Query 025159
Match_columns 257
No_of_seqs 117 out of 1314
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 7E-58 1.5E-62 387.6 21.2 217 12-257 3-220 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 2.4E-57 5.1E-62 384.5 22.5 233 14-257 6-241 (300)
3 COG0667 Tas Predicted oxidored 100.0 3.7E-50 8.1E-55 351.7 22.7 222 12-257 1-263 (316)
4 KOG1575 Voltage-gated shaker-l 100.0 1.8E-49 4E-54 342.2 22.0 230 6-257 6-279 (336)
5 TIGR01293 Kv_beta voltage-depe 100.0 2.2E-48 4.7E-53 342.2 22.5 222 14-257 1-270 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 3.9E-48 8.5E-53 344.2 24.4 227 10-257 11-286 (346)
7 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.4E-48 7.4E-53 333.2 22.9 206 23-257 2-208 (267)
8 PRK10625 tas putative aldo-ket 100.0 9.3E-48 2E-52 342.0 23.4 238 12-257 1-293 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1E-46 2.2E-51 325.2 22.9 214 13-257 5-218 (275)
10 PLN02587 L-galactose dehydroge 100.0 1.1E-46 2.5E-51 330.9 22.8 225 14-257 1-250 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 2.9E-46 6.4E-51 323.9 23.3 222 14-257 1-241 (285)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.5E-44 3.2E-49 313.0 17.8 211 26-257 1-237 (283)
13 PRK10376 putative oxidoreducta 100.0 3.1E-43 6.8E-48 305.8 22.5 214 14-257 9-242 (290)
14 PRK14863 bifunctional regulato 100.0 2.2E-43 4.8E-48 306.6 16.9 210 22-257 3-236 (292)
15 COG4989 Predicted oxidoreducta 100.0 3E-43 6.5E-48 287.4 12.4 224 12-257 1-247 (298)
16 KOG1576 Predicted oxidoreducta 100.0 2.4E-38 5.2E-43 260.6 14.1 228 9-256 19-274 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.4E-37 5.1E-42 265.7 16.5 219 12-256 1-235 (391)
18 KOG3023 Glutamate-cysteine lig 99.1 1.7E-09 3.7E-14 88.7 11.1 157 65-221 52-227 (285)
19 PF07021 MetW: Methionine bios 93.2 1 2.2E-05 36.7 9.2 101 107-225 63-170 (193)
20 cd03319 L-Ala-DL-Glu_epimerase 92.8 6.3 0.00014 34.5 15.9 151 37-224 133-289 (316)
21 TIGR00381 cdhD CO dehydrogenas 92.2 4.8 0.0001 36.3 12.9 129 102-256 128-272 (389)
22 PRK08392 hypothetical protein; 90.1 9.6 0.00021 31.4 13.4 183 40-255 14-209 (215)
23 cd03316 MR_like Mandelate race 89.6 14 0.00031 32.8 16.4 149 38-222 139-299 (357)
24 COG0635 HemN Coproporphyrinoge 89.5 3.4 7.3E-05 38.0 9.8 75 98-176 200-276 (416)
25 cd00423 Pterin_binding Pterin 88.2 15 0.00032 31.3 12.4 108 100-224 22-130 (258)
26 PRK04452 acetyl-CoA decarbonyl 86.1 7.6 0.00016 34.3 9.5 118 110-255 83-206 (319)
27 PRK07535 methyltetrahydrofolat 85.5 12 0.00027 32.0 10.3 135 100-256 23-158 (261)
28 cd01973 Nitrogenase_VFe_beta_l 85.4 26 0.00056 32.6 13.2 116 61-190 66-191 (454)
29 COG0159 TrpA Tryptophan syntha 85.2 13 0.00029 31.9 10.2 72 149-222 77-155 (265)
30 COG2069 CdhD CO dehydrogenase/ 84.3 22 0.00048 31.0 11.0 98 111-224 159-261 (403)
31 cd03315 MLE_like Muconate lact 82.8 28 0.00062 29.5 15.4 152 38-225 85-242 (265)
32 cd01965 Nitrogenase_MoFe_beta_ 81.7 43 0.00092 30.8 13.3 115 62-192 62-187 (428)
33 TIGR00190 thiC thiamine biosyn 81.5 23 0.0005 32.2 10.5 141 37-219 74-221 (423)
34 cd00739 DHPS DHPS subgroup of 80.4 36 0.00078 29.1 13.8 137 100-256 22-170 (257)
35 PRK13352 thiamine biosynthesis 79.4 30 0.00065 31.6 10.6 145 37-223 74-228 (431)
36 PRK08609 hypothetical protein; 78.1 51 0.0011 31.7 12.6 183 41-255 350-553 (570)
37 cd03322 rpsA The starvation se 78.0 51 0.0011 29.5 14.8 145 38-223 126-274 (361)
38 TIGR01928 menC_lowGC/arch o-su 77.7 49 0.0011 29.1 14.8 150 38-225 132-285 (324)
39 PF01408 GFO_IDH_MocA: Oxidore 77.2 25 0.00054 25.5 8.9 86 157-251 16-115 (120)
40 COG1149 MinD superfamily P-loo 76.6 20 0.00044 30.9 8.3 67 157-225 180-250 (284)
41 PRK06361 hypothetical protein; 75.9 42 0.00091 27.4 13.4 180 40-255 10-196 (212)
42 COG1748 LYS9 Saccharopine dehy 75.5 24 0.00052 32.1 9.1 81 39-131 78-159 (389)
43 COG2102 Predicted ATPases of P 75.3 6.8 0.00015 32.6 5.0 98 149-253 74-177 (223)
44 COG2200 Rtn c-di-GMP phosphodi 75.1 37 0.00081 28.8 9.9 131 66-221 69-213 (256)
45 COG1140 NarY Nitrate reductase 74.1 2.9 6.3E-05 37.5 2.8 53 163-216 263-317 (513)
46 TIGR01496 DHPS dihydropteroate 73.4 57 0.0012 27.8 12.7 104 100-221 21-125 (257)
47 PLN00191 enolase 73.0 82 0.0018 29.4 14.4 80 120-221 311-395 (457)
48 KOG0369 Pyruvate carboxylase [ 72.9 37 0.00081 33.2 9.8 145 39-225 42-195 (1176)
49 cd03174 DRE_TIM_metallolyase D 72.5 31 0.00068 29.0 8.8 102 100-221 17-135 (265)
50 COG0422 ThiC Thiamine biosynth 72.0 78 0.0017 28.7 13.2 171 37-250 75-258 (432)
51 cd03323 D-glucarate_dehydratas 71.8 80 0.0017 28.8 14.2 146 38-223 168-321 (395)
52 PRK13602 putative ribosomal pr 71.8 10 0.00022 26.3 4.6 58 157-221 3-60 (82)
53 cd00308 enolase_like Enolase-s 71.6 49 0.0011 27.4 9.6 70 154-225 134-207 (229)
54 cd07944 DRE_TIM_HOA_like 4-hyd 71.5 53 0.0011 28.1 10.0 110 98-220 16-128 (266)
55 cd00740 MeTr MeTr subgroup of 71.4 64 0.0014 27.5 11.7 104 100-223 24-128 (252)
56 PF03102 NeuB: NeuB family; I 69.7 29 0.00062 29.4 7.8 116 37-179 53-185 (241)
57 PRK13796 GTPase YqeH; Provisio 69.2 87 0.0019 28.2 13.4 134 25-183 34-180 (365)
58 cd01974 Nitrogenase_MoFe_beta 68.9 96 0.0021 28.6 13.1 115 61-191 65-191 (435)
59 PRK07945 hypothetical protein; 68.7 85 0.0019 27.9 17.4 181 39-255 110-319 (335)
60 KOG1576 Predicted oxidoreducta 68.2 48 0.001 28.8 8.6 150 24-217 104-270 (342)
61 cd06543 GH18_PF-ChiA-like PF-C 68.0 83 0.0018 27.5 16.1 176 26-225 71-264 (294)
62 TIGR00735 hisF imidazoleglycer 67.5 76 0.0016 26.8 11.6 64 154-217 188-253 (254)
63 PF00809 Pterin_bind: Pterin b 66.7 44 0.00094 27.5 8.2 68 150-223 56-125 (210)
64 PRK13307 bifunctional formalde 65.6 79 0.0017 28.9 10.1 157 63-224 79-260 (391)
65 PRK14017 galactonate dehydrata 64.3 1.1E+02 0.0024 27.6 13.9 149 38-222 124-287 (382)
66 cd02801 DUS_like_FMN Dihydrour 63.8 78 0.0017 26.0 9.3 129 37-189 64-208 (231)
67 cd01967 Nitrogenase_MoFe_alpha 63.7 1.2E+02 0.0025 27.6 13.6 162 62-250 68-258 (406)
68 COG1099 Predicted metal-depend 62.9 92 0.002 26.2 9.7 100 150-257 44-162 (254)
69 TIGR02932 vnfK_nitrog V-contai 62.9 1.3E+02 0.0029 28.0 13.9 117 61-192 69-197 (457)
70 cd03321 mandelate_racemase Man 62.8 1.1E+02 0.0025 27.2 14.3 148 38-221 141-295 (355)
71 PRK08446 coproporphyrinogen II 62.7 78 0.0017 28.2 9.6 121 43-176 98-231 (350)
72 PRK07379 coproporphyrinogen II 62.2 66 0.0014 29.3 9.2 126 43-177 115-256 (400)
73 PRK01018 50S ribosomal protein 61.5 26 0.00057 25.1 5.2 61 153-220 4-64 (99)
74 PF00682 HMGL-like: HMGL-like 61.2 78 0.0017 26.2 8.9 94 103-217 14-124 (237)
75 PRK00208 thiG thiazole synthas 60.7 1.1E+02 0.0023 26.2 18.4 165 24-223 10-184 (250)
76 COG2089 SpsE Sialic acid synth 60.2 1.3E+02 0.0027 26.9 10.4 122 37-184 87-224 (347)
77 cd01966 Nitrogenase_NifN_1 Nit 59.8 1.4E+02 0.0031 27.4 13.3 114 62-191 62-188 (417)
78 PRK06015 keto-hydroxyglutarate 59.6 34 0.00074 28.1 6.2 60 153-219 42-102 (201)
79 TIGR02026 BchE magnesium-proto 59.5 1.6E+02 0.0034 27.7 12.7 126 100-252 223-369 (497)
80 PRK00164 moaA molybdenum cofac 59.3 1.2E+02 0.0027 26.5 15.3 160 37-216 49-225 (331)
81 COG4152 ABC-type uncharacteriz 58.9 97 0.0021 26.7 8.7 72 99-185 102-199 (300)
82 TIGR01182 eda Entner-Doudoroff 58.9 35 0.00075 28.1 6.1 60 153-219 46-106 (204)
83 PRK13958 N-(5'-phosphoribosyl) 58.8 49 0.0011 27.2 7.1 67 111-197 16-83 (207)
84 KOG2367 Alpha-isopropylmalate 58.6 1.6E+02 0.0035 27.6 11.6 95 29-129 193-289 (560)
85 PRK13347 coproporphyrinogen II 58.6 57 0.0012 30.3 8.3 126 43-177 152-292 (453)
86 PF15221 LEP503: Lens epitheli 58.0 15 0.00033 23.2 2.9 31 3-33 6-36 (61)
87 PRK05692 hydroxymethylglutaryl 57.8 76 0.0017 27.5 8.4 98 103-218 26-137 (287)
88 PF06506 PrpR_N: Propionate ca 57.6 20 0.00043 28.6 4.4 66 150-220 63-131 (176)
89 PRK01222 N-(5'-phosphoribosyl) 57.4 1.1E+02 0.0023 25.2 9.2 67 111-197 18-85 (210)
90 cd04728 ThiG Thiazole synthase 57.3 1.2E+02 0.0026 25.8 18.1 108 98-223 72-184 (248)
91 PRK00912 ribonuclease P protei 56.9 1.1E+02 0.0025 25.4 10.4 169 39-255 15-202 (237)
92 PRK08208 coproporphyrinogen II 56.6 1.1E+02 0.0023 28.2 9.7 123 43-176 141-275 (430)
93 COG1908 FrhD Coenzyme F420-red 56.5 78 0.0017 23.8 6.9 71 43-118 43-127 (132)
94 PRK02901 O-succinylbenzoate sy 56.5 70 0.0015 28.4 8.1 70 154-225 173-243 (327)
95 PRK06294 coproporphyrinogen II 56.3 75 0.0016 28.6 8.4 128 43-177 103-244 (370)
96 TIGR01278 DPOR_BchB light-inde 56.2 1.8E+02 0.004 27.5 12.5 160 63-252 67-265 (511)
97 COG2159 Predicted metal-depend 56.0 1.4E+02 0.003 26.0 10.6 113 112-248 55-190 (293)
98 PF04748 Polysacc_deac_2: Dive 55.9 1.2E+02 0.0025 25.1 8.9 85 37-127 71-183 (213)
99 cd03325 D-galactonate_dehydrat 55.9 1.5E+02 0.0032 26.4 15.5 148 38-221 123-285 (352)
100 COG0673 MviM Predicted dehydro 53.9 1.2E+02 0.0026 26.4 9.3 85 158-251 21-120 (342)
101 PRK10415 tRNA-dihydrouridine s 53.9 1.6E+02 0.0034 26.0 11.9 129 37-189 74-219 (321)
102 TIGR02931 anfK_nitrog Fe-only 53.4 1.9E+02 0.0042 26.9 13.6 114 62-191 73-199 (461)
103 PF07287 DUF1446: Protein of u 53.0 41 0.00089 30.3 6.1 91 153-256 11-104 (362)
104 PLN02746 hydroxymethylglutaryl 52.9 1.3E+02 0.0027 27.1 9.1 99 102-218 67-179 (347)
105 TIGR01862 N2-ase-Ialpha nitrog 52.9 1.9E+02 0.0042 26.7 13.5 112 62-191 98-221 (443)
106 TIGR03677 rpl7ae 50S ribosomal 52.8 62 0.0013 24.0 6.1 65 151-221 12-76 (117)
107 PRK00730 rnpA ribonuclease P; 52.8 85 0.0018 24.2 6.9 63 84-163 46-110 (138)
108 CHL00076 chlB photochlorophyll 52.6 2.1E+02 0.0046 27.1 13.6 162 63-252 67-267 (513)
109 PF02817 E3_binding: e3 bindin 51.6 19 0.0004 21.2 2.5 20 236-255 4-23 (39)
110 cd03327 MR_like_2 Mandelate ra 51.6 1.7E+02 0.0038 25.8 15.8 148 38-221 120-280 (341)
111 PRK09058 coproporphyrinogen II 51.0 73 0.0016 29.5 7.6 102 24-174 174-302 (449)
112 TIGR03597 GTPase_YqeH ribosome 50.9 1.8E+02 0.0038 26.1 9.9 133 25-182 28-173 (360)
113 PRK02910 light-independent pro 50.7 2.3E+02 0.0049 26.9 12.6 159 63-252 67-262 (519)
114 PRK10550 tRNA-dihydrouridine s 49.7 1.8E+02 0.0039 25.5 14.1 130 37-187 72-217 (312)
115 cd01822 Lysophospholipase_L1_l 49.5 1.2E+02 0.0026 23.3 8.0 89 163-252 36-138 (177)
116 TIGR02534 mucon_cyclo muconate 49.3 92 0.002 27.9 7.8 69 153-223 226-298 (368)
117 PRK14461 ribosomal RNA large s 49.1 1.5E+02 0.0032 26.9 8.9 98 123-225 232-352 (371)
118 PRK15072 bifunctional D-altron 48.9 1.2E+02 0.0026 27.7 8.6 68 154-223 246-317 (404)
119 PLN02363 phosphoribosylanthran 48.8 88 0.0019 26.7 7.2 65 113-197 64-130 (256)
120 cd08319 Death_RAIDD Death doma 48.7 23 0.0005 24.7 3.0 72 102-195 10-81 (83)
121 TIGR01228 hutU urocanate hydra 48.1 77 0.0017 29.8 7.0 130 43-198 106-259 (545)
122 PF01081 Aldolase: KDPG and KH 47.8 41 0.0009 27.5 4.9 59 151-219 47-106 (196)
123 PLN02444 HMP-P synthase 47.8 1.8E+02 0.0039 27.9 9.4 139 37-219 234-379 (642)
124 PRK05414 urocanate hydratase; 47.8 82 0.0018 29.8 7.1 130 43-198 115-268 (556)
125 PRK13361 molybdenum cofactor b 47.7 2E+02 0.0043 25.3 18.4 109 37-165 45-154 (329)
126 TIGR01210 conserved hypothetic 47.7 1.9E+02 0.0042 25.3 14.5 181 38-251 86-282 (313)
127 PRK09284 thiamine biosynthesis 47.5 2E+02 0.0044 27.5 9.7 169 37-250 229-410 (607)
128 PRK06683 hypothetical protein; 47.3 54 0.0012 22.7 4.7 58 157-221 3-60 (82)
129 PRK06552 keto-hydroxyglutarate 46.7 79 0.0017 26.2 6.5 60 153-219 51-114 (213)
130 cd01981 Pchlide_reductase_B Pc 46.3 2.4E+02 0.0051 25.9 12.9 160 64-251 68-265 (430)
131 COG0135 TrpF Phosphoribosylant 46.2 1.7E+02 0.0037 24.2 9.1 81 112-218 18-102 (208)
132 PF00113 Enolase_C: Enolase, C 46.1 2E+02 0.0044 25.1 9.6 99 100-223 134-237 (295)
133 PRK08776 cystathionine gamma-s 46.0 2.3E+02 0.0051 25.8 10.2 73 152-225 111-186 (405)
134 COG1121 ZnuC ABC-type Mn/Zn tr 45.8 1.1E+02 0.0023 26.3 7.1 50 118-182 156-205 (254)
135 cd07939 DRE_TIM_NifV Streptomy 45.5 1.9E+02 0.0041 24.5 10.4 95 102-219 19-128 (259)
136 PRK13803 bifunctional phosphor 45.4 2.2E+02 0.0047 27.7 10.1 89 112-218 19-108 (610)
137 COG0821 gcpE 1-hydroxy-2-methy 45.3 2.3E+02 0.0049 25.4 10.4 93 101-218 35-127 (361)
138 cd01821 Rhamnogalacturan_acety 45.2 1.5E+02 0.0033 23.4 8.1 89 165-253 36-150 (198)
139 PLN02428 lipoic acid synthase 45.2 2.3E+02 0.005 25.5 11.5 166 37-225 130-325 (349)
140 PRK09856 fructoselysine 3-epim 45.1 94 0.002 26.2 7.0 76 176-252 49-145 (275)
141 PRK03031 rnpA ribonuclease P; 44.8 1.2E+02 0.0027 22.5 6.8 65 84-163 47-114 (122)
142 COG0042 tRNA-dihydrouridine sy 44.5 2.3E+02 0.0049 25.1 12.1 129 37-187 76-221 (323)
143 cd01976 Nitrogenase_MoFe_alpha 44.4 2.6E+02 0.0055 25.7 13.6 167 62-251 79-271 (421)
144 cd07939 DRE_TIM_NifV Streptomy 44.2 55 0.0012 27.8 5.3 36 29-64 128-163 (259)
145 TIGR00737 nifR3_yhdG putative 43.9 2.2E+02 0.0048 24.9 12.9 127 37-187 72-215 (319)
146 PF05690 ThiG: Thiazole biosyn 43.9 2E+02 0.0044 24.4 13.6 170 24-225 8-186 (247)
147 cd01980 Chlide_reductase_Y Chl 43.5 2.6E+02 0.0056 25.6 13.5 161 62-253 71-256 (416)
148 PRK04175 rpl7ae 50S ribosomal 43.5 1E+02 0.0022 23.1 6.1 64 151-220 16-79 (122)
149 PF01248 Ribosomal_L7Ae: Ribos 43.3 83 0.0018 21.9 5.4 63 153-221 3-65 (95)
150 cd02932 OYE_YqiM_FMN Old yello 43.3 2.3E+02 0.0051 24.9 13.1 91 85-189 219-315 (336)
151 cd03324 rTSbeta_L-fuconate_deh 43.1 2.7E+02 0.0058 25.6 15.7 148 38-221 196-352 (415)
152 TIGR01502 B_methylAsp_ase meth 43.1 2.7E+02 0.0058 25.6 17.4 164 38-223 178-357 (408)
153 PF13378 MR_MLE_C: Enolase C-t 43.0 53 0.0011 23.6 4.4 49 172-222 3-54 (111)
154 PF10668 Phage_terminase: Phag 42.8 13 0.00029 24.2 1.0 17 239-255 23-39 (60)
155 cd01971 Nitrogenase_VnfN_like 42.7 2.7E+02 0.0059 25.5 13.2 162 62-252 67-262 (427)
156 cd00377 ICL_PEPM Members of th 42.7 2.1E+02 0.0045 24.1 16.7 147 56-223 73-228 (243)
157 PRK07114 keto-hydroxyglutarate 42.5 1.5E+02 0.0033 24.7 7.5 63 150-219 53-117 (222)
158 COG4626 Phage terminase-like p 42.4 1.1E+02 0.0023 29.3 7.2 76 148-223 410-485 (546)
159 TIGR02082 metH 5-methyltetrahy 42.2 2.9E+02 0.0062 29.3 10.9 123 114-256 379-507 (1178)
160 PF01904 DUF72: Protein of unk 42.0 2E+02 0.0044 23.9 8.5 67 54-129 19-95 (230)
161 cd07940 DRE_TIM_IPMS 2-isoprop 41.4 1.5E+02 0.0032 25.3 7.6 50 27-76 130-181 (268)
162 TIGR02329 propionate_PrpR prop 41.4 1.8E+02 0.0039 27.7 8.8 68 150-220 83-151 (526)
163 COG2861 Uncharacterized protei 41.2 88 0.0019 26.5 5.8 52 121-175 78-129 (250)
164 PRK09490 metH B12-dependent me 41.2 3.9E+02 0.0084 28.5 11.6 88 168-256 433-523 (1229)
165 cd02930 DCR_FMN 2,4-dienoyl-Co 40.8 2.6E+02 0.0057 24.8 13.6 129 44-189 141-301 (353)
166 cd04731 HisF The cyclase subun 40.7 2.1E+02 0.0046 23.7 11.3 47 22-76 70-117 (243)
167 COG4992 ArgD Ornithine/acetylo 40.6 1.6E+02 0.0035 27.0 7.8 163 51-250 39-219 (404)
168 PRK10528 multifunctional acyl- 40.5 1.5E+02 0.0033 23.5 7.2 91 160-252 40-145 (191)
169 PRK09875 putative hydrolase; P 40.4 2.5E+02 0.0054 24.5 16.3 39 37-75 31-72 (292)
170 COG4943 Predicted signal trans 40.3 3.3E+02 0.0071 25.8 10.1 154 66-247 341-516 (524)
171 TIGR01212 radical SAM protein, 40.0 2.5E+02 0.0055 24.4 9.2 62 150-223 122-185 (302)
172 PF01964 ThiC: ThiC family; I 39.9 18 0.0004 32.9 1.7 78 37-128 73-161 (420)
173 cd03314 MAL Methylaspartate am 39.8 2.9E+02 0.0062 25.0 10.0 68 153-222 244-320 (369)
174 PF01175 Urocanase: Urocanase; 39.8 1E+02 0.0023 29.1 6.6 124 42-198 104-258 (546)
175 PRK05283 deoxyribose-phosphate 39.6 2.4E+02 0.0053 24.1 8.4 87 24-121 133-227 (257)
176 PF01113 DapB_N: Dihydrodipico 39.4 85 0.0018 23.3 5.2 44 150-193 77-120 (124)
177 cd04734 OYE_like_3_FMN Old yel 39.4 2.8E+02 0.006 24.7 12.9 36 154-189 274-310 (343)
178 PRK05660 HemN family oxidoredu 39.1 2.9E+02 0.0063 24.9 10.0 74 95-177 167-244 (378)
179 PRK02083 imidazole glycerol ph 39.1 2.3E+02 0.005 23.7 14.0 64 154-217 186-251 (253)
180 cd04740 DHOD_1B_like Dihydroor 38.4 2.6E+02 0.0056 24.0 14.5 163 37-215 99-286 (296)
181 PRK12311 rpsB 30S ribosomal pr 37.9 2.9E+02 0.0063 24.6 8.9 19 203-221 164-182 (326)
182 TIGR01761 thiaz-red thiazoliny 37.9 2.5E+02 0.0055 25.1 8.7 83 159-251 20-117 (343)
183 TIGR01927 menC_gamma/gm+ o-suc 37.3 1.9E+02 0.0042 25.2 7.8 69 155-225 196-268 (307)
184 TIGR00126 deoC deoxyribose-pho 37.2 2.4E+02 0.0051 23.3 7.8 80 28-119 123-205 (211)
185 TIGR01282 nifD nitrogenase mol 36.4 3.6E+02 0.0078 25.2 12.3 162 62-250 112-305 (466)
186 KOG1549 Cysteine desulfurase N 36.3 3.5E+02 0.0077 25.0 9.7 74 152-225 143-222 (428)
187 cd00537 MTHFR Methylenetetrahy 36.2 2.7E+02 0.0059 23.7 14.0 182 44-253 18-216 (274)
188 PRK13561 putative diguanylate 36.2 4E+02 0.0088 25.7 11.8 117 88-221 486-611 (651)
189 PRK04390 rnpA ribonuclease P; 36.0 1.8E+02 0.0039 21.6 7.0 64 84-162 44-109 (120)
190 COG2874 FlaH Predicted ATPases 35.9 2.7E+02 0.0058 23.5 10.9 156 15-187 19-183 (235)
191 PLN02775 Probable dihydrodipic 35.7 2.7E+02 0.0058 24.3 8.2 71 108-199 68-138 (286)
192 COG1795 Formaldehyde-activatin 35.5 63 0.0014 25.2 3.8 48 65-113 83-143 (170)
193 KOG0173 20S proteasome, regula 35.5 27 0.00059 29.6 2.0 20 36-55 182-201 (271)
194 TIGR00742 yjbN tRNA dihydrouri 35.4 3.1E+02 0.0068 24.2 11.9 133 37-184 64-215 (318)
195 cd01968 Nitrogenase_NifE_I Nit 35.4 3.4E+02 0.0075 24.6 13.5 166 58-251 63-257 (410)
196 COG0621 MiaB 2-methylthioadeni 35.4 1.2E+02 0.0026 28.2 6.3 81 145-225 170-264 (437)
197 cd08568 GDPD_TmGDE_like Glycer 35.3 2.5E+02 0.0054 23.0 8.0 64 158-221 110-201 (226)
198 COG1242 Predicted Fe-S oxidore 35.2 3.1E+02 0.0067 24.0 9.1 94 100-225 98-192 (312)
199 cd08556 GDPD Glycerophosphodie 35.1 2.1E+02 0.0046 22.2 14.1 24 38-61 11-34 (189)
200 cd03466 Nitrogenase_NifN_2 Nit 35.1 2.9E+02 0.0062 25.4 8.9 113 62-190 65-184 (429)
201 PRK14459 ribosomal RNA large s 35.1 3.2E+02 0.0069 24.8 8.9 99 122-225 241-359 (373)
202 PF14871 GHL6: Hypothetical gl 35.0 40 0.00087 25.6 2.8 21 204-224 47-67 (132)
203 PF01487 DHquinase_I: Type I 3 34.9 2.6E+02 0.0055 23.0 10.9 80 37-124 72-151 (224)
204 cd00316 Oxidoreductase_nitroge 34.8 3.3E+02 0.0072 24.3 12.0 158 62-249 61-250 (399)
205 cd00405 PRAI Phosphoribosylant 34.8 2.4E+02 0.0053 22.7 11.4 40 120-179 74-113 (203)
206 PRK07328 histidinol-phosphatas 34.6 2.9E+02 0.0062 23.5 10.1 139 105-253 94-255 (269)
207 PRK15440 L-rhamnonate dehydrat 34.4 1.7E+02 0.0037 26.7 7.2 67 152-220 246-318 (394)
208 PRK14455 ribosomal RNA large s 34.3 3.1E+02 0.0068 24.6 8.8 77 149-225 244-337 (356)
209 COG1104 NifS Cysteine sulfinat 34.3 1.3E+02 0.0028 27.5 6.2 73 150-223 101-180 (386)
210 COG0276 HemH Protoheme ferro-l 34.2 3.4E+02 0.0073 24.1 11.8 51 101-164 206-256 (320)
211 PRK09454 ugpQ cytoplasmic glyc 34.1 2.8E+02 0.0061 23.2 15.5 59 163-221 139-216 (249)
212 TIGR00262 trpA tryptophan synt 34.1 2.8E+02 0.0061 23.6 8.1 73 149-223 70-150 (256)
213 TIGR01060 eno phosphopyruvate 34.1 3.8E+02 0.0082 24.7 10.8 78 120-219 278-362 (425)
214 COG1358 RPL8A Ribosomal protei 34.0 94 0.002 23.1 4.5 66 150-221 12-77 (116)
215 PF03599 CdhD: CO dehydrogenas 33.9 3.1E+02 0.0068 25.0 8.6 86 119-225 69-155 (386)
216 PRK11815 tRNA-dihydrouridine s 33.9 3.4E+02 0.0073 24.1 9.0 134 37-185 74-226 (333)
217 PRK02842 light-independent pro 33.8 3.8E+02 0.0082 24.6 12.0 162 63-253 78-264 (427)
218 cd00885 cinA Competence-damage 33.7 1.7E+02 0.0037 23.2 6.3 66 40-112 18-84 (170)
219 KOG0259 Tyrosine aminotransfer 33.6 3.8E+02 0.0083 24.6 12.3 51 37-94 78-135 (447)
220 cd03318 MLE Muconate Lactonizi 33.5 3.5E+02 0.0075 24.1 14.2 69 153-223 227-299 (365)
221 COG2109 BtuR ATP:corrinoid ade 33.3 2.7E+02 0.0058 22.8 7.3 116 39-170 42-162 (198)
222 COG2185 Sbm Methylmalonyl-CoA 33.1 1.7E+02 0.0036 22.7 5.9 75 168-253 19-95 (143)
223 COG3215 PilZ Tfp pilus assembl 33.0 1E+02 0.0022 22.5 4.3 69 38-114 18-106 (117)
224 cd03317 NAAAR N-acylamino acid 32.8 3.5E+02 0.0076 23.9 15.2 146 40-223 139-288 (354)
225 PRK07714 hypothetical protein; 32.8 1.8E+02 0.004 20.7 6.6 64 150-220 3-66 (100)
226 COG2185 Sbm Methylmalonyl-CoA 32.6 2.4E+02 0.0051 21.9 11.6 109 39-184 25-135 (143)
227 PRK14478 nitrogenase molybdenu 32.6 4.2E+02 0.0091 24.8 12.8 159 62-248 100-287 (475)
228 PTZ00106 60S ribosomal protein 32.6 1.6E+02 0.0035 21.5 5.5 63 151-220 11-73 (108)
229 TIGR01286 nifK nitrogenase mol 32.5 4.4E+02 0.0096 25.0 12.0 117 60-192 121-252 (515)
230 TIGR02660 nifV_homocitr homoci 32.4 3.7E+02 0.008 24.1 10.7 93 104-219 24-131 (365)
231 COG0800 Eda 2-keto-3-deoxy-6-p 32.4 1.7E+02 0.0037 24.2 6.2 60 150-219 51-111 (211)
232 TIGR01283 nifE nitrogenase mol 32.3 4.1E+02 0.0089 24.6 13.1 160 62-249 102-294 (456)
233 cd03329 MR_like_4 Mandelate ra 32.2 3.7E+02 0.008 24.0 15.5 147 38-221 143-299 (368)
234 TIGR00676 fadh2 5,10-methylene 32.1 3.2E+02 0.007 23.3 13.9 155 40-217 15-186 (272)
235 TIGR03126 one_C_fae formaldehy 32.0 60 0.0013 25.5 3.3 51 63-114 78-142 (160)
236 PRK14465 ribosomal RNA large s 32.0 3.8E+02 0.0081 24.0 9.4 99 122-225 215-329 (342)
237 TIGR00612 ispG_gcpE 1-hydroxy- 32.0 3.8E+02 0.0082 24.0 10.4 69 151-219 58-126 (346)
238 TIGR03822 AblA_like_2 lysine-2 32.0 3.6E+02 0.0077 23.7 12.2 98 150-253 152-262 (321)
239 PRK14464 ribosomal RNA large s 31.9 3.2E+02 0.0069 24.5 8.3 77 149-225 224-317 (344)
240 PRK06740 histidinol-phosphatas 31.7 3.7E+02 0.008 23.8 12.3 138 106-253 156-318 (331)
241 cd03328 MR_like_3 Mandelate ra 31.6 3.7E+02 0.0081 23.9 16.2 148 38-221 138-293 (352)
242 PRK01492 rnpA ribonuclease P; 31.6 2.2E+02 0.0047 21.1 7.0 62 85-161 47-114 (118)
243 PRK04820 rnpA ribonuclease P; 31.4 2.5E+02 0.0054 21.8 7.1 65 84-163 48-114 (145)
244 COG4130 Predicted sugar epimer 31.4 2.6E+02 0.0057 23.5 7.0 77 174-251 49-137 (272)
245 cd00945 Aldolase_Class_I Class 31.4 2.3E+02 0.005 22.1 6.9 78 39-121 64-147 (201)
246 TIGR03249 KdgD 5-dehydro-4-deo 31.4 3.4E+02 0.0075 23.4 12.4 124 98-248 22-155 (296)
247 PRK07003 DNA polymerase III su 31.3 2.4E+02 0.0052 28.5 7.9 92 101-216 101-197 (830)
248 cd07945 DRE_TIM_CMS Leptospira 31.1 2.3E+02 0.0051 24.4 7.2 40 37-76 144-185 (280)
249 PLN02321 2-isopropylmalate syn 31.1 5.2E+02 0.011 25.4 10.3 93 26-126 226-322 (632)
250 PF00388 PI-PLC-X: Phosphatidy 31.1 38 0.00083 25.9 2.1 20 42-61 28-47 (146)
251 PRK09413 IS2 repressor TnpA; R 31.0 1E+02 0.0023 22.8 4.4 40 37-76 13-53 (121)
252 COG3454 Metal-dependent hydrol 30.7 35 0.00077 30.3 2.0 70 150-220 141-229 (377)
253 PRK14463 ribosomal RNA large s 30.7 3.7E+02 0.0079 24.1 8.6 77 149-225 232-325 (349)
254 cd00886 MogA_MoaB MogA_MoaB fa 30.7 2.5E+02 0.0054 21.6 7.1 51 40-94 19-70 (152)
255 PF05990 DUF900: Alpha/beta hy 30.5 2.2E+02 0.0047 23.7 6.8 86 84-175 16-101 (233)
256 PRK00979 tetrahydromethanopter 30.5 2.9E+02 0.0062 24.4 7.5 95 152-251 82-190 (308)
257 TIGR01430 aden_deam adenosine 30.4 3.7E+02 0.0079 23.4 13.7 152 42-219 74-238 (324)
258 PRK08084 DNA replication initi 30.1 1.2E+02 0.0025 25.3 5.1 48 120-179 98-145 (235)
259 TIGR01304 IMP_DH_rel_2 IMP deh 30.1 3.5E+02 0.0077 24.5 8.4 69 151-219 119-193 (369)
260 COG4555 NatA ABC-type Na+ tran 30.0 1.4E+02 0.0031 24.9 5.3 34 149-184 168-201 (245)
261 PRK02301 putative deoxyhypusin 30.0 3.9E+02 0.0086 23.6 9.6 49 39-94 42-94 (316)
262 TIGR02082 metH 5-methyltetrahy 29.9 5.9E+02 0.013 27.1 10.9 136 37-186 141-312 (1178)
263 PF01118 Semialdhyde_dh: Semia 29.9 83 0.0018 23.1 3.7 28 37-64 74-101 (121)
264 COG0289 DapB Dihydrodipicolina 29.8 1.2E+02 0.0026 26.1 5.0 50 150-199 79-128 (266)
265 COG4464 CapC Capsular polysacc 29.7 3.4E+02 0.0074 22.8 7.4 180 37-249 17-217 (254)
266 COG1168 MalY Bifunctional PLP- 29.7 1.2E+02 0.0027 27.5 5.2 146 37-221 38-198 (388)
267 PRK12323 DNA polymerase III su 29.6 3E+02 0.0065 27.2 8.2 68 101-186 106-175 (700)
268 cd00954 NAL N-Acetylneuraminic 29.4 3.7E+02 0.0079 23.1 12.8 125 98-245 17-153 (288)
269 PRK00499 rnpA ribonuclease P; 29.4 2.3E+02 0.0049 20.7 6.8 64 84-163 38-104 (114)
270 PRK10076 pyruvate formate lyas 29.3 3.3E+02 0.0071 22.5 11.7 27 37-63 51-78 (213)
271 PRK00994 F420-dependent methyl 29.1 3.6E+02 0.0079 23.0 8.9 61 66-135 16-76 (277)
272 PRK00366 ispG 4-hydroxy-3-meth 29.0 4.3E+02 0.0094 23.8 10.5 69 150-218 65-134 (360)
273 PRK15452 putative protease; Pr 29.0 4.8E+02 0.01 24.3 13.9 77 43-128 13-98 (443)
274 cd03770 SR_TndX_transposase Se 29.0 1.9E+02 0.0041 21.8 5.7 52 105-171 54-105 (140)
275 TIGR00973 leuA_bact 2-isopropy 29.0 5E+02 0.011 24.5 10.3 134 27-184 133-268 (494)
276 PF01791 DeoC: DeoC/LacD famil 28.8 3.4E+02 0.0073 22.5 7.8 76 41-127 20-100 (236)
277 COG3737 Uncharacterized conser 28.7 1.1E+02 0.0023 23.0 3.9 49 175-223 56-105 (127)
278 TIGR01285 nifN nitrogenase mol 28.5 4.7E+02 0.01 24.1 12.2 113 62-191 72-198 (432)
279 COG0820 Predicted Fe-S-cluster 28.5 3.9E+02 0.0084 24.1 8.1 97 123-225 216-330 (349)
280 PF08714 Fae: Formaldehyde-act 28.5 70 0.0015 25.2 3.1 51 63-114 76-140 (159)
281 PRK11858 aksA trans-homoaconit 28.3 1.3E+02 0.0027 27.3 5.3 29 148-184 231-260 (378)
282 PRK11613 folP dihydropteroate 28.2 4E+02 0.0086 23.1 11.2 65 152-222 77-141 (282)
283 cd07948 DRE_TIM_HCS Saccharomy 28.1 3.8E+02 0.0082 22.8 8.9 94 104-220 23-131 (262)
284 PF09012 FeoC: FeoC like trans 28.0 94 0.002 20.4 3.4 26 149-174 27-52 (69)
285 TIGR00036 dapB dihydrodipicoli 28.0 2.2E+02 0.0049 24.2 6.5 50 150-199 78-129 (266)
286 COG1131 CcmA ABC-type multidru 27.7 1.3E+02 0.0028 26.1 5.1 67 102-184 139-205 (293)
287 PF13380 CoA_binding_2: CoA bi 27.5 2.5E+02 0.0054 20.5 6.9 20 201-220 89-108 (116)
288 COG4359 Uncharacterized conser 27.4 98 0.0021 25.3 3.8 35 176-221 62-96 (220)
289 PRK13347 coproporphyrinogen II 27.4 5E+02 0.011 24.0 11.2 123 98-224 32-172 (453)
290 PRK02412 aroD 3-dehydroquinate 27.3 3.8E+02 0.0083 22.6 16.7 175 13-221 7-204 (253)
291 COG1448 TyrB Aspartate/tyrosin 27.2 2.9E+02 0.0063 25.2 7.1 96 56-169 97-210 (396)
292 PHA02820 phospholipase-D-like 27.2 5E+02 0.011 23.9 10.2 43 85-128 231-281 (424)
293 COG1801 Uncharacterized conser 26.9 4.1E+02 0.0088 22.8 10.5 98 25-131 3-115 (263)
294 KOG0023 Alcohol dehydrogenase, 26.8 3.8E+02 0.0083 24.0 7.6 149 9-217 171-324 (360)
295 PRK04820 rnpA ribonuclease P; 26.6 3E+02 0.0065 21.3 6.4 32 86-117 86-117 (145)
296 PRK08247 cystathionine gamma-s 26.6 4.2E+02 0.0091 23.6 8.3 59 166-225 116-177 (366)
297 PF02679 ComA: (2R)-phospho-3- 26.6 3.3E+02 0.0072 23.1 7.1 79 39-128 83-169 (244)
298 PF00578 AhpC-TSA: AhpC/TSA fa 26.5 2.4E+02 0.0052 20.0 6.7 39 152-190 43-84 (124)
299 PF05049 IIGP: Interferon-indu 26.5 1.5E+02 0.0032 27.0 5.3 59 65-130 129-201 (376)
300 COG0352 ThiE Thiamine monophos 26.4 3.7E+02 0.0081 22.2 7.5 65 155-223 95-167 (211)
301 COG3033 TnaA Tryptophanase [Am 26.1 1.4E+02 0.0031 27.1 4.9 49 173-221 168-226 (471)
302 cd03320 OSBS o-Succinylbenzoat 26.1 3.9E+02 0.0085 22.5 7.7 69 153-224 166-237 (263)
303 PF00762 Ferrochelatase: Ferro 26.1 4.6E+02 0.0099 23.1 10.3 155 37-224 129-298 (316)
304 COG1797 CobB Cobyrinic acid a, 26.0 5.4E+02 0.012 24.0 9.6 67 150-225 200-282 (451)
305 COG0135 TrpF Phosphoribosylant 25.9 1.3E+02 0.0028 24.9 4.5 45 108-175 67-111 (208)
306 PF06080 DUF938: Protein of un 25.9 95 0.0021 25.6 3.6 64 192-255 109-190 (204)
307 TIGR03471 HpnJ hopanoid biosyn 25.8 5.4E+02 0.012 23.9 13.4 45 204-253 326-370 (472)
308 KOG0059 Lipid exporter ABCA1 a 25.7 2.4E+02 0.0052 28.7 7.2 54 119-187 716-769 (885)
309 PRK14456 ribosomal RNA large s 25.5 5.1E+02 0.011 23.4 9.1 100 122-225 237-353 (368)
310 TIGR02660 nifV_homocitr homoci 25.5 3.2E+02 0.007 24.5 7.4 47 29-75 131-179 (365)
311 smart00148 PLCXc Phospholipase 25.5 3E+02 0.0065 20.8 6.6 21 40-60 28-48 (135)
312 TIGR01921 DAP-DH diaminopimela 25.4 2.6E+02 0.0055 24.9 6.5 70 43-119 74-143 (324)
313 PRK01313 rnpA ribonuclease P; 25.3 3E+02 0.0066 20.8 7.1 63 84-162 47-113 (129)
314 COG1064 AdhP Zn-dependent alco 25.3 5E+02 0.011 23.3 8.4 149 8-219 155-308 (339)
315 COG0626 MetC Cystathionine bet 25.2 5.1E+02 0.011 23.7 8.5 79 151-230 113-194 (396)
316 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.2 3.3E+02 0.0072 23.3 7.1 91 21-122 131-223 (275)
317 PRK00077 eno enolase; Provisio 25.1 5.4E+02 0.012 23.7 15.0 121 68-219 221-361 (425)
318 PRK02714 O-succinylbenzoate sy 25.0 4.7E+02 0.01 22.9 15.6 71 153-225 205-276 (320)
319 PRK15424 propionate catabolism 24.6 2.8E+02 0.006 26.6 7.0 71 150-223 93-164 (538)
320 TIGR01210 conserved hypothetic 24.6 4.8E+02 0.01 22.8 10.0 59 155-224 118-178 (313)
321 PRK09061 D-glutamate deacylase 24.6 6E+02 0.013 24.0 12.5 112 42-175 171-286 (509)
322 TIGR02666 moaA molybdenum cofa 24.4 4.8E+02 0.01 22.8 18.0 108 37-165 43-153 (334)
323 smart00857 Resolvase Resolvase 24.4 2.4E+02 0.0051 21.1 5.6 51 105-171 51-101 (148)
324 PRK14476 nitrogenase molybdenu 24.4 5.8E+02 0.013 23.7 13.4 113 61-190 72-198 (455)
325 PF00155 Aminotran_1_2: Aminot 24.4 4.7E+02 0.01 22.7 13.0 151 41-224 19-191 (363)
326 cd02803 OYE_like_FMN_family Ol 24.3 4.7E+02 0.01 22.7 12.1 94 86-189 207-306 (327)
327 PF15632 ATPgrasp_Ter: ATP-gra 24.3 87 0.0019 27.9 3.4 63 151-219 9-71 (329)
328 PRK10206 putative oxidoreducta 24.3 1.6E+02 0.0034 26.2 5.1 16 204-219 105-120 (344)
329 TIGR02080 O_succ_thio_ly O-suc 24.3 5.3E+02 0.011 23.2 10.4 72 152-224 102-176 (382)
330 cd05560 Xcc1710_like Xcc1710_l 24.2 2.8E+02 0.0062 20.1 5.7 51 171-222 37-87 (109)
331 PF00701 DHDPS: Dihydrodipicol 24.2 4.5E+02 0.0098 22.4 9.2 107 98-221 18-134 (289)
332 COG1031 Uncharacterized Fe-S o 24.2 5.3E+02 0.011 24.4 8.3 107 37-179 215-326 (560)
333 PRK09875 putative hydrolase; P 24.1 4.8E+02 0.01 22.7 9.7 128 22-187 52-204 (292)
334 cd00248 Mth938-like Mth938-lik 24.1 2.9E+02 0.0062 20.1 5.8 50 171-222 36-87 (109)
335 PRK14469 ribosomal RNA large s 24.0 5.1E+02 0.011 23.0 8.8 76 149-224 233-324 (343)
336 KOG3206 Alpha-tubulin folding 23.7 40 0.00087 27.8 1.0 13 52-64 199-211 (234)
337 cd02931 ER_like_FMN Enoate red 23.7 5.5E+02 0.012 23.2 13.0 34 156-189 296-330 (382)
338 PRK13352 thiamine biosynthesis 23.7 1.3E+02 0.0029 27.6 4.4 88 152-253 122-223 (431)
339 COG3607 Predicted lactoylgluta 23.6 86 0.0019 23.8 2.7 27 37-63 80-106 (133)
340 PRK08227 autoinducer 2 aldolas 23.6 1.2E+02 0.0026 26.0 4.0 44 204-251 130-173 (264)
341 COG1082 IolE Sugar phosphate i 23.5 3.9E+02 0.0084 22.2 7.2 97 155-252 19-142 (274)
342 PF00154 RecA: recA bacterial 23.4 1.7E+02 0.0037 25.9 5.0 44 110-173 96-139 (322)
343 PRK05799 coproporphyrinogen II 23.3 5.1E+02 0.011 23.1 8.3 125 43-176 99-239 (374)
344 COG0329 DapA Dihydrodipicolina 23.2 5E+02 0.011 22.6 11.7 124 99-246 22-156 (299)
345 cd08606 GDPD_YPL110cp_fungi Gl 23.1 3.2E+02 0.0069 23.3 6.7 30 157-186 156-185 (286)
346 TIGR03821 AblA_like_1 lysine-2 23.1 5.2E+02 0.011 22.7 8.1 96 153-252 161-267 (321)
347 cd00951 KDGDH 5-dehydro-4-deox 23.0 4.9E+02 0.011 22.4 12.2 124 98-248 17-150 (289)
348 PRK14463 ribosomal RNA large s 23.0 5.5E+02 0.012 23.0 13.7 47 204-252 269-317 (349)
349 PRK05628 coproporphyrinogen II 23.0 5.5E+02 0.012 22.9 12.2 77 95-176 168-248 (375)
350 PF06971 Put_DNA-bind_N: Putat 22.9 39 0.00084 21.1 0.6 14 242-255 32-45 (50)
351 PF08013 Tagatose_6_P_K: Tagat 22.9 2E+02 0.0044 26.5 5.4 64 154-217 4-82 (424)
352 PF11181 YflT: Heat induced st 22.9 1.4E+02 0.0031 21.3 3.8 29 63-93 6-34 (103)
353 TIGR00618 sbcc exonuclease Sbc 22.9 1.5E+02 0.0033 30.7 5.3 49 119-182 978-1026(1042)
354 KOG0996 Structural maintenance 22.6 60 0.0013 33.7 2.2 70 150-225 599-676 (1293)
355 PRK03995 hypothetical protein; 22.6 4.1E+02 0.0088 22.9 7.0 80 22-119 180-264 (267)
356 cd00338 Ser_Recombinase Serine 22.6 1.9E+02 0.0041 21.2 4.6 53 104-172 50-102 (137)
357 PRK00396 rnpA ribonuclease P; 22.5 3.5E+02 0.0075 20.5 6.8 64 84-162 46-111 (130)
358 PF01476 LysM: LysM domain; I 22.3 45 0.00098 19.3 0.9 19 237-255 5-23 (44)
359 PTZ00081 enolase; Provisional 22.3 6.4E+02 0.014 23.4 16.7 96 99-221 281-383 (439)
360 TIGR02015 BchY chlorophyllide 22.3 6.2E+02 0.013 23.3 12.3 162 60-252 65-261 (422)
361 KOG4175 Tryptophan synthase al 22.3 4.6E+02 0.01 21.8 9.5 68 148-218 77-152 (268)
362 TIGR02026 BchE magnesium-proto 22.3 6.6E+02 0.014 23.6 12.0 161 37-215 222-392 (497)
363 cd00959 DeoC 2-deoxyribose-5-p 22.0 3.3E+02 0.0071 22.0 6.2 72 37-117 128-202 (203)
364 cd08605 GDPD_GDE5_like_1_plant 21.8 3.2E+02 0.007 23.2 6.4 27 160-186 164-190 (282)
365 PRK01732 rnpA ribonuclease P; 21.7 3.3E+02 0.0072 20.0 6.6 64 84-162 45-110 (114)
366 cd04501 SGNH_hydrolase_like_4 21.6 3.8E+02 0.0083 20.6 7.3 91 163-253 31-142 (183)
367 TIGR02090 LEU1_arch isopropylm 21.6 5.9E+02 0.013 22.8 8.8 41 36-76 137-179 (363)
368 PRK10799 metal-binding protein 21.5 2.1E+02 0.0046 24.1 5.1 22 46-68 200-221 (247)
369 PRK05718 keto-hydroxyglutarate 21.5 3.4E+02 0.0074 22.4 6.2 58 154-218 54-112 (212)
370 COG0419 SbcC ATPase involved i 21.4 1.9E+02 0.0041 29.5 5.5 60 105-179 825-886 (908)
371 cd08612 GDPD_GDE4 Glycerophosp 21.4 5.3E+02 0.012 22.3 7.8 24 37-60 38-61 (300)
372 PLN03228 methylthioalkylmalate 21.3 7.1E+02 0.015 23.6 9.7 38 27-64 226-263 (503)
373 PF11242 DUF2774: Protein of u 21.3 49 0.0011 21.7 0.9 17 240-256 15-31 (63)
374 TIGR01163 rpe ribulose-phospha 21.2 4.3E+02 0.0093 21.0 9.2 59 155-216 46-106 (210)
375 PRK06582 coproporphyrinogen II 21.1 4.9E+02 0.011 23.6 7.7 74 95-176 170-250 (390)
376 PRK00915 2-isopropylmalate syn 21.0 7.2E+02 0.016 23.6 10.4 131 28-183 137-270 (513)
377 cd03768 SR_ResInv Serine Recom 21.0 2.3E+02 0.005 20.5 4.7 47 105-169 42-88 (126)
378 PF09370 TIM-br_sig_trns: TIM- 20.9 1.4E+02 0.0031 25.7 3.8 58 150-220 94-156 (268)
379 TIGR02637 RhaS rhamnose ABC tr 20.9 4.1E+02 0.0088 22.4 6.9 18 39-56 67-84 (302)
380 PRK06852 aldolase; Validated 20.9 1.8E+02 0.0038 25.6 4.5 46 205-251 158-203 (304)
381 PRK11059 regulatory protein Cs 20.9 7.7E+02 0.017 23.8 9.7 114 87-220 483-609 (640)
382 KOG0258 Alanine aminotransfera 20.8 1.9E+02 0.0041 26.6 4.7 20 204-223 238-257 (475)
383 PF01402 RHH_1: Ribbon-helix-h 20.8 63 0.0014 18.3 1.2 18 238-255 11-28 (39)
384 COG2949 SanA Uncharacterized m 20.7 5E+02 0.011 21.7 8.7 74 150-223 78-182 (235)
385 PRK10605 N-ethylmaleimide redu 20.6 6.2E+02 0.013 22.7 11.5 22 168-189 295-316 (362)
386 PF13518 HTH_28: Helix-turn-he 20.6 58 0.0012 19.6 1.1 16 240-255 14-29 (52)
387 COG0145 HyuA N-methylhydantoin 20.5 4.9E+02 0.011 25.8 7.9 84 37-129 136-242 (674)
388 PRK09427 bifunctional indole-3 20.5 3.9E+02 0.0086 24.9 7.0 31 166-198 307-338 (454)
389 PRK10834 vancomycin high tempe 20.5 4.4E+02 0.0096 22.3 6.7 70 152-221 68-168 (239)
390 TIGR00126 deoC deoxyribose-pho 20.5 4.9E+02 0.011 21.4 9.2 136 37-201 15-159 (211)
391 PRK10558 alpha-dehydro-beta-de 20.5 2.6E+02 0.0055 23.8 5.4 67 157-224 10-79 (256)
392 COG0052 RpsB Ribosomal protein 20.4 5.4E+02 0.012 22.0 7.1 30 85-122 65-94 (252)
393 PF04218 CENP-B_N: CENP-B N-te 20.3 56 0.0012 20.4 1.0 18 239-256 23-40 (53)
394 PF00697 PRAI: N-(5'phosphorib 20.3 4.6E+02 0.01 21.1 7.3 83 110-218 13-96 (197)
395 TIGR02313 HpaI-NOT-DapA 2,4-di 20.2 5.7E+02 0.012 22.1 13.4 128 98-248 17-155 (294)
396 PF08671 SinI: Anti-repressor 20.2 1.2E+02 0.0026 16.8 2.2 16 40-55 3-18 (30)
397 TIGR01329 cysta_beta_ly_E cyst 20.1 6.3E+02 0.014 22.6 9.3 58 166-224 111-171 (378)
398 TIGR01544 HAD-SF-IE haloacid d 20.1 5.8E+02 0.012 22.1 7.9 81 148-251 81-161 (277)
399 PRK07283 hypothetical protein; 20.1 3.3E+02 0.0072 19.3 6.4 63 151-220 4-66 (98)
400 cd08572 GDPD_GDE5_like Glycero 20.0 5.7E+02 0.012 22.0 7.8 30 158-187 171-200 (293)
401 COG0108 RibB 3,4-dihydroxy-2-b 20.0 2.3E+02 0.0051 23.3 4.7 15 205-219 176-190 (203)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7e-58 Score=387.56 Aligned_cols=217 Identities=41% Similarity=0.717 Sum_probs=199.3
Q ss_pred CCceecCCCCCcCCccceeCCcCCCCChhH-HHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEE
Q 025159 12 IPDVPLKSSNRRMPVLGLGTAASPFSGSET-TKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFI 90 (257)
Q Consensus 12 m~~~~l~~~~~~vs~lglG~~~~~~~~~~~-~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i 90 (257)
+.+.+|++| .+||.||||||+++. ++ +.+.+..|++.|+|+||||..||||+.+|+++++. ++ +|+++||
T Consensus 3 ~~~~~l~~g-~~iP~iGlGt~~~~~---~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelFi 73 (280)
T COG0656 3 KTKVTLNNG-VEIPAIGLGTWQIGD---DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELFI 73 (280)
T ss_pred CceeecCCC-CcccCcceEeeecCC---chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeEE
Confidence 566788898 889999999999643 44 99999999999999999999999999999999995 77 8999999
Q ss_pred EeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEE
Q 025159 91 ASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (257)
Q Consensus 91 ~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (257)
+||+|..+.+++.+.+++++||++||+||+|+|+||||... . .....++|++|++++++|+||+||
T Consensus 74 ttKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~-------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 74 TTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K-------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred EeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c-------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 99999999999999999999999999999999999999653 1 011689999999999999999999
Q ss_pred ecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCC
Q 025159 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (257)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~ 250 (257)
||||+.++++++++...+.|++||++||+++++.++++||+++||.+++||||+. |.. ++..+.+.+||++||.
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~~-----l~~~~~l~~Ia~k~g~ 213 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GGK-----LLDNPVLAEIAKKYGK 213 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-ccc-----cccChHHHHHHHHhCC
Confidence 9999999999999999999999999999999998999999999999999999995 421 6788999999999999
Q ss_pred CcccccC
Q 025159 251 TVAQVLI 257 (257)
Q Consensus 251 s~~qval 257 (257)
||+||+|
T Consensus 214 t~AQv~L 220 (280)
T COG0656 214 TPAQVAL 220 (280)
T ss_pred CHHHHHH
Confidence 9999986
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.4e-57 Score=384.53 Aligned_cols=233 Identities=49% Similarity=0.789 Sum_probs=211.9
Q ss_pred ceecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEec
Q 025159 14 DVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 14 ~~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK 93 (257)
+.+|++| .+||.||||||+ .++.++.+++..|++.||||||||..|+||+.+|.+|++.++++.+ +|+++||+||
T Consensus 6 ~~~Ln~G-~~mP~iGlGTw~---~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTSK 80 (300)
T KOG1577|consen 6 TVKLNNG-FKMPIIGLGTWQ---SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITSK 80 (300)
T ss_pred eEeccCC-CccceeeeEecc---cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeeec
Confidence 7889999 999999999999 5789999999999999999999999999999999999999977766 9999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc---ccCCCCccHHHHHHHHHHHHHcCCeeEEE
Q 025159 94 LWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK---KEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (257)
Q Consensus 94 ~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (257)
+|+..+.++.++.++++||++||+||+|+|++|||....+ ..|.+ ...+...+..++|++||+++++|++|+||
T Consensus 81 lw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIG 157 (300)
T KOG1577|consen 81 LWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIG 157 (300)
T ss_pred cCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC---CCCcccccccccccchHHHHHHHHHHHHHcCCceEee
Confidence 9999889999999999999999999999999999987643 22222 12233456889999999999999999999
Q ss_pred ecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCC
Q 025159 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (257)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~ 250 (257)
||||+..++++++..+.++|.+||++++|+..+..+++||+++||.+.+||||+.++. +. .++.++.+.+||+|||+
T Consensus 158 VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~k 234 (300)
T KOG1577|consen 158 VSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNK 234 (300)
T ss_pred eecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999997443 22 67889999999999999
Q ss_pred CcccccC
Q 025159 251 TVAQVLI 257 (257)
Q Consensus 251 s~~qval 257 (257)
||+||+|
T Consensus 235 t~aQIlL 241 (300)
T KOG1577|consen 235 TPAQILL 241 (300)
T ss_pred CHHHHHH
Confidence 9999975
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.7e-50 Score=351.74 Aligned_cols=222 Identities=33% Similarity=0.475 Sum_probs=196.8
Q ss_pred CCceecCCCCCcCCccceeCCcCCC----CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCC
Q 025159 12 IPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKS 84 (257)
Q Consensus 12 m~~~~l~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~ 84 (257)
|.+++||++|++||+||||||.++. .+.+++.++|+.|+++|||+||||+.|| ||+++|++|+.. + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 7889999988999999999999986 2344566799999999999999999999 899999999976 3 3
Q ss_pred CCcEEEEeccCC----------CCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHH
Q 025159 85 RDELFIASKLWC----------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (257)
Q Consensus 85 R~~l~i~tK~~~----------~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
|++++|+||++. .+.+++.++++++.||+|||+||||+|++|||+...| .++++
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p----------------~~e~~ 138 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP----------------IEETL 138 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC----------------HHHHH
Confidence 899999999932 2358999999999999999999999999999987544 78999
Q ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc--HHHHHHHHHCCceEEEecCCCCCCCCCCC
Q 025159 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTIWGS 232 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~l~~~ 232 (257)
.+|.+|+++||||+||+||++++++.++.+.+ .++.++|.+||+++++ .+++++|+++||++++||||+. |+|+++
T Consensus 139 ~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk 216 (316)
T COG0667 139 EALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGK 216 (316)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCC
Confidence 99999999999999999999999999999987 6678999999999964 5699999999999999999998 999987
Q ss_pred CCc----------c------------ChHHHHHHHHHhCCCcccccC
Q 025159 233 NRV----------M------------ECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 233 ~~~----------~------------~~~~~~~ia~~~~~s~~qval 257 (257)
... . ....++++|+++|+||+|+||
T Consensus 217 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL 263 (316)
T COG0667 217 YLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVAL 263 (316)
T ss_pred cCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 543 0 014589999999999999986
No 4
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.8e-49 Score=342.25 Aligned_cols=230 Identities=29% Similarity=0.416 Sum_probs=205.2
Q ss_pred CCCCCCCCceecCCCCCcCCccceeCCcCC---C-CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHh
Q 025159 6 EMGSISIPDVPLKSSNRRMPVLGLGTAASP---F-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALS 78 (257)
Q Consensus 6 ~~~~~~m~~~~l~~~~~~vs~lglG~~~~~---~-~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~ 78 (257)
..+...|++++|+++|++||++|||+|.+. . .+.+++.+++..|+++|+|+||||+.|| ||..+|++|+++
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~-- 83 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR-- 83 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc--
Confidence 334556999999999999999999995432 2 6899999999999999999999999999 799999999998
Q ss_pred CCCCCCCCcEEEEeccCC-------CCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHH
Q 025159 79 TGIIKSRDELFIASKLWC-------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFK 151 (257)
Q Consensus 79 ~~~~~~R~~l~i~tK~~~-------~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~ 151 (257)
+. +|++++|+||++- ...+...+...++.|+++||++|||+||+||+|...| .+
T Consensus 84 -~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p----------------ie 144 (336)
T KOG1575|consen 84 -GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP----------------IE 144 (336)
T ss_pred -CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC----------------HH
Confidence 66 8999999999932 3456788999999999999999999999999988766 89
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCCC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGT 228 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~ 228 (257)
+++++|.+++++|||++||+|+++++++.++...++++++.+|++||++.++ .++++.|++.||++++||||+. |+
T Consensus 145 e~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~ 223 (336)
T KOG1575|consen 145 ETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GL 223 (336)
T ss_pred HHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ce
Confidence 9999999999999999999999999999999999999999999999999885 5699999999999999999998 99
Q ss_pred CCCCCCcc-----------------C----------hHHHHHHHHHhCCCcccccC
Q 025159 229 IWGSNRVM-----------------E----------CEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 229 l~~~~~~~-----------------~----------~~~~~~ia~~~~~s~~qval 257 (257)
|+++.... . -..+.++|+++|+|++|+||
T Consensus 224 Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlAL 279 (336)
T KOG1575|consen 224 LTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLAL 279 (336)
T ss_pred eccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99764310 0 14589999999999999986
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.2e-48 Score=342.24 Aligned_cols=222 Identities=28% Similarity=0.402 Sum_probs=191.3
Q ss_pred ceecCCCCCcCCccceeCCc-CCC-CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCcE
Q 025159 14 DVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (257)
Q Consensus 14 ~~~l~~~~~~vs~lglG~~~-~~~-~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~~l 88 (257)
+|+||++|++||+||||||. ++. .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. +. +|+++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~~ 75 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSSY 75 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--CcccE
Confidence 47889888999999999997 443 5788999999999999999999999998 799999999864 44 69999
Q ss_pred EEEeccCCC-------CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 89 FIASKLWCS-------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 89 ~i~tK~~~~-------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
+|+||++.. ..+++.+++++++||++||+||||+|++|||+...+ .+++|++|++|+
T Consensus 76 ~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~----------------~~e~~~aL~~l~ 139 (317)
T TIGR01293 76 VITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP----------------MEETVRAMTYVI 139 (317)
T ss_pred EEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC----------------HHHHHHHHHHHH
Confidence 999998321 357899999999999999999999999999965333 789999999999
Q ss_pred HcCCeeEEEecCCCHHHHHHHHHhCC----CCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCCCCCCCCC
Q 025159 162 NLGYTKAIGVSNFSCKKLGDILATAK----IPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWGSNR 234 (257)
Q Consensus 162 ~~G~ir~iGvs~~~~~~l~~~~~~~~----~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~ 234 (257)
++||||+||||||+++++.++...+. ++|.++|++||+++++ .+++++|+++||++++|+||++ |+|+++..
T Consensus 140 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~ 218 (317)
T TIGR01293 140 NQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYD 218 (317)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCC
Confidence 99999999999999999988765432 6788999999999874 3799999999999999999997 99986531
Q ss_pred cc-----------------------------ChHHHHHHHHHhCCCcccccC
Q 025159 235 VM-----------------------------ECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 235 ~~-----------------------------~~~~~~~ia~~~~~s~~qval 257 (257)
.. ..+.+.++|+++|+|++|+||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal 270 (317)
T TIGR01293 219 SGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAI 270 (317)
T ss_pred CCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 00 014689999999999999985
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.9e-48 Score=344.16 Aligned_cols=227 Identities=25% Similarity=0.386 Sum_probs=193.0
Q ss_pred CCCCceecCCCCCcCCccceeCCc-CCC-CChhHHHHHHHHHHHcCCceeeCCCCCC-----ChHHHHHHHHHHHhCCCC
Q 025159 10 ISIPDVPLKSSNRRMPVLGLGTAA-SPF-SGSETTKLAILEAMKLGYRHFDTATLYQ-----TEQPLGDAIAEALSTGII 82 (257)
Q Consensus 10 ~~m~~~~l~~~~~~vs~lglG~~~-~~~-~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----~e~~lg~~l~~~~~~~~~ 82 (257)
..|++++||++|++||+||||||+ ++. .+.+++.++|+.|++.|||+||||+.|| +|..+|++|++.. +.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~- 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA- 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC-
Confidence 449999999988999999999996 553 3557789999999999999999999998 6999999998631 11
Q ss_pred CCCCcEEEEeccC----CC----CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHH
Q 025159 83 KSRDELFIASKLW----CS----DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (257)
Q Consensus 83 ~~R~~l~i~tK~~----~~----~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
.|+++||+||++ +. ..+++.+++++++||++||+||||+|++|||+...+ .+++|
T Consensus 88 -~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~----------------~~e~~ 150 (346)
T PRK09912 88 -YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP----------------MEETA 150 (346)
T ss_pred -CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC----------------HHHHH
Confidence 599999999973 21 246889999999999999999999999999965333 78999
Q ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHH---hCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCCC
Q 025159 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILA---TAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGT 228 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~ 228 (257)
++|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++ |+
T Consensus 151 ~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~ 229 (346)
T PRK09912 151 SALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GL 229 (346)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-cc
Confidence 999999999999999999999999886654 3456788999999999873 4699999999999999999998 99
Q ss_pred CCCCCCc----------------------c------ChHHHHHHHHHhCCCcccccC
Q 025159 229 IWGSNRV----------------------M------ECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 229 l~~~~~~----------------------~------~~~~~~~ia~~~~~s~~qval 257 (257)
|+++... . ..+.+.++|+++|+|++|+||
T Consensus 230 Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL 286 (346)
T PRK09912 230 LTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMAL 286 (346)
T ss_pred ccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9864210 0 015788999999999999986
No 7
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.4e-48 Score=333.18 Aligned_cols=206 Identities=34% Similarity=0.647 Sum_probs=185.3
Q ss_pred cCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChh
Q 025159 23 RMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRE 102 (257)
Q Consensus 23 ~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~ 102 (257)
+||.||||||++ +.+++.++++.|++.|||+||||+.||+|..+|++|++. ++ +|+++||+||+|....+++
T Consensus 2 ~vs~lglGt~~~---~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~ 73 (267)
T PRK11172 2 SIPAFGLGTFRL---KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKD 73 (267)
T ss_pred CCCCEeeEcccc---ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHH
Confidence 599999999986 447899999999999999999999999999999999975 65 7999999999987777889
Q ss_pred hHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Q 025159 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 182 (257)
.+++++++||++||+||||+|++|||+... .....++|++|++++++||||+||||||+.++++++
T Consensus 74 ~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~--------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 74 KLIPSLKESLQKLRTDYVDLTLIHWPSPND--------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCCC--------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 999999999999999999999999985421 123678999999999999999999999999999999
Q ss_pred HHhCCC-CCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccccC
Q 025159 183 LATAKI-PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 183 ~~~~~~-~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qval 257 (257)
++.+.. +|.++|++||++.++.+++++|+++||++++|+||+. |.+. ..+.+.++|+++|+|++|+||
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval 208 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVIL 208 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHH
Confidence 887664 6889999999999888999999999999999999997 7543 347899999999999999985
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.3e-48 Score=342.03 Aligned_cols=238 Identities=27% Similarity=0.356 Sum_probs=194.7
Q ss_pred CCceecCCCCCcCCccceeCCcCCC-CChhHHHHHHHHHHHcCCceeeCCCCCC----------ChHHHHHHHHHHHhCC
Q 025159 12 IPDVPLKSSNRRMPVLGLGTAASPF-SGSETTKLAILEAMKLGYRHFDTATLYQ----------TEQPLGDAIAEALSTG 80 (257)
Q Consensus 12 m~~~~l~~~~~~vs~lglG~~~~~~-~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg----------~e~~lg~~l~~~~~~~ 80 (257)
|++++||++|++||+||||||.+|. .+.+++.++|+.|++.|||+||||+.|| +|..+|++|++. +
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~ 77 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G 77 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C
Confidence 6789999989999999999999985 5678999999999999999999999996 899999999864 3
Q ss_pred CCCCCCcEEEEeccCCC------------CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCC--CCCCCCCcccCCC
Q 025159 81 IIKSRDELFIASKLWCS------------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKP--GSYEFPIKKEDFL 146 (257)
Q Consensus 81 ~~~~R~~l~i~tK~~~~------------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~--~~~~~~~~~~~~~ 146 (257)
.|++++|+||++.. .++++.+++++++||++||+||||+|++|||+.... ++.... ..+...
T Consensus 78 ---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~-~~~~~~ 153 (346)
T PRK10625 78 ---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYS-WTDSAP 153 (346)
T ss_pred ---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccc-cccccC
Confidence 59999999998531 357899999999999999999999999999964211 000000 000001
Q ss_pred CccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhC---C-CCCceeccccCCCCCc--HHHHHHHHHCCceEEEe
Q 025159 147 PMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA---K-IPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAY 220 (257)
Q Consensus 147 ~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~-~~p~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~ 220 (257)
...+.++|++|++|+++||||+||+|||+.+++++++..+ . ..+.++|.+||++++. .+++++|+++||++++|
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~ 233 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAY 233 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEe
Confidence 2347899999999999999999999999999988876532 2 3567899999998764 57999999999999999
Q ss_pred cCCCCCCCCCCCCCc-----------cC-------------hHHHHHHHHHhCCCcccccC
Q 025159 221 APLGARGTIWGSNRV-----------ME-------------CEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 221 ~pl~~~G~l~~~~~~-----------~~-------------~~~~~~ia~~~~~s~~qval 257 (257)
+||+. |+|+++... .. .+.+.++|+++|+|++|+||
T Consensus 234 spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval 293 (346)
T PRK10625 234 SCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMAL 293 (346)
T ss_pred ccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99997 999864210 10 25788999999999999986
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1e-46 Score=325.17 Aligned_cols=214 Identities=38% Similarity=0.705 Sum_probs=190.6
Q ss_pred CceecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEe
Q 025159 13 PDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIAS 92 (257)
Q Consensus 13 ~~~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~t 92 (257)
++.+|.+| +.||.||||||++ +.+++.++++.|++.|+|+||||+.||+|+.+|++|++. ++ +|++++|+|
T Consensus 5 ~~~~l~~g-~~v~~lglG~~~~---~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~t 75 (275)
T PRK11565 5 TVIKLQDG-NVMPQLGLGVWQA---SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFITT 75 (275)
T ss_pred ceEEcCCC-CccCCcceECccC---CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEEE
Confidence 34667766 9999999999984 568899999999999999999999999999999999975 55 699999999
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec
Q 025159 93 KLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS 172 (257)
Q Consensus 93 K~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 172 (257)
|+|.. +++.+++++++||++||+||||+|++|+|+...+ ...++|++|++|+++|+||+||||
T Consensus 76 K~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 76 KLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID---------------HYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred EecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC---------------cHHHHHHHHHHHHHcCCeeEEeec
Confidence 99854 4689999999999999999999999999864211 257999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 173 NFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 173 ~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
||+++++++++..+.++|.++|++|+++.++.+++++|+++||++++|+||++ |. ......+.+.++|++||+|+
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~s~ 213 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGKTP 213 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCCCH
Confidence 99999999999888888999999999999888999999999999999999986 53 12335688999999999999
Q ss_pred ccccC
Q 025159 253 AQVLI 257 (257)
Q Consensus 253 ~qval 257 (257)
+|+||
T Consensus 214 aq~aL 218 (275)
T PRK11565 214 AQIVI 218 (275)
T ss_pred HHHHH
Confidence 99986
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.1e-46 Score=330.92 Aligned_cols=225 Identities=21% Similarity=0.309 Sum_probs=189.2
Q ss_pred ceecCCCCCcCCccceeCCcCCC----CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCC
Q 025159 14 DVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (257)
Q Consensus 14 ~~~l~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~ 86 (257)
+|+||++|++||.||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|++. +. .|+
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R~ 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PRE 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Ccc
Confidence 57889888999999999998863 5788999999999999999999999997 699999999975 44 699
Q ss_pred cEEEEeccCC----CCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH
Q 025159 87 ELFIASKLWC----SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (257)
Q Consensus 87 ~l~i~tK~~~----~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 162 (257)
++||+||++. .+++++.+++++++||++||+||||+|+||+|+...+ ....+++|++|++|++
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-------------~~~~~~~~~~l~~l~~ 142 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL-------------DQIVNETIPALQKLKE 142 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch-------------hhhHHHHHHHHHHHHH
Confidence 9999999964 2467899999999999999999999999999853211 1225689999999999
Q ss_pred cCCeeEEEecCCCHHHHHHHHHhCC---CCCceeccccCCCCCc-HHHHHHHHHCCceEEEecCCCCCCCCCCCCCcc--
Q 025159 163 LGYTKAIGVSNFSCKKLGDILATAK---IPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVM-- 236 (257)
Q Consensus 163 ~G~ir~iGvs~~~~~~l~~~~~~~~---~~p~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~-- 236 (257)
+||||+||+|||++++++.+.+... +....+|..|++.++. .+++++|+++||++++|+||++ |+|+++....
T Consensus 143 ~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~ 221 (314)
T PLN02587 143 SGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWH 221 (314)
T ss_pred CCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCC
Confidence 9999999999999999888776432 3445568888876653 5899999999999999999997 9998753111
Q ss_pred --------ChHHHHHHHHHhCCCcccccC
Q 025159 237 --------ECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 237 --------~~~~~~~ia~~~~~s~~qval 257 (257)
..+.++++|+++|+|++|+||
T Consensus 222 ~~~~~~~~~~~~l~~~a~~~~~s~aq~al 250 (314)
T PLN02587 222 PAPPELKSACAAAATHCKEKGKNISKLAL 250 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 023567899999999999986
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.9e-46 Score=323.90 Aligned_cols=222 Identities=40% Similarity=0.583 Sum_probs=198.0
Q ss_pred ceecCCCCCcCCccceeCCcCCC--CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCcE
Q 025159 14 DVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDEL 88 (257)
Q Consensus 14 ~~~l~~~~~~vs~lglG~~~~~~--~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~~l 88 (257)
+++|+++|++||+|||||+.++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|++. + .|+++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~~ 74 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREEV 74 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCcE
Confidence 47888777999999999999875 3678999999999999999999999998 899999999975 2 49999
Q ss_pred EEEeccCCCC-----CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc
Q 025159 89 FIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (257)
Q Consensus 89 ~i~tK~~~~~-----~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (257)
+|+||++... .+++.+++++++||++||++|||+|+||+|+...+ ...++|++|++++++
T Consensus 75 ~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~---------------~~~~~~~~l~~l~~~ 139 (285)
T cd06660 75 FIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP---------------DIEETLRALEELVKE 139 (285)
T ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC---------------CHHHHHHHHHHHHHc
Confidence 9999997654 57899999999999999999999999999965321 378999999999999
Q ss_pred CCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcH--HHHHHHHHCCceEEEecCCCCCCCCCCCCCccC----
Q 025159 164 GYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQN--KLREFCKAKDIQLAAYAPLGARGTIWGSNRVME---- 237 (257)
Q Consensus 164 G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~--~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~---- 237 (257)
|+||+||||||+++.++++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+++......
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~ 218 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPE 218 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCCh
Confidence 99999999999999999999988889999999999999864 599999999999999999997 98876544322
Q ss_pred ---hHHHHHHHHHhCCCcccccC
Q 025159 238 ---CEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 238 ---~~~~~~ia~~~~~s~~qval 257 (257)
...+..+|++++.|++|+||
T Consensus 219 ~~~~~~~~~~~~~~~~s~~q~al 241 (285)
T cd06660 219 GDLLEALKEIAEKHGVTPAQVAL 241 (285)
T ss_pred hhHHHHHHHHHHHhCCCHHHHHH
Confidence 36789999999999999985
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.5e-44 Score=312.98 Aligned_cols=211 Identities=36% Similarity=0.595 Sum_probs=183.0
Q ss_pred ccceeCCcCCC--CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCcEEEEecc-----C
Q 025159 26 VLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKL-----W 95 (257)
Q Consensus 26 ~lglG~~~~~~--~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~-----~ 95 (257)
+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 58999999974 8999999999999999999999999993 899999999983 44 89999999999 5
Q ss_pred CCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC
Q 025159 96 CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (257)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 175 (257)
....+++.+++++++||++||+||||+|++|+|+.... ...++|++|++|+++|+||+||||||+
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~---------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED---------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS---------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred cccccccccccccccccccccccchhcccccccccccc---------------ccchhhhhhhhcccccccccccccccc
Confidence 66788999999999999999999999999999975321 378999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeccccCCCC--CcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCc--------------cChH
Q 025159 176 CKKLGDILATAKIPPAANQVEMNPLW--QQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRV--------------MECE 239 (257)
Q Consensus 176 ~~~l~~~~~~~~~~p~~~q~~~~~~~--~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~--------------~~~~ 239 (257)
++.++++.....++|+++|++||++. ...+++++|+++||++++|+||++ |+|++.... ...+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 99999997778899999999999993 358999999999999999999998 998754321 4568
Q ss_pred HHHHHHHHhCCCcccccC
Q 025159 240 VLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 240 ~~~~ia~~~~~s~~qval 257 (257)
.+.++|+++|+|++|+||
T Consensus 220 ~l~~~a~~~g~s~~q~al 237 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLAL 237 (283)
T ss_dssp HHHHHHHHHTSSHHHHHH
T ss_pred hhhhhhhhcccccchhhh
Confidence 999999999999999985
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-43 Score=305.81 Aligned_cols=214 Identities=23% Similarity=0.303 Sum_probs=180.4
Q ss_pred ceecCCCCCcCCccceeCCcCCC-------CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCC
Q 025159 14 DVPLKSSNRRMPVLGLGTAASPF-------SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIK 83 (257)
Q Consensus 14 ~~~l~~~~~~vs~lglG~~~~~~-------~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~ 83 (257)
+++|+ + ++||+||||||+++. .+.+++.++++.|++.|||+||||+.|| +|..+|++++.
T Consensus 9 ~~~l~-g-~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------- 78 (290)
T PRK10376 9 TFTLG-G-RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------- 78 (290)
T ss_pred ceecC-C-eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc--------
Confidence 34566 4 999999999999863 3567899999999999999999999998 58899999862
Q ss_pred CCCcEEEEeccC---------CCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHH
Q 025159 84 SRDELFIASKLW---------CSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (257)
Q Consensus 84 ~R~~l~i~tK~~---------~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
.|+++||+||+. ....+++.+++++++||++||+||||+|++|++..... |. .....++|
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~-----p~------~~~~~~~~ 147 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG-----PA------EGSIEEPL 147 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCC-----CC------CCCHHHHH
Confidence 499999999973 23567899999999999999999999999998632100 00 12377899
Q ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc-HHHHHHHHHCCceEEEecCCCCCCCCCCCC
Q 025159 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIWGSN 233 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~ 233 (257)
++|++|+++||||+||||||++++++++.+.+. +.++|++||++.+. .+++++|+++||++++|+||++ +.
T Consensus 148 ~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~----- 219 (290)
T PRK10376 148 TVLAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT----- 219 (290)
T ss_pred HHHHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC-----
Confidence 999999999999999999999999999888764 46899999998874 6799999999999999999975 31
Q ss_pred CccChHHHHHHHHHhCCCcccccC
Q 025159 234 RVMECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 234 ~~~~~~~~~~ia~~~~~s~~qval 257 (257)
....+.+.++|+++|+|++|+||
T Consensus 220 -~~~~~~l~~ia~~~~~t~aq~al 242 (290)
T PRK10376 220 -PLQSSTLSDVAASLGATPMQVAL 242 (290)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHH
Confidence 12357899999999999999985
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.2e-43 Score=306.59 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=176.9
Q ss_pred CcCCccceeCCcCCC-----------CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCcEE
Q 025159 22 RRMPVLGLGTAASPF-----------SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELF 89 (257)
Q Consensus 22 ~~vs~lglG~~~~~~-----------~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg~~l~~~~~~~~~~~R~~l~ 89 (257)
++||+||||||++|. ++.+++.++|+.|++.|||+||||+.|| +|..+|++|+.. .|++++
T Consensus 3 ~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~~ 75 (292)
T PRK14863 3 SPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRVT 75 (292)
T ss_pred CcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEee
Confidence 789999999998873 4778999999999999999999999999 799999999731 356799
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEE
Q 025159 90 IASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI 169 (257)
Q Consensus 90 i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 169 (257)
|+||.. +.+++.+++++++||++||+||||+|++|+|+.... ....++|++|++|+++||||+|
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~--------------~~~~~~~~~l~~l~~~Gkir~i 139 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG--------------PHGAALWERLQALKDQGLFAKI 139 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC--------------cchHHHHHHHHHHHHcCCcceE
Confidence 999843 346799999999999999999999999999854211 0125789999999999999999
Q ss_pred EecCCCHHHHHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCCCCCCCCCc---------cC
Q 025159 170 GVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWGSNRV---------ME 237 (257)
Q Consensus 170 Gvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~---------~~ 237 (257)
|||||+++++.++.. ..+|+++|++||+++++ .+++++|+++||++++|+||++ |+|++.... ..
T Consensus 140 GvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~~ 216 (292)
T PRK14863 140 GVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASGR 216 (292)
T ss_pred eeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhHH
Confidence 999999999888764 45788999999999874 3699999999999999999998 999754211 11
Q ss_pred hHHHHHHHHHhCCCcccccC
Q 025159 238 CEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 238 ~~~~~~ia~~~~~s~~qval 257 (257)
...+.+++.++++|++|+||
T Consensus 217 ~~~~~~~~~~~~~s~aqlal 236 (292)
T PRK14863 217 LSRVRRMIAEGRSDPLQAAL 236 (292)
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 24466788889999999985
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3e-43 Score=287.44 Aligned_cols=224 Identities=28% Similarity=0.404 Sum_probs=197.9
Q ss_pred CCceecCCCCCcCCccceeCCcCCC--CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCC
Q 025159 12 IPDVPLKSSNRRMPVLGLGTAASPF--SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRD 86 (257)
Q Consensus 12 m~~~~l~~~~~~vs~lglG~~~~~~--~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~ 86 (257)
|.+.++++.++++|++.+|+|++.. .++.++...++.|++.|||+||-|+.|| .|.++|.+|+-. +- -|+
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~---p~--lRe 75 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA---PG--LRE 75 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC---hh--hhh
Confidence 6778899888999999999999976 6677999999999999999999999999 699999999955 33 699
Q ss_pred cEEEEeccCC------------CCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHH
Q 025159 87 ELFIASKLWC------------SDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW 154 (257)
Q Consensus 87 ~l~i~tK~~~------------~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
++.|+||++. .+.+.++|..++|+||++|++||+|+++||+|++. ++.+++.
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL----------------md~eeVA 139 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL----------------MDAEEVA 139 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc----------------CCHHHHH
Confidence 9999999942 34578999999999999999999999999999874 5589999
Q ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCCCCCC
Q 025159 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARGTIWG 231 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G~l~~ 231 (257)
+|+..|+++||||++|||||++.+++-+-..-..+.++||+++|+++.+ ++.+++|+++.|.+++||||+++|++.+
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 9999999999999999999999999999888888899999999999874 6799999999999999999998344443
Q ss_pred CCCc--cChHHHHHHHHHhC-CCcccccC
Q 025159 232 SNRV--MECEVLKEIAEAKG-KTVAQVLI 257 (257)
Q Consensus 232 ~~~~--~~~~~~~~ia~~~~-~s~~qval 257 (257)
... ....++..||.++| +|..+|++
T Consensus 220 -~~~~q~l~~~l~~ia~e~ga~s~~~Vai 247 (298)
T COG4989 220 -DDKFQRLRKVLDRIAEEYGAVSITAVAI 247 (298)
T ss_pred -CcchHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 23689999999999 79888763
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.4e-38 Score=260.60 Aligned_cols=228 Identities=22% Similarity=0.277 Sum_probs=185.0
Q ss_pred CCCCCceecCCCCCcCCccceeCCcCCC----CChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCC
Q 025159 9 SISIPDVPLKSSNRRMPVLGLGTAASPF----SGSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGI 81 (257)
Q Consensus 9 ~~~m~~~~l~~~~~~vs~lglG~~~~~~----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~ 81 (257)
.+.|.+|.+|++|++||+||||++.++. .+.++....+.+|++.|||+|||++.|| +|..+|.++++.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v----- 93 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV----- 93 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC-----
Confidence 5679999999999999999999987764 5788888889999999999999999999 799999999987
Q ss_pred CCCCCcEEEEeccCCC--------CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHH
Q 025159 82 IKSRDELFIASKLWCS--------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSV 153 (257)
Q Consensus 82 ~~~R~~l~i~tK~~~~--------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+|+.+||+||+.+. +++.+.+++++++||++|++||+|++++|+.+.... .+..+.|+
T Consensus 94 --PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~------------ld~vl~Et 159 (342)
T KOG1576|consen 94 --PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN------------LDIVLNET 159 (342)
T ss_pred --ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc------------ccHHHHHH
Confidence 89999999999653 567899999999999999999999999999765321 12347899
Q ss_pred HHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCcee--ccccCCCCCc-HHHHHHHHHCCceEEEecCCCCCCCCC
Q 025159 154 WEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAAN--QVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIW 230 (257)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~--q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~l~ 230 (257)
+.+|+++|++||+|+|||+.|+.+.+.++++...-...++ -.+|+..+.. -..+++.+.+|++|+.-++++. |+|+
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt 238 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLT 238 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhh
Confidence 9999999999999999999999999999987654333333 3555544332 4678888899999999999998 9998
Q ss_pred CCCCcc---Ch-------HHHHHHHHHhCCCccccc
Q 025159 231 GSNRVM---EC-------EVLKEIAEAKGKTVAQVL 256 (257)
Q Consensus 231 ~~~~~~---~~-------~~~~~ia~~~~~s~~qva 256 (257)
...+.. .. ....++|++.|+....+|
T Consensus 239 ~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA 274 (342)
T KOG1576|consen 239 NQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLA 274 (342)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 543321 12 334455666677666554
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=265.66 Aligned_cols=219 Identities=22% Similarity=0.305 Sum_probs=184.2
Q ss_pred CCceecCCCCCcCCccceeCCcCCC-----CChhHHHHHHHHHHHcCCceeeCCCCC--C-ChHHHHHHHHHHHhCCCCC
Q 025159 12 IPDVPLKSSNRRMPVLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDTATLY--Q-TEQPLGDAIAEALSTGIIK 83 (257)
Q Consensus 12 m~~~~l~~~~~~vs~lglG~~~~~~-----~~~~~~~~~l~~Al~~Gi~~~DtA~~Y--g-~e~~lg~~l~~~~~~~~~~ 83 (257)
|-+|+++.+|.++|.+|||+++++. ++.+.+.++|+.|++.||||||||..| | +|..+|++|++.
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------- 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------- 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-------
Confidence 6788898888999999999999975 589999999999999999999999999 6 899999999986
Q ss_pred CCCcEEEEeccCCCC-CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSD-AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN 162 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~-~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 162 (257)
.|++|+++||+..+. -+++.+++-++++|++||+||+|+|+||...... |....-.++++.++++++
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~------------~~k~~~~g~~df~~kak~ 141 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET------------WEKIERLGVFDFLEKAKA 141 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH------------HHHHHccChHHHHHHHHh
Confidence 799999999997543 3679999999999999999999999999985421 111112247999999999
Q ss_pred cCCeeEEEecCCC-HHHHHHHHHhCCCCCceeccccCCCCCc----HHHHHHHHHCCceEEEecCCCCCCCCCCCCCccC
Q 025159 163 LGYTKAIGVSNFS-CKKLGDILATAKIPPAANQVEMNPLWQQ----NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME 237 (257)
Q Consensus 163 ~G~ir~iGvs~~~-~~~l~~~~~~~~~~p~~~q~~~~~~~~~----~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~ 237 (257)
+|+||++|+|.|+ .+.+.+++....+ +++|+.||.++.. .+.+++|.++|++|+.++|+.+ |.|....
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~~--dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~v---- 214 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYPW--DFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYNV---- 214 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCCc--ceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccCC----
Confidence 9999999999996 5668888887774 4888888888764 3899999999999999999998 6664322
Q ss_pred hHHHHHHHHHhC--CCccccc
Q 025159 238 CEVLKEIAEAKG--KTVAQVL 256 (257)
Q Consensus 238 ~~~~~~ia~~~~--~s~~qva 256 (257)
.+.++++.++++ .||+.+|
T Consensus 215 P~~~~~l~~~~~~~~sP~~wa 235 (391)
T COG1453 215 PEKLEELCRPASPKRSPAEWA 235 (391)
T ss_pred CHHHHHHHHhcCCCCCcHHHH
Confidence 378888888886 5666554
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=99.07 E-value=1.7e-09 Score=88.74 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHhC--CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh-------CCCcccEE---EeecCCCCC
Q 025159 65 TEQPLGDAIAEALST--GIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL-------QLEYIDLY---VIHWPVSSK 132 (257)
Q Consensus 65 ~e~~lg~~l~~~~~~--~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L-------g~d~lDl~---~lh~p~~~~ 132 (257)
+|+.-+...+..=++ .....++++-+..|++-.++.-+.++...++.++-+ ++|..--. +.|.-.-..
T Consensus 52 ~eelh~cvq~~lnEssq~~~d~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v 131 (285)
T KOG3023|consen 52 NEELHICVQVPLNESSQKLDDKQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKV 131 (285)
T ss_pred hHHHHHHHHHhhccccccCcccccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecc
Confidence 555555554433111 122256778888888766666667777777666654 22211111 111100000
Q ss_pred CC-----CCCCCCcc-cCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC-cHH
Q 025159 133 PG-----SYEFPIKK-EDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ-QNK 205 (257)
Q Consensus 133 ~~-----~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~-~~~ 205 (257)
++ ....+..+ .+.....+.+.|+.||+++.+|+|..||||.|++.+|++++..++++|.++|+++.-+|. +.+
T Consensus 132 ~~lssv~ia~~sied~~n~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpd 211 (285)
T KOG3023|consen 132 SGLSSVNIAYDSIEDIPNQEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPD 211 (285)
T ss_pred cCccchhccCChhhhcchhhHHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHH
Confidence 00 00001111 112234577899999999999999999999999999999999999999999999999987 689
Q ss_pred HHHHHHHCCceEEEec
Q 025159 206 LREFCKAKDIQLAAYA 221 (257)
Q Consensus 206 ~~~~~~~~gi~v~~~~ 221 (257)
+.+||.+++|++..++
T Consensus 212 Lqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 212 LQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHhhhcceeeeecC
Confidence 9999999999999986
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.19 E-value=1 Score=36.70 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=74.6
Q ss_pred HHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhC
Q 025159 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (257)
Q Consensus 107 ~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 186 (257)
.+++.|..+.-+.+|.+.+..-- .....-.+.|+++.+-|+-.-|++.||.-+....-+-..
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL------------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~ 124 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL------------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLR 124 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH------------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhc
Confidence 35556666666677777766421 113344556777788888778999999988877666655
Q ss_pred CCCCceeccccCCCCCc-------HHHHHHHHHCCceEEEecCCCC
Q 025159 187 KIPPAANQVEMNPLWQQ-------NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 187 ~~~p~~~q~~~~~~~~~-------~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
+--|..-.++|+-++.+ ++.-++|++.||.|.-..++..
T Consensus 125 GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 125 GRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 66677788888876653 7899999999999999999876
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.77 E-value=6.3 Score=34.53 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=93.0
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChH--HHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQ--PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLEN 114 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~--~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~ 114 (257)
.+.++..+.++.+.+.|++.|+.--.-..+. ..=+++++. . . ++-|..+... .++.+.. ..+-+.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~----~--g--~~~l~vD~n~-~~~~~~A-~~~~~~l~~ 202 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA----A--P--DARLRVDANQ-GWTPEEA-VELLRELAE 202 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh----C--C--CCeEEEeCCC-CcCHHHH-HHHHHHHHh
Confidence 3667788888999999999998653211121 122233332 1 2 5667777643 2333322 223334444
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCcee
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAAN 193 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~ 193 (257)
+ ++.++..|-.. .-|+.+.+|++...+. ..|=+-++.+.+.++++...++ ++
T Consensus 203 ~-----~l~~iEeP~~~--------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~v 255 (316)
T cd03319 203 L-----GVELIEQPVPA--------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--GI 255 (316)
T ss_pred c-----CCCEEECCCCC--------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--EE
Confidence 4 45555655321 2256677788776665 4466778999999998877665 77
Q ss_pred ccccCCCCC---cHHHHHHHHHCCceEEEecCCC
Q 025159 194 QVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 194 q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
|...+...- -..+..+|+++|+.++.++-+.
T Consensus 256 ~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~ 289 (316)
T cd03319 256 NIKLMKTGGLTEALRIADLARAAGLKVMVGCMVE 289 (316)
T ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEECchh
Confidence 776554322 2678999999999999876554
No 21
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=92.22 E-value=4.8 Score=36.32 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=81.8
Q ss_pred hhHHHHHHHHH-----------HhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CCeeEE
Q 025159 102 ELVVPALQKSL-----------ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAI 169 (257)
Q Consensus 102 ~~i~~~l~~sL-----------~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~i 169 (257)
+.++..++... +.+| +|++.||.-.....+. +...++..+..++..+. +.=--|
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~-----------d~~~~e~a~~vk~V~~av~vPLIL 193 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLD-----------DKSPSEAAKVLEDVLQAVDVPIVI 193 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCcccc-----------ccCHHHHHHHHHHHHHhCCCCEEE
Confidence 55665555544 5555 6899999754322111 23456777777776443 322234
Q ss_pred Eec---CCCHHHHHHHHHhCCC-CCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHH
Q 025159 170 GVS---NFSCKKLGDILATAKI-PPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIA 245 (257)
Q Consensus 170 Gvs---~~~~~~l~~~~~~~~~-~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia 245 (257)
+=| ..+++.+++.++.+.- +|.++-.+... .-..+.+.|+++|.++++++|..- +.+ ..+...+
T Consensus 194 ~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di-n~a---------k~Ln~kL 261 (389)
T TIGR00381 194 GGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI-NMQ---------KTLNRYL 261 (389)
T ss_pred eCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH-HHH---------HHHHHHH
Confidence 433 6689999999998875 67777544431 225799999999999999998865 432 4444445
Q ss_pred HHhCCCccccc
Q 025159 246 EAKGKTVAQVL 256 (257)
Q Consensus 246 ~~~~~s~~qva 256 (257)
.++|+.+.++.
T Consensus 262 ~~~Gv~~eDIV 272 (389)
T TIGR00381 262 LKRGLMPRDIV 272 (389)
T ss_pred HHcCCCHHHEE
Confidence 57777765543
No 22
>PRK08392 hypothetical protein; Provisional
Probab=90.08 E-value=9.6 Score=31.44 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 40 ETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
....++++.|.+.|++.+=.++... ...-+...+++..+-. .+.++-|..=+= -+..++. ....+..++ ..
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE-~~~~~~~-~~~~~~~~~--~~ 86 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIE-ANITPNG-VDITDDFAK--KL 86 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEE-eeecCCc-chhHHHHHh--hC
Confidence 3478999999999999886665532 1111222222221101 122332221110 0011111 223333444 34
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecC----C----CHHHHHHHHHhC---
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN----F----SCKKLGDILATA--- 186 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~~--- 186 (257)
||+ +.-+|.... + ...+..++.+.++.+.+.+--+|=-. + ..+.++++++.+
T Consensus 87 D~v-I~SvH~~~~--~--------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~ 149 (215)
T PRK08392 87 DYV-IASVHEWFG--R--------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAY 149 (215)
T ss_pred CEE-EEEeecCcC--C--------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHh
Confidence 555 666784311 1 11456778888888888866665321 1 123444444433
Q ss_pred CCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccc
Q 025159 187 KIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 187 ~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qv 255 (257)
+....+|- ....+...+++.|++.|+.++.-|==.. +..+-.-+...+++++.|.++.++
T Consensus 150 g~~lEiNt---~~~~p~~~~l~~~~~~G~~~~igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 150 GKAFEISS---RYRVPDLEFIRECIKRGIKLTFASDAHR------PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CCEEEEeC---CCCCCCHHHHHHHHHcCCEEEEeCCCCC------hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 34444442 1123446799999999988654331111 111222367789999999887765
No 23
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=89.64 E-value=14 Score=32.81 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCC-----hHHHH---HHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQT-----EQPLG---DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~-----e~~lg---~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~ 109 (257)
+.++..+.++.+.+.|++.|-.--..+. .+..- +++++. --+++.|...... .++.+.. .
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a----~ 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEA----I 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHH----H
Confidence 4677888888889999998875433322 12222 233332 1245666666532 2333332 2
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCC
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKI 188 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~ 188 (257)
+.++.|. ..++.+++.|.. .+.++.+..+++.-.+. ..|=|.++++.+.++++...+
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~--------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVP--------------------PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCC--------------------ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 3333342 135556676632 12356677787775554 455667889999999987655
Q ss_pred CCceeccccCCCC---CcHHHHHHHHHCCceEEEecC
Q 025159 189 PPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 189 ~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~p 222 (257)
+ ++|+...-+. .-..+.+.|+++|+.++.++-
T Consensus 265 d--~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 265 D--IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred C--EEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 4 7776655432 236899999999999887753
No 24
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=89.54 E-value=3.4 Score=37.97 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCc-cHHHHHHHH-HHHHHcCCeeEEEecCCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPM-DFKSVWEAM-EECQNLGYTKAIGVSNFS 175 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~l~~~G~ir~iGvs~~~ 175 (257)
..+.+.+.+.++..++ |+.|+|.+|.+-............ ++. ..++. ..-+.++.. +.|.+.|. +.+|+|||.
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~-~~~-~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa 275 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKI-KGK-ALPDEDEKADMYELVEELLEKAGY-RQYEISNFA 275 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcc-cCC-CCcChHHHHHHHHHHHHHHHHCCC-cEEeechhc
Confidence 4467888888888887 889999999886432211100000 000 01111 112344444 34677888 889999998
Q ss_pred H
Q 025159 176 C 176 (257)
Q Consensus 176 ~ 176 (257)
.
T Consensus 276 ~ 276 (416)
T COG0635 276 K 276 (416)
T ss_pred C
Confidence 7
No 25
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=88.21 E-value=15 Score=31.30 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEE-eecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYV-IHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~-lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 178 (257)
+++.+.+..++.+ +-|.|.||+=. -.+|... +.+. ....+.....++.+++.-.+ -|.+-+++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-------~~~~----~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v 88 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE-------PVSV----EEELERVIPVLRALAGEPDV-PISVDTFNAEV 88 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-------cCCH----HHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHH
Confidence 5566666666554 56888888853 2223210 0000 11234455666666655333 38999999999
Q ss_pred HHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
+++.++.+ .+.+|-+ +....+.++++.++++|.+++.+..-+
T Consensus 89 ~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 89 AEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 99999976 5556633 333323679999999999999886443
No 26
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=86.13 E-value=7.6 Score=34.33 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=70.8
Q ss_pred HHHHhhCCCcccEEEeec-CCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe-eEEEecCC---CHHHHHHHHH
Q 025159 110 KSLENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT-KAIGVSNF---SCKKLGDILA 184 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~---~~~~l~~~~~ 184 (257)
+.-+.+|.|+||+-+.-. |+.. ....++..+..+...+.=.+ -.|..|.. +++.+++.++
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~---------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale 147 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK---------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAE 147 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc---------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHH
Confidence 334578888887765332 2110 11233444444444332222 22666643 8999999999
Q ss_pred hCC-CCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccc
Q 025159 185 TAK-IPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 185 ~~~-~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qv 255 (257)
.+. -+|.++-.+.. .-..+.+.|+++|..+++.+|..- .....+...+.++|+++.++
T Consensus 148 ~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 148 AAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNILLTELGVPRERI 206 (319)
T ss_pred HhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHHHHHcCCCHHHE
Confidence 887 44666644432 236799999999999999986642 22355566666777766554
No 27
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=85.48 E-value=12 Score=32.01 Aligned_cols=135 Identities=15% Similarity=0.101 Sum_probs=80.8
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
+.+.+.+..++.. .-|.++||+=.=-.+ ....+.....++.+++.-.+ -|-+-+++++.+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~~~------------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~ 82 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGTAV------------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAI 82 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCc------------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHH
Confidence 3455555555544 578899998642111 11134455556666554233 489999999999
Q ss_pred HHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCC-CCccChHHHHHHHHHhCCCccccc
Q 025159 180 GDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGS-NRVMECEVLKEIAEAKGKTVAQVL 256 (257)
Q Consensus 180 ~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~-~~~~~~~~~~~ia~~~~~s~~qva 256 (257)
+..++.+.-.+.+|-+.... .+...+++.++++|++++...--.. |.-... .....-..+.+.|.++|+++.++.
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii 158 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMDDT-GIPKDAEDRLAVAKELVEKADEYGIPPEDIY 158 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecCCC-CCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence 99999865456676444321 2245789999999999998643222 421000 001112445667788899877664
No 28
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=85.41 E-value=26 Score=32.63 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC--CCChhhHHHHHHHHHH-hhCCCcccEEEeecCCCCCCCCCC
Q 025159 61 TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--DAHRELVVPALQKSLE-NLQLEYIDLYVIHWPVSSKPGSYE 137 (257)
Q Consensus 61 ~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~--~~~~~~i~~~l~~sL~-~Lg~d~lDl~~lh~p~~~~~~~~~ 137 (257)
-.||.++.+-++|++..+... +-+-++|.|-+-+. ..+.+.+.+.+++-++ +..--.+.++.+|.|.....
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~~--~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs---- 139 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRYP--DLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS---- 139 (454)
T ss_pred eEECcHHHHHHHHHHHHHhcC--CCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC----
Confidence 357888899999998765431 12446777776443 1223333333333221 11101368888898865321
Q ss_pred CCCcccCCCCccHHHHHHHHHH-HHH----cCCeeEEEecC--CCHHHHHHHHHhCCCCC
Q 025159 138 FPIKKEDFLPMDFKSVWEAMEE-CQN----LGYTKAIGVSN--FSCKKLGDILATAKIPP 190 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~-l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~p 190 (257)
.......+++++-+ +.. +++|--||-.+ -+.+++.++++..++++
T Consensus 140 --------~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 140 --------MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 00112233333322 211 46788887432 34577888888888764
No 29
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.19 E-value=13 Score=31.86 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHcCCeeEEEecCC-------CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 149 DFKSVWEAMEECQNLGYTKAIGVSNF-------SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
..+.+++.+++.++++.---|++-.| ..+.+-+-.+..+++-.++ +=-|.....++.+.|+++||..+-.-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcEEEEe
Confidence 35566666666665544434444333 2222222233333332111 11112223467777777777776443
Q ss_pred C
Q 025159 222 P 222 (257)
Q Consensus 222 p 222 (257)
+
T Consensus 155 a 155 (265)
T COG0159 155 A 155 (265)
T ss_pred C
Confidence 3
No 30
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=84.29 E-value=22 Score=31.05 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=68.9
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe-eEEEecCC---CHHHHHHHHHhC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT-KAIGVSNF---SCKKLGDILATA 186 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~---~~~~l~~~~~~~ 186 (257)
..+++| .|++.||-..... ...+.+.+++.+.|+++.+.=+| -.||-|.. +++.|+++.+.+
T Consensus 159 ~Vk~fg---admvTiHlIsTdP-----------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEva 224 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDP-----------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVA 224 (403)
T ss_pred HHHHhC---CceEEEEeecCCc-----------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhh
Confidence 345677 5889999764321 23345689999999999888776 44677765 688888887766
Q ss_pred C-CCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 187 K-IPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 187 ~-~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
. -.+.+. +.|+-..-..+.+.+.++|=.|++|+++.
T Consensus 225 EGeRclLa--SanldlDy~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 225 EGERCLLA--SANLDLDYERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cCceEEee--ccccccCHHHHHHHHHhcCceEEEeeccC
Confidence 4 333333 33332233678999999999999999885
No 31
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.83 E-value=28 Score=29.52 Aligned_cols=152 Identities=15% Similarity=0.115 Sum_probs=90.7
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCChHH--HHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQP--LGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~--lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
+.++..+.++.+.+.|++.|-.--.-..+.- .=+++++. --+++.|...... .++.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHHH-HHHHhc
Confidence 5577778888889999998865432212221 22334433 1235555555432 23333332222 333433
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceec
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQ 194 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q 194 (257)
++.+++.|... +-++.+.++++.-.+. ..|=+-+++..+.++++...++ ++|
T Consensus 156 -----~i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d--~v~ 208 (265)
T cd03315 156 -----GLDYVEQPLPA--------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAAD--AVN 208 (265)
T ss_pred -----CCCEEECCCCc--------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCC--EEE
Confidence 45556766321 2246667777765554 4566677899999988866655 777
Q ss_pred cccCCCCC---cHHHHHHHHHCCceEEEecCCCC
Q 025159 195 VEMNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 195 ~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
...+...- -..+.+.|+++|+.++.++.+.+
T Consensus 209 ~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 209 IKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 76554332 36889999999999998766543
No 32
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=81.70 E-value=43 Score=30.77 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC-CCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg-~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.||.+..+-+++++..+.. +.+-++|.+-+-+.-. -+.+..-+++.-++.. -.-+.++.++.|.....
T Consensus 62 V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~li-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~------- 130 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTETI-GDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS------- 130 (428)
T ss_pred eECcHHHHHHHHHHHHHhc---CCCEEEEECCcchhhc-CCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc-------
Confidence 4678889999999886553 3345677766543211 1233333333222211 01356788887754321
Q ss_pred cccCCCCccHHHHHHHHHHH-------HHcCCeeEEEecCC---CHHHHHHHHHhCCCCCce
Q 025159 141 KKEDFLPMDFKSVWEAMEEC-------QNLGYTKAIGVSNF---SCKKLGDILATAKIPPAA 192 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~p~~ 192 (257)
.....+.++++|-+. ++.++|--||-++. +.+++.++++..++++..
T Consensus 131 -----~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 131 -----HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred -----HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 011233444444432 23567888876654 468899999988877433
No 33
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=81.46 E-value=23 Score=32.21 Aligned_cols=141 Identities=23% Similarity=0.265 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEE---Eecc--CCCCCChhhHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFI---ASKL--WCSDAHRELVVPALQK 110 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i---~tK~--~~~~~~~~~i~~~l~~ 110 (257)
.+.++-.+=++.|++.|-. ..|.+. .|.-..+.+.+-+. ..+ +-..|-| ..+. ...+.+++.+-+.+++
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~--s~v--pvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDA--VPV--PVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 4555556678999999975 567664 34443343333221 011 1111100 0010 1234577788888887
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
..+ |=+|.+-||.- -..+.++.+++.|++ .|+.+-.-.-+..++....
T Consensus 149 qa~----dGVDfmTiH~G-----------------------i~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~--- 196 (423)
T TIGR00190 149 QAK----DGVDFMTIHAG-----------------------VLLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHH--- 196 (423)
T ss_pred HHH----hCCCEEEEccc-----------------------hhHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcC---
Confidence 776 56889999985 235778899998865 6777666555555544322
Q ss_pred ceeccccCCCCCc-HHHHHHHHHCCceEEE
Q 025159 191 AANQVEMNPLWQQ-NKLREFCKAKDIQLAA 219 (257)
Q Consensus 191 ~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~ 219 (257)
.=||+... +++++.|+++++.+--
T Consensus 197 -----~ENPlye~fD~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 197 -----KENPLYKNFDYILEIAKEYDVTLSL 221 (423)
T ss_pred -----CcCchHHHHHHHHHHHHHhCeeeec
Confidence 12233322 4577777777776643
No 34
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.38 E-value=36 Score=29.07 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEe-ecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVI-HWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~l-h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 178 (257)
+.+.+.+..++.+ +-|.+.||+=-- .+|..... . .....+.+...+..+++.-.+- |.+-+++++.
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i-------~----~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v 88 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPV-------S----VEEELERVIPVLEALRGELDVL-ISVDTFRAEV 88 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCC-------C----HHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHH
Confidence 4455555554444 458888888532 23322110 0 0111233444456666553443 8999999999
Q ss_pred HHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCC-CC-----Ccc-----ChHHHHHHHHH
Q 025159 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWG-SN-----RVM-----ECEVLKEIAEA 247 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~-~~-----~~~-----~~~~~~~ia~~ 247 (257)
++++++.. .+.+| ..+....+..+++.++++|.+++.+.-- |.-.. .. .+. .-....+.|++
T Consensus 89 ~e~al~~G--~~iIN--disg~~~~~~~~~l~~~~~~~vV~m~~~---g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 89 ARAALEAG--ADIIN--DVSGGSDDPAMLEVAAEYGAPLVLMHMR---GTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred HHHHHHhC--CCEEE--eCCCCCCChHHHHHHHHcCCCEEEECCC---CCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999874 34455 3344333368999999999999996542 32110 00 000 12344567788
Q ss_pred hCCCccccc
Q 025159 248 KGKTVAQVL 256 (257)
Q Consensus 248 ~~~s~~qva 256 (257)
+|++..++.
T Consensus 162 ~Gi~~~~Ii 170 (257)
T cd00739 162 AGVARNRII 170 (257)
T ss_pred cCCCHHHEE
Confidence 888766554
No 35
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=79.39 E-value=30 Score=31.65 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEE---Eecc-----CCCCCChhhHHHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFI---ASKL-----WCSDAHRELVVPA 107 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i---~tK~-----~~~~~~~~~i~~~ 107 (257)
.+.++-.+=++.|.+.|-. ..|.+. .|.-..+.+.+-+.. .+ +-..|-| ..+. ...+.+++.+.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~s--~v--pvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEAS--PV--PVGTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcC--CC--CCcChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 4555556668999999975 556654 333333333322110 11 1111000 0000 1234577888888
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC
Q 025159 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (257)
Q Consensus 108 l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 187 (257)
+++..+ |=+|.+-||.-. ..+.++.+++.|++ .|+.+-.-.-+..++....
T Consensus 149 ie~qa~----~GVDfmTiHcGi-----------------------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~ 199 (431)
T PRK13352 149 IEKQAK----DGVDFMTIHCGV-----------------------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN 199 (431)
T ss_pred HHHHHH----hCCCEEEEccch-----------------------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC
Confidence 887777 668999999852 34778889988865 7777776666555544322
Q ss_pred CCCceeccccCCCCCc-HHHHHHHHHCCceEEEecCC
Q 025159 188 IPPAANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 188 ~~p~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl 223 (257)
.=||+... +++++.|+++++.+----.|
T Consensus 200 --------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 200 --------KENPLYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred --------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 22333332 57888888888877543333
No 36
>PRK08609 hypothetical protein; Provisional
Probab=78.13 E-value=51 Score=31.66 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCceeeCCCCCC--------ChHHHHHH---HHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 025159 41 TTKLAILEAMKLGYRHFDTATLYQ--------TEQPLGDA---IAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (257)
Q Consensus 41 ~~~~~l~~Al~~Gi~~~DtA~~Yg--------~e~~lg~~---l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~ 109 (257)
...++++.|.+.|++++=.++... +..-+-.. ++++ .+.. ..=.++.-.=+. +.++....-.+
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~--~~i~Il~GiEv~---i~~~g~~d~~~ 423 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKY--PEIDILSGIEMD---ILPDGSLDYDD 423 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhc--CCCeEEEEEEEe---ecCCcchhhcH
Confidence 467799999999999887766641 12222222 2222 0010 111222222221 11112222233
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecC------CC--HHHHHH
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN------FS--CKKLGD 181 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~--~~~l~~ 181 (257)
..|+. .||+ +.-+|++.. .+.++.++.+.++.+.|.+--||=-. +. ...+++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~-----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~ 483 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS-----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQ 483 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC-----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHH
Confidence 34543 4665 677786521 12467788899999899877666332 11 233444
Q ss_pred HHHhCCCCCceeccccCCCC--CcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccc
Q 025159 182 ILATAKIPPAANQVEMNPLW--QQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 182 ~~~~~~~~p~~~q~~~~~~~--~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qv 255 (257)
+++.+.-.-.++|++-++.. ....++..|++.|+.+..-| =+. .+..+..-+.-..+|++-|.++.+|
T Consensus 484 i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igS-DAH-----~~~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 484 LIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINT-DAH-----HTEMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEEC-CCC-----ChhhhCcHHHHHHHHHHcCCCHHHc
Confidence 44442212234555554432 24679999999999765433 222 1222334567778888888877665
No 37
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=78.01 E-value=51 Score=29.50 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
+.++..+.+..+.+.|++.|=.-- .+. =+++++. --+++.|..-.. ..++++. ..+.++.|.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv----~~~-v~avre~-------~G~~~~l~vDaN-~~w~~~~----A~~~~~~l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL----PKL-FEAVREK-------FGFEFHLLHDVH-HRLTPNQ----AARFGKDVE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH----HHH-HHHHHhc-------cCCCceEEEECC-CCCCHHH----HHHHHHHhh-
Confidence 456667777778889999874311 111 2233332 123445554443 2234433 233333343
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccc
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVE 196 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~ 196 (257)
.+++.++..|.. .+-++.+.+|++...+. ..|=|-+++..+..+++...++ ++|..
T Consensus 188 -~~~l~~iEeP~~--------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~d--i~~~d 244 (361)
T cd03322 188 -PYRLFWMEDPTP--------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLID--YIRTT 244 (361)
T ss_pred -hcCCCEEECCCC--------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCC--EEecC
Confidence 247778887743 13367788888887764 6788888999999998876544 77777
Q ss_pred cCCCC---CcHHHHHHHHHCCceEEEecCC
Q 025159 197 MNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 197 ~~~~~---~~~~~~~~~~~~gi~v~~~~pl 223 (257)
..-.. .-..+.+.|+++|+.++.++..
T Consensus 245 ~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 245 VSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 65432 2368999999999999876543
No 38
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=77.67 E-value=49 Score=29.12 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=91.6
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
++++..+.+..+.+.|++.|=.--.-..+...=+++++. - .++.|..-.. ..++++..+ .+++|.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-------~-~~~~l~vDaN-~~~~~~~a~-----~~~~l~- 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-------F-PQIPLVIDAN-ESYDLQDFP-----RLKELD- 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-------C-CCCcEEEECC-CCCCHHHHH-----HHHHHh-
Confidence 557777888888899999873211001222233344543 1 2333333332 223444431 133333
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccc
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVE 196 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~ 196 (257)
..++.++..|.. .+-++.+.++++.-.+. ..|=|.++...+..+++...++ ++|..
T Consensus 197 -~~~~~~iEeP~~--------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--vi~~d 253 (324)
T TIGR01928 197 -RYQLLYIEEPFK--------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK--VINIK 253 (324)
T ss_pred -hCCCcEEECCCC--------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC--EEEeC
Confidence 246777777742 24467788888876653 6688899999999998876655 77776
Q ss_pred cCCCCC---cHHHHHHHHHCCceEEEecCCCC
Q 025159 197 MNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 197 ~~~~~~---~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
..-+.- -..+.+.|+++|+.++..+.+.+
T Consensus 254 ~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 254 PGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred cchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 654332 36899999999999998765543
No 39
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=77.22 E-value=25 Score=25.46 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=59.6
Q ss_pred HHHHHHc-CCeeEEEecCCCHHHHHHHHHhCCCC-------------CceeccccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 157 MEECQNL-GYTKAIGVSNFSCKKLGDILATAKIP-------------PAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 157 l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~-------------p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
+..+.+. ..++-+|+++-+++..+.+.+..+++ ++++-+. ++-....+++..|-++|+.++.=.|
T Consensus 16 ~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 16 LRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEEcC
Confidence 4455555 66788899999988888776655433 1111110 1111236789999999999999999
Q ss_pred CCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 223 LGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 223 l~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
++. +......+.+.|+++|+.
T Consensus 95 ~~~--------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 95 LAL--------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp SSS--------SHHHHHHHHHHHHHHTSC
T ss_pred CcC--------CHHHHHHHHHHHHHhCCE
Confidence 986 455678889999999875
No 40
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=76.56 E-value=20 Score=30.89 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHcCCeeEEE----ecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 157 MEECQNLGYTKAIG----VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 157 l~~l~~~G~ir~iG----vs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
+..++...++-.+- .+-||...+.++.+..+++..++-..||+... ++.++|++.|+++++.-|+..
T Consensus 180 i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 180 IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 33455555543332 22355666777778888888887778866555 899999999999999999854
No 41
>PRK06361 hypothetical protein; Provisional
Probab=75.88 E-value=42 Score=27.38 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHcCCceeeCCCCCC--ChH-HH---HHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 40 ETTKLAILEAMKLGYRHFDTATLYQ--TEQ-PL---GDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~-~l---g~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
....+++..|.+.|+..+=.++... +.. .+ -+..+++ ... ..=+++...-+.. ..++.+ ..+...+.
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~---~~~-~~i~v~~GiE~~~--~~~~~~-~~~~~~~~ 82 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL---ELY-WDIEVIPGVELTH--VPPKLI-PKLAKKAR 82 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH---hhc-CCCEEEEEEEEcc--cCchhh-chHHHHHH
Confidence 3478999999999999886666543 111 11 1112222 100 1112232222221 122233 33345555
Q ss_pred hhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCce
Q 025159 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAA 192 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~ 192 (257)
+++ .|+..+|......+ . ..... ..+.+.|.+.-+|=-.+ ..+ +.+++...++.+.+
T Consensus 83 ~~~---~~~~svH~~~~~~~----------------~-~~~~~-~~a~~~~~~dvlaHpd~~~~~-~~~~~~~~~~~lEi 140 (212)
T PRK06361 83 DLG---AEIVVVHGETIVEP----------------V-EEGTN-LAAIECEDVDILAHPGLITEE-EAELAAENGVFLEI 140 (212)
T ss_pred HCC---CEEEEECCCCcchh----------------h-hhhhH-HHHHhCCCCcEecCcchhhHH-HHHHHHHcCeEEEE
Confidence 665 46668994321111 0 00011 45667887755553222 222 23444444444444
Q ss_pred eccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccc
Q 025159 193 NQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 193 ~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qv 255 (257)
|- ..........+++.+++.|++++.-|.-.. +..+...+.+..++++.|.+..+|
T Consensus 141 n~-~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v 196 (212)
T PRK06361 141 TA-RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKEL 196 (212)
T ss_pred EC-CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 42 111112236799999999999887776653 223334577888888888877665
No 42
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.55 E-value=24 Score=32.12 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccC-CCCCChhhHHHHHHHHHHhhCC
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLW-CSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~-~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
......+++.|++.|++++||+........+....+ +..+-+..-++ .+..+---....+++-.+ .+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EI 145 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--cc
Confidence 344568999999999999999987654322232222 23333333332 223321222222222222 58
Q ss_pred CcccEEEeecCCCC
Q 025159 118 EYIDLYVIHWPVSS 131 (257)
Q Consensus 118 d~lDl~~lh~p~~~ 131 (257)
+++|+|..+-|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 89999999998664
No 43
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=75.28 E-value=6.8 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC--cHHHHHHHHHCCceEEEecCCCCC
Q 025159 149 DFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ--QNKLREFCKAKDIQLAAYAPLGAR 226 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~--~~~~~~~~~~~gi~v~~~~pl~~~ 226 (257)
..++..+++..|+-+|-+--==.|.|....++.+.+..+++ .|.|+|. +.++....-+.|..++.-+.-+.
T Consensus 74 eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~- 146 (223)
T COG2102 74 EVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE- 146 (223)
T ss_pred hHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEecc-
Confidence 46777888888873333211114566677788888877765 5667775 35666666666766666555554
Q ss_pred CCCC---CCCCc-cChHHHHHHHHHhCCCcc
Q 025159 227 GTIW---GSNRV-MECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 227 G~l~---~~~~~-~~~~~~~~ia~~~~~s~~ 253 (257)
|+.. |..-- ...+.++.+.++||+.|+
T Consensus 147 gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 147 GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 5431 22111 235888999999999875
No 44
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=75.06 E-value=37 Score=28.79 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhCCCCCCCC--cEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCccc
Q 025159 66 EQPLGDAIAEALSTGIIKSRD--ELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKE 143 (257)
Q Consensus 66 e~~lg~~l~~~~~~~~~~~R~--~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~ 143 (257)
...+..+++... . .+. .+.++..+.+.......+...+.+.+++.+++.- -+.+.--+...
T Consensus 69 ~~v~~~a~~~~~---~--~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~----------- 131 (256)
T COG2200 69 RWVLEEACRQLR---T--WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESAL----------- 131 (256)
T ss_pred HHHHHHHHHHHH---h--hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchh-----------
Confidence 556666666652 1 222 4788888866554446777788889999887642 33333222110
Q ss_pred CCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHH--HHHHHHhCCCCCceeccccCCCCC--------c--HHHHHHHH
Q 025159 144 DFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK--LGDILATAKIPPAANQVEMNPLWQ--------Q--NKLREFCK 211 (257)
Q Consensus 144 ~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~--l~~~~~~~~~~p~~~q~~~~~~~~--------~--~~~~~~~~ 211 (257)
......+...+..|++.| + .|.+.+|.... +..+.+ .+|+.+-+.-+.... . ..++..|+
T Consensus 132 ---~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~ 203 (256)
T COG2200 132 ---IDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAH 203 (256)
T ss_pred ---hcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHH
Confidence 112446788999999999 3 37777775332 444433 333343333332221 1 57899999
Q ss_pred HCCceEEEec
Q 025159 212 AKDIQLAAYA 221 (257)
Q Consensus 212 ~~gi~v~~~~ 221 (257)
+.|+.+++-.
T Consensus 204 ~l~~~vvaEG 213 (256)
T COG2200 204 KLGLTVVAEG 213 (256)
T ss_pred HCCCEEEEee
Confidence 9999999865
No 45
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=74.13 E-value=2.9 Score=37.50 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=33.8
Q ss_pred cCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCC-C-CcHHHHHHHHHCCce
Q 025159 163 LGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPL-W-QQNKLREFCKAKDIQ 216 (257)
Q Consensus 163 ~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~-~-~~~~~~~~~~~~gi~ 216 (257)
-|+||++||--|+++.+.++....+-+ .+.+....++ + .+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 599999999999999998886654421 2222222222 2 234677777777763
No 46
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=73.42 E-value=57 Score=27.81 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CCeeEEEecCCCHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGVSNFSCKK 178 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~ 178 (257)
+++.+.+..++.+ +-|.++||+= .....|+... ... ....+.+...++.+++. +. -|.+-+++++.
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG----~~st~p~~~~--i~~----~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~v 87 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVG----GESTRPGADR--VSP----EEELNRVVPVIKALRDQPDV--PISVDTYRAEV 87 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEC----CCCCCCCCCC--CCH----HHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHH
Confidence 5566666666554 4688999992 1111111000 000 00122355555666655 43 38999999999
Q ss_pred HHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
++++++.. .+.+|-+.. .. ..++++.++++|.+++.+.
T Consensus 88 i~~al~~G--~~iINsis~--~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 88 ARAALEAG--ADIINDVSG--GQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHcC--CCEEEECCC--CC-CchhHHHHHHcCCcEEEEe
Confidence 99999873 334554433 22 4578999999999999965
No 47
>PLN00191 enolase
Probab=73.02 E-value=82 Score=29.42 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=56.0
Q ss_pred ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEE-ec-CCCHHHHHHHHHhCCCCCceecccc
Q 025159 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG-VS-NFSCKKLGDILATAKIPPAANQVEM 197 (257)
Q Consensus 120 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG-vs-~~~~~~l~~~~~~~~~~p~~~q~~~ 197 (257)
.++.+|..|-. .+-|+.+.+|.+..++.-+| =+ ..++..+.++++....+ ++++..
T Consensus 311 y~I~~IEDPl~--------------------~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad--~i~iKl 368 (457)
T PLN00191 311 YPIVSIEDPFD--------------------QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACN--ALLLKV 368 (457)
T ss_pred CCcEEEECCCC--------------------cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCC--EEEecc
Confidence 46788888843 23467777888888887666 22 36688899988876554 555555
Q ss_pred CCCCC---cHHHHHHHHHCCceEEEec
Q 025159 198 NPLWQ---QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 198 ~~~~~---~~~~~~~~~~~gi~v~~~~ 221 (257)
+-... ..++++.|+++|+.++..+
T Consensus 369 ~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 369 NQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 54332 3678999999999997643
No 48
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=72.90 E-value=37 Score=33.17 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE 118 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d 118 (257)
-|.+.++++.|-|.|++.+ ..|..+. -..--|+ +-|+-|+..|..++-..+-.|.+-++- .++ .
T Consensus 42 gEIaIRvFRa~tEL~~~tv---AiYseqD-~~sMHRq--------KADEaY~iGk~l~PV~AYL~ideii~i-ak~---~ 105 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTV---AIYSEQD-RLSMHRQ--------KADEAYLIGKGLPPVGAYLAIDEIISI-AKK---H 105 (1176)
T ss_pred CcchhHHHHHHhhhcceEE---EEEeccc-hhhhhhh--------ccccceecccCCCchhhhhhHHHHHHH-HHH---c
Confidence 3567889999999999987 3674222 2222222 458889999986543322333333332 223 3
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH---------HHhCCCC
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI---------LATAKIP 189 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~---------~~~~~~~ 189 (257)
-+|. +| |.+. . +.|--+..+...+.| |++||=| ++.++.+ .-.++++
T Consensus 106 ~vda--vH-PGYG---------------F--LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVp 161 (1176)
T KOG0369|consen 106 NVDA--VH-PGYG---------------F--LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVP 161 (1176)
T ss_pred CCCe--ec-CCcc---------------c--cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCC
Confidence 3444 34 3221 0 112122233444444 6789975 3333322 2223343
Q ss_pred CceeccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 190 PAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 190 p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++..--.|...-.+..+||+++|.++|.....++
T Consensus 162 --vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 162 --VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred --ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 3332223334447899999999999999999987
No 49
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.54 E-value=31 Score=28.99 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEecCCCHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCKK 178 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~ 178 (257)
+.+.. ..+-..|.++|+++|.+-..-.+... | .....++.++.+.+.+ .++...++....+.
T Consensus 17 s~e~~-~~i~~~L~~~GV~~IEvg~~~~~~~~-p---------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~ 79 (265)
T cd03174 17 STEDK-LEIAEALDEAGVDSIEVGSGASPKAV-P---------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKG 79 (265)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEeccCcCcccc-c---------------cCCCHHHHHHHHHhccCCcEEEEEccCchhh
Confidence 33433 44445577899887777654433111 1 1235678888888888 56666777665666
Q ss_pred HHHHHHhCCCCCceeccccCCCC--------C--------cHHHHHHHHHCCceEEEec
Q 025159 179 LGDILATAKIPPAANQVEMNPLW--------Q--------QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~--------~--------~~~~~~~~~~~gi~v~~~~ 221 (257)
++.+.+.. ++ .+++.+..-. + -.+.++++++.|+.+...-
T Consensus 80 i~~a~~~g-~~--~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 80 IERALEAG-VD--EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred HHHHHhCC-cC--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 77766543 33 4444443320 1 1467889999998876654
No 50
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=72.03 E-value=78 Score=28.73 Aligned_cols=171 Identities=19% Similarity=0.200 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHcCC-ceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEE---EeccC--CCCCChhhHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGY-RHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFI---ASKLW--CSDAHRELVVPALQK 110 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi-~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i---~tK~~--~~~~~~~~i~~~l~~ 110 (257)
.+.++-.+=+..|.+.|. +..|.+.. |.-..+.+++-+.. .+ +-..|-| ..+.. ..+.+.+.+...+++
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLStG-gdl~eiR~~ii~~s--~v--PvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~ 149 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLSTG-GDLHEIREWIIRNS--PV--PVGTVPIYQALEEVNGKVEDLTEDDFFDTVEK 149 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEecccC-CCHHHHHHHHHhcC--CC--CcCCchHHHHHHHHhcchhhCCHHHHHHHHHH
Confidence 566666777888999996 46677643 55444444443220 11 1110000 00001 234567777777777
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
..+ +-+|.+.||.- -.++.++.++++|++ .|+.+-.-.-+..++-...
T Consensus 150 qa~----~GVdfmTIHaG-----------------------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~--- 197 (432)
T COG0422 150 QAE----QGVDFMTIHAG-----------------------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH--- 197 (432)
T ss_pred HHH----hCCcEEEeehh-----------------------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC---
Confidence 776 45788999974 246788899999987 6776665455444433221
Q ss_pred ceeccccCCCCCc-HHHHHHHHHCCceEEEecCCCCCCCCCCCCC------ccChHHHHHHHHHhCC
Q 025159 191 AANQVEMNPLWQQ-NKLREFCKAKDIQLAAYAPLGARGTIWGSNR------VMECEVLKEIAEAKGK 250 (257)
Q Consensus 191 ~~~q~~~~~~~~~-~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~------~~~~~~~~~ia~~~~~ 250 (257)
.=|++... .++++.|+++++.+---..|-- |-+..... +....++.+.|.++|+
T Consensus 198 -----~ENply~~fd~lleI~k~yDvtlSLGDglRP-G~i~DA~D~aQ~~EL~tlgeL~krA~~~gV 258 (432)
T COG0422 198 -----KENPLYEHFDELLEIFKEYDVTLSLGDGLRP-GCIADANDEAQFAELITLGELTKRAWEAGV 258 (432)
T ss_pred -----CcCchhhhHHHHHHHHHHhCeeeeccCCCCC-CcccCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 11233222 5677778887777654333322 32221111 1223555666666664
No 51
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.77 E-value=80 Score=28.76 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHH-cCCceeeCCCCCCC-hH--HHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 38 GSETTKLAILEAMK-LGYRHFDTATLYQT-EQ--PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 38 ~~~~~~~~l~~Al~-~Gi~~~DtA~~Yg~-e~--~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
+.++..+.++.+.+ .|++.|=.-..-.. .. ..=+++++. - .++.|..-.. ..++++. ..+.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea-------~-~~~~l~vDaN-~~w~~~~----A~~~~~ 234 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEA-------F-PGARLRLDPN-GAWSLET----AIRLAK 234 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHh-------C-CCCcEEEeCC-CCcCHHH----HHHHHH
Confidence 55666677777775 69998743321111 11 112234433 1 2344444432 2234433 333334
Q ss_pred hhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCce
Q 025159 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAA 192 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~ 192 (257)
+|. - ++.++..|.. -++.+.+|++...+- +.|-|-++..++.++++...++ +
T Consensus 235 ~l~--~-~l~~iEeP~~----------------------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avd--i 287 (395)
T cd03323 235 ELE--G-VLAYLEDPCG----------------------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVD--I 287 (395)
T ss_pred hcC--c-CCCEEECCCC----------------------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCc--E
Confidence 443 2 6677777731 357778888876664 6677788889999998876655 7
Q ss_pred eccccCCCC---CcHHHHHHHHHCCceEEEecCC
Q 025159 193 NQVEMNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 193 ~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.|....... .-..+.+.|+++|+.++.++..
T Consensus 288 l~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 288 PLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred EeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 777765432 2368999999999999988765
No 52
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=71.76 E-value=10 Score=26.28 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=41.0
Q ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 157 MEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 157 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
++++++.|++. +|. .+..+.++....+..++--+.+. +....+...|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 46777888763 665 66667777777766666555554 234678999999999998764
No 53
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=71.62 E-value=49 Score=27.36 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEecCCCC
Q 025159 154 WEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 154 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++.+.+|.+...+. ..+=|-++.+.+.++++...++ ++|...+...- -..+.+.|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d--~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVD--ILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56677777776654 4456667788887777765554 77766554322 26789999999999999877654
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.52 E-value=53 Score=28.13 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=58.2
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC--
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS-- 175 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~-- 175 (257)
.++. .-...+-+.|.++|+++|++-+.........+.. .....+.|+.+....+ +..+..+++...
T Consensus 16 ~f~~-~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~----------~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 83 (266)
T cd07944 16 DFGD-EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKS----------AFCDDEFLRRLLGDSK-GNTKIAVMVDYGND 83 (266)
T ss_pred cCCH-HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCc----------cCCCHHHHHHHHhhhc-cCCEEEEEECCCCC
Confidence 4454 4555666779999999988876544321111110 1112456666666553 345656666554
Q ss_pred -HHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 176 -CKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 176 -~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
.+.++.+.+ ..++..-+....+.+..-.+.+++++++|+.+...
T Consensus 84 ~~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 84 DIDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CHHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 344444422 33442122222222222367899999999876643
No 55
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.39 E-value=64 Score=27.47 Aligned_cols=104 Identities=9% Similarity=-0.044 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
+++.+.+..++.++ -|.|+||+=. .|.. ....++.-+.+..+++.-.+ -|.|-+++++.+
T Consensus 24 ~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~----------------~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~ 83 (252)
T cd00740 24 DYDEALDVARQQVE-GGAQILDLNV--DYGG----------------LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVI 83 (252)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEECC--CCCC----------------CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHH
Confidence 55777777777765 5999999854 1210 00122333332333322122 388999999999
Q ss_pred HHHHHhCCCCCceeccccCCCC-CcHHHHHHHHHCCceEEEecCC
Q 025159 180 GDILATAKIPPAANQVEMNPLW-QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 180 ~~~~~~~~~~p~~~q~~~~~~~-~~~~~~~~~~~~gi~v~~~~pl 223 (257)
++.++.+.-.+.+|-+...... ....+++.++++|.+++.+.--
T Consensus 84 e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 84 EAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 9999975434456644432211 2357889999999999988543
No 56
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=69.73 E-value=29 Score=29.42 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHH----------------HH-HHHHHHhCCCCCCCCcEEEEeccCCCCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPL----------------GD-AIAEALSTGIIKSRDELFIASKLWCSDA 99 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~l----------------g~-~l~~~~~~~~~~~R~~l~i~tK~~~~~~ 99 (257)
.+.++..++.+.+-+.|+.+|-|.....+-..+ .. .|+.. ++ ...-++|+|=. .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~----tgkPvIlSTG~----s 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK----TGKPVILSTGM----S 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH----hCCcEEEECCC----C
Confidence 678899999999999999999776543211111 00 11111 11 12334554432 2
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
+.+.++++++...+.-+ -++.++|+...++. ..+ +--++.|..|++.=- --||.|.|+....
T Consensus 124 tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~-------~~e-------~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGN---EDLVLLHCVSSYPT-------PPE-------DVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp -HHHHHHHHHHHHHHCT-----EEEEEE-SSSS---------GG-------G--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCC-------ChH-------HcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 44667666666533333 59999999866432 111 122345555554333 4589999986543
No 57
>PRK13796 GTPase YqeH; Provisional
Probab=69.17 E-value=87 Score=28.16 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=82.5
Q ss_pred CccceeCCcCCC--------CChhHHHHHHHHHHHcC---CceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEec
Q 025159 25 PVLGLGTAASPF--------SGSETTKLAILEAMKLG---YRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 25 s~lglG~~~~~~--------~~~~~~~~~l~~Al~~G---i~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK 93 (257)
..+|-.|.++-. .+.++..+++...-+.- +-.+|..+.-++. -..+.+.. + .+.-++|.+|
T Consensus 34 ~~~C~RC~~l~hy~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~---~kpviLViNK 105 (365)
T PRK13796 34 EVYCQRCFRLKHYNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G---NNPVLLVGNK 105 (365)
T ss_pred CeEchhhhhhhccCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C---CCCEEEEEEc
Confidence 345655654421 45566666666665544 3456765544331 22233321 1 3567889999
Q ss_pred c--CCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 94 L--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 94 ~--~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
. .+.....+.+.+-++...+.+|....|++++..... ..++++++.+.++.+.+.+-.+|.
T Consensus 106 ~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g-----------------~gI~eL~~~I~~~~~~~~v~vvG~ 168 (365)
T PRK13796 106 ADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG-----------------HGIDELLEAIEKYREGRDVYVVGV 168 (365)
T ss_pred hhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC-----------------CCHHHHHHHHHHhcCCCeEEEEcC
Confidence 7 233333455666666667777876557777765422 237888888888877888999999
Q ss_pred cCCCHHHHHHHH
Q 025159 172 SNFSCKKLGDIL 183 (257)
Q Consensus 172 s~~~~~~l~~~~ 183 (257)
+|.....|--.+
T Consensus 169 ~NvGKSTLiN~L 180 (365)
T PRK13796 169 TNVGKSTLINRI 180 (365)
T ss_pred CCCcHHHHHHHH
Confidence 999977754443
No 58
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.90 E-value=96 Score=28.56 Aligned_cols=115 Identities=7% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC-cccEEEeecCCCCCCCCCCCC
Q 025159 61 TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE-YIDLYVIHWPVSSKPGSYEFP 139 (257)
Q Consensus 61 ~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d-~lDl~~lh~p~~~~~~~~~~~ 139 (257)
-.||.++.+-++|++..+.. +.+-++|.|-+-+.-. -+.+..-+++.-++.... .+.++.++.|.....
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~ii-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs------ 134 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAEVI-GDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS------ 134 (435)
T ss_pred eEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHhhh-hccHHHHHHHHHHhccCCCCCeEEEecCCCCccC------
Confidence 35788889999998876553 3455677776543211 123333333332333111 368888888754311
Q ss_pred CcccCCCCccHHHHHHHHHH-HH-------HcCCeeEEE-ecC-CC-HHHHHHHHHhCCCCCc
Q 025159 140 IKKEDFLPMDFKSVWEAMEE-CQ-------NLGYTKAIG-VSN-FS-CKKLGDILATAKIPPA 191 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~-l~-------~~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~p~ 191 (257)
.....+.++++|-+ +. +.++|--|| ..+ .+ .+++.++++..++++.
T Consensus 135 ------~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 135 ------HITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ------HHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 01123344444432 22 234566665 222 23 6789999999887753
No 59
>PRK07945 hypothetical protein; Provisional
Probab=68.73 E-value=85 Score=27.89 Aligned_cols=181 Identities=13% Similarity=0.055 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCC--------ChHHHHHH---HHHHHhCCCCCCCCcEEEEecc---CCCCCChhhH
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQ--------TEQPLGDA---IAEALSTGIIKSRDELFIASKL---WCSDAHRELV 104 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg--------~e~~lg~~---l~~~~~~~~~~~R~~l~i~tK~---~~~~~~~~~i 104 (257)
.....++++.|.+.|+..+=.++... +..-+-.- ++++ .+. ..+ +-|-.=+ +.++...+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l-~~k---y~~-I~Il~GiE~d~~~~g~~~~~ 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAEL-NEE---LAP-FRILTGIEVDILDDGSLDQE 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHH-HHh---cCC-ceEEEEeEecccCCCCcchh
Confidence 34578999999999999775554421 11111111 1111 001 122 2222221 1112212222
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec------------
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS------------ 172 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs------------ 172 (257)
++.|+. .||+ +.-+|+.... +..+..+.|.+..+.+++..||=-
T Consensus 185 ----~~~l~~--~D~v-IgSvH~~~~~-----------------~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~ 240 (335)
T PRK07945 185 ----PELLDR--LDVV-VASVHSKLRM-----------------DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTR 240 (335)
T ss_pred ----HHHHHh--CCEE-EEEeecCCCC-----------------CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCC
Confidence 333333 5665 6777875221 134566888888888887777732
Q ss_pred ---CCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhC
Q 025159 173 ---NFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKG 249 (257)
Q Consensus 173 ---~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~ 249 (257)
.++.+.+.+.+...++...+|-.... ..+...+++.|++.|+.++.-|=-.. +..+-......++|++.|
T Consensus 241 ~~~~~~~~~i~~a~~e~g~~lEINt~~~r-~~P~~~il~~a~e~G~~vtigSDAH~------p~~v~~~~~~~~~a~~~g 313 (335)
T PRK07945 241 PESKFDAEAVFAACREHGTAVEINSRPER-RDPPTRLLRLALDAGCLFSIDTDAHA------PGQLDWLGYGCERAEEAG 313 (335)
T ss_pred ChhhcCHHHHHHHHHHhCCEEEEeCCCCC-CCChHHHHHHHHHcCCeEEecCCCCC------hhhcchHHHHHHHHHHcC
Confidence 12223333444444454445532222 12346789999999998643321111 111222344677778888
Q ss_pred CCcccc
Q 025159 250 KTVAQV 255 (257)
Q Consensus 250 ~s~~qv 255 (257)
.++.+|
T Consensus 314 ~~~~~i 319 (335)
T PRK07945 314 VPADRI 319 (335)
T ss_pred CCHHHc
Confidence 776654
No 60
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=68.24 E-value=48 Score=28.76 Aligned_cols=150 Identities=14% Similarity=0.257 Sum_probs=87.2
Q ss_pred CCccceeCCcCCCCChhHHHHHHHHHH-HcCCceeeCCCCC----C-C-hHHHHHHH---HHHHhCCCCCCCCcEEEEec
Q 025159 24 MPVLGLGTAASPFSGSETTKLAILEAM-KLGYRHFDTATLY----Q-T-EQPLGDAI---AEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 24 vs~lglG~~~~~~~~~~~~~~~l~~Al-~~Gi~~~DtA~~Y----g-~-e~~lg~~l---~~~~~~~~~~~R~~l~i~tK 93 (257)
|-+++++-.+.-+-+.+.+.+.+++.+ ..+.+++|.-... + + ...+.++| +++..+|+ .| ||-
T Consensus 104 vgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk--~R---fiG-- 176 (342)
T KOG1576|consen 104 VGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGK--IR---FIG-- 176 (342)
T ss_pred eeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCc--ee---Eee--
Confidence 445666644433356777888888888 4588888864332 1 2 33445554 34433343 12 221
Q ss_pred cCCCCCChhhHHHHHHHHHHhhCCCcccEEE--eecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 94 LWCSDAHRELVVPALQKSLENLQLEYIDLYV--IHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 94 ~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~--lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
-..+.-+-+...+ +-+..++|.++ .|.- ......++-|..++.+ .+||
T Consensus 177 --itgypldvl~~~a-----e~~~G~~dvvlsY~ry~-------------------l~d~tLl~~~~~~~sk----~vgV 226 (342)
T KOG1576|consen 177 --ITGYPLDVLTECA-----ERGKGRLDVVLSYCRYT-------------------LNDNTLLRYLKRLKSK----GVGV 226 (342)
T ss_pred --ecccchHHHHHHH-----hcCCCceeeehhhhhhc-------------------cccHHHHHHHHHHHhc----CceE
Confidence 2233334343333 56777899988 4432 1234677788888754 5799
Q ss_pred cCCCHHHHHHHHHhCCCCCceeccccCCCCCc-----HHHHHHHHHCCceE
Q 025159 172 SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ-----NKLREFCKAKDIQL 217 (257)
Q Consensus 172 s~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~-----~~~~~~~~~~gi~v 217 (257)
.|-++..+--+ ...+.+ +++|..++ ....++|+++|+.+
T Consensus 227 i~AsalsmgLL-t~~gp~------~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 227 INASALSMGLL-TNQGPP------PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred EehhhHHHHHh-hcCCCC------CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 98886665554 434433 45565553 46789999999864
No 61
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=68.00 E-value=83 Score=27.46 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=93.7
Q ss_pred ccceeCCcCCC-----CChhHHHHHHHHHH-HcCCceeeCCCCCCC------hHHHHHHHHHHHhCCCCCCCCcEEEEec
Q 025159 26 VLGLGTAASPF-----SGSETTKLAILEAM-KLGYRHFDTATLYQT------EQPLGDAIAEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 26 ~lglG~~~~~~-----~~~~~~~~~l~~Al-~~Gi~~~DtA~~Yg~------e~~lg~~l~~~~~~~~~~~R~~l~i~tK 93 (257)
.|.+|.+.... .++++..+.+...+ ..|.+.+|.-.-|+. -..+-.+|+.+-+ .+.++.|+.-
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~-----~~p~l~vs~T 145 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQK-----EYPDLKISFT 145 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 44666665432 45666666666666 679999998766651 2566777777632 2345555555
Q ss_pred c--CCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 94 L--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 94 ~--~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
+ .+...++..+ .+-+..+.-|+ ++|.+-|---+..... +. ....+.+..+.+.++..=+.-+=+
T Consensus 146 lp~~p~gl~~~g~--~~l~~a~~~Gv-~~d~VNiMtmDyg~~~------~~----~~mg~~a~~aa~~~~~ql~~~~~~- 211 (294)
T cd06543 146 LPVLPTGLTPDGL--NVLEAAAANGV-DLDTVNIMTMDYGSSA------GS----QDMGAAAISAAESLHDQLKDLYPK- 211 (294)
T ss_pred cCCCCCCCChhHH--HHHHHHHHcCC-CcceeeeeeecCCCCC------Cc----ccHHHHHHHHHHHHHHHHHHHccC-
Confidence 5 3444433322 34445556665 2455444433221110 00 011344555555554421111111
Q ss_pred cCCCHHHHHHHHHhCCCCCceeccccCC--CCC--cHHHHHHHHHCCceEEEecCCCC
Q 025159 172 SNFSCKKLGDILATAKIPPAANQVEMNP--LWQ--QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 172 s~~~~~~l~~~~~~~~~~p~~~q~~~~~--~~~--~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++..+ +.....+.|.+=+..... +.. ...+.+|++++||+.+++..+..
T Consensus 212 --~s~~~---~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 212 --LSDAE---LWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred --CCHHH---HHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 33333 333345667666555432 121 26899999999999999998864
No 62
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=67.47 E-value=76 Score=26.83 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccC-CCCCcHHHHHHHHHCCceE
Q 025159 154 WEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMN-PLWQQNKLREFCKAKDIQL 217 (257)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~-~~~~~~~~~~~~~~~gi~v 217 (257)
|+.+.++++.-.+.-|..... +++.+.++++..+++-.+.-.-++ .-..-.++.+.|+++||++
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 344445555445555655543 577888888876555332211111 1112257889999988864
No 63
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=66.71 E-value=44 Score=27.50 Aligned_cols=68 Identities=3% Similarity=0.039 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH--cCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 150 FKSVWEAMEECQN--LGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 150 ~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.+.+...++.+++ .+. -|.+-+++++.++.+++. +.++..+...+.. ..++++.++++|.+++.+.--
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 3345555555554 233 488999999999999998 6665444433322 567999999999999998655
No 64
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=65.57 E-value=79 Score=28.88 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=86.3
Q ss_pred CC-ChHHHHHHHHHHHhCCCCCCC---CcEEEEeccCCC----------CCChhhHHHHHHHHHHhhCCCcccEEEeecC
Q 025159 63 YQ-TEQPLGDAIAEALSTGIIKSR---DELFIASKLWCS----------DAHRELVVPALQKSLENLQLEYIDLYVIHWP 128 (257)
Q Consensus 63 Yg-~e~~lg~~l~~~~~~~~~~~R---~~l~i~tK~~~~----------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p 128 (257)
+| .+..+++++.+++++|++ ++ ++++|..-+|-+ ++.++..+.++++.++..= .+|=++-...
T Consensus 79 ~g~~q~~~a~av~d~v~~g~~-p~~~~~~~~i~~~v~~~~~~~d~~~~~~~ny~at~~ai~~a~~~~p--~~~~~~~~~~ 155 (391)
T PRK13307 79 FGPAQAAVAKAVADAVEEGII-PKDKAEDLVIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFP--DVDKVLYEKD 155 (391)
T ss_pred cCHHHHHHHHHHHHHHHcCCC-ChhhcCcEEEEEEEEcCchhccHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHhhhh
Confidence 45 588899999999999886 54 578888888753 2345777777877777552 1332221111
Q ss_pred CCCCC------CCCCC-CCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEec---CCCHHHHHHHHHhCCCCCceecccc
Q 025159 129 VSSKP------GSYEF-PIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVS---NFSCKKLGDILATAKIPPAANQVEM 197 (257)
Q Consensus 129 ~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs---~~~~~~l~~~~~~~~~~p~~~q~~~ 197 (257)
....| ...+. |+-.--....+.+++++-++++.+.+ .+-.||.. .+.++.+.++.+...-.+...-+-
T Consensus 156 ~~~h~~~~~~~~~~~~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK- 234 (391)
T PRK13307 156 RALHPIMGFKVTRLWDPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLK- 234 (391)
T ss_pred cccCCccccchhhhcccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEec-
Confidence 11000 00111 11111112234778888888887652 23468854 556777777776532112222222
Q ss_pred CCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 198 NPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 198 ~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
..+...-+++.+.+.|...++.+..+
T Consensus 235 -~~Di~~~vv~~~a~aGAD~vTVH~ea 260 (391)
T PRK13307 235 -TLDTGNLEARMAADATADAVVISGLA 260 (391)
T ss_pred -ccChhhHHHHHHHhcCCCEEEEeccC
Confidence 22233333666777777777766654
No 65
>PRK14017 galactonate dehydratase; Provisional
Probab=64.28 E-value=1.1e+02 Score=27.58 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCC-----CCCChHHHH------HHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHH
Q 025159 38 GSETTKLAILEAMKLGYRHFDTAT-----LYQTEQPLG------DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~-----~Yg~e~~lg------~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~ 106 (257)
++++..+.+..+.+.|++.|=.-. .++.+..+. +++++.+ -+++.|..-.. ..++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~-------g~~~~l~vDaN-~~w~~~~--- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAV-------GPEIGIGVDFH-GRVHKPM--- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHh-------CCCCeEEEECC-CCCCHHH---
Confidence 567777888888899999885421 111111122 2233321 13444444432 2233332
Q ss_pred HHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHh
Q 025159 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILAT 185 (257)
Q Consensus 107 ~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~ 185 (257)
..+.++.|. .+++.++..|... +-++.+.+|++...+. ..|=|-++...+..+++.
T Consensus 193 -A~~~~~~l~--~~~~~~iEeP~~~--------------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~ 249 (382)
T PRK14017 193 -AKVLAKELE--PYRPMFIEEPVLP--------------------ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA 249 (382)
T ss_pred -HHHHHHhhc--ccCCCeEECCCCc--------------------CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc
Confidence 333334443 2466677777431 2246788888877664 667788899999999887
Q ss_pred CCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecC
Q 025159 186 AKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 186 ~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~p 222 (257)
..++ ++|...+... .-..+.+.|+++||.++.++.
T Consensus 250 ~a~d--~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 250 GGVD--IIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CCCC--eEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 6655 7777665443 236899999999999998764
No 66
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=63.83 E-value=78 Score=25.96 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=72.9
Q ss_pred CChhHHHHHHHHHHHcCCceeeCC----------CCCC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCCh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA----------~~Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~ 101 (257)
.++++..+..+.+.++|+..+|.- ..|| ..+.+-+.++...+. -.+-|..|+.......
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~------~~~~v~vk~r~~~~~~ 137 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA------VPIPVTVKIRLGWDDE 137 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh------cCCCEEEEEeeccCCc
Confidence 367888889999999999988764 3455 355566666655111 1145666763322111
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~ 180 (257)
+...+ +-+.|...|+ |.+.+|....... .. ....|+.+.++++.-.+--++..+. +++.+.
T Consensus 138 ~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~-----------~~---~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 138 EETLE-LAKALEDAGA---SALTVHGRTREQR-----------YS---GPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred hHHHH-HHHHHHHhCC---CEEEECCCCHHHc-----------CC---CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 12222 3334556675 5566776432110 00 0123566667777666766776665 677888
Q ss_pred HHHHhCCCC
Q 025159 181 DILATAKIP 189 (257)
Q Consensus 181 ~~~~~~~~~ 189 (257)
++++....+
T Consensus 200 ~~l~~~gad 208 (231)
T cd02801 200 RCLEQTGVD 208 (231)
T ss_pred HHHHhcCCC
Confidence 887764433
No 67
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=63.66 E-value=1.2e+02 Score=27.56 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~ 141 (257)
.||.+..+-+++++..+.. +.+-++|.|-+-+.-. .+.+..-+++.-++.+ +.++.+|.|.....
T Consensus 68 V~Gg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~i-GdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~-------- 132 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF---PPKAIFVYSTCPTGLI-GDDIEAVAKEASKELG---IPVIPVNCEGFRGV-------- 132 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC---CCCEEEEECCCchhhh-ccCHHHHHHHHHHhhC---CCEEEEeCCCeeCC--------
Confidence 4678889999998876553 2345667766543211 1334433444333444 68999998754321
Q ss_pred ccCCCCccHHHHHHHHHHHH---------HcCCeeEEEecCC--CHHHHHHHHHhCCCCCceec--------------cc
Q 025159 142 KEDFLPMDFKSVWEAMEECQ---------NLGYTKAIGVSNF--SCKKLGDILATAKIPPAANQ--------------VE 196 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q--------------~~ 196 (257)
......+.++++|-+.. +.+.|--||..++ +.+++.++++..++++...- ..
T Consensus 133 ---~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~ 209 (406)
T cd01967 133 ---SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAK 209 (406)
T ss_pred ---cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCC
Confidence 01122445666655433 3456888898765 45788999998876532211 11
Q ss_pred cCCC-CCc--HHHHH-HHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCC
Q 025159 197 MNPL-WQQ--NKLRE-FCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (257)
Q Consensus 197 ~~~~-~~~--~~~~~-~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~ 250 (257)
+|+. +.. ....+ ..++.|++++.-.|.+- --...-++++++-+|+
T Consensus 210 ~niv~~~~~~~~~a~~L~~r~GiP~~~~~p~G~---------~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 210 LNLVHCSRSMNYLAREMEERYGIPYMEVNFYGF---------EDTSESLRKIAKFFGD 258 (406)
T ss_pred EEEEEChHHHHHHHHHHHHhhCCCEEEecCCcH---------HHHHHHHHHHHHHhCC
Confidence 1111 111 12232 34467999876556542 1245677888887776
No 68
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=62.95 E-value=92 Score=26.21 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=60.0
Q ss_pred HHHHHHHHHH-----HHHcCCeeEEEecCCC----H---HHHHHHHHhCC-CCC-ceeccccCCCCCc-----HHHHHHH
Q 025159 150 FKSVWEAMEE-----CQNLGYTKAIGVSNFS----C---KKLGDILATAK-IPP-AANQVEMNPLWQQ-----NKLREFC 210 (257)
Q Consensus 150 ~~~~~~~l~~-----l~~~G~ir~iGvs~~~----~---~~l~~~~~~~~-~~p-~~~q~~~~~~~~~-----~~~~~~~ 210 (257)
....|+.|.. ..+.|.--+++|.-|. + .+++++..... ... .+-.+.++....+ ..-++.+
T Consensus 44 ~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA 123 (254)
T COG1099 44 YLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELA 123 (254)
T ss_pred HHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHH
Confidence 4455665544 3567877778777664 2 22333333222 111 2222333332222 3558899
Q ss_pred HHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccccC
Q 025159 211 KAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQVLI 257 (257)
Q Consensus 211 ~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qval 257 (257)
++.+++++.+.|-.. ....-..+-+++.++|+.+.++.+
T Consensus 124 ~e~dvPviVHTPr~n--------K~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 124 RELDVPVIVHTPRRN--------KKEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred HHcCCcEEEeCCCCc--------chhHHHHHHHHHHHcCCChhheeh
Confidence 999999999999864 233347778888999998887753
No 69
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=62.89 E-value=1.3e+02 Score=27.99 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=65.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC----cccEEEeecCCCCCCCCC
Q 025159 61 TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE----YIDLYVIHWPVSSKPGSY 136 (257)
Q Consensus 61 ~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d----~lDl~~lh~p~~~~~~~~ 136 (257)
-.||.++.+-++|++..+... +-+-++|.|-+.+.-. .+.+..-+++.-+++.-+ .+.++.++.|.....
T Consensus 69 vVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs--- 142 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTETI-GDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS--- 142 (457)
T ss_pred eEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHHhh-cCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc---
Confidence 357889999999998865431 1245777777643211 133333333332222111 368899998865321
Q ss_pred CCCCcccCCCCccHHHHHHHHHHHH------HcCCeeEEEecC--CCHHHHHHHHHhCCCCCce
Q 025159 137 EFPIKKEDFLPMDFKSVWEAMEECQ------NLGYTKAIGVSN--FSCKKLGDILATAKIPPAA 192 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~l~------~~G~ir~iGvs~--~~~~~l~~~~~~~~~~p~~ 192 (257)
.....+.+++++.+.. .+++|--||-.+ -+.+.++++++..++++.+
T Consensus 143 ---------~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 143 ---------QVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred ---------HHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 0122444554444322 246688786443 2566788889988877433
No 70
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.78 E-value=1.1e+02 Score=27.18 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHh
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLEN 114 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~ 114 (257)
+.++..+.+..+.+.|++.|=.--... .....=+++|+. --+++.|..-.. ..++++.. .+.++.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~-------~g~~~~l~vDaN-~~~~~~~A----~~~~~~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA-------VGDGVGLMVDYN-QSLTVPEA----IERGQA 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh-------hCCCCEEEEeCC-CCcCHHHH----HHHHHH
Confidence 456666777777788988663322111 122223344443 124555555543 23344432 222333
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCCCCcee
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKIPPAAN 193 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~~ 193 (257)
|. .+++.++..|... +-++.+.+|++.-.| -..|=+.+++..+..+++...++ ++
T Consensus 209 l~--~~~i~~iEeP~~~--------------------~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d--~i 264 (355)
T cd03321 209 LD--QEGLTWIEEPTLQ--------------------HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACD--LV 264 (355)
T ss_pred HH--cCCCCEEECCCCC--------------------cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCC--eE
Confidence 32 2366777777431 235677777776543 35677778999999998876554 77
Q ss_pred ccccCCCCC---cHHHHHHHHHCCceEEEec
Q 025159 194 QVEMNPLWQ---QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 194 q~~~~~~~~---~~~~~~~~~~~gi~v~~~~ 221 (257)
|...+-+.- -..+.+.|+++|+.++.+.
T Consensus 265 ~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 265 MPDLMKIGGVTGWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred ecCHhhhCCHHHHHHHHHHHHHcCCeecccc
Confidence 766654332 2678999999999987553
No 71
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=62.74 E-value=78 Score=28.22 Aligned_cols=121 Identities=19% Similarity=0.247 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCceeeCCCCC---------C---ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLY---------Q---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Y---------g---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.- | +..-+-++++.+.+.|. +.+-+-.=++-+..+.+.+++.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~----~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF----ENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CEEEEEeecCCCCCCHHHHHHHHHH
Confidence 455566667788877322211 1 23334445554422232 1121222223345677888888877
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHH-HHHHHHHHHcCCeeEEEecCCCH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSV-WEAMEECQNLGYTKAIGVSNFSC 176 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~ 176 (257)
.++ ++.+++.++.+.-- +.++ ... .... .. ..++. ..+.+.|.+.|.. .+++|||..
T Consensus 174 ~~~-l~~~~is~y~L~~~-~gT~---l~~-~~~~-~~-~~~~~~~~~~~~l~~~Gy~-~yeis~fa~ 231 (350)
T PRK08446 174 AKE-LPINHLSAYSLTIE-ENTP---FFE-KNHK-KK-DDENLAKFFIEQLEELGFK-QYEISNFGK 231 (350)
T ss_pred HHh-cCCCEEEeccceec-CCCh---hHH-hhhc-CC-CHHHHHHHHHHHHHHCCCc-EEEeehhhC
Confidence 654 99998888887632 1111 000 0000 00 11223 3445667778986 599999975
No 72
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=62.22 E-value=66 Score=29.32 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCceeeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Yg------------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.-. +..-+-++++.+.+.|. +.+-+--=.+-+..+.+.+++.++.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~----~~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI----ENFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 3455555577888775443322 22233344444422232 1122222223345577888888887
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHH---HHH-HHHHHHHHcCCeeEEEecCCCHH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFK---SVW-EAMEECQNLGYTKAIGVSNFSCK 177 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~l~~l~~~G~ir~iGvs~~~~~ 177 (257)
.++ |+.+++.++.+.- .+.++- ............+.+ +.+ .+.+.|.+.|.. ..++|||...
T Consensus 191 ~~~-l~p~~is~y~L~~-~pgT~l--~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~~ 256 (400)
T PRK07379 191 AIA-LNPTHLSCYDLVL-EPGTAF--GKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAKP 256 (400)
T ss_pred HHc-CCCCEEEEeccee-cCCchh--HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheECC
Confidence 764 8999998887763 221110 000000000011111 222 356668889997 4899999743
No 73
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=61.50 E-value=26 Score=25.15 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
+-.+|...++.|++. +|. .+..+.++....+..++-.+.+. +....+..+|++++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-LGS-----KRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-EcH-----HHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 346688888899884 665 56666667677776666555432 33478999999999999876
No 74
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=61.21 E-value=78 Score=26.22 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Q 025159 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 182 (257)
.....+-+.|.++|+++|++- .|... ....+.++.+.+.... .+..+++......++..
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~----------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~ 72 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS----------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERA 72 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS----------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC----------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHH
Confidence 445556667999999888877 33211 1123444555554445 45566777777777775
Q ss_pred HH---hCCCCCceeccccCCCC--------------CcHHHHHHHHHCCceE
Q 025159 183 LA---TAKIPPAANQVEMNPLW--------------QQNKLREFCKAKDIQL 217 (257)
Q Consensus 183 ~~---~~~~~p~~~q~~~~~~~--------------~~~~~~~~~~~~gi~v 217 (257)
++ .+.++..-+-.+.|..+ .-.+.+.++++.|..+
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44 33444222222333211 1156799999999999
No 75
>PRK00208 thiG thiazole synthase; Reviewed
Probab=60.66 E-value=1.1e+02 Score=26.16 Aligned_cols=165 Identities=16% Similarity=0.048 Sum_probs=97.2
Q ss_pred CCccceeCCcCCCCChhHHHHHHHHHH-HcCCceeeCCCCC----CChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC
Q 025159 24 MPVLGLGTAASPFSGSETTKLAILEAM-KLGYRHFDTATLY----QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD 98 (257)
Q Consensus 24 vs~lglG~~~~~~~~~~~~~~~l~~Al-~~Gi~~~DtA~~Y----g~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~ 98 (257)
-|+|-+||..+.+ .+.+..|+ .+|...+=.|--. ..+ ...+... ++..+.+.-.. ...
T Consensus 10 ~SRl~~Gtgky~s------~~~~~~ai~asg~~ivTvalrR~~~~~~~---~~~~~~i-------~~~~~~~lpNT-aG~ 72 (250)
T PRK00208 10 SSRLLLGTGKYPS------PQVMQEAIEASGAEIVTVALRRVNLGQGG---DNLLDLL-------PPLGVTLLPNT-AGC 72 (250)
T ss_pred eccceEecCCCCC------HHHHHHHHHHhCCCeEEEEEEeecCCCCc---chHHhhc-------cccCCEECCCC-CCC
Confidence 4789999999753 44555555 3465544322211 011 1222211 33333222111 224
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Q 025159 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKK 178 (257)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 178 (257)
.+.++-.+..+-..+.++++.|-+=.+.++.... -++.+++++.++|.++|.+- +=+|+-++..
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~ll---------------pd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ 136 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDDKTLL---------------PDPIETLKAAEILVKEGFVV-LPYCTDDPVL 136 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCC---------------cCHHHHHHHHHHHHHCCCEE-EEEeCCCHHH
Confidence 5667777777888888899888887777654432 24789999999999999984 5688889888
Q ss_pred HHHHHHhCC--CCC--ceeccccCCCCCcHHHHHHHHH-CCceEEEecCC
Q 025159 179 LGDILATAK--IPP--AANQVEMNPLWQQNKLREFCKA-KDIQLAAYAPL 223 (257)
Q Consensus 179 l~~~~~~~~--~~p--~~~q~~~~~~~~~~~~~~~~~~-~gi~v~~~~pl 223 (257)
..++.+..- +.| ..+-..-.+. ..+.++..++ .+++|++-.-+
T Consensus 137 ak~l~~~G~~~vmPlg~pIGsg~gi~--~~~~i~~i~e~~~vpVIveaGI 184 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIGSGLGLL--NPYNLRIIIEQADVPVIVDAGI 184 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCC--CHHHHHHHHHhcCCeEEEeCCC
Confidence 888877522 222 1111111111 2456666666 48888886444
No 76
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=60.22 E-value=1.3e+02 Score=26.86 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHH----------------HHHHHHHHhCCCCCCCCcEEEEeccCCCCCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPL----------------GDAIAEALSTGIIKSRDELFIASKLWCSDAH 100 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~l----------------g~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~ 100 (257)
++.+...++.+.|-+.|+-+|-|...+.+-..+ ..-+=++++.. -+.+.++|-.. +
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~----~kPiIlSTGma----~ 158 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKK----GKPIILSTGMA----T 158 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhc----CCCEEEEcccc----c
Confidence 677788899999999999999877665421111 11111122111 13455555432 3
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 180 (257)
-+.+.++++.-.+ -|. .|+.++|+...++. +.+ +--+++|..|++.= ---||+|.|+..-+.
T Consensus 159 ~~ei~~av~~~r~-~g~--~~i~LLhC~s~YPa-------p~e-------d~NL~~i~~l~~~F-n~~vGlSDHT~g~~a 220 (347)
T COG2089 159 IEEIEEAVAILRE-NGN--PDIALLHCTSAYPA-------PFE-------DVNLKAIPKLAEAF-NAIVGLSDHTLGILA 220 (347)
T ss_pred HHHHHHHHHHHHh-cCC--CCeEEEEecCCCCC-------CHH-------HhhHHHHHHHHHHh-CCccccccCccchhH
Confidence 3666666665444 343 39999999765432 111 12344455555443 335999999977655
Q ss_pred HHHH
Q 025159 181 DILA 184 (257)
Q Consensus 181 ~~~~ 184 (257)
-+..
T Consensus 221 ~l~A 224 (347)
T COG2089 221 PLAA 224 (347)
T ss_pred HHHH
Confidence 5544
No 77
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.85 E-value=1.4e+02 Score=27.35 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC-CCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg-~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.||.++.+-+++++..+.. +.+-++|.|-+-+.-. .+.+..-+++.-++.- ...+.++.+|.|.....
T Consensus 62 VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~eiI-GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~------- 130 (417)
T cd01966 62 ILGGGENLEEALDTLAERA---KPKVIGLLSTGLTETR-GEDIAGALKQFRAEHPELADVPVVYVSTPDFEGS------- 130 (417)
T ss_pred EECCHHHHHHHHHHHHHhc---CCCEEEEECCCccccc-ccCHHHHHHHHHhhccccCCCeEEEecCCCCCCc-------
Confidence 4788889999998876543 3456777777654322 1334444443333310 01367888888754321
Q ss_pred cccCCCCccHHHHHHHHHH-H--------HHcCCeeEEEecCC---CHHHHHHHHHhCCCCCc
Q 025159 141 KKEDFLPMDFKSVWEAMEE-C--------QNLGYTKAIGVSNF---SCKKLGDILATAKIPPA 191 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~-l--------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~p~ 191 (257)
.....+.++++|.+ + ++.++|--||-++. +.+++.++++..++++.
T Consensus 131 -----~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 131 -----LEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred -----HHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 11223444444432 2 23566888875544 45667888888877753
No 78
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.62 E-value=34 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 153 VWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..+.+++++++..=-.||..+- ++++++++.+... + +-.+| +...+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~-----FivSP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-R-----FIVSP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-C-----EEECC-CCCHHHHHHHHHcCCCEeC
Confidence 3455555554433245888776 7888888877653 2 12223 2336899999999998874
No 79
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=59.53 E-value=1.6e+02 Score=27.74 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEecC----C
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSN----F 174 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~----~ 174 (257)
+++.+.+.++...++.|+.. +.+.+.+.. .+.+.+.+-+++++++| .-..++++. .
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~----------------~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i 283 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGF---FILADEEPT----------------INRKKFQEFCEEIIARNPISVTWGINTRVTDI 283 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCE---EEEEecccc----------------cCHHHHHHHHHHHHhcCCCCeEEEEecccccc
Confidence 67888888888888888654 333332211 12344555566677776 322344432 1
Q ss_pred --CHHHHHHHHHhCCCCCceeccccCCCCC--------------cHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccCh
Q 025159 175 --SCKKLGDILATAKIPPAANQVEMNPLWQ--------------QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMEC 238 (257)
Q Consensus 175 --~~~~l~~~~~~~~~~p~~~q~~~~~~~~--------------~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~ 238 (257)
+.+.+ +++..+++. .+.+.+-..+. ..+.++.|+++||.+.+.--++. +.....+.
T Consensus 284 ~~d~ell-~~l~~aG~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~-----P~et~e~~ 355 (497)
T TIGR02026 284 VRDADIL-HLYRRAGLV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF-----ENETDETF 355 (497)
T ss_pred cCCHHHH-HHHHHhCCc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC-----CCCCHHHH
Confidence 33333 344444432 22222211111 14678899999998765544433 11222233
Q ss_pred HHHHHHHHHhCCCc
Q 025159 239 EVLKEIAEAKGKTV 252 (257)
Q Consensus 239 ~~~~~ia~~~~~s~ 252 (257)
...-+.+.+++.+.
T Consensus 356 ~~t~~~~~~l~~~~ 369 (497)
T TIGR02026 356 EETYRQLLDWDPDQ 369 (497)
T ss_pred HHHHHHHHHcCCCc
Confidence 33444555555443
No 80
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=59.30 E-value=1.2e+02 Score=26.50 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
.+.++..+.+..+.+.|++.+..+..-. -..-+-+.++..-+.. .-.++.|+|... .+.+. -..|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~-------ll~~~-~~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGY-------LLARR-AAALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCch-------hHHHH-HHHHHHc
Confidence 6778899999999899998776543211 1222444555441111 123566766632 12222 2345555
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC----eeEEEecCCCHHHHHHHHHhCC-CCC
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY----TKAIGVSNFSCKKLGDILATAK-IPP 190 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~~-~~p 190 (257)
|++.+- +-||..+...... . ......+.++++++.+++.|. +..+.+.+.+.+++.++++.+. ...
T Consensus 118 gl~~i~-ISlds~~~e~~~~---i-----~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERFKA---I-----TGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred CCCEEE-EEeccCCHHHhcc---C-----CCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 655432 3334432211000 0 001247889999999999885 3344444566667766666543 222
Q ss_pred ceeccccCCCCC-----------cHHHHHHHHHCCce
Q 025159 191 AANQVEMNPLWQ-----------QNKLREFCKAKDIQ 216 (257)
Q Consensus 191 ~~~q~~~~~~~~-----------~~~~~~~~~~~gi~ 216 (257)
.+.-++|.+... ..++++..+++++.
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWT 225 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCc
Confidence 233333333221 14677777777544
No 81
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=58.90 E-value=97 Score=26.70 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHHHHhhCC--------------------------CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHH
Q 025159 99 AHRELVVPALQKSLENLQL--------------------------EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKS 152 (257)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~--------------------------d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
.....+++.++..|++|++ ...|++.|.-|-. ...+.+.+-
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS-------------GLDPVN~el 168 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS-------------GLDPVNVEL 168 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc-------------CCChhhHHH
Confidence 4557888888888888865 1234444444422 233456666
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHh
Q 025159 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILAT 185 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 185 (257)
.-++..+++++|.. |=+|+|..++++++++.
T Consensus 169 Lk~~I~~lk~~Gat--IifSsH~Me~vEeLCD~ 199 (300)
T COG4152 169 LKDAIFELKEEGAT--IIFSSHRMEHVEELCDR 199 (300)
T ss_pred HHHHHHHHHhcCCE--EEEecchHHHHHHHhhh
Confidence 77888899999996 88999999999999774
No 82
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=58.89 E-value=35 Score=28.15 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 153 VWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..+.+++++++..=-.||..+- ++++++++.+... ++. .+|. ...+++++|+++|+.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi-----vsP~-~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI-----VSPG-LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE-----ECCC-CCHHHHHHHHHcCCcEEC
Confidence 3445555555433245888776 7888888877543 211 2232 245899999999998885
No 83
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=58.82 E-value=49 Score=27.22 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-CCCHHHHHHHHHhCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIP 189 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~ 189 (257)
.+..+|.|++=+++...... ..+. +..+.+.... .+.++.+||. |-+++.+.++.+..++
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR----------------~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~- 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKR----------------HQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSI- 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCcc----------------cCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCC-
Confidence 45669999998874332111 1123 3334444433 3568889996 8889999998886554
Q ss_pred Cceecccc
Q 025159 190 PAANQVEM 197 (257)
Q Consensus 190 p~~~q~~~ 197 (257)
.++|+.-
T Consensus 77 -d~vQLHG 83 (207)
T PRK13958 77 -NTIQLHG 83 (207)
T ss_pred -CEEEECC
Confidence 4888753
No 84
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=58.61 E-value=1.6e+02 Score=27.63 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=66.7
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHH
Q 025159 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (257)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~ 106 (257)
|++--+++.+.+-+.+++.+..+.|.+.|-.++.-| +...+|+.++- |..+++ .|+++.|++.+++... +--
T Consensus 193 FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y-~~tn~~-~~e~v~Is~HcHND~G----~a~ 266 (560)
T KOG2367|consen 193 FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEY-LKTNTP-GREKVCISTHCHNDLG----CAT 266 (560)
T ss_pred ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHH-HHccCC-CceeEEEEEeecCCcc----HHH
Confidence 444455557888899999999999999998888877 67778888774 444554 7999999999876422 111
Q ss_pred HHHHHHHhhCCCcccEEEeecCC
Q 025159 107 ALQKSLENLQLEYIDLYVIHWPV 129 (257)
Q Consensus 107 ~l~~sL~~Lg~d~lDl~~lh~p~ 129 (257)
+--.+=..-|-+++|.-+...-+
T Consensus 267 Ant~~g~~AGA~~VE~~i~GiGE 289 (560)
T KOG2367|consen 267 ANTELGLLAGARQVEVTINGIGE 289 (560)
T ss_pred HHHHHHhhcCcceEEEEeecccc
Confidence 11122223477899998877643
No 85
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=58.58 E-value=57 Score=30.25 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCceeeCCCCCC------------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLYQ------------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Yg------------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.-. +..-+-++++.+.+.|. +.+-+.-=.+.+..+.+.+.+.++.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~----~~v~~dli~GlPgqt~e~~~~tl~~ 227 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGF----ESINFDLIYGLPHQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC----CcEEEeEEEeCCCCCHHHHHHHHHH
Confidence 4566666677998885443211 33344455655533343 1122222223345677888888888
Q ss_pred HHHhhCCCcccEEEee-cCCCCCCCCCCCCCcccCCCC--ccHHHHHHHHHHHHHcCCeeEEEecCCCHH
Q 025159 111 SLENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLP--MDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 177 (257)
.+ +++.+.+.+|.+- .|....... ..+...... ...+....+.+.|.+.|..+ +|+++|...
T Consensus 228 ~~-~l~p~~i~~y~l~~~p~~~~~~~---~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far~ 292 (453)
T PRK13347 228 VI-ALSPDRIAVFGYAHVPSRRKNQR---LIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFALP 292 (453)
T ss_pred HH-hcCCCEEEEeccccccchhhHHh---cCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeCC
Confidence 77 4999999988763 332110000 000000001 11222334556788899875 999999753
No 86
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=58.02 E-value=15 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=23.8
Q ss_pred ccCCCCCCCCCceecCCCCCcCCccceeCCc
Q 025159 3 QGSEMGSISIPDVPLKSSNRRMPVLGLGTAA 33 (257)
Q Consensus 3 ~~~~~~~~~m~~~~l~~~~~~vs~lglG~~~ 33 (257)
+|.+.+......+.|+.+|+.||.+-+|+..
T Consensus 6 qPLaqalPfs~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 6 QPLAQALPFSLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred CchhhhCCccccccccccccCCceeeecchH
Confidence 4455556666777788888999999999876
No 87
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=57.79 E-value=76 Score=27.53 Aligned_cols=98 Identities=17% Similarity=0.087 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Q 025159 103 LVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 103 ~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 182 (257)
.-+..+-+.|.++|+++|.+-..+.|..... ..+.++.+..+.+...++...+. .+...++.+
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~----------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A 88 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKWVPQ----------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAA 88 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCcccccc----------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHH
Confidence 3445566779999999888864443421111 12235666666554445555554 477778887
Q ss_pred HHhCCCCCceeccccCCC-------CC-c------HHHHHHHHHCCceEE
Q 025159 183 LATAKIPPAANQVEMNPL-------WQ-Q------NKLREFCKAKDIQLA 218 (257)
Q Consensus 183 ~~~~~~~p~~~q~~~~~~-------~~-~------~~~~~~~~~~gi~v~ 218 (257)
++.. ++-...-++.|.. .. + .+.+++++++|+.+.
T Consensus 89 ~~~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 89 LAAG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred HHcC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 7653 2211111122211 11 1 468999999999885
No 88
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.56 E-value=20 Score=28.57 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcC-CeeEEEecCCC--HHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 150 FKSVWEAMEECQNLG-YTKAIGVSNFS--CKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
..+++++|.++++.| +|..+|..|.. ...+.+++. ++ +.++.|+....-...+..+++.|+.++.-
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~--i~~~~~~~~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VD--IKIYPYDSEEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----E--EEEEEESSHHHHHHHHHHHHHTT--EEEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---Cc--eEEEEECCHHHHHHHHHHHHHcCCcEEEC
Confidence 568889999988766 56666666654 455666553 33 66566654333357788888899998874
No 89
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=57.39 E-value=1.1e+02 Score=25.21 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-CCCHHHHHHHHHhCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIP 189 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~ 189 (257)
.+..+|.|++=+++.....+ ..+. +..+.+.... .+.++.+||. |-+++.+.++++...++
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R----------------~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d 79 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPR----------------YVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLD 79 (210)
T ss_pred HHHHcCCCEEEEccCCCCCC----------------cCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34568999988864322111 1112 3334333332 3568889987 66888898988866654
Q ss_pred Cceecccc
Q 025159 190 PAANQVEM 197 (257)
Q Consensus 190 p~~~q~~~ 197 (257)
++|+.-
T Consensus 80 --~vQLHg 85 (210)
T PRK01222 80 --LLQLHG 85 (210)
T ss_pred --EEEECC
Confidence 888754
No 90
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=57.28 E-value=1.2e+02 Score=25.77 Aligned_cols=108 Identities=17% Similarity=0.055 Sum_probs=72.5
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHH
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 177 (257)
.++.++-.+..+-..+.++++.|-+=.+.++....+ ++.+++++.++|.++|.+- +=+|+-++.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp---------------d~~~tv~aa~~L~~~Gf~v-lpyc~dd~~ 135 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLP---------------DPIETLKAAEILVKEGFTV-LPYCTDDPV 135 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCcccccc---------------CHHHHHHHHHHHHHCCCEE-EEEeCCCHH
Confidence 456677777778888888999888877776644332 4789999999999999984 568888988
Q ss_pred HHHHHHHhCC--CCC--ceeccccCCCCCcHHHHHHHHH-CCceEEEecCC
Q 025159 178 KLGDILATAK--IPP--AANQVEMNPLWQQNKLREFCKA-KDIQLAAYAPL 223 (257)
Q Consensus 178 ~l~~~~~~~~--~~p--~~~q~~~~~~~~~~~~~~~~~~-~gi~v~~~~pl 223 (257)
..+++.+..- +.| ..+-....+. ..+.++..++ .+++|++-.-+
T Consensus 136 ~ar~l~~~G~~~vmPlg~pIGsg~Gi~--~~~~I~~I~e~~~vpVI~egGI 184 (248)
T cd04728 136 LAKRLEDAGCAAVMPLGSPIGSGQGLL--NPYNLRIIIERADVPVIVDAGI 184 (248)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCCCCCC--CHHHHHHHHHhCCCcEEEeCCC
Confidence 8888877522 222 1111111111 2456666665 58888876433
No 91
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=56.93 E-value=1.1e+02 Score=25.37 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE 118 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d 118 (257)
.....+++..|.+.|+..+=.++............+.. .+=+++...-+. ..+++.+..-++ +.. +
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~~~~~~~----~~~-~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSKLRGLVG----KFR-K 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHHHHHHHH----hcc-C
Confidence 35689999999999999775555432110001111111 111122222221 123344333333 321 3
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-------CHHHHHHHHHhCCCCCc
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-------SCKKLGDILATAKIPPA 191 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~p~ 191 (257)
.+|++.+| |.. +.+. ....+.+.|--||--.. .. .+.++....++.
T Consensus 81 ~~d~v~v~-~~~--------------------~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~-~~~~~a~~~gv~-- 133 (237)
T PRK00912 81 KVDVLAVH-GGD--------------------EKVN---RAACENPRVDILSHPYTKRKDSGINH-VLAKEAARNNVA-- 133 (237)
T ss_pred cccEEEEe-CCC--------------------HHHH---HHHHccCCCcEEeCccccCCCCCcCH-HHHHHHHHCCeE--
Confidence 57888888 311 1221 34677888777775432 22 222333333333
Q ss_pred eeccccCCCC------------CcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcccc
Q 025159 192 ANQVEMNPLW------------QQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 192 ~~q~~~~~~~------------~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~qv 255 (257)
+.++++++. ....++..|+++|++++.-|==.. +..+-....+..+++..|.+..++
T Consensus 134 -lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~ 202 (237)
T PRK00912 134 -IEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEA 202 (237)
T ss_pred -EEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHH
Confidence 333443321 114789999999998876442111 112224466677777777665543
No 92
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=56.65 E-value=1.1e+02 Score=28.22 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCceeeCCCCC---------C---ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLY---------Q---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Y---------g---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.- + +..-+-++++.+.+.++ ..+-+..=++.+..+.+.+.+.++.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~----~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGF----PILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 455555556799877433221 1 23334445555422232 1121222234456778889998888
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSC 176 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 176 (257)
.++ |+.+.+.++.+.-.....-+....+ ......+-.-.+.+.|.+.|..+ +++++|..
T Consensus 217 ~~~-l~~~~is~y~L~~~~~T~l~~~~~~-----~~~~~~~m~~~~~~~L~~~Gy~~-yei~~far 275 (430)
T PRK08208 217 ALV-YRPEELFLYPLYVRPLTGLGRRARA-----WDDQRLSLYRLARDLLLEAGYTQ-TSMRMFRR 275 (430)
T ss_pred HHh-CCCCEEEEccccccCCCccchhcCC-----CHHHHHHHHHHHHHHHHHcCCeE-Eeecceec
Confidence 874 8998888887653211100000000 00111111224556678889865 99999975
No 93
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=56.55 E-value=78 Score=23.79 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCcee--------eCCCCCCC------hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHH
Q 025159 43 KLAILEAMKLGYRHF--------DTATLYQT------EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPAL 108 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~--------DtA~~Yg~------e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l 108 (257)
...+..|+..|+.-+ |+...+|| -+++.+.|.++ ++ .++.+....-.-...-.-.++...+
T Consensus 43 ~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~el---gi--e~eRv~~~wiSa~E~ekf~e~~~ef 117 (132)
T COG1908 43 PEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKEL---GI--EPERVRVLWISAAEGEKFAETINEF 117 (132)
T ss_pred HHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHh---CC--CcceEEEEEEehhhHHHHHHHHHHH
Confidence 567777887776533 66666675 34667777777 77 5565544332222111123344445
Q ss_pred HHHHHhhCCC
Q 025159 109 QKSLENLQLE 118 (257)
Q Consensus 109 ~~sL~~Lg~d 118 (257)
-+-+++||..
T Consensus 118 v~~i~~lGpn 127 (132)
T COG1908 118 VERIKELGPN 127 (132)
T ss_pred HHHHHHhCCC
Confidence 5556666643
No 94
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=56.49 E-value=70 Score=28.38 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 154 WEAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 154 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++.|.++++.-.+ -+.|=|-++...+.++++...++ ++|+..+.+.--.++++.|+++||.++..+.+.+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~d--vi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~es 243 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAAD--VAVLKVAPLGGVRAALDIAEQIGLPVVVSSALDT 243 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCC--EEEeCcchhCCHHHHHHHHHHcCCcEEEeCCccc
Confidence 5667777665443 34566667788888887765555 7777776655446788899999999998877654
No 95
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=56.26 E-value=75 Score=28.59 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCceeeCCCCCCC------------hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLYQT------------EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Yg~------------e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.-.+ ..-+-++++.+.+.+. +.+-+--=.+.+..+.+.+++.++.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~----~~v~~Dli~GlPgqt~~~~~~~l~~ 178 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGF----SNLSIDLIYGLPTQSLSDFIVDLHQ 178 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 45566667889998854433222 2222334443311121 1222221123455678889999988
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCc--cHHHHHHHHHHHHHcCCeeEEEecCCCHH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPM--DFKSVWEAMEECQNLGYTKAIGVSNFSCK 177 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 177 (257)
.++ |+.+++.+|.+.-- +.++-.............. ..+-...+.+.|.+.|..+ +++|||...
T Consensus 179 ~~~-l~~~~is~y~l~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~~ 244 (370)
T PRK06294 179 AIT-LPITHISLYNLTID-PHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR-YELASYAKP 244 (370)
T ss_pred HHc-cCCCeEEEeeeEec-CCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe-eeeeeeeCC
Confidence 775 89999999888742 2111000000000000000 0112223556688899865 899999743
No 96
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=56.15 E-value=1.8e+02 Score=27.46 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=90.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcc
Q 025159 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (257)
Q Consensus 63 Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~ 142 (257)
+|+++.+-++|++..+.. +.+-++|.+-+- ++-+-..++...++++.+.++++.++.|.....
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~-----selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~--------- 129 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSCT-----SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK--------- 129 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCCh-----HHHhccCHHHHHHHhccCCCcEEEecCCCcccc---------
Confidence 678888888988876543 234455655542 233434445555555554578999998854321
Q ss_pred cCCCCccHHHHHHHHHH-H----------HHcCCeeEEEecCC------CHHHHHHHHHhCCCCCceeccccC-------
Q 025159 143 EDFLPMDFKSVWEAMEE-C----------QNLGYTKAIGVSNF------SCKKLGDILATAKIPPAANQVEMN------- 198 (257)
Q Consensus 143 ~~~~~~~~~~~~~~l~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~p~~~q~~~~------- 198 (257)
. ......+++++-+ + .+.++|--||.++. +..++.++++..++.+.++ ++.+
T Consensus 130 -~--~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v-~p~g~s~~dl~ 205 (511)
T TIGR01278 130 -E--NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV-APWGASIADLA 205 (511)
T ss_pred -h--hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE-eCCCCCHHHHH
Confidence 0 0112222222221 1 23466888998763 5677888899888664322 1211
Q ss_pred --------CC-CCc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHh---CCCc
Q 025159 199 --------PL-WQQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAK---GKTV 252 (257)
Q Consensus 199 --------~~-~~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~---~~s~ 252 (257)
+. +++ ...-++.+ ++|++.+...|++- .....-+.++++-. |+.+
T Consensus 206 ~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~---------~~T~~fL~~l~~~~~~~g~~~ 265 (511)
T TIGR01278 206 RLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGV---------NATRRFIREIAALLNQAGADP 265 (511)
T ss_pred hcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCH---------HHHHHHHHHHHHHHhhcCCCC
Confidence 10 111 12344443 55999887777754 12456778888777 7664
No 97
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=56.01 E-value=1.4e+02 Score=26.01 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHhhCCCcccEEEeec--CCCCCCCCCCCCCcccCCCCccHHHH-----HHHHHHHHHcCCeeEEEecCCCHH-------
Q 025159 112 LENLQLEYIDLYVIHW--PVSSKPGSYEFPIKKEDFLPMDFKSV-----WEAMEECQNLGYTKAIGVSNFSCK------- 177 (257)
Q Consensus 112 L~~Lg~d~lDl~~lh~--p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~------- 177 (257)
++-++-.++|++.+.. +... ..+. -+.+.++.++--=|++|+.+.++.
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~------------------~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~ 116 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI------------------IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAE 116 (293)
T ss_pred HhhhcccccceEEeeccccccc------------------hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHH
Confidence 7777888899998884 2111 1122 256777777778889999988755
Q ss_pred HHHHHHHhCCCCCceeccccCCCCC-------c-HHHHHHHHHCCceEEEecCCCCCCCCCCCCC-ccChHHHHHHHHHh
Q 025159 178 KLGDILATAKIPPAANQVEMNPLWQ-------Q-NKLREFCKAKDIQLAAYAPLGARGTIWGSNR-VMECEVLKEIAEAK 248 (257)
Q Consensus 178 ~l~~~~~~~~~~p~~~q~~~~~~~~-------~-~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~-~~~~~~~~~ia~~~ 248 (257)
++++.....+ ++++.+++... . ..+.++|+++|++|+.+..... +. ++... ....-.+..+|+++
T Consensus 117 E~er~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~-~~-~~~~~~~~~p~~~~~va~~f 190 (293)
T COG2159 117 ELERRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP-GG-AGLEKGHSDPLYLDDVARKF 190 (293)
T ss_pred HHHHHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC-CC-cccccCCCCchHHHHHHHHC
Confidence 3444444433 33333333221 1 5699999999999998765543 11 11111 13345778888887
No 98
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=55.94 E-value=1.2e+02 Score=25.15 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=53.2
Q ss_pred CChhHHHHHHHHHHHc-----CCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCC---------------
Q 025159 37 SGSETTKLAILEAMKL-----GYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWC--------------- 96 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~-----Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~--------------- 96 (257)
.+.++....+..|++. |+|--=.+..-.++..+...++.+ + .|.-+||=++..+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~~~gvp~ 144 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAKELGVPA 144 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHHHCT--E
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHHHcCCCE
Confidence 5788899999999865 444332222223677778777776 3 4667777454421
Q ss_pred --------CCCChhhHHHHHHHHHHhhCCCcccEEEeec
Q 025159 97 --------SDAHRELVVPALQKSLENLQLEYIDLYVIHW 127 (257)
Q Consensus 97 --------~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~ 127 (257)
...+.+.|++++++..+.-+.+--=+...|-
T Consensus 145 ~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~ 183 (213)
T PF04748_consen 145 ARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHP 183 (213)
T ss_dssp EE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-
T ss_pred EeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcC
Confidence 1357889999999999988877666776664
No 99
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.87 E-value=1.5e+02 Score=26.38 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCC-----------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHH
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQ-----------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVP 106 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~ 106 (257)
+.++..+.+..+.+.|++.|=.--... .+...=+++++.+ -+++.|..-.. ..++++.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~-------g~~~~l~vDaN-~~~~~~~--- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAV-------GPDIDIGVDFH-GRVSKPM--- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh-------CCCCEEEEECC-CCCCHHH---
Confidence 556667777778899999886433210 1112222344431 23444444432 2233332
Q ss_pred HHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHh
Q 025159 107 ALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILAT 185 (257)
Q Consensus 107 ~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~ 185 (257)
..+.++.|. .+++.++..|.. .+-++.+.+|++..-+. +.|=|.+++..+..+++.
T Consensus 192 -A~~~~~~l~--~~~i~~iEeP~~--------------------~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~ 248 (352)
T cd03325 192 -AKDLAKELE--PYRLLFIEEPVL--------------------PENVEALAEIAARTTIPIATGERLFSRWDFKELLED 248 (352)
T ss_pred -HHHHHHhcc--ccCCcEEECCCC--------------------ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh
Confidence 333334443 246677777742 12367888888876554 567778899999999886
Q ss_pred CCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEec
Q 025159 186 AKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 186 ~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~ 221 (257)
..++ ++|....... .-..+.+.|+++||.++.++
T Consensus 249 ~~~d--~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 249 GAVD--IIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCCC--EEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 6555 7777654332 23689999999999999765
No 100
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=53.94 E-value=1.2e+02 Score=26.36 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=58.0
Q ss_pred HHHHHcCC-eeEEEecCCCHHHHHHHHHhCCCC--------------CceeccccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 158 EECQNLGY-TKAIGVSNFSCKKLGDILATAKIP--------------PAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 158 ~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~--------------p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
..+.+.+. +..+++++-+++.++++.+..+++ ++++-+ .++-....++...|-++|+.|++=.|
T Consensus 21 ~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~I-atp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 21 PALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYI-ATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred HHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE-cCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 34444444 788999999999888777766543 111100 01111235788899999999999999
Q ss_pred CCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 223 LGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 223 l~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
++. ++...+.+.++|++.|+.
T Consensus 100 la~--------t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 100 LAL--------TLEEAEELVELARKAGVK 120 (342)
T ss_pred CCC--------CHHHHHHHHHHHHHcCCc
Confidence 986 455667888999988754
No 101
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=53.87 E-value=1.6e+02 Score=26.01 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCC----------CCC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCC-C
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTAT----------LYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDA-H 100 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~----------~Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~-~ 100 (257)
.++++..++.+.+.+.|+..+|.-- .+| +...+.+.++...+. -++-|+.|+..... +
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a------~d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA------VDVPVTLKIRTGWAPE 147 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh------cCCceEEEEEccccCC
Confidence 4778888888888889999999432 233 255566666654211 14567788742211 1
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKL 179 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l 179 (257)
..... .+-+.+++.|. |.+.+|.-..... +. ...-|+...++++.=.|--||..+. +++.+
T Consensus 148 ~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~-----------~~---G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da 209 (321)
T PRK10415 148 HRNCV-EIAQLAEDCGI---QALTIHGRTRACL-----------FN---GEAEYDSIRAVKQKVSIPVIANGDITDPLKA 209 (321)
T ss_pred cchHH-HHHHHHHHhCC---CEEEEecCccccc-----------cC---CCcChHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 11122 33344677784 6778886432111 00 0123677777777767778888776 78888
Q ss_pred HHHHHhCCCC
Q 025159 180 GDILATAKIP 189 (257)
Q Consensus 180 ~~~~~~~~~~ 189 (257)
.++++..+.+
T Consensus 210 ~~~l~~~gad 219 (321)
T PRK10415 210 RAVLDYTGAD 219 (321)
T ss_pred HHHHhccCCC
Confidence 8888765533
No 102
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=53.38 E-value=1.9e+02 Score=26.91 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhC---CC--cccEEEeecCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQ---LE--YIDLYVIHWPVSSKPGS 135 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R-~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg---~d--~lDl~~lh~p~~~~~~~ 135 (257)
.||.+..+-+++++..+.. ++ +-++|.|-+-+.-. .+.+...+++.-++++ .. .+.++.+|.|.....
T Consensus 73 VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~eii-GDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs-- 146 (461)
T TIGR02931 73 VFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTEII-GDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS-- 146 (461)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHHhh-hcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc--
Confidence 4778888899998876553 22 34566666543211 2334444444444442 11 357899998865321
Q ss_pred CCCCCcccCCCCccHHHHHHHHHH-HHH----cCCeeEEEecC--CCHHHHHHHHHhCCCCCc
Q 025159 136 YEFPIKKEDFLPMDFKSVWEAMEE-CQN----LGYTKAIGVSN--FSCKKLGDILATAKIPPA 191 (257)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~-l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~p~ 191 (257)
.......+++++.+ +.. .++|--||-.+ -+.+.+.++++..++.+.
T Consensus 147 ----------~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 147 ----------MITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred ----------HHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceE
Confidence 01123333433332 222 46788888543 366778889998887743
No 103
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=53.04 E-value=41 Score=30.33 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCHHH-HHHHHHhCCCCCceeccccCCCCCc--HHHHHHHHHCCceEEEecCCCCCCCC
Q 025159 153 VWEAMEECQNLGYTKAIGVSNFSCKK-LGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLGARGTI 229 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~~~~~-l~~~~~~~~~~p~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~~~G~l 229 (257)
-..++.+|.+.|.+-+|-. .|=++. +..+...-.-.|. --|.+...+ +.+++.|+++||.+++-+ |-+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~-d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na-----Gg~ 81 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVG-DYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA-----GGL 81 (362)
T ss_pred cHHHHHHHHhcCCCCEEEE-ecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC-----CCC
Confidence 3567778888999998865 232222 1111111111111 112222111 578999999999999863 222
Q ss_pred CCCCCccChHHHHHHHHHhCCCccccc
Q 025159 230 WGSNRVMECEVLKEIAEAKGKTVAQVL 256 (257)
Q Consensus 230 ~~~~~~~~~~~~~~ia~~~~~s~~qva 256 (257)
.+.-..+.++++|+++|++ ..||
T Consensus 82 ---np~~~a~~v~eia~e~Gl~-lkvA 104 (362)
T PF07287_consen 82 ---NPAGCADIVREIARELGLS-LKVA 104 (362)
T ss_pred ---CHHHHHHHHHHHHHhcCCC-eeEE
Confidence 1222568999999999988 4443
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.88 E-value=1.3e+02 Score=27.08 Aligned_cols=99 Identities=16% Similarity=0.055 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 181 (257)
..-+..+-+.|.++|+++|++=..-.|..... ..+.++..+.+. +...++..++. .+...++.
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPq-------------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQ-------------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccc-------------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 44566777789999999988754333322111 011334455543 32335545553 58888888
Q ss_pred HHHhCCCCCceeccccC-------CCCC--c-----HHHHHHHHHCCceEE
Q 025159 182 ILATAKIPPAANQVEMN-------PLWQ--Q-----NKLREFCKAKDIQLA 218 (257)
Q Consensus 182 ~~~~~~~~p~~~q~~~~-------~~~~--~-----~~~~~~~~~~gi~v~ 218 (257)
+++.. .+-..+-++.| .-.. + .+++++++++|+.+.
T Consensus 130 A~~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 130 AIAAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred HHHcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 87753 22111111111 1111 1 478999999999885
No 105
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=52.87 E-value=1.9e+02 Score=26.73 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R-~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.||.+..+.++|++..+.. +. +-++|.+-+... ..-+.+..-+++.-++++ +.++.+|.|.....
T Consensus 98 V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~------- 163 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGV------- 163 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC---CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCccCC-------
Confidence 4788889999999887654 34 567777766432 112334444444334444 68999998865321
Q ss_pred cccCCCCccHHHHHHH-HHHHH--------HcCCeeEEEecCC--CHHHHHHHHHhCCCCCc
Q 025159 141 KKEDFLPMDFKSVWEA-MEECQ--------NLGYTKAIGVSNF--SCKKLGDILATAKIPPA 191 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~-l~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~ 191 (257)
........+.++ ++++. +.++|--||-.++ +.+++.++++..++++.
T Consensus 164 ----~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 164 ----SQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred ----ccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 001112333333 23343 3567888885554 46678999998887753
No 106
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=52.83 E-value=62 Score=24.01 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
..++.-|.-.++.|++. .|. .+..+.++.......++--+.++.+....+..+|++++|+++-+.
T Consensus 12 ~ki~~lL~la~ragkl~-~G~-----~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 12 NKALEAVEKARETGKIK-KGT-----NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 56778888888899874 665 677777787777777777776664444678999999999976653
No 107
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=52.80 E-value=85 Score=24.18 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC--CCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg--~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.|=.+.|+-|++. ...++.+++.+.++++... +...|++++...... .+.+++.+.|..+.
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~----------------~~f~~L~~~l~~~~ 108 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ----------------PDFLKLLQDFLQQI 108 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC----------------CCHHHHHHHHHHHH
Confidence 5778888889754 5678999999999998773 346899999987543 23566666666655
Q ss_pred Hc
Q 025159 162 NL 163 (257)
Q Consensus 162 ~~ 163 (257)
++
T Consensus 109 ~~ 110 (138)
T PRK00730 109 PE 110 (138)
T ss_pred HH
Confidence 43
No 108
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=52.56 E-value=2.1e+02 Score=27.11 Aligned_cols=162 Identities=12% Similarity=0.137 Sum_probs=85.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC--CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCC
Q 025159 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 63 Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~--~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
+|.+..+-++|++..+.. +-+-++|.+-+-+. ..+.+.+.+.++ .+++ ++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~eiIGDDi~~v~~~~~---~~~~---~pVi~v~t~~f~g~------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTSSILQEDLQNFVDRAS---IESD---SDVILADVNHYRVN------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCchhhhhcCHHHHHHHhh---cccC---CCEEEeCCCCCccc-------
Confidence 467777777777664432 33445555554332 123333333332 2233 68999999854311
Q ss_pred cccCCCC--ccHHHHHHHHHH-----------HHHcCCeeEEEecC------CCHHHHHHHHHhCCCCCcee-cc-----
Q 025159 141 KKEDFLP--MDFKSVWEAMEE-----------CQNLGYTKAIGVSN------FSCKKLGDILATAKIPPAAN-QV----- 195 (257)
Q Consensus 141 ~~~~~~~--~~~~~~~~~l~~-----------l~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~p~~~-q~----- 195 (257)
.+.. ..++.+++.+-. -...++|--||.++ .+...+.++++..++.+-.+ ..
T Consensus 131 ---~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~ 207 (513)
T CHL00076 131 ---ELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVE 207 (513)
T ss_pred ---HHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 0000 011222222211 01346788898774 36778899999887663211 10
Q ss_pred --------ccCCC-CCc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 196 --------EMNPL-WQQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 196 --------~~~~~-~~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
.+|+. +++ ..+-++.+ ++|++.+...|++- .....-+.++|+..|...
T Consensus 208 di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi---------~~T~~fLr~la~~lg~~~ 267 (513)
T CHL00076 208 DLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI---------VDTAECIRQIQKILNKLA 267 (513)
T ss_pred HHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH---------HHHHHHHHHHHHHhCCCc
Confidence 11111 111 23444444 56999988788864 235677889998888754
No 109
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=51.65 E-value=19 Score=21.24 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.3
Q ss_pred cChHHHHHHHHHhCCCcccc
Q 025159 236 MECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 236 ~~~~~~~~ia~~~~~s~~qv 255 (257)
...|.++.+|+++|+++.+|
T Consensus 4 ~asP~ar~la~e~gidl~~v 23 (39)
T PF02817_consen 4 KASPAARKLAAELGIDLSQV 23 (39)
T ss_dssp CCSHHHHHHHHHTT--GGGS
T ss_pred ccCHHHHHHHHHcCCCcccc
Confidence 34689999999999999887
No 110
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.57 E-value=1.7e+02 Score=25.84 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCC-------hH--HHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHH
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQT-------EQ--PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPAL 108 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~-------e~--~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l 108 (257)
+.++..+.++.+++.|++.|=.-...+. +. ..=+++++.+ -+++-|..-.. ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~-------g~~~~l~vDan-~~~~~~~A~--- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAV-------GYDVDLMLDCY-MSWNLNYAI--- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHh-------CCCCcEEEECC-CCCCHHHHH---
Confidence 5666777888888999998754321110 11 1122333331 13333433332 223443322
Q ss_pred HHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCC
Q 025159 109 QKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAK 187 (257)
Q Consensus 109 ~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~ 187 (257)
+.+++|. .+++.++..|.. .+-++.+.+|++...+. +.|=+.++...+.++++...
T Consensus 189 -~~~~~l~--~~~~~~iEeP~~--------------------~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a 245 (341)
T cd03327 189 -KMARALE--KYELRWIEEPLI--------------------PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA 245 (341)
T ss_pred -HHHHHhh--hcCCccccCCCC--------------------ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC
Confidence 2333332 246666776642 12356777888877765 66778889999999988765
Q ss_pred CCCceeccccCCCC---CcHHHHHHHHHCCceEEEec
Q 025159 188 IPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 188 ~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~ 221 (257)
++ ++|....-.. .-..+.+.|+++|+.++.++
T Consensus 246 ~d--~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 246 VD--ILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CC--EEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 54 7777665432 23689999999999988764
No 111
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=50.97 E-value=73 Score=29.54 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCccceeCCcCCC---------CChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEecc
Q 025159 24 MPVLGLGTAASPF---------SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (257)
Q Consensus 24 vs~lglG~~~~~~---------~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~ 94 (257)
+.+|.+|.-.+.. -+.+++.+.+..+.+.|+..+-..-.||
T Consensus 174 vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~G------------------------------ 223 (449)
T PRK09058 174 ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFG------------------------------ 223 (449)
T ss_pred CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEee------------------------------
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEEee-----------------cC-CCCCCCCCCCCCcccCCCCccHHHHHHH
Q 025159 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIH-----------------WP-VSSKPGSYEFPIKKEDFLPMDFKSVWEA 156 (257)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh-----------------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
.+..+.+.+++.++..++ ++.+++++|.+. .| +.... .+-.-.+
T Consensus 224 -lPgqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~----------------~~my~~~ 285 (449)
T PRK09058 224 -LPGQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAER----------------ADMYAYG 285 (449)
T ss_pred -CCCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHH----------------HHHHHHH
Q ss_pred HHHHHHcCCeeEEEecCC
Q 025159 157 MEECQNLGYTKAIGVSNF 174 (257)
Q Consensus 157 l~~l~~~G~ir~iGvs~~ 174 (257)
.+.|.+.|. +.+++|||
T Consensus 286 ~~~L~~~Gy-~~yeis~f 302 (449)
T PRK09058 286 VEFLAKAGW-RQLSNSHW 302 (449)
T ss_pred HHHHHHCCC-eEEeeeee
No 112
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=50.86 E-value=1.8e+02 Score=26.13 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=76.8
Q ss_pred CccceeCCcCC---C-----CChhHHHHHHHHHHHcC---CceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEec
Q 025159 25 PVLGLGTAASP---F-----SGSETTKLAILEAMKLG---YRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 25 s~lglG~~~~~---~-----~~~~~~~~~l~~Al~~G---i~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK 93 (257)
..+|-.|.++- . .+.+...+++....+.- +-.+|..+..++- -..+.+.+ + .+.-++|.+|
T Consensus 28 ~~~C~RC~~l~hy~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~---~~piilV~NK 99 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G---GNPVLLVGNK 99 (360)
T ss_pred CeeecchhhhhccCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C---CCCEEEEEEc
Confidence 34555555542 1 45555666555544321 1355755444320 11222221 1 3566889999
Q ss_pred c--CCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 94 L--WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 94 ~--~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
+ .+.....+.+.+-+++.++..|....+++.+..-.. ..++++++.+.++.+.+.+-.+|.
T Consensus 100 ~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g-----------------~gv~eL~~~l~~~~~~~~v~~vG~ 162 (360)
T TIGR03597 100 IDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG-----------------NGIDELLDKIKKARNKKDVYVVGV 162 (360)
T ss_pred hhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC-----------------CCHHHHHHHHHHHhCCCeEEEECC
Confidence 8 233334456666666667777865446666544321 247888999988877778899999
Q ss_pred cCCCHHHHHHH
Q 025159 172 SNFSCKKLGDI 182 (257)
Q Consensus 172 s~~~~~~l~~~ 182 (257)
+|.....|-..
T Consensus 163 ~nvGKStliN~ 173 (360)
T TIGR03597 163 TNVGKSSLINK 173 (360)
T ss_pred CCCCHHHHHHH
Confidence 99987665443
No 113
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=50.73 E-value=2.3e+02 Score=26.91 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=84.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcc
Q 025159 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKK 142 (257)
Q Consensus 63 Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~ 142 (257)
+|++..+-+++++..+.. +.+-++|.+-+-+ +-+-..++...++++.+ ++++.++.|......
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~s-----eiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~-------- 129 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCTA-----ELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKE-------- 129 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcHH-----HHhccCHHHHHHHhCCC-CCEEEEecCCccccc--------
Confidence 567778888888775443 2234566665432 33333344444455543 679999988553210
Q ss_pred cCCCCccHHHHHHHHHH-HH-----------HcCCeeEEEecC------CCHHHHHHHHHhCCCCCceeccccC------
Q 025159 143 EDFLPMDFKSVWEAMEE-CQ-----------NLGYTKAIGVSN------FSCKKLGDILATAKIPPAANQVEMN------ 198 (257)
Q Consensus 143 ~~~~~~~~~~~~~~l~~-l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~p~~~q~~~~------ 198 (257)
......++.++-+ +. +.++|--||.++ .+..++.++++..++.+.++ ++.+
T Consensus 130 ----~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v-~p~g~s~~di 204 (519)
T PRK02910 130 ----NWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV-APLGASPADL 204 (519)
T ss_pred ----chHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE-eCCCCCHHHH
Confidence 0112233333222 11 235688889864 24577888899888764332 1111
Q ss_pred ---------CC-CCc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 199 ---------PL-WQQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 199 ---------~~-~~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
+. +++ ..+-++.+ +.|++++...|++- --...-+.++++-.|+..
T Consensus 205 ~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~---------~~T~~fL~~la~~~g~~~ 262 (519)
T PRK02910 205 KRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGV---------GATARFIREVAELLNLDG 262 (519)
T ss_pred HhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccH---------HHHHHHHHHHHHHhCCCh
Confidence 11 111 12334444 56899888778754 113455566666555543
No 114
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=49.74 E-value=1.8e+02 Score=25.55 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCC--------CCC-------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCCh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTAT--------LYQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~--------~Yg-------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~ 101 (257)
.++++..++...+.+.|+..+|.-- .|| .-+.+.+.++...+. --+++-|+.|+.....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~----~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA----VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh----cCCCcceEEEEECCCCCc
Confidence 5778888888888899999888432 122 345556666654211 113578999975432222
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLG 180 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~ 180 (257)
+.. ..+-+.++..| +|.+.+|.-.... .+... .--|+...++++.-.|--||..+. +++...
T Consensus 148 ~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~-----------~y~g~--~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~ 210 (312)
T PRK10550 148 ERK-FEIADAVQQAG---ATELVVHGRTKED-----------GYRAE--HINWQAIGEIRQRLTIPVIANGEIWDWQSAQ 210 (312)
T ss_pred hHH-HHHHHHHHhcC---CCEEEECCCCCcc-----------CCCCC--cccHHHHHHHHhhcCCcEEEeCCcCCHHHHH
Confidence 222 35555677777 5777889643211 01100 012677778888777888888876 788888
Q ss_pred HHHHhCC
Q 025159 181 DILATAK 187 (257)
Q Consensus 181 ~~~~~~~ 187 (257)
++++..+
T Consensus 211 ~~l~~~g 217 (312)
T PRK10550 211 QCMAITG 217 (312)
T ss_pred HHHhccC
Confidence 8887654
No 115
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=49.50 E-value=1.2e+02 Score=23.31 Aligned_cols=89 Identities=15% Similarity=0.001 Sum_probs=50.1
Q ss_pred cCCeeEEEecCCCHHHH----HHHHHhCCCCCceeccccCCCCC----c------HHHHHHHHHCCceEEEecCCCCCCC
Q 025159 163 LGYTKAIGVSNFSCKKL----GDILATAKIPPAANQVEMNPLWQ----Q------NKLREFCKAKDIQLAAYAPLGARGT 228 (257)
Q Consensus 163 ~G~ir~iGvs~~~~~~l----~~~~~~~~~~p~~~q~~~~~~~~----~------~~~~~~~~~~gi~v~~~~pl~~~G~ 228 (257)
.-.+...|++..+...+ .+.+...+.+..++++--|=... + ..+++.+++++..++..++... -.
T Consensus 36 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~-~~ 114 (177)
T cd01822 36 DVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAP-PN 114 (177)
T ss_pred CeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC-Cc
Confidence 33467779988766543 33333334444555555442211 1 5688889988988887654321 11
Q ss_pred CCCCCCccChHHHHHHHHHhCCCc
Q 025159 229 IWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 229 l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
+.........+.++++|+++++..
T Consensus 115 ~~~~~~~~~~~~~~~~a~~~~~~~ 138 (177)
T cd01822 115 YGPRYTRRFAAIYPELAEEYGVPL 138 (177)
T ss_pred cchHHHHHHHHHHHHHHHHcCCcE
Confidence 101111123578889999988653
No 116
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=49.27 E-value=92 Score=27.90 Aligned_cols=69 Identities=13% Similarity=-0.043 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEecCC
Q 025159 153 VWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl 223 (257)
-++.+.+|++...+. ..|=|-++...+.++++...++ ++|....-..- -..+...|+.+|+.++.++.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d--~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAAD--VFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCC--EEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 367777788876654 6788888999999988876555 77766554321 267899999999999876544
No 117
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.14 E-value=1.5e+02 Score=26.92 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=62.4
Q ss_pred EEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CC---eeEEEec--CCCHHHHHHHHHhCC-C------C
Q 025159 123 YVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GY---TKAIGVS--NFSCKKLGDILATAK-I------P 189 (257)
Q Consensus 123 ~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~------~ 189 (257)
+-||.|++..+.... |... ..+++++.+++.+..+. |+ +.|+=+. |-++++..++.+..+ . +
T Consensus 232 iSLHA~~~e~R~~lm-Pin~----~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~ 306 (371)
T PRK14461 232 ISLHAPDDALRSELM-PVNR----RYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLL 306 (371)
T ss_pred EEeCCCCHHHHHHhc-Cccc----CCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCc
Confidence 779999775542222 2111 12478888988887653 32 1222222 556777777666554 3 5
Q ss_pred CceeccccCCCCC-------c---HHHHHHHHHCCceEEEecCCCC
Q 025159 190 PAANQVEMNPLWQ-------Q---NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 190 p~~~q~~~~~~~~-------~---~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
..+|-++||+... . ....+.++++||.+......|.
T Consensus 307 ~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 307 VHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred eEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 6899999998642 1 3557778899999999887754
No 118
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=48.87 E-value=1.2e+02 Score=27.66 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecCC
Q 025159 154 WEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 154 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl 223 (257)
++.+.+|++.-.+. ..|=|-++...+.++++...++ ++|....-.. .-..+.+.|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~d--ii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLID--YIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCC--EEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57777888876664 6678888999999998876655 7777665432 2368899999999999987554
No 119
>PLN02363 phosphoribosylanthranilate isomerase
Probab=48.80 E-value=88 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=40.3
Q ss_pred HhhCCCcccEEEeec-CCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-CCCHHHHHHHHHhCCCCC
Q 025159 113 ENLQLEYIDLYVIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPP 190 (257)
Q Consensus 113 ~~Lg~d~lDl~~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~p 190 (257)
.++|.|++=+++... |.. .+. +..+.+........++.|||. |-+++.+.++++..+++
T Consensus 64 ~~~GaD~iGfIf~~~SpR~-----------------Vs~-e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld- 124 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRS-----------------ISL-SVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLE- 124 (256)
T ss_pred HHcCCCEEEEecCCCCCCc-----------------CCH-HHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCC-
Confidence 458999988864332 211 112 334444444433246679986 88888888888866554
Q ss_pred ceecccc
Q 025159 191 AANQVEM 197 (257)
Q Consensus 191 ~~~q~~~ 197 (257)
++|+.-
T Consensus 125 -~VQLHG 130 (256)
T PLN02363 125 -LVQLHG 130 (256)
T ss_pred -EEEECC
Confidence 888764
No 120
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=48.68 E-value=23 Score=24.65 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 181 (257)
+++=...+.....||+...|+..|..-.+.. ..+.++..|..+++.. | .+-+...|.+
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~----------------l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~ 67 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHN----------------VQSQIVEALVKWRQRF-----G-KKATVQSLIQ 67 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHhc-----C-CCCcHHHHHH
Confidence 3455667788889999998888877521111 1467888888888852 2 3556788999
Q ss_pred HHHhCCCCCceecc
Q 025159 182 ILATAKIPPAANQV 195 (257)
Q Consensus 182 ~~~~~~~~p~~~q~ 195 (257)
++..++++|.+.|+
T Consensus 68 aL~~~~~~~~~~~~ 81 (83)
T cd08319 68 SLKAVEVDPSVLQF 81 (83)
T ss_pred HHHHcCCCHHHHHh
Confidence 99999998887764
No 121
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=48.05 E-value=77 Score=29.78 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCcee--eCCCCC----------CChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC-CCChhhHH----
Q 025159 43 KLAILEAMKLGYRHF--DTATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAHRELVV---- 105 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~--DtA~~Y----------g~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~-~~~~~~i~---- 105 (257)
-+-.++..+.|...+ =||.+| |....+..+-+++|-.. -+..+||++-++.= ..-|....
T Consensus 106 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~ 182 (545)
T TIGR01228 106 WEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGG 182 (545)
T ss_pred HHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCc
Confidence 344555566677644 244433 24455556666666322 47889998888431 00011110
Q ss_pred ------HHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 106 ------PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 106 ------~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-.+.+
T Consensus 183 v~i~vEvd~~ri~kR~~~gyld~~~-----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~ 239 (545)
T TIGR01228 183 VSIAVEVDESRIDKRLETKYCDEQT-----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVL 239 (545)
T ss_pred eEEEEEECHHHHHHHHhcCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHH
Confidence 1123444677788888653 12789999999999999999999999999999
Q ss_pred HHHHHhCC-CCCceeccccC
Q 025159 180 GDILATAK-IPPAANQVEMN 198 (257)
Q Consensus 180 ~~~~~~~~-~~p~~~q~~~~ 198 (257)
.++++..- ++...-|.+.+
T Consensus 240 ~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 240 PELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHcCCCCCCcCCCCccc
Confidence 99988642 33455666553
No 122
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=47.78 E-value=41 Score=27.50 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
.++++.+.+-+. + -.||..+- +.++++++++... ++ -.+| ....+++++|+++|+.++.
T Consensus 47 ~~~I~~l~~~~p-~--~~vGAGTV~~~e~a~~a~~aGA-~F-----ivSP-~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFP-D--LLVGAGTVLTAEQAEAAIAAGA-QF-----IVSP-GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHT-T--SEEEEES--SHHHHHHHHHHT--SE-----EEES-S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCC-C--CeeEEEeccCHHHHHHHHHcCC-CE-----EECC-CCCHHHHHHHHHcCCcccC
Confidence 344444444332 2 34888876 7888998888653 21 1222 2236899999999999985
No 123
>PLN02444 HMP-P synthase
Probab=47.77 E-value=1.8e+02 Score=27.94 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEE---EEecc--CCCCCChhhHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELF---IASKL--WCSDAHRELVVPALQK 110 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~---i~tK~--~~~~~~~~~i~~~l~~ 110 (257)
.+.++-.+=+..|.+.|-. ..|.+. .|+-..+.+++-+. ..+ +-..|= ...|+ ...+.+.+.+.+.+++
T Consensus 234 s~ie~EveK~~~A~~~GADTvMDLST-Ggdi~~iR~~Il~~--spv--PVGTVPIYqA~~~~~~~~~~lt~d~~~d~iee 308 (642)
T PLN02444 234 SSIEEEVYKLQWATMWGADTVMDLST-GRHIHETREWILRN--SPV--PVGTVPIYQALEKVDGIAENLTWEVFRETLIE 308 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 4555556667888899975 556653 33433344443221 011 111110 01111 1224567777777777
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
..+ +=+|.+-||.-. ..+.++.++ + |..|+.+-.-.-+..++....
T Consensus 309 Qae----qGVDfmTIH~Gv-----------------------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~--- 354 (642)
T PLN02444 309 QAE----QGVDYFTIHAGV-----------------------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH--- 354 (642)
T ss_pred HHH----hCCCEEEEChhh-----------------------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC---
Confidence 776 557888999851 234444444 3 557777666555555443222
Q ss_pred ceeccccCCCCC-cHHHHHHHHHCCceEEE
Q 025159 191 AANQVEMNPLWQ-QNKLREFCKAKDIQLAA 219 (257)
Q Consensus 191 ~~~q~~~~~~~~-~~~~~~~~~~~gi~v~~ 219 (257)
.=|++.. -+++++.|+++++.+--
T Consensus 355 -----kENPlYe~FD~ileI~k~YDVtlSL 379 (642)
T PLN02444 355 -----KENFAYEHWDDILDICNQYDIALSI 379 (642)
T ss_pred -----CcCchHHHHHHHHHHHHHhCeeeec
Confidence 1223332 25678888888877643
No 124
>PRK05414 urocanate hydratase; Provisional
Probab=47.76 E-value=82 Score=29.75 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCcee--eCCCCC----------CChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC-CCChhhH-----
Q 025159 43 KLAILEAMKLGYRHF--DTATLY----------QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAHRELV----- 104 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~--DtA~~Y----------g~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~-~~~~~~i----- 104 (257)
-+-..+.-+.|...+ =||.+| |....+..+-+++|. +. -+..+||++-++.= ..-|...
T Consensus 115 ~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~ 191 (556)
T PRK05414 115 WEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGA 191 (556)
T ss_pred HHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCc
Confidence 344555566676644 244443 244555556666653 22 47789999888431 0001110
Q ss_pred -----HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 105 -----VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 105 -----~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
+-.-.+.-+|+.+.|+|.+- .+++++++..++.+++|+...||+-..-++.+
T Consensus 192 v~i~vEvd~~ri~kR~~~gyld~~~-----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~ 248 (556)
T PRK05414 192 VCLAVEVDESRIDKRLRTGYLDEKA-----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVL 248 (556)
T ss_pred eEEEEEECHHHHHHHHhCCcceeEc-----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHH
Confidence 01123445677788888653 12789999999999999999999999999999
Q ss_pred HHHHHhCC-CCCceeccccC
Q 025159 180 GDILATAK-IPPAANQVEMN 198 (257)
Q Consensus 180 ~~~~~~~~-~~p~~~q~~~~ 198 (257)
+++++..- ++...-|.+.+
T Consensus 249 ~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 249 PELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHcCCCCCccCcCcccc
Confidence 99988742 33455566543
No 125
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=47.70 E-value=2e+02 Score=25.35 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
.+.++...+++.+.+.|+..|-.+..-. -..-+-+.++..-+.+ ...++-|+|... .+.+ .-+.|...
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L~~a 113 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAELADA 113 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHHHHc
Confidence 6778889999999999998876543211 1122334444331111 122566666521 1222 34556677
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 165 (257)
|++++- +-|+.++...- .... ..-.++.+++.++.+++.|.
T Consensus 114 Gl~~v~-ISlDs~~~e~~---~~i~-----~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 114 GLKRLN-ISLDTLRPELF---AALT-----RNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred CCCeEE-EEeccCCHHHh---hhhc-----CCCCHHHHHHHHHHHHHcCC
Confidence 877654 34444432110 0000 01236788888888888774
No 126
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=47.69 E-value=1.9e+02 Score=25.30 Aligned_cols=181 Identities=13% Similarity=0.185 Sum_probs=98.8
Q ss_pred ChhHHHHHHHHHHHcC-Cc--eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEecc---------CCCCCChhhHH
Q 025159 38 GSETTKLAILEAMKLG-YR--HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL---------WCSDAHRELVV 105 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~G-i~--~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~---------~~~~~~~~~i~ 105 (257)
+++...++++...+.+ +. .+.+-+.+-++..+.. ++++ |. +-.+.|..-. -...++.+.+.
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G~---~~~v~iG~ES~~d~~L~~~inKg~t~~~~~ 158 (313)
T TIGR01210 86 PKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---GV---NVEVAVGLETANDRIREKSINKGSTFEDFI 158 (313)
T ss_pred CHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---CC---CEEEEEecCcCCHHHHHHhhCCCCCHHHHH
Confidence 4445555555555555 32 3344444435555544 5544 42 2134443332 22345677777
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHH---HHHHH
Q 025159 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCK---KLGDI 182 (257)
Q Consensus 106 ~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~---~l~~~ 182 (257)
++++. +++.|+. +-.++|-.+-...+ ....++..+.++.+.+.+ .+|.+....+. .+.++
T Consensus 159 ~ai~~-~~~~Gi~-v~~~~i~G~P~~se-------------~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~ 221 (313)
T TIGR01210 159 RAAEL-ARKYGAG-VKAYLLFKPPFLSE-------------KEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFL 221 (313)
T ss_pred HHHHH-HHHcCCc-EEEEEEecCCCCCh-------------hhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHH
Confidence 77775 4557886 55555555421111 112455556666666655 67777666533 46677
Q ss_pred HHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCc-cChHHHHHHHHHhCCC
Q 025159 183 LATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRV-MECEVLKEIAEAKGKT 251 (257)
Q Consensus 183 ~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~-~~~~~~~~ia~~~~~s 251 (257)
.+...+.|.. ++...+++..+++.++.++. -|.+. |.-.|+++= .-+..+.+.-++++.|
T Consensus 222 ~~~G~~~pp~-------lws~~e~l~e~~~~~~~~~~-d~~g~-~~~rg~~nc~~c~~~~~~~~~~~~~~ 282 (313)
T TIGR01210 222 WNRGLYRPPW-------LWSVAEVLKEAKKIGAEVLS-DPVGA-GSDRGAHNCGKCDKRVKEAIRKFSLT 282 (313)
T ss_pred HHcCCCCCCC-------HHHHHHHHHHHHhhCCeEEe-cCCCC-CCcCCCcCcchhhHHHHHHHHHhccc
Confidence 6665544321 12335778888877776665 68887 766555552 2346666666777655
No 127
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=47.48 E-value=2e+02 Score=27.49 Aligned_cols=169 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEE---EEeccC--CCCCChhhHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELF---IASKLW--CSDAHRELVVPALQK 110 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~---i~tK~~--~~~~~~~~i~~~l~~ 110 (257)
.+.++-.+=+..|.+.|-. ..|.+.. |+-..+.+++-+. ..+ +-..|= ...|+. ..+.+.+.+.+.+++
T Consensus 229 s~ieeEveK~~~A~~~GADtvMDLSTG-gdi~~~R~~Il~~--spv--PvGTVPiYqA~~~~~~~~~~lt~e~~~d~iee 303 (607)
T PRK09284 229 SSIEEEVEKMVWATRWGADTVMDLSTG-KNIHETREWILRN--SPV--PIGTVPIYQALEKVNGVAEDLTWEIFRDTLIE 303 (607)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCC-CCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 3445555667888888875 5576643 3433344443211 011 111110 111111 224567777777777
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCC
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
..+ +=+|.+-||.-. ..+.++.++ + |..||.+-.-..+..++....
T Consensus 304 QAe----qGVDf~TIHaGv-----------------------~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~--- 349 (607)
T PRK09284 304 QAE----QGVDYFTIHAGV-----------------------LLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH--- 349 (607)
T ss_pred HHH----hCCCEEEEChhh-----------------------HHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC---
Confidence 776 457888999851 234444444 3 567877776666555544322
Q ss_pred ceeccccCCCCC-cHHHHHHHHHCCceEEEecCCCCCCCCCCCCC------ccChHHHHHHHHHhCC
Q 025159 191 AANQVEMNPLWQ-QNKLREFCKAKDIQLAAYAPLGARGTIWGSNR------VMECEVLKEIAEAKGK 250 (257)
Q Consensus 191 ~~~q~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~------~~~~~~~~~ia~~~~~ 250 (257)
.=|++.. -+++++.|+++++.+----.|-- |-+..... +....++.+.|.++|+
T Consensus 350 -----kENplYe~FD~ileI~k~YDVtlSLGDGLRP-G~iaDA~D~AQ~~EL~tLGELt~rA~e~gV 410 (607)
T PRK09284 350 -----KENFLYTHFEEICEIMAAYDVSFSLGDGLRP-GSIADANDEAQFAELETLGELTKIAWEHDV 410 (607)
T ss_pred -----CcCcHHHHHHHHHHHHHHhCeeeeccCCcCC-CccccCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 1123332 25688888888887754333321 33322111 1223566666677664
No 128
>PRK06683 hypothetical protein; Provisional
Probab=47.29 E-value=54 Score=22.68 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 157 MEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 157 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
++.+.+.|++. +|. .+..+.++....+..++--+.+.- ....+.+.|++++|+++.+.
T Consensus 3 ~~~~~~agk~v-~G~-----~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 3 YQKVSNAENVV-VGH-----KRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred hHHHHhCCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEEC
Confidence 45667777753 555 566666676666655554443321 13678899999999998764
No 129
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.66 E-value=79 Score=26.16 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCC---eeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 153 VWEAMEECQNLGY---TKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 153 ~~~~l~~l~~~G~---ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..+.++.++++-. =-.||+.+- ++++++++.+... .+ -.+| ....+++++|+++||.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~F-----ivsP-~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QF-----IVSP-SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CE-----EECC-CCCHHHHHHHHHcCCCEEC
Confidence 3445555554321 125888776 7888888877653 21 1123 2235789999999888874
No 130
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.32 E-value=2.4e+02 Score=25.87 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCccc
Q 025159 64 QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKE 143 (257)
Q Consensus 64 g~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~ 143 (257)
|+++.+-++|++..+.. +.+-++|.+-+-+. ..-+.+..-+++.-++++ +.++.+|.|.....
T Consensus 68 G~~~kL~~~I~~~~~~~---~p~~I~v~~tC~~~-iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~---------- 130 (430)
T cd01981 68 GSQEKVVENITRKDKEE---KPDLIVLTPTCTSS-ILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVN---------- 130 (430)
T ss_pred CcHHHHHHHHHHHHHhc---CCCEEEEeCCccHH-HHhhCHHHHHHHhhhccC---CCeEEecCCCccch----------
Confidence 45667777777775443 23456666654332 111223333333223333 57888898854321
Q ss_pred CCCCccHHHHHHHHHH-H-------------HHcCCeeEEEecCC------CHHHHHHHHHhCCCCCceeccc-------
Q 025159 144 DFLPMDFKSVWEAMEE-C-------------QNLGYTKAIGVSNF------SCKKLGDILATAKIPPAANQVE------- 196 (257)
Q Consensus 144 ~~~~~~~~~~~~~l~~-l-------------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~p~~~q~~------- 196 (257)
.......++.++.+ + .+..+|--||.++. +.+.+.++++..++++..+-..
T Consensus 131 --~~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i 208 (430)
T cd01981 131 --ELQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDL 208 (430)
T ss_pred --HHHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHH
Confidence 00012222222222 1 12356888888743 4577888889888665332111
Q ss_pred -------cCCC-CCc--HHHHHHH-HHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 197 -------MNPL-WQQ--NKLREFC-KAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 197 -------~~~~-~~~--~~~~~~~-~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
+|+. ++. ..+-++. +++||+.+...|++. -....-+.+|++..|+.
T Consensus 209 ~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G~---------~~t~~~l~~i~~~~g~~ 265 (430)
T cd01981 209 NELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIGV---------VATARFLREIQELLGIQ 265 (430)
T ss_pred HhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCCh---------HHHHHHHHHHHHHhCCc
Confidence 1111 110 1233333 456999988777754 12345666666666654
No 131
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=46.20 E-value=1.7e+02 Score=24.20 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=48.7
Q ss_pred HHhhCCCcccEEEee-cCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC-eeEEEec-CCCHHHHHHHHHhCCC
Q 025159 112 LENLQLEYIDLYVIH-WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVS-NFSCKKLGDILATAKI 188 (257)
Q Consensus 112 L~~Lg~d~lDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~ 188 (257)
...+|.||+=+++.- .|.. .+. +...++...-. ++.+||. |.+.+.+.++++...+
T Consensus 18 a~~~gad~iG~If~~~SpR~-----------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~l 76 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRY-----------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGL 76 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCc-----------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCC
Confidence 446888888777655 3322 123 23333333333 7899987 6678888888886554
Q ss_pred CCceeccccCCCCCcHHHHHHHHHCC-ceEE
Q 025159 189 PPAANQVEMNPLWQQNKLREFCKAKD-IQLA 218 (257)
Q Consensus 189 ~p~~~q~~~~~~~~~~~~~~~~~~~g-i~v~ 218 (257)
.++|+.-. ...+.++..++.. ++++
T Consensus 77 --d~VQlHG~---e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 77 --DAVQLHGD---EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred --CEEEECCC---CCHHHHHHHHhhcCCceE
Confidence 48887542 3345666666654 5544
No 132
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=46.14 E-value=2e+02 Score=25.11 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEE--ecCCCHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG--VSNFSCK 177 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~~~ 177 (257)
+++.+..-..+.++ +|. ++.|.+|-+.. .-+.|..|.+-.. .++.-+| +...++.
T Consensus 134 s~delid~y~~li~----~YP-IvsIEDpf~ed-----------------D~e~w~~lt~~~g-~~~~iVGDDl~vTn~~ 190 (295)
T PF00113_consen 134 SSDELIDYYKDLIK----KYP-IVSIEDPFDED-----------------DWEGWAKLTKRLG-DKIQIVGDDLFVTNPK 190 (295)
T ss_dssp EHHHHHHHHHHHHH----HS--EEEEESSS-TT------------------HHHHHHHHHHHT-TTSEEEESTTTTT-HH
T ss_pred CHHHHHHHHHHHHH----hcC-eEEEEcccccc-----------------chHHHHHHHHhhh-cceeeecccccccchh
Confidence 45566666665555 565 89999885432 2367777776654 3688888 4455788
Q ss_pred HHHHHHHhCCCCC---ceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 178 KLGDILATAKIPP---AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 178 ~l~~~~~~~~~~p---~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.+.+.++...... .+||+. .+..--+.+..++++|..++..+.-
T Consensus 191 ri~~~i~~~~~na~llK~NQig--Tvte~lea~~~a~~~g~~~vvS~rs 237 (295)
T PF00113_consen 191 RIKKGIEKKACNALLLKPNQIG--TVTETLEAVKLAKSAGWGVVVSHRS 237 (295)
T ss_dssp HHHHHHHCT--SEEEE-HHHHS--SHHHHHHHHHHHHHTT-EEEEE--S
T ss_pred hhhccchhhhccchhhhhhhhH--HHHHHHHHHHHHHHCCceeeccCCC
Confidence 9988877543221 233321 1111246788899999998876644
No 133
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=46.04 E-value=2.3e+02 Score=25.76 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEecCCCC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
..+..+..+.+.+.++.+-+...+.+.+++.++. +.+..++..+-|+... -..+.+.|+++|+.++.=...+.
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 4455555554555566666665677888776642 3444455555555443 26789999999998887666553
No 134
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.77 E-value=1.1e+02 Score=26.28 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=37.5
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 182 (257)
...|+++|.-|....+ .....++++-|.+|+++|+. |=+.+||...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD-------------~~~~~~i~~lL~~l~~eg~t--Il~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVD-------------VAGQKEIYDLLKELRQEGKT--VLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCC-------------HHHHHHHHHHHHHHHHCCCE--EEEEeCCcHHhHhh
Confidence 4578999988865432 23456899999999999885 77888987776654
No 135
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.46 E-value=1.9e+02 Score=24.47 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEecCCCHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNFSCKKLG 180 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~ 180 (257)
..-+..+-+.|.++|+++|++-+ |.. -+.-|+.++.+.+.+ .++..+.+..+.+.++
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g~---p~~-------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~ 76 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVGI---PAM-------------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIE 76 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec---CCC-------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Confidence 34556666779999999888842 311 122356666666643 4777777777888888
Q ss_pred HHHHhCCCCCceeccccCCCC--------Cc------HHHHHHHHHCCceEEE
Q 025159 181 DILATAKIPPAANQVEMNPLW--------QQ------NKLREFCKAKDIQLAA 219 (257)
Q Consensus 181 ~~~~~~~~~p~~~q~~~~~~~--------~~------~~~~~~~~~~gi~v~~ 219 (257)
.+.+. .++..-+-++.|..+ ++ .+.+++|+++|+.+..
T Consensus 77 ~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 77 AALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 77654 333111111112111 11 3678899999997653
No 136
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=45.38 E-value=2.2e+02 Score=27.71 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=49.1
Q ss_pred HHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-CCCHHHHHHHHHhCCCCC
Q 025159 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILATAKIPP 190 (257)
Q Consensus 112 L~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~p 190 (257)
...+|.|++=+++....... .+.+...+.+.+......++.|||. |-+++.+.++.+...++
T Consensus 19 a~~~gaD~iGfIf~~~SpR~----------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld- 81 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRF----------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGID- 81 (610)
T ss_pred HHHcCCCEEEEEecCCCCCC----------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCC-
Confidence 35589999988754432111 1233313333333333357789986 88898998888866554
Q ss_pred ceeccccCCCCCcHHHHHHHHHCCceEE
Q 025159 191 AANQVEMNPLWQQNKLREFCKAKDIQLA 218 (257)
Q Consensus 191 ~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 218 (257)
++|+.-..-....+.++..++.++.++
T Consensus 82 -~vQLHG~e~~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 82 -FVQLHGAESKAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred -EEEECCCCCcccHHHHHHhhhcCCcEE
Confidence 888764321111233444444445443
No 137
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.28 E-value=2.3e+02 Score=25.39 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 180 (257)
-+....|+. .|++.|. |++=+-.| ..+..+++.+++++=.+=-|+=-.|+...+.
T Consensus 35 v~aTv~QI~-~L~~aG~---dIVRvtv~---------------------~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~ 89 (361)
T COG0821 35 VEATVAQIK-ALERAGC---DIVRVTVP---------------------DMEAAEALKEIKQRLNVPLVADIHFDYRLAL 89 (361)
T ss_pred HHHHHHHHH-HHHHcCC---CEEEEecC---------------------CHHHHHHHHHHHHhCCCCEEEEeeccHHHHH
Confidence 344444443 3666774 77777776 3467788999999888888888888865555
Q ss_pred HHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEE
Q 025159 181 DILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLA 218 (257)
Q Consensus 181 ~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 218 (257)
+..+.+--+..+|..++....+-.++++.|+++|+++=
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piR 127 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIR 127 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEE
Confidence 55554322222333322222222789999999999883
No 138
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=45.24 E-value=1.5e+02 Score=23.41 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=53.5
Q ss_pred CeeEEEecCCCHHHHH------HHHHhC-CCCCceeccccCCCCC-------c--------HHHHHHHHHCCceEEEecC
Q 025159 165 YTKAIGVSNFSCKKLG------DILATA-KIPPAANQVEMNPLWQ-------Q--------NKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 165 ~ir~iGvs~~~~~~l~------~~~~~~-~~~p~~~q~~~~~~~~-------~--------~~~~~~~~~~gi~v~~~~p 222 (257)
.|...|+++.+..++. +++... ..+..++++-.|=... . ..+++.++++++.++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 5677799988776542 344332 3444566665442211 1 4689999999999998887
Q ss_pred CCCCCCCCCC----CCccChHHHHHHHHHhCCCcc
Q 025159 223 LGARGTIWGS----NRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 223 l~~~G~l~~~----~~~~~~~~~~~ia~~~~~s~~ 253 (257)
......-.+. ......+.++++|+++|+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCEE
Confidence 6421111111 111125889999999997654
No 139
>PLN02428 lipoic acid synthase
Probab=45.21 E-value=2.3e+02 Score=25.45 Aligned_cols=166 Identities=9% Similarity=0.123 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHHcCCceeeCC-------CCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTA-------TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA-------~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~ 109 (257)
.+.++..+..+.+.+.|++++=.. +..| -..+.+.++...+.. ..+.|.. ..+++-. . +
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-a~~~~elir~Ir~~~-----P~i~Ie~--L~pdf~~---d---~ 195 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-SGHFAETVRRLKQLK-----PEILVEA--LVPDFRG---D---L 195 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-HHHHHHHHHHHHHhC-----CCcEEEE--eCccccC---C---H
Confidence 566777788888888898765322 1222 234555555541111 1233332 2222210 1 2
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCC--CCccHHHHHHHHHHHHHc--CCeeE----EEecCCCHHHHHH
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDF--LPMDFKSVWEAMEECQNL--GYTKA----IGVSNFSCKKLGD 181 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~--G~ir~----iGvs~~~~~~l~~ 181 (257)
+.|++|.-.-+|.+. |+++. .+ .-.... .....++.++.++.+++. |..-. +|+ +-+.+++.+
T Consensus 196 elL~~L~eAG~d~i~-hnlET-v~------rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e 266 (349)
T PLN02428 196 GAVETVATSGLDVFA-HNIET-VE------RLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQ 266 (349)
T ss_pred HHHHHHHHcCCCEEc-cCccC-cH------HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHH
Confidence 333333323366644 76653 21 001111 123477889999999887 76532 466 456666666
Q ss_pred HHHhC---CCC---------CceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCC
Q 025159 182 ILATA---KIP---------PAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 182 ~~~~~---~~~---------p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
.+... +++ |.-..++.+.+-.+ ..+-+++.+.|...++.+||-.
T Consensus 267 ~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 267 TMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 65543 222 22222333333332 5678888899999999999975
No 140
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.10 E-value=94 Score=26.21 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCCCceec-----cccCCCCCc-----------HHHHHHHHHCCceEEEecCCCCCCCCCCCCC-----
Q 025159 176 CKKLGDILATAKIPPAANQ-----VEMNPLWQQ-----------NKLREFCKAKDIQLAAYAPLGARGTIWGSNR----- 234 (257)
Q Consensus 176 ~~~l~~~~~~~~~~p~~~q-----~~~~~~~~~-----------~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~----- 234 (257)
..++.++++..++++.... .++|..... ...+++|+..|...+...|... |.......
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~~~~~~~~~~ 127 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLTPPNVIWGRL 127 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCCHHHHHHHH
Confidence 4566677777776654332 233432221 3567889999999887777543 32110000
Q ss_pred ccChHHHHHHHHHhCCCc
Q 025159 235 VMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 235 ~~~~~~~~~ia~~~~~s~ 252 (257)
...-..+.++|+++|++.
T Consensus 128 ~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 128 AENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 011266777888888654
No 141
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=44.81 E-value=1.2e+02 Score=22.47 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=47.9
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC---CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~---d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (257)
.|=.+.|+-|+......++.+++.+.+.++.+.. ...|++++-.+.... .+..++.+.|..|
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~---------------~~~~~l~~~l~~l 111 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE---------------CNYEQFLQELEQL 111 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 5666778888776677889999999999987643 357999999885432 3467778888776
Q ss_pred HHc
Q 025159 161 QNL 163 (257)
Q Consensus 161 ~~~ 163 (257)
.+.
T Consensus 112 l~k 114 (122)
T PRK03031 112 LIQ 114 (122)
T ss_pred HHH
Confidence 554
No 142
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=44.46 E-value=2.3e+02 Score=25.11 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=86.5
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCC----------CC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCCh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATL----------YQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~----------Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~ 101 (257)
.+++...++-+.+-+.|+..+|.--. +| +...+.+.++...+. -. ++-|+.|+.....+.
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a----v~-~iPVTVKiRlG~d~~ 150 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA----VG-DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh----hC-CCCeEEEEecccCcc
Confidence 57788899999999999998885332 33 466777777765322 12 678999985443333
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC-eeEEEecC-CCHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSN-FSCKKL 179 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~l 179 (257)
+.....+-+.++..| +|.+.+|.-.....+. ...-|+...++++.=. |--||=.+ ++++..
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~--------------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a 213 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGYL--------------GPADWDYIKELKEAVPSIPVIANGDIKSLEDA 213 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcCC--------------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHH
Confidence 334555667777777 5889999865433211 1145777778887666 66666555 688889
Q ss_pred HHHHHhCC
Q 025159 180 GDILATAK 187 (257)
Q Consensus 180 ~~~~~~~~ 187 (257)
.+.++..+
T Consensus 214 ~~~l~~tg 221 (323)
T COG0042 214 KEMLEYTG 221 (323)
T ss_pred HHHHHhhC
Confidence 89888754
No 143
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.36 E-value=2.6e+02 Score=25.70 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=88.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R-~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.||.+..+.++|++..+.. +. +-++|.|-+-+.-. -+.+..-+++.-++++ ++++.+|.|..... .
T Consensus 79 VfGg~~kL~~~I~~~~~~~---~p~~~I~V~tTC~~~iI-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~-s----- 145 (421)
T cd01976 79 VFGGDKKLAKAIDEAYELF---PLNKGISVQSECPVGLI-GDDIEAVARKASKELG---IPVVPVRCEGFRGV-S----- 145 (421)
T ss_pred ecCCHHHHHHHHHHHHHhC---CCccEEEEECCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEeCCCccCC-c-----
Confidence 4788888999999886654 33 56778777654211 1333333444433444 58899998865320 0
Q ss_pred cccCCCCccHHHHHHHHHHHH-----HcCCeeEEEecCC--CHHHHHHHHHhCCCCCceeccccCCCC------------
Q 025159 141 KKEDFLPMDFKSVWEAMEECQ-----NLGYTKAIGVSNF--SCKKLGDILATAKIPPAANQVEMNPLW------------ 201 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~-----~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q~~~~~~~------------ 201 (257)
....+ ....+.+++.|.... +.++|--||-.++ +.+++.++++..++++...-..-..+.
T Consensus 146 ~~~G~-~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lni 224 (421)
T cd01976 146 QSLGH-HIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNL 224 (421)
T ss_pred ccHHH-HHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEE
Confidence 00000 001122333333211 1467888885554 567789999988876432111111000
Q ss_pred ---Cc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 202 ---QQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 202 ---~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
.. ..+-++.+ ++||+.+...|++- --...-++++|+..|.+
T Consensus 225 v~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi---------~~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 225 IHCYRSMNYIARMMEEKYGIPWMEYNFFGP---------TKIAESLRKIAAYFDDE 271 (421)
T ss_pred EECcHHHHHHHHHHHHHhCCcEEecccCCH---------HHHHHHHHHHHHHhCch
Confidence 01 12344454 47999998877643 12345666666666654
No 144
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.18 E-value=55 Score=27.77 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=18.4
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC
Q 025159 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ 64 (257)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 64 (257)
+++...+..+.+...+.++.+.+.|...|=.++.+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G 163 (259)
T cd07939 128 VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG 163 (259)
T ss_pred EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 343333334555555555555555555554444444
No 145
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.93 E-value=2.2e+02 Score=24.88 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCC---------C-CC-----hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC-CCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATL---------Y-QT-----EQPLGDAIAEALSTGIIKSRDELFIASKLWCS-DAH 100 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~---------Y-g~-----e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~-~~~ 100 (257)
.++++..++.+.+.+.|+..+|.--. | |+ .+.+.+.++... .+-++-|+.|+... +.+
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr------~~~~~pv~vKir~g~~~~ 145 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV------DAVDIPVTVKIRIGWDDA 145 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH------hhcCCCEEEEEEcccCCC
Confidence 47788899999999999998876322 2 32 345555555541 12236688887322 111
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKL 179 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l 179 (257)
...+ ..+-+.|+..|+ |.+.+|....... + .....|+...++++.=.+--||.... +++.+
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~-----------~---~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da 207 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQG-----------Y---SGEANWDIIARVKQAVRIPVIGNGDIFSPEDA 207 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEccccccc-----------C---CCchhHHHHHHHHHcCCCcEEEeCCCCCHHHH
Confidence 1122 234455677785 5666785322110 0 01134677777777656777777766 57788
Q ss_pred HHHHHhCC
Q 025159 180 GDILATAK 187 (257)
Q Consensus 180 ~~~~~~~~ 187 (257)
.++++...
T Consensus 208 ~~~l~~~g 215 (319)
T TIGR00737 208 KAMLETTG 215 (319)
T ss_pred HHHHHhhC
Confidence 88886544
No 146
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=43.86 E-value=2e+02 Score=24.38 Aligned_cols=170 Identities=21% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCccceeCCcCCCCChhHHHHHHHHHH-HcCCceeeCCCCCCC--hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCC
Q 025159 24 MPVLGLGTAASPFSGSETTKLAILEAM-KLGYRHFDTATLYQT--EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAH 100 (257)
Q Consensus 24 vs~lglG~~~~~~~~~~~~~~~l~~Al-~~Gi~~~DtA~~Yg~--e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~ 100 (257)
=|+|-+||..+++ .+++..|+ .+|...+=.|----+ ...-+.-+- ..+ +++++.+.-.. ....+
T Consensus 8 ~SRL~lGTgky~s------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~----~~i--~~~~~~lLPNT-aGc~t 74 (247)
T PF05690_consen 8 RSRLILGTGKYPS------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNIL----DYI--DRSGYTLLPNT-AGCRT 74 (247)
T ss_dssp S-SEEEE-STSSS------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCC----CCT--TCCTSEEEEE--TT-SS
T ss_pred ecceEEecCCCCC------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHH----HHh--cccCCEECCcC-CCCCC
Confidence 4789999999864 56666666 457666544332110 000011111 122 44555444332 23456
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLG 180 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 180 (257)
.++-.+..+-+.+.++++.|-+=.+.++....| +.-+++++-+.|+++|-+- +=-++-|+-..+
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~P---------------D~~etl~Aae~Lv~eGF~V-lPY~~~D~v~ak 138 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGDDKTLLP---------------DPIETLKAAEILVKEGFVV-LPYCTDDPVLAK 138 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B----------------HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCC---------------ChhHHHHHHHHHHHCCCEE-eecCCCCHHHHH
Confidence 677778888888999998887776666543222 4679999999999999874 556677777777
Q ss_pred HHHHhCCCCCceeccccCCCCC------cHHHHHHHHHCCceEEEecCCCC
Q 025159 181 DILATAKIPPAANQVEMNPLWQ------QNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 181 ~~~~~~~~~p~~~q~~~~~~~~------~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++.+.. +..++---+|... ...+-..+++.+|+|+.-.-++.
T Consensus 139 rL~d~G---caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~ 186 (247)
T PF05690_consen 139 RLEDAG---CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGT 186 (247)
T ss_dssp HHHHTT----SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---S
T ss_pred HHHHCC---CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCC
Confidence 776643 2233222222221 13455556677999998765543
No 147
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=43.54 E-value=2.6e+02 Score=25.57 Aligned_cols=161 Identities=12% Similarity=0.029 Sum_probs=88.1
Q ss_pred CCCC-hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQT-EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~-e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.+|. ++.+.+++++..+.. +-+-++|.|-+-..- +=..++...++. ....++.+|.|..... .
T Consensus 71 v~g~~~~~L~~~i~~~~~~~---~p~~I~V~stC~~e~-----iGdDi~~~~~~~--~~~~vv~v~tpgf~g~-~----- 134 (416)
T cd01980 71 STGKLFEDIREAIRKLADPP---AYTFIPVISLCVAET-----AGVAEELLPKQI--DGVRVILVRGPAFPIH-S----- 134 (416)
T ss_pred ccCchHHHHHHHHHHHhhcC---CCCEEEEeCCChhhh-----hcCchhhhhccc--CCCeEEEecCCCccCC-c-----
Confidence 3565 778888888864332 334567777664321 112222233322 2357899998866421 0
Q ss_pred cccCCCCccHHHHHHHH-HHHHH------cCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCC-----------
Q 025159 141 KKEDFLPMDFKSVWEAM-EECQN------LGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLW----------- 201 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l-~~l~~------~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~----------- 201 (257)
........+.++ +.+.. .++|--||--+- +.+++.++++..++++.+. ++-..+.
T Consensus 135 -----~~~G~~~a~~~i~~~l~~~~~~~~~~~vniiG~~~~~d~~ei~~lL~~~Gl~~~~~-l~~~~~~el~~~~~A~~~ 208 (416)
T cd01980 135 -----HPEAKDVGAMLLLARFEDFDGPVAEPSLALLGEMFPADPVAIGSVLERMGLAAVPV-VPTREWRELYAAGDAAAV 208 (416)
T ss_pred -----chhHHHHHHHHHHHhhhccccCCCCCeEEEEccCCCCCHHHHHHHHHHcCCceeeE-eCCCCHHHHhhcccCcEE
Confidence 011122222222 23332 367888884333 6678999999998886431 2222111
Q ss_pred ----C-cHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcc
Q 025159 202 ----Q-QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 202 ----~-~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
+ ....-++.+++||+++.-.|++- -..+.-++++|+-.|+++.
T Consensus 209 i~~~~~~~~~a~~Le~~GvP~~~~~piG~---------~~td~~l~~la~~~g~~~~ 256 (416)
T cd01980 209 AALHPFYTATIRELEEAGRPIVSGAPVGA---------DGTAAWLEAVGEALGLDMD 256 (416)
T ss_pred EEeChhHHHHHHHHHHcCCceecCCCcCc---------hHHHHHHHHHHHHhCcCch
Confidence 0 13446666778999875556643 1345667777777776554
No 148
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=43.49 E-value=1e+02 Score=23.08 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
+.+..-|.-.++.|++. .|. .+..+.++.......++--+.++.+....+...|++++|+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~G~-----~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KGT-----NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-EcH-----HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 45777777888899874 665 67777777777777777666665433357899999999997654
No 149
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=43.29 E-value=83 Score=21.91 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
+...+...++.|++ .+|+ .+..+.+........+.--+.++.....-+..+|++++|+++-..
T Consensus 3 i~~~l~~a~~~~~l-v~G~-----~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 3 IYKLLKLARKAGRL-VKGI-----KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHSEE-EESH-----HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHHhcCCE-EEch-----HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 45666777778885 4676 677788887777766766665553333347889999999997653
No 150
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.26 E-value=2.3e+02 Score=24.95 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=47.5
Q ss_pred CCcEEEEeccCCCC-----CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHH
Q 025159 85 RDELFIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE 159 (257)
Q Consensus 85 R~~l~i~tK~~~~~-----~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (257)
-+++.|..|+...+ .+.+... .+-+.|+..|+|+++ +|........ .. .......+..+.+
T Consensus 219 G~d~~v~vri~~~~~~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~--~~--------~~~~~~~~~~~~~ 284 (336)
T cd02932 219 PEDKPLFVRISATDWVEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQ--KI--------PVGPGYQVPFAER 284 (336)
T ss_pred CCCceEEEEEcccccCCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCccc--cc--------CCCccccHHHHHH
Confidence 35678888986432 2333222 233456667765554 4432111000 00 0001112355566
Q ss_pred HHHcCCeeEEEecCC-CHHHHHHHHHhCCCC
Q 025159 160 CQNLGYTKAIGVSNF-SCKKLGDILATAKIP 189 (257)
Q Consensus 160 l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 189 (257)
+++.=.+--++..+. +++..+++++....+
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAILESGRAD 315 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 666656766777776 788888888865544
No 151
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.14 E-value=2.7e+02 Score=25.59 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCChH--HHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQTEQ--PLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~--~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
+.++..+..+.+.+.|++.|=.--.-..+. ..=+++|+. --+++.|..-.+ ..++++... +.+++|
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~-------vG~~~~L~vDaN-~~w~~~~A~----~~~~~L 263 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV-------IGPDNKLMIDAN-QRWDVPEAI----EWVKQL 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh-------cCCCCeEEEECC-CCCCHHHHH----HHHHHh
Confidence 556677777888889999874322111111 112234443 123444444433 223444322 233333
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC----CeeEEEecCCCHHHHHHHHHhCCCCCc
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG----YTKAIGVSNFSCKKLGDILATAKIPPA 191 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~p~ 191 (257)
. -+++.++..|... +-++.+.+|++.. .=-+.|=|.++...+.++++...++
T Consensus 264 ~--~~~l~~iEEP~~~--------------------~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~d-- 319 (415)
T cd03324 264 A--EFKPWWIEEPTSP--------------------DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAID-- 319 (415)
T ss_pred h--ccCCCEEECCCCC--------------------CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCC--
Confidence 2 2466677877431 2356666676653 2234566778999999998876555
Q ss_pred eeccccCCCC---CcHHHHHHHHHCCceEEEec
Q 025159 192 ANQVEMNPLW---QQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 192 ~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~ 221 (257)
++|....-.. .-..+.+.|+++|+.+..++
T Consensus 320 il~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 320 VVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 7777765433 23688999999999998874
No 152
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=43.12 E-value=2.7e+02 Score=25.61 Aligned_cols=164 Identities=10% Similarity=0.011 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHHcC-CceeeCCCCCCChHHH--HHHHHHHHhC-CCCCCCCcEEEEeccCC---CCCChhhHHHHHHH
Q 025159 38 GSETTKLAILEAMKLG-YRHFDTATLYQTEQPL--GDAIAEALST-GIIKSRDELFIASKLWC---SDAHRELVVPALQK 110 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~G-i~~~DtA~~Yg~e~~l--g~~l~~~~~~-~~~~~R~~l~i~tK~~~---~~~~~~~i~~~l~~ 110 (257)
+.++...-...+++.| +|.|.- -.+..++.+ -.++++.+.. +....+..+.|=...|- ..++++...+.+.+
T Consensus 178 ~~d~m~~~a~~~~~~G~~~~~Kk-vG~~~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~ 256 (408)
T TIGR01502 178 NVDKMILKEVDVLPHGLINSVEE-LGLDGEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQT 256 (408)
T ss_pred CHHHHHHHHHHHHhccCccceee-ecCCHHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHH
Confidence 4466666777778887 888772 223222222 2233333211 10002334555444321 13344443333322
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc------CCeeEEEecCCCHHHHHHHHH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL------GYTKAIGVSNFSCKKLGDILA 184 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~ 184 (257)
. ++...+ +++ ++..|.+.. +.++.++.|.+|++. .-=-..+=|-++.+.+.++++
T Consensus 257 l-~~~~~~-~~~-~iEqPv~~~----------------d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~ 317 (408)
T TIGR01502 257 L-AEAAKP-FHL-RIEGPMDVG----------------SRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTD 317 (408)
T ss_pred H-HHhCcc-CCe-EEecCCCCC----------------cchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHH
Confidence 2 221111 355 788885421 113456777777755 333445777888999999988
Q ss_pred hCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecCC
Q 025159 185 TAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 185 ~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl 223 (257)
....+ ++|+..+-+. ...++.++|+++||+++..+..
T Consensus 318 ~~a~d--~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 318 AKAGH--MVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hCCCC--EEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 76655 7777766433 2378999999999999987665
No 153
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=43.01 E-value=53 Score=23.62 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecC
Q 025159 172 SNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 172 s~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~p 222 (257)
+.++...+.++++...++ ++|....-.. .-..+.+.|+++|+.++.++.
T Consensus 3 ~~~~~~~~~~li~~~a~d--~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVD--IVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCS--EEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCC--EEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 567888889998866655 7776654332 236899999999999999986
No 154
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=42.82 E-value=13 Score=24.21 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCcccc
Q 025159 239 EVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 239 ~~~~~ia~~~~~s~~qv 255 (257)
-.+.+||+++|+|+.+|
T Consensus 23 i~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTI 39 (60)
T ss_pred ccHHHHHHHHCCCHHHH
Confidence 36789999999998876
No 155
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.67 E-value=2.7e+02 Score=25.53 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=90.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~ 141 (257)
.||.+..+-++|++..+.. +-+-++|.|-+-+.-. -+.+..-+++. ++.+ ++++.++.|.....
T Consensus 67 V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-GdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~-------- 130 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-GDDVGAVVSEF-QEGG---APIVYLETGGFKGN-------- 130 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-hcCHHHHHHHh-hhcC---CCEEEEECCCcCcc--------
Confidence 4788888889998876543 3455667766543211 12333333333 4444 68999998865322
Q ss_pred ccCCCCccHHHHHHHHHH-H------HHcCCeeEEEecC-------CCHHHHHHHHHhCCCCCceeccccCCCC------
Q 025159 142 KEDFLPMDFKSVWEAMEE-C------QNLGYTKAIGVSN-------FSCKKLGDILATAKIPPAANQVEMNPLW------ 201 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~-l------~~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~p~~~q~~~~~~~------ 201 (257)
.....+.++++|-+ + ++.+.|.-||..+ -+.+++.++++..++++..+-...+.+.
T Consensus 131 ----~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~ 206 (427)
T cd01971 131 ----NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIP 206 (427)
T ss_pred ----cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcc
Confidence 01123444444443 2 2245688888642 3568899999998877543322111111
Q ss_pred ---------Cc--HHHHHHH-HHCCceEEEec--CCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 202 ---------QQ--NKLREFC-KAKDIQLAAYA--PLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 202 ---------~~--~~~~~~~-~~~gi~v~~~~--pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
+. ...-++. ++.|++.+... |.+- -....-++++++..|+..
T Consensus 207 ~A~~niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~---------~~t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 207 KAQFNLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGA---------KATAEFLRQVAKFAGIEK 262 (427)
T ss_pred cCcEEEEEcHhhHHHHHHHHHHHhCCceEecCCCccCH---------HHHHHHHHHHHHHhCCCh
Confidence 00 1233333 35688887752 4542 124577788888888764
No 156
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=42.67 E-value=2.1e+02 Score=24.13 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=94.6
Q ss_pred eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC---------CCChhhHHHHHHHHHHhhCCCcccEEEee
Q 025159 56 HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS---------DAHRELVVPALQKSLENLQLEYIDLYVIH 126 (257)
Q Consensus 56 ~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~---------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh 126 (257)
..|-...||+...+.+.++.+.+.|. .-++|--+.++. -.+.+...+.++...+...-- .|++.+-
T Consensus 73 ~~D~~~G~g~~~~~~~~v~~~~~~G~----~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiA 147 (243)
T cd00377 73 IADADTGYGNALNVARTVRELEEAGA----AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIA 147 (243)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCC----EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence 45666678877777777777765553 566664444322 235666677777776665532 6888888
Q ss_pred cCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHH
Q 025159 127 WPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKL 206 (257)
Q Consensus 127 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~ 206 (257)
+-+....+ ....+++++-.....+.|-=--+=.+-.+.++++++.+..+.+..+++.+... ..-
T Consensus 148 RTDa~~~~------------~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~----~~~ 211 (243)
T cd00377 148 RTDALLAG------------EEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGN----LLT 211 (243)
T ss_pred EcCchhcc------------CCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCC----CCC
Confidence 75443221 12478899999999999863222223348899999988866655555444321 135
Q ss_pred HHHHHHCCceEEEecCC
Q 025159 207 REFCKAKDIQLAAYAPL 223 (257)
Q Consensus 207 ~~~~~~~gi~v~~~~pl 223 (257)
.+.+++.|+..+.|.+.
T Consensus 212 ~~~l~~lG~~~v~~~~~ 228 (243)
T cd00377 212 VAELAELGVRRVSYGLA 228 (243)
T ss_pred HHHHHHCCCeEEEEChH
Confidence 77888999999998664
No 157
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.51 E-value=1.5e+02 Score=24.71 Aligned_cols=63 Identities=8% Similarity=0.175 Sum_probs=38.8
Q ss_pred HHHHHHHHHH-HHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 150 FKSVWEAMEE-CQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 150 ~~~~~~~l~~-l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..+.|+.|.+ ..++.-=-.||+.+- ++++++++++... . +-.+| ....+++++|+++||.++.
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA-~-----FiVsP-~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGA-N-----FIVTP-LFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC-C-----EEECC-CCCHHHHHHHHHcCCCEeC
Confidence 3456666643 223321125888776 7888888877543 2 12223 2235899999999998884
No 158
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=42.40 E-value=1.1e+02 Score=29.27 Aligned_cols=76 Identities=21% Similarity=0.164 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.+..++.+.+-+.++..+|+.||+-.+...++...++..+++++.+.=.|.-+...-.-++..-..|.-+..-+|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 4467899999999999999999999999999999999999886444333332222233445455555555544444
No 159
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=42.23 E-value=2.9e+02 Score=29.31 Aligned_cols=123 Identities=10% Similarity=0.008 Sum_probs=73.6
Q ss_pred hhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CCe--eEEEecCCCHHHHHHHHHhCCCCC
Q 025159 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYT--KAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
+-|.+.||+-.= .+ ..+.++.++.+..+.+. -.+ --|-|-+++++.++..++.+.-++
T Consensus 379 e~GA~iIDVn~~-~~------------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~ 439 (1178)
T TIGR02082 379 ENGAQILDINVD-YG------------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKC 439 (1178)
T ss_pred HCCCCEEEECCC-CC------------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCC
Confidence 568889998742 11 11233444444444443 212 347888999999999999877677
Q ss_pred ceeccccCCCC-CcHHHHHHHHHCCceEEEecCCCCCCCCCC-CCCccChHHHHHHHHH-hCCCccccc
Q 025159 191 AANQVEMNPLW-QQNKLREFCKAKDIQLAAYAPLGARGTIWG-SNRVMECEVLKEIAEA-KGKTVAQVL 256 (257)
Q Consensus 191 ~~~q~~~~~~~-~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~-~~~~~~~~~~~~ia~~-~~~s~~qva 256 (257)
.+|-++.--.. .-..+++.|+++|.+++.+.-=.. |.-.. ........+.-+.|.+ +|+++.++.
T Consensus 440 IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~-G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi 507 (1178)
T TIGR02082 440 IVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEE-GQARTADRKIEICKRAYNILTEKVGFPPEDII 507 (1178)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 78855442221 224799999999999999853222 43211 1111122444455555 999887664
No 160
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=41.97 E-value=2e+02 Score=23.88 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred CceeeCC-CCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC-------CChhhHHHHHHHHHHhhCCCcccEE
Q 025159 54 YRHFDTA-TLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD-------AHRELVVPALQKSLENLQLEYIDLY 123 (257)
Q Consensus 54 i~~~DtA-~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~-------~~~~~i~~~l~~sL~~Lg~d~lDl~ 123 (257)
++.++.- ..|+ +.+.+..|.++. .+++..+.|++..- ...+.+.+.+-+.++-|| +.+..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~~--------p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQT--------PEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCTS---------TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhhC--------CCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 4555442 2476 677788776643 58999999996421 124555466666999998 899999
Q ss_pred EeecCC
Q 025159 124 VIHWPV 129 (257)
Q Consensus 124 ~lh~p~ 129 (257)
++.-|-
T Consensus 90 L~Q~Pp 95 (230)
T PF01904_consen 90 LFQFPP 95 (230)
T ss_dssp EEE--T
T ss_pred EEEcCC
Confidence 999884
No 161
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=41.44 E-value=1.5e+02 Score=25.25 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=31.0
Q ss_pred cceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHH
Q 025159 27 LGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEA 76 (257)
Q Consensus 27 lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~ 76 (257)
+.|++...+..+.+...++++.+.+.|+..|=.++..| ...-+.+.++..
T Consensus 130 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 130 VEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 33555555556677777777777777777776666666 344455554443
No 162
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=41.39 E-value=1.8e+02 Score=27.67 Aligned_cols=68 Identities=10% Similarity=-0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHH-cCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 150 FKSVWEAMEECQN-LGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 150 ~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
..+++++|...++ .++|.-||+.+.. ..+..+.+..+++ +.++.|+.-..-...+..+++.|+.++..
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG 151 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVG 151 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEEC
Confidence 4567888888777 5688888887775 3445555555555 55555554444467899999999999874
No 163
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.20 E-value=88 Score=26.53 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=30.3
Q ss_pred cEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC
Q 025159 121 DLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (257)
Q Consensus 121 Dl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 175 (257)
+-++||-|.....+...+ ...-......++..+-++..+.. ---++|+.||.
T Consensus 78 ~evlih~PmeP~~~~~~e--~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhm 129 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIE--PGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHM 129 (250)
T ss_pred CEEEEeccCCcccCCCCC--CCCcccCCCHHHHHHHHHHHHhh-Cccceeehhhh
Confidence 457889886533222111 11222334567888888777753 34578999984
No 164
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=41.18 E-value=3.9e+02 Score=28.52 Aligned_cols=88 Identities=9% Similarity=0.035 Sum_probs=56.5
Q ss_pred EEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC-cHHHHHHHHHCCceEEEecCCCCCCCCCCC-CCccChHHHHHHH
Q 025159 168 AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ-QNKLREFCKAKDIQLAAYAPLGARGTIWGS-NRVMECEVLKEIA 245 (257)
Q Consensus 168 ~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~-~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~-~~~~~~~~~~~ia 245 (257)
-|-|-+++++.++..++...-++.+|-++.--... -..+++.|+++|.+++.+.-=.. |.-... ..+....++-+.+
T Consensus 433 PlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~-G~~~t~e~r~~ia~r~~~~~ 511 (1229)
T PRK09490 433 PIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQ-GQADTRERKIEICKRAYDIL 511 (1229)
T ss_pred eEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC-CCCCCHHHHHHHHHHHHHHH
Confidence 37888999999999999877778888555432221 24789999999999999853332 432110 1111124444445
Q ss_pred H-HhCCCccccc
Q 025159 246 E-AKGKTVAQVL 256 (257)
Q Consensus 246 ~-~~~~s~~qva 256 (257)
. ++|+++..+.
T Consensus 512 ~~~~Gi~~~dIi 523 (1229)
T PRK09490 512 TEEVGFPPEDII 523 (1229)
T ss_pred HHHcCCCHHHEE
Confidence 4 4898877653
No 165
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=40.76 E-value=2.6e+02 Score=24.85 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCceeeCCCC-------------------CC-C----hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC-
Q 025159 44 LAILEAMKLGYRHFDTATL-------------------YQ-T----EQPLGDAIAEALSTGIIKSRDELFIASKLWCSD- 98 (257)
Q Consensus 44 ~~l~~Al~~Gi~~~DtA~~-------------------Yg-~----e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~- 98 (257)
+..+.|.++|+..++.... || + -+.+-+.++...+. --+++.|..|+...+
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~----vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAA----VGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHH----cCCCceEEEEeccccc
Confidence 4445567899998876442 33 1 23333334333211 235778888885433
Q ss_pred ----CChhhHHHHHHHHHHhhCCCcccEE-Eeec-CCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec
Q 025159 99 ----AHRELVVPALQKSLENLQLEYIDLY-VIHW-PVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS 172 (257)
Q Consensus 99 ----~~~~~i~~~l~~sL~~Lg~d~lDl~-~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 172 (257)
.+.+... .+-+.|+..|+|++++- -.|. +....+ .. ...........++++.=.+--+++.
T Consensus 217 ~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~----------~~--~~~~~~~~~~~~ik~~v~iPVi~~G 283 (353)
T cd02930 217 VEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIA----------TS--VPRGAFAWATAKLKRAVDIPVIASN 283 (353)
T ss_pred CCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCcccc----------cc--CCchhhHHHHHHHHHhCCCCEEEcC
Confidence 2333332 34455788898888762 1231 111000 00 0011122344566665566667776
Q ss_pred CC-CHHHHHHHHHhCCCC
Q 025159 173 NF-SCKKLGDILATAKIP 189 (257)
Q Consensus 173 ~~-~~~~l~~~~~~~~~~ 189 (257)
++ +++.++++++....+
T Consensus 284 ~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 284 RINTPEVAERLLADGDAD 301 (353)
T ss_pred CCCCHHHHHHHHHCCCCC
Confidence 64 788899999876544
No 166
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.66 E-value=2.1e+02 Score=23.73 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=26.6
Q ss_pred CcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCC-CChHHHHHHHHHH
Q 025159 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLY-QTEQPLGDAIAEA 76 (257)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Y-g~e~~lg~~l~~~ 76 (257)
+.+|.++-|... +.+.+.+ +++.|+..+..+... .+...+.++.+.+
T Consensus 70 ~~~pv~~~GGI~----s~~d~~~----~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 70 VFIPLTVGGGIR----SLEDARR----LLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred CCCCEEEeCCCC----CHHHHHH----HHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 456666666555 3444444 444688877666543 3455566665554
No 167
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=40.58 E-value=1.6e+02 Score=26.95 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred HcCCceeeCCCCCC------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEE
Q 025159 51 KLGYRHFDTATLYQ------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYV 124 (257)
Q Consensus 51 ~~Gi~~~DtA~~Yg------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~ 124 (257)
+.|-+|+|....|+ +...+-+++++- -+.+..++.++. ..-...+-+.|.++-- ..|-++
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q--------~~kl~h~sn~~~-----~~~~~~la~~L~~~s~-~~d~vf 104 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQ--------AEKLWHVSNLFY-----NEPQAELAEKLVELSP-FADRVF 104 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHH--------HHHhhhcccccC-----ChHHHHHHHHHHhhCc-cccEEE
Confidence 35888999999886 466666777652 345555555443 2233334444443332 367777
Q ss_pred eecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH-cCCeeEEEecC--CCHHH--H-----HHHHHhC-CCCCcee
Q 025159 125 IHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN-LGYTKAIGVSN--FSCKK--L-----GDILATA-KIPPAAN 193 (257)
Q Consensus 125 lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~ir~iGvs~--~~~~~--l-----~~~~~~~-~~~p~~~ 193 (257)
.-+... +..+.+++.-..+-. .+|-+-|.+.| |.... + .+..+.. ...|.+.
T Consensus 105 f~NSGa-----------------EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~ 167 (404)
T COG4992 105 FCNSGA-----------------EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFR 167 (404)
T ss_pred EcCCcH-----------------HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCce
Confidence 766532 224445554444443 23334444322 11100 0 0111111 2445667
Q ss_pred ccccCCCCCcHHHHHHHHHCCceEEEecCCCCC-CCCCCCCCccChHHHHHHHHHhCC
Q 025159 194 QVEMNPLWQQNKLREFCKAKDIQLAAYAPLGAR-GTIWGSNRVMECEVLKEIAEAKGK 250 (257)
Q Consensus 194 q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~-G~l~~~~~~~~~~~~~~ia~~~~~ 250 (257)
+++||-.. -++.+-..++.-+...|+.+- |..-.+. ..-+.++++|++||+
T Consensus 168 ~vpfnDi~----al~~ai~~~taAvivEPIQGEgGV~~~~~--~fl~~lr~lCd~~g~ 219 (404)
T COG4992 168 HVPFNDIE----ALEAAIDEDTAAVIVEPIQGEGGVIPAPP--EFLKALRELCDEHGA 219 (404)
T ss_pred ecCCCCHH----HHHHHhccCeEEEEEecccCCCCCCCCCH--HHHHHHHHHHHHhCe
Confidence 77776332 222222226777777777542 3332222 233777888888874
No 168
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=40.49 E-value=1.5e+02 Score=23.54 Aligned_cols=91 Identities=11% Similarity=-0.041 Sum_probs=50.4
Q ss_pred HHHcCCeeEEEecCCCHHHH----HHHHHhCCCCCceeccccCCCCC--c--------HHHHHHHHHCCceEEEecC-CC
Q 025159 160 CQNLGYTKAIGVSNFSCKKL----GDILATAKIPPAANQVEMNPLWQ--Q--------NKLREFCKAKDIQLAAYAP-LG 224 (257)
Q Consensus 160 l~~~G~ir~iGvs~~~~~~l----~~~~~~~~~~p~~~q~~~~~~~~--~--------~~~~~~~~~~gi~v~~~~p-l~ 224 (257)
+.+...|..-|++..+...+ .+.+.....+.+++++--|=... . ..+++.++++++.++...+ +-
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 34456688899999987653 22222223444566665553322 0 4688889988877665431 21
Q ss_pred CCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 225 ARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 225 ~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
. ...........+.++++|+++++..
T Consensus 120 ~--~~~~~~~~~~~~~~~~~a~~~~v~~ 145 (191)
T PRK10528 120 A--NYGRRYNEAFSAIYPKLAKEFDIPL 145 (191)
T ss_pred C--cccHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 1100000112356788999998654
No 169
>PRK09875 putative hydrolase; Provisional
Probab=40.43 E-value=2.5e+02 Score=24.47 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCC-CC-ChHHHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATL-YQ-TEQPLGDAIAE 75 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~-Yg-~e~~lg~~l~~ 75 (257)
.+.+.+.+-++...+.|++ .+|.++. +| +-..+.+.-++
T Consensus 31 ~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~ 72 (292)
T PRK09875 31 DQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRE 72 (292)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHH
Confidence 3556666677777777775 7787765 45 55555554443
No 170
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=40.33 E-value=3.3e+02 Score=25.77 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCC
Q 025159 66 EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDF 145 (257)
Q Consensus 66 e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~ 145 (257)
.+-+|.+|++ +.+++|+..+-..+.....+..-+.+.+++-++..=-+ -|.-- +.
T Consensus 341 ~~dlG~~L~~---------~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lElT---------------ER 395 (524)
T COG4943 341 FRDLGDLLRQ---------HRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQI-ALELT---------------ER 395 (524)
T ss_pred HHHhHHHHHh---------CcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHh-eeehh---------------hh
Confidence 3456777773 56789999988877766788888888888877742111 11110 11
Q ss_pred CCccHHHHHHHHHHHHHcCCeeEE---EecCCCHHHHHHH-HHhCCCCCceecc-ccCCCCC--cHHHHHHHHHCCceEE
Q 025159 146 LPMDFKSVWEAMEECQNLGYTKAI---GVSNFSCKKLGDI-LATAKIPPAANQV-EMNPLWQ--QNKLREFCKAKDIQLA 218 (257)
Q Consensus 146 ~~~~~~~~~~~l~~l~~~G~ir~i---Gvs~~~~~~l~~~-~~~~~~~p~~~q~-~~~~~~~--~~~~~~~~~~~gi~v~ 218 (257)
..++......-+..+++.|.--+| |..--+...|..+ ++.-+|+=++++. .++.... -..+++.+++.|+.++
T Consensus 396 ~f~D~~~~~~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iV 475 (524)
T COG4943 396 TFADPKKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIV 475 (524)
T ss_pred hhcCchhhhHHHHHHHhcCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEE
Confidence 234466778889999999996555 3332233344443 1111222222221 2222111 2568999999999888
Q ss_pred Eec---------------CCCCCCCCCCCCCccChHHHHHHHHH
Q 025159 219 AYA---------------PLGARGTIWGSNRVMECEVLKEIAEA 247 (257)
Q Consensus 219 ~~~---------------pl~~~G~l~~~~~~~~~~~~~~ia~~ 247 (257)
+-+ ++| ||-+++++-+ .+.+-+++++
T Consensus 476 aEGVEteeQ~~~LR~~Gv~~g-QGW~fskaLp--~q~Fi~~~~q 516 (524)
T COG4943 476 AEGVETEEQVDWLRKRGVHYG-QGWLFSKALP--AQAFLDWAEQ 516 (524)
T ss_pred eecccHHHHHHHHHHcCCccc-cccccCCCCC--HHHHHHHHHh
Confidence 754 344 4666655433 2555555554
No 171
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=40.04 E-value=2.5e+02 Score=24.41 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCC-e-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 150 FKSVWEAMEECQNLGY-T-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~-i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.++.++.|.++++.|. + -.+|+-+.+.+.++.+.+.... ..-.+.++.++++|+.+.++--+
T Consensus 122 ~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~------------~~~~~ai~~l~~~gi~v~~~lI~ 185 (302)
T TIGR01212 122 PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDF------------ACYVDAVKRARKRGIKVCSHVIL 185 (302)
T ss_pred CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChH------------HHHHHHHHHHHHcCCEEEEeEEE
Confidence 3578889999999998 5 4799999998888766332110 01134566666666665544333
No 172
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=39.92 E-value=18 Score=32.87 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=38.8
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEe---------ccC-CCCCChhhHH
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIAS---------KLW-CSDAHRELVV 105 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~t---------K~~-~~~~~~~~i~ 105 (257)
.+.++=.+=+..|.+.|-. ..|.+.. |.-..+.+.+-+ +..+-|.| |-+ ..+.+++.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLStg-gdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLSTG-GDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---S-TTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCC-CCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 3555556778889999976 5576643 343334333322 22333332 111 2345778888
Q ss_pred HHHHHHHHhhCCCcccEEEeecC
Q 025159 106 PALQKSLENLQLEYIDLYVIHWP 128 (257)
Q Consensus 106 ~~l~~sL~~Lg~d~lDl~~lh~p 128 (257)
+.+++..+ +=+|.+-+|.-
T Consensus 143 ~~ie~qa~----~GVDfmtiH~g 161 (420)
T PF01964_consen 143 DVIEKQAK----DGVDFMTIHCG 161 (420)
T ss_dssp HHHHHHHH----HT--EEEE-TT
T ss_pred HHHHHHHH----cCCCEEEEccc
Confidence 88888777 45789999985
No 173
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.81 E-value=2.9e+02 Score=25.01 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=50.5
Q ss_pred HHHHHHHHHHc------CCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecC
Q 025159 153 VWEAMEECQNL------GYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 153 ~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~p 222 (257)
-++.+.+|.+. +-=-..|=+.++.+.+.++++....+ ++|...+-.. .-..+.+.|+.+||.++.++.
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~d--iv~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAH--MVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCC--EEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 46777777766 33345677888999999998876655 7777766533 236889999999999998754
No 174
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=39.79 E-value=1e+02 Score=29.06 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCcee--eCCCCC---C-------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC------------
Q 025159 42 TKLAILEAMKLGYRHF--DTATLY---Q-------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCS------------ 97 (257)
Q Consensus 42 ~~~~l~~Al~~Gi~~~--DtA~~Y---g-------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~------------ 97 (257)
.-+-..+..+.|++.+ =||.+| | +...+..+-+++|-.. -+..+||++-++.=
T Consensus 104 ~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g 180 (546)
T PF01175_consen 104 TWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAG 180 (546)
T ss_dssp SHHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT
T ss_pred CHHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcC
Confidence 3556666777888755 255554 2 3344455556665432 57889999988531
Q ss_pred ------CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 98 ------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 98 ------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
..+++ +.-+|+.+.|+|.+. . +++++++...+.+++|+...||+
T Consensus 181 ~v~l~vEvd~~-------ri~kR~~~g~ld~~~-~----------------------~ldea~~~~~ea~~~~~~~SIg~ 230 (546)
T PF01175_consen 181 GVGLIVEVDPS-------RIEKRLEQGYLDEVT-D----------------------DLDEALARAKEARAKKEPLSIGL 230 (546)
T ss_dssp -EEEEEES-HH-------HHHHHHHTTSSSEEE-S----------------------SHHHHHHHHHHHHHTT--EEEEE
T ss_pred ceEEEEEECHH-------HHHHHHhCCCeeEEc-C----------------------CHHHHHHHHHHhhccCCeeEEEE
Confidence 12333 344566778998764 1 27899999999999999999999
Q ss_pred cCCCHHHHHHHHHhCC-CCCceeccccC
Q 025159 172 SNFSCKKLGDILATAK-IPPAANQVEMN 198 (257)
Q Consensus 172 s~~~~~~l~~~~~~~~-~~p~~~q~~~~ 198 (257)
-..-.+.++++++..- ++...-|.+.+
T Consensus 231 ~GN~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 231 LGNAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp ES-HHHHHHHHHHTT---SEE---SSTT
T ss_pred eccHHHHHHHHHHcCCCCCcccCCCccc
Confidence 9999999999988742 33345566553
No 175
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=39.63 E-value=2.4e+02 Score=24.14 Aligned_cols=87 Identities=20% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCccceeCCcCCCCChh-HHHHHHHHHHHcCCceeeCCCCCC----C---hHHHHHHHHHHHhCCCCCCCCcEEEEeccC
Q 025159 24 MPVLGLGTAASPFSGSE-TTKLAILEAMKLGYRHFDTATLYQ----T---EQPLGDAIAEALSTGIIKSRDELFIASKLW 95 (257)
Q Consensus 24 vs~lglG~~~~~~~~~~-~~~~~l~~Al~~Gi~~~DtA~~Yg----~---e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~ 95 (257)
+-++.+=+..+ +.+ +...+.+.|.++|..|+=|+..|+ + -+.+-+.+++. +. .+. +-.|..
T Consensus 133 ~lKVIlEt~~L---~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~~---~~~--vgIKAs 201 (257)
T PRK05283 133 LLKVIIETGEL---KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---GV---AKT--VGFKPA 201 (257)
T ss_pred eEEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---cc---CCC--eeEEcc
Confidence 34555555553 556 488999999999999999999986 2 23333333322 11 122 445554
Q ss_pred CCCCChhhHHHHHHHHHHhhCCCccc
Q 025159 96 CSDAHRELVVPALQKSLENLQLEYID 121 (257)
Q Consensus 96 ~~~~~~~~i~~~l~~sL~~Lg~d~lD 121 (257)
..-.+.+....-++..-+.||.++++
T Consensus 202 GGIrt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 202 GGVRTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHhChhhcC
Confidence 44445688888899999999988765
No 176
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=39.41 E-value=85 Score=23.28 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCcee
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAAN 193 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~ 193 (257)
.+.+.+.++.+.+.|+--=+|.+.|+.++++++-+.+.--|.+.
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEE
Confidence 57788899999999998889999999999999888766544444
No 177
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.36 E-value=2.8e+02 Score=24.68 Aligned_cols=36 Identities=6% Similarity=-0.056 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCC
Q 025159 154 WEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIP 189 (257)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 189 (257)
|......++.=++--|++.+. +++.++++++....+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D 310 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD 310 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC
Confidence 455555665545666777765 789999998876544
No 178
>PRK05660 HemN family oxidoreductase; Provisional
Probab=39.14 E-value=2.9e+02 Score=24.87 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHH----HHHHHHHcCCeeEEE
Q 025159 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWE----AMEECQNLGYTKAIG 170 (257)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~G~ir~iG 170 (257)
+-+..+.+.+.+.++..++ ++++++.+|.+--. +.++ ........ ...++.|+ +.+.|.+.|..+ .+
T Consensus 167 Glpgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~-~gT~----l~~~~~~~--~~~~~~~~~~~~~~~~L~~~Gy~~-ye 237 (378)
T PRK05660 167 GLPDQSLEEALDDLRQAIA-LNPPHLSWYQLTIE-PNTL----FGSRPPVL--PDDDALWDIFEQGHQLLTAAGYQQ-YE 237 (378)
T ss_pred CCCCCCHHHHHHHHHHHHh-cCCCeEEeeccEec-cCCc----ccccCCCC--cCHHHHHHHHHHHHHHHHHcCCcE-ee
Confidence 3455677888888888766 99999999877632 1111 00000011 11222333 344577789865 79
Q ss_pred ecCCCHH
Q 025159 171 VSNFSCK 177 (257)
Q Consensus 171 vs~~~~~ 177 (257)
+|||...
T Consensus 238 i~~fa~~ 244 (378)
T PRK05660 238 TSAYAKP 244 (378)
T ss_pred cccccCC
Confidence 9999753
No 179
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=39.12 E-value=2.3e+02 Score=23.74 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCeeEEEecC-CCHHHHHHHHHhCCCCCceeccccC-CCCCcHHHHHHHHHCCceE
Q 025159 154 WEAMEECQNLGYTKAIGVSN-FSCKKLGDILATAKIPPAANQVEMN-PLWQQNKLREFCKAKDIQL 217 (257)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~p~~~q~~~~-~~~~~~~~~~~~~~~gi~v 217 (257)
|+.+.++.+.-.+.-|.-.. .+++.+.++++..++.-.++---++ ....-.++.+.|++.||.+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 34444454443444454443 3556777766654443222211111 1112256777777777754
No 180
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=38.43 E-value=2.6e+02 Score=24.04 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHcCCceeeCC----------CCCC-ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTA----------TLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVV 105 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA----------~~Yg-~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~ 105 (257)
.+.++..++.+.+.+.|+..+|.- ..|+ +.+.+.+.++.. . ..-++-|..|+.+. . +.+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v---r---~~~~~Pv~vKl~~~-~--~~~~ 169 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV---K---KATDVPVIVKLTPN-V--TDIV 169 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH---H---hccCCCEEEEeCCC-c--hhHH
Confidence 356788888888889999988762 2233 566777777765 1 11267888997542 2 2222
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCC--CCCCCCCCCcc---cCCC-CccHHHHHHHHHHHHHcCCeeEEEecCC-CHHH
Q 025159 106 PALQKSLENLQLEYIDLYVIHWPVSS--KPGSYEFPIKK---EDFL-PMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKK 178 (257)
Q Consensus 106 ~~l~~sL~~Lg~d~lDl~~lh~p~~~--~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 178 (257)
.+-+.+...|.|.+++. +-... ....+..|... ..+. .....-.++.+.++++.=.+--||+... +++.
T Consensus 170 -~~a~~~~~~G~d~i~~~---nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 170 -EIARAAEEAGADGLTLI---NTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred -HHHHHHHHcCCCEEEEE---CCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 23345677887666543 11000 00000001000 0000 0111235667777777656778888886 6888
Q ss_pred HHHHHHhCCCCCceeccccCCCC-C------cHHHHHHHHHCCc
Q 025159 179 LGDILATAKIPPAANQVEMNPLW-Q------QNKLREFCKAKDI 215 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~-~------~~~~~~~~~~~gi 215 (257)
+.+++... . +.+|+-=..+. + ..++-++.+++|.
T Consensus 246 a~~~l~~G-A--d~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 246 ALEFLMAG-A--SAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHcC-C--CEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 88888743 3 35554322222 1 1455566666553
No 181
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=37.94 E-value=2.9e+02 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=16.4
Q ss_pred cHHHHHHHHHCCceEEEec
Q 025159 203 QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 203 ~~~~~~~~~~~gi~v~~~~ 221 (257)
+...+..|++.||++++.-
T Consensus 164 e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 164 EDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred chHHHHHHHHcCCCEEEEe
Confidence 4678999999999999863
No 182
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=37.85 E-value=2.5e+02 Score=25.06 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=53.1
Q ss_pred HHHHcC-CeeEEEecCCCHHHHHHHHHhCCC-------------CCceeccccC-CCCCcHHHHHHHHHCCceEEEecCC
Q 025159 159 ECQNLG-YTKAIGVSNFSCKKLGDILATAKI-------------PPAANQVEMN-PLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 159 ~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~-------------~p~~~q~~~~-~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.+.+.. .++-+||++-+.+..+++.+..++ +.+++-++-. +-....++...|-++|+.|+.=.|+
T Consensus 20 al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPl 99 (343)
T TIGR01761 20 AFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPL 99 (343)
T ss_pred HHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCC
Confidence 344444 577899999988888777665442 2223322211 1112257788888999999999999
Q ss_pred CCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 224 GARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 224 ~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
+. ...+++.+.|++.|+-
T Consensus 100 a~----------~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 100 HP----------RDIQDLLRLAERQGRR 117 (343)
T ss_pred CH----------HHHHHHHHHHHHcCCE
Confidence 62 3457777778877753
No 183
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.30 E-value=1.9e+02 Score=25.18 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecCCCC
Q 025159 155 EAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 155 ~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
+.+..+.+.-.+ -..|=|-++.+.+.++++....+ ++|+...... .-..+.+.|+.+||.++..+.+.+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d--~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es 268 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRG--ALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFES 268 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCc--eEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccch
Confidence 566667665433 45677778888888888765444 5555554332 136899999999999998876654
No 184
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=37.19 E-value=2.4e+02 Score=23.35 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=51.7
Q ss_pred ceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHH--HHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhH
Q 025159 28 GLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELV 104 (257)
Q Consensus 28 glG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg--~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i 104 (257)
.+-+.. .+.++...+.+.|.+.|..++=|+..|+ ...-++ +.+++. -++. +-.|....--+.+..
T Consensus 123 IlE~~~---L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~-------v~~~--v~IKaaGGirt~~~a 190 (211)
T TIGR00126 123 IIETGL---LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT-------VGDT--IGVKASGGVRTAEDA 190 (211)
T ss_pred EEecCC---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH-------hccC--CeEEEeCCCCCHHHH
Confidence 344444 4567888999999999999999998885 212222 234443 1222 334443222256888
Q ss_pred HHHHHHHHHhhCCCc
Q 025159 105 VPALQKSLENLQLEY 119 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~ 119 (257)
.+-++.--.|+|++.
T Consensus 191 ~~~i~aGa~riGts~ 205 (211)
T TIGR00126 191 IAMIEAGASRIGASA 205 (211)
T ss_pred HHHHHHhhHHhCcch
Confidence 888888889999864
No 185
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=36.40 E-value=3.6e+02 Score=25.16 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSR-DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R-~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
.||.++.|-++|++..+.. +. +-++|.|-+...-. -+.+..-+++.-++++ ++++.+|.|.....
T Consensus 112 VfGGe~kL~~aI~e~~~~~---~P~~~I~V~tTC~~~lI-GDDi~av~~~~~~~~~---~pVi~v~t~gf~G~------- 177 (466)
T TIGR01282 112 VFGGDKKLKKAIDEIEELF---PLNKGISIQSECPVGLI-GDDIEAVAKKASKELG---KPVVPVRCEGFRGV------- 177 (466)
T ss_pred ecCcHHHHHHHHHHHHHhC---CcccEEEEeCCChHHHh-ccCHHHHHHHHhhhcC---CcEEEEeCCCcCCc-------
Confidence 4678888899998886554 33 56778777654211 1233333444333444 58899998865310
Q ss_pred cccCCCCccHHHHHHHHHH-HH----------HcCCeeEEEecCC--CHHHHHHHHHhCCCCCceeccccCC--------
Q 025159 141 KKEDFLPMDFKSVWEAMEE-CQ----------NLGYTKAIGVSNF--SCKKLGDILATAKIPPAANQVEMNP-------- 199 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~-l~----------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q~~~~~-------- 199 (257)
........+.+++-+ +. ..++|--||-.|+ +.+++.++++..++++...-..-..
T Consensus 178 ----s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~~ 253 (466)
T TIGR01282 178 ----SQSLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENAP 253 (466)
T ss_pred ----hhhHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcc
Confidence 000112223333332 22 1367888885554 5677999999888764321111000
Q ss_pred ------CC-Cc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCC
Q 025159 200 ------LW-QQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGK 250 (257)
Q Consensus 200 ------~~-~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~ 250 (257)
.. .. ..+-++.+ ++||+.+..+|++- - -...-+.++|+-.|.
T Consensus 254 ~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi---~------~T~~~Lr~ia~~~g~ 305 (466)
T TIGR01282 254 KAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGP---T------KIAESLRKIAEFFDD 305 (466)
T ss_pred cCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCH---H------HHHHHHHHHHHHHCc
Confidence 00 01 12345555 45999998876542 1 134555666666554
No 186
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=36.25 E-value=3.5e+02 Score=25.02 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCC-eeEEEecCCCHHHHHHHHHhCCCCCcee-----ccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 152 SVWEAMEECQNLGY-TKAIGVSNFSCKKLGDILATAKIPPAAN-----QVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 152 ~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~p~~~-----q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
-+....+.++++|. ++++.|.+-....++++.+.-+.+..++ -.......+-+++...|+++||.+++=..-+-
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQav 222 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAV 222 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhc
Confidence 45566667788886 5888888665555555555444332222 11222223337889999999998776655543
No 187
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.19 E-value=2.7e+02 Score=23.66 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHHHHHHHcC-CceeeCCCCCC-C----hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 44 LAILEAMKLG-YRHFDTATLYQ-T----EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 44 ~~l~~Al~~G-i~~~DtA~~Yg-~----e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
.-+...+..+ ..++..++.-+ + -..+...+++. + .+-....+...+.+...++..+... ..+|+
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~---~------g~~~i~Hlt~r~~n~~~l~~~L~~~-~~~Gi 87 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQE---G------GIEPIPHLTCRDRNRIELQSILLGA-HALGI 87 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHh---c------CCCeeeecccCCCCHHHHHHHHHHH-HHCCC
Confidence 3334455554 88888777655 2 11222223322 1 1112222333345556666666665 55676
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC---------HHHHHHHHHh--C
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS---------CKKLGDILAT--A 186 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---------~~~l~~~~~~--~ 186 (257)
+ +++.|.. +....++.... .......-.++++.+..+. |....||+..|. ..+++.+.+. +
T Consensus 88 ~--~iL~l~G-D~~~~~~~~~~---~~~~~~~a~~Li~~i~~~~--~~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~a 159 (274)
T cd00537 88 R--NILALRG-DPPKGGDQPGA---KPVGFVYAVDLVELIRKEN--GGGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDA 159 (274)
T ss_pred C--eEEEeCC-CCCCCCCCCCC---CCCCCCCHHHHHHHHHHhc--CCCCccccccCCCcCCCCCCHHHHHHHHHHHHHC
Confidence 4 4666643 22111110000 0011222333444333332 344568887663 2234444333 3
Q ss_pred CCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcc
Q 025159 187 KIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 187 ~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
+....+-|.-|++- .-.+.++.|++.||.+ |+-- |+. ++.....+..+++..|+..+
T Consensus 160 GA~f~iTQ~~fd~~-~~~~~~~~~~~~gi~v----PIi~-GI~----p~~s~~~l~~~~~~~Gv~vP 216 (274)
T cd00537 160 GADFIITQLFFDND-AFLRFVDRCRAAGITV----PIIP-GIM----PLTSYKQAKRFAKLCGVEIP 216 (274)
T ss_pred CCCEEeecccccHH-HHHHHHHHHHHcCCCC----CEEe-ecc----ccCCHHHHHHHHHhhCCCCC
Confidence 46667788777541 1256888899998532 3322 443 22334555666665565443
No 188
>PRK13561 putative diguanylate cyclase; Provisional
Probab=36.18 E-value=4e+02 Score=25.66 Aligned_cols=117 Identities=11% Similarity=0.147 Sum_probs=73.4
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee
Q 025159 88 LFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK 167 (257)
Q Consensus 88 l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 167 (257)
+.|+..+......-..+...+.+.|++.+.+ ..-+.+.-++... ....+.+.+.++.|++.|--
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~--------------~~~~~~~~~~~~~l~~~G~~- 549 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQ-PGTLILEVTESRR--------------IDDPHAAVAILRPLRNAGVR- 549 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCC-hHHEEEEEchhhh--------------hcCHHHHHHHHHHHHHCCCE-
Confidence 4566666555544467888999999999875 3555566543321 12356788999999999984
Q ss_pred EEEecCCCH--HHHHHHHHhCCCCCceeccccCCCC---Cc----HHHHHHHHHCCceEEEec
Q 025159 168 AIGVSNFSC--KKLGDILATAKIPPAANQVEMNPLW---QQ----NKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 168 ~iGvs~~~~--~~l~~~~~~~~~~p~~~q~~~~~~~---~~----~~~~~~~~~~gi~v~~~~ 221 (257)
|++.+|+. ..+..+......+++.+-+.-+... .+ +.++..|+..|+.+++-.
T Consensus 550 -i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg 611 (651)
T PRK13561 550 -VALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG 611 (651)
T ss_pred -EEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec
Confidence 77777652 2344443323344444444322221 11 568999999999999864
No 189
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=36.04 E-value=1.8e+02 Score=21.57 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC--cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQLE--YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d--~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.|=.+.|+-|+......++.+++.+.++++..... -.|++++..+.... .+..++.+.|..|.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~---------------~~~~~l~~~l~~ll 108 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR---------------ATAKQAVAELAQLM 108 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc---------------CCHHHHHHHHHHHH
Confidence 57778888887666677899999999998765432 46999999875432 23556666666654
Q ss_pred H
Q 025159 162 N 162 (257)
Q Consensus 162 ~ 162 (257)
+
T Consensus 109 ~ 109 (120)
T PRK04390 109 A 109 (120)
T ss_pred H
Confidence 4
No 190
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.89 E-value=2.7e+02 Score=23.46 Aligned_cols=156 Identities=15% Similarity=0.024 Sum_probs=90.9
Q ss_pred eecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEE-----
Q 025159 15 VPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELF----- 89 (257)
Q Consensus 15 ~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~----- 89 (257)
++||.| +.++.|.+=-..-+-...--..+.+.-+++.|.+.- .+.+|.-+.+.|++.-+-++ +-.+.+
T Consensus 19 krLGGG-iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~----yvsTe~T~refi~qm~sl~y--dv~~~~l~G~l 91 (235)
T COG2874 19 KRLGGG-IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVT----YVSTELTVREFIKQMESLSY--DVSDFLLSGRL 91 (235)
T ss_pred hhccCC-CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEE----EEEechhHHHHHHHHHhcCC--CchHHHhccee
Confidence 456776 777766553222111122334677777889998754 23356667777765422233 233333
Q ss_pred --EEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee
Q 025159 90 --IASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK 167 (257)
Q Consensus 90 --i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 167 (257)
+.+.+.+-..++..-+.-++..++....-.-|++.+...+.....+ ....+.+.+..+..|.+.||+-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEE
Confidence 3333334344556666667777777777678999999876543211 0123556777777788899997
Q ss_pred EEEecCC--CHHHHHHHHHhCC
Q 025159 168 AIGVSNF--SCKKLGDILATAK 187 (257)
Q Consensus 168 ~iGvs~~--~~~~l~~~~~~~~ 187 (257)
-+-+..+ +.+.+-++...+.
T Consensus 162 ilTvhp~~l~e~~~~rirs~~d 183 (235)
T COG2874 162 ILTVHPSALDEDVLTRIRSACD 183 (235)
T ss_pred EEEeChhhcCHHHHHHHHHhhh
Confidence 7776543 4555566655554
No 191
>PLN02775 Probable dihydrodipicolinate reductase
Probab=35.74 E-value=2.7e+02 Score=24.32 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC
Q 025159 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (257)
Q Consensus 108 l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 187 (257)
+++.|..+.-+|.|++++..- .++.+.+.++.+.+.|+--=||.+.|+.+++.++.+...
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT--------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~ 127 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYT--------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESG 127 (286)
T ss_pred HHHHHHHhhccCCCEEEEECC--------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCC
Confidence 344454444457897777753 257788899999999998889999999999988866433
Q ss_pred CCCceeccccCC
Q 025159 188 IPPAANQVEMNP 199 (257)
Q Consensus 188 ~~p~~~q~~~~~ 199 (257)
+ |.+.--||++
T Consensus 128 i-~vv~apNfSi 138 (286)
T PLN02775 128 V-YAVIAPQMGK 138 (286)
T ss_pred c-cEEEECcccH
Confidence 3 4555455554
No 192
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=35.49 E-value=63 Score=25.25 Aligned_cols=48 Identities=17% Similarity=0.428 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCC---cEEEEeccCCC----------CCChhhHHHHHHHHHH
Q 025159 65 TEQPLGDAIAEALSTGIIKSRD---ELFIASKLWCS----------DAHRELVVPALQKSLE 113 (257)
Q Consensus 65 ~e~~lg~~l~~~~~~~~~~~R~---~l~i~tK~~~~----------~~~~~~i~~~l~~sL~ 113 (257)
++..+.++..+.+++|++ +|+ |++|++-+|-+ .+.+.....++++.++
T Consensus 83 aQ~AVAkAVadsveegii-p~e~~dd~vvi~svfv~~~a~d~~kiY~ynY~A~klAi~rAm~ 143 (170)
T COG1795 83 AQAAVAKAVADSVEEGII-PREQADDVVVIVSVFVHPEAEDKRKIYQYNYGATKLAIKRAME 143 (170)
T ss_pred HHHHHHHHHHHHHHhcCC-ChhHhcCEEEEEEeEeCcccccHHHHHHHhHHHHHHHHHHHHc
Confidence 678888899888888877 665 68888777643 1234555666666655
No 193
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=27 Score=29.57 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHHHHcCCc
Q 025159 36 FSGSETTKLAILEAMKLGYR 55 (257)
Q Consensus 36 ~~~~~~~~~~l~~Al~~Gi~ 55 (257)
+.+.|++.+++.+|+++|+-
T Consensus 182 dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhc
Confidence 38999999999999999973
No 194
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.44 E-value=3.1e+02 Score=24.15 Aligned_cols=133 Identities=8% Similarity=0.010 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHHHcCCceee----------CCCCCC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCCh
Q 025159 37 SGSETTKLAILEAMKLGYRHFD----------TATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~D----------tA~~Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~ 101 (257)
.++++..++.+.+.+.|+..+| +...|| ..+.+.+.++...+ .-++-|+.|+.....+.
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~------~~~~PVsvKiR~g~~~~ 137 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQE------AVNIPVTVKHRIGIDPL 137 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHH------HhCCCeEEEEecCCCCc
Confidence 5778888888888889999998 444566 35556666666521 12456889985432111
Q ss_pred hhHH--HHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEecCC-CHH
Q 025159 102 ELVV--PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNF-SCK 177 (257)
Q Consensus 102 ~~i~--~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~ 177 (257)
+... ..+-+.+...| +|.+.+|.-.....+-.. ..+... ..--|+...++++.- .|--||..+- +.+
T Consensus 138 ~~~~~~~~~~~~l~~~G---~~~itvHgRt~~~qg~sg--~~~~~~----~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 138 DSYEFLCDFVEIVSGKG---CQNFIVHARKAWLSGLSP--KENREI----PPLRYERVYQLKKDFPHLTIEINGGIKNSE 208 (318)
T ss_pred chHHHHHHHHHHHHHcC---CCEEEEeCCchhhcCCCc--cccccC----CchhHHHHHHHHHhCCCCcEEEECCcCCHH
Confidence 2112 23334555566 688999976431111000 000000 112466677777765 6777877654 566
Q ss_pred HHHHHHH
Q 025159 178 KLGDILA 184 (257)
Q Consensus 178 ~l~~~~~ 184 (257)
.+.+.+.
T Consensus 209 da~~~l~ 215 (318)
T TIGR00742 209 QIKQHLS 215 (318)
T ss_pred HHHHHHh
Confidence 7777765
No 195
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.43 E-value=3.4e+02 Score=24.63 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=93.4
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCC
Q 025159 58 DTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYE 137 (257)
Q Consensus 58 DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~ 137 (257)
+..-.||.+..+-++|++..+.. +.+-++|.|-+-+.-. .+.+..-+++.-++.+ +.++.+|.|.....
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~i-GdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~---- 131 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERY---HPKAVFVYSTCVVALI-GDDIDAVCKTASEKFG---IPVIPVHSPGFVGN---- 131 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhC---CCCEEEEECCCchhhh-ccCHHHHHHHHHHhhC---CCEEEEECCCcccC----
Confidence 33345788999999999887654 3456777777644311 1233333333333333 57888888754211
Q ss_pred CCCcccCCCCccHHHHHHHHHHHH---------HcCCeeEEEecCC--CHHHHHHHHHhCCCCCceeccccCCC------
Q 025159 138 FPIKKEDFLPMDFKSVWEAMEECQ---------NLGYTKAIGVSNF--SCKKLGDILATAKIPPAANQVEMNPL------ 200 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q~~~~~~------ 200 (257)
.....+.++++|-+.. +.+.|--||-.++ +.+.+.++++..++++...-.....+
T Consensus 132 --------~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 203 (410)
T cd01968 132 --------KNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRA 203 (410)
T ss_pred --------hhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhh
Confidence 1122344555554433 1467888884443 45678999998887743221111010
Q ss_pred ---------CCc--HHHHHHH-HHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 201 ---------WQQ--NKLREFC-KAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 201 ---------~~~--~~~~~~~-~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
++. ..+-++. +++|++.+...|++- -....-++++|+..|.+
T Consensus 204 ~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~---------~~t~~~l~~ia~~~g~~ 257 (410)
T cd01968 204 HRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGI---------RDTSKSLRNIAELLGDE 257 (410)
T ss_pred hhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcH---------HHHHHHHHHHHHHhCCc
Confidence 010 1233333 466999887666532 12467889999988875
No 196
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.38 E-value=1.2e+02 Score=28.17 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=48.0
Q ss_pred CCCccHHHHHHHHHHHHHcCC--eeEEE--ecCCCH------HHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHH
Q 025159 145 FLPMDFKSVWEAMEECQNLGY--TKAIG--VSNFSC------KKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCK 211 (257)
Q Consensus 145 ~~~~~~~~~~~~l~~l~~~G~--ir~iG--vs~~~~------~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~ 211 (257)
.-+.+++++++..+.|.++|. |.-+| ++.|.. ..|.+|++...--+-+..+.++..++ .+++++..+
T Consensus 170 ~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~ 249 (437)
T COG0621 170 ERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIA 249 (437)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHh
Confidence 345668999999999999998 44444 223321 12333333221112244445554444 478999999
Q ss_pred HC-CceEEEecCCCC
Q 025159 212 AK-DIQLAAYAPLGA 225 (257)
Q Consensus 212 ~~-gi~v~~~~pl~~ 225 (257)
+. .+--.-+=|+.+
T Consensus 250 ~~~kv~~~lHlPvQs 264 (437)
T COG0621 250 ETPKVCPHLHLPVQS 264 (437)
T ss_pred cCCcccccccCcccc
Confidence 85 555566667766
No 197
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=35.27 E-value=2.5e+02 Score=22.99 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhCC-CCCce----------------------eccccCCCC-----CcHHHHHH
Q 025159 158 EECQNLGYTKAIGVSNFSCKKLGDILATAK-IPPAA----------------------NQVEMNPLW-----QQNKLREF 209 (257)
Q Consensus 158 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~p~~----------------------~q~~~~~~~-----~~~~~~~~ 209 (257)
+.+++.|....+=+++|+.+.+..+.+... ++..+ ++.++.... ...++++.
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRL 189 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHH
Confidence 344455666778899999999988877543 11100 011111110 01578889
Q ss_pred HHHCCceEEEec
Q 025159 210 CKAKDIQLAAYA 221 (257)
Q Consensus 210 ~~~~gi~v~~~~ 221 (257)
|+++|+.+.+|.
T Consensus 190 ~~~~G~~v~~WT 201 (226)
T cd08568 190 LRKLGLKIVLWT 201 (226)
T ss_pred HHHCCCEEEEEc
Confidence 999999999994
No 198
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.23 E-value=3.1e+02 Score=24.01 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe-eEEEecCCCHHH
Q 025159 100 HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT-KAIGVSNFSCKK 178 (257)
Q Consensus 100 ~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~ 178 (257)
..+.+++-.+++|..=++ +-|-.=-+|++ -.+++++-|+++.++=-| --+|+-+.+-..
T Consensus 98 pvevLre~ye~aL~~~~V--VGLsIgTRPDC------------------lpd~VldlL~e~~~r~~vWvELGLQT~h~~T 157 (312)
T COG1242 98 PVEVLREMYEQALSEAGV--VGLSIGTRPDC------------------LPDDVLDLLAEYNKRYEVWVELGLQTAHDKT 157 (312)
T ss_pred cHHHHHHHHHHHhCcCCe--eEEeecCCCCC------------------CcHHHHHHHHHHhhheEEEEEeccchhhHHH
Confidence 457778888888875443 22222234544 256888888888887322 346888877777
Q ss_pred HHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 179 LGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++.+....++. .. .+.+..|+++||.|.++--++.
T Consensus 158 lk~iNRgHd~~--~y----------~dav~r~rkrgIkvc~HiI~GL 192 (312)
T COG1242 158 LKRINRGHDFA--CY----------VDAVKRLRKRGIKVCTHLINGL 192 (312)
T ss_pred HHHHhcccchH--HH----------HHHHHHHHHcCCeEEEEEeeCC
Confidence 77765544432 11 3678899999999999977754
No 199
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.13 E-value=2.1e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCC
Q 025159 38 GSETTKLAILEAMKLGYRHFDTAT 61 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~ 61 (257)
.+|.....++.|++.|.+.|++--
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv 34 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDV 34 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEe
Confidence 468899999999999999886543
No 200
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=35.12 E-value=2.9e+02 Score=25.42 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~ 141 (257)
.||.+..+-+++++..+.. +.+-++|.|-+-+.- -.+.+..-+++.-++.....+.++.++.|.....
T Consensus 65 VfGg~~kL~~aI~~~~~~~---~P~~I~V~ttc~~~i-iGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~-------- 132 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQY---NPEVIGIATTCLSET-IGEDVPRIIREFREEVDDSEPKIIPASTPGYGGT-------- 132 (429)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHHH-hhcCHHHHHHHHhhcccCCCCcEEEEECCCCccc--------
Confidence 4778889999998886553 234456666553321 1122222232222221112367888888754211
Q ss_pred ccCCCCccHHHHHHHHHH-H----HHcCCeeEEEec--CCCHHHHHHHHHhCCCCC
Q 025159 142 KEDFLPMDFKSVWEAMEE-C----QNLGYTKAIGVS--NFSCKKLGDILATAKIPP 190 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~-l----~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~p 190 (257)
.....+.++++|-+ + ++.++|--||-. --+.+++.++++..++.+
T Consensus 133 ----~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 133 ----HVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred ----HHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 01123334444433 2 225678888743 335678889999888775
No 201
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.07 E-value=3.2e+02 Score=24.81 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=59.3
Q ss_pred EEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH-HcCC---eeEEEec--CCCHHHHHHHHHhCC-C---CCc
Q 025159 122 LYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ-NLGY---TKAIGVS--NFSCKKLGDILATAK-I---PPA 191 (257)
Q Consensus 122 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~---~p~ 191 (257)
.+-||.+++....... |.. ...+++++.+++.++. +.|+ ++++=+. |-+.+.++++.+... . ...
T Consensus 241 avSLha~d~e~R~~l~-p~n----~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~ 315 (373)
T PRK14459 241 AVSLHAPDDELRDELV-PVN----TRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVH 315 (373)
T ss_pred EEEeCCCCHHHHHHhc-Ccc----cCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeE
Confidence 4678888664331111 000 0134788888887776 4454 4555444 344555555544333 2 456
Q ss_pred eeccccCCCCC-----c-----HHHHHHHHHCCceEEEecCCCC
Q 025159 192 ANQVEMNPLWQ-----Q-----NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 192 ~~q~~~~~~~~-----~-----~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++-++||+... . ....+..+++||.+......+.
T Consensus 316 VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 316 VNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 88889998542 1 3567778899999998877754
No 202
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.02 E-value=40 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCceEEEecCCC
Q 025159 204 NKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 204 ~~~~~~~~~~gi~v~~~~pl~ 224 (257)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 689999999999999997763
No 203
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=34.89 E-value=2.6e+02 Score=22.96 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQ 116 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg 116 (257)
.+.++-.+++..+++.|+.++|.--....+...-...... .+..+.++..-+....+.+.+...+++.. .+|
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~-------~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~g 143 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK-------GGTKIILSYHDFEKTPSWEELIELLEEMQ-ELG 143 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH-------TTSEEEEEEEESS---THHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh-------CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hcC
Confidence 4667889999999999999999876632222222222222 46778887775554444455666555554 688
Q ss_pred CCcccEEE
Q 025159 117 LEYIDLYV 124 (257)
Q Consensus 117 ~d~lDl~~ 124 (257)
.|.+=+..
T Consensus 144 adivKia~ 151 (224)
T PF01487_consen 144 ADIVKIAV 151 (224)
T ss_dssp -SEEEEEE
T ss_pred CCeEEEEe
Confidence 65444443
No 204
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.84 E-value=3.3e+02 Score=24.29 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=83.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC--CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFP 139 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~--~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~ 139 (257)
.||.++-+-+++.+..... ..+-++|.+-+-+. ..+.+.+.+.++. ..+ +.++.++.+.....
T Consensus 61 v~Gg~e~l~~~i~~~~~~~---~p~~i~v~~tc~~~liGdDi~~v~~~~~~---~~~---~~vv~~~~~gf~~~------ 125 (399)
T cd00316 61 VFGGGEKLLEAIINELKRY---KPKVIFVYTTCTTELIGDDIEAVAKEASK---EIG---IPVVPASTPGFRGS------ 125 (399)
T ss_pred eeCCHHHHHHHHHHHHHHc---CCCEEEEecCchhhhhccCHHHHHHHHHH---hhC---CceEEeeCCCCccc------
Confidence 4664444445554444332 22556666665432 2233444444443 333 67888888754310
Q ss_pred CcccCCCCccHHHHHHHHHHHH---------HcCCeeEEEecCC---CHHHHHHHHHhCCCCCceeccc-----------
Q 025159 140 IKKEDFLPMDFKSVWEAMEECQ---------NLGYTKAIGVSNF---SCKKLGDILATAKIPPAANQVE----------- 196 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~p~~~q~~----------- 196 (257)
.....+.++++|.+.. +.+.|--||.++. +.+++.++++..++++...--.
T Consensus 126 ------~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~ 199 (399)
T cd00316 126 ------QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELG 199 (399)
T ss_pred ------HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhc
Confidence 0112344444544332 2456888898876 6688999999888664332111
Q ss_pred ---cCCCC-C--cHHHHHHHHHC-CceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhC
Q 025159 197 ---MNPLW-Q--QNKLREFCKAK-DIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKG 249 (257)
Q Consensus 197 ---~~~~~-~--~~~~~~~~~~~-gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~ 249 (257)
+|+.. + ...+-++.+++ |++.+...|++- --...-++++++..|
T Consensus 200 ~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~---------~~t~~~l~~i~~~~g 250 (399)
T cd00316 200 NAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGL---------EATDAFLRKLAELFG 250 (399)
T ss_pred cCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCH---------HHHHHHHHHHHHHhC
Confidence 11111 1 12345555544 999998887753 113455566666555
No 205
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=34.81 E-value=2.4e+02 Score=22.69 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=25.6
Q ss_pred ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 120 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
+|.++||..++ . +..+.+.+......++.||++++...++
T Consensus 74 ~d~Vqlhg~e~-------------------~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES-------------------P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC-------------------H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 68999998531 1 2334444433456789999998876544
No 206
>PRK07328 histidinol-phosphatase; Provisional
Probab=34.58 E-value=2.9e+02 Score=23.46 Aligned_cols=139 Identities=15% Similarity=0.231 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHH----HHHHHHHHcCCeeEEEecCC------
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVW----EAMEECQNLGYTKAIGVSNF------ 174 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~G~ir~iGvs~~------ 174 (257)
...+++.|+....||+ +.-+|+...+.-.. +.....+...+.++++ +.+.++.+.|.+.-+|=-+.
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~---~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~ 169 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDN---PDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGH 169 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCC---hhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCC
Confidence 4555666777777776 77789864321100 0000011112334444 45788888888777763322
Q ss_pred -C----HHHHHHHH---HhCCCCCceeccccC----CCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCcc-ChHHH
Q 025159 175 -S----CKKLGDIL---ATAKIPPAANQVEMN----PLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVM-ECEVL 241 (257)
Q Consensus 175 -~----~~~l~~~~---~~~~~~p~~~q~~~~----~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~-~~~~~ 241 (257)
. ...+++++ ...++...+|-..+. -..+...+++.|++.|+.++.-| =+. .+..+- .-+..
T Consensus 170 ~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigS-DAH-----~~~~vg~~~~~a 243 (269)
T PRK07328 170 RPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGS-DAH-----RPEEVGFGFAEA 243 (269)
T ss_pred CCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeC-CCC-----CHHHHhccHHHH
Confidence 1 11223333 333344444432111 11223578899999988854432 111 011111 23667
Q ss_pred HHHHHHhCCCcc
Q 025159 242 KEIAEAKGKTVA 253 (257)
Q Consensus 242 ~~ia~~~~~s~~ 253 (257)
.+++++.|.+..
T Consensus 244 ~~~l~~~G~~~~ 255 (269)
T PRK07328 244 LALLKEVGYTET 255 (269)
T ss_pred HHHHHHcCCcEE
Confidence 788888886543
No 207
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=34.36 E-value=1.7e+02 Score=26.66 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCC--e-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEe
Q 025159 152 SVWEAMEECQNLGY--T-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 152 ~~~~~l~~l~~~G~--i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~ 220 (257)
+-++.+.+|++.-. | -.-|-+.++...+.++++...++ ++|....-+. .-..+.+.|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~D--ivq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCID--IIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCC--EEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 34677888887654 2 23378888999999998876655 8887766443 2368899999999998776
No 208
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.34 E-value=3.1e+02 Score=24.57 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHcC-C---eeEEEe--cCCCHHHHHHHHHhCC-CCCceeccccCCCCC-------c---HHHHHHHH
Q 025159 149 DFKSVWEAMEECQNLG-Y---TKAIGV--SNFSCKKLGDILATAK-IPPAANQVEMNPLWQ-------Q---NKLREFCK 211 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G-~---ir~iGv--s~~~~~~l~~~~~~~~-~~p~~~q~~~~~~~~-------~---~~~~~~~~ 211 (257)
+.++++++++.+.+.+ . ++++=+ -|-+.+.++++.+... .+..++-++||+... . ....+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 3688999999887643 2 344433 3455567666666543 445677778888652 1 34566788
Q ss_pred HCCceEEEecCCCC
Q 025159 212 AKDIQLAAYAPLGA 225 (257)
Q Consensus 212 ~~gi~v~~~~pl~~ 225 (257)
++|+.+......+.
T Consensus 324 ~~gi~v~ir~~~g~ 337 (356)
T PRK14455 324 KNGVNCTIRREHGT 337 (356)
T ss_pred HCCCcEEEeCCCCc
Confidence 99999988776653
No 209
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=34.29 E-value=1.3e+02 Score=27.46 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcC-CeeEEEecCC---CHHHHHHHHHhCCCCCceec---cccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 150 FKSVWEAMEECQNLG-YTKAIGVSNF---SCKKLGDILATAKIPPAANQ---VEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G-~ir~iGvs~~---~~~~l~~~~~~~~~~p~~~q---~~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
...+++.+..|.++| .|.++.|-.. ++++|++++...- ..+.++ .+.-.+.+=.++-+.|+++|+.+..=..
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T-~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT-ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc-eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 568899999997778 6999999877 4666666655221 111111 1111222237899999999976655443
Q ss_pred C
Q 025159 223 L 223 (257)
Q Consensus 223 l 223 (257)
-
T Consensus 180 Q 180 (386)
T COG1104 180 Q 180 (386)
T ss_pred h
Confidence 3
No 210
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=34.23 E-value=3.4e+02 Score=24.13 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG 164 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 164 (257)
+.++++..+-..++||..+ +-+.+-|.....+.+|..| .+-+.+++|.++|
T Consensus 206 ~~q~~~t~~li~e~lg~~~-~~~~~~~QS~~G~~~WL~P------------~t~~~l~~L~~~g 256 (320)
T COG0276 206 PQQCQETTRLIAEALGLPE-EEYDLTFQSRFGPEPWLQP------------YTDDLLEELGEKG 256 (320)
T ss_pred HHHHHHHHHHHHHHcCCCc-hheeEEeecCCCCCCCCCC------------CHHHHHHHHHhcC
Confidence 5777777777788888532 3334444433333333322 2335555666665
No 211
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=34.14 E-value=2.8e+02 Score=23.19 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=36.8
Q ss_pred cCCeeEEEecCCCHHHHHHHHHhCCCCCcee--------------ccc---cCC--CCCcHHHHHHHHHCCceEEEec
Q 025159 163 LGYTKAIGVSNFSCKKLGDILATAKIPPAAN--------------QVE---MNP--LWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 163 ~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~--------------q~~---~~~--~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
.+....+=+++|++..+..+.+...--+... ++. +++ ......+++.++++|+.+.+|.
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYT 216 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEe
Confidence 3444567899999999888877543111100 011 111 1123689999999999999994
No 212
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.08 E-value=2.8e+02 Score=23.56 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHcC-CeeEEEecCCCH------HHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEE-Ee
Q 025159 149 DFKSVWEAMEECQNLG-YTKAIGVSNFSC------KKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLA-AY 220 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G-~ir~iGvs~~~~------~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~-~~ 220 (257)
..+.+++.++++++.. .+..+..+=+++ +.+-+.+..++++-.++ +.-+.....++++.|+++|+..+ ..
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii--pDlp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV--ADLPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE--CCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 4667888888888652 344344444444 55444445555442222 22233334678899999997744 55
Q ss_pred cCC
Q 025159 221 APL 223 (257)
Q Consensus 221 ~pl 223 (257)
+|-
T Consensus 148 ~P~ 150 (256)
T TIGR00262 148 APN 150 (256)
T ss_pred CCC
Confidence 543
No 213
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=34.06 E-value=3.8e+02 Score=24.69 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=51.4
Q ss_pred ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC--CeeEEEecC--CCHHHHHHHHHhCCCCCceecc
Q 025159 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG--YTKAIGVSN--FSCKKLGDILATAKIPPAANQV 195 (257)
Q Consensus 120 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~p~~~q~ 195 (257)
.++.++..|-. .+-|+.+.+|.+.- .+.-+|=-. .++..+.++++....+ ++|+
T Consensus 278 ~~i~~iEdPl~--------------------~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d--~v~i 335 (425)
T TIGR01060 278 YPIVSIEDGLS--------------------EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVAN--SILI 335 (425)
T ss_pred CCcEEEEcCCC--------------------cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCC--EEEe
Confidence 46788888843 23356666776654 555444332 2589999988876544 6666
Q ss_pred ccCCCCC---cHHHHHHHHHCCceEEE
Q 025159 196 EMNPLWQ---QNKLREFCKAKDIQLAA 219 (257)
Q Consensus 196 ~~~~~~~---~~~~~~~~~~~gi~v~~ 219 (257)
..+-... -.++.+.|+++|+.++.
T Consensus 336 k~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 336 KPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred cccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 6654432 36789999999998554
No 214
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=34.02 E-value=94 Score=23.14 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
.+.....+....+.|+|. .|. .+..++++....+.++.--+.+|..--.-+-..|++++|+++--.
T Consensus 12 ~~k~l~~l~~a~~~~ki~-~G~-----~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~ 77 (116)
T COG1358 12 EQKALSLLGKASRAGKLK-KGT-----NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVG 77 (116)
T ss_pred HHHHHHHHHHHHhcCCch-hhH-----HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 556778888888888875 454 777788888777766776665554444678899999999987543
No 215
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=33.92 E-value=3.1e+02 Score=25.01 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=54.3
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC-CCCceecccc
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK-IPPAANQVEM 197 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~p~~~q~~~ 197 (257)
.+|++.||.-... | .++..++.+...+.-.+ -+=+++.+++.++++++.+. -+|.+.-..-
T Consensus 69 ~~D~Ialr~~S~D-P----------------ae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL~aAt~ 130 (386)
T PF03599_consen 69 GADMIALRLESGD-P----------------AEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLLYAATE 130 (386)
T ss_dssp E-SEEEEE-GGGS-T----------------HHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EEEEEBT
T ss_pred cccEEEEEecCCC-h----------------HHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEEeEcCH
Confidence 6899999975321 0 36666666666664333 34455669999999999886 5555543322
Q ss_pred CCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 198 NPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 198 ~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
. .-+.+.+.|+++|.++++++|..-
T Consensus 131 e---Nyk~m~~lA~~y~~pl~v~sp~Dl 155 (386)
T PF03599_consen 131 E---NYKAMAALAKEYGHPLIVSSPIDL 155 (386)
T ss_dssp T---THHHHHHHHHHCT-EEEEE-SSCH
T ss_pred H---HHHHHHHHHHHcCCeEEEEecccH
Confidence 1 126799999999999999998853
No 216
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=33.91 E-value=3.4e+02 Score=24.05 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=74.7
Q ss_pred CChhHHHHHHHHHHHcCCceee----------CCCCCC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCCh
Q 025159 37 SGSETTKLAILEAMKLGYRHFD----------TATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHR 101 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~D----------tA~~Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~ 101 (257)
.++++..++.+.+.+.|+..+| +...|| ..+.+.+.++... ..-++-|+.|+.....+.
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr------~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMK------DAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHH------HHcCCceEEEEEeeeCCC
Confidence 5778888888999999998888 345566 3556666666551 112456777762111111
Q ss_pred hhH--HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC-CeeEEEecCC-CHH
Q 025159 102 ELV--VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG-YTKAIGVSNF-SCK 177 (257)
Q Consensus 102 ~~i--~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~ 177 (257)
+.. ...+-+.+...| +|.+.+|..+....+.. +........ .-|+...++++.- .|--||.... +++
T Consensus 148 ~t~~~~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~--~~~~~~~~~----~~~~~i~~v~~~~~~iPVI~nGgI~s~e 218 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAG---CDTFIVHARKAWLKGLS--PKENREIPP----LDYDRVYRLKRDFPHLTIEINGGIKTLE 218 (333)
T ss_pred cCHHHHHHHHHHHHHhC---CCEEEEcCCchhhcCCC--ccccccCCC----cCHHHHHHHHHhCCCCeEEEECCcCCHH
Confidence 111 223444556667 57788995432111100 000000011 2256666777763 6777777655 677
Q ss_pred HHHHHHHh
Q 025159 178 KLGDILAT 185 (257)
Q Consensus 178 ~l~~~~~~ 185 (257)
.+.++++.
T Consensus 219 da~~~l~~ 226 (333)
T PRK11815 219 EAKEHLQH 226 (333)
T ss_pred HHHHHHhc
Confidence 78888764
No 217
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=33.77 E-value=3.8e+02 Score=24.60 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC--cccEEEeecCCCCCCCCCCCCC
Q 025159 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLE--YIDLYVIHWPVSSKPGSYEFPI 140 (257)
Q Consensus 63 Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d--~lDl~~lh~p~~~~~~~~~~~~ 140 (257)
||.++.+.+++++.++... +-+-++|.|-+-+. -|=..++...+++.-. -++++.+|.|.....
T Consensus 78 ~Gg~~~L~~ai~ei~~~~~--~P~~I~V~tTC~~e-----~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~------- 143 (427)
T PRK02842 78 ADANEELDRVVEELIKRRP--NISVLFLVGSCPSE-----VIKLDLEGLAERLSTEFAGVPVLNYSGSGLETT------- 143 (427)
T ss_pred CCcHHHHHHHHHHHHhccC--CCCEEEEECCChHH-----hhcCCHHHHHHHhhcccCCCeEEEeeCCCcccc-------
Confidence 6788889999998655431 23456676665432 2222233333333322 267888888754210
Q ss_pred cccCCCCccHHHHHHHHHHHH-----HcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCC-------------
Q 025159 141 KKEDFLPMDFKSVWEAMEECQ-----NLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLW------------- 201 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~l~-----~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~------------- 201 (257)
.....+.+++++.+.. ..+.|--+|..+- +..++.++++..++++.. .++-+-..
T Consensus 144 -----~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~-~lp~~~~~d~~~~~~~~~~~~ 217 (427)
T PRK02842 144 -----FTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVG-FLPARRFTELPAIGPGTVVAL 217 (427)
T ss_pred -----HHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEE-EeCCccHHHHhhcCcCcEEEE
Confidence 0111333444443332 2467877886543 346788999988877421 12222110
Q ss_pred -C--cHHHHHHHHHCCceEEEec-CCCCCCCCCCCCCccChHHHHHHHHHhCCCcc
Q 025159 202 -Q--QNKLREFCKAKDIQLAAYA-PLGARGTIWGSNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 202 -~--~~~~~~~~~~~gi~v~~~~-pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
. ....-++.+++|++.+... |++- -....-++++|+-.|++..
T Consensus 218 ~~~~~~~~A~~L~~~GiP~~~~~~P~G~---------~~T~~~L~~la~~~g~~~~ 264 (427)
T PRK02842 218 AQPFLSDTARALRERGAKVLTAPFPLGP---------EGTRAWLEAAAAAFGIDPD 264 (427)
T ss_pred eCHHHHHHHHHHHHcCCccccCCCCcCh---------HHHHHHHHHHHHHhCcCHh
Confidence 0 0134455577787776542 3432 1245778888888887643
No 218
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.68 E-value=1.7e+02 Score=23.16 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=38.3
Q ss_pred hHHHHHHHHHH-HcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 025159 40 ETTKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (257)
Q Consensus 40 ~~~~~~l~~Al-~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL 112 (257)
+.....+...+ +.|++.....-.--++..+-+++++. - .+.+++|+|=.-... ..+...+++.+.+
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~---~---~~~dlVIttGG~G~t-~~D~t~ea~~~~~ 84 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRA---S---ERADLVITTGGLGPT-HDDLTREAVAKAF 84 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH---H---hCCCEEEECCCCCCC-CCChHHHHHHHHh
Confidence 44455555555 77988655333322667778888876 2 468888888432221 2245555555543
No 219
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=33.61 E-value=3.8e+02 Score=24.60 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-------ChHHHHHHHHHHHhCCCCCCCCcEEEEecc
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-------TEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~ 94 (257)
.+..++.+++..|+++|- ...|+ +.+.+.+-+.+-....+ ..+|+|+++-+
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl--~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKL--TADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCcc--CcCceEEeccc
Confidence 477889999999999983 23565 24444444332222233 67889988753
No 220
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=33.50 E-value=3.5e+02 Score=24.08 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCee-EEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecCC
Q 025159 153 VWEAMEECQNLGYTK-AIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl 223 (257)
-++.+.+|++...+. +.|=+-++...+.++++...++ ++|....-.. .-..+...|+++|+.++..+-.
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 367778888876664 6677788899999998876555 6666554432 2367899999999999865433
No 221
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=33.35 E-value=2.7e+02 Score=22.82 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHcCCc-----eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 39 SETTKLAILEAMKLGYR-----HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~-----~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
...+.-+..+|+-.|.+ |+=.+..||-+..+-.+ .. ++.-.+-.-+++++-...+.+.....+.++.+.+
T Consensus 42 TTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~-~~----~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~a~~ 116 (198)
T COG2109 42 TTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF-GL----GVEFHGMGEGFTWETQDREADIAAAKAGWEHAKE 116 (198)
T ss_pred hHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh-cc----ceeEEecCCceeCCCcCcHHHHHHHHHHHHHHHH
Confidence 34556666777777776 44555556544443332 00 0000112223333332222234677888999999
Q ss_pred hhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEE
Q 025159 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIG 170 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 170 (257)
.+.-...|+++|.-...... +...+.+++.+.|..-=..=.|-.-|
T Consensus 117 ~l~~~~ydlviLDEl~~al~-----------~g~l~~eeV~~~l~~kP~~~~vIiTG 162 (198)
T COG2109 117 ALADGKYDLVILDELNYALR-----------YGLLPLEEVVALLKARPEHTHVIITG 162 (198)
T ss_pred HHhCCCCCEEEEehhhHHHH-----------cCCCCHHHHHHHHhcCCCCcEEEEEC
Confidence 99988889999987643221 22344666666655322333343344
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.07 E-value=1.7e+02 Score=22.70 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=40.4
Q ss_pred EEEecCCC--HHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHH
Q 025159 168 AIGVSNFS--CKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIA 245 (257)
Q Consensus 168 ~iGvs~~~--~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia 245 (257)
.+|...|+ ...+..++..+++. +.- .-......+.++.+-+.++.++.-|.+.+ +-+ ...+.+.+.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~Gfe--Vi~--~g~~~tp~e~v~aA~~~dv~vIgvSsl~g-~h~------~l~~~lve~l 87 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFE--VIN--LGLFQTPEEAVRAAVEEDVDVIGVSSLDG-GHL------TLVPGLVEAL 87 (143)
T ss_pred ccCccccccchHHHHHHHHhCCce--EEe--cCCcCCHHHHHHHHHhcCCCEEEEEeccc-hHH------HHHHHHHHHH
Confidence 34666665 44466666666644 221 11122345666777777777777777765 322 2335555555
Q ss_pred HHhCCCcc
Q 025159 246 EAKGKTVA 253 (257)
Q Consensus 246 ~~~~~s~~ 253 (257)
+++|....
T Consensus 88 re~G~~~i 95 (143)
T COG2185 88 REAGVEDI 95 (143)
T ss_pred HHhCCcce
Confidence 66655443
No 223
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.04 E-value=1e+02 Score=22.46 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEecc-CCC-----------------
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKL-WCS----------------- 97 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~-~~~----------------- 97 (257)
|.........-.++.|.=|+-|-..|. .|.++---|-+ ..+.+++++|+ |..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld--------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d 89 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD--------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTD 89 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC--------chhhccccceEEEEccCCCCCCCCceeeeccC
Confidence 455556666777899999999999994 56555433332 34689999998 421
Q ss_pred CCChhhHHHHHHHHHHh
Q 025159 98 DAHRELVVPALQKSLEN 114 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~ 114 (257)
+-.-..++.++|.-|..
T Consensus 90 ~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 90 GENGLKVRNQIETLLGG 106 (117)
T ss_pred CCchhhHHHHHHHHHHh
Confidence 11224788888887764
No 224
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.82 E-value=3.5e+02 Score=23.91 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCc
Q 025159 40 ETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEY 119 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~ 119 (257)
++..+.+..+.+.|++.|=.--.-......=+++++. . . ++-|..-.. ..++.+.. . .+++|. .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv~~~~d~~~l~~vr~~----~--g--~~~l~lDaN-~~~~~~~a----~-~~~~l~--~ 202 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKIKPGWDVEPLKAVRER----F--P--DIPLMADAN-SAYTLADI----P-LLKRLD--E 202 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEecChHHHHHHHHHHHHH----C--C--CCeEEEECC-CCCCHHHH----H-HHHHhh--c
Confidence 6778888888999999773211001111112233433 1 2 344444332 23344432 1 244443 3
Q ss_pred ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCCCCceeccccC
Q 025159 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKIPPAANQVEMN 198 (257)
Q Consensus 120 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~ 198 (257)
.++.++..|.. .+-+..+.++++.-.+ -+.|=|-++.+.+..+++...++ ++|....
T Consensus 203 ~~i~~iEeP~~--------------------~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~~~ik~~ 260 (354)
T cd03317 203 YGLLMIEQPLA--------------------ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACK--IINIKPG 260 (354)
T ss_pred CCccEEECCCC--------------------hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCC--EEEeccc
Confidence 47777887742 2336677777765443 36788889999999998876555 7777655
Q ss_pred CCCC---cHHHHHHHHHCCceEEEecCC
Q 025159 199 PLWQ---QNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 199 ~~~~---~~~~~~~~~~~gi~v~~~~pl 223 (257)
.+.- -..+.+.|+.+|+.++..+..
T Consensus 261 ~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 261 RVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred ccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 4332 367899999999999876544
No 225
>PRK07714 hypothetical protein; Provisional
Probab=32.78 E-value=1.8e+02 Score=20.67 Aligned_cols=64 Identities=6% Similarity=0.000 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
.+.++..|--.++.|++. +|. ++..+.++.......++-.+.+.- ....+...|+.++|+++.+
T Consensus 3 ~~~~~~~Lgla~raGk~v-~G~-----~~v~~al~~g~~~lViiA~D~s~~-~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 3 MSDWKSFLGLANRARKVI-SGE-----ELVLKEVRSGKAKLVLLSEDASVN-TTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHHHHHHhCCee-ecH-----HHHHHHHHhCCceEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEe
Confidence 356778888888999874 555 667777777776655655444432 2367888999999999754
No 226
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.59 E-value=2.4e+02 Score=21.89 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHH-HcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 39 SETTKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 39 ~~~~~~~l~~Al-~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
.+.-.+.+.+|| +.|+..+.+.-.-..++++..++.+ .-+++..+-+. .....+-..+-+.|+..|.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~---------dv~vIgvSsl~---g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE---------DVDVIGVSSLD---GGHLTLVPGLVEALREAGV 92 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc---------CCCEEEEEecc---chHHHHHHHHHHHHHHhCC
Confidence 445688899998 7788887766655567777777662 34555444432 2347888899999999999
Q ss_pred CcccEE-EeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHH
Q 025159 118 EYIDLY-VIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (257)
Q Consensus 118 d~lDl~-~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 184 (257)
+ |++ ++-...+ .++ .++|++.|--+.++-.+--.+.+..+++
T Consensus 93 ~--~i~v~~GGvip-------------------~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 93 E--DILVVVGGVIP-------------------PGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred c--ceEEeecCccC-------------------chh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 8 444 4343311 111 5678888888888875554444555544
No 227
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=32.59 E-value=4.2e+02 Score=24.77 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=86.6
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~ 141 (257)
.||.+..+-++|.+..+.. +.+-++|.+-+-+.-. -+.+..-+++.-++++ +.++.++.+.....
T Consensus 100 VfGg~~kL~~~I~ei~~~~---~P~~I~V~tTC~~~lI-GdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~-------- 164 (475)
T PRK14478 100 VFGGEKKLFKAIDEIIEKY---APPAVFVYQTCVVALI-GDDIDAVCKRAAEKFG---IPVIPVNSPGFVGN-------- 164 (475)
T ss_pred eeCCHHHHHHHHHHHHHhc---CCCEEEEeCCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEECCCcccc--------
Confidence 4788888999998886553 3355677776643211 1233333333333444 67888887754211
Q ss_pred ccCCCCccHHHHHHHHHH-HH--------HcCCeeEEEecCC--CHHHHHHHHHhCCCCCceeccccC------------
Q 025159 142 KEDFLPMDFKSVWEAMEE-CQ--------NLGYTKAIGVSNF--SCKKLGDILATAKIPPAANQVEMN------------ 198 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~-l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q~~~~------------ 198 (257)
.......++++|-+ +. +.+.|--||-.++ +.+++.++++..++++...-....
T Consensus 165 ----~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 240 (475)
T PRK14478 165 ----KNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHRAR 240 (475)
T ss_pred ----hhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCc
Confidence 01223444444443 32 2466888886664 456788999988876432111111
Q ss_pred --CC-CCc--HHHHHHHH-HCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHh
Q 025159 199 --PL-WQQ--NKLREFCK-AKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAK 248 (257)
Q Consensus 199 --~~-~~~--~~~~~~~~-~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~ 248 (257)
+. +.. ...-++.+ +.||+.+.-+|++- -....-++++++-.
T Consensus 241 lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~---------~~T~~~l~~la~~~ 287 (475)
T PRK14478 241 ANMMVCSGAMINLARKMEERYGIPFFEGSFYGI---------EDTSDSLRQIARLL 287 (475)
T ss_pred EEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcH---------HHHHHHHHHHHHHH
Confidence 10 011 12334444 44999887555432 12457778888877
No 228
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=32.56 E-value=1.6e+02 Score=21.50 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
.++...|--.++.|++- +|. .+..+.+.......+++--+.+. +....+..+|+.++|+++.|
T Consensus 11 ~~i~~~Lgla~raGKlv-~G~-----~~vlkalk~gkaklViiA~D~~~-~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 11 ESINSKLQLVMKSGKYT-LGT-----KSTLKALRNGKAKLVIISNNCPP-IRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred hhHHHHHHHHHHhCCee-ecH-----HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHhhcCCCEEEe
Confidence 45667777888899983 564 56666667666665565444332 22367899999999999876
No 229
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=32.46 E-value=4.4e+02 Score=25.01 Aligned_cols=117 Identities=8% Similarity=0.077 Sum_probs=66.6
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC-CcccEEEeecCCCCCCCCCCC
Q 025159 60 ATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQL-EYIDLYVIHWPVSSKPGSYEF 138 (257)
Q Consensus 60 A~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~-d~lDl~~lh~p~~~~~~~~~~ 138 (257)
+..||.+..+-++|++..+.. +-+=++|.|-+-+.-. .+.+..-+++.-++..+ +-+++..+|.|.....
T Consensus 121 ~aVfGG~~~L~e~I~~~~~~y---~P~~I~V~tTC~~evI-GDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs----- 191 (515)
T TIGR01286 121 AAVFGGLKNMVDGLQNCYALY---KPKMIAVSTTCMAEVI-GDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGS----- 191 (515)
T ss_pred ceeeCcHHHHHHHHHHHHHhc---CCCEEEEeCCcHHHHh-hccHHHHHHHHHHhcCCCCCCceEEeeCCCCccc-----
Confidence 345788888889998876554 3355677777643211 23444445554444433 2468999999865321
Q ss_pred CCcccCCCCccHHHHHHHHHH-HH----------HcCCeeEEE-ecC--CCHHHHHHHHHhCCCCCce
Q 025159 139 PIKKEDFLPMDFKSVWEAMEE-CQ----------NLGYTKAIG-VSN--FSCKKLGDILATAKIPPAA 192 (257)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~-l~----------~~G~ir~iG-vs~--~~~~~l~~~~~~~~~~p~~ 192 (257)
.....+.+++++-+ +. ..++|--|| ... -+..++.++++..++++.+
T Consensus 192 -------~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 192 -------HITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred -------HHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEE
Confidence 01112233333332 21 236687774 433 3467889999988877543
No 230
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=32.40 E-value=3.7e+02 Score=24.09 Aligned_cols=93 Identities=9% Similarity=0.175 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC-eeEEEecCCCHHHHHHH
Q 025159 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 104 i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~ 182 (257)
-+..+-+.|.++|+++|++- .|.. . +.-|+.+..+.+.+. .+..+.+..+.+.++.+
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~------------------~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 81 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAM------------------G-EEERAVIRAIVALGLPARLMAWCRARDADIEAA 81 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC------------------C-HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHH
Confidence 44556667999998887774 3421 1 233566667766543 67777777788888887
Q ss_pred HHhCCCCCceeccccCCCC--------Cc------HHHHHHHHHCCceEEE
Q 025159 183 LATAKIPPAANQVEMNPLW--------QQ------NKLREFCKAKDIQLAA 219 (257)
Q Consensus 183 ~~~~~~~p~~~q~~~~~~~--------~~------~~~~~~~~~~gi~v~~ 219 (257)
.+. +++..-+-++.|..+ ++ .+.+++++++|..+..
T Consensus 82 ~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 82 ARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 664 333111111222111 11 3678999999987653
No 231
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=32.40 E-value=1.7e+02 Score=24.25 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..++++.+.+.+. .+ .||..+- ++++++++.+... + +-.+| +-+.++++.|.++||+++.
T Consensus 51 a~e~I~~l~~~~p--~~-lIGAGTVL~~~q~~~a~~aGa-~-----fiVsP-~~~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 51 ALEAIRALAKEFP--EA-LIGAGTVLNPEQARQAIAAGA-Q-----FIVSP-GLNPEVAKAANRYGIPYIP 111 (211)
T ss_pred HHHHHHHHHHhCc--cc-EEccccccCHHHHHHHHHcCC-C-----EEECC-CCCHHHHHHHHhCCCcccC
Confidence 4567777777666 22 3787765 8999999977654 1 12222 2235899999999988773
No 232
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=32.27 E-value=4.1e+02 Score=24.58 Aligned_cols=160 Identities=15% Similarity=0.055 Sum_probs=86.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCc
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIK 141 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~ 141 (257)
.||.+..+-++|++..+.. +.+-++|.|-+-+.-. .+.+..-+++.-++.+ +.++.++.|.....
T Consensus 102 VfGg~~kL~~~I~e~~~~~---~P~~I~V~ttC~~~lI-GdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~-------- 166 (456)
T TIGR01283 102 IFGGEKKLFHAIREIVERY---HPPAVFVYSTCVPGLI-GDDLEAVCKAAAEKTG---IPVIPVDSEGFYGS-------- 166 (456)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCCEEEEECCChHHHh-cCCHHHHHHHHHHHhC---CCEEEEECCCCccc--------
Confidence 4788999999999887664 3456777777643211 1233333333333344 57888888754211
Q ss_pred ccCCCCccHHHHHHHHHHHHH-------------cCCeeEEEecCC--CHHHHHHHHHhCCCCCceeccccC--------
Q 025159 142 KEDFLPMDFKSVWEAMEECQN-------------LGYTKAIGVSNF--SCKKLGDILATAKIPPAANQVEMN-------- 198 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~l~~-------------~G~ir~iGvs~~--~~~~l~~~~~~~~~~p~~~q~~~~-------- 198 (257)
.....+.++++|-+... .+.|--||-.+. +.+++.++++..++.+...-....
T Consensus 167 ----~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 242 (456)
T TIGR01283 167 ----KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTA 242 (456)
T ss_pred ----hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhc
Confidence 01123344555543221 356888885443 456899999988766432111111
Q ss_pred ------CC-CCc--HHHHHHH-HHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhC
Q 025159 199 ------PL-WQQ--NKLREFC-KAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKG 249 (257)
Q Consensus 199 ------~~-~~~--~~~~~~~-~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~ 249 (257)
+. +.. ..+-++. +++||+.+..+|++- -....-+++||+.+|
T Consensus 243 ~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~---------~~T~~~L~~Ia~~lg 294 (456)
T TIGR01283 243 HRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGI---------EDTSKALRDIADLFG 294 (456)
T ss_pred ccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcH---------HHHHHHHHHHHHHhC
Confidence 10 111 1334444 466999998666532 113455566666555
No 233
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.23 E-value=3.7e+02 Score=24.01 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCC-C--h--HHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQ-T--E--QPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSL 112 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~--e--~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL 112 (257)
+.++..+.++.+.+.|++.|=.- .++ . + ...=+++|+.+ | +++.|..-.. ..++.+... +.+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~--G-----~~~~l~vDan-~~~~~~~A~----~~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAV--G-----PDMRLMHDGA-HWYSRADAL----RLG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHh--C-----CCCeEEEECC-CCcCHHHHH----HHH
Confidence 66777888888999999988542 121 1 1 11122334331 2 2334443332 223333222 222
Q ss_pred HhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCee-EEEecCCC-HHHHHHHHHhCCCCC
Q 025159 113 ENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTK-AIGVSNFS-CKKLGDILATAKIPP 190 (257)
Q Consensus 113 ~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~p 190 (257)
++|. .+++.++..|.. . +-++.+.+|+++-.+. ..|=+-++ +.++.++++...++
T Consensus 210 ~~l~--~~~l~~iEeP~~-------------------~-~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d- 266 (368)
T cd03329 210 RALE--ELGFFWYEDPLR-------------------E-ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATD- 266 (368)
T ss_pred HHhh--hcCCCeEeCCCC-------------------c-hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCC-
Confidence 2332 235566666632 1 2347777888875553 33445567 88899998876554
Q ss_pred ceeccccCCCC---CcHHHHHHHHHCCceEEEec
Q 025159 191 AANQVEMNPLW---QQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 191 ~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~ 221 (257)
++|...+... .-..+.+.|+++|+.++.++
T Consensus 267 -~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 267 -FLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred -EEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 7777766432 23689999999999998764
No 234
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=32.09 E-value=3.2e+02 Score=23.31 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHcCCceeeCCCCCCC---hHH--HHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHh
Q 025159 40 ETTKLAILEAMKLGYRHFDTATLYQT---EQP--LGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLEN 114 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~~~DtA~~Yg~---e~~--lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~ 114 (257)
+...+.++.--+.|..++..+..-+. ... +...|++. .++ +-=..++.. +.++..+...+... ..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--~g~---~~i~Hlt~r----~~n~~~l~~~L~~~-~~ 84 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--TGI---PTVPHLTCI----GATREEIREILREY-RE 84 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--cCC---CeeEEeeec----CCCHHHHHHHHHHH-HH
Confidence 44455555555778999998887551 222 23333321 032 112223333 44566777777754 77
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CCeeEEEecCCC--------H-HHHHHHHH
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGVSNFS--------C-KKLGDILA 184 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~--------~-~~l~~~~~ 184 (257)
+|++ +++.|-. +....+. |..... +..+.+-++.+++. |. -+||+..|. . +.++.+.+
T Consensus 85 ~Gi~--nvL~l~G-D~~~~~~---~~~~~~-----f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~ 152 (272)
T TIGR00676 85 LGIR--HILALRG-DPPKGEG---TPTPGG-----FNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKR 152 (272)
T ss_pred CCCC--EEEEeCC-CCCCCCC---CCCCCC-----CCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 8854 3444543 2211111 000000 11223333333433 33 478877652 1 23444433
Q ss_pred h--CCCCCceeccccCCCCCcHHHHHHHHHCCceE
Q 025159 185 T--AKIPPAANQVEMNPLWQQNKLREFCKAKDIQL 217 (257)
Q Consensus 185 ~--~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v 217 (257)
. ++.+..+-|.-|+. ..-.++++.|++.||.+
T Consensus 153 K~~aGA~f~iTQ~~fd~-~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 153 KVDAGADYAITQLFFDN-DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred HHHcCCCeEeeccccCH-HHHHHHHHHHHHcCCCC
Confidence 2 34556677776654 11256888999997664
No 235
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=32.05 E-value=60 Score=25.52 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=36.2
Q ss_pred CC-ChHHHHHHHHHHHhCCCCCCCC---cEEEEeccCCC----------CCChhhHHHHHHHHHHh
Q 025159 63 YQ-TEQPLGDAIAEALSTGIIKSRD---ELFIASKLWCS----------DAHRELVVPALQKSLEN 114 (257)
Q Consensus 63 Yg-~e~~lg~~l~~~~~~~~~~~R~---~l~i~tK~~~~----------~~~~~~i~~~l~~sL~~ 114 (257)
+| .+..+++++.+++++|++ +++ +++|..-+|-. ++.++..+.++++.++.
T Consensus 78 fGpaQ~avA~AVaD~V~eG~i-P~~~addl~Iiv~Vfi~p~a~D~~kiy~~NY~ATKlAI~rAm~~ 142 (160)
T TIGR03126 78 FGPAQAAVAKAVADSVEEGII-PKDEADDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRAMEG 142 (160)
T ss_pred cCHHHHHHHHHHHHHHHcCCC-ChhhhCcEEEEEEEEeccccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 44 588889999999999876 665 68888888643 13456666777776664
No 236
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.99 E-value=3.8e+02 Score=24.02 Aligned_cols=99 Identities=8% Similarity=0.112 Sum_probs=58.3
Q ss_pred EEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CC---eeEEEec--CCCHHHHHHHHHhCC-CCCceec
Q 025159 122 LYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GY---TKAIGVS--NFSCKKLGDILATAK-IPPAANQ 194 (257)
Q Consensus 122 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~p~~~q 194 (257)
.+-||.|+...+.... |.. ...+++++++++.++.++ |+ ++++=+. |-+.+.++++.+... ....++-
T Consensus 215 aiSLhA~~~e~R~~l~-Pi~----~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnL 289 (342)
T PRK14465 215 AISLNHPDPNGRLQIM-DIE----EKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINV 289 (342)
T ss_pred EEEecCCChhhcceEe-ecc----ccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEE
Confidence 3778988775543222 110 012467888888877643 32 3354343 445566555555433 3345777
Q ss_pred cccCCCCC----c-----HHHHHHHHHCCceEEEecCCCC
Q 025159 195 VEMNPLWQ----Q-----NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 195 ~~~~~~~~----~-----~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++||+... . ....+..+++||.+......|.
T Consensus 290 IPyN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 290 IPLNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 88886431 1 3456777888999998877754
No 237
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=31.98 E-value=3.8e+02 Score=24.04 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
.+..+++.++++.-.|=-|+=-.|+.......++..--+..+|.-++.--..-..+++.|+++|+++=.
T Consensus 58 ~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 58 RESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred HHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 577888889998777777776677765555555554344345533332211126899999999998843
No 238
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.96 E-value=3.6e+02 Score=23.74 Aligned_cols=98 Identities=7% Similarity=-0.085 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecC---------CCHHHHHHHHHhCCCCCceeccccCCC---CC-cHHHHHHHHHCCce
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSN---------FSCKKLGDILATAKIPPAANQVEMNPL---WQ-QNKLREFCKAKDIQ 216 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~p~~~q~~~~~~---~~-~~~~~~~~~~~gi~ 216 (257)
...+.+-++.+++.|.++.|.+.+ .+.+.++.+.+ .+.. ..+-+..+.. .. ....++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~-~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT-SGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH-cCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 356777777888888876555543 34444555444 3322 2222333211 11 14678889999999
Q ss_pred EEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcc
Q 025159 217 LAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 217 v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
+..-++|.. |... +......+.+.+.+.|+.+.
T Consensus 230 v~~q~vLl~-gvNd---~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 230 MVSQSVLLR-GVND---DPETLAALMRAFVECRIKPY 262 (321)
T ss_pred EEEEeeEeC-CCCC---CHHHHHHHHHHHHhcCCeeE
Confidence 999888876 6431 11122444555556676553
No 239
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.95 E-value=3.2e+02 Score=24.52 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHHc-CC---eeEEEe--cCCCHHHHHHHHHhCC-CCCceeccccCCCCC-----c-----HHHHHHHH
Q 025159 149 DFKSVWEAMEECQNL-GY---TKAIGV--SNFSCKKLGDILATAK-IPPAANQVEMNPLWQ-----Q-----NKLREFCK 211 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~-G~---ir~iGv--s~~~~~~l~~~~~~~~-~~p~~~q~~~~~~~~-----~-----~~~~~~~~ 211 (257)
+++++.+++.++.+. |. +.++=+ -|-+++.+.++.+... .+..+|-++||+... . ....+..+
T Consensus 224 ~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~ 303 (344)
T PRK14464 224 APEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLH 303 (344)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHH
Confidence 467777777776543 42 123322 2667888877777553 556688888887542 1 35677788
Q ss_pred HCCceEEEecCCCC
Q 025159 212 AKDIQLAAYAPLGA 225 (257)
Q Consensus 212 ~~gi~v~~~~pl~~ 225 (257)
++||.+......|.
T Consensus 304 ~~gi~~tiR~~~G~ 317 (344)
T PRK14464 304 RRGVLTKVRNSAGQ 317 (344)
T ss_pred HCCceEEEECCCCC
Confidence 99999999888764
No 240
>PRK06740 histidinol-phosphatase; Validated
Probab=31.65 E-value=3.7e+02 Score=23.83 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=71.0
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCC----ccHHHHHHHHHHHHHcCCeeEEEec------CCC
Q 025159 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLP----MDFKSVWEAMEECQNLGYTKAIGVS------NFS 175 (257)
Q Consensus 106 ~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs------~~~ 175 (257)
..++..|+....||+ +.-+|....+.- ..+...+.+.. .-.+.-++.+.++.+.|.+..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~---~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~ 231 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGF---DNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYR 231 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCC---CCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCC
Confidence 445666777777877 778897642210 00000011111 1134466788888899998777622 121
Q ss_pred H------HHHHHHHHh---CCCCCceecc-ccC----CCCCcHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccC-hHH
Q 025159 176 C------KKLGDILAT---AKIPPAANQV-EMN----PLWQQNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVME-CEV 240 (257)
Q Consensus 176 ~------~~l~~~~~~---~~~~p~~~q~-~~~----~~~~~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~-~~~ 240 (257)
+ ..++++++. .++...+|-. .+. -..+...+++.|++.|+.++.-| =+. .+..+-. .+.
T Consensus 232 ~~~~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgS-DAH-----~p~~VG~~~~~ 305 (331)
T PRK06740 232 LDENEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSS-DAH-----YPNDLGKYVEE 305 (331)
T ss_pred cchhhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEee-CCC-----CHHHHHhHHHH
Confidence 1 234444333 3344444432 111 11234678999999999875433 111 0111111 256
Q ss_pred HHHHHHHhCCCcc
Q 025159 241 LKEIAEAKGKTVA 253 (257)
Q Consensus 241 ~~~ia~~~~~s~~ 253 (257)
..+++++.|.+..
T Consensus 306 a~~~l~~~G~~~i 318 (331)
T PRK06740 306 NVKTLRNHGVTSL 318 (331)
T ss_pred HHHHHHHcCCcEE
Confidence 6788888887643
No 241
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.58 E-value=3.7e+02 Score=23.87 Aligned_cols=148 Identities=10% Similarity=0.056 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCCceeeCCCCCCCh--HHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 38 GSETTKLAILEAMKLGYRHFDTATLYQTE--QPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 38 ~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e--~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
+.++..+.+..+.+.|++.|=.--.-..+ ...=+++|+.+ -+++-|..-.+ ..++++...+ +-+.|+.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~d~~~v~~vRe~~-------G~~~~l~vDaN-~~~~~~~A~~-~~~~l~~- 207 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGRDPRRDPDRVAAARRAI-------GPDAELFVDAN-GAYSRKQALA-LARAFAD- 207 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCHHHHHHHHHHHHHHc-------CCCCeEEEECC-CCCCHHHHHH-HHHHHHH-
Confidence 55667777777888999977432111111 12223444431 23444443332 2234333222 2223333
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc--CCe-eEEEecCCCHHHHHHHHHhCCCCCce
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYT-KAIGVSNFSCKKLGDILATAKIPPAA 192 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~ 192 (257)
+++.++..|.. .+-++.+.+|++. -.| -..|=|-++...+.++++...++ +
T Consensus 208 ----~~~~~~EeP~~--------------------~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~d--i 261 (352)
T cd03328 208 ----EGVTWFEEPVS--------------------SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVD--V 261 (352)
T ss_pred ----hCcchhhCCCC--------------------hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCC--E
Confidence 45666676632 2346777788876 333 35677888999999999876655 7
Q ss_pred eccccCCCC---CcHHHHHHHHHCCceEEEec
Q 025159 193 NQVEMNPLW---QQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 193 ~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~ 221 (257)
+|....-+. .-..+.+.|+.+|+.++.+.
T Consensus 262 v~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 262 LQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred EecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 877766432 23689999999999999874
No 242
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=31.58 E-value=2.2e+02 Score=21.14 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=46.0
Q ss_pred CCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC------cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHH
Q 025159 85 RDELFIASKLWCSDAHRELVVPALQKSLENLQLE------YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAME 158 (257)
Q Consensus 85 R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d------~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (257)
|=.+.|+-|+......++.+++.+.++.+....+ -.|++++-.+.... .+..++-+.|+
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~---------------~~~~~l~~~l~ 111 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEE---------------INFSHLNYELS 111 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCccc---------------CCHHHHHHHHH
Confidence 7788899997766777899999999999987642 47899999875432 23566666666
Q ss_pred HHH
Q 025159 159 ECQ 161 (257)
Q Consensus 159 ~l~ 161 (257)
.|.
T Consensus 112 ~l~ 114 (118)
T PRK01492 112 KII 114 (118)
T ss_pred HHH
Confidence 553
No 243
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=31.44 E-value=2.5e+02 Score=21.77 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=46.1
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC--CCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQ--LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg--~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.|=.+.|+-|++.....++.+++.++++++.+. +...|++++-.+... ..+..++.+.|..|.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~---------------~~~~~~l~~~l~~LL 112 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA---------------KASNPQLRDAFLRLL 112 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc---------------cCCHHHHHHHHHHHH
Confidence 577778888876667778999999999988653 233488888776432 234667777777766
Q ss_pred Hc
Q 025159 162 NL 163 (257)
Q Consensus 162 ~~ 163 (257)
+.
T Consensus 113 ~k 114 (145)
T PRK04820 113 RR 114 (145)
T ss_pred HH
Confidence 54
No 244
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=31.43 E-value=2.6e+02 Score=23.45 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhCCCCC-ceecc-ccCCCCCc-----HHHHHHHHHCCceEEEecCCCCCCCCCCCCC-----ccChHHH
Q 025159 174 FSCKKLGDILATAKIPP-AANQV-EMNPLWQQ-----NKLREFCKAKDIQLAAYAPLGARGTIWGSNR-----VMECEVL 241 (257)
Q Consensus 174 ~~~~~l~~~~~~~~~~p-~~~q~-~~~~~~~~-----~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~-----~~~~~~~ 241 (257)
.++.+++.+.+.+++.+ ++|.+ +||-+..+ ..+.++++..|-.-+..-||.. |--.+... +..-..+
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd-~s~~~~~vr~~~lv~AlkaL 127 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND-GSWPGTAVRREDLVEALKAL 127 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC-CCCCCcccchHHHHHHHHHh
Confidence 34566666666666543 22222 55554432 5788899998888888889875 43211111 1122556
Q ss_pred HHHHHHhCCC
Q 025159 242 KEIAEAKGKT 251 (257)
Q Consensus 242 ~~ia~~~~~s 251 (257)
+.|-.+||++
T Consensus 128 kpil~~~gi~ 137 (272)
T COG4130 128 KPILDEYGIT 137 (272)
T ss_pred hHHHHHhCcc
Confidence 6666777654
No 245
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.40 E-value=2.3e+02 Score=22.12 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCC---C--hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC-CChhhHHHHHHHHH
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQ---T--EQPLGDAIAEALSTGIIKSRDELFIASKLWCSD-AHRELVVPALQKSL 112 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg---~--e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~-~~~~~i~~~l~~sL 112 (257)
.+++.+..+.|.+.|...+...+.|+ + ++.+-+.+++..+. -+.++.+..+..+.. .+++.+.+..+..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~~- 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARIA- 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHHH-
Confidence 68899999999999999999765543 3 45566655555222 012344444443332 2555555554333
Q ss_pred HhhCCCccc
Q 025159 113 ENLQLEYID 121 (257)
Q Consensus 113 ~~Lg~d~lD 121 (257)
+..|++.+.
T Consensus 139 ~~~g~~~iK 147 (201)
T cd00945 139 AEAGADFIK 147 (201)
T ss_pred HHhCCCEEE
Confidence 567765543
No 246
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=31.36 E-value=3.4e+02 Score=23.40 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCe-eEEEecCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYT-KAIGVSNF 174 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvs~~ 174 (257)
..+.+.+++.++..++ -| +|-+++-.-.-+.. .++.+|-.+.++..++ .|++ -.+|++.
T Consensus 22 ~iD~~~l~~li~~l~~-~G---v~gi~v~GstGE~~-------------~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~- 83 (296)
T TIGR03249 22 SFDEAAYRENIEWLLG-YG---LEALFAAGGTGEFF-------------SLTPAEYEQVVEIAVSTAKGKVPVYTGVGG- 83 (296)
T ss_pred CcCHHHHHHHHHHHHh-cC---CCEEEECCCCcCcc-------------cCCHHHHHHHHHHHHHHhCCCCcEEEecCc-
Confidence 4567888888888776 55 56666554322211 2344554444444444 3543 3467764
Q ss_pred CHHHHHHHH---HhCCCCCceeccccCCCCCcHHHHHH----HHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHH
Q 025159 175 SCKKLGDIL---ATAKIPPAANQVEMNPLWQQNKLREF----CKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEA 247 (257)
Q Consensus 175 ~~~~l~~~~---~~~~~~p~~~q~~~~~~~~~~~~~~~----~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~ 247 (257)
+.....++. +..+.+-.++.-+|..-..+++++++ |...+++++.|+ . . |. .+..+.+.+++++
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn-~-~-g~------~l~~~~~~~La~~ 154 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ-R-D-NA------VLNADTLERLADR 154 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe-C-C-CC------CCCHHHHHHHHhh
Confidence 444433332 33345544444454332234455444 455689999998 2 2 32 2345666777654
Q ss_pred h
Q 025159 248 K 248 (257)
Q Consensus 248 ~ 248 (257)
+
T Consensus 155 ~ 155 (296)
T TIGR03249 155 C 155 (296)
T ss_pred C
Confidence 4
No 247
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.35 E-value=2.4e+02 Score=28.46 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc--CCeeEEEecCCCHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYTKAIGVSNFSCKK 178 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~ 178 (257)
.+.+++-++...........-+|+|+..+.. ..+.+++|-+..++ ..+++|-++|.....
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------------T~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhC------------------CHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 3556666655443322234567888776432 23556777666665 589999999986544
Q ss_pred HHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCce
Q 025159 179 LGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQ 216 (257)
Q Consensus 179 l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~ 216 (257)
+.-++.. +.+++|..+..+ ..+...|++.||.
T Consensus 163 p~TIrSR------Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 163 PVTVLSR------CLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cchhhhh------eEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4444443 344555555442 2344556666654
No 248
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.13 E-value=2.3e+02 Score=24.40 Aligned_cols=40 Identities=5% Similarity=-0.111 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEA 76 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~ 76 (257)
.+++...++++.+.+.|+..|-.++..| .-..+.+.++..
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 5667777777777777777665555544 344455555544
No 249
>PLN02321 2-isopropylmalate synthase
Probab=31.12 E-value=5.2e+02 Score=25.36 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=53.8
Q ss_pred ccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhh
Q 025159 26 VLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHREL 103 (257)
Q Consensus 26 ~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~ 103 (257)
.+.|++.-.++.+++.+.++++.+.+.|...|-.++..| .-..+++.++.+.+.-. .++++.|...++....
T Consensus 226 ~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~--~~~~v~i~vH~HND~G---- 299 (632)
T PLN02321 226 DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTP--GIENVIISTHCQNDLG---- 299 (632)
T ss_pred eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcC--CCCCceEEEEeCCCCC----
Confidence 466666655567888888888888888888776666655 44455666655432210 2345667666554221
Q ss_pred HHHHHHHHHH--hhCCCcccEEEee
Q 025159 104 VVPALQKSLE--NLQLEYIDLYVIH 126 (257)
Q Consensus 104 i~~~l~~sL~--~Lg~d~lDl~~lh 126 (257)
.++-++|. .-|.+++|.=+.-
T Consensus 300 --lAvANslaAv~AGA~~Vd~TinG 322 (632)
T PLN02321 300 --LSTANTLAGAHAGARQVEVTING 322 (632)
T ss_pred --HHHHHHHHHHHhCCCEEEEeccc
Confidence 12222222 2467777665543
No 250
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=31.10 E-value=38 Score=25.88 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCceeeCCC
Q 025159 42 TKLAILEAMKLGYRHFDTAT 61 (257)
Q Consensus 42 ~~~~l~~Al~~Gi~~~DtA~ 61 (257)
-...+...|+.|+|+||.--
T Consensus 28 Q~~~i~~QL~~GiR~lDlrv 47 (146)
T PF00388_consen 28 QSWSIREQLESGIRYLDLRV 47 (146)
T ss_dssp -SHHHHHHHHTT--EEEEEE
T ss_pred chHhHHHHHhccCceEEEEE
Confidence 35789999999999998543
No 251
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.99 E-value=1e+02 Score=22.75 Aligned_cols=40 Identities=8% Similarity=-0.115 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEA 76 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg~~l~~~ 76 (257)
-+.+.=..++...++.|.+.-+.|..|| +...+..|.+++
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3556667888999999999999999999 999999999988
No 252
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=30.72 E-value=35 Score=30.27 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHH-----HHHHHHhCCCCC--------------ceeccccCCCCCcHHHHHHH
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKK-----LGDILATAKIPP--------------AANQVEMNPLWQQNKLREFC 210 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-----l~~~~~~~~~~p--------------~~~q~~~~~~~~~~~~~~~~ 210 (257)
...++..++++.+.+.++-|.+-.|+|.| +++..++..-+- ...|-.|+.-+ ...+.+.|
T Consensus 141 ~~~~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~~~-r~~i~~~c 219 (377)
T COG3454 141 HPATLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSDPN-RQAIAALC 219 (377)
T ss_pred ChhHHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcccch-HHHHHHHH
Confidence 56789999999999999999999998655 333333322110 00122222111 25789999
Q ss_pred HHCCceEEEe
Q 025159 211 KAKDIQLAAY 220 (257)
Q Consensus 211 ~~~gi~v~~~ 220 (257)
+++||.+-++
T Consensus 220 ~~rgI~lASH 229 (377)
T COG3454 220 RERGIALASH 229 (377)
T ss_pred HHcCCceecC
Confidence 9999988765
No 253
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.69 E-value=3.7e+02 Score=24.09 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHHcC--C--eeEEEec--CCCHHHHHHHHHhCC-CCCceeccccCCCCC------c----HHHHHHHH
Q 025159 149 DFKSVWEAMEECQNLG--Y--TKAIGVS--NFSCKKLGDILATAK-IPPAANQVEMNPLWQ------Q----NKLREFCK 211 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~~~~-~~p~~~q~~~~~~~~------~----~~~~~~~~ 211 (257)
.++++++++.+..+.+ + ++++=+. |-+.+.++++.+... ++..++-++||+... . ....+..+
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3677888887776644 2 3344333 555677777766554 445677788888642 1 35577788
Q ss_pred HCCceEEEecCCCC
Q 025159 212 AKDIQLAAYAPLGA 225 (257)
Q Consensus 212 ~~gi~v~~~~pl~~ 225 (257)
++||.+......+.
T Consensus 312 ~~gi~v~vR~~~G~ 325 (349)
T PRK14463 312 DKHVTVITRSSRGS 325 (349)
T ss_pred HCCceEEEeCCCCc
Confidence 89999998887754
No 254
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.69 E-value=2.5e+02 Score=21.56 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=32.8
Q ss_pred hHHHHHHHHHH-HcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEecc
Q 025159 40 ETTKLAILEAM-KLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (257)
Q Consensus 40 ~~~~~~l~~Al-~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~ 94 (257)
+....++...+ +.|++..+.....-....+-+++++..++ .+.|++|+|=.
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVittGG 70 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTTGG 70 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCC
Confidence 34445566555 77988776554444667788888876321 26899999844
No 255
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.53 E-value=2.2e+02 Score=23.75 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=51.7
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (257)
+.++++|-...+...+ +.-....-+....++.+. -.+...||.....-.+.. .. ..-........+.|+.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f--~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~--d~-~~a~~s~~~l~~~L~~L~~~ 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF--EDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFY--DR-ESARFSGPALARFLRDLARA 89 (233)
T ss_pred CCCeEEEEEeCCCCCH--HHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhh--hh-hhHHHHHHHHHHHHHHHHhc
Confidence 6789999999887654 555555556777777655 788889997644312111 11 11111234456666777777
Q ss_pred CCeeEEEecCCC
Q 025159 164 GYTKAIGVSNFS 175 (257)
Q Consensus 164 G~ir~iGvs~~~ 175 (257)
...+.|=+-.|+
T Consensus 90 ~~~~~I~ilaHS 101 (233)
T PF05990_consen 90 PGIKRIHILAHS 101 (233)
T ss_pred cCCceEEEEEeC
Confidence 455556666555
No 256
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=30.49 E-value=2.9e+02 Score=24.42 Aligned_cols=95 Identities=14% Similarity=-0.025 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC-----CCCceeccccCCCCCcHHHHHHHHHCCce-EEEecCCCC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK-----IPPAANQVEMNPLWQQNKLREFCKAKDIQ-LAAYAPLGA 225 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-----~~p~~~q~~~~~~~~~~~~~~~~~~~gi~-v~~~~pl~~ 225 (257)
+.+..+.+..++--=.-+-+-+.+++.++..++.+. -++.+|-++... +++.++.++++|+. +++ =++..
T Consensus 82 eam~k~I~~v~~~~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~---~~eel~llk~yg~aavIv-La~d~ 157 (308)
T PRK00979 82 EAMEKYIDFVSEITDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSI---EEEEIEALKESDIKAAIV-LAFDP 157 (308)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCC---CHHHHHHHHHhCCceEEE-EEcCC
Confidence 344444444443332457778888999999988753 366677555432 23568999999966 332 24433
Q ss_pred CCCCCCCCCccChHH--------HHHHHHHhCCC
Q 025159 226 RGTIWGSNRVMECEV--------LKEIAEAKGKT 251 (257)
Q Consensus 226 ~G~l~~~~~~~~~~~--------~~~ia~~~~~s 251 (257)
+..+....+...+. +.+.|+++|++
T Consensus 158 -~~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~ 190 (308)
T PRK00979 158 -MDPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIE 190 (308)
T ss_pred -CCCCHHHHHHHHHhccccchHHHHHHHHHcCCC
Confidence 32222111212233 67778888874
No 257
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=30.36 E-value=3.7e+02 Score=23.40 Aligned_cols=152 Identities=12% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCceeeCC--C----CCC-C-hHHH---HHHHHHHHhC-CCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 025159 42 TKLAILEAMKLGYRHFDTA--T----LYQ-T-EQPL---GDAIAEALST-GIIKSRDELFIASKLWCSDAHRELVVPALQ 109 (257)
Q Consensus 42 ~~~~l~~Al~~Gi~~~DtA--~----~Yg-~-e~~l---g~~l~~~~~~-~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~ 109 (257)
+...+..+++.|++++|.- + .+| + +..+ -+++++..++ + -|-.+.++. .. ..+++.+++.++
T Consensus 74 ~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~g---i~~~li~~~--~r-~~~~~~~~~~~~ 147 (324)
T TIGR01430 74 AYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFG---IKSRLILCG--MR-HKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcC---CeEEEEEEE--eC-CCCHHHHHHHHH
Confidence 4566777789999999842 1 122 1 2222 2333333111 2 233333332 22 235677777777
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCC
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKI 188 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~ 188 (257)
..++ .+-+.+--+-++..... ...+...+.++..++.|.--.+=++-. ++..+...+...+.
T Consensus 148 ~~~~-~~~~~vvg~~l~~~e~~----------------~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~ 210 (324)
T TIGR01430 148 LAKP-YKEQTIVGFGLAGDERG----------------GPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA 210 (324)
T ss_pred HHHh-hccCcEEEecCCCCCCC----------------CCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc
Confidence 7665 33222222222322111 124566677777777776544444332 23344444432222
Q ss_pred CCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 189 PPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 189 ~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
. ..-.-++ +....+.++.++++||.+..
T Consensus 211 ~--ri~Hg~~-l~~~~~~i~~l~~~gi~v~~ 238 (324)
T TIGR01430 211 T--RIGHGVR-ALEDPELLKRLAQENITLEV 238 (324)
T ss_pred h--hcchhhh-hccCHHHHHHHHHcCceEEE
Confidence 1 1111111 11134678888888887743
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=30.12 E-value=1.2e+02 Score=25.34 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=33.9
Q ss_pred ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 120 IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 120 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
.|+++|......... ...-+++++.+..+++.|+++-|+.|+..+..+
T Consensus 98 ~dlliiDdi~~~~~~------------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 98 LSLVCIDNIECIAGD------------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred CCEEEEeChhhhcCC------------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 589998876442210 011345678888999999988999999887774
No 259
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.11 E-value=3.5e+02 Score=24.47 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccc-----c-CCCCCcHHHHHHHHHCCceEEE
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVE-----M-NPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~-----~-~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
+-+.+-++++++.+.+-.+.++..+..++.+.+..++.+..+++.. | +......++.+++++.+|+|++
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 4455667778888876677777667777777777777776555422 1 2212235788899999999986
No 260
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=30.03 E-value=1.4e+02 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHH
Q 025159 149 DFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 184 (257)
....+.+.+.+++.+|++ |=+|+|..++++++.+
T Consensus 168 ~~r~~~dfi~q~k~egr~--viFSSH~m~EvealCD 201 (245)
T COG4555 168 TRRKFHDFIKQLKNEGRA--VIFSSHIMQEVEALCD 201 (245)
T ss_pred HHHHHHHHHHHhhcCCcE--EEEecccHHHHHHhhh
Confidence 356788889999999986 8899999999888765
No 261
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=29.96 E-value=3.9e+02 Score=23.65 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHH-HcCCceeeCCCCCC---ChHHHHHHHHHHHhCCCCCCCCcEEEEecc
Q 025159 39 SETTKLAILEAM-KLGYRHFDTATLYQ---TEQPLGDAIAEALSTGIIKSRDELFIASKL 94 (257)
Q Consensus 39 ~~~~~~~l~~Al-~~Gi~~~DtA~~Yg---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~ 94 (257)
-.++.+++...+ +.+.+.|= .|. .-..++..++.+++.+. =+++|+|=.
T Consensus 42 l~~A~~i~~~ml~~~~~~ifL---~~tg~mvsaGlr~ii~~Li~~~~----VD~iVtTga 94 (316)
T PRK02301 42 LAEAVDIYEEMLADDDVTKFF---GLAGAMVPAGMRGIVSDLIRDGH----IDVLVTTGA 94 (316)
T ss_pred HHHHHHHHHHHHhCCCCeEEE---EcccchhHHHHHHHHHHHHHcCC----eeEEEcCCC
Confidence 356788888888 56666542 222 46667888888865543 466677653
No 262
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=29.91 E-value=5.9e+02 Score=27.06 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=76.9
Q ss_pred CChhHHHHH----HHHHHHcCCc--eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEE-ecc---C---C-------
Q 025159 37 SGSETTKLA----ILEAMKLGYR--HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIA-SKL---W---C------- 96 (257)
Q Consensus 37 ~~~~~~~~~----l~~Al~~Gi~--~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~-tK~---~---~------- 96 (257)
.+.+++.+. ++..++.|+. .|.|-+..-.-+..-.++++.+++.. .+--++++ +-. + .
T Consensus 141 ~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~--~~lPv~vS~~~~d~~Gr~~~G~~~~~~ 218 (1178)
T TIGR02082 141 VTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKG--RELPIMISGTIVDTSGRTLSGQTIEAF 218 (1178)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEECCCCeeCCCCcHHHH
Confidence 455665544 4444588887 45776665444455556666554322 23456666 222 1 0
Q ss_pred --------------CCC-ChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 97 --------------SDA-HRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 97 --------------~~~-~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.+. +|+.+...+++..+.. +..+.-.|+...| +....+ +...++..+.+.++.
T Consensus 219 ~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~-----~~pi~vyPNAGlP------~~~~~y-d~~p~~~a~~~~~~~ 286 (1178)
T TIGR02082 219 LTSLEHAGIDMIGLNCALGPDEMRPHLKHLSEHA-----EAYVSCHPNAGLP------NAFGEY-DLTPDELAKALADFA 286 (1178)
T ss_pred HHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhc-----CceEEEEeCCCCC------CCCCcc-cCCHHHHHHHHHHHH
Confidence 011 3566655554443322 3333334544333 111122 235678889999999
Q ss_pred HcCCeeEEE-ecCCCHHHHHHHHHhC
Q 025159 162 NLGYTKAIG-VSNFSCKKLGDILATA 186 (257)
Q Consensus 162 ~~G~ir~iG-vs~~~~~~l~~~~~~~ 186 (257)
+.|.++-|| .|..+|+++..+.+..
T Consensus 287 ~~ggv~IIGGCCGTtPeHI~ala~~l 312 (1178)
T TIGR02082 287 AEGGLNIVGGCCGTTPDHIRAIAEAV 312 (1178)
T ss_pred HhCCCcEEEecCCCCHHHHHHHHHHh
Confidence 998899997 6788899998887654
No 263
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.91 E-value=83 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ 64 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 64 (257)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5667788999999999999999999984
No 264
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=29.83 E-value=1.2e+02 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCC
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNP 199 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~ 199 (257)
++.+.+-++.+.+.|+.-=||.+.|+.++++++-+.+.--|.+.--||++
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 57888999999999988889999999999999888777666666666664
No 265
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.68 E-value=3.4e+02 Score=22.82 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCC--C----ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC---CChhhHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLY--Q----TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD---AHRELVVPA 107 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Y--g----~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~---~~~~~i~~~ 107 (257)
.+.++..++++.|.+.|++-+=.++.| | +...+.+.+.++-.. -+..-+-.|+.+.+ .+.+.+..-
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~-----~~~~aidl~v~pGQEIrIt~~vl~~l 91 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEI-----LKKEAIDLKVLPGQEIRITGDVLDDL 91 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHH-----HHhhcCCceeccCceEEEchHHHHHH
Confidence 467899999999999999966444443 2 455565555544111 11112223333322 122222222
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec------CCCHHHHHH
Q 025159 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS------NFSCKKLGD 181 (257)
Q Consensus 108 l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs------~~~~~~l~~ 181 (257)
-+..+- +++-=+.+++..|.... .+.+-+.+-+|.-.|-+=-|-=- .-++..+.+
T Consensus 92 ~~g~I~--tindskYlLIEF~~~~v-----------------~~ya~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lye 152 (254)
T COG4464 92 DKGIIL--TINDSKYLLIEFPMNHV-----------------PRYADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYE 152 (254)
T ss_pred hcCccc--cccccceEEEEccCCcc-----------------hhhHHHHHHHHHHCCceeeeechhhHHHHHhChHHHHH
Confidence 222222 22222567777775433 35666777888888876444321 113344555
Q ss_pred HHHhCCCCCceeccccCCCCC------cHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhC
Q 025159 182 ILATAKIPPAANQVEMNPLWQ------QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKG 249 (257)
Q Consensus 182 ~~~~~~~~p~~~q~~~~~~~~------~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~ 249 (257)
+++... ..|+.-+.+.- .+-.+.+.++.=+.+++.-.-.. +.+++...+.+..+.+++|
T Consensus 153 Lid~ga----~sQvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAHn~-----~~R~f~~~ea~~~~~k~~g 217 (254)
T COG4464 153 LIDKGA----YSQVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAHNV-----DKRPFHMQEAFHLVTKKDG 217 (254)
T ss_pred HHhccc----ceeechHhHHhhhhHHHHHHHHHHHHcccceeeecccccc-----CCCCccHHHHHHHHHHhhh
Confidence 544332 33443332221 12334455555566666544433 3455566677777777776
No 266
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.66 E-value=1.2e+02 Score=27.47 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCC-CCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTG-IIKSR-DELFIASKLWCSDAHRELVVPALQKSLEN 114 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~-~~~~R-~~l~i~tK~~~~~~~~~~i~~~l~~sL~~ 114 (257)
..+.+..+.++.+++.|+- ...|+++.+.. ++.+.+++. .-+.+ +.++.+ ..+...+...++.
T Consensus 38 ~~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~-ai~~w~~~r~~~~i~~e~i~~~----------p~VVpgi~~~I~~ 102 (388)
T COG1168 38 PTPPEIIEALRERVDHGVF----GYPYGSDELYA-AIAHWFKQRHQWEIKPEWIVFV----------PGVVPGISLAIRA 102 (388)
T ss_pred CCCHHHHHHHHHHHhcCCC----CCCCCCHHHHH-HHHHHHHHhcCCCCCcceEEEc----------CcchHhHHHHHHH
Confidence 4677889999999999964 22344554443 333332221 00011 112111 2344455555555
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC-eeEE----EecCC--CHHHHHHHHHhCC
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAI----GVSNF--SCKKLGDILATAK 187 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~i----Gvs~~--~~~~l~~~~~~~~ 187 (257)
|- ..=|-+.++.|.+.. +..+.+ ..|+ +-.. +=..| |.++|++.+...+
T Consensus 103 ~T-~~gd~Vvi~tPvY~P-----------------F~~~i~------~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~ 158 (388)
T COG1168 103 LT-KPGDGVVIQTPVYPP-----------------FYNAIK------LNGRKVIENPLVEDDGRYEIDFDALEKAFVDER 158 (388)
T ss_pred hC-cCCCeeEecCCCchH-----------------HHHHHh------hcCcEEEeccccccCCcEEecHHHHHHHHhcCC
Confidence 53 334889999886521 111111 1111 0001 11223 6677777777666
Q ss_pred CCCceeccccCCCCC---c---HHHHHHHHHCCceEEEec
Q 025159 188 IPPAANQVEMNPLWQ---Q---NKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 188 ~~p~~~q~~~~~~~~---~---~~~~~~~~~~gi~v~~~~ 221 (257)
++..+.=.+-||..+ . ..+.+.|++||+-||+=.
T Consensus 159 vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeec
Confidence 554444445555544 1 467888888888887643
No 267
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.57 E-value=3e+02 Score=27.22 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc--CCeeEEEecCCCHHH
Q 025159 101 RELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYTKAIGVSNFSCKK 178 (257)
Q Consensus 101 ~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~ 178 (257)
.+.+++-++.....-.....-+|+|+..+.. ..+.+++|-+..++ +.+++|.++|.....
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~L------------------s~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhc------------------CHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 4566666655544333345578888876432 23556666666666 889999999986666
Q ss_pred HHHHHHhC
Q 025159 179 LGDILATA 186 (257)
Q Consensus 179 l~~~~~~~ 186 (257)
+.-+...|
T Consensus 168 lpTIrSRC 175 (700)
T PRK12323 168 PVTVLSRC 175 (700)
T ss_pred hhHHHHHH
Confidence 65555544
No 268
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=29.42 E-value=3.7e+02 Score=23.09 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=70.4
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCe-eEEEecCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYT-KAIGVSNF 174 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvs~~ 174 (257)
..+.+.+++.++..++.+|+ |-+++-.-.-+.. .+..+|-.+.++..++ .|++ -.+|++..
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv---~gi~~~GstGE~~-------------~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGV---DGLYVNGSTGEGF-------------LLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCC---CEEEECcCCcCcc-------------cCCHHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 45778889999998886675 5566655432211 3445554454544444 4554 45699887
Q ss_pred CHHHHHHHH---HhCCCCCceeccccCCCCCcHHHHH----HHHHC-CceEEEec-CCCCCCCCCCCCCccChHHHHHHH
Q 025159 175 SCKKLGDIL---ATAKIPPAANQVEMNPLWQQNKLRE----FCKAK-DIQLAAYA-PLGARGTIWGSNRVMECEVLKEIA 245 (257)
Q Consensus 175 ~~~~l~~~~---~~~~~~p~~~q~~~~~~~~~~~~~~----~~~~~-gi~v~~~~-pl~~~G~l~~~~~~~~~~~~~~ia 245 (257)
+.....++. +..+.+-.++.-++..-..+.++++ .|+.- +++++.|+ |... |. .+..+.+.+++
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~t-g~------~l~~~~~~~L~ 153 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALT-GV------NLTLEQFLELF 153 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcccc-CC------CCCHHHHHHHh
Confidence 766544443 3344554444445443223445555 45566 89999997 4333 42 23345555665
No 269
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=29.37 E-value=2.3e+02 Score=20.70 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC---CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL---EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~---d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (257)
.|=.+.|+-|++. ...++.+++.+.+.++.... ...|++++-.+.... .+..++-+.|..|
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~---------------~~~~~l~~~l~~l 101 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE---------------LDYKEIKKSLIHV 101 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc---------------CCHHHHHHHHHHH
Confidence 5777888888766 67789999999999987643 356999998875432 2356667777776
Q ss_pred HHc
Q 025159 161 QNL 163 (257)
Q Consensus 161 ~~~ 163 (257)
.+.
T Consensus 102 l~k 104 (114)
T PRK00499 102 LKL 104 (114)
T ss_pred HHH
Confidence 553
No 270
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.31 E-value=3.3e+02 Score=22.47 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHcCCc-eeeCCCCC
Q 025159 37 SGSETTKLAILEAMKLGYR-HFDTATLY 63 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~-~~DtA~~Y 63 (257)
...+-+.++++.+-+.|+. .+||+..+
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4555578888888899985 78988755
No 271
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.12 E-value=3.6e+02 Score=22.96 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCC
Q 025159 66 EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGS 135 (257)
Q Consensus 66 e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~ 135 (257)
-..+.-.|.+. - .|+++.+-+=......+|+.+.+.....++..+ .|++.+-.|+...||.
T Consensus 16 s~~idl~lDEr---A---dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~---pDf~i~isPN~a~PGP 76 (277)
T PRK00994 16 SPVIDLLLDER---A---DREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK---PDFVIVISPNPAAPGP 76 (277)
T ss_pred HHHHHHHHHhh---h---cccCceEEEeccCCCCCHHHHHHHHHHHHHhhC---CCEEEEECCCCCCCCc
Confidence 34444455543 2 688766555545556678888888888888887 5788888888776644
No 272
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=29.03 E-value=4.3e+02 Score=23.82 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC-CcHHHHHHHHHCCceEE
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW-QQNKLREFCKAKDIQLA 218 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~-~~~~~~~~~~~~gi~v~ 218 (257)
..+..+++.++++.=.|=-|+=-.|+.....++++..--+..+|..++--.. .-..+++.|+++|+++=
T Consensus 65 ~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIR 134 (360)
T PRK00366 65 DMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIR 134 (360)
T ss_pred CHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEE
Confidence 3577889999999888888888889998888888875444344433331101 11689999999999884
No 273
>PRK15452 putative protease; Provisional
Probab=29.02 E-value=4.8e+02 Score=24.29 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCceeeCCC-CCC--------ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTAT-LYQ--------TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~-~Yg--------~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
.+.++.|+++|...+=... .|+ +..-+.++++.+ +. .-.++++++-....+..-+.+.+.++ .+.
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~a---h~--~g~kvyvt~n~i~~e~el~~~~~~l~-~l~ 86 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEA---HA--LGKKFYVVVNIAPHNAKLKTFIRDLE-PVI 86 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHH---HH--cCCEEEEEecCcCCHHHHHHHHHHHH-HHH
Confidence 5678899999998665422 122 234466666644 21 22468887775544322233333332 233
Q ss_pred hhCCCcccEEEeecC
Q 025159 114 NLQLEYIDLYVIHWP 128 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p 128 (257)
.+| +|-+++.++
T Consensus 87 ~~g---vDgvIV~d~ 98 (443)
T PRK15452 87 AMK---PDALIMSDP 98 (443)
T ss_pred hCC---CCEEEEcCH
Confidence 444 788998886
No 274
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=29.01 E-value=1.9e+02 Score=21.85 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
|..+++.|+.+.-..+|.++++.++...+ +..++...++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R---------------~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGR---------------NYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhcc---------------CHHHHHHHHHHHHhhcCcEEEEe
Confidence 56677777777777899999998876543 35566777777777634444444
No 275
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=29.00 E-value=5e+02 Score=24.50 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=67.1
Q ss_pred cceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhH
Q 025159 27 LGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELV 104 (257)
Q Consensus 27 lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i 104 (257)
+.|++.-.++.+.+.+.++++.|.+.|...|-.++..| ....+.+.++...+. .. .++++.|...++.... -.+
T Consensus 133 v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~-~~~~v~l~~H~HND~G--lAv 208 (494)
T TIGR00973 133 VEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLREN-VP-NIDKAILSVHCHNDLG--LAV 208 (494)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-hc-cccCceEEEEeCCCCC--hHH
Confidence 55665555556777778888888888877776666655 344444444433211 10 2344556555443221 122
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHH
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILA 184 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 184 (257)
-.++.. + +-|.+++|.=+.---.. -.-.+.+++...|+..++...+. .+.+...|.++.+
T Consensus 209 ANalaA-v-~aGa~~vd~tv~GlGER--------------aGNa~le~vv~~L~~~~~~~g~~----~~idl~~L~~~s~ 268 (494)
T TIGR00973 209 ANSLAA-V-QNGARQVECTINGIGER--------------AGNAALEEVVMALKVRKDFLGVE----TGINTKEIYRTSR 268 (494)
T ss_pred HHHHHH-H-HhCCCEEEEEeeccccc--------------ccCccHHHHHHHHHHhcccCCCC----CCcCHHHHHHHHH
Confidence 222222 2 25666666655443211 11134777777777543321121 2455555554433
No 276
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=28.78 E-value=3.4e+02 Score=22.47 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhH-----HHHHHHHHHhh
Q 025159 41 TTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELV-----VPALQKSLENL 115 (257)
Q Consensus 41 ~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i-----~~~l~~sL~~L 115 (257)
+..+.++.|++.|++-+=+.+.| ....++.+. + ..-.+-+..++.......+.- ...+++.++ +
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~------~~~~~~~~~-~---~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~-~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGY------VKPAAELLA-G---SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR-L 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGG------HHHHHHHST-T---STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH-T
T ss_pred hHHHHHHHHHHhCCCEEEECHHH------HHHHHHHhh-c---cccccceEEEeCCCCCccccccccchHHHHHHHHH-c
Confidence 78999999999999988777777 223333311 1 233677777876655544444 577887754 9
Q ss_pred CCCcccEEEeec
Q 025159 116 QLEYIDLYVIHW 127 (257)
Q Consensus 116 g~d~lDl~~lh~ 127 (257)
|.|-+|+++-..
T Consensus 89 GAd~vd~vi~~~ 100 (236)
T PF01791_consen 89 GADEVDVVINYG 100 (236)
T ss_dssp T-SEEEEEEEHH
T ss_pred CCceeeeecccc
Confidence 999999988763
No 277
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=1.1e+02 Score=23.02 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhCC-CCCceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 175 SCKKLGDILATAK-IPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 175 ~~~~l~~~~~~~~-~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
+++.++.+++.++ +...++-..-........+.+.|++.||++-.++.=
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~ 105 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTG 105 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccch
Confidence 4677777777665 333333333333344578999999999999877643
No 278
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.50 E-value=4.7e+02 Score=24.08 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC--CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCC
Q 025159 62 LYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFP 139 (257)
Q Consensus 62 ~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~--~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~ 139 (257)
.||.++.+-++|++..+.. +.+-++|.|-+-+. ..+.+.+.+.+++-... ..-+.++.++.|.....
T Consensus 72 VfGg~~~L~~~I~~~~~~~---~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~------ 140 (432)
T TIGR01285 72 ILGGDEHIEEAIDTLCQRN---KPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGS------ 140 (432)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCc------
Confidence 4788889999998886553 34567777776442 22333333333322110 01257888887755321
Q ss_pred CcccCCCCccHHHHHHHHH-HHH--------HcCCeeEEEecCC---CHHHHHHHHHhCCCCCc
Q 025159 140 IKKEDFLPMDFKSVWEAME-ECQ--------NLGYTKAIGVSNF---SCKKLGDILATAKIPPA 191 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~-~l~--------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~p~ 191 (257)
.......++++|. ++. +.++|--||-++. +.+++.++++..++++.
T Consensus 141 ------~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 141 ------LEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred ------hHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 1122444555543 222 1456777786644 56778888888887753
No 279
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=28.47 E-value=3.9e+02 Score=24.06 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=61.0
Q ss_pred EEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-------CCCHHHHHHHHHhCC-CCCceec
Q 025159 123 YVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-------NFSCKKLGDILATAK-IPPAANQ 194 (257)
Q Consensus 123 ~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~~p~~~q 194 (257)
+-||.|++..+.... |... ...+++...+.+...+... +.|-+- |-+.++.+++.+... ++..+|-
T Consensus 216 iSLHa~nd~lR~~L~-Pink----~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNL 289 (349)
T COG0820 216 ISLHAPNDELRDQLM-PINK----KYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNL 289 (349)
T ss_pred EecCCCCHHHHhhhh-cccc----CCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEE
Confidence 678998765431111 1111 1236777777777665444 444332 556788888777665 5558999
Q ss_pred cccCCCCCc----------HHHHHHHHHCCceEEEecCCCC
Q 025159 195 VEMNPLWQQ----------NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++||+.... ....+..+++||.+.....-+.
T Consensus 290 IP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 290 IPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred eecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 999987531 2445666678899988877654
No 280
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=28.46 E-value=70 Score=25.18 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=34.8
Q ss_pred CC-ChHHHHHHHHHHHhCCCCCCCC---cEEEEeccCCC----------CCChhhHHHHHHHHHHh
Q 025159 63 YQ-TEQPLGDAIAEALSTGIIKSRD---ELFIASKLWCS----------DAHRELVVPALQKSLEN 114 (257)
Q Consensus 63 Yg-~e~~lg~~l~~~~~~~~~~~R~---~l~i~tK~~~~----------~~~~~~i~~~l~~sL~~ 114 (257)
+| .+..+++++.+++++|++ +++ +++|..-+|-+ ++.++..+.++++.++.
T Consensus 76 fGpaQaavA~AVaD~V~eG~i-P~~~a~dl~Iiv~Vfi~p~a~D~~kiy~~NY~AtklAI~rAm~~ 140 (159)
T PF08714_consen 76 FGPAQAAVAKAVADAVEEGII-PKDEADDLVIIVSVFIHPDALDDKKIYRYNYEATKLAIKRAMNG 140 (159)
T ss_dssp CTHHHHHHHHHHHHHHHTTSS--TTTGGGEEEEEEEE--TT---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHcCCC-ChhhcCcEEEEEEEEeCccccCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34 588899999999999887 554 78888888752 12345666667666653
No 281
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.29 E-value=1.3e+02 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHcCCeeEEEec-CCCHHHHHHHHH
Q 025159 148 MDFKSVWEAMEECQNLGYTKAIGVS-NFSCKKLGDILA 184 (257)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~ 184 (257)
...+++..+|+.. .|+. +++.+.+.++.+
T Consensus 231 a~lE~vv~~L~~~--------~g~~~~idl~~l~~~s~ 260 (378)
T PRK11858 231 AALEEVVMALKYL--------YGIDLGIDTERLYELSR 260 (378)
T ss_pred ccHHHHHHHHHHH--------hCCCCCcCHHHHHHHHH
Confidence 3467777777643 2333 366666655544
No 282
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.21 E-value=4e+02 Score=23.14 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
.+...++.+++.-.+ -|.|-+++++.++++++.. .+ .+|-+ +.+. +.++++.|+++|.+++.+.-
T Consensus 77 Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~G-ad-iINDI--~g~~-d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 77 RVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAG-AH-IINDI--RSLS-EPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred HHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcC-CC-EEEEC--CCCC-CHHHHHHHHHcCCCEEEEcC
Confidence 355566777754233 4899999999999999864 32 34432 3332 45788999999999998853
No 283
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=28.11 E-value=3.8e+02 Score=22.84 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC-eeEEEecCCCHHHHHHH
Q 025159 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY-TKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 104 i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~ 182 (257)
-+..+-+.|.++|++.|.+- +|.. ..+.+++.+.+.+.++ .+-.+....+.+.++.+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG---~P~~-------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELT---SPAA-------------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIA 80 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEE---CCCC-------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHH
Confidence 34555566999998777765 3532 1233555555554443 34455667788888888
Q ss_pred HHhCCCCCceeccccCC-------CCC--c-----HHHHHHHHHCCceEEEe
Q 025159 183 LATAKIPPAANQVEMNP-------LWQ--Q-----NKLREFCKAKDIQLAAY 220 (257)
Q Consensus 183 ~~~~~~~p~~~q~~~~~-------~~~--~-----~~~~~~~~~~gi~v~~~ 220 (257)
.+. +++..-+-++.|. ... + .+++.+++++|+.+...
T Consensus 81 ~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 81 VET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred HHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 774 4332111112111 111 1 45679999999876654
No 284
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=28.00 E-value=94 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHcCCeeEEEecCC
Q 025159 149 DFKSVWEAMEECQNLGYTKAIGVSNF 174 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~G~ir~iGvs~~ 174 (257)
+.+.+-..|+.|.+.|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 36677788889999999999987665
No 285
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=27.99 E-value=2.2e+02 Score=24.21 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCC--CCceeccccCC
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKI--PPAANQVEMNP 199 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~--~p~~~q~~~~~ 199 (257)
.....+.+..+.+.|+---+|...++.++.+++.+.+.- .+.++-.++++
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSl 129 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSI 129 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccH
Confidence 567788888999999887889999999888888777654 44455455554
No 286
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.75 E-value=1.3e+02 Score=26.13 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Q 025159 102 ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGD 181 (257)
Q Consensus 102 ~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 181 (257)
...++.+.-.+.-++ ..++++|.-|...-+ .....++|+.+.++.++|. +.|=+|+|..+.++.
T Consensus 139 ~G~kqrl~ia~aL~~--~P~lliLDEPt~GLD-------------p~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~ 202 (293)
T COG1131 139 GGMKQRLSIALALLH--DPELLILDEPTSGLD-------------PESRREIWELLRELAKEGG-VTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEECCCCcCCC-------------HHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHH
Confidence 345555555555555 359999998866432 3446789999999999996 458899999999888
Q ss_pred HHH
Q 025159 182 ILA 184 (257)
Q Consensus 182 ~~~ 184 (257)
+.+
T Consensus 203 ~~d 205 (293)
T COG1131 203 LCD 205 (293)
T ss_pred hCC
Confidence 744
No 287
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.54 E-value=2.5e+02 Score=20.53 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=13.6
Q ss_pred CCcHHHHHHHHHCCceEEEe
Q 025159 201 WQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 201 ~~~~~~~~~~~~~gi~v~~~ 220 (257)
..+.++.++|+++|+.++.-
T Consensus 89 ~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S--HHHHHHHHHTT-EEEES
T ss_pred hHHHHHHHHHHHcCCEEEeC
Confidence 34468899999999988853
No 288
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=98 Score=25.28 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEec
Q 025159 176 CKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 176 ~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~ 221 (257)
.+.++-+++...++|.+ ++.+++|++++|+++.-|
T Consensus 62 ~Eile~llk~i~Idp~f-----------Kef~e~ike~di~fiVvS 96 (220)
T COG4359 62 EEILEFLLKDIKIDPGF-----------KEFVEWIKEHDIPFIVVS 96 (220)
T ss_pred HHHHHHHHhhcccCccH-----------HHHHHHHHHcCCCEEEEe
Confidence 44555555556665433 479999999999998765
No 289
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=27.36 E-value=5e+02 Score=24.01 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=62.0
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCC----CCCCCCCcccCCCCccHHHHHHHHHHHHHc----CCeeEE
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKP----GSYEFPIKKEDFLPMDFKSVWEAMEECQNL----GYTKAI 169 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----G~ir~i 169 (257)
..++....+.+ .....+..-.++||.|-+... +...............++.+.+.++...+. ..|..|
T Consensus 32 ~~~~~~~~~~~----~~~~~~~~~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i 107 (453)
T PRK13347 32 AFGEDTYREWL----RQIGPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQL 107 (453)
T ss_pred CCCHHHHHHHH----HhccCCCceEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34444444444 222333344789998876321 110000001111111234455555543332 245555
Q ss_pred Eec--C---CCHHHHHHHHHhCC----CCC-ceeccccCCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 170 GVS--N---FSCKKLGDILATAK----IPP-AANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 170 Gvs--~---~~~~~l~~~~~~~~----~~p-~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
-+. + .+++++.++++... +.+ .-+-++.|+..-..+.++.+++.|+.-+..+.-.
T Consensus 108 ~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS 172 (453)
T PRK13347 108 HWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQD 172 (453)
T ss_pred EEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 443 2 45788888876542 211 1223445555556789999999998887776543
No 290
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=27.25 E-value=3.8e+02 Score=22.62 Aligned_cols=175 Identities=13% Similarity=0.053 Sum_probs=82.8
Q ss_pred CceecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC----ChHHHHHHHHHHHhCCCCCCCCcE
Q 025159 13 PDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRDEL 88 (257)
Q Consensus 13 ~~~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg----~e~~lg~~l~~~~~~~~~~~R~~l 88 (257)
....+|.+ .|.|+.-... .+.++..+..+.+...|..+++.=-.|= +...+...++.....- ..-.+
T Consensus 7 ~~~~~~~~---~~~i~v~l~~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~---~~~Pi 77 (253)
T PRK02412 7 KNLVIGEG---APKIIVPIMG---KTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKF---AGKPL 77 (253)
T ss_pred eceEeCCC---CcEEEEEeCC---CCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhc---CCCcE
Confidence 44445544 5555544333 4667777777777778887664333331 2233444443331111 12245
Q ss_pred EEEeccCC----CCCChhhHHHHHHHHHHhhC-CCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc
Q 025159 89 FIASKLWC----SDAHRELVVPALQKSLENLQ-LEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL 163 (257)
Q Consensus 89 ~i~tK~~~----~~~~~~~i~~~l~~sL~~Lg-~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 163 (257)
.++..... ...+ +.-+..+-+.+-+++ .||+|+=+-. ..+..+.+....++
T Consensus 78 I~T~R~~~eGG~~~~~-~~~~~~ll~~~~~~~~~d~vDiEl~~-----------------------~~~~~~~l~~~~~~ 133 (253)
T PRK02412 78 LFTFRTAKEGGEIALS-DEEYLALIKAVIKSGLPDYIDVELFS-----------------------GKDVVKEMVAFAHE 133 (253)
T ss_pred EEEECChhhCCCCCCC-HHHHHHHHHHHHhcCCCCEEEEeccC-----------------------ChHHHHHHHHHHHH
Confidence 55555421 1223 233333444455678 8999983311 12344555555456
Q ss_pred CCeeEEEecCCC----H--HHHHHHHHhCC-CCCceeccccCCCCCc--HHHHHHHHH-----CCceEEEec
Q 025159 164 GYTKAIGVSNFS----C--KKLGDILATAK-IPPAANQVEMNPLWQQ--NKLREFCKA-----KDIQLAAYA 221 (257)
Q Consensus 164 G~ir~iGvs~~~----~--~~l~~~~~~~~-~~p~~~q~~~~~~~~~--~~~~~~~~~-----~gi~v~~~~ 221 (257)
+.++-|+ |-|+ + +.+..+++.+. ..++++-+-..+-... ..++.+.++ .++++++++
T Consensus 134 ~~~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~ 204 (253)
T PRK02412 134 HGVKVVL-SYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMS 204 (253)
T ss_pred cCCEEEE-eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 6677666 6553 2 44444433332 2233443333332222 345555432 356665543
No 291
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.20 E-value=2.9e+02 Score=25.20 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=55.7
Q ss_pred eeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC----------------CCChhhHHHHHHHHHHhhCC-C
Q 025159 56 HFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS----------------DAHRELVVPALQKSLENLQL-E 118 (257)
Q Consensus 56 ~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~----------------~~~~~~i~~~l~~sL~~Lg~-d 118 (257)
.+-|-..-|+-++-+++++.. . ++..++|+.=.|+. .++.+.--..++..|..|.. .
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~---~---~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~ 170 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARF---F---PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP 170 (396)
T ss_pred heecCCcchHHHHHHHHHHHh---C---CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCC
Confidence 344444445788889999887 4 67779999888863 12222222334444444422 2
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH-cCCeeEE
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN-LGYTKAI 169 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~ir~i 169 (257)
.=|+++||...-.+.|-+ ...+.|+.+.++.+ .|+|=.+
T Consensus 171 ~~~vvLLH~CcHNPTG~D------------~t~~qW~~l~~~~~~r~lip~~ 210 (396)
T COG1448 171 EGSVVLLHGCCHNPTGID------------PTEEQWQELADLIKERGLIPFF 210 (396)
T ss_pred CCCEEEEecCCCCCCCCC------------CCHHHHHHHHHHHHHcCCeeee
Confidence 458999996533222221 14678888888655 5555433
No 292
>PHA02820 phospholipase-D-like protein; Provisional
Probab=27.18 E-value=5e+02 Score=23.93 Aligned_cols=43 Identities=7% Similarity=0.230 Sum_probs=20.7
Q ss_pred CCcEEEEeccCCCC---CCh-----hhHHHHHHHHHHhhCCCcccEEEeecC
Q 025159 85 RDELFIASKLWCSD---AHR-----ELVVPALQKSLENLQLEYIDLYVIHWP 128 (257)
Q Consensus 85 R~~l~i~tK~~~~~---~~~-----~~i~~~l~~sL~~Lg~d~lDl~~lh~p 128 (257)
++.++|+|=-+.++ ++. ..+..+|.+.-..=|++ +=+++=+|+
T Consensus 231 k~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~-VriLvp~~~ 281 (424)
T PHA02820 231 SKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVS-VKLLISCWQ 281 (424)
T ss_pred hhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCE-EEEEEeccC
Confidence 56777777554443 111 34555555433344542 344444444
No 293
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=4.1e+02 Score=22.80 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=60.9
Q ss_pred CccceeCCcCCC-----CChhHHHHHHHHHHHcCCceeeCCCC-CC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCC
Q 025159 25 PVLGLGTAASPF-----SGSETTKLAILEAMKLGYRHFDTATL-YQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWC 96 (257)
Q Consensus 25 s~lglG~~~~~~-----~~~~~~~~~l~~Al~~Gi~~~DtA~~-Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~ 96 (257)
..||+++|.... -+.....+-....+...+|.++.-.. |. +++.+-+|.++ ..+++..+.|++.
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~ 74 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPR 74 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEecc
Confidence 356777776543 12223334444555666777765544 55 68888888775 3699999999965
Q ss_pred CCCC-------hhhHHHHHHHHHHhhCCCcccEEEeecCCCC
Q 025159 97 SDAH-------RELVVPALQKSLENLQLEYIDLYVIHWPVSS 131 (257)
Q Consensus 97 ~~~~-------~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~ 131 (257)
.--+ -..+.+.+.+-++.|| +++..+++.-|-..
T Consensus 75 ~iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 75 AITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred cccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 3111 1334444555566777 58999999988554
No 294
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.79 E-value=3.8e+02 Score=24.00 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCCCCceecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCc--eeeCCCCCCChHHHHHHHHHHHhCCCCCCCC
Q 025159 9 SISIPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYR--HFDTATLYQTEQPLGDAIAEALSTGIIKSRD 86 (257)
Q Consensus 9 ~~~m~~~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~--~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~ 86 (257)
+++|.+..++.| ..+-.+|+|. +| .-.+..|-..|.+ .||++..= --++++.+ | -|
T Consensus 171 YspLk~~g~~pG-~~vgI~GlGG--LG-------h~aVq~AKAMG~rV~vis~~~~k-----keea~~~L---G----Ad 228 (360)
T KOG0023|consen 171 YSPLKRSGLGPG-KWVGIVGLGG--LG-------HMAVQYAKAMGMRVTVISTSSKK-----KEEAIKSL---G----AD 228 (360)
T ss_pred eehhHHcCCCCC-cEEEEecCcc--cc-------hHHHHHHHHhCcEEEEEeCCchh-----HHHHHHhc---C----cc
Confidence 667888888866 8899999998 33 4556666666665 67766421 23455655 4 35
Q ss_pred cEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCe
Q 025159 87 ELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYT 166 (257)
Q Consensus 87 ~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 166 (257)
.++++++ +++ +.+++..++. .+.+.+-.+ -+ ...-..+.-+|..|++
T Consensus 229 ~fv~~~~------d~d-~~~~~~~~~d-g~~~~v~~~-a~------------------------~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 229 VFVDSTE------DPD-IMKAIMKTTD-GGIDTVSNL-AE------------------------HALEPLLGLLKVNGTL 275 (360)
T ss_pred eeEEecC------CHH-HHHHHHHhhc-Ccceeeeec-cc------------------------cchHHHHHHhhcCCEE
Confidence 5555554 333 3444444443 233222222 11 1223567788999999
Q ss_pred eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC-C--cHHHHHHHHHCCceE
Q 025159 167 KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW-Q--QNKLREFCKAKDIQL 217 (257)
Q Consensus 167 r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~-~--~~~~~~~~~~~gi~v 217 (257)
-.+|+-.. +..+.-..-. +. ...+..|..- + -+++++||.+++|..
T Consensus 276 V~vg~p~~-~~~~~~~~li--l~--~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEK-PLKLDTFPLI--LG--RKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCC-cccccchhhh--cc--cEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 99999665 2222111110 00 1111222221 2 268999999997654
No 295
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=26.63 E-value=3e+02 Score=21.30 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=27.0
Q ss_pred CcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 025159 86 DELFIASKLWCSDAHRELVVPALQKSLENLQL 117 (257)
Q Consensus 86 ~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~ 117 (257)
.++++..|-.....+...+.+++...|+++++
T Consensus 86 ~DiVviar~~~~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 86 GDYVVVARSAAAKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCEEEEEeCCcccCCHHHHHHHHHHHHHHhCc
Confidence 37777788777777889999999999999875
No 296
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.60 E-value=4.2e+02 Score=23.55 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=38.7
Q ss_pred eeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCC
Q 025159 166 TKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 166 ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++..-+...+.+.+++.++. +.+..++..+-||.... ..+.+.|+++|+.++.=...+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 44444555677777776643 34444555566775432 6789999999999887766643
No 297
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.57 E-value=3.3e+02 Score=23.11 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC------CChhhHHHHHHH
Q 025159 39 SETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD------AHRELVVPALQK 110 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~------~~~~~i~~~l~~ 110 (257)
+....+.++.+-+.|++.++.+...- ++...-++++.. ....+.+.+-++..+ .+++.+.+++++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 45567888888899999999888765 566777788877 556688888886543 346777888888
Q ss_pred HHHhhCCCcccEEEeecC
Q 025159 111 SLENLQLEYIDLYVIHWP 128 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p 128 (257)
-|+. | .|.+++..-
T Consensus 156 dLeA-G---A~~ViiEar 169 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHHH-T---ECEEEE--T
T ss_pred HHHC-C---CCEEEEeee
Confidence 8875 6 577888765
No 298
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.54 E-value=2.4e+02 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=28.4
Q ss_pred HHHHHHHHHH---HcCCeeEEEecCCCHHHHHHHHHhCCCCC
Q 025159 152 SVWEAMEECQ---NLGYTKAIGVSNFSCKKLGDILATAKIPP 190 (257)
Q Consensus 152 ~~~~~l~~l~---~~G~ir~iGvs~~~~~~l~~~~~~~~~~p 190 (257)
..+..|.+++ ++..++.||||.-+.+.+.++.+...++.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~ 84 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPF 84 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSS
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcccc
Confidence 4455555555 35578999999999998988888766443
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=26.52 E-value=1.5e+02 Score=27.00 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCcEEEEeccC----------CCCCC----hhhHHHHHHHHHHhhCCCcccEEEeecCCC
Q 025159 65 TEQPLGDAIAEALSTGIIKSRDELFIASKLW----------CSDAH----RELVVPALQKSLENLQLEYIDLYVIHWPVS 130 (257)
Q Consensus 65 ~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~----------~~~~~----~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~ 130 (257)
++..+...+++. ...-+||-||+- +..++ -+.||+.+.+.|++-|+....+|++-+.+.
T Consensus 129 ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 566778888876 456888999982 12333 357788899999999999999999988643
No 300
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.40 E-value=3.7e+02 Score=22.21 Aligned_cols=65 Identities=12% Similarity=-0.009 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC-------cHHHHHHHHHCC-ceEEEecCC
Q 025159 155 EAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ-------QNKLREFCKAKD-IQLAAYAPL 223 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~-------~~~~~~~~~~~g-i~v~~~~pl 223 (257)
....++...+++ ||+|+|+.+++.++.+.. .+...+ .++-+... .-+.+...++.. |++++..-+
T Consensus 95 ~~ar~~~~~~~i--IG~S~h~~eea~~A~~~g-~DYv~~-GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi 167 (211)
T COG0352 95 AEARELLGPGLI--IGLSTHDLEEALEAEELG-ADYVGL-GPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI 167 (211)
T ss_pred HHHHHhcCCCCE--EEeecCCHHHHHHHHhcC-CCEEEE-CCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC
Confidence 334456666665 999999999999987763 111111 11111111 134555666665 999887443
No 301
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=26.13 E-value=1.4e+02 Score=27.14 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhCC---CCCceeccccCCCC-Cc------HHHHHHHHHCCceEEEec
Q 025159 173 NFSCKKLGDILATAK---IPPAANQVEMNPLW-QQ------NKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 173 ~~~~~~l~~~~~~~~---~~p~~~q~~~~~~~-~~------~~~~~~~~~~gi~v~~~~ 221 (257)
|++.+.|+++++.-+ ++..+.-+-.|... ++ +.+.++|++++|+++--+
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeeh
Confidence 667777777777654 33233323333322 21 678888999999887544
No 302
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.08 E-value=3.9e+02 Score=22.49 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCC---CcHHHHHHHHHCCceEEEecCCC
Q 025159 153 VWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLW---QQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~---~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
-++.+.++. .+.=-..|=|-++...+..+++...++ ++|.....+. .-..+.+.|+++|+.++..+-+.
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d--~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALG--ALVLKPALLGGPRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCC--EEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchh
Confidence 356666666 333345677777777888887765554 6666655432 23678999999999998875443
No 303
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=26.06 E-value=4.6e+02 Score=23.08 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHHHHcC--CceeeCCCCCCChHHHHHHHHHHHhCCCCCC----CCcEEEEeccCC-------CCCChhh
Q 025159 37 SGSETTKLAILEAMKLG--YRHFDTATLYQTEQPLGDAIAEALSTGIIKS----RDELFIASKLWC-------SDAHREL 103 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~G--i~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~----R~~l~i~tK~~~-------~~~~~~~ 103 (257)
.+.....+.+..+++.. .--+.+-..|.++..+-+++.+.+.+...+. .+.++++...-+ .+.-+..
T Consensus 129 ~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~ 208 (316)
T PF00762_consen 129 STTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQ 208 (316)
T ss_dssp TTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHH
Confidence 34455566666666442 1122222344443333333333322211101 244555554411 2223567
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec--CCCHHHHHH
Q 025159 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS--NFSCKKLGD 181 (257)
Q Consensus 104 i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~ 181 (257)
+.+..+...++||... +.+-+.....+++|..| .+-+.|++|.++| ++.|=|. +|-.+.++-
T Consensus 209 ~~~t~~~i~~~l~~~~---~~~~fQS~~g~~~WL~P------------~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lET 272 (316)
T PF00762_consen 209 CEETARLIAERLGLPE---WRLAFQSRFGPGEWLGP------------STEDVLEELAKEG-VKRVVVVPPGFVSDCLET 272 (316)
T ss_dssp HHHHHHHHHHHTTTSS---EEEEEES-SSSS-BSSS------------BHHHHHHHHHHCT--SEEEEEETT-SSSSHHH
T ss_pred HHHHHHHHHHHcCCCc---eEEEEECCCCCCCCccc------------cHHHHHHHHHhcC-CCeEEEECCccccccHhH
Confidence 7788888888888765 33333332233333322 3447778888888 4444322 222233333
Q ss_pred HHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 182 ILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 182 ~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
+.+ + +-+..+.+++.|+.-+.+-|.-
T Consensus 273 l~e---i--------------die~re~~~~~G~~~~~~ip~l 298 (316)
T PF00762_consen 273 LYE---I--------------DIEYRELAEEAGGEEFVRIPCL 298 (316)
T ss_dssp HCC---C--------------CCHHHHHHHHHTCCEEEE---S
T ss_pred HHH---H--------------HHHHHHHHHHcCCceEEEeCCC
Confidence 211 1 1246788888888666665543
No 304
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=26.02 E-value=5.4e+02 Score=23.98 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC-CCCceecc--ccCCC-C-------C-----cHHHHHHHHHC
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK-IPPAANQV--EMNPL-W-------Q-----QNKLREFCKAK 213 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~p~~~q~--~~~~~-~-------~-----~~~~~~~~~~~ 213 (257)
.++.++.+.++.++ ..+.+.+.++..... ..|...+. .-++. . . -.+.++..++.
T Consensus 200 ~~~~~~~~a~~v~~---------~vDld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~ 270 (451)
T COG1797 200 LEAKLEALAEVVEK---------HVDLDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREA 270 (451)
T ss_pred HHHHHHHHHHHHHh---------hCCHHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHC
Confidence 56677777777754 346667777666442 23322221 11110 0 0 26899999999
Q ss_pred CceEEEecCCCC
Q 025159 214 DIQLAAYAPLGA 225 (257)
Q Consensus 214 gi~v~~~~pl~~ 225 (257)
|-.++-+|||..
T Consensus 271 GAelv~FSPL~D 282 (451)
T COG1797 271 GAELVFFSPLAD 282 (451)
T ss_pred CCEEEEeCCcCC
Confidence 999999999985
No 305
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=25.91 E-value=1.3e+02 Score=24.86 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC
Q 025159 108 LQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (257)
Q Consensus 108 l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 175 (257)
+.+.++.++ +|++|||...+ .+..+.+.+...-.-+++|.++.-.
T Consensus 67 i~~i~~~~~---ld~VQlHG~e~--------------------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 67 ILEIAEELG---LDAVQLHGDED--------------------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHHHHhcC---CCEEEECCCCC--------------------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 344444444 79999999732 2444444444444578999997654
No 306
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=25.88 E-value=95 Score=25.61 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=39.7
Q ss_pred eeccccCCCCCcHHHHHHHH---HCCceEEEecCCCCCCCCCCCCC---------------ccChHHHHHHHHHhCCCcc
Q 025159 192 ANQVEMNPLWQQNKLREFCK---AKDIQLAAYAPLGARGTIWGSNR---------------VMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 192 ~~q~~~~~~~~~~~~~~~~~---~~gi~v~~~~pl~~~G~l~~~~~---------------~~~~~~~~~ia~~~~~s~~ 253 (257)
+|.+.+.+...-..+++-+. +.|=.++.|+|+...|.+|.+.+ +-+.+.+.++|.++|....
T Consensus 109 ~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 109 INMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred hhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccC
Confidence 34333333333344555444 33666899999987677764311 2345889999999998765
Q ss_pred cc
Q 025159 254 QV 255 (257)
Q Consensus 254 qv 255 (257)
++
T Consensus 189 ~~ 190 (204)
T PF06080_consen 189 ED 190 (204)
T ss_pred cc
Confidence 53
No 307
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.81 E-value=5.4e+02 Score=23.85 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCcc
Q 025159 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 204 ~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
.+.++.|+++||.+.+.--++. +..........-+.+.+++....
T Consensus 326 ~~~i~~~~~~Gi~v~~~~IiGl-----Pget~e~~~~ti~~~~~l~~~~~ 370 (472)
T TIGR03471 326 RRFTRDCHKLGIKVHGTFILGL-----PGETRETIRKTIDFAKELNPHTI 370 (472)
T ss_pred HHHHHHHHHCCCeEEEEEEEeC-----CCCCHHHHHHHHHHHHhcCCCce
Confidence 3678888999998776655543 11222223344445555554433
No 308
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=25.71 E-value=2.4e+02 Score=28.75 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=42.9
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCC
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 187 (257)
...+++|..|....+ +..-+..|+...++++.|+ +|=+++|+.++.+.+.....
T Consensus 716 ~p~vi~LDEPstGmD-------------P~arr~lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLD-------------PKARRHLWDIIARLRKNGK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CCCEEEecCCCCCCC-------------HHHHHHHHHHHHHHHhcCC--EEEEEcCCHHHHHHHhhhhh
Confidence 467888888765322 2345789999999999999 88899999999999977654
No 309
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.53 E-value=5.1e+02 Score=23.43 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=57.8
Q ss_pred EEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHH-HHHcCC---eeEEEec--CCCHHHHHHHHHhCC-CCCceec
Q 025159 122 LYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE-CQNLGY---TKAIGVS--NFSCKKLGDILATAK-IPPAANQ 194 (257)
Q Consensus 122 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~p~~~q 194 (257)
.+-||.++........ |.... ..+++++.+++.+ ..+.|+ |+++=+. |.+.+.+.++.+... ....++-
T Consensus 237 aiSL~a~~~e~r~~i~-P~~~~---~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~Vnl 312 (368)
T PRK14456 237 AVSLHSADQEKRERLM-PQAAR---DYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINL 312 (368)
T ss_pred EEEecCCCHHHHHHhc-cccCC---CCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEE
Confidence 3678887664332211 11100 2247788888875 445552 4444333 455556666655544 3345777
Q ss_pred cccCCCCCc----------HHHHHHHHHCCceEEEecCCCC
Q 025159 195 VEMNPLWQQ----------NKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
++||+.... ....+..+++|+.+......|.
T Consensus 313 Ipyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 313 IDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred eeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 788876431 3566777888999988877653
No 310
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.51 E-value=3.2e+02 Score=24.49 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=21.6
Q ss_pred eeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHH
Q 025159 29 LGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAE 75 (257)
Q Consensus 29 lG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~ 75 (257)
|++...++.+.+...++++.+.+.|...|-.++..| ....+.+.++.
T Consensus 131 ~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~ 179 (365)
T TIGR02660 131 VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRA 179 (365)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHH
Confidence 333333334555555555555555555444444433 33334444443
No 311
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=25.50 E-value=3e+02 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHcCCceeeCC
Q 025159 40 ETTKLAILEAMKLGYRHFDTA 60 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~~~DtA 60 (257)
+.....+..+++.|+|+||.-
T Consensus 28 ~~q~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 28 ESSVEGYIQALDHGCRCVELD 48 (135)
T ss_pred cccHHHHHHHHHhCCCEEEEE
Confidence 344678999999999999854
No 312
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=25.41 E-value=2.6e+02 Score=24.89 Aligned_cols=70 Identities=7% Similarity=-0.054 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCc
Q 025159 43 KLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEY 119 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~ 119 (257)
.+.+..++++|+|.+|+.+...+..-.-+.+....+ ....+.+.+-.|.+.+ ..+.+.+.+++--=|.+|
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk-----~~g~vsvi~~GwDPG~--~si~r~~~ea~lp~g~~y 143 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAK-----AAGNVSVISTGWDPGM--FSINRVYGEAVLPKGQTY 143 (324)
T ss_pred HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHH-----HcCCEEEEECCCCcCh--HHHHHHHHhccCCCCcce
Confidence 677778899999999998765543233334443311 1246777776676666 678888888877777665
No 313
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=25.31 E-value=3e+02 Score=20.78 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC----CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL----EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEE 159 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~----d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (257)
.|=.+.|+-|++. ...++.+++.+.++++.+.. ...|++++-.+.... .+..++-+.|..
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~---------------~~~~~l~~~L~~ 110 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN---------------APFSQLTEELSR 110 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc---------------CCHHHHHHHHHH
Confidence 4667788888654 56688999999999987753 457999999885432 235566666665
Q ss_pred HHH
Q 025159 160 CQN 162 (257)
Q Consensus 160 l~~ 162 (257)
+.+
T Consensus 111 ~l~ 113 (129)
T PRK01313 111 RIE 113 (129)
T ss_pred HHH
Confidence 544
No 314
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.26 E-value=5e+02 Score=23.27 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=80.1
Q ss_pred CCCCCCceecCCCCCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCc--eeeCCCCCCChHHHHHHHHHHHhCCCCCCC
Q 025159 8 GSISIPDVPLKSSNRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYR--HFDTATLYQTEQPLGDAIAEALSTGIIKSR 85 (257)
Q Consensus 8 ~~~~m~~~~l~~~~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~--~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R 85 (257)
+++.++...++.| -.|-.+|+|... .-.+..|-..|.+ .||+++. -.- ..+++ +
T Consensus 155 ~y~alk~~~~~pG-~~V~I~G~GGlG---------h~avQ~Aka~ga~Via~~~~~~-----K~e-~a~~l---G----- 210 (339)
T COG1064 155 TYRALKKANVKPG-KWVAVVGAGGLG---------HMAVQYAKAMGAEVIAITRSEE-----KLE-LAKKL---G----- 210 (339)
T ss_pred EeeehhhcCCCCC-CEEEEECCcHHH---------HHHHHHHHHcCCeEEEEeCChH-----HHH-HHHHh---C-----
Confidence 4566666677777 778888888333 5666666666655 4555432 121 22333 2
Q ss_pred CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC
Q 025159 86 DELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (257)
Q Consensus 86 ~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 165 (257)
-+.+|.++ -. ...+.+.+. +|+.+.--+ ...+-.+|.-|+..|.
T Consensus 211 Ad~~i~~~-~~------~~~~~~~~~--------~d~ii~tv~---------------------~~~~~~~l~~l~~~G~ 254 (339)
T COG1064 211 ADHVINSS-DS------DALEAVKEI--------ADAIIDTVG---------------------PATLEPSLKALRRGGT 254 (339)
T ss_pred CcEEEEcC-Cc------hhhHHhHhh--------CcEEEECCC---------------------hhhHHHHHHHHhcCCE
Confidence 45566655 11 112222221 677765544 2345577888999999
Q ss_pred eeEEEecC-CCHHHHHHH-HHhCCCCCceeccccCCCCC-cHHHHHHHHHCCceEEE
Q 025159 166 TKAIGVSN-FSCKKLGDI-LATAKIPPAANQVEMNPLWQ-QNKLREFCKAKDIQLAA 219 (257)
Q Consensus 166 ir~iGvs~-~~~~~l~~~-~~~~~~~p~~~q~~~~~~~~-~~~~~~~~~~~gi~v~~ 219 (257)
+-.+|+-. .....+... +-..++ .+...+..... -.++++||.+++|....
T Consensus 255 ~v~vG~~~~~~~~~~~~~~li~~~~---~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i 308 (339)
T COG1064 255 LVLVGLPGGGPIPLLPAFLLILKEI---SIVGSLVGTRADLEEALDFAAEGKIKPEI 308 (339)
T ss_pred EEEECCCCCcccCCCCHHHhhhcCe---EEEEEecCCHHHHHHHHHHHHhCCceeeE
Confidence 99999874 221111111 111111 11112211111 26899999999987765
No 315
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.22 E-value=5.1e+02 Score=23.73 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCc---HHHHHHHHHCCceEEEecCCCCCC
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQ---NKLREFCKAKDIQLAAYAPLGARG 227 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~---~~~~~~~~~~gi~v~~~~pl~~~G 227 (257)
..++.-++.+.++.-|....+-..+.+.+.+.+...+.+......+-||...- ..+.+.|+++|+-++.=+.++. +
T Consensus 113 G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat-P 191 (396)
T COG0626 113 GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT-P 191 (396)
T ss_pred chHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-c
Confidence 46777888887778887777777777666665543456666777788877653 6789999999999999888876 6
Q ss_pred CCC
Q 025159 228 TIW 230 (257)
Q Consensus 228 ~l~ 230 (257)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 654
No 316
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.16 E-value=3.3e+02 Score=23.29 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCC
Q 025159 21 NRRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSD 98 (257)
Q Consensus 21 ~~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~ 98 (257)
|..+.. ++++..-+..+.+...+.++.+.+.|...|-.++..| ....+.+.++.. |+.+-+..-++.++
T Consensus 131 G~~v~~-~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l--------~~~~~~~l~~H~Hn 201 (275)
T cd07937 131 GKHVEG-AICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKAL--------KKEVGLPIHLHTHD 201 (275)
T ss_pred CCeEEE-EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH--------HHhCCCeEEEEecC
Q ss_pred CChhhHHHHHHHHHHhhCCCcccE
Q 025159 99 AHRELVVPALQKSLENLQLEYIDL 122 (257)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~lDl 122 (257)
...-.+..++... ..|.+++|.
T Consensus 202 d~GlA~aN~laA~--~aGa~~vd~ 223 (275)
T cd07937 202 TSGLAVATYLAAA--EAGVDIVDT 223 (275)
T ss_pred CCChHHHHHHHHH--HhCCCEEEE
No 317
>PRK00077 eno enolase; Provisional
Probab=25.12 E-value=5.4e+02 Score=23.66 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEeccCCC-------------CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCC
Q 025159 68 PLGDAIAEALSTGIIKSRDELFIASKLWCS-------------DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPG 134 (257)
Q Consensus 68 ~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~-------------~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~ 134 (257)
.+-+++++. +.. .=+++.|..-+... ..+++...+.+.+.+++ .++.+|..|-..
T Consensus 221 ~lreAi~~a---g~~-~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~--- 288 (425)
T PRK00077 221 LILEAIEKA---GYK-PGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDK-----YPIVSIEDGLDE--- 288 (425)
T ss_pred HHHHHHHHh---cCC-CCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhh-----CCcEEEEcCCCC---
Confidence 345555554 541 12567777666211 12334444444444443 468888888432
Q ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHcC--CeeEEEecC--CCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHH
Q 025159 135 SYEFPIKKEDFLPMDFKSVWEAMEECQNLG--YTKAIGVSN--FSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLR 207 (257)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~ 207 (257)
+-|+.+.+|.+.- ++.-+|=-. .+++.+.++++....+ ++|+..+-... -.++.
T Consensus 289 -----------------~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d--~v~ik~~~~GGitea~~ia 349 (425)
T PRK00077 289 -----------------NDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAAN--SILIKVNQIGTLTETLDAI 349 (425)
T ss_pred -----------------ccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCC--EEEeCccccCCHHHHHHHH
Confidence 2356666666653 565444332 3689999998876655 66666654432 36789
Q ss_pred HHHHHCCceEEE
Q 025159 208 EFCKAKDIQLAA 219 (257)
Q Consensus 208 ~~~~~~gi~v~~ 219 (257)
..|+++|+.++.
T Consensus 350 ~lA~~~gi~~~v 361 (425)
T PRK00077 350 ELAKRAGYTAVV 361 (425)
T ss_pred HHHHHcCCeEEE
Confidence 999999998665
No 318
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.97 E-value=4.7e+02 Score=22.88 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCC
Q 025159 153 VWEAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGA 225 (257)
Q Consensus 153 ~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~ 225 (257)
.++.+.+|++.-.+ -..|=|-++...+..+++....+ ++|+...-..--..+.+.|+.+||.++..+.+.+
T Consensus 205 ~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d--~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~es 276 (320)
T PRK02714 205 QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG--IFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVFET 276 (320)
T ss_pred cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC--EEEEcchhcCCHHHHHHHHHHhCCCEEEEechhh
Confidence 35677777765443 46788888999998888865444 6666665444345788999999999998765543
No 319
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.65 E-value=2.8e+02 Score=26.55 Aligned_cols=71 Identities=14% Similarity=-0.024 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHH-cCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCC
Q 025159 150 FKSVWEAMEECQN-LGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 150 ~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl 223 (257)
.-+++++|...++ .++|.-||..+.. ..+..+.+..+++ +.|..|+.-..-...+..+++.|+.++.-..+
T Consensus 93 ~~Dil~al~~a~~~~~~iavv~~~~~~-~~~~~~~~~l~~~--i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~ 164 (538)
T PRK15424 93 GFDVMQALARARKLTSSIGVVTYQETI-PALVAFQKTFNLR--IEQRSYVTEEDARGQINELKANGIEAVVGAGL 164 (538)
T ss_pred HhHHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEEcCch
Confidence 4567888877776 5677778887765 3455555555555 66666655444478899999999999875433
No 320
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.60 E-value=4.8e+02 Score=22.84 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHHHcCC-e-eEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCC
Q 025159 155 EAMEECQNLGY-T-KAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 155 ~~l~~l~~~G~-i-r~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
+.|..+++.|. + -.||+-+++.+.++..+...- .+ ..-.+.++.++++||.+.++--++
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~-t~----------~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIREKSINKGS-TF----------EDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC-CH----------HHHHHHHHHHHHcCCcEEEEEEec
Confidence 55666778887 3 679999999888864333211 10 011357777888888877665553
No 321
>PRK09061 D-glutamate deacylase; Validated
Probab=24.59 E-value=6e+02 Score=23.96 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCceeeCCCCC--C-ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCC-ChhhHHHHHHHHHHhhCC
Q 025159 42 TKLAILEAMKLGYRHFDTATLY--Q-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDA-HRELVVPALQKSLENLQL 117 (257)
Q Consensus 42 ~~~~l~~Al~~Gi~~~DtA~~Y--g-~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~-~~~~i~~~l~~sL~~Lg~ 117 (257)
..+.++.|++.|+..|-+...| + +...+-..++.. .+-+..|...+..... ++.....++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 5677888999999999775555 2 455566666655 4556777777654332 122233344444443332
Q ss_pred CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCC
Q 025159 118 EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFS 175 (257)
Q Consensus 118 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 175 (257)
.-.-+.+.|--.... ....+.++.+++.+++|.--..-++-|.
T Consensus 244 ~G~rv~IsHlss~g~---------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGAHMHICHVNSTSL---------------RDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCCCEEEEeeccCCc---------------ccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 223466667642211 1256788889999999854444554444
No 322
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.44 E-value=4.8e+02 Score=22.80 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENL 115 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~L 115 (257)
.+.++..++++.+.+.|++.|..+..-. -..-+-+.++...+.. .-.++.|+|.... +.+ .-+.|.+.
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~---gi~~v~itTNG~l-------l~~-~~~~L~~~ 111 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP---GIEDIALTTNGLL-------LAR-HAKDLKEA 111 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcC---CCCeEEEEeCchh-------HHH-HHHHHHHc
Confidence 6788999999999999998776543111 1112334444331101 1226777775321 122 23446666
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCcccCCC--CccHHHHHHHHHHHHHcCC
Q 025159 116 QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFL--PMDFKSVWEAMEECQNLGY 165 (257)
Q Consensus 116 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~G~ 165 (257)
|++++- +-++.++...- .... ....+.++++++.+++.|.
T Consensus 112 gl~~v~-ISld~~~~~~~---------~~i~~~~~~~~~vl~~i~~l~~~G~ 153 (334)
T TIGR02666 112 GLKRVN-VSLDSLDPERF---------AKITRRGGRLEQVLAGIDAALAAGL 153 (334)
T ss_pred CCCeEE-EecccCCHHHh---------heeCCCCCCHHHHHHHHHHHHHcCC
Confidence 765432 22343322110 0110 1247888999999998875
No 323
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=24.41 E-value=2.4e+02 Score=21.06 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEe
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGV 171 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 171 (257)
+..+.+.|+.+....+|.+++...+...+ +..+....++.|.+.| |+-+-+
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R---------------~~~~~~~~~~~l~~~g-i~l~~~ 101 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGR---------------SLRDLLALLELLEKKG-VRLVSV 101 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhC---------------cHHHHHHHHHHHHHCC-CEEEEC
Confidence 56677777777666789999998876543 3567778888888877 555544
No 324
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=24.38 E-value=5.8e+02 Score=23.71 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCC--CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCC
Q 025159 61 TLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWCS--DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEF 138 (257)
Q Consensus 61 ~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~--~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~ 138 (257)
-.||.+..+-++|++.++.. +.+-++|.|-+-+. ..+-+.+.+.++.-..+ ..-+.++.++.|.....
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~g~----- 141 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFKGA----- 141 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCCCc-----
Confidence 35788899999998876553 23556666665322 11223333333222111 11357888888754211
Q ss_pred CCcccCCCCccHHHHHHHHHH-HH--------HcCCeeEEEecC---CCHHHHHHHHHhCCCCC
Q 025159 139 PIKKEDFLPMDFKSVWEAMEE-CQ--------NLGYTKAIGVSN---FSCKKLGDILATAKIPP 190 (257)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~-l~--------~~G~ir~iGvs~---~~~~~l~~~~~~~~~~p 190 (257)
.....+.+++++.+ +. +.++|--||-++ -+.+++.++++..++.+
T Consensus 142 -------~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 142 -------LEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred -------HHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 01123334444432 21 345688887544 36777888888888775
No 325
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=24.37 E-value=4.7e+02 Score=22.69 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCceeeCCCCCCC---hHHHHHHHHHHHh--CCCCCCCC-cEEEEeccCCCCCChhhHHHHHHHHHHh
Q 025159 41 TTKLAILEAMKLGYRHFDTATLYQT---EQPLGDAIAEALS--TGIIKSRD-ELFIASKLWCSDAHRELVVPALQKSLEN 114 (257)
Q Consensus 41 ~~~~~l~~Al~~Gi~~~DtA~~Yg~---e~~lg~~l~~~~~--~~~~~~R~-~l~i~tK~~~~~~~~~~i~~~l~~sL~~ 114 (257)
...+.++++.+ |.........|+. ...+-+++.+++. .+.....+ .++++.- .......+-..++
T Consensus 19 ~~~~~~~~~~~-~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G-------~~~~~~~~~~~~~- 89 (363)
T PF00155_consen 19 PPPAAIKAAIR-GAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSG-------AQAALFLLLRLLK- 89 (363)
T ss_dssp HHHHHHHHHHH-HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESH-------HHHHHHHHHHHHH-
T ss_pred chHHHHHHHHH-HhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecc-------cccchhhhhhccc-
Confidence 34445555444 3333333345652 3445555554432 01111345 5555432 1233333333332
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec-----CCCHHHHHHHHHhC---
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS-----NFSCKKLGDILATA--- 186 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-----~~~~~~l~~~~~~~--- 186 (257)
.+.-|.+++..|... ...+.++.+ ...+..+-+. ..+.+.+++.++..
T Consensus 90 --~~~~~~vlv~~P~y~--------------------~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 90 --INPGDTVLVPDPCYP--------------------SYIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp --SSTTSEEEEEESSST--------------------HHHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred --ccccccceecCCccc--------------------ccccccccc--Cceeeecccccccccccccccccccccccccc
Confidence 344577888888542 222333322 2225555544 66889999988875
Q ss_pred --CCCCceeccccCCCCC---c---HHHHHHHHHCCceEEEecCCC
Q 025159 187 --KIPPAANQVEMNPLWQ---Q---NKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 187 --~~~p~~~q~~~~~~~~---~---~~~~~~~~~~gi~v~~~~pl~ 224 (257)
+.+..+.-.+.||... . .+++++|+++|+-++.=...+
T Consensus 146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred ccccceeeecccccccccccccccccchhhhhcccccceeeeecee
Confidence 2234445455665543 1 567888999999998766554
No 326
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.33 E-value=4.7e+02 Score=22.67 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=47.0
Q ss_pred CcEEEEeccCCCC-----CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHH
Q 025159 86 DELFIASKLWCSD-----AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEEC 160 (257)
Q Consensus 86 ~~l~i~tK~~~~~-----~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 160 (257)
+++.|..|+...+ .+.+.. ..+-+.|+..|+|+| -+|......+.....+ ........++.+..+
T Consensus 207 ~d~~i~vris~~~~~~~g~~~~e~-~~la~~l~~~G~d~i---~vs~g~~~~~~~~~~~------~~~~~~~~~~~~~~i 276 (327)
T cd02803 207 PDFPVGVRLSADDFVPGGLTLEEA-IEIAKALEEAGVDAL---HVSGGSYESPPPIIPP------PYVPEGYFLELAEKI 276 (327)
T ss_pred CCceEEEEechhccCCCCCCHHHH-HHHHHHHHHcCCCEE---EeCCCCCcccccccCC------CCCCcchhHHHHHHH
Confidence 5678899986543 223332 233445667786554 4454432211000000 000011233444555
Q ss_pred HHcCCeeEEEecCCC-HHHHHHHHHhCCCC
Q 025159 161 QNLGYTKAIGVSNFS-CKKLGDILATAKIP 189 (257)
Q Consensus 161 ~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~ 189 (257)
++.=.+--++..+.. ++.++++++....+
T Consensus 277 r~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD 306 (327)
T cd02803 277 KKAVKIPVIAVGGIRDPEVAEEILAEGKAD 306 (327)
T ss_pred HHHCCCCEEEeCCCCCHHHHHHHHHCCCCC
Confidence 554456667777764 88888888865444
No 327
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=24.32 E-value=87 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEE
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAA 219 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~ 219 (257)
..+...+..|++.+.++-+|...........+.+..-.-|. . .-..-.-++++|++++|.++.
T Consensus 9 s~~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~~eP~-~-----~~~yv~~~l~~C~~~~Idv~~ 71 (329)
T PF15632_consen 9 SSQRDIIRSLRANRDFTIIASHRDPRAPILYAADEAYLEPA-D-----GEEYVDWCLDFCKEHGIDVFV 71 (329)
T ss_pred ccHHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceeeecCC-C-----HHHHHHHHHHHHHHhCCeEEE
Confidence 35667777777778888888776665554444443322222 1 111115689999999999875
No 328
>PRK10206 putative oxidoreductase; Provisional
Probab=24.27 E-value=1.6e+02 Score=26.17 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=8.6
Q ss_pred HHHHHHHHHCCceEEE
Q 025159 204 NKLREFCKAKDIQLAA 219 (257)
Q Consensus 204 ~~~~~~~~~~gi~v~~ 219 (257)
.++++.|+++|+.++.
T Consensus 105 ~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 105 KELFALAKSKGLTVTP 120 (344)
T ss_pred HHHHHHHHHhCCEEEE
Confidence 4555555555555443
No 329
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.26 E-value=5.3e+02 Score=23.19 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEecCCC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
..+..+..+...+.++..-+...+.+.++++++. +.+..++..+-|+... -..+.+.|+++|+.++.=...+
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 102 GTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred HHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 3444454555555555454555677777776642 3443444445555433 2688999999999887766554
No 330
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.25 E-value=2.8e+02 Score=20.11 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=29.6
Q ss_pred ecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 171 VSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
++..+.+.++.++... ....++=.--+......++.+.++++||++..+..
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 4455677777766542 22222222222222346788999999999988753
No 331
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=24.23 E-value=4.5e+02 Score=22.42 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=60.9
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCe-eEEEecCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYT-KAIGVSNF 174 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvs~~ 174 (257)
..+.+.+++.++..++. | +|-+++-...-+. ..++.+|-.+-++..++ .|++ -.+|++..
T Consensus 18 ~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~-------------~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEF-------------YSLTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp SB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTG-------------GGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred CcCHHHHHHHHHHHHHc-C---CCEEEECCCCccc-------------ccCCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 34667777777777753 5 6777776543211 12334444443433333 3554 56799998
Q ss_pred CHHHHHHHHH---hCCCCCceeccccCCCCCcHHHHHHH----HHCCceEEEec
Q 025159 175 SCKKLGDILA---TAKIPPAANQVEMNPLWQQNKLREFC----KAKDIQLAAYA 221 (257)
Q Consensus 175 ~~~~l~~~~~---~~~~~p~~~q~~~~~~~~~~~~~~~~----~~~gi~v~~~~ 221 (257)
+.++..++.+ ..+.+..++.-+|.....++++++++ ..-+++++.|.
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 8777555544 34466555555655444455555554 45589999998
No 332
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=24.20 E-value=5.3e+02 Score=24.35 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=61.2
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEeccCC-----CCCChhhHHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKLWC-----SDAHRELVVPALQKS 111 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~-----~~~~~~~i~~~l~~s 111 (257)
.+.+...+-++.-+.+|++||=.. |..-+.+-+.-. +..+|+.+++-....
T Consensus 215 R~~e~Vv~EVkaLY~~GvrhFRlG------------------------RQ~difsy~~~~~g~e~P~PnPealekL~~Gi 270 (560)
T COG1031 215 RPPEDVVEEVKALYRAGVRHFRLG------------------------RQADIFSYGADDNGGEVPRPNPEALEKLFRGI 270 (560)
T ss_pred CCHHHHHHHHHHHHHhccceeeec------------------------cccceeeecccccCCCCCCCCHHHHHHHHHHH
Confidence 688888999999999999999422 332233333211 122455554443333
Q ss_pred HHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 112 LENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 112 L~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
.. -..++-.||--+.. | .--.++. ..-.++.+.+.+.-.-|-|-+.|+-++|+..+
T Consensus 271 r~----~AP~l~tLHiDNaN-P------~tIa~yp-~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~ 326 (560)
T COG1031 271 RN----VAPNLKTLHIDNAN-P------ATIARYP-EESREIAKVIVKYGTPGNVAAFGLESADPRVA 326 (560)
T ss_pred Hh----hCCCCeeeeecCCC-c------hhhhcCh-HHHHHHHHHHHhhCCCCceeeeeccccCHHHH
Confidence 32 23455556632211 1 0001111 12456788888888899999999998886553
No 333
>PRK09875 putative hydrolase; Provisional
Probab=24.14 E-value=4.8e+02 Score=22.70 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=67.5
Q ss_pred CcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC-----------ChHHHHHHHHHHHhCCCCCC----CC
Q 025159 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ-----------TEQPLGDAIAEALSTGIIKS----RD 86 (257)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----------~e~~lg~~l~~~~~~~~~~~----R~ 86 (257)
+.++.+|+| .....+-+.+.+.|+|.+=++..|- +.+.+.+.+-+-+.+++ . |.
T Consensus 52 Vd~T~~g~G---------Rd~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi--~gt~ika 120 (292)
T PRK09875 52 IEMTNRYMG---------RNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGI--DGTELKA 120 (292)
T ss_pred EecCCCccC---------cCHHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhh--ccCCCcc
Confidence 556667766 2345666667789999998888874 33333333333334444 3 44
Q ss_pred cEEEEeccCCCC--CCh---hhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 87 ELFIASKLWCSD--AHR---ELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 87 ~l~i~tK~~~~~--~~~---~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.+ ..|+.... .++ +-++.+.+.+ .+.|. -+.+|-+.. ...++.++-|+
T Consensus 121 Gv--IGeiG~~~~~it~~E~kvl~Aaa~a~-~~TG~----pi~~Ht~~~--------------------~~g~e~l~il~ 173 (292)
T PRK09875 121 GI--IAEIGSSEGKITPLEEKVFIAAALAH-NQTGR----PISTHTSFS--------------------TMGLEQLALLQ 173 (292)
T ss_pred cE--EEEEecCCCCCCHHHHHHHHHHHHHH-HHHCC----cEEEcCCCc--------------------cchHHHHHHHH
Confidence 44 44553322 222 2223333332 33443 366785421 13344566777
Q ss_pred HcCC-eeEEEec----CCCHHHHHHHHHhCC
Q 025159 162 NLGY-TKAIGVS----NFSCKKLGDILATAK 187 (257)
Q Consensus 162 ~~G~-ir~iGvs----~~~~~~l~~~~~~~~ 187 (257)
++|. ...+=++ +.+.+.+.++++..-
T Consensus 174 e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~ 204 (292)
T PRK09875 174 AHGVDLSRVTVGHCDLKDNLDNILKMIDLGA 204 (292)
T ss_pred HcCcCcceEEEeCCCCCCCHHHHHHHHHcCC
Confidence 7776 1222222 458888888887553
No 334
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.07 E-value=2.9e+02 Score=20.06 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred ecCCCHHHHHHHHHhCCCCCceecc--ccCCCCCcHHHHHHHHHCCceEEEecC
Q 025159 171 VSNFSCKKLGDILATAKIPPAANQV--EMNPLWQQNKLREFCKAKDIQLAAYAP 222 (257)
Q Consensus 171 vs~~~~~~l~~~~~~~~~~p~~~q~--~~~~~~~~~~~~~~~~~~gi~v~~~~p 222 (257)
.+..+++.+..++... +|.++=+ .-+......++.++++++||++..+..
T Consensus 36 ~~~l~~~~l~~~~~~~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAED--RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhC--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 4556677777776653 3433322 222222346788999999999987753
No 335
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.04 E-value=5.1e+02 Score=22.98 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHc-CC---eeEEEec--CCCHHHHHHHHHhCC-CCCceeccccCCCCCc---------HHHHHHHHH
Q 025159 149 DFKSVWEAMEECQNL-GY---TKAIGVS--NFSCKKLGDILATAK-IPPAANQVEMNPLWQQ---------NKLREFCKA 212 (257)
Q Consensus 149 ~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~p~~~q~~~~~~~~~---------~~~~~~~~~ 212 (257)
+++++++++.++.+. +. ++++=+. |.+.+.++++.+... ....++-++||+.... ....+..++
T Consensus 233 ~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~ 312 (343)
T PRK14469 233 SIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLK 312 (343)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHH
Confidence 478888888877664 32 3454444 555667777766543 4445777788875421 345677788
Q ss_pred CCceEEEecCCC
Q 025159 213 KDIQLAAYAPLG 224 (257)
Q Consensus 213 ~gi~v~~~~pl~ 224 (257)
+|+.+......+
T Consensus 313 ~gi~vtvr~~~g 324 (343)
T PRK14469 313 NGIEAEIRREKG 324 (343)
T ss_pred CCCeEEEeCCCC
Confidence 899998876654
No 336
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=40 Score=27.80 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=12.1
Q ss_pred cCCceeeCCCCCC
Q 025159 52 LGYRHFDTATLYQ 64 (257)
Q Consensus 52 ~Gi~~~DtA~~Yg 64 (257)
.|.++|+|++.||
T Consensus 199 ~G~ryF~c~p~yG 211 (234)
T KOG3206|consen 199 NGKRYFECAPKYG 211 (234)
T ss_pred cceEeeecCCccC
Confidence 5899999999997
No 337
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=23.69 E-value=5.5e+02 Score=23.20 Aligned_cols=34 Identities=3% Similarity=-0.056 Sum_probs=22.0
Q ss_pred HHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCC
Q 025159 156 AMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIP 189 (257)
Q Consensus 156 ~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 189 (257)
....+++.=.+--|++.++ +++..+++++....+
T Consensus 296 ~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D 330 (382)
T cd02931 296 YCKALKEVVDVPVIMAGRMEDPELASEAINEGIAD 330 (382)
T ss_pred HHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 3344444334566777777 788899988876544
No 338
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=23.66 E-value=1.3e+02 Score=27.62 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhC---CCCCceeccccCCCCCcHHHHHHHHH--CCceEEEecCCCCC
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATA---KIPPAANQVEMNPLWQQNKLREFCKA--KDIQLAAYAPLGAR 226 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~p~~~q~~~~~~~~~~~~~~~~~~--~gi~v~~~~pl~~~ 226 (257)
-+++++.+..++++ ++.+.+++.+-+.++.. ++++..+....+ .+.++.+++ +=.++++. +
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-----~~~~~~~~~~~R~~giVSR----G- 187 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-----RETLERLKKSGRIMGIVSR----G- 187 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-----HHHHHHHHhcCCccCeecC----C-
Confidence 35667777755554 77888888876665543 477666644333 467777775 44666655 2
Q ss_pred CCCC-------CCCCcc--ChHHHHHHHHHhCCCcc
Q 025159 227 GTIW-------GSNRVM--ECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 227 G~l~-------~~~~~~--~~~~~~~ia~~~~~s~~ 253 (257)
|.+. ++.+++ .-+.+-+|+++|++|.+
T Consensus 188 Gs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 188 GSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 3321 233333 34899999999998754
No 339
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=23.62 E-value=86 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLY 63 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Y 63 (257)
.+++++.++++.|+++|..-.+-+..|
T Consensus 80 ~s~eevd~~v~ka~eaGGk~~~~~~d~ 106 (133)
T COG3607 80 GSREEVDELVDKALEAGGKPANEPQDE 106 (133)
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 367999999999999999876555544
No 340
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.56 E-value=1.2e+02 Score=26.04 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 204 NKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 204 ~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
..+.+.|+++|++++++.|.+. .. ..... ......++|.++|-.
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~-~~-~~~~~--~ia~aaRiaaELGAD 173 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGK-DM-VRDAR--YFSLATRIAAEMGAQ 173 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCC-Cc-CchHH--HHHHHHHHHHHHcCC
Confidence 3578999999999999988864 32 11111 235556777777643
No 341
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=23.52 E-value=3.9e+02 Score=22.19 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCeeEEEecC---CC-----HHHHHHHHHhCCCCCceeccccC-CCCCc-----------HHHHHHHHHCC
Q 025159 155 EAMEECQNLGYTKAIGVSN---FS-----CKKLGDILATAKIPPAANQVEMN-PLWQQ-----------NKLREFCKAKD 214 (257)
Q Consensus 155 ~~l~~l~~~G~ir~iGvs~---~~-----~~~l~~~~~~~~~~p~~~q~~~~-~~~~~-----------~~~~~~~~~~g 214 (257)
+.++...+.| ...|.+.. +. +..+.++++..++.+...+...+ ..... ...++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 4556677777 55676663 22 56778888887777655444433 23332 23899999999
Q ss_pred ceEEEecCCCCCCCCCCCCC-------ccChHHHHHHHHHhCCCc
Q 025159 215 IQLAAYAPLGARGTIWGSNR-------VMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 215 i~v~~~~pl~~~G~l~~~~~-------~~~~~~~~~ia~~~~~s~ 252 (257)
+.++...+-...+.-....+ ......+.++|+++++..
T Consensus 98 ~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l 142 (274)
T COG1082 98 AKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGL 142 (274)
T ss_pred CCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCce
Confidence 88766544322121111001 112366777777776543
No 342
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=23.44 E-value=1.7e+02 Score=25.95 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecC
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN 173 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 173 (257)
..++.||+| +|=+++..|+. .+++++..++|.++|.+--|=+-+
T Consensus 96 ~~a~~lGvd-l~rllv~~P~~-------------------~E~al~~~e~lirsg~~~lVVvDS 139 (322)
T PF00154_consen 96 EYAESLGVD-LDRLLVVQPDT-------------------GEQALWIAEQLIRSGAVDLVVVDS 139 (322)
T ss_dssp HHHHHTT---GGGEEEEE-SS-------------------HHHHHHHHHHHHHTTSESEEEEE-
T ss_pred hHHHhcCcc-ccceEEecCCc-------------------HHHHHHHHHHHhhcccccEEEEec
Confidence 456778998 55566666743 578889999999999987664433
No 343
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.25 E-value=5.1e+02 Score=23.07 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCceeeCCCCC---------C---ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 025159 43 KLAILEAMKLGYRHFDTATLY---------Q---TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQK 110 (257)
Q Consensus 43 ~~~l~~Al~~Gi~~~DtA~~Y---------g---~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~ 110 (257)
.+.++...+.|+|.+...-.- | +..-+-++++.+.+.++ +.+-+--=++.+..+.+.+.+.++.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~----~~v~~dli~GlPgqt~e~~~~~l~~ 174 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGF----NNINVDLMFGLPNQTLEDWKETLEK 174 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CcEEEEeecCCCCCCHHHHHHHHHH
Confidence 456666677799877332211 1 23333345554422232 1222222223345577888888887
Q ss_pred HHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCcc---HHHHH-HHHHHHHHcCCeeEEEecCCCH
Q 025159 111 SLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD---FKSVW-EAMEECQNLGYTKAIGVSNFSC 176 (257)
Q Consensus 111 sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 176 (257)
.. +++.+.+.+|.+.- .+.++- ............. ....+ .+.+.|.+.|..+ +++|||..
T Consensus 175 ~~-~l~~~~is~y~l~~-~pgT~l--~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~-ye~~~fa~ 239 (374)
T PRK05799 175 VV-ELNPEHISCYSLII-EEGTPF--YNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQ-YEISNFAK 239 (374)
T ss_pred HH-hcCCCEEEEeccEe-cCCCHH--HHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcE-EeeeeeEC
Confidence 76 48988888877652 221210 0000000000011 11222 3446678889864 89999974
No 344
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.23 E-value=5e+02 Score=22.58 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=72.5
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCe-eEEEecCCC
Q 025159 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYT-KAIGVSNFS 175 (257)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvs~~~ 175 (257)
.+.+.+++.++..++ -| +|-+++-.-.-+. ...+.+|-.+.++..++ .|++ --.|++..+
T Consensus 22 vD~~a~~~lv~~li~-~G---v~gi~~~GttGE~-------------~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~ 84 (299)
T COG0329 22 VDEEALRRLVEFLIA-AG---VDGLVVLGTTGES-------------PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS 84 (299)
T ss_pred cCHHHHHHHHHHHHH-cC---CCEEEECCCCccc-------------hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc
Confidence 455666666665554 34 5766655433222 24567777777777777 5666 456888887
Q ss_pred HHHHHHHHHh---CCCCCceeccccCCCCCcHH----HHHHHHHCCceEEEec-CCCCCCCCCCCCCccChHHHHHHHH
Q 025159 176 CKKLGDILAT---AKIPPAANQVEMNPLWQQNK----LREFCKAKDIQLAAYA-PLGARGTIWGSNRVMECEVLKEIAE 246 (257)
Q Consensus 176 ~~~l~~~~~~---~~~~p~~~q~~~~~~~~~~~----~~~~~~~~gi~v~~~~-pl~~~G~l~~~~~~~~~~~~~~ia~ 246 (257)
.....++.+. .+.+-.++.-+|..-..+.+ ....|..-+++++.|+ |... |. -+..+.+.++|+
T Consensus 85 t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~t-g~------~l~~e~i~~la~ 156 (299)
T COG0329 85 TAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRT-GV------DLSPETIARLAE 156 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcccc-CC------CCCHHHHHHHhc
Confidence 6665444443 34554455455544333433 3455666799999999 5544 43 234455566655
No 345
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=23.13 E-value=3.2e+02 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhC
Q 025159 157 MEECQNLGYTKAIGVSNFSCKKLGDILATA 186 (257)
Q Consensus 157 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 186 (257)
++.+++.|.-+.+=+|+|+++.+..+....
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~ 185 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLKQ 185 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhhC
Confidence 334455566678999999999988776654
No 346
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=23.07 E-value=5.2e+02 Score=22.74 Aligned_cols=96 Identities=8% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCeeEEEecC---------CCHHHHHHHHHhCCCCCceeccccCCCCCc--HHHHHHHHHCCceEEEec
Q 025159 153 VWEAMEECQNLGYTKAIGVSN---------FSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 153 ~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~ 221 (257)
.++-++.+..-..++.+|+.+ .+.+.++.+.+...-...+..++-..-..+ .+.++.+++.|+.+..-+
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qt 240 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQS 240 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecc
Q ss_pred CCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 222 PLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 222 pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
++.. |.. .+...-..+-+.+.+.|+.|
T Consensus 241 vllk-giN---Dn~~~l~~L~~~l~~~gv~p 267 (321)
T TIGR03821 241 VLLR-GVN---DNADTLAALSERLFDAGVLP 267 (321)
T ss_pred eeeC-CCC---CCHHHHHHHHHHHHHcCCee
No 347
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=23.01 E-value=4.9e+02 Score=22.37 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=66.9
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCe-eEEEecCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYT-KAIGVSNF 174 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~i-r~iGvs~~ 174 (257)
..+.+.+++.++..++ -| +|-+++-.-.-+.. .++.+|-.+.++..++ .|++ --+|++.
T Consensus 17 ~iD~~~l~~l~~~l~~-~G---v~gi~v~GstGE~~-------------~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~- 78 (289)
T cd00951 17 SFDEDAYRAHVEWLLS-YG---AAALFAAGGTGEFF-------------SLTPDEYAQVVRAAVEETAGRVPVLAGAGY- 78 (289)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcCCcCcc-------------cCCHHHHHHHHHHHHHHhCCCCCEEEecCC-
Confidence 4567888888888776 45 56666654322211 3345554444444444 3443 3457765
Q ss_pred CHHHHHHHHH---hCCCCCceeccccCCCCCcHHHHH----HHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHH
Q 025159 175 SCKKLGDILA---TAKIPPAANQVEMNPLWQQNKLRE----FCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEA 247 (257)
Q Consensus 175 ~~~~l~~~~~---~~~~~p~~~q~~~~~~~~~~~~~~----~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~ 247 (257)
+..+..++.+ ..+.+-.++.-+|.....+.++++ .|+.-+++++.|+ . . |. .+..+.+.+++++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn-~-~-g~------~l~~~~l~~L~~~ 149 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN-R-A-NA------VLTADSLARLAER 149 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe-C-C-CC------CCCHHHHHHHHhc
Confidence 5555444333 334555555555443223344444 4455689999998 2 2 32 2345677777753
Q ss_pred h
Q 025159 248 K 248 (257)
Q Consensus 248 ~ 248 (257)
+
T Consensus 150 ~ 150 (289)
T cd00951 150 C 150 (289)
T ss_pred C
Confidence 4
No 348
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.01 E-value=5.5e+02 Score=22.96 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHHHC--CceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 204 NKLREFCKAK--DIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 204 ~~~~~~~~~~--gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
..+.+++++. .|.++.|+|+++ .-+.+++......+.++.+++|++.
T Consensus 269 ~~L~~ll~~l~~~vnlIPyn~~~~--~~~~~ps~e~i~~f~~~L~~~gi~v 317 (349)
T PRK14463 269 KRLVRLLSDIPSKVNLIPFNEHEG--CDFRSPTQEAIDRFHKYLLDKHVTV 317 (349)
T ss_pred HHHHHHHhccCceEEEEecCCCCC--CCCCCCCHHHHHHHHHHHHHCCceE
Confidence 3566666654 467788888753 2112222223455666777777653
No 349
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=22.98 E-value=5.5e+02 Score=22.94 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCcc---HHHHHHHH-HHHHHcCCeeEEE
Q 025159 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMD---FKSVWEAM-EECQNLGYTKAIG 170 (257)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~~l~~~G~ir~iG 170 (257)
+.+..+.+.+++.++..+ +++.+++.+|.+.- ...++-... .........+ ..+.+... +.|.+.|.. .++
T Consensus 168 GlPgqt~~~~~~tl~~~~-~l~~~~i~~y~l~~-~~gT~l~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye 242 (375)
T PRK05628 168 GTPGESDDDWRASLDAAL-EAGVDHVSAYALIV-EDGTALARR--VRRGELPAPDDDVLADRYELADARLSAAGFD-WYE 242 (375)
T ss_pred cCCCCCHHHHHHHHHHHH-hcCCCEEEeeeeec-CCCChHHHH--hhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eee
Confidence 335567788888888665 49999998888763 222110000 0000011111 12233333 456778885 589
Q ss_pred ecCCCH
Q 025159 171 VSNFSC 176 (257)
Q Consensus 171 vs~~~~ 176 (257)
+|||..
T Consensus 243 ~s~fa~ 248 (375)
T PRK05628 243 VSNWAR 248 (375)
T ss_pred eccccC
Confidence 999975
No 350
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.95 E-value=39 Score=21.11 Aligned_cols=14 Identities=64% Similarity=0.665 Sum_probs=8.0
Q ss_pred HHHHHHhCCCcccc
Q 025159 242 KEIAEAKGKTVAQV 255 (257)
Q Consensus 242 ~~ia~~~~~s~~qv 255 (257)
.++|+..|++++||
T Consensus 32 ~~La~~~gi~~~qV 45 (50)
T PF06971_consen 32 QELAEALGITPAQV 45 (50)
T ss_dssp HHHHHHHTS-HHHH
T ss_pred HHHHHHHCCCHHHh
Confidence 34556667777665
No 351
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=22.93 E-value=2e+02 Score=26.45 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCe-eEEEecCCCHHHHHHHHHhCCC-------CCceeccccCCCC---Cc----HHHHHHHHHCCceE
Q 025159 154 WEAMEECQNLGYT-KAIGVSNFSCKKLGDILATAKI-------PPAANQVEMNPLW---QQ----NKLREFCKAKDIQL 217 (257)
Q Consensus 154 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~-------~p~~~q~~~~~~~---~~----~~~~~~~~~~gi~v 217 (257)
++.|.+..++|.- .-.+||+-++..++.++..+.- --..||++-.-.. .+ .-+.+.|++.|.+.
T Consensus 4 l~~lv~~~k~G~~~gI~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~ 82 (424)
T PF08013_consen 4 LKELVKRHKAGEPVGIYSVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFPR 82 (424)
T ss_dssp -HHHHHHHHTT--B-EEEE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--G
T ss_pred HHHHHHHHhCCCCCceEEecCCCHHHHHHHHHHHHhcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCch
Confidence 4566667777764 4458999999999999998762 1234555422111 11 44666677766543
No 352
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.90 E-value=1.4e+02 Score=21.32 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCcEEEEec
Q 025159 63 YQTEQPLGDAIAEALSTGIIKSRDELFIASK 93 (257)
Q Consensus 63 Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK 93 (257)
|-++.-+-.++.++.++|. ..++++|.+|
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEc
Confidence 4467777778888888888 8999999998
No 353
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.90 E-value=1.5e+02 Score=30.71 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=37.3
Q ss_pred cccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHH
Q 025159 119 YIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDI 182 (257)
Q Consensus 119 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 182 (257)
.+|+++|.-|....+ ......+++.|..+.+.|+ .|||.+|.++....+
T Consensus 978 ~~~~l~lDEp~~~LD-------------~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLD-------------EDSLDRAIGILDAIREGSK--MIGIISHVPEFRERI 1026 (1042)
T ss_pred CCCeEEecCCCCCCC-------------HHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhh
Confidence 589999999865332 2335678899999988776 499999998876665
No 354
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.63 E-value=60 Score=33.68 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCeeEE-E----ecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEec
Q 025159 150 FKSVWEAMEECQNLGYTKAI-G----VSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~i-G----vs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~ 221 (257)
-..++++|.+++++|+|..| | +...+ +..+-++.. .+-+++|...+. ...++.||++++++..++-
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id-~kYDvAIsT-----ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi 672 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAID-EKYDVAIST-----ACARLDYIVVDTIETAQECINFLKKNNLGRATFI 672 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccc-hHHHHHHHH-----hccccceEEeccHHHHHHHHHHHHHcCCCceeEE
Confidence 35799999999999998644 2 11122 222333332 244555555544 3689999999999999998
Q ss_pred CCCC
Q 025159 222 PLGA 225 (257)
Q Consensus 222 pl~~ 225 (257)
+|..
T Consensus 673 ~LDk 676 (1293)
T KOG0996|consen 673 ILDK 676 (1293)
T ss_pred ehHh
Confidence 8843
No 355
>PRK03995 hypothetical protein; Provisional
Probab=22.61 E-value=4.1e+02 Score=22.92 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=47.7
Q ss_pred CcCCccceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC----ChHHHHHHHHHHHhCCCCCCCC-cEEEEeccCC
Q 025159 22 RRMPVLGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ----TEQPLGDAIAEALSTGIIKSRD-ELFIASKLWC 96 (257)
Q Consensus 22 ~~vs~lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg----~e~~lg~~l~~~~~~~~~~~R~-~l~i~tK~~~ 96 (257)
-..+.||||...+ +.+.-+.|++.++.+=-..+.|. ++..+-.++.+. . .+- -++|--|.
T Consensus 180 ~~~~~iGiGGgHY-------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks----~--~~~~~~~id~K~-- 244 (267)
T PRK03995 180 KFKPAIGIGGGHY-------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKS----T--PEIDRIVIDWKG-- 244 (267)
T ss_pred CCCEEEEECCCCc-------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhc----c--CCCCEEEEecCC--
Confidence 3467788887775 34555666777666555566665 344444444432 1 222 33343442
Q ss_pred CCCChhhHHHHHHHHHHhhCCCc
Q 025159 97 SDAHRELVVPALQKSLENLQLEY 119 (257)
Q Consensus 97 ~~~~~~~i~~~l~~sL~~Lg~d~ 119 (257)
.+...++.+++.|+++|+.-
T Consensus 245 ---~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 245 ---VKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred ---CCHHHHHHHHHHHHHCCCeE
Confidence 23577888889999888753
No 356
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.57 E-value=1.9e+02 Score=21.19 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEec
Q 025159 104 VVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVS 172 (257)
Q Consensus 104 i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 172 (257)
-+..+++.|+.+.....|.+++..++...+ ...+....++.|...| |+-+-++
T Consensus 50 ~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R---------------~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 50 DRPGLQRLLADVKAGKIDVVLVEKLDRLSR---------------NLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecchhhC---------------CHHHHHHHHHHHHHCC-CEEEEec
Confidence 466777777777767899999999876544 3456777777777665 5545443
No 357
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.53 E-value=3.5e+02 Score=20.47 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=42.8
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC--CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL--EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~--d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
.|=.+.|+-|.......++.+++.++++.+.... .-.|++++-.+.... .+..++.+.|..|.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~---------------~~~~~l~~~l~~ll 110 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGE---------------LENPELHQQFGKLW 110 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCccc---------------CCHHHHHHHHHHHH
Confidence 4666777777555566788899999988886532 357999998875421 23556666666654
Q ss_pred H
Q 025159 162 N 162 (257)
Q Consensus 162 ~ 162 (257)
+
T Consensus 111 ~ 111 (130)
T PRK00396 111 K 111 (130)
T ss_pred H
Confidence 3
No 358
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.34 E-value=45 Score=19.34 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHhCCCcccc
Q 025159 237 ECEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 237 ~~~~~~~ia~~~~~s~~qv 255 (257)
..+.+..||+++|++..++
T Consensus 5 ~gDtl~~IA~~~~~~~~~l 23 (44)
T PF01476_consen 5 PGDTLWSIAKRYGISVDEL 23 (44)
T ss_dssp TT--HHHHHHHTTS-HHHH
T ss_pred cCCcHHHHHhhhhhhHhHH
Confidence 3478899999999988765
No 359
>PTZ00081 enolase; Provisional
Probab=22.31 E-value=6.4e+02 Score=23.45 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=62.3
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcC--CeeEEEe--cCC
Q 025159 99 AHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLG--YTKAIGV--SNF 174 (257)
Q Consensus 99 ~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~ 174 (257)
.+++.+.+-+.+.++.+ ++++|..|-. .+-|+.+.+|.+.= .+.-+|= +..
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~--------------------~~D~eg~~~Lt~~lg~~i~IvgDE~~~t 335 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD--------------------QDDWEAYAKLTAAIGQKVQIVGDDLLVT 335 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC--------------------cccHHHHHHHHHhhCCCceEEcCCcccC
Confidence 45566666565666654 4677888743 23355566666543 5655553 346
Q ss_pred CHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEec
Q 025159 175 SCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 175 ~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~ 221 (257)
+++.+.+.++....+ ++|+..|-... ..++++.|+++|+.++...
T Consensus 336 n~~~l~~~I~~~aad--~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iish 383 (439)
T PTZ00081 336 NPTRIKKAIEKKACN--ALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSH 383 (439)
T ss_pred CHHHHHHHHHhCCCC--EEEeccccccCHHHHHHHHHHHHHcCCcEEEeC
Confidence 789999998876655 66666654332 3678999999999988743
No 360
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.30 E-value=6.2e+02 Score=23.27 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=84.9
Q ss_pred CCCCCC-hHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCC
Q 025159 60 ATLYQT-EQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEF 138 (257)
Q Consensus 60 A~~Yg~-e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~ 138 (257)
+..+|. +..+-++++...+.. +-+-++|.|-+-+. .+=..++...++. ....++.+|.|.....
T Consensus 65 ~~v~G~~~~~L~~~i~~~~~~~---~P~~I~V~tTC~se-----~IGdDi~~~~~~~--~~~pVi~v~tpgF~~~----- 129 (422)
T TIGR02015 65 QLVTGKLFEDVRCSVHKLADPA---SYDAIVVINLCVPT-----ASGVPLELLPKRI--NGVRVLGIDVPGFGVP----- 129 (422)
T ss_pred ceEeCchHHHHHHHHHHHhhcC---CCCEEEEECCCcHH-----HhcCcHHHHHHhc--CCCCeEEEeCCCCCCc-----
Confidence 334675 788888888874332 23556777765432 2222333333332 2469999999966221
Q ss_pred CCcccCCCCccHHHHHHHHHHHH-----------------HcCCeeEEEec-CCCHHHHHHHHHhCCCCCceeccccCCC
Q 025159 139 PIKKEDFLPMDFKSVWEAMEECQ-----------------NLGYTKAIGVS-NFSCKKLGDILATAKIPPAANQVEMNPL 200 (257)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~l~-----------------~~G~ir~iGvs-~~~~~~l~~~~~~~~~~p~~~q~~~~~~ 200 (257)
......+.+++++.+.. ....+--+|.- .-+.++++++++..++++.+.- +-..+
T Consensus 130 ------s~~~G~d~a~~ai~~~l~~~~~~g~~~~~~~~~~~~~~vnl~G~~~~gd~~eik~lL~~~Gi~~~~~~-~G~~~ 202 (422)
T TIGR02015 130 ------THAEAKDVLVSAMLKYARREVSAGPVGEPKSGRDSKPTLVLLGEIFPVDAMVIGGVLQPIGVESGPTV-PGRDW 202 (422)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCceeeecCCCcccHHHHHHHHHHcCCCeEEec-CCCCH
Confidence 00122333444444311 12334455643 3367889999998887752211 10000
Q ss_pred ---------------CC-cHHHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCCc
Q 025159 201 ---------------WQ-QNKLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKTV 252 (257)
Q Consensus 201 ---------------~~-~~~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s~ 252 (257)
+. ........+++||+.+.-+|++- --.+.-+.++|+-.|+++
T Consensus 203 ~ei~~a~~A~~~i~l~~~~~~a~~l~~~~GvP~~~~~PiG~---------~~Td~fL~~la~~~G~~~ 261 (422)
T TIGR02015 203 RELYAALDSSAVAVLHPFYEATARLFEAAGVKIVGSAPVGA---------NGTGEWLERIGEALDLDP 261 (422)
T ss_pred HHHHhhhcCeEEEEeCccchHHHHHHHHcCCceeccCCCCh---------HHHHHHHHHHHHHhCcCH
Confidence 00 01223333478999876667653 124566677777777653
No 361
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.29 E-value=4.6e+02 Score=21.80 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHHHcCCeeEEEecCC-------CHHHHHHHHHhCCCC-CceeccccCCCCCcHHHHHHHHHCCceEE
Q 025159 148 MDFKSVWEAMEECQNLGYTKAIGVSNF-------SCKKLGDILATAKIP-PAANQVEMNPLWQQNKLREFCKAKDIQLA 218 (257)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~-p~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 218 (257)
..+..+++.+.+.+.+|..--|=+-.| ..+...+..+.++.. +.++-++ ......+..+|+++||.++
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlP---pEEa~~~Rne~~k~gislv 152 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLP---PEEAETLRNEARKHGISLV 152 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCC---hHHHHHHHHHHHhcCceEE
Confidence 446667777777777777554443332 333333333333321 1111111 0112457888888888777
No 362
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.27 E-value=6.6e+02 Score=23.58 Aligned_cols=161 Identities=10% Similarity=-0.051 Sum_probs=80.6
Q ss_pred CChhHHHHHHHHHH-HcCCceeeCCCCC--CChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 37 SGSETTKLAILEAM-KLGYRHFDTATLY--QTEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 37 ~~~~~~~~~l~~Al-~~Gi~~~DtA~~Y--g~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
.+.+...+-++... +.|+++|..++.. .+.+.+-+.++.+.+.+. ..-...+.+.+- .... .+.+-+.++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~--l~i~w~~~~r~~--~i~~---d~ell~~l~ 294 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNP--ISVTWGINTRVT--DIVR---DADILHLYR 294 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCC--CCeEEEEecccc--cccC---CHHHHHHHH
Confidence 46677777777666 4799987544331 244444455555422210 011112222221 1100 123445566
Q ss_pred hhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeE----EEecCCCHHHHHHHHHhCC-C
Q 025159 114 NLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKA----IGVSNFSCKKLGDILATAK-I 188 (257)
Q Consensus 114 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~-~ 188 (257)
+.|+.++ .+- .+...+... +.-......++..++++.+++.|-... +|+-+-+.+.+++.++.+. .
T Consensus 295 ~aG~~~v---~iG-iES~~~~~L-----~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l 365 (497)
T TIGR02026 295 RAGLVHI---SLG-TEAAAQATL-----DHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDW 365 (497)
T ss_pred HhCCcEE---EEc-cccCCHHHH-----HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 6676443 322 222111000 000011346788899999999986332 4677778888877766543 4
Q ss_pred CCceeccccCCCC--CcHHHHHHHHHCCc
Q 025159 189 PPAANQVEMNPLW--QQNKLREFCKAKDI 215 (257)
Q Consensus 189 ~p~~~q~~~~~~~--~~~~~~~~~~~~gi 215 (257)
+|...++ +.+. +..++.+.+++++.
T Consensus 366 ~~~~~~~--~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 366 DPDQANW--LMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCceEE--EEecCCCCcHHHHHHHhhcc
Confidence 4444433 3333 34678888877654
No 363
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.00 E-value=3.3e+02 Score=22.05 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-ChHHHH--HHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-TEQPLG--DAIAEALSTGIIKSRDELFIASKLWCSDAHRELVVPALQKSLE 113 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-~e~~lg--~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~ 113 (257)
.+.++...+.+.|.+.|..++=|+..|. .-.-++ +.+++.+ +.. +-.|....-.+.+...+-++.-..
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~~--v~ik~aGGikt~~~~l~~~~~g~~ 198 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GGR--VGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCC--ceEEEeCCCCCHHHHHHHHHhChh
Confidence 3568899999999999999999998775 112222 3344431 221 233432222255677777776667
Q ss_pred hhCC
Q 025159 114 NLQL 117 (257)
Q Consensus 114 ~Lg~ 117 (257)
|+|+
T Consensus 199 riG~ 202 (203)
T cd00959 199 RIGT 202 (203)
T ss_pred hccC
Confidence 7765
No 364
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=21.77 E-value=3.2e+02 Score=23.23 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHcCCeeEEEecCCCHHHHHHHHHhC
Q 025159 160 CQNLGYTKAIGVSNFSCKKLGDILATA 186 (257)
Q Consensus 160 l~~~G~ir~iGvs~~~~~~l~~~~~~~ 186 (257)
+++.+.-+.|=+|+|+++.+..+....
T Consensus 164 i~~~~~~~~viisSF~~~~l~~l~~~~ 190 (282)
T cd08605 164 CKQHAPGRRIMFSSFDPDAAVLLRALQ 190 (282)
T ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhcC
Confidence 344566677889999999998886644
No 365
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=21.72 E-value=3.3e+02 Score=19.95 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC--CcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHH
Q 025159 84 SRDELFIASKLWCSDAHRELVVPALQKSLENLQL--EYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQ 161 (257)
Q Consensus 84 ~R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~--d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 161 (257)
+|-.+.|+-|.......++.+++.+.++.+.... ...|++++-.+... ..+..++.+.|..+.
T Consensus 45 ~R~G~~VsKK~~g~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~---------------~~~~~~l~~~l~~ll 109 (114)
T PRK01732 45 PRLGLTVAKKNVKRAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVA---------------DLDNRELFELLEKLW 109 (114)
T ss_pred cEEEEEEEcccCcchhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcc---------------cCCHHHHHHHHHHHH
Confidence 5666777777555566788899988888886532 34699998877442 234667777777765
Q ss_pred H
Q 025159 162 N 162 (257)
Q Consensus 162 ~ 162 (257)
+
T Consensus 110 ~ 110 (114)
T PRK01732 110 R 110 (114)
T ss_pred H
Confidence 4
No 366
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.64 E-value=3.8e+02 Score=20.62 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred cCCeeEEEecCCCHHHHHHHHH----hCCCCCceeccccCCCCC----c------HHHHHHHHHCCceEEEecCCCCCCC
Q 025159 163 LGYTKAIGVSNFSCKKLGDILA----TAKIPPAANQVEMNPLWQ----Q------NKLREFCKAKDIQLAAYAPLGARGT 228 (257)
Q Consensus 163 ~G~ir~iGvs~~~~~~l~~~~~----~~~~~p~~~q~~~~~~~~----~------~~~~~~~~~~gi~v~~~~pl~~~G~ 228 (257)
.-.|-..|++..+..++.+-++ ....+..++++--|=... + ..+++.|++.+..++...|.-....
T Consensus 31 ~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~ 110 (183)
T cd04501 31 GKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDY 110 (183)
T ss_pred CCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCcc
Confidence 3456677999988666433322 223444555554442221 1 5689999999988777665432010
Q ss_pred CC-C------CCCccChHHHHHHHHHhCCCcc
Q 025159 229 IW-G------SNRVMECEVLKEIAEAKGKTVA 253 (257)
Q Consensus 229 l~-~------~~~~~~~~~~~~ia~~~~~s~~ 253 (257)
.+ . .......+.++++|++.++...
T Consensus 111 ~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~v 142 (183)
T cd04501 111 PWKPQWLRPANKLKSLNRWLKDYARENGLLFL 142 (183)
T ss_pred ccchhhcchHHHHHHHHHHHHHHHHHcCCCEE
Confidence 00 0 0001124678889998886643
No 367
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.62 E-value=5.9e+02 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHH
Q 025159 36 FSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEA 76 (257)
Q Consensus 36 ~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~ 76 (257)
+.+.+...++++.+.+.|...|=.++..| ....+.+.++..
T Consensus 137 r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l 179 (363)
T TIGR02090 137 RTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKL 179 (363)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 35666667777777777766554444444 344555555544
No 368
>PRK10799 metal-binding protein; Provisional
Probab=21.48 E-value=2.1e+02 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHcCCceeeCCCCCCChHH
Q 025159 46 ILEAMKLGYRHFDTATLYQTEQP 68 (257)
Q Consensus 46 l~~Al~~Gi~~~DtA~~Yg~e~~ 68 (257)
...|.+.|++++|.. .|.+|..
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~ 221 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERG 221 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHH
Confidence 444555555555533 3334444
No 369
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.46 E-value=3.4e+02 Score=22.38 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCeeEEEecCC-CHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEE
Q 025159 154 WEAMEECQNLGYTKAIGVSNF-SCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLA 218 (257)
Q Consensus 154 ~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 218 (257)
.+.++.++++.-=..||..+- +.++++++.+... ++.+ +|... .++++.|++++|.++
T Consensus 54 ~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA-~Fiv-----sP~~~-~~vi~~a~~~~i~~i 112 (212)
T PRK05718 54 LEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA-QFIV-----SPGLT-PPLLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC-CEEE-----CCCCC-HHHHHHHHHcCCCEe
Confidence 344445544322245777665 5677777766543 2111 22222 378888888887777
No 370
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.45 E-value=1.9e+02 Score=29.54 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhCCCc--ccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Q 025159 105 VPALQKSLENLQLEY--IDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSNFSCKKL 179 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~--lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 179 (257)
.-++.=+|..+=..+ +++++|.-|...-+ ....+.+.+.|+.+... ++.|||-+|+.+-.
T Consensus 825 sLalrLALs~~~~~~~~l~~l~LDEpf~~LD-------------~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~ 886 (908)
T COG0419 825 SLALRLALSDLLQGRARLELLFLDEPFGTLD-------------EERLEKLAEILEELLSD--GRQIIIISHVEELK 886 (908)
T ss_pred HHHHHHHHHHHHhcccCCCeeEeeCCCCCCC-------------HHHHHHHHHHHHHHHhc--CCeEEEEeChHHHH
Confidence 334555555555556 99999999865432 23467788888888887 78899999986654
No 371
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.41 E-value=5.3e+02 Score=22.26 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHHHcCCceeeCC
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTA 60 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA 60 (257)
..+|.....++.|++.|++.|++-
T Consensus 38 ~~PENTl~Af~~A~~~Gad~iE~D 61 (300)
T cd08612 38 ENLENTMEAFEHAVKVGTDMLELD 61 (300)
T ss_pred CCCccHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999988643
No 372
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.32 E-value=7.1e+02 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=22.8
Q ss_pred cceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC
Q 025159 27 LGLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ 64 (257)
Q Consensus 27 lglG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 64 (257)
+.||+.-.++.+.+-+.++++.|.+.|.+.|-.++..|
T Consensus 226 v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG 263 (503)
T PLN03228 226 IQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVG 263 (503)
T ss_pred EEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 34454443445666667777777777776665555555
No 373
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=21.28 E-value=49 Score=21.65 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCccccc
Q 025159 240 VLKEIAEAKGKTVAQVL 256 (257)
Q Consensus 240 ~~~~ia~~~~~s~~qva 256 (257)
-+.+||+++|+++.++|
T Consensus 15 ~FveIAr~~~i~a~e~a 31 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVA 31 (63)
T ss_pred cHHHHHHHhCCCHHHHH
Confidence 46789999999887765
No 374
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.22 E-value=4.3e+02 Score=21.03 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=27.0
Q ss_pred HHHHHHHHcC--CeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCce
Q 025159 155 EAMEECQNLG--YTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQ 216 (257)
Q Consensus 155 ~~l~~l~~~G--~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~ 216 (257)
+.++++++.. .+. +.+..++.....+.+...+.+ .+|+....-......++.+++.|+.
T Consensus 46 ~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~~~~~gad--gv~vh~~~~~~~~~~~~~~~~~g~~ 106 (210)
T TIGR01163 46 PVLEALRKYTDLPID-VHLMVENPDRYIEDFAEAGAD--IITVHPEASEHIHRLLQLIKDLGAK 106 (210)
T ss_pred HHHHHHHhcCCCcEE-EEeeeCCHHHHHHHHHHcCCC--EEEEccCCchhHHHHHHHHHHcCCc
Confidence 4444444432 232 666666666554444444433 4444332211223445555555544
No 375
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.12 E-value=4.9e+02 Score=23.62 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEEeec-CCCC-----CCCCCCCCCcccCCCCccHHHH-HHHHHHHHHcCCee
Q 025159 95 WCSDAHRELVVPALQKSLENLQLEYIDLYVIHW-PVSS-----KPGSYEFPIKKEDFLPMDFKSV-WEAMEECQNLGYTK 167 (257)
Q Consensus 95 ~~~~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~-p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~G~ir 167 (257)
+-+..+.+.+++.++..++ |+.++|.+|.+.- |... ..+....|. .....+. ..+.+.|.+.|..+
T Consensus 170 GlPgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~------~~~~~~~~~~~~~~L~~~Gy~~ 242 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPH------SDAAAEMYEWTNHYLESKKYFR 242 (390)
T ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCC------hHHHHHHHHHHHHHHHHcCCce
Confidence 4456677889999999886 8999999988774 2110 001100000 0011122 23445577789876
Q ss_pred EEEecCCCH
Q 025159 168 AIGVSNFSC 176 (257)
Q Consensus 168 ~iGvs~~~~ 176 (257)
.++|||..
T Consensus 243 -yeis~fa~ 250 (390)
T PRK06582 243 -YEISNYAK 250 (390)
T ss_pred -eeceeeeC
Confidence 79999974
No 376
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.00 E-value=7.2e+02 Score=23.55 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=63.9
Q ss_pred ceeCCcCCCCChhHHHHHHHHHHHcCCceeeCCCCCC--ChHHHHHHHHHHHhCCCCCCCCcEEEEeccCCCCCChhhHH
Q 025159 28 GLGTAASPFSGSETTKLAILEAMKLGYRHFDTATLYQ--TEQPLGDAIAEALSTGIIKSRDELFIASKLWCSDAHRELVV 105 (257)
Q Consensus 28 glG~~~~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~~~~~~~~~~i~ 105 (257)
.|++...++.+.+.+.++++.+.+.|...|-.++..| ....+.+.++...+. .. .++++-|...++.... -.+.
T Consensus 137 ~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~-~~~~v~l~~H~HND~G--lAvA 212 (513)
T PRK00915 137 EFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRER-VP-NIDKAIISVHCHNDLG--LAVA 212 (513)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CC-CcccceEEEEecCCCC--HHHH
Confidence 4555554556667777777777777776665555554 344444444443211 10 2344555555443211 1111
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc-CCeeEEEecCCCHHHHHHHH
Q 025159 106 PALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL-GYTKAIGVSNFSCKKLGDIL 183 (257)
Q Consensus 106 ~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~ 183 (257)
.++... +-|.+++|.=+.---.. -.-.+.+++...|+..++. |.- .+.+...|.++.
T Consensus 213 NslaAv--~aGa~~Vd~Tv~GlGER--------------aGNa~lE~vv~~L~~~~~~~g~~-----~~idl~~l~~~s 270 (513)
T PRK00915 213 NSLAAV--EAGARQVECTINGIGER--------------AGNAALEEVVMALKTRKDIYGVE-----TGINTEEIYRTS 270 (513)
T ss_pred HHHHHH--HhCCCEEEEEeeccccc--------------ccCccHHHHHHHHHhhhcccCCC-----CCcCHHHHHHHH
Confidence 222211 25666666655442211 1113477777777765433 321 245555555443
No 377
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=20.98 E-value=2.3e+02 Score=20.51 Aligned_cols=47 Identities=30% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEE
Q 025159 105 VPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAI 169 (257)
Q Consensus 105 ~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 169 (257)
+..+++.++.+. ..|.+++++.+...+ +..+.+..+..+.+.| |+-+
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R---------------~~~e~~~~~~~l~~~g-i~l~ 88 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGR---------------STKDLLEIVEELREKG-VSLR 88 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcC---------------cHHHHHHHHHHHHHCC-CEEE
Confidence 455666666665 579999999876543 3567788888887776 4444
No 378
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=20.95 E-value=1.4e+02 Score=25.70 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCH-----HHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFSC-----KKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~~-----~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
.......|++|++.|- -||.||.. .++.+.++....- +..+-+++..|++.|+-.++|
T Consensus 94 ~~~~~~fl~~lk~~Gf---~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELGF---SGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhCC---ceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 4466678889998886 69999952 3355555655432 122346677777777655554
No 379
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.89 E-value=4.1e+02 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHcCCce
Q 025159 39 SETTKLAILEAMKLGYRH 56 (257)
Q Consensus 39 ~~~~~~~l~~Al~~Gi~~ 56 (257)
.+.....++.+.+.|+..
T Consensus 67 ~~~~~~~l~~~~~~giPv 84 (302)
T TIGR02637 67 PDALVPALKKAMKRGIKV 84 (302)
T ss_pred hHHHHHHHHHHHHCCCEE
Confidence 344556677777777763
No 380
>PRK06852 aldolase; Validated
Probab=20.88 E-value=1.8e+02 Score=25.64 Aligned_cols=46 Identities=4% Similarity=-0.070 Sum_probs=28.2
Q ss_pred HHHHHHHHCCceEEEecCCCCCCCCCCCCCccChHHHHHHHHHhCCC
Q 025159 205 KLREFCKAKDIQLAAYAPLGARGTIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 205 ~~~~~~~~~gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
.+.+.|+++|+++++|.---+ ........+.......++|.++|-.
T Consensus 158 ~v~~ea~~~GlPll~~~yprG-~~i~~~~~~~~ia~aaRiaaELGAD 203 (304)
T PRK06852 158 QIIYEAHKHGLIAVLWIYPRG-KAVKDEKDPHLIAGAAGVAACLGAD 203 (304)
T ss_pred HHHHHHHHhCCcEEEEeeccC-cccCCCccHHHHHHHHHHHHHHcCC
Confidence 588999999999999753322 2222222223345556777777743
No 381
>PRK11059 regulatory protein CsrD; Provisional
Probab=20.85 E-value=7.7e+02 Score=23.83 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred cEEEEeccCCCCCChhhHHHHHHHHHHhh-CCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCC
Q 025159 87 ELFIASKLWCSDAHRELVVPALQKSLENL-QLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGY 165 (257)
Q Consensus 87 ~l~i~tK~~~~~~~~~~i~~~l~~sL~~L-g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 165 (257)
+..++..+......-..+...+...|... +.. .+-+.+.-++... ....+.+...+..|++.|-
T Consensus 483 ~~~l~inls~~~l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~--------------~~~~~~~~~~l~~L~~~G~ 547 (640)
T PRK11059 483 EENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADV--------------CQHISRLRPVLRMLRGLGC 547 (640)
T ss_pred CCeEEEEcCHHHhCChhHHHHHHHHHHhcCCCC-cceEEEEEechhh--------------hcCHHHHHHHHHHHHHCCC
Confidence 34455555444333356677777777776 543 4666666654321 1235778899999999998
Q ss_pred eeEEEecCCCH--HHHHHHHHhCCCCCceeccccCCCC-----Cc-----HHHHHHHHHCCceEEEe
Q 025159 166 TKAIGVSNFSC--KKLGDILATAKIPPAANQVEMNPLW-----QQ-----NKLREFCKAKDIQLAAY 220 (257)
Q Consensus 166 ir~iGvs~~~~--~~l~~~~~~~~~~p~~~q~~~~~~~-----~~-----~~~~~~~~~~gi~v~~~ 220 (257)
- |++.+|.. ..+..+.. .+|+.+-+.-+... .+ ..++..|+..|+.|++-
T Consensus 548 ~--iaiddfG~g~~s~~~L~~---l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAe 609 (640)
T PRK11059 548 R--LAVDQAGLTVVSTSYIKE---LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFAT 609 (640)
T ss_pred E--EEEECCCCCcccHHHHHh---CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 55555532 12222222 23334433322211 11 57899999999999985
No 382
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=20.84 E-value=1.9e+02 Score=26.58 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=13.9
Q ss_pred HHHHHHHHHCCceEEEecCC
Q 025159 204 NKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 204 ~~~~~~~~~~gi~v~~~~pl 223 (257)
.+++.||+++|+-+++-...
T Consensus 238 e~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 238 EGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred HHHHHHHHHcCeEEechHHH
Confidence 56777888888777765444
No 383
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.76 E-value=63 Score=18.33 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCCcccc
Q 025159 238 CEVLKEIAEAKGKTVAQV 255 (257)
Q Consensus 238 ~~~~~~ia~~~~~s~~qv 255 (257)
.+.+.++|++.|+|.+++
T Consensus 11 ~~~l~~~a~~~g~s~s~~ 28 (39)
T PF01402_consen 11 YERLDELAKELGRSRSEL 28 (39)
T ss_dssp HHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHCcCHHHH
Confidence 367889999999887765
No 384
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=20.73 E-value=5e+02 Score=21.66 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEecCCC-------HHHHHHHHHhCCCCCceeccccCCCCC--------------------
Q 025159 150 FKSVWEAMEECQNLGYTKAIGVSNFS-------CKKLGDILATAKIPPAANQVEMNPLWQ-------------------- 202 (257)
Q Consensus 150 ~~~~~~~l~~l~~~G~ir~iGvs~~~-------~~~l~~~~~~~~~~p~~~q~~~~~~~~-------------------- 202 (257)
...=+++-.+|+++|||+++=+|.-+ +..+.+.+...++++...-+.|.-+..
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 44567888999999999999888543 444555556666665555455543321
Q ss_pred ----cHHHHHHHHHCCceEEEecCC
Q 025159 203 ----QNKLREFCKAKDIQLAAYAPL 223 (257)
Q Consensus 203 ----~~~~~~~~~~~gi~v~~~~pl 223 (257)
-+..+=.|+++||.-+++..-
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFAAP 182 (235)
T ss_pred cccccHHHHHHHHHhCCceEEecCC
Confidence 135566788888888877643
No 385
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.61 E-value=6.2e+02 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.3
Q ss_pred EEEecCCCHHHHHHHHHhCCCC
Q 025159 168 AIGVSNFSCKKLGDILATAKIP 189 (257)
Q Consensus 168 ~iGvs~~~~~~l~~~~~~~~~~ 189 (257)
-++++.++++..+++++....+
T Consensus 295 v~~~G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 295 IIGAGAYTAEKAETLIGKGLID 316 (362)
T ss_pred EEEeCCCCHHHHHHHHHcCCCC
Confidence 3555667899999998877654
No 386
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.57 E-value=58 Score=19.58 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCcccc
Q 025159 240 VLKEIAEAKGKTVAQV 255 (257)
Q Consensus 240 ~~~~ia~~~~~s~~qv 255 (257)
.+.++|+++|+|..+|
T Consensus 14 s~~~~a~~~gis~~tv 29 (52)
T PF13518_consen 14 SVREIAREFGISRSTV 29 (52)
T ss_pred CHHHHHHHHCCCHhHH
Confidence 5677888888877665
No 387
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.53 E-value=4.9e+02 Score=25.76 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCC-----ChHHHHHHHHHHHhCCCCCCCCcEEEEe--ccCCC------------
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQ-----TEQPLGDAIAEALSTGIIKSRDELFIAS--KLWCS------------ 97 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----~e~~lg~~l~~~~~~~~~~~R~~l~i~t--K~~~~------------ 97 (257)
.|.+++.+.+....+.|+.-|=.+..+. +|..+++.+++. - .++.|++ ++++.
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~-------~-~~i~V~~shev~p~~~~~eR~~Tavl 207 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREI-------G-PDIPVSLSHEVSPEIGEYERANTAVL 207 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHh-------c-CCceEEechhcchhcCcccchhhhee
Confidence 7889999999999999999776665433 699999999987 3 5666666 77551
Q ss_pred --CC--ChhhHHHHHHHHHHhhCCCcccEEEeecCC
Q 025159 98 --DA--HRELVVPALQKSLENLQLEYIDLYVIHWPV 129 (257)
Q Consensus 98 --~~--~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~ 129 (257)
.. --....++++..|+.-|.+ ..++++.+..
T Consensus 208 nA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 208 NAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred eeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 01 1255667778888888876 5777777643
No 388
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.53 E-value=3.9e+02 Score=24.93 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.6
Q ss_pred eeEEEec-CCCHHHHHHHHHhCCCCCceeccccC
Q 025159 166 TKAIGVS-NFSCKKLGDILATAKIPPAANQVEMN 198 (257)
Q Consensus 166 ir~iGvs-~~~~~~l~~~~~~~~~~p~~~q~~~~ 198 (257)
++.+||. |-+++.+.++.+..+++ ++|+.-+
T Consensus 307 v~~VgVfv~~~~~~i~~i~~~~~lD--~vQLHG~ 338 (454)
T PRK09427 307 LRYVGVFRNADIEDIVDIAKQLSLA--AVQLHGD 338 (454)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCC--EEEeCCC
Confidence 8889987 77889999988876655 8887653
No 389
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=20.52 E-value=4.4e+02 Score=22.28 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCeeEEEecCC------C-HHHHHHHHHhCCCCCceeccccCCCCCc---------------------
Q 025159 152 SVWEAMEECQNLGYTKAIGVSNF------S-CKKLGDILATAKIPPAANQVEMNPLWQQ--------------------- 203 (257)
Q Consensus 152 ~~~~~l~~l~~~G~ir~iGvs~~------~-~~~l~~~~~~~~~~p~~~q~~~~~~~~~--------------------- 203 (257)
+=+.+-.+|+++|++..|=+|.- + ++.+.+.+...++++.-+..++...+..
T Consensus 68 ~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~ 147 (239)
T PRK10834 68 YRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR 147 (239)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH
Confidence 44556667999999988877763 2 4445666666677765555555544421
Q ss_pred ---HHHHHHHHHCCceEEEec
Q 025159 204 ---NKLREFCKAKDIQLAAYA 221 (257)
Q Consensus 204 ---~~~~~~~~~~gi~v~~~~ 221 (257)
...+-.|++.|+.++++.
T Consensus 148 fHm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 148 FHCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHHHHHHcCCceEEEe
Confidence 345666778888877774
No 390
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.51 E-value=4.9e+02 Score=21.45 Aligned_cols=136 Identities=9% Similarity=0.049 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHHcCCceeeCCCCCCChHHHHHHHHHHHhCCCCCCCCcEEEEecc-CCCCC-ChhhHHHHHHHHHHh
Q 025159 37 SGSETTKLAILEAMKLGYRHFDTATLYQTEQPLGDAIAEALSTGIIKSRDELFIASKL-WCSDA-HRELVVPALQKSLEN 114 (257)
Q Consensus 37 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg~e~~lg~~l~~~~~~~~~~~R~~l~i~tK~-~~~~~-~~~~i~~~l~~sL~~ 114 (257)
.+.++..+.++.|.+.|+.-+=..+.| +-.+-+.+ ...++.|+|=+ +|... +.+.-...+++.++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l-------~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~- 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELL-------KGTEVRICTVVGFPLGASTTDVKLYETKEAIK- 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHc-------CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH-
Confidence 578899999999999998777555543 33222222 12345555555 34333 33344444555554
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHc--CCe-eEE-EecCCCHHHHHHHHHhCC-CC
Q 025159 115 LQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNL--GYT-KAI-GVSNFSCKKLGDILATAK-IP 189 (257)
Q Consensus 115 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~i-r~i-Gvs~~~~~~l~~~~~~~~-~~ 189 (257)
+|.|-+|+++--..-. .-..+...+.+.+.++. |.. +-| -.+-.+.+++..+.+.+- ..
T Consensus 82 ~GAdEiDvv~n~g~l~----------------~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG 145 (211)
T TIGR00126 82 YGADEVDMVINIGALK----------------DGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG 145 (211)
T ss_pred cCCCEEEeecchHhhh----------------CCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 7999999987543211 11256777777777764 543 332 222234455555444321 33
Q ss_pred Cceeccc--cCCCC
Q 025159 190 PAANQVE--MNPLW 201 (257)
Q Consensus 190 p~~~q~~--~~~~~ 201 (257)
.+++..+ |.+..
T Consensus 146 ADfvKTsTGf~~~g 159 (211)
T TIGR00126 146 ADFVKTSTGFGAGG 159 (211)
T ss_pred CCEEEeCCCCCCCC
Confidence 4466666 65433
No 391
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.48 E-value=2.6e+02 Score=23.83 Aligned_cols=67 Identities=13% Similarity=-0.015 Sum_probs=46.5
Q ss_pred HHHHHHcCCeeEEEe-cCCCHHHHHHHHHhCCCCCceeccccCCCCCc--HHHHHHHHHCCceEEEecCCC
Q 025159 157 MEECQNLGYTKAIGV-SNFSCKKLGDILATAKIPPAANQVEMNPLWQQ--NKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 157 l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~--~~~~~~~~~~gi~v~~~~pl~ 224 (257)
|.+-.++|+. .+|+ .......+.+++...+++..++=.+-.+++.+ ..++..|+..|+..+..-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 3344445765 3554 33444456677777889988888888877764 678899999999998887654
No 392
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.36 E-value=5.4e+02 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccE
Q 025159 85 RDELFIASKLWCSDAHRELVVPALQKSLENLQLEYIDL 122 (257)
Q Consensus 85 R~~l~i~tK~~~~~~~~~~i~~~l~~sL~~Lg~d~lDl 122 (257)
-.=+||.|| ..-.+.+.+.-++.|.-|+.-
T Consensus 65 g~ILfVgTK--------~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 65 GKILFVGTK--------KQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred CEEEEEech--------HHHHHHHHHHHHHhCCceecC
Confidence 355889998 556777888888999877653
No 393
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=20.32 E-value=56 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCccccc
Q 025159 239 EVLKEIAEAKGKTVAQVL 256 (257)
Q Consensus 239 ~~~~~ia~~~~~s~~qva 256 (257)
+...++|++||++..+|.
T Consensus 23 ~s~~~ia~~fgv~~sTv~ 40 (53)
T PF04218_consen 23 ESKRDIAREFGVSRSTVS 40 (53)
T ss_dssp T-HHHHHHHHT--CCHHH
T ss_pred CCHHHHHHHhCCCHHHHH
Confidence 467889999999888763
No 394
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=20.29 E-value=4.6e+02 Score=21.07 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHcCCeeEEEecC-CCHHHHHHHHHhCCC
Q 025159 110 KSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQNLGYTKAIGVSN-FSCKKLGDILATAKI 188 (257)
Q Consensus 110 ~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~ 188 (257)
..+..+|.||+=+.+ +|... + ... .+...++.+.-..+.+||.- -+++.+.++.+...
T Consensus 13 ~~~~~~g~d~~Gfi~--~~~S~-R-------------~v~----~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~- 71 (197)
T PF00697_consen 13 RLAAELGADYLGFIF--YPKSP-R-------------YVS----PDQARELVSAVPPKIVGVFVNQSPEEILEIVEELG- 71 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCT-T-------------B------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCT-
T ss_pred HHHHHcCCCEEeeec--CCCCC-C-------------ccC----HHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcC-
Confidence 356678999887764 34211 0 111 23444555544444799774 46777888877655
Q ss_pred CCceeccccCCCCCcHHHHHHHHHCCceEE
Q 025159 189 PPAANQVEMNPLWQQNKLREFCKAKDIQLA 218 (257)
Q Consensus 189 ~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~ 218 (257)
+.++|+.-+- ..+..+..+ .+++++
T Consensus 72 -ld~vQLHG~e---~~e~~~~l~-~~~~vi 96 (197)
T PF00697_consen 72 -LDVVQLHGDE---SPEYIKLLR-AGLPVI 96 (197)
T ss_dssp -ESEEEE-SGG----HHHHHHHH-TTSEEE
T ss_pred -CCEEEECCCC---CHHHHHHhh-cCceEE
Confidence 4588876433 334444444 344443
No 395
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.24 E-value=5.7e+02 Score=22.07 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=74.1
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEEeecCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHH--cCCee-EEEecCC
Q 025159 98 DAHRELVVPALQKSLENLQLEYIDLYVIHWPVSSKPGSYEFPIKKEDFLPMDFKSVWEAMEECQN--LGYTK-AIGVSNF 174 (257)
Q Consensus 98 ~~~~~~i~~~l~~sL~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir-~iGvs~~ 174 (257)
..+.+.+++.++..+. -| +|-+++-.-.-+.. .++.+|-.+.++..++ .|++. ..||+..
T Consensus 17 ~iD~~~l~~lv~~~~~-~G---v~gi~v~GstGE~~-------------~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~ 79 (294)
T TIGR02313 17 DIDEEALRELIEFQIE-GG---SHAISVGGTSGEPG-------------SLTLEERKQAIENAIDQIAGRIPFAPGTGAL 79 (294)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECccCcccc-------------cCCHHHHHHHHHHHHHHhCCCCcEEEECCcc
Confidence 4567888888888886 35 56777665433222 4556666666666554 56653 3588877
Q ss_pred CHHHHHHHH---HhCCCCCceeccccCCCCCcHHHHH----HHHHC-CceEEEecCCCCCCCCCCCCCccChHHHHHHHH
Q 025159 175 SCKKLGDIL---ATAKIPPAANQVEMNPLWQQNKLRE----FCKAK-DIQLAAYAPLGARGTIWGSNRVMECEVLKEIAE 246 (257)
Q Consensus 175 ~~~~l~~~~---~~~~~~p~~~q~~~~~~~~~~~~~~----~~~~~-gi~v~~~~pl~~~G~l~~~~~~~~~~~~~~ia~ 246 (257)
+.....++. +..+.+-.++.-+|..--.++++++ .|+.- +++++.|+--...|. .+..+.+.++++
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~------~l~~~~l~~L~~ 153 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQ------EIAPKTMARLRK 153 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCc------CCCHHHHHHHHh
Confidence 665543333 3334555555556543323445544 45566 899999974321132 234567777776
Q ss_pred Hh
Q 025159 247 AK 248 (257)
Q Consensus 247 ~~ 248 (257)
++
T Consensus 154 ~~ 155 (294)
T TIGR02313 154 DC 155 (294)
T ss_pred hC
Confidence 54
No 396
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.23 E-value=1.2e+02 Score=16.75 Aligned_cols=16 Identities=31% Similarity=0.133 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHcCCc
Q 025159 40 ETTKLAILEAMKLGYR 55 (257)
Q Consensus 40 ~~~~~~l~~Al~~Gi~ 55 (257)
++-..++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5678899999999986
No 397
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.13 E-value=6.3e+02 Score=22.58 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=36.6
Q ss_pred eeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCC---cHHHHHHHHHCCceEEEecCCC
Q 025159 166 TKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQ---QNKLREFCKAKDIQLAAYAPLG 224 (257)
Q Consensus 166 ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~---~~~~~~~~~~~gi~v~~~~pl~ 224 (257)
++..-+...+++.+++.++ .+.+..+...+.|+... -.++.+.|+++|+.++.=...+
T Consensus 111 ~~v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred cEEEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 3333344457777777764 23444455555565443 2678999999999998766554
No 398
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=20.12 E-value=5.8e+02 Score=22.10 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEecCCCCCC
Q 025159 148 MDFKSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAYAPLGARG 227 (257)
Q Consensus 148 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~~pl~~~G 227 (257)
.+.+|-..-|+++..+-.--.+| ..++.+.++++++...+. +...-.++++.|+++||++...| + |
T Consensus 81 ~~~~eK~~~m~eWw~k~~~l~~~-~~~~~e~i~~~v~~~~l~---------l~pG~~efl~~L~~~GIpv~IvS---~-G 146 (277)
T TIGR01544 81 LTVEEKYPYMVEWWTKSHGLLVQ-QAFPKAKIKEIVAESDVM---------LKDGYENFFDKLQQHSIPVFIFS---A-G 146 (277)
T ss_pred CChHHhhhHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCc---------cCcCHHHHHHHHHHCCCcEEEEe---C-C
Confidence 34566666666665532221122 345778888887644433 11223589999999999998765 2 2
Q ss_pred CCCCCCCccChHHHHHHHHHhCCC
Q 025159 228 TIWGSNRVMECEVLKEIAEAKGKT 251 (257)
Q Consensus 228 ~l~~~~~~~~~~~~~~ia~~~~~s 251 (257)
+ ...+..+.+++|+.
T Consensus 147 ~---------~~~Ie~vL~~lgl~ 161 (277)
T TIGR01544 147 I---------GNVLEEVLRQAGVY 161 (277)
T ss_pred c---------HHHHHHHHHHcCCC
Confidence 1 25566666666653
No 399
>PRK07283 hypothetical protein; Provisional
Probab=20.08 E-value=3.3e+02 Score=19.30 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhCCCCCceeccccCCCCCcHHHHHHHHHCCceEEEe
Q 025159 151 KSVWEAMEECQNLGYTKAIGVSNFSCKKLGDILATAKIPPAANQVEMNPLWQQNKLREFCKAKDIQLAAY 220 (257)
Q Consensus 151 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~p~~~q~~~~~~~~~~~~~~~~~~~gi~v~~~ 220 (257)
+.++..|--.++.|++- .|. ++..+.++.......+.--+.+. +..+.+.+.|+.++|+++.+
T Consensus 4 ~~~l~~LglA~raGklv-~G~-----~~v~~aik~gk~~lVi~A~Das~-~~~kk~~~~~~~~~Vp~~~~ 66 (98)
T PRK07283 4 QKISNLLGLAQRAGRII-SGE-----ELVVKAIQSGQAKLVFLANDAGP-NLTKKVTDKSNYYQVEVSTV 66 (98)
T ss_pred HHHHHHHHHHHHhCCee-EcH-----HHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEe
Confidence 46777788888899983 454 57777777666665554333322 11256778999999998755
No 400
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.04 E-value=5.7e+02 Score=22.03 Aligned_cols=30 Identities=10% Similarity=-0.124 Sum_probs=21.6
Q ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhCC
Q 025159 158 EECQNLGYTKAIGVSNFSCKKLGDILATAK 187 (257)
Q Consensus 158 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 187 (257)
+.+++.+..+.+=+++|+++.+..+.....
T Consensus 171 ~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 171 AVVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 334455667778899999999888766543
No 401
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=20.01 E-value=2.3e+02 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=7.1
Q ss_pred HHHHHHHHCCceEEE
Q 025159 205 KLREFCKAKDIQLAA 219 (257)
Q Consensus 205 ~~~~~~~~~gi~v~~ 219 (257)
++.+||+++|++++.
T Consensus 176 ~~~~fa~~h~l~~it 190 (203)
T COG0108 176 ELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHHHHHcCCcEEE
Confidence 444444444444443
Done!