BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025156
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 89/109 (81%), Gaps = 4/109 (3%)

Query: 11  ALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAG 69
           AL+GEKEWYFF+PRDRKYPNGSRPNR AGSGYWKATG DK I  + + VGIKKALVFY G
Sbjct: 69  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 128

Query: 70  KAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEK 118
           KAPKG KTNWIMHEYRL +    +R+  S +LDDWVLCRIY K+ S +K
Sbjct: 129 KAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLCRIYKKQSSAQK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 89/109 (81%), Gaps = 4/109 (3%)

Query: 11  ALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAG 69
           AL+GEKEWYFF+PRDRKYPNGSRPNR AGSGYWKATG DK I  + + VGIKKALVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 70  KAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIEK 118
           KAPKG KTNWIMHEYRL +    +R+  S +LDDWVLCRIY K+ S +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIE---PSRRNGSTKLDDWVLCRIYKKQSSAQK 171


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 96/116 (82%), Gaps = 3/116 (2%)

Query: 6   EISDLALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKAL 64
           ++ + AL+G +EWYFFTPRDRKYPNGSRPNRAAG+GYWKATGADKP+  + + +GIKKAL
Sbjct: 59  DLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKAL 118

Query: 65  VFYAGKAPKGEKTNWIMHEYRL--ADVDRSARKKNSLRLDDWVLCRIYNKKGSIEK 118
           VFYAGKAP+G KT+WIMHEYRL  A    +  KK SLRLDDWVLCR+YNKK   EK
Sbjct: 119 VFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,284,188
Number of Sequences: 62578
Number of extensions: 358661
Number of successful extensions: 603
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)