Query 025161
Match_columns 257
No_of_seqs 190 out of 1207
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03019 carbonic anhydrase 100.0 4.2E-70 9.1E-75 496.9 23.3 256 1-257 73-330 (330)
2 PLN03014 carbonic anhydrase 100.0 4.6E-70 1E-74 498.8 22.8 257 1-257 78-336 (347)
3 PLN00416 carbonate dehydratase 100.0 9.6E-66 2.1E-70 459.4 23.4 253 1-254 1-254 (258)
4 PLN03006 carbonate dehydratase 100.0 1.6E-59 3.6E-64 424.2 20.2 238 15-254 45-284 (301)
5 PRK10437 carbonic anhydrase; P 100.0 1.7E-54 3.8E-59 378.9 18.5 196 49-253 3-199 (220)
6 cd00884 beta_CA_cladeB Carboni 100.0 1.4E-54 3.1E-59 372.8 16.2 189 56-245 1-190 (190)
7 COG0288 CynT Carbonic anhydras 100.0 1.9E-53 4.1E-58 370.0 18.0 198 48-252 2-202 (207)
8 PRK15219 carbonic anhydrase; P 100.0 2.4E-53 5.3E-58 377.2 18.8 190 43-245 50-244 (245)
9 cd00883 beta_CA_cladeA Carboni 100.0 1.5E-53 3.2E-58 364.5 15.9 180 57-245 1-182 (182)
10 PLN02154 carbonic anhydrase 100.0 9.5E-53 2.1E-57 378.2 19.9 205 45-250 71-275 (290)
11 cd03378 beta_CA_cladeC Carboni 100.0 1.5E-48 3.2E-53 324.8 16.7 150 46-245 1-154 (154)
12 PF00484 Pro_CA: Carbonic anhy 100.0 1.2E-44 2.6E-49 300.2 12.3 152 83-242 1-153 (153)
13 cd00382 beta_CA Carbonic anhyd 100.0 8.1E-43 1.8E-47 279.3 14.4 119 79-245 1-119 (119)
14 KOG1578 Predicted carbonic anh 100.0 3.8E-43 8.3E-48 310.2 13.1 236 1-248 25-260 (276)
15 cd03379 beta_CA_cladeD Carboni 100.0 5.6E-40 1.2E-44 270.4 13.7 142 79-245 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.3 1.7E-08 3.6E-13 90.4 -5.1 190 53-245 3-249 (276)
17 TIGR02742 TrbC_Ftype type-F co 79.2 6.1 0.00013 32.1 5.8 56 65-139 57-112 (130)
18 PF10070 DUF2309: Uncharacteri 71.2 9.6 0.00021 39.9 6.3 38 212-249 540-583 (788)
19 COG1254 AcyP Acylphosphatases 68.1 4.4 9.5E-05 31.0 2.3 21 226-246 28-48 (92)
20 PF14559 TPR_19: Tetratricopep 56.5 25 0.00053 23.7 4.3 37 2-41 3-39 (68)
21 PF02845 CUE: CUE domain; Int 56.2 32 0.00068 21.9 4.4 42 6-57 1-42 (42)
22 PF00355 Rieske: Rieske [2Fe-2 46.5 7.8 0.00017 28.7 0.4 14 230-243 66-79 (97)
23 COG3002 Uncharacterized protei 43.6 44 0.00095 34.4 5.2 22 227-248 623-644 (880)
24 PF01707 Peptidase_C9: Peptida 41.0 13 0.00028 32.3 0.9 35 211-251 138-173 (202)
25 PF08184 Cuticle_2: Cuticle pr 40.6 14 0.0003 25.0 0.8 13 231-243 7-19 (59)
26 cd03528 Rieske_RO_ferredoxin R 39.7 11 0.00025 27.9 0.4 15 229-243 61-75 (98)
27 PRK14432 acylphosphatase; Prov 39.3 23 0.0005 26.9 2.0 20 227-246 27-46 (93)
28 cd03478 Rieske_AIFL_N AIFL (ap 38.1 11 0.00023 28.1 0.0 15 229-243 60-74 (95)
29 PF00009 GTP_EFTU: Elongation 37.6 21 0.00045 29.7 1.7 15 139-153 2-16 (188)
30 PRK14423 acylphosphatase; Prov 36.7 32 0.00069 26.0 2.5 20 226-245 29-48 (92)
31 PRK14430 acylphosphatase; Prov 36.5 27 0.00059 26.4 2.0 19 227-245 29-47 (92)
32 PRK11181 23S rRNA (guanosine-2 36.4 1.9E+02 0.004 25.7 7.7 75 68-152 54-133 (244)
33 COG0279 GmhA Phosphoheptose is 36.4 41 0.00088 28.8 3.2 64 82-156 82-152 (176)
34 cd04321 ScAspRS_mt_like_N ScAs 35.9 42 0.0009 24.6 2.9 22 228-249 2-25 (86)
35 KOG3060 Uncharacterized conser 35.5 76 0.0016 29.1 5.0 55 2-62 98-152 (289)
36 PRK14440 acylphosphatase; Prov 35.4 30 0.00066 26.0 2.1 20 226-245 27-46 (90)
37 PRK14445 acylphosphatase; Prov 35.2 32 0.0007 25.8 2.3 20 226-245 28-47 (91)
38 cd01891 TypA_BipA TypA (tyrosi 35.1 25 0.00055 29.3 1.8 15 139-153 1-15 (194)
39 cd03548 Rieske_RO_Alpha_OMO_CA 35.0 19 0.00042 28.9 1.1 17 229-245 77-93 (136)
40 TIGR02377 MocE_fam_FeS Rieske 34.7 16 0.00035 27.7 0.5 14 229-242 63-76 (101)
41 KOG1127 TPR repeat-containing 33.6 85 0.0018 34.0 5.6 24 2-25 14-37 (1238)
42 TIGR02378 nirD_assim_sml nitri 33.4 15 0.00034 27.8 0.2 15 229-243 68-82 (105)
43 PRK11440 putative hydrolase; P 33.1 85 0.0019 26.2 4.8 47 99-155 90-136 (188)
44 cd03529 Rieske_NirD Assimilato 32.4 16 0.00035 27.7 0.2 13 230-242 68-80 (103)
45 PRK14451 acylphosphatase; Prov 32.1 36 0.00077 25.6 2.0 20 227-246 28-47 (89)
46 cd02682 MIT_AAA_Arch MIT: doma 32.0 39 0.00084 24.9 2.1 22 4-25 27-48 (75)
47 cd03473 Rieske_CMP_Neu5Ac_hydr 31.9 17 0.00037 28.6 0.3 16 228-243 70-85 (107)
48 PRK14429 acylphosphatase; Prov 31.7 40 0.00087 25.3 2.3 19 227-245 27-45 (90)
49 PF04019 DUF359: Protein of un 31.2 1.7E+02 0.0037 23.4 5.9 76 75-158 6-81 (121)
50 PRK14448 acylphosphatase; Prov 30.9 38 0.00081 25.5 2.0 19 227-245 27-45 (90)
51 COG2146 {NirD} Ferredoxin subu 30.8 20 0.00043 27.8 0.5 14 229-242 67-80 (106)
52 PRK09511 nirD nitrite reductas 30.3 19 0.0004 28.0 0.2 14 229-242 71-84 (108)
53 COG1116 TauB ABC-type nitrate/ 30.1 29 0.00063 31.3 1.4 14 140-153 29-42 (248)
54 PF02983 Pro_Al_protease: Alph 29.8 71 0.0015 22.3 3.1 23 226-248 21-43 (62)
55 PRK09965 3-phenylpropionate di 29.5 21 0.00045 27.3 0.4 14 229-242 63-76 (106)
56 PRK14426 acylphosphatase; Prov 29.4 45 0.00096 25.2 2.2 19 227-245 29-47 (92)
57 PRK14441 acylphosphatase; Prov 29.4 49 0.0011 25.0 2.4 20 226-245 29-48 (93)
58 PF10083 DUF2321: Uncharacteri 29.3 1.1E+02 0.0024 25.8 4.6 36 7-42 82-117 (158)
59 PF07719 TPR_2: Tetratricopept 29.2 41 0.00089 19.2 1.6 19 3-21 14-32 (34)
60 PRK14066 exodeoxyribonuclease 28.7 50 0.0011 24.2 2.2 20 1-20 1-20 (75)
61 PRK14449 acylphosphatase; Prov 28.4 51 0.0011 24.7 2.3 19 227-245 28-46 (90)
62 PRK14425 acylphosphatase; Prov 28.3 49 0.0011 25.1 2.3 19 227-245 31-49 (94)
63 cd03530 Rieske_NirD_small_Baci 28.3 19 0.0004 26.9 -0.1 14 229-242 62-75 (98)
64 PF09976 TPR_21: Tetratricopep 28.2 1.2E+02 0.0026 24.0 4.7 48 3-53 61-108 (145)
65 PRK14436 acylphosphatase; Prov 28.1 51 0.0011 24.8 2.3 20 227-246 29-48 (91)
66 cd03474 Rieske_T4moC Toluene-4 28.0 24 0.00052 26.8 0.5 14 229-242 62-75 (108)
67 PRK14434 acylphosphatase; Prov 27.8 55 0.0012 24.7 2.5 20 226-245 26-46 (92)
68 cd01890 LepA LepA subfamily. 27.7 35 0.00075 27.5 1.4 13 141-153 1-13 (179)
69 PRK14420 acylphosphatase; Prov 27.7 51 0.0011 24.7 2.2 19 227-245 27-45 (91)
70 PRK13730 conjugal transfer pil 27.6 76 0.0017 27.9 3.5 23 66-89 149-171 (212)
71 PRK14064 exodeoxyribonuclease 27.6 53 0.0011 24.1 2.2 21 1-21 1-23 (75)
72 PRK14444 acylphosphatase; Prov 27.4 50 0.0011 24.9 2.1 20 226-245 28-47 (92)
73 PF00708 Acylphosphatase: Acyl 27.3 50 0.0011 24.5 2.1 20 227-246 29-48 (91)
74 PF05952 ComX: Bacillus compet 27.3 64 0.0014 22.5 2.5 25 209-233 5-29 (57)
75 PF00561 Abhydrolase_1: alpha/ 27.3 59 0.0013 26.6 2.8 30 125-155 28-57 (230)
76 PRK14446 acylphosphatase; Prov 27.3 58 0.0013 24.5 2.5 21 226-246 26-46 (88)
77 PRK14067 exodeoxyribonuclease 27.2 47 0.001 24.7 1.9 19 3-21 6-24 (80)
78 PF10500 SR-25: Nuclear RNA-sp 26.9 25 0.00055 31.2 0.5 42 209-251 150-192 (225)
79 cd01878 HflX HflX subfamily. 25.9 46 0.00099 27.8 1.9 16 138-153 39-54 (204)
80 PRK14422 acylphosphatase; Prov 25.8 55 0.0012 24.8 2.1 20 226-245 30-49 (93)
81 PRK14443 acylphosphatase; Prov 25.5 63 0.0014 24.6 2.4 21 226-246 28-48 (93)
82 KOG0554 Asparaginyl-tRNA synth 25.4 60 0.0013 31.4 2.7 82 3-106 293-374 (446)
83 PRK14435 acylphosphatase; Prov 24.9 59 0.0013 24.4 2.1 20 227-246 27-46 (90)
84 PRK14433 acylphosphatase; Prov 24.7 60 0.0013 24.2 2.1 21 226-246 25-45 (87)
85 PRK14424 acylphosphatase; Prov 24.5 59 0.0013 24.7 2.1 20 227-246 32-51 (94)
86 KOG1466 Translation initiation 24.4 1.8E+02 0.0038 26.9 5.3 52 3-55 7-58 (313)
87 cd04167 Snu114p Snu114p subfam 24.4 43 0.00094 28.5 1.5 13 141-153 1-13 (213)
88 PF02100 ODC_AZ: Ornithine dec 24.2 73 0.0016 24.9 2.6 29 125-153 41-69 (108)
89 cd04318 EcAsnRS_like_N EcAsnRS 24.1 1.2E+02 0.0026 21.7 3.6 20 228-247 2-22 (82)
90 cd04160 Arfrp1 Arfrp1 subfamil 24.0 43 0.00093 26.5 1.3 12 142-153 1-12 (167)
91 cd01887 IF2_eIF5B IF2/eIF5B (i 23.9 49 0.0011 26.1 1.6 13 141-153 1-13 (168)
92 cd03467 Rieske Rieske domain; 23.8 28 0.0006 25.8 0.1 14 229-242 62-75 (98)
93 PF01764 Lipase_3: Lipase (cla 23.7 99 0.0021 23.8 3.4 31 127-157 50-80 (140)
94 cd04169 RF3 RF3 subfamily. Pe 23.5 52 0.0011 29.6 1.9 15 140-154 2-16 (267)
95 PRK14437 acylphosphatase; Prov 23.4 60 0.0013 25.5 2.0 20 227-246 48-67 (109)
96 TIGR00186 rRNA_methyl_3 rRNA m 23.4 3.4E+02 0.0074 23.8 7.1 73 68-150 49-126 (237)
97 PRK14427 acylphosphatase; Prov 23.2 75 0.0016 24.1 2.4 20 226-245 30-49 (94)
98 PRK14068 exodeoxyribonuclease 23.1 70 0.0015 23.5 2.2 19 3-21 5-23 (76)
99 PRK14452 acylphosphatase; Prov 22.7 65 0.0014 25.2 2.0 19 227-245 45-63 (107)
100 PRK14438 acylphosphatase; Prov 22.4 77 0.0017 23.8 2.3 20 226-245 27-46 (91)
101 cd01012 YcaC_related YcaC rela 22.3 1.1E+02 0.0025 24.7 3.6 45 102-156 60-104 (157)
102 PF12688 TPR_5: Tetratrico pep 22.3 2.7E+02 0.0058 22.0 5.6 48 5-55 53-100 (120)
103 PF00515 TPR_1: Tetratricopept 22.0 97 0.0021 17.8 2.3 20 3-22 14-33 (34)
104 PRK12822 phospho-2-dehydro-3-d 21.8 1.7E+02 0.0036 28.0 4.9 21 3-23 114-136 (356)
105 PRK14421 acylphosphatase; Prov 21.8 75 0.0016 24.5 2.2 20 227-246 29-48 (99)
106 cd03531 Rieske_RO_Alpha_KSH Th 21.5 47 0.001 25.8 1.1 16 229-245 63-78 (115)
107 PRK14447 acylphosphatase; Prov 21.3 1E+02 0.0023 23.3 2.9 19 226-244 28-47 (95)
108 PF09673 TrbC_Ftype: Type-F co 21.2 2.6E+02 0.0056 21.7 5.2 23 66-89 58-80 (113)
109 PF11910 NdhO: Cyanobacterial 21.2 73 0.0016 22.9 1.8 21 88-110 22-42 (67)
110 PF13174 TPR_6: Tetratricopept 21.1 94 0.002 17.4 2.1 17 4-20 14-30 (33)
111 KOG4780 Uncharacterized conser 20.9 48 0.0011 32.2 1.2 33 87-119 390-422 (467)
112 cd01015 CSHase N-carbamoylsarc 20.8 1.7E+02 0.0038 24.1 4.5 40 100-149 84-123 (179)
113 smart00546 CUE Domain that may 20.7 1.2E+02 0.0027 19.0 2.8 40 7-56 3-42 (43)
114 cd01897 NOG NOG1 is a nucleola 20.5 64 0.0014 25.6 1.7 13 141-153 1-13 (168)
115 PRK00977 exodeoxyribonuclease 20.2 86 0.0019 23.2 2.2 20 2-21 8-27 (80)
116 TIGR03736 PRTRC_ThiF PRTRC sys 20.2 1.6E+02 0.0035 26.4 4.3 31 216-246 212-242 (244)
117 PRK14428 acylphosphatase; Prov 20.1 92 0.002 23.9 2.4 20 227-246 33-52 (97)
No 1
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=4.2e-70 Score=496.86 Aligned_cols=256 Identities=79% Similarity=1.265 Sum_probs=227.0
Q ss_pred CCchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcC
Q 025161 1 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKG 78 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~g 78 (257)
|+|.|||+||++|||+++|++|+.++++++++++|++|++.+ .+++++++++|++||++|+...+..++.+|++++.|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~g 152 (330)
T PLN03019 73 MGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKG 152 (330)
T ss_pred HhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhccC
Confidence 789999999999999999999999999999999999999743 256899999999999999998888899999999999
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025161 79 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 158 (257)
Q Consensus 79 q~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~ 158 (257)
|+|+++||+||||||+|+.|||.+|||+||+||+||+|+++|...++++++|||||+.+|||++|||||||+||||+|++
T Consensus 153 Q~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 153 QSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred CCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 99999999999999999999999999999999999999997754445788999999999999999999999999999998
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEcc
Q 025161 159 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 238 (257)
Q Consensus 159 ~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~ 238 (257)
+....+....++|..|+..+.|++..+....+...+.+.+..++ .||+.|+++|+++|+|++++++|+|.||||+||++
T Consensus 233 ~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E-~NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~ 311 (330)
T PLN03019 233 SFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCE-RAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFV 311 (330)
T ss_pred hccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECC
Confidence 75444434567899999998888866543333333344333344 59999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCCCC
Q 025161 239 NGSFELWGLDFSLSPPLSV 257 (257)
Q Consensus 239 tG~v~~~~~~~~~~~~~~~ 257 (257)
||+|++++.++++|||.|+
T Consensus 312 TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 312 NGSFELWELQFGISPVHSI 330 (330)
T ss_pred CceEEEEccccCcCCCCcC
Confidence 9999999999999999874
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.6e-70 Score=498.81 Aligned_cols=257 Identities=80% Similarity=1.266 Sum_probs=231.4
Q ss_pred CCchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCC--CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcC
Q 025161 1 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD--TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKG 78 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~g 78 (257)
|++.||||||++|||+++|++|++++++++++++|++|++.++ +.+++++++|++||+||++..+..++.+|++++.|
T Consensus 78 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~G 157 (347)
T PLN03014 78 MGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKG 157 (347)
T ss_pred hchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccC
Confidence 8999999999999999999999999999999999999997432 56899999999999999999888899999999999
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025161 79 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 158 (257)
Q Consensus 79 q~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~ 158 (257)
|+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|...+++++++||||+.+|+|++|||||||+||||+|++
T Consensus 158 Q~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 158 QSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred CCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999997654344688999999999999999999999999999998
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEcc
Q 025161 159 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 238 (257)
Q Consensus 159 ~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~ 238 (257)
+....+....++|..|+..+.|++.......+..++.+.+..++++||++||++|+++|+|++++++|+|.||||+||++
T Consensus 238 ~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~ 317 (347)
T PLN03014 238 SFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFV 317 (347)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECC
Confidence 75433434467899999998998876555444445556666677899999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCCCC
Q 025161 239 NGSFELWGLDFSLSPPLSV 257 (257)
Q Consensus 239 tG~v~~~~~~~~~~~~~~~ 257 (257)
||+|++++.+++.||+.++
T Consensus 318 TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 318 KGAFELWGLEFGLSETSSV 336 (347)
T ss_pred CceEEEeccccccCCcccc
Confidence 9999999999999999875
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=9.6e-66 Score=459.42 Aligned_cols=253 Identities=62% Similarity=1.062 Sum_probs=223.4
Q ss_pred CCchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 025161 1 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 80 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~ 80 (257)
||..||+.+|.+|.++++.+++.++.++.+....++.|++.+ .+|.++|++|++||+||+.+.+..++.+|+.++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 888999999999999999999999999999999999999976 6799999999999999999988888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 025161 81 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 160 (257)
Q Consensus 81 P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~ 160 (257)
|+++|||||||||+|+.|||++|||+||+||+||+|+++|....+++++|||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999998765333568899999999999999999999999999998763
Q ss_pred cCCC-CCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccC
Q 025161 161 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 239 (257)
Q Consensus 161 ~~~~-~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~t 239 (257)
.... ....+++..|+..+.|+...........++.+.+..++++||++|+++|+++|+|++++++|++.||||+||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 2221 122467999999888887654433333344444456778999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCC
Q 025161 240 GSFELWGLDFSLSPP 254 (257)
Q Consensus 240 G~v~~~~~~~~~~~~ 254 (257)
|+|++++++..-+|-
T Consensus 240 G~v~~~~~~~~~~p~ 254 (258)
T PLN00416 240 GTFDLWELDFKTTPA 254 (258)
T ss_pred ceEEEeccCcCCCCC
Confidence 999999999888874
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.6e-59 Score=424.25 Aligned_cols=238 Identities=42% Similarity=0.775 Sum_probs=206.9
Q ss_pred HHhhhccCCchhhhhhhHHHHHhhcCCCC--CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCC
Q 025161 15 KLLKEKEDLKPVAAAKVEQITAQLQTPSD--TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSR 92 (257)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSR 92 (257)
++-+..-++...|+.+++++|++|++... +.|.+.+++|++||.+|...++..++++|++|+.||+|+++||+|||||
T Consensus 45 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSR 124 (301)
T PLN03006 45 SFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSR 124 (301)
T ss_pred cccccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCC
Confidence 45566778889999999999999987653 3478999999999999999999899999999999999999999999999
Q ss_pred CChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHH
Q 025161 93 VCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIE 172 (257)
Q Consensus 93 v~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~ 172 (257)
|+|+.|||++|||+||+||+||+|+|++... .++++|||||+.+|+|++|||||||+||||+|+++....+ ...++|.
T Consensus 125 V~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~ 202 (301)
T PLN03006 125 VCPSAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIH 202 (301)
T ss_pred CCHHHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHH
Confidence 9999999999999999999999999876432 4588999999999999999999999999999988754433 3457899
Q ss_pred HHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCC
Q 025161 173 DWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLS 252 (257)
Q Consensus 173 ~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~~~~~~~~ 252 (257)
.|+..+.|++..+........+.+++..++++||++|+++|++||+|++++++|+|.||||+||+.||+++.++.+++.|
T Consensus 203 ~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~ 282 (301)
T PLN03006 203 NWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAAS 282 (301)
T ss_pred HHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccccc
Confidence 99987777765543322233455566678889999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 025161 253 PP 254 (257)
Q Consensus 253 ~~ 254 (257)
.+
T Consensus 283 ~~ 284 (301)
T PLN03006 283 RG 284 (301)
T ss_pred cc
Confidence 53
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.7e-54 Score=378.91 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhH
Q 025161 49 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 128 (257)
Q Consensus 49 ~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~ 128 (257)
.+++|++||++|++..+..++++|+.++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. +++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5789999999999988888899999999999999999999999999999999999999999999999998654 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHH
Q 025161 129 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNV 208 (257)
Q Consensus 129 asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~ 208 (257)
++||||+.+|||++|||||||+||||+|+++.. ..+++..|+..+.|+...........+..+..+.++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 236799999988887755333223333345567788999999
Q ss_pred HHHHHhcChhHHhhhhCC-ceEEEEEEEEccCCeEEEEeccCCCCC
Q 025161 209 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLSP 253 (257)
Q Consensus 209 qv~~L~~~p~I~~~~~~g-~l~V~G~vYDi~tG~v~~~~~~~~~~~ 253 (257)
|+++|+++|+|++++++| +|.||||+||++||+|+.++......+
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 999999999999999999 699999999999999999987665443
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-54 Score=372.84 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=163.3
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCc-cchhhHHHHHHH
Q 025161 56 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 134 (257)
Q Consensus 56 GN~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~-~~~~~~asLeyA 134 (257)
||++|++..++.++++|++++.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++++.+ .++++++|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888888999999999999999999999999999999999999999999999999986432 234688999999
Q ss_pred HHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHh
Q 025161 135 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 214 (257)
Q Consensus 135 v~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 214 (257)
+.+|+|++|||||||+||||+|+++... +....+.+..|+..+.|+........+..+..+..+.+++.||++|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886432 123356899999998888766544332233344556788999999999999
Q ss_pred cChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 025161 215 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 215 ~~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~ 245 (257)
++|+|++++++|+|+||||+||++||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 7
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=369.98 Aligned_cols=198 Identities=32% Similarity=0.494 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchh
Q 025161 48 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 126 (257)
Q Consensus 48 ~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~-~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~ 126 (257)
..++.|++||++|+++.++..+.+|+.+. .+|+|+++|||||||||+||.+|+++|||+||+|||||+|++++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 47899999999999998888889998876 569999999999999999999999999999999999999998653 5
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcc-cccchHHHHH
Q 025161 127 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEA 205 (257)
Q Consensus 127 ~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 205 (257)
+++|||||+.+|||++|||||||+||||+|+++....+.. .+..|+..+.+.........+..... ++.....+.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999876544322 58899977666554333322221221 4455667899
Q ss_pred HHHHHHHHhcChhHHhhhhCCc-eEEEEEEEEccCCeEEEEeccCCCC
Q 025161 206 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLS 252 (257)
Q Consensus 206 V~~qv~~L~~~p~I~~~~~~g~-l~V~G~vYDi~tG~v~~~~~~~~~~ 252 (257)
|++||++|+++|.|+.++..++ |.||||+||++||+++.++.....-
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~ 202 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDF 202 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEecccccc
Confidence 9999999999999999998877 9999999999999999888766443
No 8
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=2.4e-53 Score=377.24 Aligned_cols=190 Identities=22% Similarity=0.333 Sum_probs=161.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCC
Q 025161 43 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 119 (257)
Q Consensus 43 ~~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~---~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~ 119 (257)
.++|+++|++|++||+||+++.+. .++++ .+++.||+|+++|||||||||+||.+||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 379999999999999999998764 34433 2357899999999999999999999999999999999999999975
Q ss_pred CCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhc-CCCCccccc
Q 025161 120 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 198 (257)
Q Consensus 120 d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~-~~~~~~~~~ 198 (257)
++++|||||+.+|||++|||||||+||||+|+++.. ..+++..|++.+.|+........ ...+..+..
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 267899999999999999999999999999998643 23579999999888876542211 111223455
Q ss_pred chHHHHHHHHHHHHHhc-ChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 025161 199 TYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 199 ~~~~~~nV~~qv~~L~~-~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~ 245 (257)
+.++++||+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 67789999999999986 799999999999999999999999999987
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-53 Score=364.51 Aligned_cols=180 Identities=31% Similarity=0.502 Sum_probs=155.6
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHH
Q 025161 57 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 136 (257)
Q Consensus 57 N~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~ 136 (257)
|++|++..+.+.|.+|++++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. ++.+|||||+.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999989999999999999999999999999999999999999999999999999998654 47899999999
Q ss_pred hcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCC-CcccccchHHHHHHHHHHHHHhc
Q 025161 137 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLT 215 (257)
Q Consensus 137 ~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~ 215 (257)
+|||++|||||||+||||+|+++.. ..+.+..|+..+.++........... +..+..+.++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 23679999988777654332222111 22334556789999999999999
Q ss_pred ChhHHhhhhC-CceEEEEEEEEccCCeEEEE
Q 025161 216 YPFVREGLVN-KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 216 ~p~I~~~~~~-g~l~V~G~vYDi~tG~v~~~ 245 (257)
+|+|++++++ |+|.||||+||++||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999999753
No 10
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=9.5e-53 Score=378.16 Aligned_cols=205 Identities=41% Similarity=0.753 Sum_probs=173.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccc
Q 025161 45 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 124 (257)
Q Consensus 45 ~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~ 124 (257)
+..+.|++|++||++|....+..++.+|+.|+.||+|+++|||||||||+|+.|||.+|||+||+||+||+|++++.. .
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 455779999999999999999999999999999999999999999999999999999999999999999999987532 2
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHH
Q 025161 125 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKE 204 (257)
Q Consensus 125 ~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~ 204 (257)
.++++|||||+.+|+|++|||||||+||||+|+++.........+++..|+..+.++........+...+.+.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999986432222334689999987665543322111222334445567789
Q ss_pred HHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCC
Q 025161 205 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 250 (257)
Q Consensus 205 nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~~~~~~ 250 (257)
||+.|+++|+++|+|++++++|+|+||||+||+.||+|+.++...+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999988763
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-48 Score=324.85 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCc
Q 025161 46 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 122 (257)
Q Consensus 46 p~~~l~~Ll~GN~rf~~~~~~~---~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~ 122 (257)
|++++++|++||++|.+++... .+.+|..+..+|+|+++||||||||++|+.+|+.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 6789999999999999875421 255688899999999999999999999999999999999999999999976
Q ss_pred cchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHH
Q 025161 123 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 202 (257)
Q Consensus 123 ~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~ 202 (257)
++++||+||+.+|||++|||||||+||+++++ +.
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37799999999999999999999999998863 24
Q ss_pred HHHHHHHHHHHhcChhHHh-hhhCCceEEEEEEEEccCCeEEEE
Q 025161 203 KEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 203 ~~nV~~qv~~L~~~p~I~~-~~~~g~l~V~G~vYDi~tG~v~~~ 245 (257)
++||+.|+++|+++|+|++ ++++|+++||||+||++||+|+++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6899999999999999888 999999999999999999999874
No 12
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.2e-44 Score=300.23 Aligned_cols=152 Identities=34% Similarity=0.564 Sum_probs=120.8
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC
Q 025161 83 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 162 (257)
Q Consensus 83 ~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~ 162 (257)
++||||||||++|+.+|+.+|||+||+||+||+|++.+ .++++||+||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 68999999999999999999999999999999998764 36889999999999999999999999999998765321
Q ss_pred CCCCCchhHHHHHHhccchhhhhhhhc-CCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCe
Q 025161 163 DGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 241 (257)
Q Consensus 163 ~~~~~~~~i~~~l~~~~pa~~~~~~~~-~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~tG~ 241 (257)
..+.+++|+..+.|+......+. ............+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34679999998888765522221 1111112223347899999999999999999999999999999999999998
Q ss_pred E
Q 025161 242 F 242 (257)
Q Consensus 242 v 242 (257)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8.1e-43 Score=279.32 Aligned_cols=119 Identities=42% Similarity=0.743 Sum_probs=111.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025161 79 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 158 (257)
Q Consensus 79 q~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~ 158 (257)
|+|+++||||||||++|+.+|+.+|||+||+||+||+|++.+. ++++||+||+..||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7999999999999999999999999999999999999987643 5889999999999999999999999999874
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEcc
Q 025161 159 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 238 (257)
Q Consensus 159 ~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~ 238 (257)
..++||++|+++|+++|+++++++.+++.||||+||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 23679999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 025161 239 NGSFELW 245 (257)
Q Consensus 239 tG~v~~~ 245 (257)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999864
No 14
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-43 Score=310.22 Aligned_cols=236 Identities=49% Similarity=0.813 Sum_probs=216.4
Q ss_pred CCchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 025161 1 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 80 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~ 80 (257)
|...+|+.+++.+.+++..+.++ +++.+++.++++ .+.++++.++|-.|.++.+..+|.+|..++++|+
T Consensus 25 mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qs 93 (276)
T KOG1578|consen 25 MPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQS 93 (276)
T ss_pred CCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhHhhhccccCCCChhhhHHHhccCC
Confidence 56789999999999999999999 899999999883 4578999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 025161 81 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 160 (257)
Q Consensus 81 P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~ 160 (257)
|+.+||+|+|||+.|+.|++.+|||.|++||++|+++|.|......+.|+|||+|.+|+|++|+||||++|||+++++..
T Consensus 94 p~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~ 173 (276)
T KOG1578|consen 94 PEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSF 173 (276)
T ss_pred CcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccc
Confidence 99999999999999999999999999999999999999877666678899999999999999999999999999999887
Q ss_pred cCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCC
Q 025161 161 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 240 (257)
Q Consensus 161 ~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~tG 240 (257)
..++. ...++..|.....+++..+..+.....+.+++..++.+.+..++.+|.+||++++++..|.+.+||++||+..|
T Consensus 174 ~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg 252 (276)
T KOG1578|consen 174 SLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKG 252 (276)
T ss_pred cccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeeeeeEEeccC
Confidence 66554 67789999887777777777766677888888899999999999999999999999999999999999999999
Q ss_pred eEEEEecc
Q 025161 241 SFELWGLD 248 (257)
Q Consensus 241 ~v~~~~~~ 248 (257)
..+++..+
T Consensus 253 ~~~~~~ld 260 (276)
T KOG1578|consen 253 TKEFWELD 260 (276)
T ss_pred ceeEEEec
Confidence 99999999
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.6e-40 Score=270.39 Aligned_cols=142 Identities=23% Similarity=0.276 Sum_probs=112.6
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025161 79 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 158 (257)
Q Consensus 79 q~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~ 158 (257)
+.++++||||||||++|+.+||.+|||+||+|||||+|++ ++++||+||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3678999999999999999999999999999999999986 377999999999999999999999999999864
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEcc
Q 025161 159 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 238 (257)
Q Consensus 159 ~~~~~~~~~~~~i~~~l~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~~~~g~l~V~G~vYDi~ 238 (257)
+ .+..|+.......... . . ............++||++|+++|+++|+|+ .+++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~-----~~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYG-G-I-DKEFWFLGFDDLEESVREDVERIRNHPLIP-----DDVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhc-c-c-CcchhhcccccHHHHHHHHHHHHHhCcCcc-----CCCEEEEEEEECC
Confidence 3 2556765321111000 0 0 011111122356899999999999999999 4899999999999
Q ss_pred CCeEEEE
Q 025161 239 NGSFELW 245 (257)
Q Consensus 239 tG~v~~~ 245 (257)
||+|+.+
T Consensus 136 tG~v~~v 142 (142)
T cd03379 136 TGKLTEV 142 (142)
T ss_pred CCEEEeC
Confidence 9999753
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.7e-08 Score=90.38 Aligned_cols=190 Identities=21% Similarity=0.244 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEecccccC
Q 025161 53 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 116 (257)
Q Consensus 53 Ll~GN~rf~~~~~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~i----------------f~~~~GdlFVvRNaGN~V 116 (257)
|+.|-.||+...... +.+++...++|.+...+|+|||+-|... +....||.|++||.||.+
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677788888765432 2256777889999999999999999877 677899999999999999
Q ss_pred CCCCCcc-----chhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC-----CCCCCchhHHHHHHhccc------
Q 025161 117 PPYDQTK-----YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF-----DGNNSTDFIEDWVKIGIP------ 180 (257)
Q Consensus 117 ~~~d~~~-----~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a~~~~~~-----~~~~~~~~i~~~l~~~~p------ 180 (257)
+....-. .+--...|+.|+......+|++|||++|-+++...+... ......+.++-|+....-
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 8642100 000113567777778889999999999999997543221 111122468888753210
Q ss_pred ---hhhhhh------hhcCCCCccc-cc-----------chHHHHHHHHHHHHHhcChhHH--hhhhCCceEEEE--EEE
Q 025161 181 ---AKSKVL------TEHGDKPFGD-QC-----------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--GYY 235 (257)
Q Consensus 181 ---a~~~~~------~~~~~~~~~~-~~-----------~~~~~~nV~~qv~~L~~~p~I~--~~~~~g~l~V~G--~vY 235 (257)
...... ...+..+|.+ |. ..+.+.|..+|..|..++.+.. .++......+++ .+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 000000 0001111211 10 1223456788988888777766 556666666666 556
Q ss_pred EccCCeEEEE
Q 025161 236 DFVNGSFELW 245 (257)
Q Consensus 236 Di~tG~v~~~ 245 (257)
+.-.|..+.+
T Consensus 240 l~~~G~~Y~f 249 (276)
T KOG1578|consen 240 LQVHGGYYNF 249 (276)
T ss_pred eeeeeeeEEe
Confidence 6666655444
No 17
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=79.23 E-value=6.1 Score=32.12 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=37.7
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcC
Q 025161 65 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 139 (257)
Q Consensus 65 ~~~~~~~~~~l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~ 139 (257)
..-+|.+|++....+-| ++|+.|.+..+..+.. ..+++-. +..||+ ||+||++.+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc--------------cHHHHHHHHH
Confidence 34589999999888888 6888898875555433 3444543 334665 6788877643
No 18
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=71.22 E-value=9.6 Score=39.88 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=28.0
Q ss_pred HHhcChhHHhhhhCC------ceEEEEEEEEccCCeEEEEeccC
Q 025161 212 NLLTYPFVREGLVNK------TLALKGGYYDFVNGSFELWGLDF 249 (257)
Q Consensus 212 ~L~~~p~I~~~~~~g------~l~V~G~vYDi~tG~v~~~~~~~ 249 (257)
.|...|-||+.+++. +...+|+..|.-|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 344556666666554 44579999999999999998775
No 19
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=68.07 E-value=4.4 Score=30.98 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred CceEEEEEEEEccCCeEEEEe
Q 025161 226 KTLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~~ 246 (257)
.++.|+||+++..+|.|+.+-
T Consensus 28 ~~lgl~G~V~N~~DGsVeiva 48 (92)
T COG1254 28 LRLGLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred HHCCCEEEEEECCCCeEEEEE
Confidence 357799999999999998654
No 20
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.54 E-value=25 Score=23.69 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCC
Q 025161 2 ANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP 41 (257)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (257)
.++.|++|++.+++++....+... .........++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g 39 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPE---ARLLLAQCYLKQG 39 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHcC
Confidence 468899999999999999888776 4445555555553
No 21
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=56.17 E-value=32 Score=21.86 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 025161 6 YEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 57 (257)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~GN 57 (257)
|++.++.|+++|- ....+.++....+... ....+++.|++++
T Consensus 1 ~~~~v~~L~~mFP------~~~~~~I~~~L~~~~~----~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 1 REEMVQQLQEMFP------DLDREVIEAVLQANNG----DVEAAIDALLEMS 42 (42)
T ss_dssp CHHHHHHHHHHSS------SS-HHHHHHHHHHTTT----THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC------CCCHHHHHHHHHHcCC----CHHHHHHHHHcCC
Confidence 4678889998884 3334666665544433 5688999999875
No 22
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=46.49 E-value=7.8 Score=28.72 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=12.5
Q ss_pred EEEEEEEccCCeEE
Q 025161 230 LKGGYYDFVNGSFE 243 (257)
Q Consensus 230 V~G~vYDi~tG~v~ 243 (257)
.|||.||++||++.
T Consensus 66 ~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 66 CHGWRFDLDTGECV 79 (97)
T ss_dssp TTTEEEETTTSBEE
T ss_pred CcCCEEeCCCceEe
Confidence 69999999999864
No 23
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.57 E-value=44 Score=34.39 Aligned_cols=22 Identities=0% Similarity=0.101 Sum_probs=15.0
Q ss_pred ceEEEEEEEEccCCeEEEEecc
Q 025161 227 TLALKGGYYDFVNGSFELWGLD 248 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~~~ 248 (257)
+.....+..+..|-++.+++..
T Consensus 623 dt~FaaalHnTTtdelh~~dv~ 644 (880)
T COG3002 623 DTVFAAALHNTTTDELHWFDVP 644 (880)
T ss_pred cceeeeccccCchhheeeeehh
Confidence 3445666777777888877765
No 24
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=41.00 E-value=13 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=23.5
Q ss_pred HHH-hcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCC
Q 025161 211 SNL-LTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSL 251 (257)
Q Consensus 211 ~~L-~~~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~~~~~~~ 251 (257)
+.| ++||+++.+++. |..+|+.||+++.++..-++
T Consensus 138 ~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~ 173 (202)
T PF01707_consen 138 RELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNL 173 (202)
T ss_dssp HHHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--
T ss_pred HHHHHhCchhhhcccc------CeeEeecCCceecCCCcccc
Confidence 445 689999988766 66899999999887766654
No 25
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=40.62 E-value=14 Score=24.97 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.1
Q ss_pred EEEEEEccCCeEE
Q 025161 231 KGGYYDFVNGSFE 243 (257)
Q Consensus 231 ~G~vYDi~tG~v~ 243 (257)
-|.-|||+||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4889999999874
No 26
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=39.66 E-value=11 Score=27.92 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.9
Q ss_pred EEEEEEEEccCCeEE
Q 025161 229 ALKGGYYDFVNGSFE 243 (257)
Q Consensus 229 ~V~G~vYDi~tG~v~ 243 (257)
..|||.||++||++.
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 479999999999864
No 27
>PRK14432 acylphosphatase; Provisional
Probab=39.26 E-value=23 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=17.1
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.++.+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 47799999999999988654
No 28
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=38.06 E-value=11 Score=28.09 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.7
Q ss_pred EEEEEEEEccCCeEE
Q 025161 229 ALKGGYYDFVNGSFE 243 (257)
Q Consensus 229 ~V~G~vYDi~tG~v~ 243 (257)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 369999999999754
No 29
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=37.60 E-value=21 Score=29.74 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.8
Q ss_pred CcceEEEeccCCCCc
Q 025161 139 KVSNIVVIGHSACGG 153 (257)
Q Consensus 139 ~v~~IVV~GHt~CGa 153 (257)
.+..|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999994
No 30
>PRK14423 acylphosphatase; Provisional
Probab=36.71 E-value=32 Score=25.96 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.0
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+.++.+|.|+.+
T Consensus 29 ~~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 29 RELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HHcCCEEEEEECCCCeEEEE
Confidence 35789999999999998754
No 31
>PRK14430 acylphosphatase; Provisional
Probab=36.53 E-value=27 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.1
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.++.+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4678999999999988753
No 32
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=36.43 E-value=1.9e+02 Score=25.70 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=41.1
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCCC-CceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcce
Q 025161 68 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQP-GEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 142 (257)
Q Consensus 68 ~~~~~~~l~~gq~P~~~vItCsDSRv----~pe~if~~~~-GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~ 142 (257)
.+..+.+++..++|.=++.-|...+. +.+.++.... +-++++=+ +-.| .++ ++|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~---v~dp------~Nl-Gai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDG---VTDP------HNL-GACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcC---CCCc------chH-HHHHHHHHHcCCCE
Confidence 45567788877777655555554332 2233333222 22333321 1111 123 35555777899999
Q ss_pred EEEeccCCCC
Q 025161 143 IVVIGHSACG 152 (257)
Q Consensus 143 IVV~GHt~CG 152 (257)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887544
No 33
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=36.39 E-value=41 Score=28.77 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=44.5
Q ss_pred cEEEEeecCCCCChhhhcC------CCCCceEE-EecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 025161 82 KYMVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 154 (257)
Q Consensus 82 ~~~vItCsDSRv~pe~if~------~~~GdlFV-vRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav 154 (257)
...++||.=--...+.+|. -.+||+++ +-+-||-- .++.+++.|. .+|+..|...|-++ |.+
T Consensus 82 dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~G-G~~ 150 (176)
T COG0279 82 DSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKDG-GKL 150 (176)
T ss_pred ccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCCC-ccc
Confidence 4456778777777788883 36999764 78888763 3778888765 57888888777643 444
Q ss_pred cc
Q 025161 155 KG 156 (257)
Q Consensus 155 ~a 156 (257)
+.
T Consensus 151 ~~ 152 (176)
T COG0279 151 AG 152 (176)
T ss_pred cc
Confidence 43
No 34
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=35.91 E-value=42 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=18.2
Q ss_pred eEEEEEEEEccC--CeEEEEeccC
Q 025161 228 LALKGGYYDFVN--GSFELWGLDF 249 (257)
Q Consensus 228 l~V~G~vYDi~t--G~v~~~~~~~ 249 (257)
+.|+||++.+.. |++.|+++.-
T Consensus 2 V~v~Gwv~~~R~~~~~~~Fi~LrD 25 (86)
T cd04321 2 VTLNGWIDRKPRIVKKLSFADLRD 25 (86)
T ss_pred EEEEEeEeeEeCCCCceEEEEEEC
Confidence 679999999997 6888887744
No 35
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.46 E-value=76 Score=29.12 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHh
Q 025161 2 ANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKR 62 (257)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~GN~rf~~ 62 (257)
|+.+|.+|||.+.+++.+++-+.- +-++-++ .++..+ .+-++|+.|.+--..|..
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v---~~KRKlA-ilka~G--K~l~aIk~ln~YL~~F~~ 152 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTV---IRKRKLA-ILKAQG--KNLEAIKELNEYLDKFMN 152 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhH---HHHHHHH-HHHHcC--CcHHHHHHHHHHHHHhcC
Confidence 567899999999999987744433 4444333 333333 445788887766666654
No 36
>PRK14440 acylphosphatase; Provisional
Probab=35.40 E-value=30 Score=26.03 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.7
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+.++.+|.|+.+
T Consensus 27 ~~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 27 IRLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HHcCCEEEEEECCCCCEEEE
Confidence 35779999999999988754
No 37
>PRK14445 acylphosphatase; Provisional
Probab=35.17 E-value=32 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+.+..+|.|+.+
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 28 SELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hhCCCEEEEEECCCCeEEEE
Confidence 45789999999999988754
No 38
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=35.09 E-value=25 Score=29.29 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.0
Q ss_pred CcceEEEeccCCCCc
Q 025161 139 KVSNIVVIGHSACGG 153 (257)
Q Consensus 139 ~v~~IVV~GHt~CGa 153 (257)
.+++|+++||++||=
T Consensus 1 ~~r~i~ivG~~~~GK 15 (194)
T cd01891 1 DIRNIAIIAHVDHGK 15 (194)
T ss_pred CccEEEEEecCCCCH
Confidence 367999999999993
No 39
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=34.99 E-value=19 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.4
Q ss_pred EEEEEEEEccCCeEEEE
Q 025161 229 ALKGGYYDFVNGSFELW 245 (257)
Q Consensus 229 ~V~G~vYDi~tG~v~~~ 245 (257)
..|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 37999999999998654
No 40
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=34.69 E-value=16 Score=27.70 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||+.||+.
T Consensus 63 P~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 63 PKHAGCFDYRTGEA 76 (101)
T ss_pred CccCCEEECCCCcc
Confidence 37999999999986
No 41
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=33.62 E-value=85 Score=34.00 Aligned_cols=24 Identities=50% Similarity=0.613 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHhhhccCCch
Q 025161 2 ANQSYEEAIEALKKLLKEKEDLKP 25 (257)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (257)
.|..||||||..||+++++-|.--
T Consensus 14 ~nk~YeealEqskkvLk~dpdNYn 37 (1238)
T KOG1127|consen 14 RNKEYEEALEQSKKVLKEDPDNYN 37 (1238)
T ss_pred hhccHHHHHHHHHHHHhcCCCcch
Confidence 478999999999999999887654
No 42
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=33.35 E-value=15 Score=27.81 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=12.7
Q ss_pred EEEEEEEEccCCeEE
Q 025161 229 ALKGGYYDFVNGSFE 243 (257)
Q Consensus 229 ~V~G~vYDi~tG~v~ 243 (257)
..|||.||++||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 369999999999753
No 43
>PRK11440 putative hydrolase; Provisional
Probab=33.07 E-value=85 Score=26.24 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=31.2
Q ss_pred cCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 025161 99 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 155 (257)
Q Consensus 99 f~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~ 155 (257)
+...+||.++.++--+-.... .|+.-+...|+++|||||=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~T----------~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT----------DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC----------CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 345678887777654444321 35666778999999999965544444
No 44
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=32.40 E-value=16 Score=27.69 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=12.0
Q ss_pred EEEEEEEccCCeE
Q 025161 230 LKGGYYDFVNGSF 242 (257)
Q Consensus 230 V~G~vYDi~tG~v 242 (257)
.|||.||+.||+.
T Consensus 68 ~Hg~~Fdl~tG~~ 80 (103)
T cd03529 68 LYKQHFSLKTGRC 80 (103)
T ss_pred CCCCEEEcCCCCc
Confidence 6999999999986
No 45
>PRK14451 acylphosphatase; Provisional
Probab=32.08 E-value=36 Score=25.59 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.+..+|.|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (89)
T PRK14451 28 QLMISGWARNLADGRVEVFA 47 (89)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999987643
No 46
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.03 E-value=39 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhhhccCCch
Q 025161 4 QSYEEAIEALKKLLKEKEDLKP 25 (257)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (257)
.-|.+|||.|-++++-.-|.++
T Consensus 27 ~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 27 TNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHHhCCChHH
Confidence 4589999999999988777766
No 47
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=31.90 E-value=17 Score=28.60 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=13.5
Q ss_pred eEEEEEEEEccCCeEE
Q 025161 228 LALKGGYYDFVNGSFE 243 (257)
Q Consensus 228 l~V~G~vYDi~tG~v~ 243 (257)
-..|||-||+.||+..
T Consensus 70 CP~Hg~~FDLrTG~~~ 85 (107)
T cd03473 70 CTKHNWKLDVSTMKYV 85 (107)
T ss_pred eCCCCCEEEcCCCCCc
Confidence 3479999999999874
No 48
>PRK14429 acylphosphatase; Provisional
Probab=31.67 E-value=40 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4779999999999988753
No 49
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=31.19 E-value=1.7e+02 Score=23.37 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=55.2
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 025161 75 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 154 (257)
Q Consensus 75 l~~gq~P~~~vItCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav 154 (257)
+..|..|++.++-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999988777776654333 55678899999999975 35668888876656667778777776555
Q ss_pred cccc
Q 025161 155 KGLM 158 (257)
Q Consensus 155 ~a~~ 158 (257)
-+.+
T Consensus 78 Pail 81 (121)
T PF04019_consen 78 PAIL 81 (121)
T ss_pred HHHH
Confidence 4433
No 50
>PRK14448 acylphosphatase; Provisional
Probab=30.88 E-value=38 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.2
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.++.+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4678999999999988754
No 51
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=30.81 E-value=20 Score=27.81 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=12.5
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||+.||+.
T Consensus 67 p~H~a~Fdl~tG~~ 80 (106)
T COG2146 67 PLHGARFDLRTGEC 80 (106)
T ss_pred CccCCEEEcCCCce
Confidence 47999999999985
No 52
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=30.27 E-value=19 Score=27.95 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||+.||+.
T Consensus 71 P~H~~~Fdl~TG~~ 84 (108)
T PRK09511 71 PLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCEEECCCccc
Confidence 47999999999975
No 53
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.13 E-value=29 Score=31.35 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=11.9
Q ss_pred cceEEEeccCCCCc
Q 025161 140 VSNIVVIGHSACGG 153 (257)
Q Consensus 140 v~~IVV~GHt~CGa 153 (257)
=+-|-|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 35788999999995
No 54
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=29.81 E-value=71 Score=22.30 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=18.3
Q ss_pred CceEEEEEEEEccCCeEEEEecc
Q 025161 226 KTLALKGGYYDFVNGSFELWGLD 248 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~~~~ 248 (257)
....+++|+-|+.|++|-....+
T Consensus 21 ~~~~~~~WyvD~~tn~VVV~a~~ 43 (62)
T PF02983_consen 21 APVAVTSWYVDPRTNKVVVTADS 43 (62)
T ss_dssp GGGCEEEEEEECCCTEEEEEEEC
T ss_pred CCCCcceEEEeCCCCeEEEEECC
Confidence 45678999999999998765444
No 55
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=29.53 E-value=21 Score=27.33 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||+.||+.
T Consensus 63 p~Hg~~Fd~~tG~~ 76 (106)
T PRK09965 63 PLHAASFCLRTGKA 76 (106)
T ss_pred CCCCCEEEcCCCCe
Confidence 36999999999986
No 56
>PRK14426 acylphosphatase; Provisional
Probab=29.39 E-value=45 Score=25.16 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5779999999999988754
No 57
>PRK14441 acylphosphatase; Provisional
Probab=29.37 E-value=49 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.0
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
..+.|.||+.+..+|.|+.+
T Consensus 29 ~~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 29 RRLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hhcCcEEEEEECCCCEEEEE
Confidence 46889999999999988754
No 58
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.34 E-value=1.1e+02 Score=25.75 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCC
Q 025161 7 EEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS 42 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (257)
+.++++.+.++.|.+++.+...+.....+..|-..+
T Consensus 82 ~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~ 117 (158)
T PF10083_consen 82 ENALEAANELIEEDEELSPDEKEQFKESLPDLTKDT 117 (158)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcC
Confidence 789999999999999999966666666666665543
No 59
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=29.17 E-value=41 Score=19.18 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHhhhcc
Q 025161 3 NQSYEEAIEALKKLLKEKE 21 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (257)
.+.|++|++.+++.++-..
T Consensus 14 ~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 14 LGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp TT-HHHHHHHHHHHHHHST
T ss_pred hCCHHHHHHHHHHHHHHCc
Confidence 4679999999999887654
No 60
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.68 E-value=50 Score=24.24 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHHHhhhc
Q 025161 1 MANQSYEEAIEALKKLLKEK 20 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (257)
|.-.+||+|++.|.++++.=
T Consensus 1 m~~~~fEeal~~LE~IV~~L 20 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKL 20 (75)
T ss_pred CccccHHHHHHHHHHHHHHH
Confidence 67789999999999888753
No 61
>PRK14449 acylphosphatase; Provisional
Probab=28.38 E-value=51 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.++.+|.|+.+
T Consensus 28 ~lgl~G~V~N~~dG~Vei~ 46 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 4779999999999988754
No 62
>PRK14425 acylphosphatase; Provisional
Probab=28.28 E-value=49 Score=25.09 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.++..|.|+.+
T Consensus 31 ~~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTAL 49 (94)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4668999999999999865
No 63
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=28.26 E-value=19 Score=26.90 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=12.2
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||+.||.+
T Consensus 62 p~Hg~~Fdl~~G~~ 75 (98)
T cd03530 62 PLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCEEECCCCCC
Confidence 36999999999975
No 64
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.20 E-value=1.2e+02 Score=23.96 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHH
Q 025161 3 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERI 53 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~L 53 (257)
...|++|++.|++++....|..-...+........+... .+.+++..|
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~---~~d~Al~~L 108 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG---QYDEALATL 108 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 467899999999999877433322233332222223232 455555555
No 65
>PRK14436 acylphosphatase; Provisional
Probab=28.05 E-value=51 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.7
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.++.+|.|+.+-
T Consensus 29 ~l~l~G~V~N~~dG~Vei~~ 48 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAVL 48 (91)
T ss_pred HcCCEEEEEECCCCcEEEEE
Confidence 47789999999999887543
No 66
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=27.99 E-value=24 Score=26.82 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=12.2
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||++||..
T Consensus 62 P~Hg~~Fdl~~G~~ 75 (108)
T cd03474 62 RAHLWQFDADTGEG 75 (108)
T ss_pred CCcCCEEECCCccc
Confidence 47999999999974
No 67
>PRK14434 acylphosphatase; Provisional
Probab=27.81 E-value=55 Score=24.72 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=16.4
Q ss_pred CceE-EEEEEEEccCCeEEEE
Q 025161 226 KTLA-LKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~-V~G~vYDi~tG~v~~~ 245 (257)
.++. |.||+.+..+|.|+.+
T Consensus 26 ~~lg~l~G~V~N~~dGsVei~ 46 (92)
T PRK14434 26 LEIGDIYGRVWNNDDGTVEIL 46 (92)
T ss_pred HHcCCcEEEEEECCCCCEEEE
Confidence 3577 9999999999987754
No 68
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=27.74 E-value=35 Score=27.53 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 025161 141 SNIVVIGHSACGG 153 (257)
Q Consensus 141 ~~IVV~GHt~CGa 153 (257)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999993
No 69
>PRK14420 acylphosphatase; Provisional
Probab=27.66 E-value=51 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.0
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4679999999999988753
No 70
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=27.61 E-value=76 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=17.5
Q ss_pred cCChhhHHhhhcCCCCcEEEEeec
Q 025161 66 EKNPALYSELAKGQSPKYMVFACS 89 (257)
Q Consensus 66 ~~~~~~~~~l~~gq~P~~~vItCs 89 (257)
.-+|.+|++....+-| ++|++|.
T Consensus 149 ~IDP~lF~~F~I~~VP-afVv~C~ 171 (212)
T PRK13730 149 QIDPTLFSQYGIRSVP-ALVVFCS 171 (212)
T ss_pred eECHHHHHhcCCcccc-EEEEEcC
Confidence 3478899998888888 4666785
No 71
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.60 E-value=53 Score=24.07 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=16.1
Q ss_pred CCch--hHHHHHHHHHHHhhhcc
Q 025161 1 MANQ--SYEEAIEALKKLLKEKE 21 (257)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~ 21 (257)
|+.+ +||+|+..|..+++.=|
T Consensus 1 Ma~k~~sfEe~l~~LE~IV~~LE 23 (75)
T PRK14064 1 MATKKKTFEEAIAELETIVEALE 23 (75)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH
Confidence 5544 99999999998887543
No 72
>PRK14444 acylphosphatase; Provisional
Probab=27.39 E-value=50 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.5
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+-++.+|.|+.+
T Consensus 28 ~~lgl~G~V~N~~dG~Vei~ 47 (92)
T PRK14444 28 REAGVKGWVRNLSDGRVEAV 47 (92)
T ss_pred HHhCCEEEEEECCCCcEEEE
Confidence 35779999999999988743
No 73
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=27.32 E-value=50 Score=24.50 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=14.6
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dg~V~i~~ 48 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIEA 48 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEEE
T ss_pred HhCCceEEEECCCCEEEEEE
Confidence 46689999999999887643
No 74
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=27.31 E-value=64 Score=22.53 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred HHHHHhcChhHHhhhhCCceEEEEE
Q 025161 209 SLSNLLTYPFVREGLVNKTLALKGG 233 (257)
Q Consensus 209 qv~~L~~~p~I~~~~~~g~l~V~G~ 233 (257)
-|..|.++|-+-+.+++|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3678889999999999999998885
No 75
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=27.28 E-value=59 Score=26.59 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 025161 125 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 155 (257)
Q Consensus 125 ~~~~asLeyAv~~L~v~~IVV~GHt~CGav~ 155 (257)
..+.+.+++-...||++.+.++|||- |++-
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~ 57 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGML 57 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHH
Confidence 34667899999999999999999987 5543
No 76
>PRK14446 acylphosphatase; Provisional
Probab=27.25 E-value=58 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.6
Q ss_pred CceEEEEEEEEccCCeEEEEe
Q 025161 226 KTLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~~ 246 (257)
.++.|.||+.+..+|.|+.+-
T Consensus 26 ~~lgl~G~V~N~~dGsVei~~ 46 (88)
T PRK14446 26 VALGLVGHARNQADGSVEVVA 46 (88)
T ss_pred eeCCeEEEEEECCCCCEEEEE
Confidence 468899999999999887543
No 77
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.21 E-value=47 Score=24.67 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHhhhcc
Q 025161 3 NQSYEEAIEALKKLLKEKE 21 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (257)
+.+||+|++.|..+++.=|
T Consensus 6 ~~sfEeal~~LEeIV~~LE 24 (80)
T PRK14067 6 TADFEQQLARLQEIVDALE 24 (80)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 5799999999998887543
No 78
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=26.90 E-value=25 Score=31.17 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.9
Q ss_pred HHHHHhc-ChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCC
Q 025161 209 SLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSL 251 (257)
Q Consensus 209 qv~~L~~-~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~~~~~~~ 251 (257)
|-..|+. -|.-++.|+..+ .|+=+|||.+||+.++|.-|+.+
T Consensus 150 qksr~~am~PmTkEEyearQ-SvIRrVvDpETGRtRLIkGdGEi 192 (225)
T PF10500_consen 150 QKSRIQAMAPMTKEEYEARQ-SVIRRVVDPETGRTRLIKGDGEI 192 (225)
T ss_pred hhhhhhhcCCCCHHHHHHHH-hhheeeecCCCCceeeecccchH
Confidence 4445554 488888887654 56789999999999999887754
No 79
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=25.87 E-value=46 Score=27.78 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.7
Q ss_pred cCcceEEEeccCCCCc
Q 025161 138 LKVSNIVVIGHSACGG 153 (257)
Q Consensus 138 L~v~~IVV~GHt~CGa 153 (257)
-+...|+|+|+++||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3468999999999994
No 80
>PRK14422 acylphosphatase; Provisional
Probab=25.85 E-value=55 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.7
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+-+...|.|+.+
T Consensus 30 ~~~gl~G~V~N~~dG~Vei~ 49 (93)
T PRK14422 30 LELGLTGYAANLADGRVQVV 49 (93)
T ss_pred HHcCCEEEEEECCCCCEEEE
Confidence 35789999999999988754
No 81
>PRK14443 acylphosphatase; Provisional
Probab=25.48 E-value=63 Score=24.59 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.4
Q ss_pred CceEEEEEEEEccCCeEEEEe
Q 025161 226 KTLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~~ 246 (257)
.++.|.||+-++.+|.|+.+-
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~~ 48 (93)
T PRK14443 28 YKYDISGTVKNLDDGSVEIHA 48 (93)
T ss_pred HHcCCEEEEEECCCCEEEEEE
Confidence 357789999999999998654
No 82
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=25.42 E-value=60 Score=31.44 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCc
Q 025161 3 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPK 82 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~GN~rf~~~~~~~~~~~~~~l~~gq~P~ 82 (257)
+-+|.||||.|++....+=+.++ +-=..|-.-|++|........|-+......+|+|+
T Consensus 293 ~~tYteAie~L~~a~t~~fk~~~----------------------kwG~~l~~ehe~yL~~~~~~~PVfV~dYP~~iKpF 350 (446)
T KOG0554|consen 293 RITYTEAIELLQKAVTKKFKTPP----------------------KWGIDLSTEHEKYLVEECFKKPVFVTDYPKGIKPF 350 (446)
T ss_pred hccHHHHHHHHHHhcccccccCc----------------------ccccccchhhHHHHHHHhcCCCEEEEeccccccce
Confidence 35899999999876642222222 00012334467776655444454444455678888
Q ss_pred EEEEeecCCCCChhhhcCCCCCce
Q 025161 83 YMVFACSDSRVCPSHVLDFQPGEA 106 (257)
Q Consensus 83 ~~vItCsDSRv~pe~if~~~~Gdl 106 (257)
++=..=.+.+|..-.++=-+.||+
T Consensus 351 YMr~n~~~~tVaa~DlLVP~vGEl 374 (446)
T KOG0554|consen 351 YMRLNDDGKTVAAFDLLVPGVGEL 374 (446)
T ss_pred EEEecCCCCeeEEEEeecccchhh
Confidence 887665555554433444456666
No 83
>PRK14435 acylphosphatase; Provisional
Probab=24.89 E-value=59 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.+..+|.|+.+-
T Consensus 27 ~~gl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14435 27 SLGVKGYVMNMDDGSVFIHA 46 (90)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 47799999999999988654
No 84
>PRK14433 acylphosphatase; Provisional
Probab=24.67 E-value=60 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.1
Q ss_pred CceEEEEEEEEccCCeEEEEe
Q 025161 226 KTLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~~ 246 (257)
.++.|.||+.++.+|.|+.+-
T Consensus 25 ~~~~l~G~V~N~~dG~Vei~~ 45 (87)
T PRK14433 25 RELGLSGYAENLSDGRVEVVA 45 (87)
T ss_pred HHcCCEEEEEECCCCCEEEEE
Confidence 357789999999999887543
No 85
>PRK14424 acylphosphatase; Provisional
Probab=24.48 E-value=59 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+-++.+|.|+.+-
T Consensus 32 ~~gl~G~V~N~~dG~Vei~~ 51 (94)
T PRK14424 32 ALGLRGWVANLEDGTVEAMI 51 (94)
T ss_pred HcCCeEEEEECCCCCEEEEE
Confidence 46789999999999887543
No 86
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=24.38 E-value=1.8e+02 Score=26.85 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHH
Q 025161 3 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKE 55 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~ 55 (257)
|+.-.+-||-.+++++|+-|+.. +.+.++.+..-|+.+..+|.++....|..
T Consensus 7 ~~~~f~iie~f~~~l~eDpd~a~-~vAAIraL~~vL~~s~a~Ti~el~~~l~~ 58 (313)
T KOG1466|consen 7 SMREFSIIEYFLSFLQEDPDLAM-AVAAIRALLEVLRRSQATTIAELENELKS 58 (313)
T ss_pred cCCcchHHHHHHHHHhcCchhhh-HHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 45556778888999988888876 55556666666666554555554444433
No 87
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=24.36 E-value=43 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.3
Q ss_pred ceEEEeccCCCCc
Q 025161 141 SNIVVIGHSACGG 153 (257)
Q Consensus 141 ~~IVV~GHt~CGa 153 (257)
+.|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4689999999994
No 88
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=24.21 E-value=73 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCCCc
Q 025161 125 AGVGAAVEYAVLHLKVSNIVVIGHSACGG 153 (257)
Q Consensus 125 ~~~~asLeyAv~~L~v~~IVV~GHt~CGa 153 (257)
.++++-||||=..|++.+|+||=+-+.-.
T Consensus 41 ~~lvaLLElAee~L~c~~vvic~~k~~~d 69 (108)
T PF02100_consen 41 ESLVALLELAEEKLGCSHVVICLDKNRPD 69 (108)
T ss_dssp HHHHHHHHHHHHHH----EEEEE---SS-
T ss_pred HHHHHHHHHhcCcCCCCEEEEEEECCchh
Confidence 46889999999999999999998765554
No 89
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=24.11 E-value=1.2e+02 Score=21.70 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=16.1
Q ss_pred eEEEEEEEEccC-CeEEEEec
Q 025161 228 LALKGGYYDFVN-GSFELWGL 247 (257)
Q Consensus 228 l~V~G~vYDi~t-G~v~~~~~ 247 (257)
+.|+||++.+.. |++.|+.+
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~L 22 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIEL 22 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEE
Confidence 678999998874 77888877
No 90
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=24.00 E-value=43 Score=26.55 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=10.6
Q ss_pred eEEEeccCCCCc
Q 025161 142 NIVVIGHSACGG 153 (257)
Q Consensus 142 ~IVV~GHt~CGa 153 (257)
.|+|+||.+||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999995
No 91
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=23.88 E-value=49 Score=26.11 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.3
Q ss_pred ceEEEeccCCCCc
Q 025161 141 SNIVVIGHSACGG 153 (257)
Q Consensus 141 ~~IVV~GHt~CGa 153 (257)
+.|+|+|+++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 4699999999994
No 92
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=23.85 E-value=28 Score=25.82 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 025161 229 ALKGGYYDFVNGSF 242 (257)
Q Consensus 229 ~V~G~vYDi~tG~v 242 (257)
..|||.||++||+.
T Consensus 62 p~H~~~f~~~~G~~ 75 (98)
T cd03467 62 PCHGSRFDLRTGEV 75 (98)
T ss_pred CCCCCEEeCCCccC
Confidence 36999999999985
No 93
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.71 E-value=99 Score=23.85 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCccccc
Q 025161 127 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 157 (257)
Q Consensus 127 ~~asLeyAv~~L~v~~IVV~GHt~CGav~a~ 157 (257)
+...|.-.....+-..|+|+|||-=|+++..
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 80 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASL 80 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHH
Confidence 3345555556666789999999988877653
No 94
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=23.45 E-value=52 Score=29.55 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=12.9
Q ss_pred cceEEEeccCCCCcc
Q 025161 140 VSNIVVIGHSACGGI 154 (257)
Q Consensus 140 v~~IVV~GHt~CGav 154 (257)
.++|.|+||.++|=.
T Consensus 2 ~Rni~ivGh~~~GKT 16 (267)
T cd04169 2 RRTFAIISHPDAGKT 16 (267)
T ss_pred ccEEEEEcCCCCCHH
Confidence 578999999999953
No 95
>PRK14437 acylphosphatase; Provisional
Probab=23.45 E-value=60 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.8
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+.++..|.|+.+-
T Consensus 48 ~lgL~G~V~N~~dG~Vei~~ 67 (109)
T PRK14437 48 ELQLTGWVKNLSHGDVELVA 67 (109)
T ss_pred HhCCeEEEEECCCCCEEEEE
Confidence 47789999999999987643
No 96
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=23.39 E-value=3.4e+02 Score=23.80 Aligned_cols=73 Identities=8% Similarity=0.142 Sum_probs=40.7
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC-ChhhhcCC---CCCc-eEEEecccccCCCCCCccchhhHHHHHHHHHhcCcce
Q 025161 68 NPALYSELAKGQSPKYMVFACSDSRV-CPSHVLDF---QPGE-AFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 142 (257)
Q Consensus 68 ~~~~~~~l~~gq~P~~~vItCsDSRv-~pe~if~~---~~Gd-lFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~ 142 (257)
.+..+.++....+|.=++.-|...+. +.+.++.. ...+ +.++=++-+ |. ++ ++|-=....+|++.
T Consensus 49 ~~~~l~~l~~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~d---p~------Nl-GaI~Rta~afG~~~ 118 (237)
T TIGR00186 49 DRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITD---PH------NL-GAILRTAEAFGVDG 118 (237)
T ss_pred CHHHHHHHhCCCCCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCC---Cc------cH-HHHHHHHHHcCCCE
Confidence 45567788877777666655655543 33444422 1123 233322211 11 12 35555677899999
Q ss_pred EEEeccCC
Q 025161 143 IVVIGHSA 150 (257)
Q Consensus 143 IVV~GHt~ 150 (257)
|++.+++.
T Consensus 119 vil~~~~~ 126 (237)
T TIGR00186 119 VILPKRRS 126 (237)
T ss_pred EEECCCCc
Confidence 99988753
No 97
>PRK14427 acylphosphatase; Provisional
Probab=23.17 E-value=75 Score=24.07 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.9
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+-++.+|.|+.+
T Consensus 30 ~~lgl~G~V~N~~dGsVei~ 49 (94)
T PRK14427 30 EELGLTGTVRNLDDGSVALV 49 (94)
T ss_pred HHcCCEEEEEECCCCeEEEE
Confidence 35789999999999988754
No 98
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.10 E-value=70 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHhhhcc
Q 025161 3 NQSYEEAIEALKKLLKEKE 21 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (257)
+.|||+|++.|..+++.=|
T Consensus 5 ~~sfEeal~~Le~IV~~LE 23 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLD 23 (76)
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 4699999999998887543
No 99
>PRK14452 acylphosphatase; Provisional
Probab=22.72 E-value=65 Score=25.21 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 025161 227 TLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~ 245 (257)
++.|.||+.+..+|.|+.+
T Consensus 45 ~lgL~G~V~N~~dGsVeI~ 63 (107)
T PRK14452 45 DLGLSGWVRNLSDGSVEVQ 63 (107)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 5778999999999998765
No 100
>PRK14438 acylphosphatase; Provisional
Probab=22.44 E-value=77 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=16.6
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 025161 226 KTLALKGGYYDFVNGSFELW 245 (257)
Q Consensus 226 g~l~V~G~vYDi~tG~v~~~ 245 (257)
.++.|.||+-++.+|.|+.+
T Consensus 27 ~~~gl~G~V~N~~dG~Vei~ 46 (91)
T PRK14438 27 QRLNVSGWVKNLPNGSVQGC 46 (91)
T ss_pred HHcCCEEEEEECCCCEEEEE
Confidence 35778999999999988753
No 101
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=22.30 E-value=1.1e+02 Score=24.71 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=32.0
Q ss_pred CCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 025161 102 QPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 156 (257)
Q Consensus 102 ~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt~CGav~a 156 (257)
.+||.++.|+.-|-... ..|+-.+...|+++++|+|-.-..-|.+
T Consensus 60 ~~~~~vi~K~~~saf~~----------t~L~~~L~~~gi~~lii~G~~T~~CV~~ 104 (157)
T cd01012 60 FPDAPVIEKTSFSCWED----------EAFRKALKATGRKQVVLAGLETHVCVLQ 104 (157)
T ss_pred CCCCCceecccccCcCC----------HHHHHHHHhcCCCEEEEEEeeccHHHHH
Confidence 57887777776554432 2466677889999999999876665554
No 102
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=22.26 E-value=2.7e+02 Score=21.99 Aligned_cols=48 Identities=27% Similarity=0.264 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHH
Q 025161 5 SYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKE 55 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~ 55 (257)
.|+||+..|++.+.+..+.+--.+..+.......... .+.++++.++.
T Consensus 53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g---r~~eAl~~~l~ 100 (120)
T PF12688_consen 53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLG---RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 4677777777777665443333334444333222221 55555555543
No 103
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.02 E-value=97 Score=17.76 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHhhhccC
Q 025161 3 NQSYEEAIEALKKLLKEKED 22 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (257)
...|++|++.+++.++-+++
T Consensus 14 ~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 14 LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp TT-HHHHHHHHHHHHHHSTT
T ss_pred hCCchHHHHHHHHHHHHCcC
Confidence 45789999999998876543
No 104
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.84 E-value=1.7e+02 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.5
Q ss_pred chhH--HHHHHHHHHHhhhccCC
Q 025161 3 NQSY--EEAIEALKKLLKEKEDL 23 (257)
Q Consensus 3 ~~~~--~~~~~~~~~~~~~~~~~ 23 (257)
+.|| ++.++.+++++.+.+++
T Consensus 114 dgs~~i~~GL~i~R~ll~~~~~~ 136 (356)
T PRK12822 114 DGSNDIEKGLRLARQLLLSINTL 136 (356)
T ss_pred CCCccHHHHHHHHHHHHHHHHHh
Confidence 4566 89999999997776666
No 105
>PRK14421 acylphosphatase; Provisional
Probab=21.79 E-value=75 Score=24.46 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.7
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+-++.+|.|+.+-
T Consensus 29 ~lgL~G~V~N~~dG~Vei~~ 48 (99)
T PRK14421 29 ALGLEGWVRNRRDGSVEALF 48 (99)
T ss_pred HhCCEEEEEECCCCEEEEEE
Confidence 47789999999999987543
No 106
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=21.46 E-value=47 Score=25.79 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeEEEE
Q 025161 229 ALKGGYYDFVNGSFELW 245 (257)
Q Consensus 229 ~V~G~vYDi~tG~v~~~ 245 (257)
..|||-||+ ||++..+
T Consensus 63 P~Hg~~fd~-~G~~~~~ 78 (115)
T cd03531 63 PFHDWRWGG-DGRCKAI 78 (115)
T ss_pred CCCCCEECC-CCCEEEC
Confidence 369999999 9986543
No 107
>PRK14447 acylphosphatase; Provisional
Probab=21.26 E-value=1e+02 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.0
Q ss_pred CceEEEEEEEEccCC-eEEE
Q 025161 226 KTLALKGGYYDFVNG-SFEL 244 (257)
Q Consensus 226 g~l~V~G~vYDi~tG-~v~~ 244 (257)
.++.|.||+.+..+| .|+.
T Consensus 28 ~~~gl~G~V~N~~dG~~Vei 47 (95)
T PRK14447 28 NRNGVRGWVRNRSDGRTVEA 47 (95)
T ss_pred hhcCeEEEEEECCCCCEEEE
Confidence 457799999999999 5875
No 108
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.20 E-value=2.6e+02 Score=21.74 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=16.8
Q ss_pred cCChhhHHhhhcCCCCcEEEEeec
Q 025161 66 EKNPALYSELAKGQSPKYMVFACS 89 (257)
Q Consensus 66 ~~~~~~~~~l~~gq~P~~~vItCs 89 (257)
.-+|.+|++..-.+-|- +|+.|.
T Consensus 58 ~IdP~~F~~y~I~~VPa-~V~~~~ 80 (113)
T PF09673_consen 58 QIDPRLFRQYNITAVPA-FVVVKD 80 (113)
T ss_pred eEChhHHhhCCceEcCE-EEEEcC
Confidence 35799999988878885 555555
No 109
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=21.18 E-value=73 Score=22.88 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=16.0
Q ss_pred ecCCCCChhhhcCCCCCceEEEe
Q 025161 88 CSDSRVCPSHVLDFQPGEAFVVR 110 (257)
Q Consensus 88 CsDSRv~pe~if~~~~GdlFVvR 110 (257)
-||+|.| ..||+. +||+..+|
T Consensus 22 ASD~~~P-~Yife~-~GEvl~ik 42 (67)
T PF11910_consen 22 ASDPRPP-SYIFEG-PGEVLDIK 42 (67)
T ss_pred hcCCCCC-cceecC-CCeEEEec
Confidence 4888875 667764 89998887
No 110
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=21.15 E-value=94 Score=17.36 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHhhhc
Q 025161 4 QSYEEAIEALKKLLKEK 20 (257)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (257)
..+++|++.++.++++-
T Consensus 14 g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHC
Confidence 46889999999988753
No 111
>KOG4780 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.92 E-value=48 Score=32.25 Aligned_cols=33 Identities=27% Similarity=0.127 Sum_probs=30.5
Q ss_pred eecCCCCChhhhcCCCCCceEEEecccccCCCC
Q 025161 87 ACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 119 (257)
Q Consensus 87 tCsDSRv~pe~if~~~~GdlFVvRNaGN~V~~~ 119 (257)
+=.|||.+.....+-+.||+.-+||+||.+.|-
T Consensus 390 s~~~s~~~~w~~~~~~~~e~~~~r~~~~a~~pl 422 (467)
T KOG4780|consen 390 SKKLSRSVTWADQNDGRGELCEVRNNDNAAGPL 422 (467)
T ss_pred cccccccchhhhccccccchhheeccCceeccc
Confidence 678899999999999999999999999999874
No 112
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=20.77 E-value=1.7e+02 Score=24.10 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccC
Q 025161 100 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS 149 (257)
Q Consensus 100 ~~~~GdlFVvRNaGN~V~~~d~~~~~~~~asLeyAv~~L~v~~IVV~GHt 149 (257)
...+||..+.++.=+-.. + ..|+.-+...|+++|||+|=.
T Consensus 84 ~~~~~~~v~~K~~~saF~--------~--t~L~~~L~~~gi~~vvi~G~~ 123 (179)
T cd01015 84 APQEDEMVLVKKYASAFF--------G--TSLAATLTARGVDTLIVAGCS 123 (179)
T ss_pred CCCCCCEEEecCccCCcc--------C--CcHHHHHHHcCCCEEEEeeec
Confidence 445777666665322221 1 247777889999999999954
No 113
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.67 E-value=1.2e+02 Score=19.05 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhccCCchhhhhhhHHHHHhhcCCCCCChHHHHHHHHHH
Q 025161 7 EEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEG 56 (257)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~G 56 (257)
+++++.|+..| |.+....++....+..+ ....+++.|+++
T Consensus 3 ~~~v~~L~~mF------P~l~~~~I~~~L~~~~g----~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMF------PNLDEEVIKAVLEANNG----NVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHC------CCCCHHHHHHHHHHcCC----CHHHHHHHHHcC
Confidence 56788888776 44444666666555443 567788888865
No 114
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=20.53 E-value=64 Score=25.56 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 025161 141 SNIVVIGHSACGG 153 (257)
Q Consensus 141 ~~IVV~GHt~CGa 153 (257)
+.|+|+|++++|=
T Consensus 1 ~~i~~~G~~~~GK 13 (168)
T cd01897 1 PTLVIAGYPNVGK 13 (168)
T ss_pred CeEEEEcCCCCCH
Confidence 5799999999995
No 115
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.24 E-value=86 Score=23.17 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHHHhhhcc
Q 025161 2 ANQSYEEAIEALKKLLKEKE 21 (257)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (257)
.+.+||+|++.|..+++.=|
T Consensus 8 ~~~sfEea~~~LEeIv~~LE 27 (80)
T PRK00977 8 KPLSFEEALAELEEIVTRLE 27 (80)
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 45799999999998887544
No 116
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=20.16 E-value=1.6e+02 Score=26.35 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=25.2
Q ss_pred ChhHHhhhhCCceEEEEEEEEccCCeEEEEe
Q 025161 216 YPFVREGLVNKTLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 216 ~p~I~~~~~~g~l~V~G~vYDi~tG~v~~~~ 246 (257)
..++-+..+.|.+.-||.+++++||++..+.
T Consensus 212 ~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~ 242 (244)
T TIGR03736 212 MNLLWKLFRKGRLEFHGVFVNLATGRTNPLP 242 (244)
T ss_pred HHHHHHHHhcCceeeeEEEEECCCCcccccc
Confidence 4456677788999999999999999876553
No 117
>PRK14428 acylphosphatase; Provisional
Probab=20.09 E-value=92 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 025161 227 TLALKGGYYDFVNGSFELWG 246 (257)
Q Consensus 227 ~l~V~G~vYDi~tG~v~~~~ 246 (257)
++.|.||+-+..+|.|+..-
T Consensus 33 ~lgL~G~V~N~~dGsVei~~ 52 (97)
T PRK14428 33 RLGVQGWVRNCRDGSVELEA 52 (97)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 57789999999999987643
Done!