Query 025155
Match_columns 257
No_of_seqs 59 out of 61
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 04:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h6b_A Allene oxide cyclase; B 100.0 4E-101 1E-105 663.4 17.9 181 75-257 9-195 (195)
2 2brj_A Arabidopsis thaliana ge 100.0 2.1E-97 7E-102 637.6 17.3 176 79-257 12-188 (188)
3 3a1f_A Cytochrome B-245 heavy 65.3 1.1 3.8E-05 33.8 -0.4 14 179-192 17-30 (186)
4 1umk_A B5R, NADH-cytochrome B5 61.6 4.2 0.00014 33.1 2.4 14 179-192 146-159 (275)
5 2eix_A NADH-cytochrome B5 redu 56.9 6 0.00021 31.5 2.5 25 168-192 99-129 (243)
6 2cnd_A NADH-dependent nitrate 49.9 9 0.00031 31.0 2.5 14 179-192 136-149 (270)
7 1tvc_A Methane monooxygenase c 49.7 9.6 0.00033 30.6 2.6 25 168-192 100-130 (250)
8 3lrx_A Putative hydrogenase; a 45.1 7.3 0.00025 30.2 1.2 22 170-191 9-35 (158)
9 3lyu_A Putative hydrogenase; t 45.0 7.4 0.00025 29.8 1.2 23 169-191 3-30 (142)
10 4eh1_A Flavohemoprotein; struc 44.4 13 0.00044 29.4 2.6 24 168-191 98-126 (243)
11 1qfj_A Protein (flavin reducta 41.1 16 0.00055 28.8 2.6 25 168-192 85-115 (232)
12 2bmw_A Ferredoxin--NADP reduct 40.3 15 0.00052 30.4 2.5 24 168-191 130-160 (304)
13 1ep3_B Dihydroorotate dehydrog 39.9 17 0.00059 29.6 2.7 25 168-192 91-123 (262)
14 2r6h_A NADH:ubiquinone oxidore 39.1 17 0.00058 29.7 2.5 23 169-191 141-168 (290)
15 2bgi_A Ferredoxin-NADP(H) redu 36.5 21 0.00071 29.3 2.7 13 180-192 121-133 (272)
16 2qdx_A Ferredoxin reductase; o 35.9 20 0.00067 28.9 2.4 13 179-191 106-118 (257)
17 1fdr_A Flavodoxin reductase; f 35.7 22 0.00076 28.3 2.7 25 168-192 87-119 (248)
18 3lo8_A Ferredoxin--NADP reduct 34.8 23 0.00077 29.6 2.7 24 168-191 141-172 (311)
19 4fk8_A Ferredoxin--NADP reduct 34.4 24 0.00082 28.6 2.7 24 168-191 103-134 (271)
20 2pia_A Phthalate dioxygenase r 34.3 20 0.00067 30.5 2.3 25 168-192 95-124 (321)
21 1fnb_A Ferredoxin-NADP+ reduct 33.1 25 0.00085 29.5 2.7 24 168-191 144-174 (314)
22 1krh_A Benzoate 1,2-dioxygenas 32.9 24 0.00082 29.8 2.6 25 168-192 194-223 (338)
23 3jqq_A Ferredoxin NADP reducta 32.7 25 0.00087 29.9 2.7 24 168-191 150-182 (316)
24 2rc5_A Ferredoxin-NADP reducta 32.5 26 0.0009 29.2 2.7 25 168-192 146-178 (314)
25 3vo2_A Putative uncharacterize 29.1 32 0.0011 28.9 2.7 24 168-191 140-170 (310)
26 2gpj_A Siderophore-interacting 27.5 34 0.0012 28.0 2.5 25 168-192 96-125 (252)
27 4g1v_A Flavohemoglobin; three 25.5 38 0.0013 29.5 2.6 12 180-191 273-284 (399)
28 1cqx_A Flavohemoprotein; globi 22.4 44 0.0015 28.9 2.4 24 168-191 249-278 (403)
29 2b5o_A FNR, ferredoxin--NADP r 20.7 51 0.0018 29.3 2.5 25 168-192 232-263 (402)
No 1
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=100.00 E-value=3.7e-101 Score=663.35 Aligned_cols=181 Identities=62% Similarity=1.107 Sum_probs=171.6
Q ss_pred CCCCCccccceeEEEEEEecccCCCCcceEeeCCCccc------ccccCccccccccccccccceeceeeeeEEEEeecc
Q 025155 75 PDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEH------LTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEP 148 (257)
Q Consensus 75 ~~~~~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~------nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~p 148 (257)
+++++|+ |||||+|||||||||+||||||||||..+ |+|||||||+|||||++|++|||||+|+|++|||+|
T Consensus 9 ~~~~~p~--~vqel~VyEiNE~dr~sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l~~RiGitaG~Cv~i~~~~ 86 (195)
T 4h6b_A 9 ARGASPG--HVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITAGLCTLISHSD 86 (195)
T ss_dssp ---------CCEEEEEEEECCSCSCCCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTSCCEEEEEEEEEEEEEEET
T ss_pred ccCCCCc--eeEEEEEEEecccccCCcceeecccccCccccccccccccccccccccccccccccccccccEEEEEeecC
Confidence 3688999 99999999999999999999999999832 899999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCCCChhhhhc
Q 025155 149 EKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLV 228 (257)
Q Consensus 149 ek~GdryEa~ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~dlp~el~~ 228 (257)
||+||||||+|||||||||||+|||||+||||+|||||||||||+||+|||||||||||||||||||||||||||+||++
T Consensus 87 ~k~GdryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~pfklfytfyl~gi~~lp~~l~~ 166 (195)
T 4h6b_A 87 QKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCA 166 (195)
T ss_dssp TTTEEEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEETTTEEEEEEEEESSCCCCGGGCS
T ss_pred CCCCceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeeeeeeEEEEEEecccccchHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccChhhhccCCccccCCCCC
Q 025155 229 KPVEPSPTVEAAPAAKATEPHAAISNFTN 257 (257)
Q Consensus 229 ~~v~ps~~vep~p~aka~~p~a~~~nft~ 257 (257)
+||+|+|+|||+|+|||||||++++|||.
T Consensus 167 ~~v~p~~~vep~~~ak~~~p~~~~~nft~ 195 (195)
T 4h6b_A 167 PCVPPSPSVAPADEAKQCLPNHVAPNFTK 195 (195)
T ss_dssp CCCCCCTTCCCCHHHHTTCTTSBCTTCCC
T ss_pred CCCCCCCCCCcChhHhhcCCccccccccC
Confidence 99999999999999999999999999995
No 2
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=100.00 E-value=2.1e-97 Score=637.60 Aligned_cols=176 Identities=72% Similarity=1.185 Sum_probs=172.3
Q ss_pred CccccceeEEEEEEecccCCCCcceEeeCCCcccccccCccccccccccccccceeceeeeeEEEEeeccCCCCCEEEEE
Q 025155 79 RPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAI 158 (257)
Q Consensus 79 ~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~pek~GdryEa~ 158 (257)
.|+ |||||+|||||||||+||||||||||++ |++||||||+|||||||+++|||||+|+|++|||+|+++||||||+
T Consensus 12 ~~~--~vq~l~vye~NE~dr~sPa~L~l~~k~~-~slGDlvpFsNkLydg~l~~rvG~taG~Cv~~~~~p~~~gdryE~t 88 (188)
T 2brj_A 12 SPS--KVQELSVYEINELDRHSPKILKNAFSLM-FGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEAT 88 (188)
T ss_dssp -----CCEEEEEEEECCSCSCCCCCBCCCSSSS-SCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEE
T ss_pred Ccc--ceEEEEEEEecccccCCCceEEcccccC-cCcccEEeecccccccccceeccccceEEEEEEecCCCCCcEEEEE
Confidence 467 9999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCC-CChhhhhcCCCCCCCCC
Q 025155 159 YSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTV 237 (257)
Q Consensus 159 ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~-dlp~el~~~~v~ps~~v 237 (257)
|||||||||||||||||+||||+|||||||||||+|||||||||||+||||+|||||||||| |||+||+++||+|||+|
T Consensus 89 yS~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P~k~~yTf~L~gi~~~lp~~l~~~~v~p~~~v 168 (188)
T 2brj_A 89 YSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDI 168 (188)
T ss_dssp EEEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTC
T ss_pred EEEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccCceEEEEEEEecCcccCcHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccChhhhccCCccccCCCCC
Q 025155 238 EAAPAAKATEPHAAISNFTN 257 (257)
Q Consensus 238 ep~p~aka~~p~a~~~nft~ 257 (257)
||+|+||||||+++++||||
T Consensus 169 ep~~~a~~~~p~~~~~n~t~ 188 (188)
T 2brj_A 169 EPAPEAKALEPSGVISNYTN 188 (188)
T ss_dssp CCCHHHHTTCGGGBCTTCCC
T ss_pred CcChHHhhcCCcccccccCC
Confidence 99999999999999999997
No 3
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=65.26 E-value=1.1 Score=33.77 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.6
Q ss_pred cccEEEEeccceee
Q 025155 179 EDTYLAVTGGSGIF 192 (257)
Q Consensus 179 eDtyLAVTGGTGiF 192 (257)
.+..+-|.||+||=
T Consensus 17 ~~~~vlIagG~GIt 30 (186)
T 3a1f_A 17 YEVVMLVGAGIGVT 30 (186)
T ss_dssp SSEEEEEEEGGGHH
T ss_pred CCeEEEEecCccHH
Confidence 35699999999984
No 4
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=61.62 E-value=4.2 Score=33.12 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.6
Q ss_pred cccEEEEeccceee
Q 025155 179 EDTYLAVTGGSGIF 192 (257)
Q Consensus 179 eDtyLAVTGGTGiF 192 (257)
.+.++-|.||+||=
T Consensus 146 ~~~~vliagGtGIa 159 (275)
T 1umk_A 146 VKSVGMIAGGTGIT 159 (275)
T ss_dssp CSEEEEEEEGGGHH
T ss_pred CceEEEEecCccHh
Confidence 45799999999983
No 5
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=56.86 E-value=6 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=18.1
Q ss_pred eEEEeceeccc------cccEEEEeccceee
Q 025155 168 HISVQGAYLTY------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~------eDtyLAVTGGTGiF 192 (257)
.|.|.|||=++ .+.++.|.||+||=
T Consensus 99 ~v~v~gP~G~f~~~~~~~~~~vliagG~Gia 129 (243)
T 2eix_A 99 FLQVRGPKGQFDYKPNMVKEMGMIAGGTGIT 129 (243)
T ss_dssp EEEEEEEECSCCCCTTSSSEEEEEEEGGGHH
T ss_pred EEEEECCeEEEEeCCCCCcEEEEEecCccHH
Confidence 56677776433 25689999999984
No 6
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=49.87 E-value=9 Score=30.98 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.6
Q ss_pred cccEEEEeccceee
Q 025155 179 EDTYLAVTGGSGIF 192 (257)
Q Consensus 179 eDtyLAVTGGTGiF 192 (257)
.+.++.|.|||||=
T Consensus 136 ~~~~vliagGtGia 149 (270)
T 2cnd_A 136 ARRLAMICGGSGIT 149 (270)
T ss_dssp CSEEEEEEEGGGHH
T ss_pred CCEEEEEeccccHH
Confidence 45699999999983
No 7
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=49.74 E-value=9.6 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=17.9
Q ss_pred eEEEeceeccc------cccEEEEeccceee
Q 025155 168 HISVQGAYLTY------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~------eDtyLAVTGGTGiF 192 (257)
.|.|.|||=++ .+.++.|.||+||=
T Consensus 100 ~v~v~gP~G~~~~~~~~~~~~vliagGtGia 130 (250)
T 1tvc_A 100 VLSVKGPLGVFGLKERGMAPRYFVAGGTGLA 130 (250)
T ss_dssp EEEEEEEECCCSCCCCSSSCEEEEEESSTTH
T ss_pred EEEEEcCccccccCccCCceEEEEEeccCHH
Confidence 56666776433 25699999999983
No 8
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=45.05 E-value=7.3 Score=30.24 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=14.0
Q ss_pred EEeceeccc-----cccEEEEecccee
Q 025155 170 SVQGAYLTY-----EDTYLAVTGGSGI 191 (257)
Q Consensus 170 SvqGpylt~-----eDtyLAVTGGTGi 191 (257)
.|.|||=++ ...++.|.||+||
T Consensus 9 ~v~gP~G~~f~~~~~~~~llIaGG~GI 35 (158)
T 3lrx_A 9 NVAGPLGTPVPMEKFGKILAIGAYTGI 35 (158)
T ss_dssp ---CCCCCCBCCCCCSEEEEEEETTHH
T ss_pred EEECCCCCCCccCCCCeEEEEEccCcH
Confidence 788887331 3468999999996
No 9
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=45.01 E-value=7.4 Score=29.80 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=13.9
Q ss_pred EEEeceeccc-----cccEEEEecccee
Q 025155 169 ISVQGAYLTY-----EDTYLAVTGGSGI 191 (257)
Q Consensus 169 ISvqGpylt~-----eDtyLAVTGGTGi 191 (257)
+.|.|||=++ ...++.|.||+||
T Consensus 3 ~~v~GP~G~~~~~~~~~~~llIaGG~Gi 30 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEKFGKILAIGAYTGI 30 (142)
T ss_dssp ----CCCSCCBCCCCCSEEEEEEETTHH
T ss_pred eeeeCCCCCCccCCCCCeEEEEECcCcH
Confidence 3566776432 2468999999996
No 10
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=44.39 E-value=13 Score=29.45 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=16.4
Q ss_pred eEEEeceeccc-----cccEEEEecccee
Q 025155 168 HISVQGAYLTY-----EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~-----eDtyLAVTGGTGi 191 (257)
.|.|.|||=.+ .+.++-|.||+||
T Consensus 98 ~v~v~gP~G~~~~~~~~~~~vliagGtGi 126 (243)
T 4eh1_A 98 SVKLYAPAGDFFYVERERPVVLISAGVGA 126 (243)
T ss_dssp EEEEEEEECSCCCCCCSSCEEEEEEGGGH
T ss_pred EEEEEccCcccCcCCCCCCEEEEEccccH
Confidence 34555555432 4579999999997
No 11
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=41.10 E-value=16 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.8
Q ss_pred eEEEeceeccc------cccEEEEeccceee
Q 025155 168 HISVQGAYLTY------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~------eDtyLAVTGGTGiF 192 (257)
.|.|.|||=++ .+.++-|.||+||=
T Consensus 85 ~v~v~gP~G~~~~~~~~~~~~vliagG~Git 115 (232)
T 1qfj_A 85 QIVVDIPHGEAWLRDDEERPMILIAGGTGFS 115 (232)
T ss_dssp EEEEEEEECSCCCCSCSSSCEEEEEETTCHH
T ss_pred EEEEeCCccceEeCCCCCCcEEEEEecccHh
Confidence 46666776432 35699999999983
No 12
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=40.29 E-value=15 Score=30.45 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=16.6
Q ss_pred eEEEeceeccc-------cccEEEEecccee
Q 025155 168 HISVQGAYLTY-------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~-------eDtyLAVTGGTGi 191 (257)
.|.|.|||=.+ .+.++.|-|||||
T Consensus 130 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 160 (304)
T 2bmw_A 130 EVKITGPVGKEMLLPDDPEANVIMLAGGTGI 160 (304)
T ss_dssp EEEEEEEECSSSCCCSCTTCEEEEEEEGGGH
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEecCccH
Confidence 35666665321 2468999999997
No 13
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=39.91 E-value=17 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=17.6
Q ss_pred eEEEeceecc---c-----cccEEEEeccceee
Q 025155 168 HISVQGAYLT---Y-----EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt---~-----eDtyLAVTGGTGiF 192 (257)
.|.|.|||=+ . .+.++-|.|||||=
T Consensus 91 ~v~v~gP~G~~f~l~~~~~~~~~lliagGtGit 123 (262)
T 1ep3_B 91 KVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVP 123 (262)
T ss_dssp EEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSH
T ss_pred EEEEEcccCCCccCCCccCCCeEEEEECcCcHH
Confidence 4666777632 2 34599999999983
No 14
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=39.07 E-value=17 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=16.2
Q ss_pred EEEeceeccc-----cccEEEEecccee
Q 025155 169 ISVQGAYLTY-----EDTYLAVTGGSGI 191 (257)
Q Consensus 169 ISvqGpylt~-----eDtyLAVTGGTGi 191 (257)
|.|.|||=++ .+.++-|.|||||
T Consensus 141 v~v~gP~G~f~~~~~~~~~vliagGtGi 168 (290)
T 2r6h_A 141 VMMSGPYGDFHIQDTDAEMLYIGGGAGM 168 (290)
T ss_dssp EEEEEEECCCCCCSSSCEEEEEEEGGGH
T ss_pred EEEEecccCCcCCCCCCeEEEEECccCH
Confidence 5555555333 4569999999998
No 15
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=36.54 E-value=21 Score=29.30 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.2
Q ss_pred ccEEEEeccceee
Q 025155 180 DTYLAVTGGSGIF 192 (257)
Q Consensus 180 DtyLAVTGGTGiF 192 (257)
+.++-|.||+||=
T Consensus 121 ~~~vliagG~Gia 133 (272)
T 2bgi_A 121 KRLWFLATGTGIA 133 (272)
T ss_dssp SEEEEEEEGGGGH
T ss_pred CeEEEEeecccHH
Confidence 5699999999983
No 16
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=35.88 E-value=20 Score=28.92 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=11.2
Q ss_pred cccEEEEecccee
Q 025155 179 EDTYLAVTGGSGI 191 (257)
Q Consensus 179 eDtyLAVTGGTGi 191 (257)
.+.++-|.||+||
T Consensus 106 ~~~~vliagG~Gi 118 (257)
T 2qdx_A 106 GKHLYLLSTGTGM 118 (257)
T ss_dssp CSEEEEEEEGGGG
T ss_pred CCeEEEEEeceEH
Confidence 3569999999998
No 17
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=35.66 E-value=22 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=17.0
Q ss_pred eEEEe-ceeccc-------cccEEEEeccceee
Q 025155 168 HISVQ-GAYLTY-------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvq-Gpylt~-------eDtyLAVTGGTGiF 192 (257)
.|.|. |||-++ .+.++.|.||+||=
T Consensus 87 ~v~v~~gP~G~f~l~~~~~~~~~vliagG~Git 119 (248)
T 1fdr_A 87 EVQVVSEAAGFFVLDEVPHCETLWMLATGTAIG 119 (248)
T ss_dssp EEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGH
T ss_pred EEEEecCCcceeEcCCCCCCceEEEEEecccHH
Confidence 35566 665332 35689999999983
No 18
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=34.77 E-value=23 Score=29.59 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=16.6
Q ss_pred eEEEeceeccc--------cccEEEEecccee
Q 025155 168 HISVQGAYLTY--------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~--------eDtyLAVTGGTGi 191 (257)
.|.|.|||=++ .+.++.|.||+||
T Consensus 141 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGI 172 (311)
T 3lo8_A 141 KIQLTGPSGKIMLLPEEDPNATHIMIATGTGV 172 (311)
T ss_dssp EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGG
T ss_pred EEEEEeccCCcccCCCcCCCCCEEEEECCEEH
Confidence 45666666322 3458999999997
No 19
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=34.39 E-value=24 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.9
Q ss_pred eEEEe-ceeccc-------cccEEEEecccee
Q 025155 168 HISVQ-GAYLTY-------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvq-Gpylt~-------eDtyLAVTGGTGi 191 (257)
.|.|. |||=.+ .+.++-|.||+||
T Consensus 103 ~v~v~~gP~G~~~~~~~~~~~~~vliagG~Gi 134 (271)
T 4fk8_A 103 PVLIGKKPTGTLVADNLLPGKTLWMLSTGTGL 134 (271)
T ss_dssp EEEEESCCBCSCCGGGBCCCSEEEEEECGGGG
T ss_pred EEEEecCCCcceecCCcCCCCeEEEEECCEEH
Confidence 45566 665432 3568999999998
No 20
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=34.32 E-value=20 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=18.1
Q ss_pred eEEEeceeccc-----cccEEEEeccceee
Q 025155 168 HISVQGAYLTY-----EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~-----eDtyLAVTGGTGiF 192 (257)
.|.|.|||-.+ .+.++.|.||+||=
T Consensus 95 ~v~v~gP~g~f~l~~~~~~~vliagG~GIt 124 (321)
T 2pia_A 95 AVEVSLPRNEFPLDKRAKSFILVAGGIGIT 124 (321)
T ss_dssp EEEECCCBCCSCCCTTCSEEEEEEEGGGHH
T ss_pred EEEEeCCccccccCCCCCCEEEEEecccHh
Confidence 46677776433 35699999999983
No 21
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=33.08 E-value=25 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=16.9
Q ss_pred eEEEeceeccc-------cccEEEEecccee
Q 025155 168 HISVQGAYLTY-------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~-------eDtyLAVTGGTGi 191 (257)
.|.|.|||=++ .+.++-|.|||||
T Consensus 144 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 174 (314)
T 1fnb_A 144 EVKLTGPVGKEMLMPKDPNATIIMLGTGTGI 174 (314)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred EEEEEeccCCceeCCCCCCCCEEEEeCCccH
Confidence 46666776432 2458999999998
No 22
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=32.92 E-value=24 Score=29.80 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=18.5
Q ss_pred eEEEeceeccc-----cccEEEEeccceee
Q 025155 168 HISVQGAYLTY-----EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~-----eDtyLAVTGGTGiF 192 (257)
.|.|.|||=++ .+.++-|.||+||=
T Consensus 194 ~v~v~gP~G~f~~~~~~~~~vliagGtGia 223 (338)
T 1krh_A 194 KMSFTGPFGSFYLRDVKRPVLMLAGGTGIA 223 (338)
T ss_dssp EEEEEEEECSCSCCCCSSCEEEEEEGGGHH
T ss_pred EEEEECCccceEeCCCCceEEEEEccccHh
Confidence 56777777443 25699999999983
No 23
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=32.66 E-value=25 Score=29.94 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=17.4
Q ss_pred eEEEeceeccc---------cccEEEEecccee
Q 025155 168 HISVQGAYLTY---------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~---------eDtyLAVTGGTGi 191 (257)
.|.|.|||=++ .+..+-|.|||||
T Consensus 150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGI 182 (316)
T 3jqq_A 150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGI 182 (316)
T ss_dssp EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGG
T ss_pred EEEEEecCCceEcCCcccCCCCcEEEEeCCcee
Confidence 46677776533 2358999999997
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=32.48 E-value=26 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.5
Q ss_pred eEEEeceeccc--------cccEEEEeccceee
Q 025155 168 HISVQGAYLTY--------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~--------eDtyLAVTGGTGiF 192 (257)
.|.|.|||-.+ .+.++-|.|||||=
T Consensus 146 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIa 178 (314)
T 2rc5_A 146 EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIA 178 (314)
T ss_dssp EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGH
T ss_pred EEEEEeccCCceeCCCCCCCCCEEEEECCccHH
Confidence 46677776432 24599999999983
No 25
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=29.15 E-value=32 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=17.1
Q ss_pred eEEEeceeccc-------cccEEEEecccee
Q 025155 168 HISVQGAYLTY-------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~-------eDtyLAVTGGTGi 191 (257)
.|.|.|||=.+ .+.++-|.|||||
T Consensus 140 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI 170 (310)
T 3vo2_A 140 DVKITGPVGKEMLMPKDPNATVIMLATGTGI 170 (310)
T ss_dssp EEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEeCCcch
Confidence 46677776432 2468999999997
No 26
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=27.54 E-value=34 Score=28.03 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=16.7
Q ss_pred eEEEeceeccc-----cccEEEEeccceee
Q 025155 168 HISVQGAYLTY-----EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~-----eDtyLAVTGGTGiF 192 (257)
.|.|.||.=.+ .+.+|.|-||+||=
T Consensus 96 ~l~v~gP~G~f~l~~~~~~~lliagGtGit 125 (252)
T 2gpj_A 96 LIQIGGPGLKKLINFEADWFLLAGDMTALP 125 (252)
T ss_dssp EEEEEEEECCCCCCSSSSEEEEEEEGGGHH
T ss_pred EEEEecCCCCCcCCCCCceEEEEcchhhHH
Confidence 35556665332 24599999999984
No 27
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=25.46 E-value=38 Score=29.45 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.6
Q ss_pred ccEEEEecccee
Q 025155 180 DTYLAVTGGSGI 191 (257)
Q Consensus 180 DtyLAVTGGTGi 191 (257)
+.++-|.||+||
T Consensus 273 ~~~vlIagG~Gi 284 (399)
T 4g1v_A 273 VPLVLLSSGVGV 284 (399)
T ss_dssp SCEEEEEEGGGH
T ss_pred CCEEEEecceeH
Confidence 468999999997
No 28
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=22.41 E-value=44 Score=28.92 Aligned_cols=24 Identities=17% Similarity=0.614 Sum_probs=16.2
Q ss_pred eEEEeceeccc------cccEEEEecccee
Q 025155 168 HISVQGAYLTY------EDTYLAVTGGSGI 191 (257)
Q Consensus 168 hISvqGpylt~------eDtyLAVTGGTGi 191 (257)
.|.|.||+=++ .+.++-|.||+||
T Consensus 249 ~v~v~gP~G~f~l~~~~~~~~vlIagGtGi 278 (403)
T 1cqx_A 249 QVKLAAPYGSFHIDVDAKTPIVLISGGVGL 278 (403)
T ss_dssp EEEECCCBCSCSCCTTCCSCEEEEESSCCH
T ss_pred EEEEecCccCcccCCCCCCCEEEEEecccH
Confidence 45555655322 3459999999998
No 29
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=20.70 E-value=51 Score=29.26 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=18.3
Q ss_pred eEEEeceeccc-------cccEEEEeccceee
Q 025155 168 HISVQGAYLTY-------EDTYLAVTGGSGIF 192 (257)
Q Consensus 168 hISvqGpylt~-------eDtyLAVTGGTGiF 192 (257)
.|.|.|||=++ .+..+-|-||+||=
T Consensus 232 ~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIa 263 (402)
T 2b5o_A 232 DVKITGPVGKEMLLPDDEDATVVMLATGTGIA 263 (402)
T ss_dssp CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGH
T ss_pred eEEEEcccCCcccCCccCCCCEEEEEcccCHH
Confidence 67788887432 23589999999983
Done!