BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025163
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 215/285 (75%), Gaps = 34/285 (11%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61 IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
I ML+DP AALS AIT KGG F+E PV
Sbjct: 82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 207 RLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
RLALALGDENAVSMP+ RSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 168/282 (59%), Gaps = 34/282 (12%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
GFLGLGIMG ++ NL+R GF VTVWNR +KC LVA GA SPAEV C ITI M
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64 LADPAAAL----------------------------------SAITSKGGHFLEAPVSGS 89
LADPAAA +A+T++GG FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 90 KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 149
K+PAE G L+IL+AG+++L+ +A A +GKK LGEVG GA+MKLVVNMIMG MM
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 150 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
EG+ L GLD LL+VLD G +ANPMFKGKG +L + +FPLKH QKD+RLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 210 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
+ LGD + R+ G D DF+AVF V++
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 169/282 (59%), Gaps = 34/282 (12%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
GF+GLGIMG A++ NL++ G VT+WNR+ K +EL A GA +P EV++ C +T M
Sbjct: 5 GFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAM 64
Query: 64 LADPAAALS----------------------------------AITSKGGHFLEAPVSGS 89
LADPAAA A+ +KGG FLEAPVSGS
Sbjct: 65 LADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGS 124
Query: 90 KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 149
K+PAE G L+IL+AG++ LYDEA+ +GKK LG+VG GA+MKLVVNM+MG MM
Sbjct: 125 KKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMAC 184
Query: 150 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
F EGL L EK+GL +LDV+ G +ANPMF KG + N+APAFPLKH QKD+RLA
Sbjct: 185 FCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLA 244
Query: 210 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
+ALGD + R+ G GD DFSA+F+ +
Sbjct: 245 VALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 159/281 (56%), Gaps = 34/281 (12%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 62 GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
++DP AA I S+GG FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 88 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 208 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFE 248
LA+ALGD P+ ++L DND SAV+
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 142/288 (49%), Gaps = 35/288 (12%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW--------------------NRTLSKCDELV 40
+++GF+GLG MGK +++NLL+ G V + N+ ++ +++
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 41 AHG-------ATVGGSPAEVIKKC---TITIGMLA-DPAAALS---AITSKGGHFLEAPV 86
TV P V+ C T+ + M + P++ L KG +++APV
Sbjct: 65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
SG + AE G L I+ +A++++ L+VIGK + +G+ G G +K+V N+++GC
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCN 184
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVL-DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
M + +E LVL K GL P T+ +++ G + M ++ ++A F + Q KD
Sbjct: 185 MASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244
Query: 206 MRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKDL 253
+ LAL G E V +P+ R++GLG D SAV +V + +
Sbjct: 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM 292
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 34/279 (12%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VGF+GLGI GK S NLL+ G+ + V +R +++A GA + + ++C + I
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 62 GML-------------------ADPAAAL---------------SAITSKGGHFLEAPVS 87
L A P L A+ +KG L+APVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 88 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
G + A G L + G+KA++D+ G++G G KL +I+ +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
SE L LA K+G++P + + G + + K P + N+ P F + KD+
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 208 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 246
AL +P+ R+ G G++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 41/293 (13%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 23 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 82
Query: 61 IGMLA-------------------------------DPAAA---LSAITSKGGHFLEAPV 86
I ML DPA + + G F++APV
Sbjct: 83 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
SG A +G L + G + + A L +G + G VG G K+ NM++
Sbjct: 143 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 202
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 199
M +E + L + GLDP+ L +L++ NP+ +NY F
Sbjct: 203 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 262
Query: 200 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 252
KD+ LA + + + G DFS+VF+ +++
Sbjct: 263 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 315
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 41/293 (13%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61 IGMLA-------------------------------DPAAA---LSAITSKGGHFLEAPV 86
I ML DPA + + G F++APV
Sbjct: 61 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
SG A +G L + G + + A L +G + G VG G K+ NM++
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 199
M +E + L + GLDP+ L +L++ NP+ +NY F
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 200 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 252
KD+ LA + + + G DFS+VF+ +++
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 37/255 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTIT 60
++GF+GLGI G ++NL R G ++ V T+ DEL++ GA + +V + I
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 61 IGMLADP-------------------------AAALSAITSK---------GGHFLEAPV 86
+ D +++S I +K G +L+APV
Sbjct: 63 FIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPV 122
Query: 87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
SG + A G L I GE+ ++D +++GK +G G+G K+ +I+
Sbjct: 123 SGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALN 182
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
+ SE LV A K+G DP + L G ++ + + G + + P F + QKD+
Sbjct: 183 IEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDL 242
Query: 207 RLALALGDENAVSMP 221
LAL A+++P
Sbjct: 243 NLALQSAKALALNLP 257
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------- 46
++ FLG G G + L G+ + VWNRT ++ L A GAT+
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 47 --------------------GGSPAEV-IKKCTITIGMLADPAAALSAITSKGGHFLEAP 85
P + + +IT D AA L A+ G L+ P
Sbjct: 93 SXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGAL---GIAHLDTP 149
Query: 86 VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 145
VSG AE G LVI + G+ A ++ ++ L V G+ A +G G+G KL I+G
Sbjct: 150 VSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQXIVGI 208
Query: 146 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
+ +E L+ A K G D + + + G + + + G ++ ++AP L Q KD
Sbjct: 209 TIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKD 268
Query: 206 MRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 247
R ALA E PI GL D D S +F
Sbjct: 269 XRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ FLGLG +G I+ LL G+++ VWNRT SK + L GATV + + I I
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 62 GMLADPAA-----------------------ALSAITSK---------GGHFLEAPVSGS 89
+LAD AA +S TS+ G H++ AP+
Sbjct: 67 SVLADDAAVEELFSXELVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIFAR 126
Query: 90 KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAK-MKLVVNMIMGCMMN 148
+ I +G + + K F G+ A +KL N + C +
Sbjct: 127 PEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACSLE 186
Query: 149 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKDMR 207
E AEK+G+ +++ + L A P+F+ G + + Y P AF KD+
Sbjct: 187 XXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDIN 246
Query: 208 LAL 210
L L
Sbjct: 247 LTL 249
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 103/256 (40%), Gaps = 41/256 (16%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG MG ++ +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAAL-------------------------SAITSKGGHFLEAPVSG 88
I C T + + A AL + KG +L+APVSG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 118
Query: 89 SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
AE G L ++ G E+A+ E + KK +G VG G +K + N ++ +
Sbjct: 119 GTSGAEAGTLTVMLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNL 176
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDL-GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
EGL+ K G+ L+V++ G +N +L + F L KD+
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL 236
Query: 207 RLALALGDENAVSMPI 222
+A+ + D P+
Sbjct: 237 GIAMGVLDGEKAPSPL 252
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++G++GLG MG ++ + VTV++ + L GAT+ S A+V I
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61 IGMLAD---------------PAAALSA---------------ITSKGGHFLEAPVSGSK 90
I +L D P ++ + ++ H ++APVSG
Sbjct: 76 ITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGA 135
Query: 91 QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
A G+L + ++ +Y+ A GE G G +MKL NM+
Sbjct: 136 AAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAA 195
Query: 151 SEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSN----------YAPAFPLK 200
E + LAE +GLD + L V+ + + G G M++ N Y P +
Sbjct: 196 CEAMKLAEAAGLDLQALGRVVRH---TDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252
Query: 201 H-QQKDMRLALALGDENAVSMPI 222
+KD+ LALALG+ +V +P+
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPL 275
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 40/205 (19%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG G + +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAAL-------------------------SAITSKGGHFLEAPVSG 88
I C T + + A AL + KG +L+APVSG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 118
Query: 89 SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
AE G L + G E+A+ E + KK +G VG G +K + N ++ +
Sbjct: 119 GTSGAEAGTLTVXLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNL 176
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLD 172
EGL+ K G+ L+V++
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVIN 201
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATV------------- 46
++G +GL +MGK +++N+ G+ V V+NR K DE + A G +
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 65
Query: 47 -----------GGSPAEV--------IKKCTITIG----MLADPAAALSAITSKGGHFLE 83
G+P + ++K I I D + G HF+
Sbjct: 66 EKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIG 125
Query: 84 APVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEVGNGAKMK 136
VSG ++ A G I+ G+K ++ EAI+A V G+ ++G G G +K
Sbjct: 126 TGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPDGAGHYVK 183
Query: 137 LVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 171
+V N I M +E L + G+D L +V
Sbjct: 184 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATV------------- 46
++G +GL +MGK +++N+ G+ V V+NR K DE + A G +
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 66
Query: 47 -----------GGSPAEV--------IKKCTITIG----MLADPAAALSAITSKGGHFLE 83
G+P + ++K I I D + G HF+
Sbjct: 67 EKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIG 126
Query: 84 APVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEVGNGAKMK 136
VSG ++ A G I+ G+K ++ EAI+A V G+ ++G G G +K
Sbjct: 127 TGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPDGAGHYVK 184
Query: 137 LVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 171
+V N I M +E L + G+D L +V
Sbjct: 185 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 65 ADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 124
AD +A+T+ + L+APVSG A G+ + ++G +A + L+ + +
Sbjct: 107 ADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVY 166
Query: 125 FLGEV-GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG 183
+ + G G+ +K++ ++ G + +E LA ++G+ DV+ + F+
Sbjct: 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFEN 226
Query: 184 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDF 243
+ ++ +Y P + KD+ L +P+ + G G D
Sbjct: 227 RXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDD 286
Query: 244 SAVFEV 249
SAV ++
Sbjct: 287 SAVIKI 292
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
++G +G+ +MG+ +++N+ G+ V+V+NR+ K +E++A
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAE 57
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 30/42 (71%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAE 57
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
6- Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 30/42 (71%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAE 57
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
+ G +GL +MG+ + +N +GF V +NRT SK D +A+ A
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEA 54
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 27 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 69
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 6 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 48
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 44
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 43
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of
Inhibition
Length = 472
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 42
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase
Refined At 2 Angstroms Resolution
Length = 482
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 46
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 107/286 (37%), Gaps = 41/286 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 62 -----------------GMLAD--------------PAAAL---SAITSKGGHFLEAPVS 87
G+LA P +A +A +G L+APVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 88 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
G A G L G+ ++A G+ F G G G K+ N ++ +
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVL--DLGG-----IANPMFKGKGPTMLQSNYAPAFPLK 200
+E L +GL+ + L ++ GG + NP +Y+ F +
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXAQ 243
Query: 201 HQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 246
KD+ LA +A S P G + DFS V
Sbjct: 244 LXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 107/286 (37%), Gaps = 41/286 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 62 -----------------GMLAD--------------PAAAL---SAITSKGGHFLEAPVS 87
G+LA P +A +A +G L+APVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 88 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
G A G L G+ ++A G+ F G G G K+ N ++ +
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVL--DLGG-----IANPMFKGKGPTMLQSNYAPAFPLK 200
+E L +GL+ + L ++ GG + NP +Y+ F +
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXAQ 244
Query: 201 HQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 246
KD+ LA +A S P G + DFS V
Sbjct: 245 LXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 129 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 186
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 192
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 15 ISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45
+++N+ GFKV V+NRT SK +E + A+
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANAS 46
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
VG LG+G +GKAI+ L+ G K+ W+R
Sbjct: 149 VGILGMGAIGKAIARRLIPFGVKLYYWSR 177
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43
+ LG G G A+++ L R G KV +W+ DE+ A G
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG 72
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVG-GSPAEVIKKC 57
+G LGLG +G+A++ G V WNR TLS D +AH + V ++V+ C
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVD-WIAHQSPVDLARDSDVLAVC 229
>pdb|3L6D|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
pdb|3L6D|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
Length = 306
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35
+V +GLG G + LL+ G +V +WNR+ K
Sbjct: 10 FDVSVIGLGAXGTIXAQVLLKQGKRVAIWNRSPGK 44
>pdb|2F1K|A Chain A, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|B Chain B, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|C Chain C, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|D Chain D, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
Length = 279
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40
M++G +GLG++G +++ +L R G + +R S C++ V
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV 40
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VG LG G ++++ L+ +GFKV V +R + L A V V I +
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFV 89
Query: 62 GMLADPAAALSAITSK 77
+ + ++L +++ +
Sbjct: 90 AVFREHYSSLCSLSDQ 105
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW 29
M V LG G MG A+S+ L+ NG +V +W
Sbjct: 1 MIVSILGAGAMGSALSVPLVDNGNEVRIW 29
>pdb|3GGG|D Chain D, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|A Chain A, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGO|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGO|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus With Hpp And Nadh
pdb|3GGP|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|B Chain B, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|C Chain C, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGP|D Chain D, Crystal Structure Of Prephenate Dehydrogenase From A.
Aeolicus In Complex With Hydroxyphenyl Propionate And
Nad+
pdb|3GGG|B Chain B, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
pdb|3GGG|C Chain C, The Crystal Structure Of A. Aeolicus Prephenate
Dehydrogenase In Complex With Tyrosine And Nad+
Length = 314
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWN-----RTLSKCDEL--VAHGATVGGSPAEVIKKCT 58
+G+G MG + + +L R+GFK ++ ++SK +L + G T S A+V + +
Sbjct: 39 VGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT---SIAKV-EDFS 94
Query: 59 ITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLV 99
ML+ P I K + L + + Q + G+LV
Sbjct: 95 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLV 135
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKV 26
VG LGLG MG+ I+++ R G V
Sbjct: 319 VGVLGLGTMGRGIAISFARVGISV 342
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKV 26
VG LGLG MG+ I+++ R G V
Sbjct: 319 VGVLGLGTMGRGIAISFARVGISV 342
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKV 26
VG LGLG MG+ I+++ R G V
Sbjct: 304 VGVLGLGTMGRGIAISFARVGISV 327
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKV 26
VG LGLG MG+ I+++ R G V
Sbjct: 40 VGVLGLGTMGRGIAISFARVGISV 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,928,566
Number of Sequences: 62578
Number of extensions: 266307
Number of successful extensions: 652
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 61
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)