BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025157
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana
GN=DTX46 PE=2 SV=1
Length = 559
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/218 (61%), Positives = 161/218 (73%), Gaps = 13/218 (5%)
Query: 51 VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
V PK K RF+ C S++QE + + + S+S + + ++ V
Sbjct: 44 VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102
Query: 99 KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162
Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
D + Y FMFLS+ATSNLVATSL +DK+EVQHQIS+LLF+GLACG +M++ T+ FG AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222
Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
+AFTG KN I+PAANKYVQIRGLAWPAVL GWVAQSA
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSA 260
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5
PE=2 SV=1
Length = 543
Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 132/154 (85%)
Query: 103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
L QSIW Q+KEI+KFTGPA G+WICGPLMSLIDT VIGQGSS+ELAALGPGTVLCD+MS
Sbjct: 90 LVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMS 149
Query: 163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
Y+FMFLS+ATSN+VATSL +DK E QHQISVLLF+GL CG ML+ T+ FG A++AFT
Sbjct: 150 YVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFT 209
Query: 223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
KN+ I+PAANKY+QIRGLAWP +L G VAQSA
Sbjct: 210 RGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSA 243
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2
SV=2
Length = 515
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 130 PLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSIATSNLVATSLTNRDKNE 187
P+ SL+DTA IGQ +ELAA+G L + +S I +F +SI TS + + ++
Sbjct: 51 PIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDT 110
Query: 188 VQHQ 191
V+
Sbjct: 111 VRDH 114
>sp|Q6EI05|GAIPB_CUCMA DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1
Length = 587
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQA-LSAFTGSKNVHILPAANKYVQIRGLA 243
+N + H +S +L + L F F QA L AF G K VH++ + +G+
Sbjct: 276 ENPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVI----DFSMNQGMQ 331
Query: 244 WPAVL 248
WPA+L
Sbjct: 332 WPALL 336
>sp|Q9CD72|UVRD1_MYCLE ATP-dependent DNA helicase UvrD1 OS=Mycobacterium leprae (strain
TN) GN=uvrD PE=3 SV=1
Length = 778
Score = 34.7 bits (78), Expect = 0.62, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 138 AVIGQGSSLEL---AALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISV 194
AV+ +GS L + A G TVL ++Y+ S+ S ++A + TN+ E++ +++
Sbjct: 28 AVVHEGSPLLIVAGAGSGKTTVLARRIAYLIAARSVGVSQILAITFTNKAAAEMRERVAR 87
Query: 195 LLFVGLACGFSMLIFT 210
L VG G SM + T
Sbjct: 88 L--VGDHTGPSMWVST 101
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana
GN=DTX44 PE=2 SV=1
Length = 521
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 25/226 (11%)
Query: 52 FAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKT-------EGLA 104
F+P RF S + ++ D S ++S + EK T +
Sbjct: 10 FSPHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDHKP 69
Query: 105 DQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI 164
D I EIM PA P+ SL+DTA +G S ELAA+G + + +S +
Sbjct: 70 DPGIGKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKL 129
Query: 165 F--MFLSIATSNLVAT-SLTNRDKNE-----------VQHQISVLLFVGLACGFSMLIFT 210
F L++ TS + ++ +D N+ V + + VG+A ++ + +
Sbjct: 130 FNVPLLNVTTSFVAEEQAIAAKDDNDSIETSKKVLPSVSTSLVLAAGVGIAEAIALSLGS 189
Query: 211 KFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256
F + + A + I A +++++R P ++ AQ A
Sbjct: 190 DF--LMDVMAIPFDSPMRI--PAEQFLRLRAYGAPPIVVALAAQGA 231
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana
GN=DTX45 PE=2 SV=2
Length = 560
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 36/170 (21%)
Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF--MFLSI 170
+E++ + PA PL L++TA IG+ S+EL + G + + +S +F LS+
Sbjct: 107 RELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSV 166
Query: 171 ATS-------NLVATSLTNRD-KNEVQHQ------------------ISVLLFVGLACGF 204
ATS + A L + D ++++ Q I + +F LA
Sbjct: 167 ATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPERKQLSSVSTALVLAIGIGIFEALALSL 226
Query: 205 SMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQ 254
+ F + G+Q++S + A +++ +R L PA + Q
Sbjct: 227 ASGPFLRLMGIQSMS--------EMFIPARQFLVLRALGAPAYVVSLALQ 268
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1
Length = 587
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQA-LSAFTGSKNVHILPAANKYVQIRGLA 243
+N++ H +S L + L F F QA L AF G K VH++ + +GL
Sbjct: 280 QNQIDHCLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVI----DFSMNQGLQ 335
Query: 244 WPAVL 248
WPA++
Sbjct: 336 WPALM 340
>sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus genotype 6h (isolate VN004)
PE=1 SV=3
Length = 3015
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 176 VATSLTNRDKNEVQHQISVLLFVG---LACGFSMLIFTKFFGMQALSAFTGSKNVHILPA 232
+ TSLT RDKNEV+ +I V+ LA + +++T ++G + G K P
Sbjct: 1044 IVTSLTGRDKNEVEGEIQVVSTATQSFLATAVNGVLWTVYYGAGS-KTLAGPKG----PV 1098
Query: 233 ANKYVQIRG--LAWPA 246
Y + + WPA
Sbjct: 1099 CQMYTNVDQDLVGWPA 1114
>sp|Q5A895|HSE1_CANAL Class E vacuolar protein-sorting machinery protein HSE1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=HSE1 PE=3
SV=1
Length = 498
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 157 LCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACG--FSMLIFTKFFG 214
+CD +S + T ++ T LT++D N V +S+L+ + CG I TK F
Sbjct: 27 VCDRISADPETETKRTITILKTKLTSKDANVVLRSLSLLISIAENCGSRVKQEIATKSFL 86
Query: 215 MQALSAFTGSKNVH 228
AL K +H
Sbjct: 87 QDALVKRLSDKKLH 100
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3
PE=1 SV=1
Length = 526
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 65/180 (36%), Gaps = 57/180 (31%)
Query: 133 SLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSIATS----------------- 173
SLIDTA +G+ +++LAA+G + + S I +F +S+ TS
Sbjct: 55 SLIDTAFVGRLGAVQLAAVGVSIAIFNQASRITIFPLVSLTTSFVAEEDTMEKMKEEANK 114
Query: 174 -NLV--------------ATSLTNRDKNEVQH-----------------------QISVL 195
NLV +S T+ D N+ Q S
Sbjct: 115 ANLVHAETILVQDSLEKGISSPTSNDTNQPQQPPAPDTKSNSGNKSNKKEKRTIRTASTA 174
Query: 196 LFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255
+ +GL G IF F L N +L A+KY+ IR L PA+L Q
Sbjct: 175 MILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQG 234
>sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3
Length = 979
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 2 QVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRF 61
++K FANHF P + TSCSK + ++ + +HS+ R C+F R
Sbjct: 632 EIKDFANHF---PTYVHCSFCRYNTSCSKAY-VNHMMSFHSNRPSKRFCIFKKHSENLRG 687
Query: 62 IT-TCLS 67
IT CL+
Sbjct: 688 ITLVCLN 694
>sp|B0W730|SMG8_CULQU Protein SMG8 OS=Culex quinquefasciatus GN=CPIJ003128 PE=3 SV=1
Length = 912
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 66 LSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQ--IKEIMKFTG--- 120
LS SQ+ S++ S+ + S+ +++EE K+ + T+G + Q + EI+ G
Sbjct: 587 LSGSQK--SQDSASNLTFSMDEKRDEENKSQKFGTQGEDEDETLEQETVNEIVIKVGEHS 644
Query: 121 --------PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDN 160
P+T ++ G L + ++ Q S L LGP ++ N
Sbjct: 645 EDKAILRQPSTTEYLPGMLHAASPAGLLPQFPSWSLVCLGPSSIYTHN 692
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens
GN=SCN3A PE=1 SV=2
Length = 2000
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 41 HSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEV 98
H SLL R +F+P+ + K I + +++ SEND +D S + E ++ V
Sbjct: 556 HQSLLSIRGSLFSPRRNSKTSIFSFRGRAKDVGSENDFADDEHSTFEDSESRRDSLFV 613
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 41 HSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEV 98
H SLL R +F+P+ + K I + +++ SEND +D S + E ++ V
Sbjct: 556 HQSLLSIRGSLFSPRRNSKTSIFSFRGRAKDVGSENDFADDEHSTFEDSESRRDSLFV 613
>sp|Q6FEY7|NORM_ACIAD Probable multidrug resistance protein NorM OS=Acinetobacter sp.
(strain ADP1) GN=norM PE=3 SV=1
Length = 449
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 132 MSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQ 191
+ LIDT + G S+ +LAA+ G L + +F + IAT+ LVA + R +
Sbjct: 31 LGLIDTIMAGHLSANDLAAIAVGVGLWMPVMLLFSAIMIATTPLVAEAKGARTPEHIPVI 90
Query: 192 ISVLLFVGLACG-FSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAV 247
+ L+V ++ G +MLI M L G + P A ++ G PAV
Sbjct: 91 VRQSLWVAVSLGVIAMLILQL---MPFLLPILGVPE-SLQPKAGLFLHAIGFGMPAV 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,937,017
Number of Sequences: 539616
Number of extensions: 2938938
Number of successful extensions: 10334
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 10316
Number of HSP's gapped (non-prelim): 37
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)