-+|++
T Consensus 3 k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~--~~~~~~~--------------~~~~~~---~~~~~~~~~Dl~ 62 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDE--EGAKETA--------------EEVRSH---GVRAEIRQLDLS 62 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCCh--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence 3689999999999999999885 5788866544321 1111110 011100 01233 246788
Q ss_pred ChHhHHHHHHHHHHc--CCCeEEeCCC
Q 025154 115 DASTVYDNVKQATAF--GMRSVVYVPH 139 (257)
Q Consensus 115 ~p~~~~~~~~~a~~~--Gi~vViGTTG 139 (257)
.++.....+..+.+. .+.+|+-..|
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag 89 (256)
T PRK12743 63 DLPEGAQALDKLIQRLGRIDVLVNNAG 89 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 888777766655442 4667766554
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=85.82 E-value=7.1 Score=34.01 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=51.2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCeee-ecCH-HHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDL-TMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~~~gv~v-~~dl-~~~l~~~~~~~~~DVvIDF 113 (257)
-||.|+|+ |++|..-++.+.+ .+..++ ++++.. ..+..++.. ...+.. ..++ .+.+ ..+|.||-.
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~-~ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl------~~~~lVi~a 76 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLK-AGAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADIL------EGAFLVIAA 76 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHH-CCCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHh------CCcEEEEEC
Confidence 38999996 9999998888775 566554 555432 233333331 123332 1121 1223 267877766
Q ss_pred CC-hHhHHHHHHHHHHcCCCeE
Q 025154 114 TD-ASTVYDNVKQATAFGMRSV 134 (257)
Q Consensus 114 T~-p~~~~~~~~~a~~~Gi~vV 134 (257)
|. ++.-......|.+.|+++-
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVN 98 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEE
Confidence 64 4455667778888888874
No 495
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.60 E-value=11 Score=32.37 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI 67 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v 67 (257)
.++.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus 7 k~vlItGasggiG~~l~~~l~~-~G~~V~~~~ 37 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAG-AGAHVVVNY 37 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHH-CCCEEEEEe
Confidence 4799999999999999998874 578877654
No 496
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.44 E-value=4.2 Score=35.92 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=27.0
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcE--EEEEEecC
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSH 70 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~ 70 (257)
.||.|+|| |.+|+.++..+.. .++. =+.++|+.
T Consensus 26 ~rvlvlGA-GgAg~aiA~~L~~-~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGA-GAAGIAIARLLLA-AGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECc-hHHHHHHHHHHHH-cCcCcceEEEEeCC
Confidence 58999996 9999999998874 4766 56788865
No 497
>PRK06823 ornithine cyclodeaminase; Validated
Probab=85.35 E-value=2.6 Score=39.26 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=58.7
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--CCCeeeecCHHHHHhccccCCCccEEEEc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSISQSKARAVVIDF 113 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~~g~~~--~~gv~v~~dl~~~l~~~~~~~~~DVvIDF 113 (257)
-+++|+| +|.+++.+++++..-..++=+-++++.. ..+..+..... ...+.+.++.++++. ++|||+-.
T Consensus 129 ~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta 199 (315)
T PRK06823 129 SAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT 199 (315)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence 4899999 5999999999998877788888887541 11111111001 234555789999885 79999866
Q ss_pred CChHhHHHHH-HHHHHcCCCeE-EeC
Q 025154 114 TDASTVYDNV-KQATAFGMRSV-VYV 137 (257)
Q Consensus 114 T~p~~~~~~~-~~a~~~Gi~vV-iGT 137 (257)
|.... ..+ ...++-|.+|. ||+
T Consensus 200 T~s~~--P~~~~~~l~~G~hi~~iGs 223 (315)
T PRK06823 200 TPSRE--PLLQAEDIQPGTHITAVGA 223 (315)
T ss_pred cCCCC--ceeCHHHcCCCcEEEecCC
Confidence 63211 222 23457888876 553
No 498
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.34 E-value=4.8 Score=34.66 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.4
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~ 66 (257)
.+|.|+|++|.+|+.+++.+.+ .+.+++..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~-~g~~v~~~ 34 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAK-EGAKVVIA 34 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHH-CCCeEEEE
Confidence 4799999999999999999875 57887654
No 499
>PLN02928 oxidoreductase family protein
Probab=85.26 E-value=2.4 Score=39.97 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=41.3
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCeeeecCHHHHHhccccCCCc
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSKAR 107 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~~--------~g~~~~~gv~v~~dl~~~l~~~~~~~~~ 107 (257)
.+|+|+| +|+||+.+++.+. .-++++++ +|+.. ..+.... .......+ -+.++++++. .+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~-afG~~V~~-~dr~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell~------~a 227 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLR-PFGVKLLA-TRRSW-TSEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFAG------EA 227 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHh-hCCCEEEE-ECCCC-ChhhhhhhccccccccccccccC--cccCHHHHHh------hC
Confidence 5899999 6999999999876 56888875 45431 0100000 00000011 3568999995 68
Q ss_pred cEEEEcC
Q 025154 108 AVVIDFT 114 (257)
Q Consensus 108 DVvIDFT 114 (257)
|+|+-..
T Consensus 228 DiVvl~l 234 (347)
T PLN02928 228 DIVVLCC 234 (347)
T ss_pred CEEEECC
Confidence 9888543
No 500
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.19 E-value=12 Score=34.64 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=50.8
Q ss_pred ceEEEEcCCChHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCe--ee-e--cCHHHHHhccccCCCccE
Q 025154 36 IKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEI--PV-M--SDLTMVLGSISQSKARAV 109 (257)
Q Consensus 36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~~~g~~~~~gv--~v-~--~dl~~~l~~~~~~~~~DV 109 (257)
-+|.|.|+ |.+|...++.+. ..+.+ +++ +++.. .. .+++ .++|. .+ + .+..+.+.++..+..+|+
T Consensus 178 ~~VlV~G~-g~vG~~a~~~ak-~~G~~~Vi~-~~~~~--~~-~~~~---~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 178 DSVAVIGC-GGVGDAAIAGAA-LAGASKIIA-VDIDD--RK-LEWA---REFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CEEEEECC-CHHHHHHHHHHH-HcCCCeEEE-EcCCH--HH-HHHH---HHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 37999996 999999998665 45775 554 44321 00 1111 01221 11 1 122222211111235899
Q ss_pred EEEcCC-hHhHHHHHHHHHHcCCCeEEeCC
Q 025154 110 VIDFTD-ASTVYDNVKQATAFGMRSVVYVP 138 (257)
Q Consensus 110 vIDFT~-p~~~~~~~~~a~~~Gi~vViGTT 138 (257)
+||++- ++.....+..+...|.=+++|.+
T Consensus 249 vid~~g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 249 VIDAVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred EEECCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 999986 55555555555556766667765
Done!