Query 025157
Match_columns 257
No_of_seqs 305 out of 1324
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 04:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025157.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025157hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 14.4 2.6E+02 0.019 21.6 12.0 16 173-188 305-320 (447)
2 d2yvxa3 f.57.1.1 (A:276-448) M 13.8 84 0.0061 23.4 4.1 43 168-210 55-99 (173)
3 d2qtia1 a.284.1.1 (A:8-72) Unc 5.0 3.8E+02 0.028 16.5 3.8 31 166-196 28-58 (65)
4 d2jrxa1 a.284.1.1 (A:1-75) Unc 4.5 4.4E+02 0.032 16.6 4.9 33 165-197 34-66 (75)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.9 1.4E+02 0.01 17.9 0.7 28 176-203 2-29 (53)
6 d2onkc1 f.58.1.1 (C:1-252) Mol 3.9 4.7E+02 0.034 18.9 4.4 33 175-207 160-192 (252)
7 d2hyda2 f.37.1.1 (A:1-323) Put 3.7 6.9E+02 0.05 17.7 7.0 11 118-128 244-254 (323)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 3.7 6.8E+02 0.049 17.6 9.7 57 114-170 235-294 (319)
9 d2juza1 a.284.1.1 (A:1-72) Unc 3.7 5.1E+02 0.037 16.1 3.7 32 166-197 35-66 (72)
10 d2csba3 a.60.2.4 (A:410-464) T 3.5 2.1E+02 0.015 16.5 1.3 21 214-236 15-35 (55)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.40 E-value=2.6e+02 Score=21.56 Aligned_cols=16 Identities=0% Similarity=0.144 Sum_probs=8.3
Q ss_pred HHHHHHHHccCCHHHH
Q 025157 173 SNLVATSLTNRDKNEV 188 (257)
Q Consensus 173 s~lVsq~lGagd~~~a 188 (257)
...++..+|++.....
T Consensus 305 ~g~~~~~~~~~~~~~~ 320 (447)
T d1pw4a_ 305 CGWMSDKVFRGNRGAT 320 (447)
T ss_dssp HHHHHHHTSTTCHHHH
T ss_pred hhhhhhhccccccccc
Confidence 3455566665554433
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.78 E-value=84 Score=23.36 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 168 LSIATSNLVATSLTNR--DKNEVQHQISVLLFVGLACGFSMLIFT 210 (257)
Q Consensus 168 ls~a~s~lVsq~lGag--d~~~a~~~~~~~l~lalii~ll~~lll 210 (257)
.|.=+.+++-|.+.-| +.++.++.+++=+..+++.+++++++.
T Consensus 55 ~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 55 TGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp HHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566665444 555667777776777777776666543
No 3
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=4.99 E-value=3.8e+02 Score=16.45 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 025157 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLL 196 (257)
Q Consensus 166 ~gls~a~s~lVsq~lGagd~~~a~~~~~~~l 196 (257)
|.+|..++-++-+...+.+++.+-+.+.+++
T Consensus 28 MvLGN~vTniln~~V~~~qR~~iAe~Fa~AL 58 (65)
T d2qtia1 28 MALGNCVTHLLERKVPSESRQAVAEQFAKAL 58 (65)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 4456666666666666655555555555444
No 4
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=4.46 E-value=4.4e+02 Score=16.56 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157 165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLF 197 (257)
Q Consensus 165 ~~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~ 197 (257)
.|.+|..++-++-+..++.+++.+-+.+.+++.
T Consensus 34 LMvLGN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T d2jrxa1 34 LMVLGNMVTNLINTSIAPAQRQAIANSFARALQ 66 (75)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 356677778888888888888777777766654
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.86 E-value=1.4e+02 Score=17.91 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=18.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 025157 176 VATSLTNRDKNEVQHQISVLLFVGLACG 203 (257)
Q Consensus 176 Vsq~lGagd~~~a~~~~~~~l~lalii~ 203 (257)
.++.+|.+..+-++..+..+...+.+-+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 4566777777777777777665554433
No 6
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.86 E-value=4.7e+02 Score=18.92 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=22.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 175 LVATSLTNRDKNEVQHQISVLLFVGLACGFSML 207 (257)
Q Consensus 175 lVsq~lGagd~~~a~~~~~~~l~lalii~ll~~ 207 (257)
-.+|..|+++.+..++..-=.+.=+++.+.++.
T Consensus 160 eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~ 192 (252)
T d2onkc1 160 HVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMS 192 (252)
T ss_dssp HHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccccceEEEhHHhHHHHHHHHHHH
Confidence 478999999999988876555544444444443
No 7
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=3.74 E-value=6.9e+02 Score=17.70 Aligned_cols=11 Identities=0% Similarity=-0.260 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025157 118 FTGPATGLWIC 128 (257)
Q Consensus 118 lgiP~~l~~l~ 128 (257)
.+....+.++.
T Consensus 244 ~~~~~~~~~~~ 254 (323)
T d2hyda2 244 NAYSFAAINTV 254 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcccccccc
Confidence 33333333333
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.74 E-value=6.8e+02 Score=17.64 Aligned_cols=57 Identities=7% Similarity=-0.170 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025157 114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ---GSSLELAALGPGTVLCDNMSYIFMFLSI 170 (257)
Q Consensus 114 ~il~lgiP~~l~~l~~~l~~~vd~~~Ig~---lG~~aLAA~gia~~i~~l~~~i~~gls~ 170 (257)
.....++...+..+...+...+...+.+. -|...++.+.........+..+...++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~ 294 (319)
T d3b60a2 235 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 294 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555444443333333 2444444444444444444444444443
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=3.74 E-value=5.1e+02 Score=16.13 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025157 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLF 197 (257)
Q Consensus 166 ~gls~a~s~lVsq~lGagd~~~a~~~~~~~l~ 197 (257)
|.+|..++-++-+..++.+++.+-+.+.+++.
T Consensus 35 MvLGN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (72)
T d2juza1 35 IALGNMASNLLTTSVPQTQCEALAQAFSNSLI 66 (72)
T ss_dssp HHHHHHHHHHHTTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665555543
No 10
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.45 E-value=2.1e+02 Score=16.48 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCCChhHHHHHHHH
Q 025157 214 GMQALSAFTGSKNVHILPAANKY 236 (257)
Q Consensus 214 ~~~Il~lf~~~~d~ev~~~a~~Y 236 (257)
++-+++.|+. ++.+.+++..|
T Consensus 15 aerllrafgn--pervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGN--PERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSS--HHHHHHHHHTT
T ss_pred HHHHHHHhCC--HHHHHHHHHHH
Confidence 4567788887 67777777654
Done!