BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025155
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZVC|A Chain A, X-Ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25760
Length = 189
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 140/183 (76%), Gaps = 2/183 (1%)
Query: 76 DSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIG 135
++ P +KVQEL VYEIN+ DR+SP ILK + +GDLVPFTNKLYTGDL+KR+G
Sbjct: 8 NTENPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVG 66
Query: 136 ITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGV 195
ITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG
Sbjct: 67 ITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGA 126
Query: 196 YGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISN 254
YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+ PV PS V +SN
Sbjct: 127 YGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSN 186
Query: 255 FTN 257
FTN
Sbjct: 187 FTN 189
>pdb|1Z8K|A Chain A, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|1Z8K|B Chain B, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|1Z8K|C Chain C, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis
Thaliana At3g25770
pdb|2Q4I|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
pdb|2Q4I|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
pdb|2Q4I|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770
Length = 193
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/179 (66%), Positives = 138/179 (77%), Gaps = 2/179 (1%)
Query: 80 PANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAG 139
P +KVQEL VYEINE DR+SP ILK + +GDLVPFTNKLYTGDL+KR+GITAG
Sbjct: 16 PRPSKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAG 74
Query: 140 LCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQV 199
LCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQV
Sbjct: 75 LCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQV 134
Query: 200 KLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
KL Q+V+P KLFYTFYLKG+A DLP EL PV PS + ISN+TN
Sbjct: 135 KLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 193
>pdb|2GIN|A Chain A, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|B Chain B, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|C Chain C, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|D Chain D, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|E Chain E, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
pdb|2GIN|F Chain F, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From
Arabidopsis Thaliana
Length = 188
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83 NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
+KVQEL VYEINE DR+SP ILK + +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14 SKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
Q+V+P KLFYTFYLKG+A DLP EL PV PS + ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|2DIO|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
pdb|2DIO|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound
Inhibitor Vernolic Acid
Length = 188
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83 NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
+KVQEL VYEINE DR+SP ILK + +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14 SKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
Q+V+P KLFYTFYLKG+A DLP EL PV PS + ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|2BRJ|A Chain A, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|B Chain B, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
pdb|2BRJ|C Chain C, X-Ray Structure Of The Allene Oxide Cyclase From
Arabidopsis Thaliana
Length = 188
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83 NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
+KVQEL VYEINE DR+SP ILK + +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14 SKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL
Sbjct: 73 VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
Q+V+P KLFYTFYLKG+A DLP EL PV PS + ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188
>pdb|4H6B|A Chain A, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|D Chain D, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|C Chain C, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|B Chain B, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|E Chain E, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|F Chain F, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|G Chain G, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|H Chain H, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|I Chain I, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|J Chain J, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|K Chain K, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|L Chain L, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6C|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|G Chain G, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|H Chain H, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|I Chain I, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|J Chain J, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|K Chain K, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|L Chain L, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
Length = 195
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 126/178 (70%), Gaps = 6/178 (3%)
Query: 85 VQELFVYEINERDRNSPAILKLSQKPEHLT------IGDLVPFTNKLYTGDLQKRIGITA 138
VQELFVYEINERDR SP L K + T +GDLVPF+NK+Y G L+ R+GITA
Sbjct: 17 VQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITA 76
Query: 139 GLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQ 198
GLC LI H +K GDR+EA+YSFYFGDYGHISVQG Y+TYED+YLA+TGGSGIF G YGQ
Sbjct: 77 GLCTLISHSDQKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQ 136
Query: 199 VKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFT 256
KLHQI+FP+KLFYTFYL+G+ LP+ L V PSP+V NFT
Sbjct: 137 AKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSVAPADEAKQCLPNHVAPNFT 194
>pdb|4H69|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H6A|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
Length = 194
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/178 (60%), Positives = 124/178 (69%), Gaps = 5/178 (2%)
Query: 85 VQELFVYEINERDRNSPAILKLSQKPEHL-----TIGDLVPFTNKLYTGDLQKRIGITAG 139
VQEL VYEINERDR SP IL K + ++GDLVPF+NK+Y G LQ+R+GITAG
Sbjct: 17 VQELSVYEINERDRGSPVILPFGGKKDENGAHANSLGDLVPFSNKVYDGSLQRRLGITAG 76
Query: 140 LCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQV 199
+C LI H EKKGDR+EA YSFYFGDYGHISVQG Y+TYEDT L VTGG+GIF G +G
Sbjct: 77 ICTLISHNAEKKGDRYEAQYSFYFGDYGHISVQGPYITYEDTELVVTGGTGIFAGCHGVA 136
Query: 200 KLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
KLHQI+FP KLFYTFYL+G+ LP+EL V PSP+ NFTN
Sbjct: 137 KLHQIIFPVKLFYTFYLQGIKKLPEELCASVVPPSPSAEPSEQAKKCHPSSVAPNFTN 194
>pdb|2O6A|A Chain A, Crystal Structure Of The Haemophilus Influenzae E57a
Mutant Fbpa
Length = 309
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTAQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|3KN8|A Chain A, Crystal Structure Of Haemophilus Influenzae Y196a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|3KN7|A Chain A, Crystal Structure Of Haemophilus Influenzae Y195a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|2O68|A Chain A, Crystal Structure Of Haemophilus Influenzae Q58l Mutant
Fbpa
Length = 309
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTELTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|1D9V|A Chain A, Haemophilus Influenzae Ferric-Binding Protein Apo Form
pdb|1MRP|A Chain A, Ferric-Binding Protein From Haemophilus Influenzae
pdb|3OD7|A Chain A, Haemophilus Influenzae Ferric Binding Protein A -Iron
Loaded
pdb|3ODB|A Chain A, Haemophilus Influenzae Ferric Binding Protein A -Iron
Loaded -Open Conformation
Length = 309
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|1QW0|A Chain A, Crystal Structure Of Haemophilus Influenzae N175l Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|2O69|A Chain A, Crystal Structure Of Haemophilus Influenzae N193l Mutant
Fbpa
Length = 309
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 160 SFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV 219
+ Y G + + A ++T + VT SG E + GQ+K P +FYT
Sbjct: 3 TVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATF 62
Query: 220 ADLPQELLVKPV 231
ADL + L+ P+
Sbjct: 63 ADLSEAGLLAPI 74
>pdb|1NNF|A Chain A, Crystal Structure Analysis Of Haemophlius Influenzae
Ferric- Ion Binding Protein H9q Mutant Form
Length = 309
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 179 EDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPV 231
++T + VT SG E + GQ+K P +FYT ADL + L+ P+
Sbjct: 22 QETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPI 74
>pdb|1QVS|A Chain A, Crystal Structure Of Haemophilus Influenzae H9a Mutant
Holo Ferric Ion-Binding Protein A
Length = 309
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 179 EDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPV 231
++T + VT SG E + GQ+K P +FYT ADL + L+ P+
Sbjct: 22 QETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPI 74
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 181 TYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSP 235
T++A GG+ F G + L V PY T+ L G A L QE +P P P
Sbjct: 534 TFMAGWGGA--FSTFAGALSLRAGVQPYAQVLTYKLGGTAKL-QEPAPRPDTPKP 585
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,989,182
Number of Sequences: 62578
Number of extensions: 299625
Number of successful extensions: 561
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 25
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)