Query 025157
Match_columns 257
No_of_seqs 305 out of 1324
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.7 1.2E-16 3.9E-21 148.5 13.0 149 106-256 231-379 (460)
2 3mkt_A Multi antimicrobial ext 99.6 3.9E-16 1.3E-20 144.9 9.9 147 108-257 7-153 (460)
3 4a01_A Proton pyrophosphatase; 41.5 2.8E+02 0.0096 27.6 12.6 61 112-172 627-689 (766)
4 2zy9_A Mg2+ transporter MGTE; 34.1 2.8E+02 0.0096 25.5 15.8 75 137-212 323-399 (473)
5 2ww9_B Protein transport prote 24.7 1.9E+02 0.0064 20.4 5.8 49 71-119 6-54 (80)
6 4av3_A K(+)-stimulated pyropho 24.1 2.6E+02 0.0087 27.9 8.5 65 109-173 602-668 (735)
7 4hkr_A Calcium release-activat 9.7 7.6E+02 0.026 20.5 15.1 79 144-223 56-142 (214)
8 4ezc_A UREA transporter 1; mem 9.2 3.7E+02 0.012 24.5 4.9 55 144-203 73-129 (384)
9 3bbo_R Ribosomal protein L19; 7.8 85 0.0029 26.7 0.0 6 57-62 70-75 (233)
10 1v54_C Cytochrome C oxidase po 7.4 9.8E+02 0.034 20.0 7.2 25 169-193 140-164 (261)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.69 E-value=1.2e-16 Score=148.50 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=141.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Q 025157 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185 (257)
Q Consensus 106 ~~~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~ 185 (257)
+.+++..|+++++++|.+++++.+.+...+|+.+++++|++++|+++++.++.++...+..+++.+..+.+++++|+||+
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025157 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSA 256 (257)
Q Consensus 186 ~~a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~ga 256 (257)
+++++..+.++.+++++++++++++++++++++.+|.. |+++.+.+..++++.+++.++..++.+..++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 379 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGS 379 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999999988877654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.64 E-value=3.9e-16 Score=144.90 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Q 025157 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (257)
Q Consensus 108 ~~~~~k~il~lgiP~~l~~l~~~l~~~vd~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~ 187 (257)
.++..|++++.++|.+++++...+.+.+|+.++|++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~ 86 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHK 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025157 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAR 257 (257)
Q Consensus 188 a~~~~~~~l~lalii~ll~~lll~~~~~~Il~lf~~~~d~ev~~~a~~YL~I~~~~~p~~~l~~v~~gaf 257 (257)
+++..+.++.+.++++++++++ +.+.++++.+++. |+++.+.+..|+++..++.++..+..+..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 153 (460)
T 3mkt_A 87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFT 153 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987765 6788999999988 99999999999999999999999988877653
No 3
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=41.50 E-value=2.8e+02 Score=27.65 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 112 IKEIMKFTGPATGLWICGP-LMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIAT 172 (257)
Q Consensus 112 ~k~il~lgiP~~l~~l~~~-l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~ 172 (257)
+++...+.--..+.+.+.+ +..++.-..+|- +|.++++++=++..+..+...+++.-+.|+
T Consensus 627 Y~rcV~I~T~aAlkeMi~Pgllav~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai~maNaGGA 689 (766)
T 4a01_A 627 YATCVKISTDASIKEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGA 689 (766)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3455555554444443332 223334445565 699999998888888888887777766554
No 4
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=34.11 E-value=2.8e+02 Score=25.48 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=38.3
Q ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 137 TAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRD--KNEVQHQISVLLFVGLACGFSMLIFTKF 212 (257)
Q Consensus 137 ~~~Ig~lG~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd--~~~a~~~~~~~l~lalii~ll~~lll~~ 212 (257)
..++++++ ..++.+.....+.-++...+...|+-+.+++-+.+..|+ .+...+.+++=+..+++.|++++++..+
T Consensus 323 ~~vi~~fe-~~l~~~~~l~~~~P~v~~~gGn~Gtq~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~ 399 (473)
T 2zy9_A 323 SSILQGFE-SVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVG 399 (473)
T ss_dssp HHHHHHTH-HHHHHCSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556653 334433222222333333333345566666666665554 4455666666666666666666655443
No 5
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=24.72 E-value=1.9e+02 Score=20.45 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=20.5
Q ss_pred cccccccCCCcccchhhhhHHHHhhhhhccccccccccHHHHHHHHHHH
Q 025157 71 EFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFT 119 (257)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k~il~lg 119 (257)
|+..+.++.-+...+..|.-.+.-++...--....+++++++.++.+.+
T Consensus 6 ~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t 54 (80)
T 2ww9_B 6 EKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAV 54 (80)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444445554555555555555555554445567778887666665543
No 6
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=24.13 E-value=2.6e+02 Score=27.86 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 109 WNQIKEIMKFTGPATGLWICG-PLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATS 173 (257)
Q Consensus 109 ~~~~k~il~lgiP~~l~~l~~-~l~~~vd~~~Ig~-lG~~aLAA~gia~~i~~l~~~i~~gls~a~s 173 (257)
++.+++...+.--..+.+.+. .+..++.-..+|- +|.++++++=++..+..+...+++.=+.|+=
T Consensus 602 kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G~~~Ai~m~n~GGAW 668 (735)
T 4av3_A 602 KPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSGGAW 668 (735)
T ss_dssp ---CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 344555555555555544432 2233333444555 7999999998888888888888777665553
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=9.66 E-value=7.6e+02 Score=20.48 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025157 144 SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATS--------LTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGM 215 (257)
Q Consensus 144 G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~--------lGagd~~~a~~~~~~~l~lalii~ll~~lll~~~~~ 215 (257)
...-+.+++++..+.-.+..+.+-+++-.-+-|-.. ....-++|.+.++-.+..++.++|+++.+.-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344578888888887777776666665443333222 224457888999999988888888877665444443
Q ss_pred HHHHhcCC
Q 025157 216 QALSAFTG 223 (257)
Q Consensus 216 ~Il~lf~~ 223 (257)
| +++...
T Consensus 136 W-VKF~~~ 142 (214)
T 4hkr_A 136 W-VKFYDL 142 (214)
T ss_dssp H-HHHTTT
T ss_pred e-EEeecC
Confidence 3 456655
No 8
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=9.25 E-value=3.7e+02 Score=24.46 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH--HHHHHHHHHHHHH
Q 025157 144 SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH--QISVLLFVGLACG 203 (257)
Q Consensus 144 G~~aLAA~gia~~i~~l~~~i~~gls~a~s~lVsq~lGagd~~~a~~--~~~~~l~lalii~ 203 (257)
|---++|..+.+.-.. +...+|..++++.+..+|.. +++++. +..++...++.++
T Consensus 73 GlliLigl~i~sp~~a----l~allG~~vstltA~llg~~-~~~I~~GLyGfNg~Lvgial~ 129 (384)
T 4ezc_A 73 GILILVGLLVQNPWCA----LNGCVGTVVSTLTALLLSQD-RSAITAGLQGYNATLVGILMA 129 (384)
T ss_dssp HHHHHHHHHHHCHHHH----HHHHHHHHHHHHHHHHTTCC-HHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHhCCC-HHHHHcchhhhhHHHHHHHHH
Confidence 3344455555444433 33346667777888888864 444433 4455555554443
No 9
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=7.77 E-value=85 Score=26.67 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=0.0
Q ss_pred ccchhh
Q 025157 57 HQKRFI 62 (257)
Q Consensus 57 ~~~~~~ 62 (257)
.+.+|+
T Consensus 70 ~~~~f~ 75 (233)
T 3bbo_R 70 ARNSFV 75 (233)
T ss_dssp ------
T ss_pred ccccee
Confidence 333444
No 10
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=7.45 E-value=9.8e+02 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHH
Q 025157 169 SIATSNLVATSLTNRDKNEVQHQIS 193 (257)
Q Consensus 169 s~a~s~lVsq~lGagd~~~a~~~~~ 193 (257)
+..+....-+++-+||+++++....
T Consensus 140 Ss~t~~~A~~a~~~~~~~~~~~~L~ 164 (261)
T 1v54_C 140 SGVSITWAHHSLMEGDRKHMLQALF 164 (261)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3444445556666777776655433
Done!