BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025155
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana
GN=AOC3 PE=2 SV=1
Length = 258
Score = 302 bits (773), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/261 (62%), Positives = 192/261 (73%), Gaps = 12/261 (4%)
Query: 2 ASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---- 57
++A SL+ IS + SR+ S LLGF SF +NL +S+ D S RS
Sbjct: 5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTS 60
Query: 58 KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGD 117
KN T+AFF+N + ++SRP+ K+QEL VYE+NE DRNSPA+LKL +KP L +GD
Sbjct: 61 KNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117
Query: 118 LVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLT 177
LVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLT
Sbjct: 118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177
Query: 178 YEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPT 236
YEDT+LAVTGGSGIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL V PS
Sbjct: 178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237
Query: 237 VEAAPAAKATEPHAAISNFTN 257
V+ AP AKA EP ISNFTN
Sbjct: 238 VKPAPEAKAMEPSGVISNFTN 258
>sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana
GN=AOC4 PE=2 SV=1
Length = 254
Score = 296 bits (759), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 156/241 (64%), Positives = 177/241 (73%), Gaps = 8/241 (3%)
Query: 19 SRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFN-KPSSQPDS 77
SR+ S LGF SF N +S+ +S R+ +T FF SS D
Sbjct: 20 SRNHQSHQSTFLGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDY 75
Query: 78 SRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGIT 137
SRP K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGIT
Sbjct: 76 SRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGIT 133
Query: 138 AGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 197
AGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YG
Sbjct: 134 AGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYG 193
Query: 198 QVKLHQIVFPYKLFYTFYLKGV-ADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFT 256
QVKL Q+V+P KLFYTFYLKGV ADLP EL K VEPS V+ A A+AT+P A I+NFT
Sbjct: 194 QVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFT 253
Query: 257 N 257
N
Sbjct: 254 N 254
>sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana
GN=AOC2 PE=1 SV=1
Length = 253
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/263 (58%), Positives = 184/263 (69%), Gaps = 19/263 (7%)
Query: 2 ASASSLKPISYSLNLPNSRSSSSETQR--LLGFKSSFSSHHRNLSLSTTHQDVSRRSS-- 57
+SA SL+ IS + N+ S + + R LLG SF +NL +S+ D S SS
Sbjct: 3 SSAVSLQSIS--MTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFT 56
Query: 58 --KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTI 115
KN ++A N P RP+ KVQEL VYEINE DR+SP ILK + +
Sbjct: 57 AKKNLTASRALSQNGNIENP---RPS--KVQELSVYEINELDRHSPKILK-NAFSLMFGL 110
Query: 116 GDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAY 175
GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG Y
Sbjct: 111 GDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPY 170
Query: 176 LTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPS 234
LTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL PV PS
Sbjct: 171 LTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPS 230
Query: 235 PTVEAAPAAKATEPHAAISNFTN 257
+E AP AKA EP ISN+TN
Sbjct: 231 KDIEPAPEAKALEPSGVISNYTN 253
>sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana
GN=AOC1 PE=1 SV=1
Length = 254
Score = 263 bits (673), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 180/260 (69%), Gaps = 9/260 (3%)
Query: 1 MASASSLKPISYSLNLPNSRSSSSETQR--LLGFKSSFSSHHRNLSLSTTHQDVSRRSSK 58
MAS S++ S S+ N+ S S + R LLGF SF + + + + S K
Sbjct: 1 MAS-STISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTSFTPKK 59
Query: 59 NNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDL 118
T+A N +++ P +KVQEL VYEIN+ DR+SP ILK + +GDL
Sbjct: 60 KLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDL 114
Query: 119 VPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTY 178
VPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTY
Sbjct: 115 VPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTY 174
Query: 179 EDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTV 237
ED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+ PV PS V
Sbjct: 175 EDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDV 234
Query: 238 EAAPAAKATEPHAAISNFTN 257
E AP AKA +P +SNFTN
Sbjct: 235 EPAPEAKALKPSGVVSNFTN 254
>sp|Q1ZXD6|ROCO5_DICDI Probable serine/threonine-protein kinase roco5 OS=Dictyostelium
discoideum GN=roco5 PE=3 SV=1
Length = 2800
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 34/157 (21%)
Query: 93 INERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKG 152
++ER+ N+P I+ LS+ E + I +P T+ D K +G+ ++ +P+
Sbjct: 1483 LSEREMNTPPIITLSEFTE-MAISCGIPQTSITAAADFLKELGV-----IVYFDDPKSGL 1536
Query: 153 DRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFY 212
D+F I + +LT + + + + GV Q LHQI P
Sbjct: 1537 DQF-------------IFIDPPWLTRLMATIITSKPNFVQSGVLDQSNLHQIWKP----- 1578
Query: 213 TFYLKGVADLPQEL---LVKPVEPSPTVEAAPAAKAT 246
D PQ L L+ ++ V P KAT
Sbjct: 1579 -------PDFPQHLHHVLLAILQKFEIVHPLPDPKAT 1608
>sp|Q04G54|TRUA_OENOB tRNA pseudouridine synthase A OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=truA PE=3 SV=1
Length = 252
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 181 TYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV-ADLPQELLVKPVEPSP 235
T + V G S GV+ ++ +FP+ L L G+ + LP ++LVK VE P
Sbjct: 43 TKIKVIGASRTDAGVHANGQVINFIFPFDLNEKAILMGMNSQLPTDILVKKVEKVP 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,813,288
Number of Sequences: 539616
Number of extensions: 4181594
Number of successful extensions: 10869
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10813
Number of HSP's gapped (non-prelim): 67
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)