Query 025156
Match_columns 257
No_of_seqs 187 out of 889
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.1E-39 7.3E-44 279.0 10.8 116 2-117 55-173 (174)
2 1ut7_A No apical meristem prot 100.0 2E-38 6.9E-43 272.0 7.8 113 2-117 57-170 (171)
3 2xk0_A Polycomb protein PCL; t 7.1 1.9E+02 0.0066 21.0 1.6 10 157-166 3-12 (69)
4 2it2_A UPF0130 protein PH1069; 5.6 1.6E+02 0.0055 25.2 0.6 16 182-197 44-59 (200)
5 2lpm_A Two-component response 5.0 1.7E+02 0.0058 22.3 0.3 7 251-257 101-107 (123)
6 2h7a_A Hypothetical protein YC 4.8 3E+02 0.01 21.7 1.6 16 104-119 13-28 (110)
7 2dvk_A UPF0130 protein APE0816 4.4 1.7E+02 0.0057 24.9 -0.1 16 182-197 30-45 (188)
8 2xc8_A Gene 22 product; siphov 4.4 3.9E+02 0.013 21.2 2.0 14 100-113 69-82 (146)
9 2qg3_A UPF0130 protein AF_2059 4.1 1.9E+02 0.0064 25.0 -0.1 16 182-197 48-63 (208)
10 2y9w_C Lectin-like fold protei 4.0 7.8E+02 0.027 19.5 3.5 42 39-85 18-59 (150)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.1e-39 Score=278.98 Aligned_cols=116 Identities=72% Similarity=1.296 Sum_probs=93.4
Q ss_pred CCcccccccccCCCceEEEeccCCCCCCCCCCCcccccCccccccCCccccc-CCcceEEEEEEeeeeccCCCCcccCeE
Q 025156 2 IFIREISDLALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAGKAPKGEKTNWI 80 (257)
Q Consensus 2 ~~P~dLPg~al~gekeWYFFSpr~rKy~nG~R~nRatg~GyWK~tG~~k~I~-~gk~VG~KKtLvFY~Gk~p~g~KT~Wv 80 (257)
.+|||||+.+..|+++|||||+|++||++|.|+||+|++||||++|++++|. .+++||+||+|+||.|+++++.||+|+
T Consensus 55 ~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~Wv 134 (174)
T 3ulx_A 55 FDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWI 134 (174)
T ss_dssp SCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEE
T ss_pred CCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeE
Confidence 3799999999999999999999999999999999999999999999999996 468999999999999999999999999
Q ss_pred EeEEEecCcchhh--hhcCCCCCCCeEEEEEEeeCCCCc
Q 025156 81 MHEYRLADVDRSA--RKKNSLRLDDWVLCRIYNKKGSIE 117 (257)
Q Consensus 81 MhEYrL~~~~~s~--~k~~~~~~~dwVLCRIy~Kk~~~e 117 (257)
||||+|.+..... .+.+....++|||||||+|++.-+
T Consensus 135 MhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~~~~ 173 (174)
T 3ulx_A 135 MHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173 (174)
T ss_dssp EEEEEECSCC-----------CCSSEEEEEEEESCC---
T ss_pred EEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCCCcC
Confidence 9999999865432 122335678999999999987644
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2e-38 Score=271.96 Aligned_cols=113 Identities=69% Similarity=1.224 Sum_probs=89.0
Q ss_pred CCcccccccccCCCceEEEeccCCCCCCCCCCCcccccCccccccCCccccc-CCcceEEEEEEeeeeccCCCCcccCeE
Q 025156 2 IFIREISDLALYGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIG-QPKPVGIKKALVFYAGKAPKGEKTNWI 80 (257)
Q Consensus 2 ~~P~dLPg~al~gekeWYFFSpr~rKy~nG~R~nRatg~GyWK~tG~~k~I~-~gk~VG~KKtLvFY~Gk~p~g~KT~Wv 80 (257)
.+|||||+.+..|+++|||||+|++||++|.|+||+|++||||++|++++|. .+.+||+||+|+||.|+++++.||+|+
T Consensus 57 ~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~Wv 136 (171)
T 1ut7_A 57 FDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWI 136 (171)
T ss_dssp SCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEE
T ss_pred CChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeE
Confidence 4899999999999999999999999999999999999999999999999996 568999999999999999999999999
Q ss_pred EeEEEecCcchhhhhcCCCCCCCeEEEEEEeeCCCCc
Q 025156 81 MHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGSIE 117 (257)
Q Consensus 81 MhEYrL~~~~~s~~k~~~~~~~dwVLCRIy~Kk~~~e 117 (257)
||||+|..... ..+....++|||||||+|++..+
T Consensus 137 MhEY~l~~~~~---~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 137 MHEYRLIEPSR---RNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp EEEEEECCCC-----------CCEEEEEEEECC----
T ss_pred EEEEEcCCCcc---ccCcccCCCEEEEEEEEcCCCCC
Confidence 99999998642 11234578999999999987644
No 3
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=7.07 E-value=1.9e+02 Score=21.03 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 025156 157 LLPNPASTVT 166 (257)
Q Consensus 157 ~~~~~~~~~~ 166 (257)
+.|||++++|
T Consensus 3 m~pp~~a~~p 12 (69)
T 2xk0_A 3 MAPPVAAPSP 12 (69)
T ss_dssp SSCSSSSSCC
T ss_pred CCCCCCCCCc
Confidence 4455444433
No 4
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=5.63 E-value=1.6e+02 Score=25.16 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=12.4
Q ss_pred CCcccccCCCCcceec
Q 025156 182 SVPKLNTDSSCSEHVV 197 (257)
Q Consensus 182 s~p~~~~dss~~~~~~ 197 (257)
|.|.+-|.||||-.|.
T Consensus 44 s~~~~~TTSSCSGRIs 59 (200)
T 2it2_A 44 SIENYFTTSSCSGRIS 59 (200)
T ss_dssp HSTTEEECSCBCCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 5677789999997554
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=4.99 E-value=1.7e+02 Score=22.32 Aligned_cols=7 Identities=57% Similarity=0.946 Sum_probs=5.9
Q ss_pred hhhCCCC
Q 025156 251 MYFTKPF 257 (257)
Q Consensus 251 ~y~~kpf 257 (257)
-||.|||
T Consensus 101 ~yl~KP~ 107 (123)
T 2lpm_A 101 PLLTKPF 107 (123)
T ss_dssp SCBCSSS
T ss_pred cEEECCC
Confidence 4899998
No 6
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=4.79 E-value=3e+02 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=12.3
Q ss_pred eEEEEEEeeCCCCccc
Q 025156 104 WVLCRIYNKKGSIEKQ 119 (257)
Q Consensus 104 wVLCRIy~Kk~~~ek~ 119 (257)
..||-||+++++..-+
T Consensus 13 ~mlC~IYkS~KK~~~Y 28 (110)
T 2h7a_A 13 SMFCVIYRSSKRDQTY 28 (110)
T ss_dssp CCCEEEEEETTSSSCE
T ss_pred eEEEEEEecCCCCceE
Confidence 3799999988776654
No 7
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=4.41 E-value=1.7e+02 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.6
Q ss_pred CCcccccCCCCcceec
Q 025156 182 SVPKLNTDSSCSEHVV 197 (257)
Q Consensus 182 s~p~~~~dss~~~~~~ 197 (257)
|.|.+-|.||||-.|.
T Consensus 30 s~~~~~TTSSCSGRIs 45 (188)
T 2dvk_A 30 RPSKIVSTSSCTGRIT 45 (188)
T ss_dssp CSTTEEEEEEECCEEE
T ss_pred CCCCcEEccCCCccEE
Confidence 6778889999997544
No 8
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=4.40 E-value=3.9e+02 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=10.7
Q ss_pred CCCCeEEEEEEeeC
Q 025156 100 RLDDWVLCRIYNKK 113 (257)
Q Consensus 100 ~~~dwVLCRIy~Kk 113 (257)
+.-.|.|||.|...
T Consensus 69 kkvswslckayldg 82 (146)
T 2xc8_A 69 KKVSWSLCKAYLDG 82 (146)
T ss_dssp CCEEEEEEEEETTT
T ss_pred eeeeHHHHHHhcCC
Confidence 45679999999654
No 9
>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
Probab=4.06 E-value=1.9e+02 Score=25.02 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=12.5
Q ss_pred CCcccccCCCCcceec
Q 025156 182 SVPKLNTDSSCSEHVV 197 (257)
Q Consensus 182 s~p~~~~dss~~~~~~ 197 (257)
|.|.+-|.||||--|.
T Consensus 48 s~~~~~TTSSCSGRIs 63 (208)
T 2qg3_A 48 SFDDFVTLSSCSGRIA 63 (208)
T ss_dssp TSTTEEEEEEECCEEE
T ss_pred CCCCeEEcCCCcccEE
Confidence 6677789999997554
No 10
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=4.01 E-value=7.8e+02 Score=19.46 Aligned_cols=42 Identities=17% Similarity=0.570 Sum_probs=22.2
Q ss_pred cCccccccCCcccccCCcceEEEEEEeeeeccCCCCcccCeEEeEEE
Q 025156 39 GSGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYR 85 (257)
Q Consensus 39 g~GyWK~tG~~k~I~~gk~VG~KKtLvFY~Gk~p~g~KT~WvMhEYr 85 (257)
.+-.|-...+....... --+|..+.-..|.....+|++|.|-
T Consensus 18 nganwannsatenlatn-----sgtliifdqstpgqdadrwlihnyl 59 (150)
T 2y9w_C 18 NGANWANNSATENLATN-----SGTLIIFDQSTPGQDADRWLIHNYL 59 (150)
T ss_dssp ETTEEEEECCC-----------CCEEEEEESCCCSTTTTCEEEEEET
T ss_pred ccccccccchhhhhhcC-----CceEEEEcCCCCCCcchhhhhhhcc
Confidence 34456655555544311 1244445545566677899999984
Done!