BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025157
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
           WITH COMPOUND 4
 pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
           WITH COMPOUND 4
          Length = 187

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 176 VATSLTNRDKNEVQHQISVL 195
           + TSLT RDKN+V  ++ VL
Sbjct: 18  IITSLTGRDKNQVDGEVQVL 37


>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
           WITH COMPOUND 4
 pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
           WITH COMPOUND 4
          Length = 187

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 176 VATSLTNRDKNEVQHQISVL 195
           + TSLT RDKN+V  ++ VL
Sbjct: 18  IITSLTGRDKNQVDGEVQVL 37


>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           COMPOUND 4
 pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           COMPOUND 4
          Length = 187

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 176 VATSLTNRDKNEVQHQISVL 195
           + TSLT RDKN+V  ++ VL
Sbjct: 18  IITSLTGRDKNQVDGEVQVL 37


>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           BI 201335
 pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           BI 201335
 pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           DES-Bromine Analogue Of Bi 201335
 pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
           DES-Bromine Analogue Of Bi 201335
          Length = 186

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 176 VATSLTNRDKNEVQHQISVL 195
           + TSLT RDKN+V  ++ VL
Sbjct: 17  IITSLTGRDKNQVDGEVQVL 36


>pdb|1DY8|A Chain A, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
           CRYSTAL Structures Of Two Protease-Inhibitor Complexes
           (Inhibitor Ii)
 pdb|1DY8|B Chain B, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
           CRYSTAL Structures Of Two Protease-Inhibitor Complexes
           (Inhibitor Ii)
 pdb|1DY9|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
           Crystal Structures Of Two Protease-inhibitor Complexes
           (inhibitor I)
 pdb|1DY9|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
           Crystal Structures Of Two Protease-inhibitor Complexes
           (inhibitor I)
 pdb|1DXP|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
           Crystal Structures Of Two Protease-inhibitor Complexes
           (apo Structure)
 pdb|1DXP|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
           Crystal Structures Of Two Protease-inhibitor Complexes
           (apo Structure)
 pdb|1W3C|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
           Complex With A Peptidomimetic Inhibitor
 pdb|1W3C|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
           Complex With A Peptidomimetic Inhibitor
 pdb|3OYP|A Chain A, Hcv Ns34A IN COMPLEX WITH LIGAND 3
 pdb|3OYP|B Chain B, Hcv Ns34A IN COMPLEX WITH LIGAND 3
          Length = 187

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 176 VATSLTNRDKNEVQHQISVL 195
           + TSLT RDKN+V  ++ VL
Sbjct: 17  IITSLTGRDKNQVDGEVQVL 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,061,797
Number of Sequences: 62578
Number of extensions: 190417
Number of successful extensions: 550
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 5
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)