Query 025157
Match_columns 257
No_of_seqs 305 out of 1324
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 99.9 1.8E-21 3.8E-26 187.0 21.7 147 108-256 12-158 (455)
2 PRK00187 multidrug efflux prot 99.9 5.7E-21 1.2E-25 183.4 21.7 149 106-257 3-151 (464)
3 PRK10189 MATE family multidrug 99.9 6.7E-21 1.5E-25 183.8 21.4 151 104-256 18-172 (478)
4 PRK10367 DNA-damage-inducible 99.9 1.6E-20 3.4E-25 179.5 20.9 147 108-256 4-151 (441)
5 COG0534 NorM Na+-driven multid 99.9 2.3E-20 5E-25 179.3 20.6 152 104-257 232-383 (455)
6 PRK00187 multidrug efflux prot 99.8 1.4E-19 3E-24 173.8 21.7 151 106-256 229-382 (464)
7 PRK09575 vmrA multidrug efflux 99.8 1.4E-19 3E-24 173.1 20.4 147 108-256 7-154 (453)
8 PRK10189 MATE family multidrug 99.8 2.6E-19 5.6E-24 172.9 21.6 149 107-257 253-401 (478)
9 PRK09575 vmrA multidrug efflux 99.8 5.1E-19 1.1E-23 169.2 20.6 151 106-257 227-378 (453)
10 PRK01766 multidrug efflux prot 99.8 8.1E-19 1.8E-23 167.1 21.4 149 107-257 233-381 (456)
11 PRK10367 DNA-damage-inducible 99.8 1.5E-18 3.2E-23 166.0 21.2 134 110-245 229-362 (441)
12 PRK01766 multidrug efflux prot 99.8 2.3E-18 5E-23 164.0 21.7 148 107-256 6-153 (456)
13 PF01554 MatE: MatE; InterPro 99.8 1.6E-19 3.6E-24 147.7 3.9 135 121-257 1-135 (162)
14 TIGR00797 matE putative efflux 99.6 2E-14 4.3E-19 130.8 18.6 133 106-240 209-341 (342)
15 TIGR00797 matE putative efflux 99.6 2.3E-14 4.9E-19 130.5 18.8 134 121-256 1-134 (342)
16 TIGR01695 mviN integral membra 99.5 1.2E-12 2.5E-17 125.5 21.5 150 107-256 217-369 (502)
17 TIGR02900 spore_V_B stage V sp 99.3 1.4E-10 3.1E-15 110.5 19.1 143 107-255 219-372 (488)
18 KOG1347 Uncharacterized membra 99.3 2.5E-11 5.5E-16 117.5 13.4 142 109-253 24-166 (473)
19 PRK15099 O-antigen translocase 99.3 4.9E-10 1.1E-14 105.6 21.1 136 106-248 208-345 (416)
20 TIGR02900 spore_V_B stage V sp 99.1 2.7E-09 5.9E-14 101.8 17.9 134 116-255 2-137 (488)
21 KOG1347 Uncharacterized membra 99.0 1.4E-08 3.1E-13 98.4 17.5 145 109-255 243-389 (473)
22 PF03023 MVIN: MviN-like prote 99.0 5.2E-08 1.1E-12 93.8 21.1 148 109-256 194-344 (451)
23 TIGR01695 mviN integral membra 99.0 3.5E-08 7.7E-13 94.6 18.8 137 115-256 2-146 (502)
24 COG2244 RfbX Membrane protein 98.7 6.5E-07 1.4E-11 85.6 17.3 142 108-253 208-350 (480)
25 PRK10459 colanic acid exporter 98.7 1.7E-06 3.6E-11 83.2 18.6 140 108-253 202-343 (492)
26 COG0728 MviN Uncharacterized m 98.6 4.6E-06 1E-10 81.7 20.5 147 110-256 229-378 (518)
27 PRK15099 O-antigen translocase 98.5 5.3E-06 1.1E-10 78.2 15.6 115 120-239 8-124 (416)
28 PF03023 MVIN: MviN-like prote 97.8 0.001 2.2E-08 64.2 16.2 112 143-255 5-119 (451)
29 PF07260 ANKH: Progressive ank 97.4 0.014 3E-07 54.1 17.4 139 109-256 7-151 (345)
30 PF01943 Polysacc_synt: Polysa 97.2 0.0047 1E-07 53.4 10.9 72 108-179 200-272 (273)
31 COG0728 MviN Uncharacterized m 96.6 0.37 7.9E-06 47.7 19.4 142 114-255 8-154 (518)
32 PF13440 Polysacc_synt_3: Poly 96.0 0.087 1.9E-06 45.1 10.7 65 114-178 184-250 (251)
33 PRK10459 colanic acid exporter 96.0 0.17 3.7E-06 48.6 13.6 113 122-250 14-128 (492)
34 PF13440 Polysacc_synt_3: Poly 95.9 0.51 1.1E-05 40.3 15.2 72 132-208 3-76 (251)
35 PF01943 Polysacc_synt: Polysa 95.8 1.1 2.3E-05 38.5 18.4 84 120-205 6-91 (273)
36 COG2244 RfbX Membrane protein 95.0 0.48 1E-05 45.2 12.7 99 112-210 5-106 (480)
37 PF04506 Rft-1: Rft protein; 91.5 2.6 5.7E-05 42.0 11.8 142 112-255 252-406 (549)
38 KOG2864 Nuclear division RFT1 73.9 39 0.00084 33.3 10.5 143 107-255 237-386 (530)
39 PF04505 Dispanin: Interferon- 69.7 29 0.00063 25.6 7.0 45 165-210 33-77 (82)
40 PF12250 AftA_N: Arabinofurano 64.7 36 0.00077 32.9 8.1 98 143-246 223-320 (429)
41 PF04172 LrgB: LrgB-like famil 64.5 1E+02 0.0022 27.1 12.8 94 108-223 66-160 (215)
42 KOG0569 Permease of the major 59.4 62 0.0013 31.9 9.0 13 170-182 322-334 (485)
43 COG0170 SEC59 Dolichol kinase 55.3 26 0.00056 30.6 5.2 24 160-183 117-140 (216)
44 TIGR00930 2a30 K-Cl cotranspor 54.9 19 0.00042 38.4 5.0 101 115-222 81-189 (953)
45 COG1288 Predicted membrane pro 53.0 2E+02 0.0043 28.3 10.9 15 134-148 311-325 (481)
46 TIGR00659 conserved hypothetic 52.9 1.7E+02 0.0036 26.0 12.6 94 108-223 76-170 (226)
47 COG4176 ProW ABC-type proline/ 51.5 77 0.0017 29.1 7.6 77 110-190 200-286 (290)
48 PRK04288 antiholin-like protei 50.5 1.8E+02 0.004 25.8 12.4 94 108-223 82-176 (232)
49 PF03030 H_PPase: Inorganic H+ 48.1 3.4E+02 0.0073 28.1 12.3 68 105-172 556-625 (682)
50 PF03904 DUF334: Domain of unk 45.6 81 0.0018 28.0 6.6 63 183-248 141-212 (230)
51 PF13347 MFS_2: MFS/sugar tran 43.3 1.4E+02 0.0029 28.0 8.4 67 113-185 225-292 (428)
52 PF03601 Cons_hypoth698: Conse 42.2 1.4E+02 0.0031 27.5 8.1 65 112-186 75-143 (305)
53 PRK13823 conjugal transfer pro 40.2 1.7E+02 0.0036 22.4 7.8 34 205-239 47-80 (94)
54 PF02687 FtsX: FtsX-like perme 40.1 1.5E+02 0.0032 21.8 7.7 48 174-221 30-77 (121)
55 COG4536 CorB Putative Mg2+ and 39.8 3.2E+02 0.0069 26.4 9.9 94 120-223 61-155 (423)
56 PRK10711 hypothetical protein; 37.3 3E+02 0.0065 24.5 12.4 93 109-223 78-171 (231)
57 TIGR00698 conserved hypothetic 32.3 3.8E+02 0.0083 25.1 9.3 33 112-144 81-115 (335)
58 PRK10207 dipeptide/tripeptide 30.4 5.1E+02 0.011 25.1 13.7 21 203-223 465-485 (489)
59 PF07260 ANKH: Progressive ank 30.1 1.9E+02 0.0041 27.3 6.8 55 108-162 230-290 (345)
60 TIGR01301 GPH_sucrose GPH fami 29.5 5.4E+02 0.012 25.2 10.3 33 113-145 4-36 (477)
61 PRK10535 macrolide transporter 29.3 5E+02 0.011 26.3 10.4 38 176-213 557-594 (648)
62 PF02592 DUF165: Uncharacteriz 28.3 3.2E+02 0.0069 22.0 9.7 39 166-207 7-45 (145)
63 TIGR01301 GPH_sucrose GPH fami 27.9 5.8E+02 0.013 25.0 10.9 72 111-182 256-334 (477)
64 PRK13629 threonine/serine tran 27.9 4.5E+02 0.0098 25.7 9.3 60 164-223 220-289 (443)
65 TIGR00927 2A1904 K+-dependent 26.9 28 0.0006 37.3 0.8 13 77-89 856-868 (1096)
66 TIGR00704 NaPi_cotrn_rel Na/Pi 26.1 5.3E+02 0.011 23.8 11.7 77 159-240 208-284 (307)
67 PF03609 EII-Sor: PTS system s 25.8 4.7E+02 0.01 23.1 16.0 85 164-252 112-197 (238)
68 PF10337 DUF2422: Protein of u 25.8 6.1E+02 0.013 24.4 14.0 26 105-130 9-34 (459)
69 PRK13275 mtrF tetrahydromethan 25.8 2.6E+02 0.0055 20.1 5.5 38 177-216 24-61 (67)
70 PF09472 MtrF: Tetrahydrometha 24.9 2.2E+02 0.0048 20.2 4.9 34 177-212 24-57 (64)
71 PF03842 Silic_transp: Silicon 24.8 6.7E+02 0.014 24.6 9.8 44 118-161 128-173 (512)
72 PRK15097 cytochrome d terminal 24.8 7.2E+02 0.016 24.9 11.4 33 179-211 42-74 (522)
73 PF14476 Chloroplast_duf: Peta 24.7 5.5E+02 0.012 23.7 8.5 28 112-145 206-233 (313)
74 TIGR00427 membrane protein, Ma 24.6 4.5E+02 0.0098 22.6 9.7 59 172-236 23-81 (201)
75 KOG2082 K+/Cl- cotransporter K 24.6 3.3E+02 0.0071 29.0 7.8 33 111-144 113-145 (1075)
76 PF02990 EMP70: Endomembrane p 23.8 7.1E+02 0.015 24.6 11.8 27 160-186 304-330 (521)
77 KOG2325 Predicted transporter/ 23.4 3.7E+02 0.0081 26.6 7.8 40 129-168 282-321 (488)
78 PRK11111 hypothetical protein; 22.6 5.2E+02 0.011 22.5 9.6 51 181-237 35-85 (214)
79 TIGR00400 mgtE Mg2+ transporte 22.4 7E+02 0.015 24.0 16.7 97 112-212 277-375 (449)
80 PF05145 AmoA: Putative ammoni 21.9 6.3E+02 0.014 23.2 8.8 50 165-214 202-251 (318)
81 COG1987 FliQ Flagellar biosynt 21.9 3.6E+02 0.0078 20.4 8.2 50 185-237 3-52 (89)
82 PF03916 NrfD: Polysulphide re 21.6 4.5E+02 0.0097 23.7 7.7 21 178-198 36-56 (313)
83 KOG0637 Sucrose transporter an 21.6 5.1E+02 0.011 25.8 8.2 73 110-182 276-361 (498)
84 PF01595 DUF21: Domain of unkn 21.3 4.4E+02 0.0096 21.3 13.8 51 173-223 103-153 (183)
85 PRK09584 tppB putative tripept 21.3 7.5E+02 0.016 23.9 14.4 23 201-223 466-488 (500)
86 KOG3097 Predicted membrane pro 21.1 2.2E+02 0.0048 27.2 5.5 62 96-157 12-73 (390)
87 COG3104 PTR2 Dipeptide/tripept 21.1 6.7E+02 0.014 25.0 9.0 72 116-187 73-153 (498)
88 KOG1330 Sugar transporter/spin 21.0 2.7E+02 0.0058 27.7 6.2 71 107-182 232-312 (493)
89 TIGR03434 ADOP Acidobacterial 20.4 9.3E+02 0.02 24.6 11.0 48 174-221 304-351 (803)
90 TIGR00697 conserved hypothetic 20.3 5.6E+02 0.012 22.0 9.7 40 167-209 40-79 (202)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=1.8e-21 Score=187.03 Aligned_cols=147 Identities=24% Similarity=0.298 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~ 187 (257)
.++..|+++++++|++++++.+++++++|++|+||+|++++||+++++++.++.+.+..|++.|+++++||++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+++...++++++++++++++++.+.+.++++.+++. ++|+.+.+.+|+++..++.|+..+++++.+.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 158 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGI 158 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 8889999999999999999999999987763
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=5.7e-21 Score=183.37 Aligned_cols=149 Identities=18% Similarity=0.164 Sum_probs=140.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
.++++.+|+++++++|.+++++++.+.+++|+.++|++|++++||++++.++.++.+.+..|++.|+++++||++|+||+
T Consensus 3 ~~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 3 VPPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
++++++.++++.++++++++..++++ +.++++++|+. |+|+.+.+.+|+++..+++|+..+++++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l 151 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFT 151 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877755 67899999999 99999999999999999999999999887753
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.87 E-value=6.7e-21 Score=183.85 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=141.7
Q ss_pred cccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025157 104 ADQSIWNQ--IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLT 181 (257)
Q Consensus 104 ~~~~~~~~--~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lG 181 (257)
.++..|+. .|+++++++|++++++++.+++++|+.++|++|++++||++++.++.++.+.+..|+++|+++++||++|
T Consensus 18 ~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~G 97 (478)
T PRK10189 18 AKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG 97 (478)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444554 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 182 NRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 182 agd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~--~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+||+|++++..++++.++++++++++++.+.++++++.+|+ . |+|+.+++.+|+++..++.|+..+++++++.
T Consensus 98 a~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 172 (478)
T PRK10189 98 KRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDA--TPEVKALALTYLELTVWSYPAAAITLIGSGA 172 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 5 8999999999999999999999999887764
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=179.52 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=139.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~l-G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
.++..|+++++++|++++++++.+++++|+.++|++ |++++||++++.++.++.+.+.+|++.|+++++||++|+||+|
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356689999999999999999999999999999997 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
++++..++++++++++++++.++...+.++++.+++. |+|+.+.+.+|+++..++.|+..++.++++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~ 151 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGW 151 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888899999999999 9999999999999999999999998887764
No 5
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=2.3e-20 Score=179.31 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=147.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 025157 104 ADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR 183 (257)
Q Consensus 104 ~~~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGag 183 (257)
..+.+++..|+++++|+|.+++++.+.....+.+.+++++|++++||++++.++.++.+++..|+++|+++++||++|||
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~ 311 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAG 311 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 184 d~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
|+|++++..+.++.++++++++++++++++++++.++|+. |+|+.+.+..|+++..+..++.+++.++.|+|
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~l 383 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVL 383 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999988864
No 6
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.85 E-value=1.4e-19 Score=173.77 Aligned_cols=151 Identities=14% Similarity=0.030 Sum_probs=141.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
+.+++..|+++++++|.+++++.+.....+|+.+++++|++++||++++.++..+.+.+..|++.|+++++||++|+||+
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~---ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
|++++..+.++.+++++++++++++++++++++++|+.+.|+ |+.+.+..|+++.++++++..++.++.++
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~ 382 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGA 382 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999999999999999999631133 79999999999999999999999988775
No 7
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.84 E-value=1.4e-19 Score=173.09 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=139.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~l-G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
+++..|+++++++|.+++++.+.+++++|+.++|++ |++++||++++.++.++.+.+..+++.|+++++||++|+||+|
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 456789999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
++++..+++++++++++++++++.+.++++++.+|+. |+++.+.+.+|+++..++.|+..+++++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~ 154 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFL 154 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999999888876653
No 8
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=2.6e-19 Score=172.86 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=143.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
.+++.+|+++++|+|..++++...+..++.+.+++++|++++||++++.++..+.+++..|++.|+++++||++|+||++
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
++++..+.++.++++++++++++++++++++.++|++ |+|+.+.+..|+++.++..|+.+++++..|++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQ--DPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999998 99999999999999999999999999988764
No 9
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.83 E-value=5.1e-19 Score=169.21 Aligned_cols=151 Identities=10% Similarity=0.110 Sum_probs=141.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRD 184 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~-~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd 184 (257)
+.+++..|+++++|+|..+++..+.+...+.+.+++++|+ +++||++++.++.++.+.+..|++.|+++++||++|+||
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence 3567889999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 185 ~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
+|++++..+.++.++++.+++++++++.++++++++|+.+ |+|+.+.+..|+++..+++|+.+++++..++|
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~-~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~ 378 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSG-DSELIAETIVGIRLHLFAMFLDGFLVLASAYF 378 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999842 78999999999999999999999998877653
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.83 E-value=8.1e-19 Score=167.12 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=143.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
.+++..|+++++++|.+++++.+.+...+++.+++++|++++||++++.++.++.+.+..|++.|+++++||++|+||++
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
++++..+.++.++++++++++++++.+++++.++|+. |+++.+.+..|+++..+..++.+++.+++|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l 381 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGAL 381 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999999999999999998 99999999999999999999999999988764
No 11
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.82 E-value=1.5e-18 Score=165.96 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHH
Q 025157 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (257)
Q Consensus 110 ~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~ 189 (257)
+..|+++++|+|..++++.+.....+.+.+++++|++++||++++.++.++.+++..|+++|+++++||++|+||+|+++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~ 308 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL 308 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHH
Q 025157 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWP 245 (257)
Q Consensus 190 ~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p 245 (257)
+..+.++.+++++++++++++++++++++++|++ |+|+.+.+..|+++.++..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~--d~~v~~~~~~~l~i~~~~~~ 362 (441)
T PRK10367 309 DVWRAACRQSGIVALLFSLVYALAGEHIIALLTS--LPQIQQLADRYLIWQVILPL 362 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999887644
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.81 E-value=2.3e-18 Score=164.03 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=140.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
..++.+|+++++++|.+++++...+.+++|+.++|++|++++||++++.++..+.+.+..|++.|+++++||++|+||++
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
++++..++++.++++++++++++++.++++++.+++. |+++.+.+.+|+++..++.|+..+..++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~ 153 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSF 153 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999989999999999998 9999999999999999999999988887664
No 13
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=1.6e-19 Score=147.67 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 025157 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (257)
Q Consensus 121 P~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lal 200 (257)
|.+++++++.+...+|+.+++++|++++||++++.++.++...+..|++.|+++++||++|+||++++++..+.++.+++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 201 ii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
+++++++++.+++.++++++|+. |+|+.+.+.+|+++..++.|+..+..+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGIL 135 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999887653
No 14
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.63 E-value=2e-14 Score=130.80 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=126.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
+.+++..|+++++++|.+++++...+...+|+.+++++|++++++++++.++.++...+..+++.+..+.+++++|+||+
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDP 288 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHH
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR 240 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~ 240 (257)
+++++..++++.+.+++++++++++++++++++++|+. |+++.+++..|+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 999999999999764
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.63 E-value=2.3e-14 Score=130.47 Aligned_cols=134 Identities=29% Similarity=0.367 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 025157 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (257)
Q Consensus 121 P~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lal 200 (257)
|.++++++..++..+|+.+++++|++++++++++.++.++...+..|+++|..+.++|++|++|+|++++..+.++.+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 201 ii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+++++++++++++++++..+++. |++..+.+..|+++..++.++..++.+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 134 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGF 134 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 8899999999999999999999988876653
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.53 E-value=1.2e-12 Score=125.47 Aligned_cols=150 Identities=13% Similarity=-0.038 Sum_probs=134.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~-i~~gls~a~s~lVsq~lGagd~ 185 (257)
.+++..|+++++++|..++++.+.+...+|+.+.+.+|+.++++++.+.++.++... +..+++.+..|.+||++|+||+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 356778999999999999999999999999998667999999999999999988765 5778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~--d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+++++..++++.+..++++++++.+++++++++.++.+.+ |+|....+..++++.+++.++..++.++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 369 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRA 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999986521 4577888999999999999999988887654
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.32 E-value=1.4e-10 Score=110.52 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=121.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---C---hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-G---S---SLELAALG----PGTVLCDNMSYIFMFLSIATSNL 175 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-l---G---~~aLAA~g----ia~~i~~l~~~i~~gls~a~s~l 175 (257)
.+++.+|+++++++|.+++++.+.+...+|+.++|+ + | .++.+.+| ++.++..+...+..+++.+..|.
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPD 298 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999987 3 2 22334433 44567777777788999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 176 VATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 176 Vsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
++|++|+||++++++..++.+.++.++++++++.+..++++++.++.. +++ +..|+++.+++.++..++.+..+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999889999999999876 543 57889999999999888777654
No 18
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.31 E-value=2.5e-11 Score=117.50 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDN-MSYIFMFLSIATSNLVATSLTNRDKNE 187 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l-~~~i~~gls~a~s~lVsq~lGagd~~~ 187 (257)
+.+.|++++++.|+++..+.+....++++.++||+|+.++|+.++++...+. .+.+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 6788999999999999999999999999999999999999999999999886 688899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA 253 (257)
Q Consensus 188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~ 253 (257)
...+.+++..+....+++...+ |.+.++|+..+++ |+++...+..|.+......+.......+
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l 166 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPL 166 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHH
Confidence 9999999999999988888776 5678999999999 9999999999999998888877766554
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.29 E-value=4.9e-10 Score=105.62 Aligned_cols=136 Identities=13% Similarity=-0.003 Sum_probs=115.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccC
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCD-NMSYIFMFLSIATSNLVATSLTNR 183 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig-~lG~~aLAA~gia~~i~~-l~~~i~~gls~a~s~lVsq~lGag 183 (257)
+.+++..|+++++|+|.+++++...+...+|+.+++ ++|++++++++++.++.. +...+..+++++..|.++|+ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 456888999999999999999999999999999997 699999999999999977 45889999999999999995 7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 025157 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVL 248 (257)
Q Consensus 184 d~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~ 248 (257)
|+++.++..+..+.+...+++++++++++++++++.++.+ |+ - +.+.+++++.+++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g--~~-~-~~~~~~~~~l~~~~~l~~ 345 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFS--NK-F-TAMRDLFAWQLVGDVLKV 345 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--HH-H-HHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998888888999999999987 33 1 113445555555444433
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.14 E-value=2.7e-09 Score=101.76 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHHHHHH
Q 025157 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (257)
Q Consensus 116 l~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~~~~~ 193 (257)
+|-+.|.+++++...+.+++|+.++++ +|+++.++++.+.++..+...+. .|++.+.+..++|..|++|++++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 356789999999999999999999999 79999999999999988887765 5899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 194 ~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
+++++.++++++++++++++.+.+..++.. |++.. .|+++..+..|+..+..+.++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~~----~~l~~~~~~~~~~~~~~~~~~ 137 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERSL----YSLLVICPAMPFIALSSVLKG 137 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888899998887766 55542 467777778887776665544
No 21
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.02 E-value=1.4e-08 Score=98.42 Aligned_cols=145 Identities=14% Similarity=0.001 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG--~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
.+.++.++++++|.+++-.++-....+.....|.++ ..++++.+++.++....+++..|++.|+++.|+..+|+|+.+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 556789999999999999998888888899999987 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
++|.....++.+++++++..+..++.+++.+..+|+. |+|+.+...+...+.+....+...+.++.|
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~--~~ev~~~va~~~pll~~~~~~~~~q~v~~G 389 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTN--SKEVLDLVADLTPLLALSILLNALQAVLSG 389 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 9999999999999999999999999999999999998 999999999999999999999888888776
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.02 E-value=5.2e-08 Score=93.78 Aligned_cols=148 Identities=14% Similarity=0.004 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHH
Q 025157 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNE 187 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~ 187 (257)
.+..|++++...|.++......+..++|..+.+.+++.++++...+.++..+...+ ...+++..-|..++..-+||.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999999999999999999999999999998755 56899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~--~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
.++..++++...+.+.++.++.++.+++++++++- +.-|.|-.+....+++++++++|+..++.++.-+
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~ 344 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRV 344 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999773 2226677788999999999999999998877644
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.99 E-value=3.5e-08 Score=94.57 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCH-HHHH
Q 025157 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDK-NEVQ 189 (257)
Q Consensus 115 il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aL-AA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~-~~a~ 189 (257)
++|-+.=.++.++...+.+++|..++++ +|++++ ++++++.++.+++..+.. |++.+ ++.+..|+++. |+++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~~~~~~ 78 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKKEKEAR 78 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHH
Confidence 3455566778889999999999999999 899999 799999999887776654 45555 45555555544 5888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhc--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 190 HQISVLLFVGLACGF-SMLIFTKFFGMQALSAF--TGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 190 ~~~~~~l~lalii~l-l~~lll~~~~~~Il~lf--~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+...+++....+++. ++.++.+++++++..++ +. |++..+.+..|+++..++.|+..+..+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 146 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGF--ADETRSLAVSLTRIMFPYLLLISLAAVFGGI 146 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878777776665544 45677778899999988 44 7788899999999999999999998887764
No 24
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.73 E-value=6.5e-07 Score=85.57 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
.++..|++++.++|..+..+...+.+.+|+.++|. +|+++++-++.+.++......+...++...-|.+++.+.++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 36789999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA 253 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~ 253 (257)
+.++..++.+.+...++++..+.+..++++++.++-+ ++.. .+...+.+.+++.++..+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg--~~~~--~~~~~l~il~~~~~~~~~~~~~ 350 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFG--EKYA--SAAPILQLLALAGLFLSLVSLT 350 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecC--Cccc--chhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766 2221 1666667777666666555443
No 25
>PRK10459 colanic acid exporter; Provisional
Probab=98.68 E-value=1.7e-06 Score=83.20 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=114.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFM-FLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~-gls~a~s~lVsq~lGagd~ 185 (257)
+++..|++++.++|....++...+...+|..++|. +|+++++.++.+.++.++...... .++...-|..++. ++|.
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 46778999999999999999999999999999999 899999999999999887554433 4566677888875 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVA 253 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~ 253 (257)
++.++...+.+.+...+++++.+.+.+++++++.++-+ ++ ...+...+++.++...+..+....
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g--~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFG--EK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC--hh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888899999887765 32 245668888888777766555443
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.64 E-value=4.6e-06 Score=81.66 Aligned_cols=147 Identities=14% Similarity=-0.046 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCHHHH
Q 025157 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRDKNEV 188 (257)
Q Consensus 110 ~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~-~i~~gls~a~s~lVsq~lGagd~~~a 188 (257)
...|++++...|..+......+..++|+.+.+.+.+.+++.+..+..+..+.. .+..++++..-|..|++...+|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999998 45678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG--SKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 189 ~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~--~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
++...+++.+.++++++.++.+.++++++++.+-. .-+++-...+.+-+..++++.|++.+.-++.-+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~ 378 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRV 378 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999997732 114555677888899999999999887766543
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=98.47 E-value=5.3e-06 Score=78.25 Aligned_cols=115 Identities=7% Similarity=-0.028 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157 120 GPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLF 197 (257)
Q Consensus 120 iP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~ 197 (257)
.=.....+...+.+++.+.++.+ +|+++.+.++....+..+...+ ..|++.|.+..++|+ ++|++++++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~ 85 (416)
T PRK15099 8 LWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSA 85 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHH
Confidence 33445566666677777778888 8999999999999888877666 778888889999998 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHH
Q 025157 198 VGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQI 239 (257)
Q Consensus 198 lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I 239 (257)
++++.+++++++++.+.+++..++.. +++ ......|+.+
T Consensus 86 l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~ 124 (416)
T PRK15099 86 MVLGFSTLLALVFLLAAAPISQGLFG--HTD-YQGVVRAVAL 124 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--Chh-HHHHHHHHHH
Confidence 99999999999999999999998877 665 3333444443
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.80 E-value=0.001 Score=64.16 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=97.2
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 025157 143 GSSL-ELAALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS 219 (257)
Q Consensus 143 lG~~-aLAA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~ 219 (257)
+|+. +..|+-++.++-++...+.. +++.+..|...+.. +++++++++..+..+.+..+++++++++.++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4543 45688889999888876554 48999999999999 89999999999999999999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 220 lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
++...-|++..+.+.+++++..+..++..+..+..+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a 119 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSA 119 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996544889999999999999999999998887765
No 29
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.45 E-value=0.014 Score=54.05 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS---LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~---~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
...+++++++-+|..++.++..+.--+.|.-+++..+ +.+|++|++..+.-++..+...+-..+..++.+ ++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 3457899999999999999999999999998987443 449999999999999999998888877766544 33
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH-HhHHH-HHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 186 NEVQHQISVLLFV-GLACGFSMLIFTK-FFGMQ-ALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 186 ~~a~~~~~~~l~l-alii~ll~~lll~-~~~~~-Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+ ++.....+.. +.+..++..++.+ .++.. +-.+++. ++++.+.++..+.++.+.-.+.++....+|.
T Consensus 82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV--s~~va~~tr~a~l~L~llPfl~alr~~~qGI 151 (345)
T PF07260_consen 82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV--SPSVAEKTRRAFLYLTLLPFLDALRWIHQGI 151 (345)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2 2222222222 2222222232222 22333 3456787 9999999999999999999999999988874
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.18 E-value=0.0047 Score=53.40 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATS 179 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~ 179 (257)
+++..|++++.++|..+..+...+..-+|..++++ .|+++++-++++.++......+...+.....|.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999999 8999999999999999999999999999999998875
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=96.56 E-value=0.37 Score=47.69 Aligned_cols=142 Identities=8% Similarity=-0.046 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCHHHHH
Q 025157 114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS-LELAALGPGTVLCDNMSYIFM--FLSIATSNLVATSLTNRDKNEVQ 189 (257)
Q Consensus 114 ~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~-~aLAA~gia~~i~~l~~~i~~--gls~a~s~lVsq~lGagd~~~a~ 189 (257)
.++|-++=.....++.-+.+++--.+++. +|+ ....|+.++.++=++.--++- .++++-.|.-.+...++..++++
T Consensus 8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~ 87 (518)
T COG0728 8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR 87 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence 34444444444444444555554444554 887 455799999999998877664 37899999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 190 ~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~-d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
+.......+...+.++++++..++.++++++...+- |++....+....+|..+..++..+..+..+
T Consensus 88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~a 154 (518)
T COG0728 88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGA 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766677777888888889999995554421 233333677888998888888877766554
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.01 E-value=0.087 Score=45.15 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025157 114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVAT 178 (257)
Q Consensus 114 ~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~-~i~~gls~a~s~lVsq 178 (257)
+.++.++|..+.++...+..-+|..+++. +|.++++.++++.++..... .+..+++....|.++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999 99999999999999999888 8888999988888876
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=95.97 E-value=0.17 Score=48.60 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 025157 122 ATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVG 199 (257)
Q Consensus 122 ~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~la 199 (257)
..+.++...+..++...++++ +|+++...++.+..+..+...+. .|++.+. .|. +| +.++.....+++.
T Consensus 14 ~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~--~~~~~~~~~~~~~ 84 (492)
T PRK10459 14 TAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QD--ISHLQLSTLYWLN 84 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---cc--CCHHHHHHHHHHH
Confidence 456666777777777888888 89999999999988888766543 4566544 221 11 1123345556667
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 025157 200 LACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG 250 (257)
Q Consensus 200 lii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~ 250 (257)
++.++++.++.+.+.+.+..+++. ++. ..++.+.++..++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~~ 128 (492)
T PRK10459 85 VGLGIVVFVLVFLLSPLIADFYHN---PEL----APLIKTLSLAFVIIPIG 128 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---hhh----HHHHHHHHHHHHHHHHh
Confidence 777777777777777777777664 332 23445555444444433
No 34
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.94 E-value=0.51 Score=40.33 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLI 208 (257)
Q Consensus 132 ~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~l 208 (257)
.+++...+++| +|.++.+.++....+..+...+ ..|+..+.. + ..++++++.++.....+...+++++++.+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888 8999999999999888877765 344444332 3 34467777777777777665555554443
No 35
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=95.82 E-value=1.1 Score=38.54 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157 120 GPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQISVLLF 197 (257)
Q Consensus 120 iP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~ 197 (257)
.=..+.++...+.+++...++.+ +|+++.+-+++...+..+...+ ..|++.+..-.+++...+ .++.+......+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~ 83 (273)
T PF01943_consen 6 LWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLF 83 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHH
Confidence 33456667777777888888888 8999999999999998877765 677888887777766544 3444555555544
Q ss_pred HHHHHHHH
Q 025157 198 VGLACGFS 205 (257)
Q Consensus 198 lalii~ll 205 (257)
..++.+++
T Consensus 84 ~~~~~~~i 91 (273)
T PF01943_consen 84 LLLIFSLI 91 (273)
T ss_pred HHHHHHHH
Confidence 44444333
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=94.95 E-value=0.48 Score=45.21 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCHHHHH
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ 189 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~-~gls~a~s~lVsq~lGagd~~~a~ 189 (257)
.+++.|-+.=..+.++...+..++....+++ +|+++.+.++.+..+..+...+. .|+..+.+-.+++....+++...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3556666666677777777788888888888 89999999999999998888877 789999998899888887777777
Q ss_pred HH-HHHHHHHHHHHHHHHHHHH
Q 025157 190 HQ-ISVLLFVGLACGFSMLIFT 210 (257)
Q Consensus 190 ~~-~~~~l~lalii~ll~~lll 210 (257)
.. ....+.+.++.+++...+.
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~ 106 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIA 106 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 76 6666666555555544443
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=91.54 E-value=2.6 Score=42.03 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCH--
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ---GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDK-- 185 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~---lG~~aLAA~gia~~i~~l~~~i-~~gls~a~s~lVsq~lGagd~-- 185 (257)
.++++++......+.+.-.+.+--|.+++.. ...++.+.+++++++-+++-=+ +.=+=-+.-.+-++.+..++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788899999999999998888889888887 4567788999999887766433 333556666677777655432
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 186 -------NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 186 -------~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
+++.+.....+.+...+|+++.++.....+.++.++.+ +.-.-..+..-++..++-+|++++|-+..+
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g--~~w~~~~~~~~l~~yc~yi~~la~NGi~Ea 406 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGG--SRWSSTSAPSLLRAYCYYIPFLAINGITEA 406 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhh--hcccCCCchHHHHHHHHHHHHHHHccHHHH
Confidence 45777888889999999998888888889999999876 222223346777888888999988876543
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.86 E-value=39 Score=33.31 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcc
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ---GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTN 182 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~---lG~~aLAA~gia~~i~~l~~-~i~~gls~a~s~lVsq~lGa 182 (257)
.+++..|...+...-..+-+++ +--|.+++.- .+-.+.+.+.+++++-.++. .++.-+=-..-+.-+|.+-.
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlL----TeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~ 312 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLL----TEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSR 312 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh----hcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhc
Confidence 3444444444444444444443 3334444431 23233444555544433332 22233455555666777666
Q ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025157 183 RDKNEVQ---HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255 (257)
Q Consensus 183 gd~~~a~---~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~g 255 (257)
++.|+.+ .+....+.+...+|+++.++....+..++.+++++ .-.-..+...+++.++.+|+.++|-+..+
T Consensus 313 ~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~--kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 313 DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGS--KWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCc--cccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 6555544 56677778888888888777777888899999873 22223345778888899999988876654
No 39
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=69.68 E-value=29 Score=25.60 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFT 210 (257)
Q Consensus 165 ~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll 210 (257)
+..++.--+..+-..+-+||++++++..+.+..++.+ +++++++.
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~i-a~~~g~~~ 77 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSII-AIIIGIVI 77 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHH-HHHHHHHH
Confidence 3345555566788888999999999999988887754 44444443
No 40
>PF12250 AftA_N: Arabinofuranosyltransferase N terminal; InterPro: IPR020963 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the N-terminal domain of AftA, which is predicted to contain 11 transmembrane helices.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=64.70 E-value=36 Score=32.85 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=61.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Q 025157 143 GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222 (257)
Q Consensus 143 lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~ 222 (257)
-|-.++.+.++-.-+....+....|+..-+..+++-......++. .+-..+...++.+ ++.+++ ....++++..+.
T Consensus 223 ~~w~avvg~gvfLG~sA~~YTLytg~~Altvvlma~~~a~~~~~~-~~pl~RL~vigv~-S~~IAl--i~W~PYLla~l~ 298 (429)
T PF12250_consen 223 AGWAAVVGTGVFLGLSATFYTLYTGYAALTVVLMALVAAVAVRRS-WRPLLRLAVIGVI-SIAIAL--IVWGPYLLAALR 298 (429)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHH-HHHHHH--HHHHHHHHHHhc
Confidence 356778888888888888888888888777777776665542222 3333444444433 333343 345788888888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHH
Q 025157 223 GSKNVHILPAANKYVQIRGLAWPA 246 (257)
Q Consensus 223 ~~~d~ev~~~a~~YL~I~~~~~p~ 246 (257)
+ ++.--..|++|+.--.--+|+
T Consensus 299 ~--~~~~~gtA~HYLP~~Ga~lp~ 320 (429)
T PF12250_consen 299 G--PPASTGTAQHYLPEDGAELPL 320 (429)
T ss_pred C--CCCCCCcccccCCccCCcCcc
Confidence 7 455456677887544433333
No 41
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=64.50 E-value=1e+02 Score=27.13 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
-.+..+.+.+...|++...+...+..++...++++ +|-+.--..++. .-.+......-+++.+|... .
T Consensus 66 LY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~----------pkSVTtpiAi~is~~iGG~~-s 134 (215)
T PF04172_consen 66 LYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA----------PKSVTTPIAIEISEQIGGIP-S 134 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH----------HHHhhHHHHHHHHHHhCChH-H
Confidence 34566778888899999999999999998888888 554332222222 22344555556777787532 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~ 223 (257)
++.++.++.+++...++++++++++-
T Consensus 135 -----------Lta~~VvitGi~Ga~~g~~llk~~~I 160 (215)
T PF04172_consen 135 -----------LTAVFVVITGILGAVLGPPLLKLLRI 160 (215)
T ss_pred -----------HHHHHHHHHhhHHHHhHHHHHhHccc
Confidence 12233334444555567888888865
No 42
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=59.40 E-value=62 Score=31.92 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHcc
Q 025157 170 IATSNLVATSLTN 182 (257)
Q Consensus 170 ~a~s~lVsq~lGa 182 (257)
.=+.+.+=..+|+
T Consensus 322 t~~~~~lid~~gR 334 (485)
T KOG0569|consen 322 TLVSPFLIDRLGR 334 (485)
T ss_pred HHHHHHHHHhcCC
Confidence 3344455556664
No 43
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=55.33 E-value=26 Score=30.65 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Q 025157 160 NMSYIFMFLSIATSNLVATSLTNR 183 (257)
Q Consensus 160 l~~~i~~gls~a~s~lVsq~lGag 183 (257)
.+....+++|-+.+++||+.+|+.
T Consensus 117 ~~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 117 IAGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHHHhhHHHHHhCcccCcc
Confidence 344556789999999999999985
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=54.94 E-value=19 Score=38.39 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCHH
Q 025157 115 IMKFTGPATGLWICGPLMSLIDTAVIGQGSSL-ELAALGPGTVLCDNMSYIFMFL-------SIATSNLVATSLTNRDKN 186 (257)
Q Consensus 115 il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~-aLAA~gia~~i~~l~~~i~~gl-------s~a~s~lVsq~lGagd~~ 186 (257)
+..+.+|.+ .+++...+.+-..+++|+.|.. .+.++.++..+..+...-...+ +.|.-.++++++|.
T Consensus 81 ~~GV~~~~~-~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp---- 155 (953)
T TIGR00930 81 VMGVLVPCL-LNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGP---- 155 (953)
T ss_pred eEeeeHhhh-HhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCc----
Confidence 334556653 3444455555666777777632 2333433333332222222222 23344567777773
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~ 222 (257)
+..-.+...++++..+++ +.....|.+.+..+|.
T Consensus 156 ~~Gf~iG~~~~la~~va~--A~~~~Gf~eyl~~lf~ 189 (953)
T TIGR00930 156 EFGGSIGLIFAFANAVAV--AMYVVGFAETVLDLLR 189 (953)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 222222223333333332 3333446677777664
No 45
>COG1288 Predicted membrane protein [Function unknown]
Probab=53.01 E-value=2e+02 Score=28.34 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=7.8
Q ss_pred HHHHHHHhccChHHH
Q 025157 134 LIDTAVIGQGSSLEL 148 (257)
Q Consensus 134 ~vd~~~Ig~lG~~aL 148 (257)
.+...+++.+|++++
T Consensus 311 gIiig~I~glse~~~ 325 (481)
T COG1288 311 GIIIGLIGGLSENDI 325 (481)
T ss_pred HHHHHHHhccchhHH
Confidence 344445556665554
No 46
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=52.87 E-value=1.7e+02 Score=26.01 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
-.+..+.+-+...|+.+..+...+..++....+++ +|-+.--..++. .-.+......-+++.+|. +..
T Consensus 76 LY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~----------pkSvTtpiAm~vs~~iGG-~~s 144 (226)
T TIGR00659 76 LYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLL----------PKSVTTPIAMHVSEMIGG-IPA 144 (226)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhh----------hHHhhHHHHHHHHHHhCC-hHH
Confidence 34556777788889999999999999988888888 554332222322 223444455556777774 322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~ 223 (257)
++.++.++.+++...+.+.++++++-
T Consensus 145 -----------Lta~~vvitGi~Ga~~g~~ll~~~~i 170 (226)
T TIGR00659 145 -----------VTAVFVILTGLLGTVFGPMVLRYFRV 170 (226)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 12233334444455667788888865
No 47
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=51.47 E-value=77 Score=29.05 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 025157 110 NQIKEIMKFTGPATGLWICGPLMS----LIDTAVIGQ--GSSLELAALGPGTVLCDNMSYIFMFLSIATSN----LVATS 179 (257)
Q Consensus 110 ~~~k~il~lgiP~~l~~l~~~l~~----~vd~~~Ig~--lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~----lVsq~ 179 (257)
..+|--+-++.|.++..+-++++. .+...|+|. +|.+.+.|.+-. ++...+-.|++.-.-+ .+.|.
T Consensus 200 ~L~kVqLPlA~PtIMaGiNQtIMlALsMVVIAsMIGa~GLG~~Vl~~i~~l----dig~g~~aGlaIVilAIiLDRitq~ 275 (290)
T COG4176 200 KLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGIQRL----DIGLGFEAGLAIVILAIILDRLTQA 275 (290)
T ss_pred HHHHhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh----hhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555667888877655555444 455556665 677766665532 2222333333333322 46899
Q ss_pred HccCCHHHHHH
Q 025157 180 LTNRDKNEVQH 190 (257)
Q Consensus 180 lGagd~~~a~~ 190 (257)
+|.++..+.++
T Consensus 276 ~~~~~~~~~~~ 286 (290)
T COG4176 276 FGRKAKSRHRR 286 (290)
T ss_pred hcccccccccc
Confidence 99876665544
No 48
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=50.51 E-value=1.8e+02 Score=25.84 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
-.+..+.+-+...|+.+..+...+..++....+++ +|-+.--..++. .-.+......-+++.+|. +..
T Consensus 82 LY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~----------pKSVTtPIAm~is~~iGG-~ps 150 (232)
T PRK04288 82 LYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASML----------PQAATTAIALPVSAGIGG-IKE 150 (232)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh----------hHhhhHHHHHHHHHHhCC-cHH
Confidence 34556777788899999999999999999999988 664432222222 223444455556777774 322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 187 ~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~ 223 (257)
++.++.++.+++...+++++++++.-
T Consensus 151 -----------LtA~~ViitGi~Gai~g~~llk~~~I 176 (232)
T PRK04288 151 -----------ITSFAVIFNAVIIYALGAKFLKLFRI 176 (232)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22333344455556678888888876
No 49
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=48.06 E-value=3.4e+02 Score=28.15 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 105 DQSIWNQIKEIMKFTGPATGLWICGP-LMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIAT 172 (257)
Q Consensus 105 ~~~~~~~~k~il~lgiP~~l~~l~~~-l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~ 172 (257)
+...++.+.+...+.--..+-+.+.+ +..++.-.++|- +|.++++++=++..+..+...+++.-+.|+
T Consensus 556 eg~~~pdy~~cV~I~T~~alkemi~P~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGA 625 (682)
T PF03030_consen 556 EGKAKPDYARCVDISTRAALKEMILPGLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGA 625 (682)
T ss_dssp TTSS---HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 33345556777777766666555444 344455566676 899999999988888888887777655544
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=45.62 E-value=81 Score=28.00 Aligned_cols=63 Identities=8% Similarity=-0.027 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCh---------hHHHHHHHHHHHHHHHHHHHH
Q 025157 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---------HILPAANKYVQIRGLAWPAVL 248 (257)
Q Consensus 183 gd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~---------ev~~~a~~YL~I~~~~~p~~~ 248 (257)
.+++.....+..++...+.+-++++++ ..++.++..+|+. |- ..-+-...|++++++++|...
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lv-mt~g~d~m~fl~v--~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALV-MTIGSDFMDFLHV--DHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhcccchhhhhH--HHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 466677777777776555554444444 3455666677764 11 112235578888888888765
No 51
>PF13347 MFS_2: MFS/sugar transport protein
Probab=43.28 E-value=1.4e+02 Score=27.96 Aligned_cols=67 Identities=6% Similarity=-0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 113 k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
|.+..+-+=..+..+...+.+....++... +|.+... +. ......+...++.-....+++.+|+++-
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~--~~----~~~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLI--SI----FMLIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhh--HH----HHHHHHHHHHHHHHHHHHHHHHccceee
Confidence 445555555666666666666666666555 5555321 11 1123333344555555788888887663
No 52
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=42.25 E-value=1.4e+02 Score=27.45 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cCh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCHH
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIG-Q-GSS-LELAALGPGTVLCDNMSYIFMFL-SIATSNLVATSLTNRDKN 186 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig-~-lG~-~aLAA~gia~~i~~l~~~i~~gl-s~a~s~lVsq~lGagd~~ 186 (257)
+.++.++|++..+.........+...+++| + +|- ..++. ....+.++ |.++..-++-.+++++.|
T Consensus 75 ~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~----------Lia~GtsICG~SAi~A~a~~i~a~~~~ 143 (305)
T PF03601_consen 75 FSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAI----------LIAAGTSICGASAIAATAPVIKAKEED 143 (305)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH----------HHHhhcccchHHHHHHHcccccCCCCc
Confidence 567888888888888888888888888888 6 442 22221 12222232 333444556667787766
No 53
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=40.20 E-value=1.7e+02 Score=22.37 Aligned_cols=34 Identities=12% Similarity=-0.036 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHH
Q 025157 205 SMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQI 239 (257)
Q Consensus 205 l~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I 239 (257)
++++++|+....++.++... ||+..+.-..|++.
T Consensus 47 ~~gl~lw~v~h~~l~~mAK~-DP~~~~V~~Rh~ry 80 (94)
T PRK13823 47 LFGIALWFGALFALRLMAKA-DPKMRHVYLRHRRY 80 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHhhc
Confidence 34566667777777777543 99988887777764
No 54
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=40.09 E-value=1.5e+02 Score=21.77 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=32.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 025157 174 NLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221 (257)
Q Consensus 174 ~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf 221 (257)
.-+=+.+|..+.+-.+...+..+.++++..++..++...+...+...+
T Consensus 30 ~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (121)
T PF02687_consen 30 IAILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFL 77 (121)
T ss_pred HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577899999988888888888776655555444445555544443
No 55
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=39.76 E-value=3.2e+02 Score=26.43 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 025157 120 GPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFV 198 (257)
Q Consensus 120 iP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~l 198 (257)
.=.+.+++...+...+-+.+.-+ +|+..+|-.+ ....++..++ +-++-..+|+-..|++-......+..
T Consensus 61 ~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt---~~mT~vilvF-------aEVlPKt~Aa~~perva~~~s~~l~~ 130 (423)
T COG4536 61 TILIGNNLVNILASALATILGIRLYGDAGVAIAT---GVLTFVILVF-------AEVLPKTIAALYPERVALPSSFILAI 130 (423)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHHH-------HHhcchHHhhhChhhhhhhhhHHHHH
Confidence 33444555555555544444333 7776544433 3333333322 22456777888899988777666665
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 199 GLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 199 alii~ll~~lll~~~~~~Il~lf~~ 223 (257)
-..+..++..++-.+.+.++++|+-
T Consensus 131 l~~l~~Plv~lln~it~~llrl~gi 155 (423)
T COG4536 131 LVRLFGPLVWLLNAITRRLLRLLGI 155 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5555556666666788889999976
No 56
>PRK10711 hypothetical protein; Provisional
Probab=37.31 E-value=3e+02 Score=24.48 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~ 187 (257)
.+..+.+-+...|+.+..+...+..++....+++ +|-+.--..++. .-.+......-+++.+|. +..
T Consensus 78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~----------pkSVTtPIAm~is~~iGG-~~s- 145 (231)
T PRK10711 78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL----------PKSVTTPIAMAVGGSIGG-IPA- 145 (231)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh----------hhhhhHHHHHHHHHHhCC-cHH-
Confidence 4455667777888888888888888888888888 554332222221 223344444456677774 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~ 223 (257)
++.++.++.+++...+++++++++.-
T Consensus 146 ----------Lta~~ViitGi~Ga~~g~~llk~~rI 171 (231)
T PRK10711 146 ----------ISAVCVIFVGILGAVFGHTLLNAMRI 171 (231)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22333344455556678888888875
No 57
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=32.30 E-value=3.8e+02 Score=25.09 Aligned_cols=33 Identities=9% Similarity=-0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-cC
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIG-Q-GS 144 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig-~-lG 144 (257)
+.++..+|++..+..+......+....++| + +|
T Consensus 81 ~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 81 FPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567888898888887777777778778887 4 55
No 58
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=30.40 E-value=5.1e+02 Score=25.07 Aligned_cols=21 Identities=0% Similarity=-0.086 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHhcCC
Q 025157 203 GFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 203 ~ll~~lll~~~~~~Il~lf~~ 223 (257)
.+++++++++..+.+-+++..
T Consensus 465 ~~~~~v~~~~~~~~~~~~~~~ 485 (489)
T PRK10207 465 TLGVAVVMALMVPWLNRMINT 485 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334455555556677777665
No 59
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=30.09 E-value=1.9e+02 Score=27.25 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-Ch----HHHHHHHHHHHHHHHHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-G-SS----LELAALGPGTVLCDNMS 162 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~-l-G~----~aLAA~gia~~i~~l~~ 162 (257)
+...+++++++.+|.++....+-....+.+.++++ + |+ +++|..++..++--+-+
T Consensus 230 ~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y 290 (345)
T PF07260_consen 230 DSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPY 290 (345)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcc
Confidence 34467899999999999999999999999999999 4 33 45665555555544443
No 60
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=29.47 E-value=5.4e+02 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Q 025157 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS 145 (257)
Q Consensus 113 k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~ 145 (257)
++++.++.=...-|+.+.+.......++..+|.
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~ 36 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELGI 36 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 567777777777788888887777777666654
No 61
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=29.29 E-value=5e+02 Score=26.31 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025157 176 VATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFF 213 (257)
Q Consensus 176 Vsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~ 213 (257)
|=+++||++.+=..+.+.-+++++++-|++-.++.+..
T Consensus 557 IrkAlGA~~~~I~~qFL~Es~~l~~~GGiiGi~lg~~~ 594 (648)
T PRK10535 557 IRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLI 594 (648)
T ss_pred HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999888877766555554443
No 62
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=28.27 E-value=3.2e+02 Score=21.99 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSML 207 (257)
Q Consensus 166 ~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~ 207 (257)
..+.--.+-++++.+| ++++++.++.++...+++.+++.
T Consensus 7 fp~~fl~~Dii~E~yG---~~~a~~~i~~g~~~~~~~~~~~~ 45 (145)
T PF02592_consen 7 FPLTFLITDIISEVYG---KKAARKAIWIGFLANLLFSLLIW 45 (145)
T ss_pred HHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678889998 55777777777777666654443
No 63
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=27.91 E-value=5.8e+02 Score=24.96 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC-hH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 025157 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ--GS-SL-ELAALGPG---TVLCDNMSYIFMFLSIATSNLVATSLTN 182 (257)
Q Consensus 111 ~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~--lG-~~-aLAA~gia---~~i~~l~~~i~~gls~a~s~lVsq~lGa 182 (257)
.-|.+.++.+=..++++.+.-+.+-++-++|+ ++ ++ +-+.+.-+ .....+.+.+..++..=..+.+.+.+|+
T Consensus 256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~ 334 (477)
T TIGR01301 256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA 334 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678889999999999999999999999996 33 21 11233333 3444444555545555566777777774
No 64
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=27.87 E-value=4.5e+02 Score=25.70 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHH---Hc---cCC--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHhcCC
Q 025157 164 IFMFLSIATSNLVATS---LT---NRD--KNEVQHQISVLLFVGLACGFSM--LIFTKFFGMQALSAFTG 223 (257)
Q Consensus 164 i~~gls~a~s~lVsq~---lG---agd--~~~a~~~~~~~l~lalii~ll~--~lll~~~~~~Il~lf~~ 223 (257)
..++......+++-.. || .+| .+++++....+..+.+++-+.. +..+.+-++.+.....+
T Consensus 220 ~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 220 FSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3456666677777664 66 334 5666666555554444333322 22222235555555555
No 65
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.85 E-value=28 Score=37.25 Aligned_cols=13 Identities=31% Similarity=0.087 Sum_probs=6.9
Q ss_pred cCCCcccchhhhh
Q 025157 77 DISDTSVSLSAEK 89 (257)
Q Consensus 77 ~~~~~~~~~~~~~ 89 (257)
..+|..+|+.+++
T Consensus 856 ~~~d~~dse~~~~ 868 (1096)
T TIGR00927 856 GGSDGGDSEEEEE 868 (1096)
T ss_pred CCCCccccccccc
Confidence 4455566655544
No 66
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=26.10 E-value=5.3e+02 Score=23.83 Aligned_cols=77 Identities=5% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHH
Q 025157 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238 (257)
Q Consensus 159 ~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~ 238 (257)
.+....+.-+|.+.+++++ .+|. ...+||....=+++.++-.+++..++..+.+ ++.++..+ .+.-+..+...+.
T Consensus 208 a~~lvlGaNiGT~~ta~la-s~g~--~~~arr~Alahllfn~~g~ll~lp~~~~~~~-~~~~~~~~-~~~~ia~~HtlFN 282 (307)
T TIGR00704 208 ALCLVLGSNLGSGILAMLA-ASAA--NAAARRVALGHVLFNVVGSLIILPFVHLLAE-TMGKLSPD-KAELVAYFHVFFN 282 (307)
T ss_pred HHHHHHhcchhHHHHHHHH-HccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCC-hHHHHHHHHHHHH
Confidence 3444445557777777775 3554 3367777766677776555444443333333 34455541 2233344444443
Q ss_pred HH
Q 025157 239 IR 240 (257)
Q Consensus 239 I~ 240 (257)
+.
T Consensus 283 v~ 284 (307)
T TIGR00704 283 LV 284 (307)
T ss_pred HH
Confidence 33
No 67
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=25.85 E-value=4.7e+02 Score=23.14 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Q 025157 164 IFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSM-LIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGL 242 (257)
Q Consensus 164 i~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~-~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~ 242 (257)
+...+.....-..=+..-++|++++++..+.+..+......+. ..+...++...+..+.+. =|+ ...+-+.+..-
T Consensus 112 ~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~~~~-iP~---~v~~gl~vagg 187 (238)
T PF03609_consen 112 LLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQALLNA-IPE---WVLNGLNVAGG 187 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-hhH---HHHHHHHHHHH
Confidence 3344555555566667788999999988776665555555444 444344555544433221 233 23333444444
Q ss_pred HHHHHHHHHH
Q 025157 243 AWPAVLTGWV 252 (257)
Q Consensus 243 ~~p~~~l~~v 252 (257)
.+|..++.+.
T Consensus 188 ~LPAvGfAml 197 (238)
T PF03609_consen 188 MLPAVGFAML 197 (238)
T ss_pred HHHHHHHHHH
Confidence 4454444443
No 68
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=25.78 E-value=6.1e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=-0.103 Sum_probs=20.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH
Q 025157 105 DQSIWNQIKEIMKFTGPATGLWICGP 130 (257)
Q Consensus 105 ~~~~~~~~k~il~lgiP~~l~~l~~~ 130 (257)
...+++.+|.++|-++|..+..++..
T Consensus 9 ~~ld~~~~k~~~k~~i~~~i~~~l~~ 34 (459)
T PF10337_consen 9 DHLDRRSLKIMFKCWIAPWIALILCQ 34 (459)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999888776654
No 69
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=25.77 E-value=2.6e+02 Score=20.09 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025157 177 ATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQ 216 (257)
Q Consensus 177 sq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~ 216 (257)
+|.+++++. ....+...-..++++|.++++++...+..
T Consensus 24 ~qLiaR~~k--L~SGv~~~~~~G~aiG~~~AlvLv~ip~~ 61 (67)
T PRK13275 24 AQLIARNQK--LESGVIATGIIGFAIGFLLALLLVVVPPL 61 (67)
T ss_pred HHHHhhcch--hhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455655443 22223333345666666666665444433
No 70
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=24.91 E-value=2.2e+02 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 177 ATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKF 212 (257)
Q Consensus 177 sq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~ 212 (257)
+|.+++.+ +....+...-..++++|+++++++..
T Consensus 24 ~qLiaR~~--kL~SGv~~~~~~GfaiG~~~AlvLv~ 57 (64)
T PF09472_consen 24 AQLIARDQ--KLESGVMATGIKGFAIGFLFALVLVG 57 (64)
T ss_pred HHHhhhcc--hhHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 45666544 33344445555667777777666543
No 71
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=24.84 E-value=6.7e+02 Score=24.59 Aligned_cols=44 Identities=18% Similarity=0.036 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 025157 118 FTGPATGLWICG--PLMSLIDTAVIGQGSSLELAALGPGTVLCDNM 161 (257)
Q Consensus 118 lgiP~~l~~l~~--~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~ 161 (257)
+|+|..+..++. .+..++.+.++|++-++.-|+.-....+-+.+
T Consensus 128 lGlP~~v~~IFL~~GlaMil~t~~lGQLttQVNAshcMlDyINnyF 173 (512)
T PF03842_consen 128 LGLPDWVKFIFLDIGLAMILFTCVLGQLTTQVNASHCMLDYINNYF 173 (512)
T ss_pred ccCchHHHHHhhccchHHHHHHHhhccccHhhhhhhhHHHHHHHHH
Confidence 566666655543 45567788899999888888887766554433
No 72
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=24.83 E-value=7.2e+02 Score=24.94 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=22.6
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTK 211 (257)
Q Consensus 179 ~lGagd~~~a~~~~~~~l~lalii~ll~~lll~ 211 (257)
.-|...++++.+...+.+.+++.+|++.++++-
T Consensus 42 rtg~~~y~~larFW~Klf~InFavGVvTGivme 74 (522)
T PRK15097 42 LSGKQIYKDMTKFWGKLFGINFALGVATGLTME 74 (522)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhe
Confidence 346666677777777777777777777666554
No 73
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=24.74 E-value=5.5e+02 Score=23.73 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS 145 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~ 145 (257)
+.+.+.++-|.+-. ...+-..|+|+-|.
T Consensus 206 iNK~LAiaGPlLtG------iAA~gsafvG~~~~ 233 (313)
T PF14476_consen 206 INKGLAIAGPLLTG------IAAIGSAFVGSGGS 233 (313)
T ss_pred HhhhhhccchHHHH------HHHHHHHHcCCCch
Confidence 44667777776443 33456677777643
No 74
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=24.64 E-value=4.5e+02 Score=22.56 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=36.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHH
Q 025157 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKY 236 (257)
Q Consensus 172 ~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~Y 236 (257)
..++.-...+..+.++-++..+++...++++ .+++.++++.++++|+- +-+..+.|.-.
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~i----ll~f~~~G~~iL~~fgI--sl~afrIaGGi 81 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKANISSFII----LLIFLVFGDTILKLFGI--SIDAFRIAGGI 81 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 3344444455556666666666665544433 33445678999999998 66666665543
No 75
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=24.58 E-value=3.3e+02 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025157 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS 144 (257)
Q Consensus 111 ~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG 144 (257)
.+..++.+-+|. +++++..++.+=.+++||..|
T Consensus 113 ~mGt~mGVyLPc-lQnIlGVilFiRLtWvVG~AG 145 (1075)
T KOG2082|consen 113 RMGTLMGVYLPC-LQNILGVILFIRLTWVVGMAG 145 (1075)
T ss_pred ccceeeeeeHHH-HHHHHHHHHHHHHHHHhhhhH
Confidence 345566666775 788888888888899988865
No 76
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.77 E-value=7.1e+02 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHH
Q 025157 160 NMSYIFMFLSIATSNLVATSLTNRDKN 186 (257)
Q Consensus 160 l~~~i~~gls~a~s~lVsq~lGagd~~ 186 (257)
+.+.+...++.=++...-+.+|.++.+
T Consensus 304 ~~y~~~~~iaGy~S~~~yk~~~g~~W~ 330 (521)
T PF02990_consen 304 ILYALTSFIAGYVSARLYKSFGGKKWK 330 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCcee
Confidence 334444444555555677777766433
No 77
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=23.40 E-value=3.7e+02 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 129 GPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168 (257)
Q Consensus 129 ~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gl 168 (257)
+.++......+-+..++++++-.++...+..++..+...+
T Consensus 282 et~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~ 321 (488)
T KOG2325|consen 282 ETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLL 321 (488)
T ss_pred HhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHH
Confidence 5666777777778888999888888777777666655543
No 78
>PRK11111 hypothetical protein; Provisional
Probab=22.60 E-value=5.2e+02 Score=22.50 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHH
Q 025157 181 TNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYV 237 (257)
Q Consensus 181 Gagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL 237 (257)
...+.++-++..+++...+++ +.+++.+++++++++|+- +-+..+.|.-.+
T Consensus 35 ~~~s~~~r~~ia~~a~l~a~~----ill~f~~~G~~iL~~fGI--sl~afrIaGGii 85 (214)
T PRK11111 35 SHQTAAERNKTNLTANLSVAI----ILLISLFLGDFILNLFGI--SIDSFRIAGGIL 85 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 334555556666655544433 233445689999999998 766666665443
No 79
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=22.40 E-value=7e+02 Score=23.99 Aligned_cols=97 Identities=12% Similarity=-0.046 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCHHHHH
Q 025157 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSL--TNRDKNEVQ 189 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~l--Gagd~~~a~ 189 (257)
..++++--+|-.+-..+ ..++...+++.+ ...+..+-....+.-++...+...|.=+++++.+.+ |.=+.+...
T Consensus 277 ~~~~~~~R~~wL~v~~~---~~~~t~~ii~~f-~~~l~~~~~l~~~iP~i~~~~Gn~G~qs~~~~~r~l~~g~i~~~~~~ 352 (449)
T TIGR00400 277 ILVMAKNRIIWLLVLLV---SSTFTATIISNY-EDLLLSLVALANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKDFF 352 (449)
T ss_pred HHHHHHhccchHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCccchHH
Confidence 44555555555444433 233334455554 333443333223333333332223444445555555 443444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025157 190 HQISVLLFVGLACGFSMLIFTKF 212 (257)
Q Consensus 190 ~~~~~~l~lalii~ll~~lll~~ 212 (257)
+.+++=+..+++.|++++++.+.
T Consensus 353 ~~~~~e~~v~~~~g~~~g~~~~~ 375 (449)
T TIGR00400 353 KVILREICVSILVGAILASVNFL 375 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666555555443
No 80
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=21.93 E-value=6.3e+02 Score=23.24 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025157 165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFG 214 (257)
Q Consensus 165 ~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~ 214 (257)
...+...++.++|-.+|.+=..+.-+..++.+..+++..+.+.++...++
T Consensus 202 P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a 251 (318)
T PF05145_consen 202 PPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFA 251 (318)
T ss_pred CHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888999999875555444444444444444444443333333
No 81
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.92 E-value=3.6e+02 Score=20.44 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHH
Q 025157 185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYV 237 (257)
Q Consensus 185 ~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL 237 (257)
.+.+-+..+.+++..+.++.++.+.. +...-++++|.. --++-|..-.|+
T Consensus 3 ~~~~l~i~~~ai~~~L~l~~P~ll~a-lvvGLvIsifQA--~TQIqEqTLsFi 52 (89)
T COG1987 3 EEDVLDIGQEAIWLVLMLSAPVLLVA-LVVGLVISIFQA--ATQIQEQTLSFI 52 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHhH
Confidence 45667778888888888888776654 345677888877 666777777666
No 82
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=21.60 E-value=4.5e+02 Score=23.72 Aligned_cols=21 Identities=0% Similarity=0.033 Sum_probs=9.5
Q ss_pred HHHccCCHHHHHHHHHHHHHH
Q 025157 178 TSLTNRDKNEVQHQISVLLFV 198 (257)
Q Consensus 178 q~lGagd~~~a~~~~~~~l~l 198 (257)
+..|.+++++.++..+.+..+
T Consensus 36 ~~f~~~~~~~~~~~a~~~~~~ 56 (313)
T PF03916_consen 36 YLFGKKKYKPFRRLARLAALL 56 (313)
T ss_pred HHhCccccchhhHHHHHHHHH
Confidence 334554444444444444443
No 83
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=21.59 E-value=5.1e+02 Score=25.77 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-Ch----H---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 025157 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ--G-SS----L---ELAALGPG---TVLCDNMSYIFMFLSIATSNLV 176 (257)
Q Consensus 110 ~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~--l-G~----~---aLAA~gia---~~i~~l~~~i~~gls~a~s~lV 176 (257)
.+-+.+.++-+-.+++++.+.-..+.|+-|+|+ + |+ . +-=.+.-+ ..+-.+++.+..|+.....-..
T Consensus 276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l 355 (498)
T KOG0637|consen 276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL 355 (498)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 344677888899999999999999999999998 3 32 1 11111111 1233456677778888888899
Q ss_pred HHHHcc
Q 025157 177 ATSLTN 182 (257)
Q Consensus 177 sq~lGa 182 (257)
.+++|-
T Consensus 356 ~~~~g~ 361 (498)
T KOG0637|consen 356 SRKFGT 361 (498)
T ss_pred HHhcCc
Confidence 999993
No 84
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=21.34 E-value=4.4e+02 Score=21.26 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC
Q 025157 173 SNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 173 s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~ 223 (257)
.-++-+.+|+++.++.-......+.....+.-++..++....+.+.+.++.
T Consensus 103 ~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~ 153 (183)
T PF01595_consen 103 GEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGI 153 (183)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 347788899988888877777766666666667776677788888888876
No 85
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=21.31 E-value=7.5e+02 Score=23.88 Aligned_cols=23 Identities=0% Similarity=-0.125 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCC
Q 025157 201 ACGFSMLIFTKFFGMQALSAFTG 223 (257)
Q Consensus 201 ii~ll~~lll~~~~~~Il~lf~~ 223 (257)
+++++++++++...+.+-+++..
T Consensus 466 ~~~~~~a~~~~~~~~~~~k~~~~ 488 (500)
T PRK09584 466 IATAVIAVLMLLTAPKLNRMTQD 488 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344555566667777777765
No 86
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=21.09 E-value=2.2e+02 Score=27.19 Aligned_cols=62 Identities=11% Similarity=-0.035 Sum_probs=33.4
Q ss_pred hhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 025157 96 VEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVL 157 (257)
Q Consensus 96 ~~~~~~~l~~~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i 157 (257)
+++++++...+..+...|+++-+++-.++......-.....+..-..+|+..+.+.......
T Consensus 12 ~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~sl~~~y~~l~~ 73 (390)
T KOG3097|consen 12 ESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVSLGALYLSLID 73 (390)
T ss_pred CCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhhHHHHH
Confidence 33344444555556667777777776666655544333333333335677666655444333
No 87
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=21.09 E-value=6.7e+02 Score=25.01 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHccCCHH
Q 025157 116 MKFTGPATGLWICGPLMSLIDTAVIGQ----GSSLELAALGPGTVLCDNMSYIFMFLSI-----ATSNLVATSLTNRDKN 186 (257)
Q Consensus 116 l~lgiP~~l~~l~~~l~~~vd~~~Ig~----lG~~aLAA~gia~~i~~l~~~i~~gls~-----a~s~lVsq~lGagd~~ 186 (257)
+....|+..+.+..-+.+.=.+.+.|. +|-..++.-+........+-...++++. -.++++|+.|+++|.+
T Consensus 73 lVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 73 LVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 445556666555555444333333333 2333333332111111222222233443 4689999999999987
Q ss_pred H
Q 025157 187 E 187 (257)
Q Consensus 187 ~ 187 (257)
+
T Consensus 153 r 153 (498)
T COG3104 153 R 153 (498)
T ss_pred c
Confidence 4
No 88
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=20.96 E-value=2.7e+02 Score=27.65 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 025157 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC----------DNMSYIFMFLSIATSNLV 176 (257)
Q Consensus 107 ~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~----------~l~~~i~~gls~a~s~lV 176 (257)
..|+.+|...|.-.+. +.+++.++.+..+|.+.=-+.+.......+. ..++.....+|.....++
T Consensus 232 s~~kDl~~l~~~~v~v-----~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggii 306 (493)
T KOG1330|consen 232 SVWKDLKVLAKIKVFV-----LSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGII 306 (493)
T ss_pred chHHHHHHHHccCcee-----eehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHH
Confidence 3455555555544433 2233344444555554433333333222222 222333333555555566
Q ss_pred HHHHcc
Q 025157 177 ATSLTN 182 (257)
Q Consensus 177 sq~lGa 182 (257)
++.+-+
T Consensus 307 sd~~~~ 312 (493)
T KOG1330|consen 307 SDKLSR 312 (493)
T ss_pred HHHHHH
Confidence 665443
No 89
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=20.39 E-value=9.3e+02 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 025157 174 NLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221 (257)
Q Consensus 174 ~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf 221 (257)
.-+=+++|+.+.+-.+..+..+++++++.+++..++..++...+..++
T Consensus 304 i~i~kalGa~~~~i~~~~l~E~~~l~~~~~~lg~~l~~~~~~~~~~~~ 351 (803)
T TIGR03434 304 IAVRLALGAGRGRLVRQLLTESLLLALAGGALGLLLAYWGLRLLLALL 351 (803)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344578999999999999999988877665555544444444444443
No 90
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=20.27 E-value=5.6e+02 Score=22.02 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 167 FLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIF 209 (257)
Q Consensus 167 gls~a~s~lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~ll 209 (257)
.+.--.+-++++.+| ++++++.++.++...++..+++.+.
T Consensus 40 p~tfl~~Dii~E~yG---~~~A~~~V~~gf~~~i~~~~~~~~~ 79 (202)
T TIGR00697 40 PGTFLATDVLREIYG---KKDARKAIFVGFISALLFSVLTQLH 79 (202)
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445668999999 4578888888887777666555444
Done!