Query 025163
Match_columns 257
No_of_seqs 176 out of 2266
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 5.2E-54 1.1E-58 354.2 29.3 251 1-251 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 8.4E-52 1.8E-56 334.8 28.6 255 1-255 36-325 (327)
3 PRK15059 tartronate semialdehy 100.0 6.2E-48 1.3E-52 325.4 30.5 254 1-255 1-288 (292)
4 PRK15461 NADH-dependent gamma- 100.0 1.3E-46 2.9E-51 318.6 30.7 254 1-254 2-290 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 2.7E-44 5.8E-49 303.8 28.5 247 5-251 1-288 (288)
6 TIGR01505 tartro_sem_red 2-hyd 100.0 1.3E-43 2.8E-48 300.3 30.1 253 2-254 1-287 (291)
7 PRK11559 garR tartronate semia 100.0 3.3E-43 7.1E-48 298.7 30.0 254 1-254 3-290 (296)
8 PLN02858 fructose-bisphosphate 100.0 3E-43 6.6E-48 344.0 29.5 254 1-254 5-295 (1378)
9 PLN02858 fructose-bisphosphate 100.0 2.7E-41 5.9E-46 330.4 30.4 254 1-254 325-615 (1378)
10 PRK12490 6-phosphogluconate de 100.0 1.4E-39 3E-44 276.2 23.4 250 1-253 1-294 (299)
11 PLN02350 phosphogluconate dehy 100.0 6.7E-39 1.4E-43 284.5 24.5 232 1-233 7-297 (493)
12 PRK09599 6-phosphogluconate de 100.0 2.3E-37 4.9E-42 263.0 23.2 250 1-254 1-296 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.4E-33 5.2E-38 237.8 24.2 249 1-253 1-289 (298)
14 PTZ00142 6-phosphogluconate de 100.0 9.5E-33 2.1E-37 245.1 23.4 225 1-226 2-283 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 8.7E-32 1.9E-36 239.0 21.3 223 2-225 1-278 (467)
16 TIGR03026 NDP-sugDHase nucleot 100.0 1.2E-30 2.5E-35 230.8 23.1 222 1-233 1-296 (411)
17 PRK09287 6-phosphogluconate de 100.0 2.1E-30 4.5E-35 229.3 21.4 214 11-225 1-271 (459)
18 PRK14618 NAD(P)H-dependent gly 100.0 1.9E-30 4.2E-35 223.3 15.6 244 1-251 5-321 (328)
19 COG1023 Gnd Predicted 6-phosph 100.0 4.7E-29 1E-33 196.0 18.0 246 1-253 1-290 (300)
20 PRK00094 gpsA NAD(P)H-dependen 100.0 3.9E-27 8.4E-32 202.7 19.2 243 1-251 2-323 (325)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 4E-26 8.7E-31 194.7 23.6 236 1-249 3-295 (308)
22 PF03446 NAD_binding_2: NAD bi 100.0 9E-28 1.9E-32 186.4 11.3 128 1-128 2-163 (163)
23 PRK15182 Vi polysaccharide bio 99.9 7.7E-26 1.7E-30 199.6 22.7 218 1-233 7-293 (425)
24 PRK15057 UDP-glucose 6-dehydro 99.9 5.5E-25 1.2E-29 192.0 23.5 221 1-233 1-283 (388)
25 PRK11064 wecC UDP-N-acetyl-D-m 99.9 7.2E-25 1.6E-29 193.4 22.7 219 1-233 4-295 (415)
26 PRK14619 NAD(P)H-dependent gly 99.9 1.5E-25 3.2E-30 191.2 16.6 227 1-252 5-300 (308)
27 COG0240 GpsA Glycerol-3-phosph 99.9 5E-24 1.1E-28 177.9 18.0 244 1-251 2-322 (329)
28 COG0362 Gnd 6-phosphogluconate 99.9 6.5E-24 1.4E-28 178.1 16.4 224 1-225 4-283 (473)
29 PRK08229 2-dehydropantoate 2-r 99.9 4.9E-23 1.1E-27 178.4 19.8 243 1-251 3-335 (341)
30 COG1004 Ugd Predicted UDP-gluc 99.9 1.3E-22 2.9E-27 171.6 19.3 223 1-233 1-294 (414)
31 PF14833 NAD_binding_11: NAD-b 99.9 1.9E-22 4.2E-27 149.0 12.0 121 130-250 1-122 (122)
32 PRK07531 bifunctional 3-hydrox 99.9 1E-20 2.2E-25 170.8 19.7 168 1-180 5-226 (495)
33 PLN02353 probable UDP-glucose 99.9 7.1E-20 1.5E-24 163.2 24.7 222 1-231 2-304 (473)
34 PLN02688 pyrroline-5-carboxyla 99.9 2.9E-20 6.3E-25 155.6 18.6 219 1-237 1-264 (266)
35 PRK12439 NAD(P)H-dependent gly 99.8 8.3E-20 1.8E-24 157.7 18.2 242 1-251 8-328 (341)
36 KOG2653 6-phosphogluconate deh 99.8 3.3E-20 7E-25 153.8 14.3 223 1-225 7-286 (487)
37 PTZ00345 glycerol-3-phosphate 99.8 1.4E-19 3E-24 156.2 17.4 242 1-251 12-354 (365)
38 PRK14620 NAD(P)H-dependent gly 99.8 6.2E-19 1.3E-23 151.8 20.0 241 1-250 1-324 (326)
39 COG0677 WecC UDP-N-acetyl-D-ma 99.8 1.6E-19 3.5E-24 152.5 15.2 176 1-177 10-256 (436)
40 PRK07679 pyrroline-5-carboxyla 99.8 2.2E-19 4.7E-24 151.2 15.9 220 1-237 4-269 (279)
41 TIGR03376 glycerol3P_DH glycer 99.8 6.6E-19 1.4E-23 151.0 15.7 227 2-231 1-330 (342)
42 PRK09260 3-hydroxybutyryl-CoA 99.8 1.1E-18 2.3E-23 147.7 16.0 161 1-177 2-223 (288)
43 PRK06130 3-hydroxybutyryl-CoA 99.8 9.3E-18 2E-22 143.6 20.6 168 1-178 5-223 (311)
44 PRK08268 3-hydroxy-acyl-CoA de 99.8 3.9E-18 8.5E-23 153.9 18.3 156 2-176 9-227 (507)
45 PRK12921 2-dehydropantoate 2-r 99.8 2.6E-17 5.6E-22 140.5 22.1 216 1-234 1-301 (305)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 4.3E-18 9.3E-23 153.3 17.1 216 1-244 6-286 (503)
47 PRK12557 H(2)-dependent methyl 99.8 2.3E-17 5.1E-22 141.6 19.0 171 1-172 1-237 (342)
48 PRK06522 2-dehydropantoate 2-r 99.8 2.6E-17 5.7E-22 140.3 19.2 221 1-235 1-299 (304)
49 PRK08507 prephenate dehydrogen 99.8 7.4E-17 1.6E-21 135.6 20.5 166 1-172 1-207 (275)
50 PRK06249 2-dehydropantoate 2-r 99.7 1.7E-16 3.6E-21 135.9 19.2 214 1-235 6-310 (313)
51 PRK11880 pyrroline-5-carboxyla 99.7 3E-16 6.6E-21 131.4 19.6 226 1-237 3-265 (267)
52 PRK07417 arogenate dehydrogena 99.7 3.2E-17 7E-22 138.0 13.0 150 1-150 1-189 (279)
53 PRK08293 3-hydroxybutyryl-CoA 99.7 3E-16 6.6E-21 132.7 18.3 167 1-177 4-227 (287)
54 PRK07819 3-hydroxybutyryl-CoA 99.7 7.3E-16 1.6E-20 130.0 18.6 167 2-177 7-228 (286)
55 PRK05708 2-dehydropantoate 2-r 99.7 4.2E-16 9.2E-21 132.7 17.2 219 1-236 3-299 (305)
56 PRK07530 3-hydroxybutyryl-CoA 99.7 8.4E-16 1.8E-20 130.3 18.3 158 1-176 5-224 (292)
57 PRK11199 tyrA bifunctional cho 99.7 1.9E-15 4E-20 132.0 20.2 152 1-169 99-279 (374)
58 PRK07066 3-hydroxybutyryl-CoA 99.7 5.4E-15 1.2E-19 125.8 22.4 168 2-179 9-228 (321)
59 PRK08655 prephenate dehydrogen 99.7 3.5E-15 7.6E-20 132.7 22.0 167 1-171 1-202 (437)
60 PRK12491 pyrroline-5-carboxyla 99.7 1.7E-15 3.8E-20 126.7 18.4 223 1-236 3-266 (272)
61 PRK06476 pyrroline-5-carboxyla 99.7 1.8E-15 3.8E-20 126.1 17.0 164 1-173 1-195 (258)
62 COG1893 ApbA Ketopantoate redu 99.7 1.5E-15 3.3E-20 128.8 16.5 224 1-236 1-302 (307)
63 PLN02545 3-hydroxybutyryl-CoA 99.7 4.2E-15 9.1E-20 126.3 17.8 159 2-177 6-225 (295)
64 PRK06035 3-hydroxyacyl-CoA deh 99.7 3.5E-15 7.6E-20 126.5 17.1 158 2-177 5-227 (291)
65 COG0345 ProC Pyrroline-5-carbo 99.7 6.5E-15 1.4E-19 121.2 17.9 224 1-237 2-264 (266)
66 PRK05808 3-hydroxybutyryl-CoA 99.6 1.7E-14 3.7E-19 121.7 18.6 164 2-177 5-224 (282)
67 PRK07680 late competence prote 99.6 4E-14 8.7E-19 118.9 17.9 170 1-173 1-204 (273)
68 PRK07502 cyclohexadienyl dehyd 99.6 1.7E-12 3.7E-17 110.9 23.4 142 1-142 7-193 (307)
69 PRK06545 prephenate dehydrogen 99.5 4.4E-13 9.5E-18 116.8 17.8 165 1-172 1-211 (359)
70 PRK07634 pyrroline-5-carboxyla 99.5 3E-13 6.6E-18 111.8 15.4 167 1-173 5-208 (245)
71 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 3.7E-14 8E-19 109.3 8.2 71 2-72 1-85 (157)
72 PTZ00431 pyrroline carboxylate 99.5 3.5E-12 7.7E-17 106.3 18.3 217 1-236 4-259 (260)
73 COG1250 FadB 3-hydroxyacyl-CoA 99.5 3.1E-12 6.7E-17 107.4 17.2 224 1-245 4-285 (307)
74 PRK05479 ketol-acid reductoiso 99.5 4.4E-12 9.5E-17 107.9 18.0 165 1-167 18-224 (330)
75 TIGR01915 npdG NADPH-dependent 99.5 9.6E-13 2.1E-17 107.0 13.4 138 1-138 1-199 (219)
76 COG0287 TyrA Prephenate dehydr 99.5 8.1E-12 1.8E-16 104.3 19.1 143 1-143 4-186 (279)
77 PRK08269 3-hydroxybutyryl-CoA 99.5 4.2E-12 9.1E-17 108.3 16.6 217 11-244 1-283 (314)
78 PF03807 F420_oxidored: NADP o 99.5 2.8E-13 6.1E-18 95.6 7.6 71 2-72 1-77 (96)
79 TIGR01724 hmd_rel H2-forming N 99.4 2.5E-11 5.3E-16 101.4 19.4 127 1-128 1-194 (341)
80 KOG2666 UDP-glucose/GDP-mannos 99.4 3.5E-12 7.6E-17 105.1 13.9 242 1-252 2-324 (481)
81 PLN02256 arogenate dehydrogena 99.4 9.3E-12 2E-16 105.7 16.9 139 1-140 37-216 (304)
82 PLN02712 arogenate dehydrogena 99.4 3.8E-12 8.3E-17 118.4 15.7 134 1-136 370-545 (667)
83 PRK06928 pyrroline-5-carboxyla 99.4 8.7E-12 1.9E-16 104.9 15.8 168 1-174 2-208 (277)
84 TIGR00745 apbA_panE 2-dehydrop 99.4 1.5E-11 3.3E-16 104.2 16.4 212 10-233 1-290 (293)
85 TIGR02440 FadJ fatty oxidation 99.4 1.7E-11 3.7E-16 115.1 17.9 158 2-172 306-520 (699)
86 PRK11730 fadB multifunctional 99.4 1.1E-11 2.5E-16 116.6 16.7 162 2-176 315-532 (715)
87 COG2085 Predicted dinucleotide 99.4 6.7E-12 1.5E-16 98.8 11.8 141 1-141 2-193 (211)
88 TIGR02437 FadB fatty oxidation 99.4 1.7E-11 3.8E-16 115.1 16.5 162 2-176 315-532 (714)
89 PRK11154 fadJ multifunctional 99.4 4.4E-11 9.5E-16 112.6 17.3 158 2-172 311-525 (708)
90 TIGR00465 ilvC ketol-acid redu 99.3 8E-11 1.7E-15 100.2 16.6 68 1-69 4-72 (314)
91 PF02737 3HCDH_N: 3-hydroxyacy 99.3 7.1E-12 1.5E-16 98.6 9.5 122 2-127 1-178 (180)
92 PF03721 UDPG_MGDP_dh_N: UDP-g 99.3 2.2E-12 4.8E-17 101.8 6.4 69 1-69 1-89 (185)
93 TIGR02441 fa_ox_alpha_mit fatt 99.3 5E-11 1.1E-15 112.3 16.2 158 2-172 337-550 (737)
94 KOG2304 3-hydroxyacyl-CoA dehy 99.3 1.7E-11 3.6E-16 96.6 9.5 217 2-243 13-297 (298)
95 PLN02712 arogenate dehydrogena 99.3 1.9E-10 4.1E-15 107.2 16.3 138 1-139 53-231 (667)
96 PF10727 Rossmann-like: Rossma 99.3 6.6E-12 1.4E-16 92.4 5.3 72 1-72 11-84 (127)
97 PRK08818 prephenate dehydrogen 99.2 5.5E-10 1.2E-14 96.8 16.3 130 1-141 5-168 (370)
98 PRK14806 bifunctional cyclohex 99.2 3.8E-10 8.2E-15 107.4 16.4 140 1-140 4-189 (735)
99 PRK13403 ketol-acid reductoiso 99.2 2E-09 4.3E-14 90.7 18.2 69 1-70 17-85 (335)
100 KOG2711 Glycerol-3-phosphate d 99.1 1.5E-09 3.2E-14 90.7 11.9 245 2-254 23-368 (372)
101 PRK06444 prephenate dehydrogen 99.0 2E-08 4.4E-13 79.7 15.8 113 1-142 1-135 (197)
102 KOG2380 Prephenate dehydrogena 99.0 1.4E-08 3.1E-13 84.9 14.3 125 2-128 54-220 (480)
103 PF00984 UDPG_MGDP_dh: UDP-glu 98.9 2.3E-08 4.9E-13 70.0 10.8 93 130-231 2-94 (96)
104 PF07991 IlvN: Acetohydroxy ac 98.9 6.4E-09 1.4E-13 78.8 7.9 71 1-72 5-76 (165)
105 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.5E-07 3.2E-12 75.3 15.9 150 1-171 29-193 (200)
106 PF01408 GFO_IDH_MocA: Oxidore 98.9 1.2E-08 2.5E-13 74.8 8.7 106 1-122 1-115 (120)
107 PF02153 PDH: Prephenate dehyd 98.9 6.2E-08 1.3E-12 80.7 13.3 134 15-148 1-178 (258)
108 PRK12480 D-lactate dehydrogena 98.9 1E-08 2.2E-13 88.2 8.8 68 1-72 147-214 (330)
109 PRK13302 putative L-aspartate 98.9 5.4E-08 1.2E-12 81.5 12.9 82 1-82 7-95 (271)
110 PRK13304 L-aspartate dehydroge 98.9 6E-08 1.3E-12 81.1 12.9 81 1-81 2-88 (265)
111 PRK07574 formate dehydrogenase 98.8 1.6E-08 3.6E-13 88.3 9.1 72 1-72 193-264 (385)
112 TIGR00112 proC pyrroline-5-car 98.8 1.8E-07 4E-12 77.3 14.8 198 23-233 9-243 (245)
113 cd01065 NAD_bind_Shikimate_DH 98.8 1.3E-08 2.9E-13 78.0 7.1 69 1-69 20-94 (155)
114 PLN03139 formate dehydrogenase 98.8 2.4E-08 5.2E-13 87.2 8.9 72 1-72 200-271 (386)
115 PF02558 ApbA: Ketopantoate re 98.7 2.2E-08 4.8E-13 76.5 6.3 69 3-72 1-83 (151)
116 PF02826 2-Hacid_dh_C: D-isome 98.7 4.6E-08 1E-12 76.9 8.0 68 1-69 37-104 (178)
117 PRK13243 glyoxylate reductase; 98.7 7.2E-08 1.6E-12 83.2 8.7 70 1-72 151-220 (333)
118 KOG2305 3-hydroxyacyl-CoA dehy 98.7 2.8E-07 6.1E-12 73.1 10.3 167 2-179 5-229 (313)
119 PRK08605 D-lactate dehydrogena 98.7 6.6E-08 1.4E-12 83.4 7.4 69 1-72 147-216 (332)
120 COG4007 Predicted dehydrogenas 98.6 6E-06 1.3E-10 66.8 17.4 166 1-168 2-235 (340)
121 PF01488 Shikimate_DH: Shikima 98.6 5.6E-08 1.2E-12 72.9 5.6 68 2-69 14-88 (135)
122 COG1712 Predicted dinucleotide 98.6 1.3E-06 2.8E-11 69.3 13.2 110 1-126 1-118 (255)
123 PRK14194 bifunctional 5,10-met 98.6 1.2E-07 2.5E-12 79.7 7.7 120 1-143 160-280 (301)
124 TIGR02853 spore_dpaA dipicolin 98.6 1.3E-07 2.8E-12 79.9 7.7 66 2-67 153-220 (287)
125 PRK15469 ghrA bifunctional gly 98.6 1.2E-07 2.7E-12 80.9 6.9 70 1-72 137-206 (312)
126 PRK06141 ornithine cyclodeamin 98.6 1.5E-07 3.2E-12 80.7 7.3 66 2-67 127-200 (314)
127 PRK06436 glycerate dehydrogena 98.6 2.2E-07 4.8E-12 78.9 7.9 66 1-72 123-189 (303)
128 COG1748 LYS9 Saccharopine dehy 98.5 7.1E-07 1.5E-11 77.6 9.3 90 1-90 2-104 (389)
129 PRK14188 bifunctional 5,10-met 98.5 4.8E-07 1E-11 76.1 7.8 122 1-143 159-283 (296)
130 TIGR01327 PGDH D-3-phosphoglyc 98.5 4.9E-07 1.1E-11 82.7 8.5 71 1-72 139-209 (525)
131 PRK13581 D-3-phosphoglycerate 98.5 5.1E-07 1.1E-11 82.6 8.5 70 1-72 141-210 (526)
132 cd05213 NAD_bind_Glutamyl_tRNA 98.5 3.4E-07 7.3E-12 78.4 6.5 86 1-86 179-274 (311)
133 COG0059 IlvC Ketol-acid reduct 98.5 1.8E-05 3.9E-10 65.7 16.0 70 2-72 20-90 (338)
134 TIGR02371 ala_DH_arch alanine 98.5 4.4E-07 9.4E-12 78.1 7.0 67 2-68 130-204 (325)
135 KOG3124 Pyrroline-5-carboxylat 98.5 9.1E-06 2E-10 65.9 13.9 217 1-236 1-264 (267)
136 PRK08306 dipicolinate synthase 98.5 9.5E-07 2.1E-11 75.0 8.8 69 1-69 153-223 (296)
137 PRK05225 ketol-acid reductoiso 98.5 1.2E-05 2.6E-10 70.8 15.7 68 1-69 37-110 (487)
138 PRK00048 dihydrodipicolinate r 98.4 6.1E-06 1.3E-10 68.7 12.8 85 1-85 2-91 (257)
139 PLN02928 oxidoreductase family 98.4 9.6E-07 2.1E-11 76.6 8.2 71 1-72 160-242 (347)
140 PRK13301 putative L-aspartate 98.4 9.1E-06 2E-10 66.9 13.4 108 1-125 3-119 (267)
141 PLN00203 glutamyl-tRNA reducta 98.4 7.2E-07 1.6E-11 80.9 6.9 68 2-69 268-342 (519)
142 PRK00257 erythronate-4-phospha 98.4 8.9E-07 1.9E-11 77.4 7.2 63 1-68 117-179 (381)
143 TIGR01763 MalateDH_bact malate 98.4 1.2E-06 2.6E-11 74.7 7.8 66 1-67 2-80 (305)
144 cd05292 LDH_2 A subgroup of L- 98.4 1.3E-06 2.9E-11 74.6 7.7 66 1-67 1-78 (308)
145 COG0111 SerA Phosphoglycerate 98.4 1.4E-06 3E-11 74.7 7.4 71 1-72 143-213 (324)
146 COG1052 LdhA Lactate dehydroge 98.3 1.9E-06 4.2E-11 73.7 8.3 70 1-72 147-216 (324)
147 COG5495 Uncharacterized conser 98.3 1.4E-05 3E-10 63.7 12.2 168 1-169 11-211 (289)
148 cd05297 GH4_alpha_glucosidase_ 98.3 9.2E-07 2E-11 78.8 6.5 66 1-66 1-84 (423)
149 COG0569 TrkA K+ transport syst 98.3 1.4E-06 3.1E-11 71.0 6.6 72 1-72 1-82 (225)
150 TIGR01035 hemA glutamyl-tRNA r 98.3 1.2E-06 2.6E-11 78.0 6.5 68 2-69 182-253 (417)
151 PRK13303 L-aspartate dehydroge 98.3 2.2E-05 4.7E-10 65.7 13.4 82 1-82 2-89 (265)
152 COG0373 HemA Glutamyl-tRNA red 98.3 1.8E-06 3.9E-11 75.5 7.0 68 2-69 180-251 (414)
153 PRK06223 malate dehydrogenase; 98.3 2.3E-06 5E-11 73.2 7.5 64 1-65 3-79 (307)
154 PF00056 Ldh_1_N: lactate/mala 98.3 1.7E-06 3.8E-11 65.2 5.9 66 1-66 1-79 (141)
155 PRK14179 bifunctional 5,10-met 98.3 8.6E-06 1.9E-10 68.1 10.5 116 2-143 160-276 (284)
156 COG2910 Putative NADH-flavin r 98.3 1.4E-06 3.1E-11 67.1 5.1 67 1-67 1-73 (211)
157 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 9.2E-06 2E-10 63.0 9.6 74 2-89 46-120 (168)
158 TIGR01921 DAP-DH diaminopimela 98.3 3E-05 6.6E-10 66.0 13.5 117 1-119 4-136 (324)
159 cd05291 HicDH_like L-2-hydroxy 98.3 3.3E-06 7.3E-11 72.1 7.7 67 1-67 1-79 (306)
160 PRK00045 hemA glutamyl-tRNA re 98.3 2E-06 4.4E-11 76.7 6.6 70 1-70 183-256 (423)
161 PRK07340 ornithine cyclodeamin 98.3 4.1E-06 8.8E-11 71.4 8.2 67 2-68 127-200 (304)
162 PRK15438 erythronate-4-phospha 98.3 3.1E-06 6.6E-11 73.8 7.5 63 1-68 117-179 (378)
163 PRK13940 glutamyl-tRNA reducta 98.3 2.4E-06 5.2E-11 75.7 6.9 86 1-86 182-274 (414)
164 PRK15409 bifunctional glyoxyla 98.2 4.5E-06 9.8E-11 71.7 8.3 70 1-72 146-216 (323)
165 PRK11790 D-3-phosphoglycerate 98.2 3.4E-06 7.5E-11 74.7 7.7 68 1-72 152-219 (409)
166 PF00670 AdoHcyase_NAD: S-aden 98.2 5.9E-06 1.3E-10 63.1 7.8 66 2-68 25-90 (162)
167 PRK08291 ectoine utilization p 98.2 4.1E-06 8.9E-11 72.3 7.8 68 1-68 133-209 (330)
168 TIGR02992 ectoine_eutC ectoine 98.2 4.7E-06 1E-10 71.8 7.8 67 2-68 131-206 (326)
169 PRK00683 murD UDP-N-acetylmura 98.2 1.4E-05 3.1E-10 71.3 11.0 132 2-133 5-141 (418)
170 PRK05476 S-adenosyl-L-homocyst 98.2 1.5E-05 3.2E-10 70.5 10.5 69 2-71 214-282 (425)
171 COG0673 MviM Predicted dehydro 98.2 1E-05 2.2E-10 70.0 9.3 117 1-117 4-141 (342)
172 TIGR00036 dapB dihydrodipicoli 98.2 6.1E-05 1.3E-09 63.0 13.5 122 1-138 2-138 (266)
173 PRK04148 hypothetical protein; 98.2 3E-05 6.4E-10 57.4 10.2 89 1-90 18-114 (134)
174 KOG0069 Glyoxylate/hydroxypyru 98.2 7.7E-06 1.7E-10 69.6 7.9 70 2-72 164-233 (336)
175 PF01118 Semialdhyde_dh: Semia 98.2 7.2E-06 1.6E-10 60.2 6.8 84 2-85 1-97 (121)
176 PRK08410 2-hydroxyacid dehydro 98.2 5.9E-06 1.3E-10 70.6 7.1 67 1-72 146-212 (311)
177 TIGR00507 aroE shikimate 5-deh 98.1 7.7E-06 1.7E-10 68.6 7.5 66 2-67 119-189 (270)
178 PRK06407 ornithine cyclodeamin 98.1 7.8E-06 1.7E-10 69.5 7.5 67 2-68 119-194 (301)
179 PTZ00075 Adenosylhomocysteinas 98.1 1E-05 2.3E-10 72.0 8.4 68 2-70 256-323 (476)
180 TIGR00936 ahcY adenosylhomocys 98.1 1.7E-05 3.8E-10 69.7 9.2 70 2-72 197-266 (406)
181 PF01113 DapB_N: Dihydrodipico 98.1 9.2E-06 2E-10 59.9 6.4 80 1-81 1-94 (124)
182 PRK03369 murD UDP-N-acetylmura 98.1 8.9E-05 1.9E-09 67.5 13.9 132 2-133 14-156 (488)
183 TIGR03215 ac_ald_DH_ac acetald 98.1 3.8E-05 8.3E-10 64.5 10.4 83 1-83 2-93 (285)
184 cd00401 AdoHcyase S-adenosyl-L 98.1 2.1E-05 4.6E-10 69.4 9.2 70 2-72 204-273 (413)
185 PF03435 Saccharop_dh: Sacchar 98.1 1.7E-05 3.8E-10 70.0 8.8 81 3-83 1-96 (386)
186 PRK12549 shikimate 5-dehydroge 98.0 1.5E-05 3.3E-10 67.2 7.5 66 2-67 129-203 (284)
187 PRK06823 ornithine cyclodeamin 98.0 1.5E-05 3.2E-10 68.2 7.4 67 2-68 130-204 (315)
188 PLN02494 adenosylhomocysteinas 98.0 3.7E-05 7.9E-10 68.5 9.6 67 2-69 256-322 (477)
189 PRK08618 ornithine cyclodeamin 98.0 2.2E-05 4.7E-10 67.7 8.1 67 2-68 129-204 (325)
190 PRK06046 alanine dehydrogenase 98.0 1.7E-05 3.7E-10 68.4 7.4 66 2-68 131-205 (326)
191 PRK06932 glycerate dehydrogena 98.0 2E-05 4.3E-10 67.5 7.7 66 1-72 148-213 (314)
192 PRK06487 glycerate dehydrogena 98.0 2.1E-05 4.6E-10 67.5 7.9 64 2-72 150-213 (317)
193 PRK09496 trkA potassium transp 98.0 1.4E-05 3E-10 72.0 7.0 70 1-70 1-79 (453)
194 PRK09310 aroDE bifunctional 3- 98.0 1.9E-05 4.1E-10 71.5 7.8 67 1-68 333-402 (477)
195 PRK00258 aroE shikimate 5-dehy 98.0 1.7E-05 3.6E-10 66.9 7.0 66 2-67 125-196 (278)
196 PF02423 OCD_Mu_crystall: Orni 98.0 1.4E-05 3.1E-10 68.4 6.7 67 2-68 130-204 (313)
197 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.8E-05 3.9E-10 63.0 6.8 68 1-68 29-109 (194)
198 PTZ00117 malate dehydrogenase; 98.0 1.6E-05 3.5E-10 68.2 6.9 63 1-64 6-81 (319)
199 PRK11579 putative oxidoreducta 98.0 4.9E-05 1.1E-09 66.1 9.9 115 1-117 5-138 (346)
200 PRK06199 ornithine cyclodeamin 98.0 1.9E-05 4.2E-10 69.2 7.3 66 2-67 157-234 (379)
201 PLN02306 hydroxypyruvate reduc 98.0 3.1E-05 6.7E-10 68.0 8.3 72 1-72 166-252 (386)
202 COG2423 Predicted ornithine cy 98.0 2.5E-05 5.4E-10 66.8 7.4 67 2-68 132-207 (330)
203 PTZ00082 L-lactate dehydrogena 98.0 2.3E-05 4.9E-10 67.3 7.2 63 1-64 7-82 (321)
204 PRK07589 ornithine cyclodeamin 98.0 2.6E-05 5.7E-10 67.4 7.5 66 2-67 131-204 (346)
205 PRK08300 acetaldehyde dehydrog 98.0 0.00017 3.7E-09 60.9 12.1 83 1-83 5-99 (302)
206 PRK14106 murD UDP-N-acetylmura 97.9 0.00014 3E-09 65.6 12.1 130 1-132 6-146 (450)
207 PF02254 TrkA_N: TrkA-N domain 97.9 0.00018 3.8E-09 52.2 10.3 69 3-71 1-77 (116)
208 PRK00066 ldh L-lactate dehydro 97.9 2.9E-05 6.3E-10 66.5 7.1 65 1-65 7-82 (315)
209 PRK06718 precorrin-2 dehydroge 97.9 0.00027 5.9E-09 56.6 12.2 72 1-72 11-86 (202)
210 PRK00141 murD UDP-N-acetylmura 97.9 0.00021 4.5E-09 64.9 12.6 132 1-132 16-159 (473)
211 PRK02472 murD UDP-N-acetylmura 97.9 0.00019 4.2E-09 64.6 12.2 129 2-132 7-146 (447)
212 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 0.001 2.2E-08 53.9 15.0 152 1-172 24-212 (217)
213 PF13460 NAD_binding_10: NADH( 97.9 3.4E-05 7.4E-10 60.5 6.3 62 3-66 1-70 (183)
214 COG0771 MurD UDP-N-acetylmuram 97.9 0.00019 4.1E-09 63.9 11.3 132 1-134 8-150 (448)
215 TIGR00518 alaDH alanine dehydr 97.9 4.1E-05 8.8E-10 67.1 7.1 64 2-65 169-239 (370)
216 cd05293 LDH_1 A subgroup of L- 97.9 4.6E-05 1E-09 65.2 7.1 64 1-65 4-80 (312)
217 PRK10669 putative cation:proto 97.9 0.00012 2.5E-09 67.9 10.2 70 2-71 419-496 (558)
218 PRK01710 murD UDP-N-acetylmura 97.8 0.0003 6.5E-09 63.6 12.6 130 1-132 15-155 (458)
219 cd01339 LDH-like_MDH L-lactate 97.8 4.1E-05 9E-10 65.2 6.7 62 3-65 1-75 (300)
220 TIGR02356 adenyl_thiF thiazole 97.8 0.00016 3.4E-09 58.0 9.3 86 2-87 23-145 (202)
221 TIGR01850 argC N-acetyl-gamma- 97.8 0.0001 2.2E-09 64.1 8.8 83 1-83 1-97 (346)
222 TIGR01809 Shik-DH-AROM shikima 97.8 5.4E-05 1.2E-09 63.9 6.8 67 2-68 127-202 (282)
223 CHL00194 ycf39 Ycf39; Provisio 97.8 6.5E-05 1.4E-09 64.5 7.3 65 1-65 1-73 (317)
224 PLN02819 lysine-ketoglutarate 97.8 0.00013 2.9E-09 71.0 10.1 84 2-85 571-679 (1042)
225 TIGR01761 thiaz-red thiazoliny 97.8 0.00017 3.8E-09 62.3 9.8 86 1-87 4-100 (343)
226 PRK04207 glyceraldehyde-3-phos 97.8 0.00019 4.1E-09 62.2 10.0 83 1-83 2-107 (341)
227 cd00650 LDH_MDH_like NAD-depen 97.8 6E-05 1.3E-09 63.0 6.3 62 3-64 1-78 (263)
228 PRK10206 putative oxidoreducta 97.8 0.00013 2.9E-09 63.4 8.6 118 1-118 2-139 (344)
229 PRK00421 murC UDP-N-acetylmura 97.8 0.00041 8.8E-09 62.8 12.0 120 1-121 8-134 (461)
230 PRK01438 murD UDP-N-acetylmura 97.8 0.00022 4.8E-09 64.8 10.3 131 2-132 18-160 (480)
231 PRK03659 glutathione-regulated 97.7 0.00021 4.5E-09 66.7 10.1 72 1-72 401-480 (601)
232 PRK15076 alpha-galactosidase; 97.7 4.6E-05 1E-09 68.0 5.4 67 1-67 2-86 (431)
233 cd01487 E1_ThiF_like E1_ThiF_l 97.7 0.00032 7E-09 54.8 9.5 85 2-86 1-122 (174)
234 smart00859 Semialdhyde_dh Semi 97.7 0.00015 3.2E-09 53.2 7.0 84 2-85 1-99 (122)
235 TIGR01087 murD UDP-N-acetylmur 97.7 0.0005 1.1E-08 61.7 11.7 128 2-132 1-140 (433)
236 cd05294 LDH-like_MDH_nadp A la 97.7 6.9E-05 1.5E-09 64.1 5.9 65 1-66 1-82 (309)
237 TIGR01470 cysG_Nterm siroheme 97.7 0.0015 3.3E-08 52.4 13.3 117 2-119 11-143 (205)
238 PRK04308 murD UDP-N-acetylmura 97.7 0.0011 2.3E-08 59.8 13.8 132 1-132 6-148 (445)
239 PF05368 NmrA: NmrA-like famil 97.7 0.00026 5.6E-09 57.9 9.1 64 3-66 1-74 (233)
240 PRK01390 murD UDP-N-acetylmura 97.7 0.00066 1.4E-08 61.4 12.5 131 2-132 11-152 (460)
241 PRK14175 bifunctional 5,10-met 97.7 0.00055 1.2E-08 57.5 10.9 116 2-143 160-276 (286)
242 PRK00436 argC N-acetyl-gamma-g 97.7 0.00019 4.2E-09 62.3 8.5 84 1-84 3-98 (343)
243 cd00300 LDH_like L-lactate deh 97.7 0.00012 2.7E-09 62.3 7.0 64 3-67 1-77 (300)
244 PRK12475 thiamine/molybdopteri 97.7 0.00031 6.7E-09 60.8 9.5 86 2-87 26-150 (338)
245 PRK03803 murD UDP-N-acetylmura 97.7 0.00078 1.7E-08 60.7 12.3 130 2-133 8-147 (448)
246 PRK03562 glutathione-regulated 97.6 0.00026 5.6E-09 66.3 9.2 71 2-72 402-480 (621)
247 PRK02006 murD UDP-N-acetylmura 97.6 0.0016 3.5E-08 59.5 14.0 133 2-134 9-161 (498)
248 cd01483 E1_enzyme_family Super 97.6 0.00058 1.2E-08 51.5 9.4 87 2-88 1-124 (143)
249 PLN02602 lactate dehydrogenase 97.6 0.00016 3.4E-09 62.7 7.0 64 1-65 38-114 (350)
250 PF10100 DUF2338: Uncharacteri 97.6 0.031 6.6E-07 48.8 20.6 232 2-235 3-394 (429)
251 PRK06719 precorrin-2 dehydroge 97.6 0.0015 3.3E-08 50.1 11.3 69 2-72 15-86 (157)
252 cd05290 LDH_3 A subgroup of L- 97.6 0.00019 4.2E-09 61.2 6.6 64 2-65 1-77 (307)
253 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.00033 7.1E-09 57.1 7.7 71 1-72 32-122 (227)
254 TIGR01082 murC UDP-N-acetylmur 97.6 0.0011 2.3E-08 59.8 11.6 119 2-121 1-126 (448)
255 cd05191 NAD_bind_amino_acid_DH 97.5 0.00031 6.8E-09 48.1 6.2 44 1-70 24-68 (86)
256 TIGR02354 thiF_fam2 thiamine b 97.5 0.00037 8.1E-09 55.7 7.3 31 2-32 23-54 (200)
257 PF13380 CoA_binding_2: CoA bi 97.5 0.00097 2.1E-08 48.5 8.5 75 1-80 1-81 (116)
258 PRK05086 malate dehydrogenase; 97.5 0.00035 7.7E-09 59.8 7.2 66 1-66 1-79 (312)
259 PRK02705 murD UDP-N-acetylmura 97.5 0.001 2.3E-08 60.0 10.7 130 2-132 2-147 (459)
260 cd00757 ThiF_MoeB_HesA_family 97.4 0.0011 2.5E-08 54.1 9.3 87 2-88 23-146 (228)
261 PRK07688 thiamine/molybdopteri 97.4 0.0011 2.3E-08 57.5 9.3 86 2-87 26-150 (339)
262 PRK06349 homoserine dehydrogen 97.4 0.00057 1.2E-08 61.1 7.8 83 1-83 4-102 (426)
263 PRK08644 thiamine biosynthesis 97.4 0.0014 3.1E-08 52.9 9.4 84 2-85 30-150 (212)
264 PRK14982 acyl-ACP reductase; P 97.4 0.00054 1.2E-08 59.0 7.1 86 1-86 156-247 (340)
265 KOG2741 Dimeric dihydrodiol de 97.4 0.0013 2.8E-08 55.9 9.1 116 2-117 8-146 (351)
266 PF00899 ThiF: ThiF family; I 97.4 0.00053 1.2E-08 51.2 6.2 88 1-88 3-127 (135)
267 PRK05472 redox-sensing transcr 97.4 0.00038 8.2E-09 56.3 5.4 78 2-80 86-172 (213)
268 cd05311 NAD_bind_2_malic_enz N 97.3 0.00083 1.8E-08 54.8 7.4 67 1-67 26-108 (226)
269 PF10728 DUF2520: Domain of un 97.3 0.0019 4.2E-08 48.0 8.7 126 100-232 4-129 (132)
270 COG0169 AroE Shikimate 5-dehyd 97.3 0.0006 1.3E-08 57.3 6.6 66 2-67 128-201 (283)
271 PF00393 6PGD: 6-phosphoglucon 97.3 0.0008 1.7E-08 56.4 7.2 96 132-227 1-106 (291)
272 PF02629 CoA_binding: CoA bind 97.3 0.00033 7.1E-09 49.1 4.2 78 2-80 5-88 (96)
273 PRK09496 trkA potassium transp 97.3 0.0011 2.4E-08 59.7 8.7 68 1-68 232-309 (453)
274 PF03447 NAD_binding_3: Homose 97.3 0.0017 3.8E-08 47.1 8.2 105 7-125 1-116 (117)
275 PRK04690 murD UDP-N-acetylmura 97.3 0.0034 7.5E-08 56.9 11.8 131 2-132 10-153 (468)
276 PRK04663 murD UDP-N-acetylmura 97.3 0.0052 1.1E-07 55.3 12.3 129 2-133 9-147 (438)
277 PRK12548 shikimate 5-dehydroge 97.3 0.0011 2.3E-08 56.3 7.3 66 2-67 128-210 (289)
278 TIGR01759 MalateDH-SF1 malate 97.3 0.00082 1.8E-08 57.7 6.7 65 1-65 4-88 (323)
279 cd01492 Aos1_SUMO Ubiquitin ac 97.3 0.0031 6.7E-08 50.4 9.5 89 1-89 22-146 (197)
280 COG0039 Mdh Malate/lactate deh 97.2 0.00059 1.3E-08 57.9 5.6 64 1-64 1-77 (313)
281 COG1064 AdhP Zn-dependent alco 97.2 0.012 2.7E-07 50.5 13.6 70 2-72 169-244 (339)
282 cd01337 MDH_glyoxysomal_mitoch 97.2 0.00088 1.9E-08 57.2 6.7 66 1-66 1-78 (310)
283 PRK14874 aspartate-semialdehyd 97.2 0.0011 2.4E-08 57.3 7.1 83 1-83 2-92 (334)
284 PRK08762 molybdopterin biosynt 97.2 0.0026 5.5E-08 56.1 9.5 87 2-88 137-260 (376)
285 PF08546 ApbA_C: Ketopantoate 97.2 0.0043 9.4E-08 45.5 9.3 70 146-232 40-123 (125)
286 PRK14189 bifunctional 5,10-met 97.2 0.0019 4.1E-08 54.2 8.1 117 2-144 160-277 (285)
287 cd01338 MDH_choloroplast_like 97.2 0.0009 1.9E-08 57.5 6.3 65 1-65 3-87 (322)
288 PLN02383 aspartate semialdehyd 97.2 0.0014 3E-08 56.9 7.3 83 1-83 8-98 (344)
289 PF02056 Glyco_hydro_4: Family 97.2 0.00068 1.5E-08 53.1 4.7 67 2-68 1-85 (183)
290 PRK01368 murD UDP-N-acetylmura 97.1 0.0067 1.5E-07 54.8 11.5 129 2-132 8-142 (454)
291 PRK14027 quinate/shikimate deh 97.1 0.0015 3.3E-08 55.1 6.9 66 2-67 129-205 (283)
292 PRK10792 bifunctional 5,10-met 97.1 0.0051 1.1E-07 51.6 9.7 116 2-143 161-277 (285)
293 KOG0068 D-3-phosphoglycerate d 97.1 0.003 6.6E-08 53.5 8.3 80 2-83 148-234 (406)
294 PF01262 AlaDh_PNT_C: Alanine 97.1 0.0019 4.1E-08 50.2 6.8 64 1-64 21-110 (168)
295 PRK06153 hypothetical protein; 97.1 0.0037 7.9E-08 54.5 9.1 86 2-87 178-300 (393)
296 PRK08328 hypothetical protein; 97.1 0.0043 9.4E-08 50.8 9.2 87 2-88 29-153 (231)
297 PLN00112 malate dehydrogenase 97.1 0.0015 3.3E-08 58.2 6.9 65 2-66 102-186 (444)
298 PRK05442 malate dehydrogenase; 97.1 0.001 2.2E-08 57.3 5.5 65 1-65 5-89 (326)
299 PRK02318 mannitol-1-phosphate 97.1 0.00092 2E-08 58.9 5.3 68 1-68 1-92 (381)
300 cd01336 MDH_cytoplasmic_cytoso 97.1 0.0013 2.9E-08 56.6 6.1 65 1-65 3-87 (325)
301 PLN02968 Probable N-acetyl-gam 97.1 0.0021 4.6E-08 56.5 7.4 82 1-83 39-132 (381)
302 PRK12550 shikimate 5-dehydroge 97.0 0.0019 4.1E-08 54.2 6.7 64 2-67 124-189 (272)
303 PF13241 NAD_binding_7: Putati 97.0 0.0023 5E-08 45.4 6.2 67 2-72 9-76 (103)
304 COG0289 DapB Dihydrodipicolina 97.0 0.021 4.5E-07 47.1 12.4 121 1-140 3-139 (266)
305 PRK03806 murD UDP-N-acetylmura 97.0 0.011 2.4E-07 53.1 12.0 128 2-132 8-143 (438)
306 PRK09424 pntA NAD(P) transhydr 97.0 0.0023 5.1E-08 58.1 7.6 44 2-45 167-210 (509)
307 PRK00676 hemA glutamyl-tRNA re 97.0 0.0017 3.8E-08 55.8 6.4 57 2-63 176-233 (338)
308 KOG1502 Flavonol reductase/cin 97.0 0.002 4.3E-08 54.9 6.6 63 1-63 7-85 (327)
309 TIGR01546 GAPDH-II_archae glyc 97.0 0.0026 5.7E-08 54.7 7.4 83 3-85 1-108 (333)
310 TIGR00561 pntA NAD(P) transhyd 97.0 0.0035 7.6E-08 56.9 8.4 85 2-86 166-285 (511)
311 TIGR02355 moeB molybdopterin s 97.0 0.0035 7.7E-08 51.6 7.8 87 2-88 26-149 (240)
312 cd00704 MDH Malate dehydrogena 97.0 0.0011 2.4E-08 57.0 5.0 64 2-65 2-85 (323)
313 PRK15116 sulfur acceptor prote 97.0 0.036 7.9E-07 46.3 13.8 117 2-118 32-187 (268)
314 PLN00106 malate dehydrogenase 97.0 0.0026 5.6E-08 54.6 7.2 65 1-65 19-95 (323)
315 cd05197 GH4_glycoside_hydrolas 97.0 0.002 4.3E-08 57.5 6.6 68 1-68 1-86 (425)
316 PLN00141 Tic62-NAD(P)-related 97.0 0.0027 6E-08 52.5 7.0 40 1-40 18-58 (251)
317 COG2344 AT-rich DNA-binding pr 97.0 0.0016 3.4E-08 50.6 5.0 78 2-80 86-172 (211)
318 PRK05597 molybdopterin biosynt 97.0 0.0063 1.4E-07 53.1 9.5 88 2-89 30-154 (355)
319 COG4408 Uncharacterized protei 97.0 0.2 4.3E-06 42.7 17.8 232 2-235 6-396 (431)
320 TIGR00978 asd_EA aspartate-sem 97.0 0.0031 6.6E-08 54.8 7.4 83 1-83 1-102 (341)
321 COG0002 ArgC Acetylglutamate s 97.0 0.0038 8.3E-08 53.3 7.7 83 1-83 3-99 (349)
322 cd05298 GH4_GlvA_pagL_like Gly 96.9 0.0027 5.8E-08 56.8 6.9 67 1-67 1-85 (437)
323 cd01485 E1-1_like Ubiquitin ac 96.9 0.0066 1.4E-07 48.5 8.6 88 1-88 20-148 (198)
324 PRK05690 molybdopterin biosynt 96.9 0.006 1.3E-07 50.4 8.5 86 2-87 34-156 (245)
325 TIGR01081 mpl UDP-N-acetylmura 96.9 0.012 2.7E-07 53.0 11.2 121 2-122 1-130 (448)
326 TIGR03466 HpnA hopanoid-associ 96.9 0.0016 3.5E-08 55.7 5.3 65 1-65 1-73 (328)
327 PRK12749 quinate/shikimate deh 96.9 0.0034 7.4E-08 53.1 7.1 66 2-67 126-207 (288)
328 PRK05600 thiamine biosynthesis 96.9 0.0076 1.7E-07 52.9 9.4 86 2-87 43-165 (370)
329 PRK12769 putative oxidoreducta 96.9 0.0042 9.1E-08 58.7 8.2 67 1-67 328-423 (654)
330 PRK14192 bifunctional 5,10-met 96.9 0.0036 7.8E-08 52.8 6.9 116 2-144 161-277 (283)
331 cd05296 GH4_P_beta_glucosidase 96.9 0.0032 6.9E-08 56.1 6.9 67 1-67 1-86 (419)
332 TIGR01851 argC_other N-acetyl- 96.9 0.0073 1.6E-07 51.3 8.7 71 2-83 3-78 (310)
333 PRK11863 N-acetyl-gamma-glutam 96.9 0.0032 7E-08 53.7 6.6 73 1-83 3-79 (313)
334 PRK12809 putative oxidoreducta 96.9 0.0042 9.2E-08 58.5 8.1 67 1-67 311-406 (639)
335 PF00070 Pyr_redox: Pyridine n 96.8 0.0028 6E-08 42.7 5.0 33 2-34 1-33 (80)
336 PTZ00325 malate dehydrogenase; 96.8 0.0025 5.5E-08 54.7 5.8 65 2-66 10-86 (321)
337 cd01489 Uba2_SUMO Ubiquitin ac 96.8 0.01 2.2E-07 50.8 9.3 87 2-88 1-125 (312)
338 PRK14191 bifunctional 5,10-met 96.8 0.0078 1.7E-07 50.5 8.4 116 2-143 159-275 (285)
339 PRK06270 homoserine dehydrogen 96.8 0.0052 1.1E-07 53.4 7.7 83 1-83 3-123 (341)
340 PRK05671 aspartate-semialdehyd 96.8 0.0035 7.6E-08 54.2 6.6 81 1-83 5-95 (336)
341 COG0493 GltD NADPH-dependent g 96.8 0.0041 9E-08 55.9 7.3 67 1-67 124-219 (457)
342 TIGR01757 Malate-DH_plant mala 96.8 0.0039 8.5E-08 54.7 6.9 64 2-65 46-129 (387)
343 TIGR01772 MDH_euk_gproteo mala 96.8 0.0031 6.8E-08 53.9 6.1 65 2-66 1-77 (312)
344 TIGR01771 L-LDH-NAD L-lactate 96.8 0.0025 5.5E-08 54.2 5.4 62 5-66 1-74 (299)
345 PRK08664 aspartate-semialdehyd 96.8 0.0058 1.3E-07 53.2 7.6 83 1-84 4-106 (349)
346 cd01484 E1-2_like Ubiquitin ac 96.7 0.014 3.1E-07 47.8 9.3 87 2-88 1-126 (234)
347 PRK14573 bifunctional D-alanyl 96.7 0.021 4.5E-07 55.4 11.8 119 2-121 6-131 (809)
348 COG1648 CysG Siroheme synthase 96.7 0.054 1.2E-06 43.6 12.3 71 1-72 13-88 (210)
349 cd05212 NAD_bind_m-THF_DH_Cycl 96.7 0.01 2.2E-07 44.6 7.6 69 3-85 31-100 (140)
350 PRK08223 hypothetical protein; 96.7 0.016 3.5E-07 48.8 9.5 87 2-88 29-154 (287)
351 COG0702 Predicted nucleoside-d 96.7 0.0051 1.1E-07 51.1 6.5 65 1-66 1-73 (275)
352 TIGR01318 gltD_gamma_fam gluta 96.7 0.0087 1.9E-07 54.3 8.3 67 2-68 143-238 (467)
353 PLN02477 glutamate dehydrogena 96.7 0.12 2.7E-06 45.8 15.2 66 1-67 207-292 (410)
354 TIGR03649 ergot_EASG ergot alk 96.7 0.0033 7.2E-08 52.9 5.3 62 2-66 1-77 (285)
355 TIGR01296 asd_B aspartate-semi 96.6 0.0046 9.9E-08 53.6 6.1 83 2-85 1-92 (339)
356 PRK06728 aspartate-semialdehyd 96.6 0.0064 1.4E-07 52.6 6.9 82 1-83 6-97 (347)
357 PF02882 THF_DHG_CYH_C: Tetrah 96.6 0.0056 1.2E-07 47.0 5.8 73 1-87 37-110 (160)
358 PRK12814 putative NADPH-depend 96.6 0.0078 1.7E-07 56.9 7.9 67 1-67 194-289 (652)
359 PF07479 NAD_Gly3P_dh_C: NAD-d 96.6 0.00054 1.2E-08 52.0 0.1 103 130-232 21-138 (149)
360 PLN02427 UDP-apiose/xylose syn 96.6 0.0054 1.2E-07 54.1 6.4 64 1-64 15-94 (386)
361 KOG0399 Glutamate synthase [Am 96.6 0.0079 1.7E-07 58.6 7.4 66 2-67 1787-1881(2142)
362 PRK08040 putative semialdehyde 96.6 0.0058 1.3E-07 52.8 6.2 82 1-83 5-95 (336)
363 PRK14183 bifunctional 5,10-met 96.6 0.026 5.6E-07 47.3 9.8 116 2-143 159-275 (281)
364 PLN02520 bifunctional 3-dehydr 96.6 0.0081 1.7E-07 55.3 7.4 66 2-67 381-450 (529)
365 PRK11908 NAD-dependent epimera 96.6 0.0061 1.3E-07 52.9 6.3 63 1-63 2-75 (347)
366 TIGR01758 MDH_euk_cyt malate d 96.5 0.0062 1.4E-07 52.4 6.2 64 2-65 1-84 (324)
367 COG1063 Tdh Threonine dehydrog 96.5 0.025 5.4E-07 49.3 9.9 71 2-72 171-254 (350)
368 COG4091 Predicted homoserine d 96.5 0.033 7.1E-07 47.7 10.0 162 2-164 19-238 (438)
369 PRK00711 D-amino acid dehydrog 96.5 0.004 8.7E-08 55.4 5.0 34 1-34 1-34 (416)
370 PRK12409 D-amino acid dehydrog 96.5 0.004 8.7E-08 55.3 4.9 32 2-33 3-34 (410)
371 PRK05562 precorrin-2 dehydroge 96.5 0.18 3.8E-06 41.0 13.8 71 1-72 26-101 (223)
372 TIGR01317 GOGAT_sm_gam glutama 96.5 0.042 9.1E-07 50.1 11.5 126 1-126 144-313 (485)
373 PRK06753 hypothetical protein; 96.5 0.0041 8.8E-08 54.5 4.8 34 1-34 1-34 (373)
374 PRK09414 glutamate dehydrogena 96.5 0.15 3.3E-06 45.7 14.5 71 1-72 233-327 (445)
375 PRK07878 molybdopterin biosynt 96.4 0.016 3.6E-07 51.2 8.4 87 2-88 44-167 (392)
376 COG1090 Predicted nucleoside-d 96.4 0.005 1.1E-07 51.0 4.7 57 7-63 6-63 (297)
377 PRK12779 putative bifunctional 96.4 0.0094 2E-07 58.5 7.3 66 1-66 307-402 (944)
378 PRK14186 bifunctional 5,10-met 96.4 0.054 1.2E-06 45.8 10.9 120 2-143 160-280 (297)
379 PRK06182 short chain dehydroge 96.4 0.014 3E-07 48.7 7.4 42 2-43 5-47 (273)
380 PLN03209 translocon at the inn 96.4 0.011 2.3E-07 54.5 7.1 39 2-40 82-121 (576)
381 PF13450 NAD_binding_8: NAD(P) 96.4 0.0065 1.4E-07 39.6 4.2 30 5-34 1-30 (68)
382 PRK07411 hypothetical protein; 96.4 0.019 4E-07 50.9 8.3 87 2-88 40-163 (390)
383 TIGR00873 gnd 6-phosphoglucona 96.4 0.034 7.3E-07 50.4 10.0 105 132-236 312-431 (467)
384 PRK14176 bifunctional 5,10-met 96.4 0.015 3.1E-07 48.9 7.1 72 2-87 166-238 (287)
385 PRK09287 6-phosphogluconate de 96.3 0.031 6.8E-07 50.4 9.7 104 132-235 304-422 (459)
386 TIGR03366 HpnZ_proposed putati 96.3 0.16 3.4E-06 42.7 13.4 71 2-72 123-203 (280)
387 PRK08017 oxidoreductase; Provi 96.3 0.011 2.3E-07 48.8 6.2 42 2-43 4-46 (256)
388 cd08230 glucose_DH Glucose deh 96.3 0.096 2.1E-06 45.6 12.4 71 2-72 175-254 (355)
389 cd00755 YgdL_like Family of ac 96.3 0.1 2.2E-06 42.7 11.6 127 2-128 13-182 (231)
390 PRK05993 short chain dehydroge 96.3 0.013 2.9E-07 49.1 6.8 42 2-43 6-48 (277)
391 PRK08374 homoserine dehydrogen 96.3 0.016 3.5E-07 50.2 7.4 83 1-83 3-120 (336)
392 PRK03815 murD UDP-N-acetylmura 96.3 0.01 2.2E-07 52.8 6.1 59 1-63 1-61 (401)
393 PRK12771 putative glutamate sy 96.3 0.012 2.7E-07 54.6 6.9 67 2-68 139-234 (564)
394 PRK06392 homoserine dehydrogen 96.3 0.017 3.8E-07 49.7 7.3 84 1-84 1-115 (326)
395 PF03720 UDPG_MGDP_dh_C: UDP-g 96.2 0.015 3.3E-07 41.4 5.8 61 10-70 17-80 (106)
396 PLN02662 cinnamyl-alcohol dehy 96.2 0.02 4.3E-07 48.9 7.5 65 1-65 5-85 (322)
397 PRK05884 short chain dehydroge 96.2 0.012 2.6E-07 47.8 5.8 41 1-41 1-42 (223)
398 PRK14170 bifunctional 5,10-met 96.2 0.092 2E-06 44.1 11.0 117 2-144 159-276 (284)
399 TIGR02717 AcCoA-syn-alpha acet 96.2 0.023 5E-07 51.2 7.9 66 2-72 9-80 (447)
400 PRK12810 gltD glutamate syntha 96.1 0.022 4.7E-07 51.8 7.8 67 1-67 144-239 (471)
401 cd01491 Ube1_repeat1 Ubiquitin 96.1 0.043 9.3E-07 46.3 8.9 86 2-87 21-139 (286)
402 COG0686 Ald Alanine dehydrogen 96.1 0.0095 2.1E-07 50.1 4.9 63 2-64 170-239 (371)
403 PRK07538 hypothetical protein; 96.1 0.0074 1.6E-07 53.7 4.6 34 1-34 1-34 (413)
404 PRK10538 malonic semialdehyde 96.1 0.014 3E-07 48.1 5.9 41 1-41 1-42 (248)
405 PLN02695 GDP-D-mannose-3',5'-e 96.1 0.0074 1.6E-07 53.0 4.4 64 1-64 22-93 (370)
406 COG4569 MhpF Acetaldehyde dehy 96.1 0.071 1.5E-06 42.2 9.1 82 2-83 6-100 (310)
407 PF01494 FAD_binding_3: FAD bi 96.1 0.0094 2E-07 51.3 4.8 33 2-34 3-35 (356)
408 PRK05693 short chain dehydroge 96.1 0.018 4E-07 48.1 6.4 43 1-43 1-45 (274)
409 PLN02896 cinnamyl-alcohol dehy 96.0 0.022 4.8E-07 49.6 7.1 64 1-64 11-87 (353)
410 COG0773 MurC UDP-N-acetylmuram 96.0 0.031 6.7E-07 49.8 7.9 124 2-127 9-141 (459)
411 PRK09880 L-idonate 5-dehydroge 96.0 0.097 2.1E-06 45.3 11.0 82 2-83 172-264 (343)
412 COG0451 WcaG Nucleoside-diphos 96.0 0.012 2.7E-07 49.8 5.3 63 1-64 1-72 (314)
413 PRK14171 bifunctional 5,10-met 96.0 0.099 2.1E-06 44.0 10.4 117 2-144 161-278 (288)
414 PRK14190 bifunctional 5,10-met 96.0 0.083 1.8E-06 44.5 9.9 116 2-143 160-276 (284)
415 PRK14166 bifunctional 5,10-met 96.0 0.095 2.1E-06 44.0 10.2 116 2-143 159-275 (282)
416 PRK14177 bifunctional 5,10-met 96.0 0.1 2.3E-06 43.8 10.4 111 2-142 161-272 (284)
417 PRK14178 bifunctional 5,10-met 96.0 0.021 4.6E-07 47.8 6.2 116 2-144 154-270 (279)
418 PRK08163 salicylate hydroxylas 96.0 0.0097 2.1E-07 52.6 4.6 34 1-34 5-38 (396)
419 PRK14187 bifunctional 5,10-met 96.0 0.11 2.3E-06 43.9 10.5 120 2-144 162-282 (294)
420 PRK07588 hypothetical protein; 96.0 0.01 2.2E-07 52.4 4.7 34 1-34 1-34 (391)
421 COG0300 DltE Short-chain dehyd 96.0 0.016 3.5E-07 48.2 5.4 39 3-41 9-48 (265)
422 TIGR03219 salicylate_mono sali 96.0 0.01 2.2E-07 52.9 4.6 34 1-34 1-35 (414)
423 PLN02657 3,8-divinyl protochlo 95.9 0.0084 1.8E-07 53.1 4.0 36 1-36 61-97 (390)
424 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.032 6.9E-07 44.1 6.7 86 2-87 64-158 (197)
425 TIGR03855 NAD_NadX aspartate d 95.9 0.098 2.1E-06 42.7 9.8 56 26-81 5-64 (229)
426 PRK14169 bifunctional 5,10-met 95.9 0.11 2.5E-06 43.6 10.2 116 2-143 158-274 (282)
427 PRK12320 hypothetical protein; 95.9 0.014 3.1E-07 55.1 5.3 63 1-66 1-70 (699)
428 COG0026 PurK Phosphoribosylami 95.8 0.021 4.5E-07 49.3 5.8 61 1-61 2-67 (375)
429 PLN02516 methylenetetrahydrofo 95.8 0.14 3E-06 43.4 10.6 122 2-144 169-292 (299)
430 COG1486 CelF Alpha-galactosida 95.8 0.021 4.5E-07 50.6 5.9 66 1-66 4-87 (442)
431 COG0136 Asd Aspartate-semialde 95.8 0.038 8.1E-07 47.3 7.2 85 1-85 2-97 (334)
432 cd01486 Apg7 Apg7 is an E1-lik 95.8 0.026 5.6E-07 47.7 6.2 31 2-32 1-32 (307)
433 PRK08309 short chain dehydroge 95.8 0.027 5.8E-07 44.1 5.9 41 1-41 1-41 (177)
434 PRK07236 hypothetical protein; 95.8 0.014 3E-07 51.5 4.7 34 1-34 7-40 (386)
435 TIGR01777 yfcH conserved hypot 95.7 0.015 3.2E-07 48.8 4.6 63 3-65 1-66 (292)
436 PRK06598 aspartate-semialdehyd 95.7 0.03 6.4E-07 48.9 6.5 82 1-83 2-96 (369)
437 PRK08306 dipicolinate synthase 95.7 0.033 7.1E-07 47.4 6.7 62 2-66 4-65 (296)
438 COG0499 SAM1 S-adenosylhomocys 95.7 0.033 7.1E-07 47.9 6.4 70 2-72 211-280 (420)
439 PRK08340 glucose-1-dehydrogena 95.7 0.025 5.5E-07 46.8 5.9 40 1-40 1-41 (259)
440 PRK05868 hypothetical protein; 95.7 0.016 3.4E-07 51.0 4.7 34 1-34 2-35 (372)
441 PRK05866 short chain dehydroge 95.7 0.042 9.1E-07 46.6 7.2 40 2-41 42-82 (293)
442 PLN02214 cinnamoyl-CoA reducta 95.7 0.034 7.4E-07 48.2 6.7 65 1-65 11-90 (342)
443 TIGR03693 ocin_ThiF_like putat 95.7 0.14 3E-06 47.4 10.6 109 2-114 131-263 (637)
444 KOG3007 Mu-crystallin [Amino a 95.6 0.027 5.9E-07 46.4 5.4 66 3-68 141-219 (333)
445 KOG0022 Alcohol dehydrogenase, 95.6 0.07 1.5E-06 45.2 7.8 71 2-72 195-278 (375)
446 cd01490 Ube1_repeat2 Ubiquitin 95.6 0.09 2E-06 47.0 9.1 88 2-89 1-134 (435)
447 PLN02650 dihydroflavonol-4-red 95.6 0.045 9.8E-07 47.5 7.2 64 1-64 6-85 (351)
448 PRK14181 bifunctional 5,10-met 95.6 0.25 5.5E-06 41.6 11.2 121 2-143 155-280 (287)
449 COG0654 UbiH 2-polyprenyl-6-me 95.6 0.014 3E-07 51.6 3.9 32 1-32 3-34 (387)
450 PF01266 DAO: FAD dependent ox 95.6 0.02 4.4E-07 49.2 5.0 31 2-32 1-31 (358)
451 TIGR01214 rmlD dTDP-4-dehydror 95.6 0.03 6.4E-07 47.0 5.8 56 2-65 1-59 (287)
452 TIGR02853 spore_dpaA dipicolin 95.6 0.031 6.6E-07 47.4 5.8 62 1-65 2-63 (287)
453 PRK11749 dihydropyrimidine deh 95.6 0.057 1.2E-06 48.9 7.9 33 1-33 141-173 (457)
454 PF04321 RmlD_sub_bind: RmlD s 95.5 0.016 3.6E-07 49.0 4.1 57 1-65 1-60 (286)
455 PRK07326 short chain dehydroge 95.5 0.033 7.2E-07 45.2 5.8 39 2-40 8-47 (237)
456 PRK14173 bifunctional 5,10-met 95.5 0.058 1.3E-06 45.4 7.2 119 2-143 157-276 (287)
457 PLN00016 RNA-binding protein; 95.5 0.03 6.6E-07 49.2 5.8 65 1-65 53-139 (378)
458 PLN02986 cinnamyl-alcohol dehy 95.5 0.06 1.3E-06 46.1 7.6 64 1-64 6-85 (322)
459 PLN02989 cinnamyl-alcohol dehy 95.5 0.051 1.1E-06 46.6 7.1 65 1-65 6-86 (325)
460 PTZ00142 6-phosphogluconate de 95.5 0.16 3.6E-06 46.0 10.5 105 130-234 316-435 (470)
461 PRK07364 2-octaprenyl-6-methox 95.5 0.019 4.1E-07 51.1 4.5 34 1-34 19-52 (415)
462 PRK15181 Vi polysaccharide bio 95.5 0.033 7.2E-07 48.4 5.9 34 1-34 16-50 (348)
463 PRK06101 short chain dehydroge 95.5 0.036 7.7E-07 45.3 5.8 40 3-42 4-44 (240)
464 PRK07231 fabG 3-ketoacyl-(acyl 95.5 0.036 7.8E-07 45.4 5.8 39 2-40 7-46 (251)
465 PRK05875 short chain dehydroge 95.4 0.053 1.1E-06 45.2 6.9 39 2-40 9-48 (276)
466 PRK14182 bifunctional 5,10-met 95.4 0.22 4.8E-06 41.8 10.3 116 2-143 159-275 (282)
467 PRK06847 hypothetical protein; 95.4 0.022 4.7E-07 49.9 4.6 33 2-34 6-38 (375)
468 PLN02686 cinnamoyl-CoA reducta 95.4 0.045 9.7E-07 48.1 6.6 39 1-39 54-93 (367)
469 PRK14172 bifunctional 5,10-met 95.4 0.068 1.5E-06 44.8 7.2 114 2-142 160-274 (278)
470 cd01488 Uba3_RUB Ubiquitin act 95.4 0.057 1.2E-06 45.7 6.8 69 2-70 1-102 (291)
471 PRK14851 hypothetical protein; 95.4 0.076 1.6E-06 50.3 8.3 87 2-88 45-170 (679)
472 PF00743 FMO-like: Flavin-bind 95.4 0.023 4.9E-07 52.4 4.7 34 1-34 2-35 (531)
473 TIGR01019 sucCoAalpha succinyl 95.4 0.2 4.3E-06 42.4 9.9 76 2-80 8-89 (286)
474 TIGR01202 bchC 2-desacetyl-2-h 95.4 0.42 9.1E-06 40.7 12.2 68 2-72 147-216 (308)
475 KOG1399 Flavin-containing mono 95.4 0.018 4E-07 51.6 4.0 34 1-34 7-40 (448)
476 PRK07877 hypothetical protein; 95.4 0.069 1.5E-06 50.8 7.9 86 2-88 109-231 (722)
477 PRK07060 short chain dehydroge 95.3 0.043 9.3E-07 44.8 5.9 40 2-41 11-51 (245)
478 PRK14193 bifunctional 5,10-met 95.3 0.074 1.6E-06 44.7 7.2 115 2-143 160-277 (284)
479 COG0190 FolD 5,10-methylene-te 95.3 0.19 4.1E-06 42.0 9.5 117 2-144 158-275 (283)
480 PRK14168 bifunctional 5,10-met 95.3 0.2 4.3E-06 42.5 9.7 123 2-144 163-290 (297)
481 KOG1014 17 beta-hydroxysteroid 95.3 0.03 6.6E-07 47.1 4.8 40 3-42 51-92 (312)
482 PRK05678 succinyl-CoA syntheta 95.3 0.18 3.9E-06 42.8 9.5 76 2-80 10-91 (291)
483 PRK07102 short chain dehydroge 95.3 0.045 9.7E-07 44.8 5.8 39 2-40 3-42 (243)
484 PLN02172 flavin-containing mon 95.3 0.025 5.5E-07 51.2 4.6 34 1-34 11-44 (461)
485 COG0334 GdhA Glutamate dehydro 95.2 0.072 1.6E-06 46.8 7.0 69 1-69 208-295 (411)
486 TIGR02130 dapB_plant dihydrodi 95.2 0.87 1.9E-05 38.2 13.2 80 2-82 2-97 (275)
487 cd05313 NAD_bind_2_Glu_DH NAD( 95.2 1.5 3.2E-05 36.4 14.5 30 1-30 39-69 (254)
488 PRK12778 putative bifunctional 95.2 0.088 1.9E-06 50.7 8.3 66 1-66 432-527 (752)
489 COG1062 AdhC Zn-dependent alco 95.2 0.23 5E-06 42.6 9.7 71 2-72 188-270 (366)
490 PRK14180 bifunctional 5,10-met 95.2 0.079 1.7E-06 44.5 7.0 115 2-143 160-275 (282)
491 PRK14852 hypothetical protein; 95.2 0.091 2E-06 51.3 8.2 87 2-88 334-459 (989)
492 KOG1495 Lactate dehydrogenase 95.2 0.051 1.1E-06 44.9 5.6 119 2-122 22-156 (332)
493 PRK14167 bifunctional 5,10-met 95.2 0.32 6.9E-06 41.2 10.6 120 2-142 159-283 (297)
494 PRK06475 salicylate hydroxylas 95.2 0.026 5.7E-07 50.0 4.4 33 2-34 4-36 (400)
495 PRK08013 oxidoreductase; Provi 95.2 0.028 6.2E-07 49.8 4.5 33 2-34 5-37 (400)
496 PRK05653 fabG 3-ketoacyl-(acyl 95.1 0.054 1.2E-06 44.0 5.9 38 2-39 7-45 (246)
497 PRK09291 short chain dehydroge 95.1 0.074 1.6E-06 43.7 6.7 40 2-41 4-44 (257)
498 TIGR01988 Ubi-OHases Ubiquinon 95.1 0.028 6E-07 49.3 4.4 33 2-34 1-33 (385)
499 TIGR02360 pbenz_hydroxyl 4-hyd 95.1 0.031 6.8E-07 49.4 4.6 33 2-34 4-36 (390)
500 PRK06953 short chain dehydroge 95.1 0.052 1.1E-06 43.8 5.5 43 1-43 1-45 (222)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=5.2e-54 Score=354.19 Aligned_cols=251 Identities=39% Similarity=0.665 Sum_probs=244.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.+++.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 79999999999999999999999999999999999 6767777999999999999999999999999999887
Q ss_pred ---------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163 73 ---------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 73 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 125 (257)
.++.+|..|+|+||+|++..+..|++.+++||+++.+++++|+|+.++.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 67778999999999999999999999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH
Q 025163 126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205 (257)
Q Consensus 126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 205 (257)
+|+.|.++.+|+++|.+...++.++.|++.++++.|+|++.+.++++.+...||.++++.+++++++|+|+|.++++.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251 (257)
Q Consensus 206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~ 251 (257)
++++.+.+++.++++|+...+.++|+.+.+.|++++||+++++.|+
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=8.4e-52 Score=334.81 Aligned_cols=255 Identities=42% Similarity=0.751 Sum_probs=247.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
++|||||+|.||..|+.+|.++||.|++|||+.++.++|++.|..++.+|.|+++++|+||.|||++..++.
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv 115 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV 115 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence 479999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred ---------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163 73 ---------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 73 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 125 (257)
.++.++..|+|+||+|+...+++|++.+++|||++.+++..++|+.+|++++|
T Consensus 116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence 56668999999999999999999999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH
Q 025163 126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205 (257)
Q Consensus 126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 205 (257)
+|..|.++.+|+++|.+.+..+..++|++.++++.|+|+.++.++++.+.+.|+.+.++.|.+..++|.|+|.+++|.||
T Consensus 196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD 275 (327)
T KOG0409|consen 196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD 275 (327)
T ss_pred ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 255 (257)
Q Consensus 206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~ 255 (257)
++++.+.+++.+.|+|+...+.|+|+...+.|+++.|++++++.++....
T Consensus 276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999887654
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=6.2e-48 Score=325.42 Aligned_cols=254 Identities=29% Similarity=0.499 Sum_probs=240.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
|||+|||+|.||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++..++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 8999999999999999999999999999999875 5778888988888999999999999999999866554
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 126 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 126 (257)
.+..+|+.|+|+|+++++..++.+++.++++|+++.+++++++|+.++.+++|+
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 556779999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163 127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206 (257)
Q Consensus 127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 206 (257)
|+.|+++.+|+++|++....+.++.|++.++++.|+|++.+.+++..+.+.|++++++.+++.+++|.++|+++.+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 255 (257)
Q Consensus 207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~ 255 (257)
+++.+++++.|+++|+.+.+.++|+.+.+.|++++|++++++++++..+
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~ 288 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMAN 288 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999987654
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-46 Score=318.60 Aligned_cols=254 Identities=30% Similarity=0.479 Sum_probs=238.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
+||+|||+|.||.+|+.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++...+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 389999999999999999999999999999999999999999998889999999999999999999875443
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 126 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 126 (257)
.+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 566789999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-cccCCCCCCCcccchHHHH
Q 025163 127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 205 (257)
Q Consensus 127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd 205 (257)
|+.|.++.+|+++|++...+..++.|++.++++.|+|++.+.++++.+...++.+..+.+ ++..++|.++|+++.+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999987767777766654 8899999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
++++.+++++.|+++|+.+.+.++|+.+.+.|+|++||+++++++++..
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 290 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSA 290 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999997643
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=2.7e-44 Score=303.77 Aligned_cols=247 Identities=29% Similarity=0.458 Sum_probs=230.1
Q ss_pred EEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH------------
Q 025163 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------------ 72 (257)
Q Consensus 5 iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------------ 72 (257)
|||+|.||.+|+++|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|||++...+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999999998888999999999999999998665432
Q ss_pred ----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCC
Q 025163 73 ----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVG 130 (257)
Q Consensus 73 ----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g 130 (257)
.+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++++|+.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 5556799999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-------cccCCCCCCCcccchHH
Q 025163 131 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ 203 (257)
Q Consensus 131 ~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 203 (257)
.++.+|+++|.+.+..+.++.|++.++++.|+|++.+.++++.+.+.++.+..+.+ .+..++|.++|++..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999998888887765543 24668999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163 204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251 (257)
Q Consensus 204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~ 251 (257)
||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|+++++++++
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 288 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence 999999999999999999999999999999999999999999998763
No 6
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.3e-43 Score=300.33 Aligned_cols=253 Identities=31% Similarity=0.533 Sum_probs=238.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---------
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------- 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------- 72 (257)
||+|||+|.||..++.+|+++||+|++|||++++.+++.+.|.....++.++++++|+||+|+|+....+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999999988888999999999999999998755432
Q ss_pred -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeC
Q 025163 73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 127 (257)
Q Consensus 73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g 127 (257)
.+..+|++|+++|+++++..+..+++.++++|+++.+++++++|+.++.+++++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 4556789999999999999899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHH
Q 025163 128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207 (257)
Q Consensus 128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 207 (257)
+.|.++.+|+++|.+....+.+++|++.++++.|+|++++.++++.+.+.++++..+.+++.+++|.++|+++++.||+.
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999998889999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
++.+++++.|+++|+++.+.++|+.+.+.|+|++||+++++++++.+
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~ 287 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLA 287 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998654
No 7
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=3.3e-43 Score=298.67 Aligned_cols=254 Identities=31% Similarity=0.561 Sum_probs=238.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
|||+|||+|.||..++.+|.+.|++|.+|||++++.+++.+.|+..++++.++++++|+||+|+|+....+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 689999999999999999999999999999999999999988988888999999999999999997665432
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 126 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 126 (257)
.+..+|++|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 344568999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163 127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206 (257)
Q Consensus 127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 206 (257)
|+.|.++.+|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.|+.++.+.+++.+++|.++|+++.+.||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999888999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
+++++++++.|+++|+++.+.+.++.+.+.|+|+.||+++++++++..
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 290 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLA 290 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999997654
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3e-43 Score=344.02 Aligned_cols=254 Identities=23% Similarity=0.388 Sum_probs=243.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
.||||||+|.||..||.+|.++||+|++|||++++.+++.+.|+..++|+.|+++++|+||+|+|++..++.
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 489999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred --------------------------HHHhcC--CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163 73 --------------------------AITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 124 (257)
Q Consensus 73 --------------------------~~~~~g--~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 124 (257)
.+..+| +.|+|+|++|++..+..|++.+++||+++.+++++++|+.++.+++
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 556678 8899999999999999999999999999999999999999999988
Q ss_pred Ee-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHH
Q 025163 125 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 203 (257)
Q Consensus 125 ~~-g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
++ |+.|+++.+|+++|++.+.++.++.|++.++++.|+|++.++++++.+++.||++.++.++++.++|.++|+++.+.
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~ 244 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence 65 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
||++++++++++.|+++|+.+.+.+.|+.+.+.|+|+.||+++++.+++..
T Consensus 245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~ 295 (1378)
T PLN02858 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVF 295 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999997643
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.7e-41 Score=330.38 Aligned_cols=254 Identities=27% Similarity=0.480 Sum_probs=240.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
++|||||+|+||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|||++...+.
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~ 404 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA 404 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence 479999999999999999999999999999999999999999988889999999999999999998776544
Q ss_pred --------------------------HHHh--cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163 73 --------------------------AITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 124 (257)
Q Consensus 73 --------------------------~~~~--~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 124 (257)
.+.. +|+.|+|+|+++++..+..|++.+++||+++.+++++++|+.++.+++
T Consensus 405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 4555 799999999999999999999999999999999999999999999988
Q ss_pred Ee-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHH
Q 025163 125 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 203 (257)
Q Consensus 125 ~~-g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (257)
++ |++|+++.+|+++|++...++.+++|++.++++.|+|++.+.++++.+++.||++.++.++++.++|.++|+++.+.
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~ 564 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV 564 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence 85 56999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
||++++++.+++.|+|+|+.+.+.++|+.+.+.|+|+.|++++++++++.+
T Consensus 565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~ 615 (1378)
T PLN02858 565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLT 615 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999997643
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.4e-39 Score=276.24 Aligned_cols=250 Identities=23% Similarity=0.292 Sum_probs=225.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc---CceEEEccCChHHHHH-----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALS----- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~----- 72 (257)
|||+|||+|.||..++.+|.++|++|++|||++++.+.+.+.|.....++++++++ +|+||+|+|++...+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 89999999999999999999999999999999999999998899888999998876 6999999999855443
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---Ce
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KA 123 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~ 123 (257)
.+..+|+.|+|+|+++++..+..|+ .+++||+++.+++++++|+.++. ++
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~ 159 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGY 159 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcE
Confidence 5556799999999999999999998 79999999999999999999997 78
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCCchhhhccCCcccCCCCCCCcccc
Q 025163 124 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAFPLK 200 (257)
Q Consensus 124 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ 200 (257)
+|+|++|.+..+|+++|++.+.++.++.|++.++++.| +|++.+.++++.+ ...|++++.+.+.+..+++ .+.++
T Consensus 160 ~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~~l~ 237 (299)
T PRK12490 160 VHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LAGIK 237 (299)
T ss_pred EEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hhhhh
Confidence 99999999999999999999999999999999999999 9999999999964 4788888887777765433 35688
Q ss_pred hHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163 201 HQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVKDL 253 (257)
Q Consensus 201 ~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~~~~d~~~l~~~~~~~ 253 (257)
.+.||+ +++++.+++.|+|+|++..+. .++....+++.|..|.+++.+++-..
T Consensus 238 ~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~ 294 (299)
T PRK12490 238 GYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGH 294 (299)
T ss_pred HHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCC
Confidence 999998 899999999999999999995 88888888888899999999988543
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=6.7e-39 Score=284.50 Aligned_cols=232 Identities=22% Similarity=0.339 Sum_probs=210.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhhc---CceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---~dvii~~v~~~~~~ 70 (257)
++|||||+|.||..||.+|+++||+|++|||++++.+.+.+. |.. .+.|++|+++. +|+||+|||++..+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 479999999999999999999999999999999999998764 543 67899999876 99999999999887
Q ss_pred HH-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHh
Q 025163 71 LS-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 119 (257)
Q Consensus 71 ~~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 119 (257)
+. .+..+|++|+++||+|++..++.|+ .+++||+++++++++|+|+.+
T Consensus 87 ~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~i 165 (493)
T PLN02350 87 DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKV 165 (493)
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHH
Confidence 65 6667899999999999999999999 899999999999999999999
Q ss_pred cCC------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCchhhhccCCccc
Q 025163 120 GKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDV---LDLGGIANPMFKGKGPTML 189 (257)
Q Consensus 120 ~~~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~---~~~~~~~s~~~~~~~~~~~ 189 (257)
+.+ ++|+|+.|+++.+|+++|.+.+..+.+++|++.++++ .|++++.+.++ ++.+...|++++.+.+.+.
T Consensus 166 a~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~ 245 (493)
T PLN02350 166 AAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFS 245 (493)
T ss_pred hhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHh
Confidence 954 8999999999999999999999999999999999999 59999999988 5677888999988888777
Q ss_pred CCC-CCCCcccchHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHH
Q 025163 190 QSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKA 233 (257)
Q Consensus 190 ~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~ 233 (257)
.++ +.++|.++.+.||++ +..+.+.+.|+|+|+ ..++...+...
T Consensus 246 ~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~ 297 (493)
T PLN02350 246 VKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSG 297 (493)
T ss_pred hcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 664 877899999999999 899999999999999 67766666554
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.3e-37 Score=263.00 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=218.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc---CceEEEccCChHHHHH-----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALS----- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~----- 72 (257)
|||+|||+|.||.+++++|.++|++|++|||++++.+++.+.|+..+.+++|+++. +|+||+|+|++...+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998875 6999999998744333
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC----C
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK----K 122 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~ 122 (257)
.+..+|+.|+|+|++|++..++.+. .+++||+++.+++++++|+.++. +
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~ 159 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDG 159 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCC
Confidence 5567799999999999999999996 79999999999999999999998 8
Q ss_pred eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcc-
Q 025163 123 AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK--SGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFP- 198 (257)
Q Consensus 123 ~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~--~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~- 198 (257)
++|+|++|+++.+|+++|.+.+..+.++.|++.++++ +|+|++.+.++++.+. ..|++++.+.+.+.. + +.+.
T Consensus 160 ~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~--~~~~~ 236 (301)
T PRK09599 160 YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-D--PKLDE 236 (301)
T ss_pred eEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C--CCHHH
Confidence 9999999999999999999999999999999999999 9999999999999775 588888877666633 3 2232
Q ss_pred cchHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 199 LKHQQKD---MRLALALGDENAVSMPIAAAANE-AFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 199 ~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
+..+.|| ++.+++.+.+.|+|+|.+.++.. .+....+.|.+..|.+++.+++-...
T Consensus 237 ~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~ 296 (301)
T PRK09599 237 ISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHA 296 (301)
T ss_pred HHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCC
Confidence 3345565 48899999999999999999544 47777788999999999999986543
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.4e-33 Score=237.82 Aligned_cols=249 Identities=19% Similarity=0.252 Sum_probs=205.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh---hcCceEEEccCChHHHHH-----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI---KKCTITIGMLADPAAALS----- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~----- 72 (257)
|||+|||+|.||..|+.+|.++||+|.+|||++++++.+.+.|.....++.++. +.+|+||+|||+......
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998887777887765 468999999999833222
Q ss_pred -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---CeE
Q 025163 73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KAF 124 (257)
Q Consensus 73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~~ 124 (257)
.+..+|++|+++|+++++..++.+ +.++++|+++.+++++++|+.++. .++
T Consensus 81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~ 159 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYL 159 (298)
T ss_pred hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEE
Confidence 455679999999999999999999 589999999999999999999986 589
Q ss_pred EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcccc-
Q 025163 125 FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS--GLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLK- 200 (257)
Q Consensus 125 ~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~--g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~- 200 (257)
|+|+.|+++.+|+++|.+.+..+.++.|++.++++. |+|++++.++++.+. ..|++++...+.+...++.+.|...
T Consensus 160 ~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~ 239 (298)
T TIGR00872 160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRV 239 (298)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999999999999999999999998 579999999999876 5888888765555554443444332
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163 201 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253 (257)
Q Consensus 201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~ 253 (257)
...+|.+.++..+.+.|+|+|.+.+. ++.+..... .+.--..++...|+.
T Consensus 240 ~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~~ 289 (298)
T TIGR00872 240 SDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRKE 289 (298)
T ss_pred HhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHHh
Confidence 35667799999999999999999984 444443332 222234566666653
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-33 Score=245.06 Aligned_cols=225 Identities=24% Similarity=0.345 Sum_probs=188.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhh---cCceEEEccCChHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL 71 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~~dvii~~v~~~~~~~ 71 (257)
++|||||+|.||.+||.+|+++||+|++|||++++.+++.+. | +..+.+++|+++ ++|+||+|||++..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999999998764 5 346789999986 4899999999887766
Q ss_pred H-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhc
Q 025163 72 S-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG 120 (257)
Q Consensus 72 ~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 120 (257)
. .+..+|++|+++|++|++..++.|+ ++|+||+++++++++|+|+.++
T Consensus 82 ~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 82 ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHh
Confidence 5 6667899999999999999999999 7999999999999999999999
Q ss_pred CC------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hcCCCchhhhccCCcccC
Q 025163 121 KK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQ 190 (257)
Q Consensus 121 ~~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~ 190 (257)
.+ ++|+|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++. .+...|++++....-+..
T Consensus 161 ~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~ 240 (470)
T PTZ00142 161 AKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240 (470)
T ss_pred hhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhc
Confidence 88 799999999999999999999999999999999998 79999999988874 667788888765444444
Q ss_pred CCCCC-CcccchH-----HH-HHHHHHHHHhhcCCCchHHHHH
Q 025163 191 SNYAP-AFPLKHQ-----QK-DMRLALALGDENAVSMPIAAAA 226 (257)
Q Consensus 191 ~~~~~-~~~~~~~-----~k-d~~~~~~~a~~~g~~~p~~~~~ 226 (257)
+|-.. +.-++.. .| .-+...+.+-+.|+|.|++..+
T Consensus 241 ~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a 283 (470)
T PTZ00142 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS 283 (470)
T ss_pred ccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence 43221 1111111 11 1266788888999999987663
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=8.7e-32 Score=239.01 Aligned_cols=223 Identities=21% Similarity=0.311 Sum_probs=187.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---cCceEEEccCChHHHHH-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALS- 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~- 72 (257)
+|||||+|.||.+||.+|+++||+|++|||++++.+++.+. ++..+.+++++++ ++|+||+|||++..++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 58999999999999999999999999999999999999876 2556778888774 68999999999766555
Q ss_pred ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163 73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK 122 (257)
Q Consensus 73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 122 (257)
.+..+|++|+++|++|++..++.|+ .+|+||+++.+++++|+|+.++.+
T Consensus 81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5566899999999999999999998 799999999999999999999987
Q ss_pred ------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccCCcccCCC
Q 025163 123 ------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSN 192 (257)
Q Consensus 123 ------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~ 192 (257)
++|+|+.|+++.+|+++|.+.+.+++++.|++.+++ +.|++++.+.+++ +.+...|++++...+.+..+|
T Consensus 160 ~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d 239 (467)
T TIGR00873 160 VDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239 (467)
T ss_pred cCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccC
Confidence 479999999999999999999999999999999986 7999999999888 567788888887766666555
Q ss_pred CCCCcccchH------HHHHHHHHHHHhhcCCCchHHHH
Q 025163 193 YAPAFPLKHQ------QKDMRLALALGDENAVSMPIAAA 225 (257)
Q Consensus 193 ~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~ 225 (257)
-....-++.. .-.-+...+.+-+.|+|.|.+..
T Consensus 240 ~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~ 278 (467)
T TIGR00873 240 EDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE 278 (467)
T ss_pred CCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence 3311111111 11226678888899999998765
No 16
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.98 E-value=1.2e-30 Score=230.82 Aligned_cols=222 Identities=17% Similarity=0.156 Sum_probs=187.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvi 60 (257)
|||+|||+|+||..+|..|+++||+|++||+++++++.+++ .| ++.++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 89999999999999999999999999999999999988764 23 45667888889999999
Q ss_pred EEccCChHH---------HHH-------------------------------HHHhc--CCc-EEeccccCCccccccCc
Q 025163 61 IGMLADPAA---------ALS-------------------------------AITSK--GGH-FLEAPVSGSKQPAETGQ 97 (257)
Q Consensus 61 i~~v~~~~~---------~~~-------------------------------~~~~~--g~~-~~~~pv~~~~~~~~~~~ 97 (257)
|+|||++.. +.. .+..+ |.. +.+.|+.++|..+..|.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~ 160 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGN 160 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCC
Confidence 999998742 221 11122 332 45667777777777777
Q ss_pred E--------EEEecCChhhHHHHHHHHHHhc-CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 025163 98 L--------VILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLL 168 (257)
Q Consensus 98 ~--------~~~~~g~~~~~~~~~~~l~~~~-~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~ 168 (257)
. .+++|++++..++++++|+.++ ..++++++++.++..|++.|++.+..+++++|+..+|++.|+|++++.
T Consensus 161 ~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~ 240 (411)
T TIGR03026 161 AVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVI 240 (411)
T ss_pred hhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5 6888899999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCchhhhccCCcccCCCCCCC--cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 169 DVLDLGGIANPMFKGKGPTMLQSNYAPA--FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 169 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
++++.+ +++...++.|+ +...++.||+.++.+.+++.|+++|+++++.++-+..
T Consensus 241 ~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 241 EAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 998864 34445566775 4678899999999999999999999999988877654
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=2.1e-30 Score=229.33 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhc---CceEEEccCChHHHHH----------
Q 025163 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALS---------- 72 (257)
Q Consensus 11 mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~---------- 72 (257)
||..||.+|+++||+|++|||++++.+++.+. |+..+.|++|+++. +|+||+|||++..++.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999874 58889999999874 8999999999988776
Q ss_pred ---------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCe-------E
Q 025163 73 ---------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA-------F 124 (257)
Q Consensus 73 ---------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~-------~ 124 (257)
.+..+|++|+++||+|++..++.|. .+|+||+++.+++++|+|+.++.++ .
T Consensus 81 ~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~ 159 (459)
T PRK09287 81 KGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVT 159 (459)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCcee
Confidence 6667899999999999999999998 8999999999999999999999886 8
Q ss_pred EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccCCcccCCCCCCCcccc
Q 025163 125 FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSNYAPAFPLK 200 (257)
Q Consensus 125 ~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 200 (257)
|+|+.|+++.+|+++|.+.+.+++++.|++.+++ +.|++++.+.+++ +.+...|++++...+.+..+|+..+..+-
T Consensus 160 ~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~ 239 (459)
T PRK09287 160 YIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLV 239 (459)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcch
Confidence 9999999999999999999999999999999999 5899999998888 46778899999888888888874333221
Q ss_pred hHHHH-------HHHHHHHHhhcCCCchHHHH
Q 025163 201 HQQKD-------MRLALALGDENAVSMPIAAA 225 (257)
Q Consensus 201 ~~~kd-------~~~~~~~a~~~g~~~p~~~~ 225 (257)
....| -+...+.+-+.|+|.|++..
T Consensus 240 d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 240 DVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred HHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 11122 26778888899999998755
No 18
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1.9e-30 Score=223.28 Aligned_cols=244 Identities=16% Similarity=0.196 Sum_probs=200.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------C------CcccCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+|.||+++|.+|+++||+|++|+|++++.+.+++. | +..++++.++++++|+||+|+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 799999999999999999999999999999999988888764 3 34566888888999999999999
Q ss_pred hHHHHH-----------------------------HHHh---cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHH
Q 025163 67 PAAALS-----------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAIS 114 (257)
Q Consensus 67 ~~~~~~-----------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 114 (257)
....+. .+.. .++.++.+|..........+++.++.+++++.++++++
T Consensus 85 ~~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 164 (328)
T PRK14618 85 KALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQA 164 (328)
T ss_pred HHHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Confidence 865443 1112 34455666655444444556778889999999999999
Q ss_pred HHHHhcCCeEE--------eCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----
Q 025163 115 ALNVIGKKAFF--------LGE---------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL---- 173 (257)
Q Consensus 115 ~l~~~~~~~~~--------~g~---------~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~---- 173 (257)
+|+..+.+++. .+. .|.+..+|+.+|.....+..++.|+..++++.|+++++++++++.
T Consensus 165 ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~ 244 (328)
T PRK14618 165 AFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLI 244 (328)
T ss_pred HhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhhee
Confidence 99999988763 332 477788999999999999999999999999999999999999886
Q ss_pred cCCCchhhhccC--CcccCC---C-CCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 025163 174 GGIANPMFKGKG--PTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 247 (257)
Q Consensus 174 ~~~~s~~~~~~~--~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~ 247 (257)
.++.|+.++++. .++..+ + +.+.|.+.++.||++.+.+++++.++++|+++.+++++ +++.|..+++
T Consensus 245 ~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~~~~ 317 (328)
T PRK14618 245 ATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPLAGL 317 (328)
T ss_pred eEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHH
Confidence 367888888873 477776 4 66788899999999999999999999999999999888 3566777766
Q ss_pred HHHH
Q 025163 248 EVVK 251 (257)
Q Consensus 248 ~~~~ 251 (257)
+.+-
T Consensus 318 ~~~~ 321 (328)
T PRK14618 318 RSLM 321 (328)
T ss_pred HHHh
Confidence 6654
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.7e-29 Score=196.03 Aligned_cols=246 Identities=24% Similarity=0.346 Sum_probs=194.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh---cCceEEEccCChHHHHH-----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALS----- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~----- 72 (257)
|+|++||+|.||..+..+|.+.||+|++||+|++.++++...|++.++|+.+.++ ...+|.++||..+....
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988764 57899999998855544
Q ss_pred --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---Ce
Q 025163 73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KA 123 (257)
Q Consensus 73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~ 123 (257)
.+..+|++|+|+..+++.-.++.|. ++|+|||.+++++++|+|+.+.. -.
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gy 159 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGY 159 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCcc
Confidence 5778999999999999999999997 59999999999999999999986 46
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcccc
Q 025163 124 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLK 200 (257)
Q Consensus 124 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ 200 (257)
.|+|+.|+++.+||++|-+.+.++++++|.+.+++.+. +|.+.+.++++.++ ..||.++-. ...++.+..-. .+.
T Consensus 160 l~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt-~~Af~~d~~L~-q~~ 237 (300)
T COG1023 160 LYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLT-AEAFKKDPDLD-QIS 237 (300)
T ss_pred ccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHH-HHHHhhCCCHH-Hhc
Confidence 79999999999999999999999999999999999865 66788999999875 456665432 11111111000 000
Q ss_pred hHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHH-HHHHHHhh
Q 025163 201 HQQKD---MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSA-VFEVVKDL 253 (257)
Q Consensus 201 ~~~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~-l~~~~~~~ 253 (257)
....| -+.-++.+-+.|+|.|++.. .++.+..+++ +..|+. ++..+|.+
T Consensus 238 g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~--~d~f~~kvlaalR~~ 290 (300)
T COG1023 238 GRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQ--DDTFAGKVLAALRNE 290 (300)
T ss_pred CeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccc--hhhHHHHHHHHHHHH
Confidence 00001 13457788889999999877 4566666643 344653 55556543
No 20
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.95 E-value=3.9e-27 Score=202.68 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=183.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+|.||..++..|+++||+|++|+|++++++.+++. ++....+++++++++|+||+|||+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 699999999999999999999999999999999999988875 345567888888999999999998
Q ss_pred hHHHHH-------------------------------HHHhc-----CCcEEeccccCCccccccCcEEEEecCChhhHH
Q 025163 67 PAAALS-------------------------------AITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEKALYD 110 (257)
Q Consensus 67 ~~~~~~-------------------------------~~~~~-----g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~ 110 (257)
...... .+... ...++.+|............+.++.+++.+.++
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~ 161 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAE 161 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHH
Confidence 644332 11111 222344444433323444455667778899999
Q ss_pred HHHHHHHHhcCCeEEeCCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163 111 EAISALNVIGKKAFFLGEV-----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173 (257)
Q Consensus 111 ~~~~~l~~~~~~~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~ 173 (257)
+++++|+..+.++.+..++ |.+..+|+.+|.+...+..++.|++.++++.|+|++.+.++...
T Consensus 162 ~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~ 241 (325)
T PRK00094 162 RVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGL 241 (325)
T ss_pred HHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHh
Confidence 9999999988877666553 45555788899999999999999999999999999999887665
Q ss_pred c----CCCchhhhccC--CcccCCC-C-----CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q 025163 174 G----GIANPMFKGKG--PTMLQSN-Y-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN 241 (257)
Q Consensus 174 ~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 241 (257)
+ +..++..+++. ..+..+. + ..+ ...++.||++.+++.++++|+++|+.+++++++ .++.
T Consensus 242 ~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~ 313 (325)
T PRK00094 242 GDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGK 313 (325)
T ss_pred hhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCC
Confidence 4 34455555543 2333222 1 112 567789999999999999999999999999987 4667
Q ss_pred cHHHHHHHHH
Q 025163 242 DFSAVFEVVK 251 (257)
Q Consensus 242 d~~~l~~~~~ 251 (257)
+...+++.+-
T Consensus 314 ~~~~~~~~~~ 323 (325)
T PRK00094 314 DPREAVEDLM 323 (325)
T ss_pred CHHHHHHHHh
Confidence 7777776653
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=4e-26 Score=194.66 Aligned_cols=236 Identities=15% Similarity=0.146 Sum_probs=191.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCCC-------------cccCCHHHHhhc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHGA-------------TVGGSPAEVIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g~-------------~~~~~~~~~~~~ 56 (257)
|||+|||+|.||..+|..|+++|++|++|||++++++.. .+.|. ..+.++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 689999999999999999999999999999998877653 33442 567789899999
Q ss_pred CceEEEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEec---
Q 025163 57 CTITIGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSA--- 103 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--- 103 (257)
+|+|+.|+|+...... .+...+..+.++|+.++... .++.+++
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~ 158 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPW 158 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCC
Confidence 9999999998754443 11223456777887643211 2456775
Q ss_pred CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhc
Q 025163 104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG 183 (257)
Q Consensus 104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~ 183 (257)
++++.+++++++++.+|+++++++..+.+. +++|. ...+++|++.++++.|++++++.++++.+.+.+|.+
T Consensus 159 t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~-- 229 (308)
T PRK06129 159 TAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF-- 229 (308)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--
Confidence 789999999999999999999998767775 33442 458999999999999999999999999988888777
Q ss_pred cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 025163 184 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 249 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~ 249 (257)
+++.++..++.+++....+.||..+..+++++.+.|.|+++..++.+....+.-.+..++..+.++
T Consensus 230 ~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 230 MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 567777777778888899999999999999999999999998888777787776777777766554
No 22
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.95 E-value=9e-28 Score=186.41 Aligned_cols=128 Identities=35% Similarity=0.677 Sum_probs=116.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------- 72 (257)
|||||||+|.||..||++|.++||+|++|||++++.+++.+.|++.+.|+.|+++++|+||+|||++..++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 689999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE-Ee
Q 025163 73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF-FL 126 (257)
Q Consensus 73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~-~~ 126 (257)
.+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++ ++
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~ 161 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYV 161 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeee
Confidence 5667899999999999999999999999999999999999999999999998 45
Q ss_pred CC
Q 025163 127 GE 128 (257)
Q Consensus 127 g~ 128 (257)
|+
T Consensus 162 G~ 163 (163)
T PF03446_consen 162 GP 163 (163)
T ss_dssp ES
T ss_pred Cc
Confidence 64
No 23
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.95 E-value=7.7e-26 Score=199.58 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=168.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc----------------ccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~~dvii~~v 64 (257)
|||+|||+|+||..+|.+|++ ||+|++||+++++++.++ .|.. .+++..++++++|++|+||
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 899999999999999999887 699999999999999998 4432 3445456788999999999
Q ss_pred CChH---------HHHH--------------------------------HHHh-cCCcEEe--------ccccCCccccc
Q 025163 65 ADPA---------AALS--------------------------------AITS-KGGHFLE--------APVSGSKQPAE 94 (257)
Q Consensus 65 ~~~~---------~~~~--------------------------------~~~~-~g~~~~~--------~pv~~~~~~~~ 94 (257)
|++. .+.. .+.. .|..+.+ .|+..+.....
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 9882 2221 1111 2444433 23333333333
Q ss_pred cCcEE-EEecCChhhHHHHHHHHHHhc-CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 95 TGQLV-ILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 95 ~~~~~-~~~~g~~~~~~~~~~~l~~~~-~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
...+. ++.|++++..+.++++++.+. ..++++++++.|+..|+++|++.++.+++++|++.+|++.|+|.+++.++++
T Consensus 165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG 244 (425)
T ss_pred ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 23332 556667888889999999986 4578899999999999999999999999999999999999999999999966
Q ss_pred hcCCCchhhhccCCcccCCCCCCC-cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 173 LGGIANPMFKGKGPTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 173 ~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
.. +.+ ..+.|| +...|..||...+...+++.|.+++++++++++-+..
T Consensus 245 ~~----~~~---------~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 245 SK----WNF---------LPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred CC----CCc---------ccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 54 211 113455 7888899999999999999999999999988776543
No 24
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.94 E-value=5.5e-25 Score=192.03 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=167.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH----------------CCCcc--cCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~~dvii~ 62 (257)
|||+|||+|.||..+|..|+. ||+|++||+++++++++++ .+.+. ..++.++++++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 899999999999999987774 9999999999999998876 23333 3347788899999999
Q ss_pred ccCCh----------HHHHH----HHH-hcCCcEEe------------------ccccCCccccccCcE--------EEE
Q 025163 63 MLADP----------AAALS----AIT-SKGGHFLE------------------APVSGSKQPAETGQL--------VIL 101 (257)
Q Consensus 63 ~v~~~----------~~~~~----~~~-~~g~~~~~------------------~pv~~~~~~~~~~~~--------~~~ 101 (257)
|||++ ..++. ... ..|..++. ..+...|..+..|+. .++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p~rvv 159 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIV 159 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCCCEEE
Confidence 99987 23222 000 11211111 112224566777877 789
Q ss_pred ecCChhhHHHHHHHHHH--hcCCeE-EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 025163 102 SAGEKALYDEAISALNV--IGKKAF-FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 178 (257)
Q Consensus 102 ~~g~~~~~~~~~~~l~~--~~~~~~-~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s 178 (257)
+|++++..+++.++|.. ++..+. ++++.+.|++.|++.|++.++.+++++|+..+|++.|+|.+++.++++..+..+
T Consensus 160 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~ 239 (388)
T PRK15057 160 IGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIG 239 (388)
T ss_pred EEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCC
Confidence 99988888999999854 454444 688999999999999999999999999999999999999999999998764333
Q ss_pred hhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 179 PMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
+.+ + ..-+||...|..||...+...+ .++++++++++.++-+..
T Consensus 240 ~~~-------l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 240 NHY-------N--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred Ccc-------C--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 221 0 1224688999999999887655 557789998877766554
No 25
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.94 E-value=7.2e-25 Score=193.45 Aligned_cols=219 Identities=12% Similarity=0.067 Sum_probs=164.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHH---------------hhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEV---------------IKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~---------------~~~~dvii~~v 64 (257)
|||+|||+|.||..+|..|+++||+|++||+++++++.++...... ...+++. .+++|+||+||
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999999999999875322211 1111111 24799999999
Q ss_pred CCh---------HHHHH-------------------------------HHHhcC--------------CcEEecc--ccC
Q 025163 65 ADP---------AAALS-------------------------------AITSKG--------------GHFLEAP--VSG 88 (257)
Q Consensus 65 ~~~---------~~~~~-------------------------------~~~~~g--------------~~~~~~p--v~~ 88 (257)
|++ ..++. .+...+ +.++.+| +..
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~ 163 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP 163 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC
Confidence 986 23332 122222 2245566 444
Q ss_pred CccccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025163 89 SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 167 (257)
Q Consensus 89 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~ 167 (257)
+.......+...++|| +++.+++++++++.++..++++++++.++..|+++|++.+..+++++|+..+|++.|+|++++
T Consensus 164 G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v 243 (415)
T PRK11064 164 GQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWEL 243 (415)
T ss_pred CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4444444445577788 999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 168 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 168 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
.+.++..+.... + ..-+|+...+..||..++.+ +.+.+.+++++++++-+..
T Consensus 244 ~~~~~~~~ri~~---------l--~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 244 IRLANRHPRVNI---------L--QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred HHHhccCCCccc---------C--CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 999986643210 1 12246778889999988754 4566788888877665544
No 26
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-25 Score=191.16 Aligned_cols=227 Identities=14% Similarity=0.213 Sum_probs=169.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH---
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT--- 75 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~--- 75 (257)
|||+|||+|.||+++|..|.++||+|++|+|+++ .++.++++++|+||+|+|+...... .+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~ 71 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALN 71 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999853 4788888999999999998643332 121
Q ss_pred -hcCCcEEe-----------------------cccc--CCcccc-----ccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163 76 -SKGGHFLE-----------------------APVS--GSKQPA-----ETGQLVILSAGEKALYDEAISALNVIGKKAF 124 (257)
Q Consensus 76 -~~g~~~~~-----------------------~pv~--~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 124 (257)
..+..+++ .|+. .++..+ ..++..++.+++.+.+++++++|+..+.+++
T Consensus 72 ~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~ 151 (308)
T PRK14619 72 LPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVY 151 (308)
T ss_pred CCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEE
Confidence 11333333 3332 222221 2246678889999999999999999998888
Q ss_pred EeCC-CC--h--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCc
Q 025163 125 FLGE-VG--N--------------GAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT 187 (257)
Q Consensus 125 ~~g~-~g--~--------------a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~ 187 (257)
+.++ .| . +..+|+..|.....+..++.|+..++++.|++++++.++. +.+.++. ..+.
T Consensus 152 ~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~---t~~~ 226 (308)
T PRK14619 152 TNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLA---TCTS 226 (308)
T ss_pred ecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhhe---eecC
Confidence 6666 22 2 2334488899999999999999999999999999998853 3233222 2234
Q ss_pred ccCCCCCCCcccchH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163 188 MLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251 (257)
Q Consensus 188 ~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~ 251 (257)
+.+++|.++|.+..+ .||++.+++++++.|+++|+++++++++. ++.+...+++.+-
T Consensus 227 ~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~~~l~ 299 (308)
T PRK14619 227 PLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQALEELM 299 (308)
T ss_pred CCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHHHHHH
Confidence 555666655555555 89999999999999999999999999984 5566666666654
Q ss_pred h
Q 025163 252 D 252 (257)
Q Consensus 252 ~ 252 (257)
+
T Consensus 300 ~ 300 (308)
T PRK14619 300 E 300 (308)
T ss_pred c
Confidence 3
No 27
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.92 E-value=5e-24 Score=177.90 Aligned_cols=244 Identities=16% Similarity=0.218 Sum_probs=194.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+|+||++||..|+++||+|.+|.|+++..+++++. ++..++|+.++++++|+|+++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 799999999999999999999999999999999999998764 245677999999999999999998
Q ss_pred hHHHHH-----------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHH
Q 025163 67 PAAALS-----------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDE 111 (257)
Q Consensus 67 ~~~~~~-----------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (257)
....+. .+....+.++++|.++........+..++.+.|.+..++
T Consensus 82 ~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~ 161 (329)
T COG0240 82 QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEK 161 (329)
T ss_pred HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHH
Confidence 766555 111123678889999888888888888888999999999
Q ss_pred HHHHHHHhcCCeEEeCC-C----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025163 112 AISALNVIGKKAFFLGE-V----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 174 (257)
Q Consensus 112 ~~~~l~~~~~~~~~~g~-~----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~ 174 (257)
++.+|+.-.+++|...+ + |....+.+..|+-.+++..+++|+..+....|-++++++.+-+.+
T Consensus 162 v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlG 241 (329)
T COG0240 162 VQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLG 241 (329)
T ss_pred HHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccccc
Confidence 99999986666665554 2 334445666899999999999999999999999999998877755
Q ss_pred ----CCCchhhhcc-CCcccCCCCCCC------cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163 175 ----GIANPMFKGK-GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF 243 (257)
Q Consensus 175 ----~~~s~~~~~~-~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~ 243 (257)
++.|+.++|+ +..++.+..+.. ..+-+..+..+.+.+.++++++++|+++++++++. ++.+.
T Consensus 242 DLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~~~ 314 (329)
T COG0240 242 DLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGLDP 314 (329)
T ss_pred ceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCCCH
Confidence 6778777765 334443333221 23445677889999999999999999999999986 45566
Q ss_pred HHHHHHHH
Q 025163 244 SAVFEVVK 251 (257)
Q Consensus 244 ~~l~~~~~ 251 (257)
...++.+-
T Consensus 315 ~~~~~~L~ 322 (329)
T COG0240 315 KEAIEELM 322 (329)
T ss_pred HHHHHHHh
Confidence 66666553
No 28
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=6.5e-24 Score=178.13 Aligned_cols=224 Identities=23% Similarity=0.364 Sum_probs=178.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHh---hcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~ 72 (257)
+.||+||+|.||+.||.++.++|+.|.+|||++++.+++.+. .+..+.|++|.+ +....|+++|+....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 369999999999999999999999999999999999998764 356777888865 568889999987653333
Q ss_pred -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163 73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 121 (257)
Q Consensus 73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 121 (257)
.+..+|+.|+.+.|+|+...+..|+ ++|+||++++++.++++|..+..
T Consensus 84 ~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaA 162 (473)
T COG0362 84 VIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAA 162 (473)
T ss_pred HHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHh
Confidence 6677899999999999999999999 69999999999999999999885
Q ss_pred C------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCC
Q 025163 122 K------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQS 191 (257)
Q Consensus 122 ~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~ 191 (257)
+ +.|+|+-|+++.+|+++|-+.+.-+++++|+..+++. .|++.+.+.++.. .+...|.+.+....-+...
T Consensus 163 k~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~k 242 (473)
T COG0362 163 KVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKK 242 (473)
T ss_pred hcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhc
Confidence 5 5689999999999999999999999999999999998 8999877766654 4445555444332223334
Q ss_pred CCCCCcccchHHHHH-------HHHHHHHhhcCCCchHHHH
Q 025163 192 NYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 225 (257)
Q Consensus 192 ~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~ 225 (257)
|...+-++-...-|. +.....+-+.|+|+|+...
T Consensus 243 D~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~e 283 (473)
T COG0362 243 DEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITE 283 (473)
T ss_pred CcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHH
Confidence 444332332222232 6677888899999988654
No 29
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.91 E-value=4.9e-23 Score=178.38 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=167.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----------------cCCHHHHhhcCceEEEc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~~dvii~~ 63 (257)
|||+|||+|.||..+|..|+++||+|++|+|++ +.+.+++.|... ..++ +.+.++|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 789999999999999999999999999999965 456676665432 2344 566799999999
Q ss_pred cCChHHHHH-------------------------HHHhc--CCcEEecc-----ccCCccc---cccCcEEEEecCChhh
Q 025163 64 LADPAAALS-------------------------AITSK--GGHFLEAP-----VSGSKQP---AETGQLVILSAGEKAL 108 (257)
Q Consensus 64 v~~~~~~~~-------------------------~~~~~--g~~~~~~p-----v~~~~~~---~~~~~~~~~~~g~~~~ 108 (257)
||++...+. .+... ...++.++ +..++.. ...+++.+ ++.+.
T Consensus 81 vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~---~~~~~ 157 (341)
T PRK08229 81 VKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI---EASPA 157 (341)
T ss_pred ecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe---cCCch
Confidence 998866554 11110 11222221 1111111 11233222 23455
Q ss_pred HHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHHH
Q 025163 109 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM--------------------MNTFSEGLVLAEKSGLDPRTLL 168 (257)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~--------------------~~~~~E~~~l~~~~g~~~~~~~ 168 (257)
++++.++|+..+.++++.++++...|.|++.|.+.... ..++.|++.++++.|++++.+.
T Consensus 158 ~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~ 237 (341)
T PRK08229 158 LRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLT 237 (341)
T ss_pred HHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 78899999999999999999999999999999743333 3789999999999999987654
Q ss_pred HHHhhc-----CCCchhhhccCCcccCCCCCCCcccchHHHHHH------------HHHHHHhhcCCCchHHHHHHHHHH
Q 025163 169 DVLDLG-----GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR------------LALALGDENAVSMPIAAAANEAFK 231 (257)
Q Consensus 169 ~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~g~~~p~~~~~~~~~~ 231 (257)
++...+ ...++.+......+...++.. ...|++|+. .+++.++++|+++|+.+.++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~~~~~ 314 (341)
T PRK08229 238 PLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLCALVH 314 (341)
T ss_pred CCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 433322 123344443333444444332 466999997 799999999999999999999999
Q ss_pred HHHHcCCC-CCcHHHHHHHHH
Q 025163 232 KARSLGLG-DNDFSAVFEVVK 251 (257)
Q Consensus 232 ~~~~~g~~-~~d~~~l~~~~~ 251 (257)
...+.|.. -..-.+++.-+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ 335 (341)
T PRK08229 315 EAERAGARPAWSGEALLAELR 335 (341)
T ss_pred HHHhCCCcCCCChHHHHHHhh
Confidence 99887653 333334555444
No 30
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.3e-22 Score=171.65 Aligned_cols=223 Identities=16% Similarity=0.138 Sum_probs=169.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvi 60 (257)
|||+|||+|++|...+..|++.||+|+.+|.+++|++.+++. | .+.++|..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 999999999999999999999999999999999999888652 1 45678999999999999
Q ss_pred EEccCChHHHHH----------------------------------------HHHh----cCCcEEeccccCCccccccC
Q 025163 61 IGMLADPAAALS----------------------------------------AITS----KGGHFLEAPVSGSKQPAETG 96 (257)
Q Consensus 61 i~~v~~~~~~~~----------------------------------------~~~~----~g~~~~~~pv~~~~~~~~~~ 96 (257)
|+|||++..... .+.. +.+..+..|.|-..-.+-..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D 160 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYD 160 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhh
Confidence 999987755321 1111 12334445543222222111
Q ss_pred cE---EEEecCChh-hHHHHHHHHHHh---cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163 97 QL---VILSAGEKA-LYDEAISALNVI---GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 169 (257)
Q Consensus 97 ~~---~~~~~g~~~-~~~~~~~~l~~~---~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~ 169 (257)
.+ .+++|.+.+ +.+.+++++..+ ..+ +.+-++..+++.|++.|++.++-+.+++|...+|++.|+|.+.+.+
T Consensus 161 ~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p-~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~ 239 (414)
T COG1004 161 FLYPDRIVIGVRSERAAAVLRELYAPFLRQDVP-ILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAE 239 (414)
T ss_pred ccCCCeEEEccCChhHHHHHHHHHhhhhhcCCC-EEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 11 266676544 577888888775 444 4455569999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 170 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 170 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
.++...-..+.+- ....||..+|+.||.+.++..++++|.+.++++++.+.-+..
T Consensus 240 gIGlD~RIG~~fl---------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~q 294 (414)
T COG1004 240 GIGLDPRIGNHFL---------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERR 294 (414)
T ss_pred HcCCCchhhHhhC---------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9886533222221 112378899999999999999999999999999988776654
No 31
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.89 E-value=1.9e-22 Score=148.98 Aligned_cols=121 Identities=41% Similarity=0.748 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCc-ccCCCCCCCcccchHHHHHHH
Q 025163 130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRL 208 (257)
Q Consensus 130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 208 (257)
|.+..+|+++|++...++.++.|++.++++.|+|++.+.++++.+++.|++++++.++ +..++|.++|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6889999999999999999999999999999999999999999999999999999884 899999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 025163 209 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 250 (257)
Q Consensus 209 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~ 250 (257)
+.+.+++.|+|+|+.+.+.+.++.+.++|++++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.87 E-value=1e-20 Score=170.76 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=135.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvi 60 (257)
|||+|||+|.||..+|.+|+++|++|++||+++++.+.+.+ .| +..++++.++++++|+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999998776532 13 56778999999999999
Q ss_pred EEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCC---hh
Q 025163 61 IGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGE---KA 107 (257)
Q Consensus 61 i~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~---~~ 107 (257)
|.|+|+....+. .+...+..++++|+... ..++++.+++|+ ++
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e 160 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPE 160 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHH
Confidence 999999875544 11123455666776522 234677888876 79
Q ss_pred hHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCchh
Q 025163 108 LYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT-FSEGLVLAEKSGLDPRTLLDVLDLGGIANPM 180 (257)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~-~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~ 180 (257)
.+++++++++.+|.++++++ |.+.|++.+-+..+ +.|++.++++.|++++++.++++.+.+.+|.
T Consensus 161 ~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 161 TIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 99999999999999998887 46666677766766 5999999999999999999999988777655
No 33
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.87 E-value=7.1e-20 Score=163.17 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=164.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCC-------------------CcccCCHHHHhhcCce
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI 59 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~~dv 59 (257)
|||+|||+|++|..+|..|+++| ++|+++|+++++++.+++.+ ...+++..++++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 89999999999999999999985 78999999999999876431 3355677888999999
Q ss_pred EEEccCChHH--------------HHH-------------------------------HHHh--cC--CcEEeccccCCc
Q 025163 60 TIGMLADPAA--------------ALS-------------------------------AITS--KG--GHFLEAPVSGSK 90 (257)
Q Consensus 60 ii~~v~~~~~--------------~~~-------------------------------~~~~--~g--~~~~~~pv~~~~ 90 (257)
+|+|||++.. ++. .+.. .| +.+..+|.+-.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~ 161 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAE 161 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCC
Confidence 9999986642 111 1121 12 334456644332
Q ss_pred cccccC---cEEEEecCC-----hhhHHHHHHHHHHhcC-CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025163 91 QPAETG---QLVILSAGE-----KALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 161 (257)
Q Consensus 91 ~~~~~~---~~~~~~~g~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g 161 (257)
-.+... .-.+++|+. +++.++++++++.+.. .++.+.++..|++.|++.|.+.++.+++++|...+|++.|
T Consensus 162 G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~g 241 (473)
T PLN02353 162 GTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (473)
T ss_pred CCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222221 112555663 2357888999998863 4566777899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 025163 162 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFK 231 (257)
Q Consensus 162 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~ 231 (257)
+|..++.++++..+..++.+ + ..-+|+...++.||...+...+++.|.+ .++++++.++-+
T Consensus 242 iD~~eV~~~~~~d~rig~~~-------l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~ 304 (473)
T PLN02353 242 ADVSQVSHAVGKDSRIGPKF-------L--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND 304 (473)
T ss_pred CCHHHHHHHhCCCCcCCCCC-------C--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 99999999988764321111 1 1224678889999999999999999988 778776664433
No 34
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.86 E-value=2.9e-20 Score=155.65 Aligned_cols=219 Identities=17% Similarity=0.267 Sum_probs=152.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--- 72 (257)
|||+|||+|.||.+|+++|.++|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|||+....+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~ 80 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE 80 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence 899999999999999999999998 89999 9999999999888998888999999999999999986543333
Q ss_pred ---------------------HHH-hcCC-cEEe-ccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163 73 ---------------------AIT-SKGG-HFLE-APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 128 (257)
Q Consensus 73 ---------------------~~~-~~g~-~~~~-~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~ 128 (257)
.+. ..+. .++. +|............+....+++++.++.++++|+.+|. ++++++
T Consensus 81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e 159 (266)
T PLN02688 81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDE 159 (266)
T ss_pred HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 111 1111 2332 44332222221111111223378889999999999998 888754
Q ss_pred ---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhh-cc--CC-cccCCCCCC
Q 025163 129 ---------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFK-GK--GP-TMLQSNYAP 195 (257)
Q Consensus 129 ---------~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~-~~--~~-~~~~~~~~~ 195 (257)
.|++.. +.+.++.++.|+ +.+.|++++...+++..+...++.+- .. .+ .+...-.+|
T Consensus 160 ~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 160 KLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred HHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCC
Confidence 344333 456667788887 88899999999999887644444321 10 01 111111122
Q ss_pred CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163 196 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 237 (257)
Q Consensus 196 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 237 (257)
+ .-....++..++.|++-.+.+++...++++.+.+
T Consensus 230 g-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 230 G-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred c-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 1 2235678888889999999999999999987754
No 35
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=8.3e-20 Score=157.74 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=172.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC---------------CcccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~~dvii~~v~ 65 (257)
|||+|||+|.||+++|..|+++| +|++|.|++++.+.+++.+ +...+++.++++++|+||+|||
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 79999999999999999999999 6888999999998887642 1245577788899999999999
Q ss_pred ChHHHHH-------------------------------HHHh----cCCcEEeccccCCccccccCcEEEEecCChhhHH
Q 025163 66 DPAAALS-------------------------------AITS----KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD 110 (257)
Q Consensus 66 ~~~~~~~-------------------------------~~~~----~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~ 110 (257)
+....+. .+.. .....+.+|.+............++.+.+++..+
T Consensus 87 s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~ 166 (341)
T PRK12439 87 SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLAT 166 (341)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHH
Confidence 7765444 1111 0112333443322222223334455666778888
Q ss_pred HHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163 111 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM-----------------GCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173 (257)
Q Consensus 111 ~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~-----------------~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~ 173 (257)
.++++|+.-+.+++...++-..+|.|..-|.+. ..+..++.|+..++++.|.++++++.+.+.
T Consensus 167 ~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 999999988888877777777777776665443 455789999999999999999999987775
Q ss_pred c----CCCchhhhcc--CCcccCCCCCCC------cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q 025163 174 G----GIANPMFKGK--GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN 241 (257)
Q Consensus 174 ~----~~~s~~~~~~--~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 241 (257)
+ ++.|..++|+ +..+.++ .+.. ..+.+.....+.+.+.++++++++|+++.+++++. ++.
T Consensus 247 GDl~~Tc~s~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~-------~~~ 318 (341)
T PRK12439 247 GDLIVTCTSQRSRNRHVGEQLGAG-KPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN-------HGS 318 (341)
T ss_pred hhhhhhccCCCCccHHHHHHHHCC-CCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCC
Confidence 5 5666656654 2333332 2111 01344567789999999999999999999999984 566
Q ss_pred cHHHHHHHHH
Q 025163 242 DFSAVFEVVK 251 (257)
Q Consensus 242 d~~~l~~~~~ 251 (257)
+...+++.+-
T Consensus 319 ~~~~~~~~l~ 328 (341)
T PRK12439 319 TVEQAYRGLI 328 (341)
T ss_pred CHHHHHHHHh
Confidence 6776666653
No 36
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.3e-20 Score=153.78 Aligned_cols=223 Identities=25% Similarity=0.365 Sum_probs=173.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC---C--CcccCCHHHHh---hcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~ 72 (257)
+.||.||++.||..|+.+..++||.|.+|||+.++++++.++ | +....|++|.+ +...+|++.|+....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 469999999999999999999999999999999999988654 2 44577999876 568899999988777666
Q ss_pred -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163 73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 121 (257)
Q Consensus 73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 121 (257)
.+..+|+-|+.+.++|+...++.|+ ++|+||+++++..++++|+.+..
T Consensus 87 ~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaa 165 (487)
T KOG2653|consen 87 FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAA 165 (487)
T ss_pred HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999 69999999999999999998865
Q ss_pred C-------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCCchhhhccCCcccC
Q 025163 122 K-------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDL---GGIANPMFKGKGPTMLQ 190 (257)
Q Consensus 122 ~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~ 190 (257)
+ +.++|+-|+++.+||++|-+.+.-++++.|+..+.++ .|++.+++.++... +..-|...+.. ..++.
T Consensus 166 kv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT-~dIlk 244 (487)
T KOG2653|consen 166 KVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEIT-ADILK 244 (487)
T ss_pred HhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHh-HHHhh
Confidence 4 4789999999999999999999999999999999999 88988877776653 33333333321 12221
Q ss_pred CCCCCCcccchHHHHH-------HHHHHHHhhcCCCchHHHH
Q 025163 191 SNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 225 (257)
Q Consensus 191 ~~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~ 225 (257)
-+-..+..+-.-..|. +.....+-+.|+|.|+...
T Consensus 245 ~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~e 286 (487)
T KOG2653|consen 245 FKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGE 286 (487)
T ss_pred eeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHH
Confidence 1111111111111122 5667778888999888644
No 37
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.84 E-value=1.4e-19 Score=156.21 Aligned_cols=242 Identities=12% Similarity=0.044 Sum_probs=174.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI 54 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~ 54 (257)
|||+|||+|+||+++|..|+++| |+|.+|.|+++ ..+.+++. ++..++|+.+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 69999999999999999999997 89999999886 36666653 234567888999
Q ss_pred hcCceEEEccCChHHHHH--HHH------------------------------------hcCCcEEeccccCCccccccC
Q 025163 55 KKCTITIGMLADPAAALS--AIT------------------------------------SKGGHFLEAPVSGSKQPAETG 96 (257)
Q Consensus 55 ~~~dvii~~v~~~~~~~~--~~~------------------------------------~~g~~~~~~pv~~~~~~~~~~ 96 (257)
+++|+|+++||+....+. .+. ...+.++.+|.++........
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~~p 171 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVAREEF 171 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcCCC
Confidence 999999999998766544 110 112334556666666666666
Q ss_pred cEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-CC----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163 97 QLVILSAGEKALYDEAISALNVIGKKAFFLGE-VG----------------NGAKMKLVVNMIMGCMMNTFSEGLVLAEK 159 (257)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~g----------------~a~~~kl~~n~~~~~~~~~~~E~~~l~~~ 159 (257)
+..++.+.|.+..+.++++|+.-..+++...+ +| ....+++..|+..+++..++.|+..++++
T Consensus 172 t~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a 251 (365)
T PTZ00345 172 SEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKI 251 (365)
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 77778888899889999999866666665554 32 22334455889999999999999999999
Q ss_pred cC--CCHHHHHHHHhhc----CCCchhhhcc--CCcccCCC--CCCC--------cccchHHHHHHHHHHHHhhcCC--C
Q 025163 160 SG--LDPRTLLDVLDLG----GIANPMFKGK--GPTMLQSN--YAPA--------FPLKHQQKDMRLALALGDENAV--S 219 (257)
Q Consensus 160 ~g--~~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~~~--------~~~~~~~kd~~~~~~~a~~~g~--~ 219 (257)
.| .++++++.+.+.+ ++.| ++|+ +..+.++. .+.. -.+.+.....+.+.++++++++ +
T Consensus 252 ~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~~ 329 (365)
T PTZ00345 252 FFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKE 329 (365)
T ss_pred hCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCCCC
Confidence 97 4899998877755 4555 4443 33444321 1100 1233456677899999999999 8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163 220 MPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251 (257)
Q Consensus 220 ~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~ 251 (257)
+|+++++++++. ++.+...+++.+.
T Consensus 330 ~Pi~~~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 330 FPLFTVTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred CCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 999999999984 4555556555554
No 38
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=6.2e-19 Score=151.77 Aligned_cols=241 Identities=16% Similarity=0.198 Sum_probs=156.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHh-hcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVI-KKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~-~~~dvii~~v~ 65 (257)
|||+|||+|.||++++..|.++|++|++|+|++++++.+++.+ ++..+++.+.+ .++|+||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 8999999999999999999999999999999999888887631 12345666665 58899999999
Q ss_pred ChHHHHH--HHHh----cCCcEEe-----------------------ccc--cCCccc-----cccCcEEEEecCChhhH
Q 025163 66 DPAAALS--AITS----KGGHFLE-----------------------APV--SGSKQP-----AETGQLVILSAGEKALY 109 (257)
Q Consensus 66 ~~~~~~~--~~~~----~g~~~~~-----------------------~pv--~~~~~~-----~~~~~~~~~~~g~~~~~ 109 (257)
+....+. .+.. .+..++. .|+ ..+|.. ........+.+.+.+..
T Consensus 81 s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~ 160 (326)
T PRK14620 81 TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLG 160 (326)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHH
Confidence 8876654 2221 1111110 011 111111 11112234445556666
Q ss_pred HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCC--CHHHHH--
Q 025163 110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG-----------------CMMNTFSEGLVLAEKSGL--DPRTLL-- 168 (257)
Q Consensus 110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~-----------------~~~~~~~E~~~l~~~~g~--~~~~~~-- 168 (257)
+++.++|+.-+.+++...++....|.|++-|.+.. .+...+.|+..++++.|. +++++.
T Consensus 161 ~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl 240 (326)
T PRK14620 161 SSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGP 240 (326)
T ss_pred HHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcc
Confidence 77788887777777777778888899999887543 236689999999999987 788885
Q ss_pred ----HHHhhcCCCchhhhcc--CCcccCCCC-----CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163 169 ----DVLDLGGIANPMFKGK--GPTMLQSNY-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 237 (257)
Q Consensus 169 ----~~~~~~~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 237 (257)
+++.. +.+...+|+ +..+..+.. ...-+.-.....++.+++.++++|+++|+.+.+++++.
T Consensus 241 ~g~gdl~~t--~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~------ 312 (326)
T PRK14620 241 SCLGDLILT--CTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY------ 312 (326)
T ss_pred chhhhhhhe--ecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh------
Confidence 44421 222222222 111111111 01111223445568999999999999999999998873
Q ss_pred CCCCcHHHHHHHH
Q 025163 238 LGDNDFSAVFEVV 250 (257)
Q Consensus 238 ~~~~d~~~l~~~~ 250 (257)
++.+...+++.+
T Consensus 313 -~~~~~~~~~~~~ 324 (326)
T PRK14620 313 -ENISLEKTISVI 324 (326)
T ss_pred -CCCCHHHHHHHH
Confidence 455555555543
No 39
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.6e-19 Score=152.49 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=132.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvi 60 (257)
++|+|||+|++|.++|..++++|++|+++|.|+.+++.+++- | .+.++++.++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 589999999999999999999999999999999998887652 2 4556677665 499999
Q ss_pred EEccCChHHHHH-----------------------------------------HHHh-cCCcE-Ee-----cc--ccCCc
Q 025163 61 IGMLADPAAALS-----------------------------------------AITS-KGGHF-LE-----AP--VSGSK 90 (257)
Q Consensus 61 i~~v~~~~~~~~-----------------------------------------~~~~-~g~~~-~~-----~p--v~~~~ 90 (257)
++|||++-.... .+.. .|..+ .| +| +..+.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCc
Confidence 999997644311 2222 22222 11 22 11111
Q ss_pred cccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163 91 QPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 169 (257)
Q Consensus 91 ~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~ 169 (257)
.........-++|| ++.+.+.+..+++.+-..++.+.+...|++.|+..|.+...++++.+|...+|++.|++..++.+
T Consensus 169 ~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIe 248 (436)
T COG0677 169 VLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIE 248 (436)
T ss_pred hhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 11111122234444 67778888999999988888888899999999999999999999999999999999999999999
Q ss_pred HHhhcCCC
Q 025163 170 VLDLGGIA 177 (257)
Q Consensus 170 ~~~~~~~~ 177 (257)
+.++....
T Consensus 249 aAnt~P~~ 256 (436)
T COG0677 249 AANTKPRV 256 (436)
T ss_pred HhccCCce
Confidence 99887443
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=2.2e-19 Score=151.23 Aligned_cols=220 Identities=19% Similarity=0.269 Sum_probs=151.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCch-hHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~-~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+|+||.+|+.+|.++| ++|++|+|+++ +++.+... |+....++.++++++|+||+|||++...+.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~ 83 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEALI 83 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHH
Confidence 79999999999999999999998 78999999764 67777664 888888899999999999999998877665
Q ss_pred HHH---hcCCcEEe-----------------ccccCCcc---ccccCcEEEEecCC---hhhHHHHHHHHHHhcCCeE--
Q 025163 73 AIT---SKGGHFLE-----------------APVSGSKQ---PAETGQLVILSAGE---KALYDEAISALNVIGKKAF-- 124 (257)
Q Consensus 73 ~~~---~~g~~~~~-----------------~pv~~~~~---~~~~~~~~~~~~g~---~~~~~~~~~~l~~~~~~~~-- 124 (257)
.+. ..+..+++ .|+.+..+ .+..+.+..+++++ ++.++.++++|+.+|..++
T Consensus 84 ~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 163 (279)
T PRK07679 84 PFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVE 163 (279)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeC
Confidence 111 11222333 23444422 33334455666665 5678899999999997443
Q ss_pred ----E--eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Cchhhh--ccCCcccCCCC-C
Q 025163 125 ----F--LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFK--GKGPTMLQSNY-A 194 (257)
Q Consensus 125 ----~--~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~-~s~~~~--~~~~~~~~~~~-~ 194 (257)
+ ++..|++.. +.+.++.++.|+ +.+.|++++...+++..+.. ...+.. .+.+..+..++ +
T Consensus 164 e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~s 233 (279)
T PRK07679 164 EEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITS 233 (279)
T ss_pred HHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Confidence 2 233333332 233444444444 88999999999999886422 223333 34556666666 6
Q ss_pred CCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163 195 PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 237 (257)
Q Consensus 195 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 237 (257)
|+++. ...++..++.|+.--+.+++...++++.+.+
T Consensus 234 pgg~t-------~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 234 PGGTT-------EAGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred CchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 66654 3356667778888888888888888876654
No 41
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.81 E-value=6.6e-19 Score=151.01 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=166.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCC--------CeEEEEcC-----CchhHHHHHHC--------C------CcccCCHHHHh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI 54 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~ 54 (257)
||+|||+|+||+++|..|+++| |+|++|.| +++..+.+++. | ++..+|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999999 99999998 44555555442 2 23457888999
Q ss_pred hcCceEEEccCChHHHHH-------------------------------------HHHhcCCcEEeccccCCccccccCc
Q 025163 55 KKCTITIGMLADPAAALS-------------------------------------AITSKGGHFLEAPVSGSKQPAETGQ 97 (257)
Q Consensus 55 ~~~dvii~~v~~~~~~~~-------------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~ 97 (257)
+++|+||++||+....+. .+ ...+.++.+|.++........+
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~~~pt 159 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAKEKFS 159 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHcCCCc
Confidence 999999999998877654 11 2345567788877777777777
Q ss_pred EEEEecCC----hhhHHHHHHHHHHhcCCeEEeCC-CC--hHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 025163 98 LVILSAGE----KALYDEAISALNVIGKKAFFLGE-VG--NGAK--------------MKLVVNMIMGCMMNTFSEGLVL 156 (257)
Q Consensus 98 ~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~g~-~g--~a~~--------------~kl~~n~~~~~~~~~~~E~~~l 156 (257)
..++.+.+ .+..+.++++|+.-..+++...+ +| -+.. +++..|+..+++..++.|+..+
T Consensus 160 ~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l 239 (342)
T TIGR03376 160 ETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKF 239 (342)
T ss_pred eEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 77888888 78888999999866666555544 33 2333 3345799999999999999999
Q ss_pred HHHcCCCHH--HHHHHHhhc----CCCchhhhcc--CCcccCCCCCCC--------cccchHHHHHHHHHHHHhhcCCC-
Q 025163 157 AEKSGLDPR--TLLDVLDLG----GIANPMFKGK--GPTMLQSNYAPA--------FPLKHQQKDMRLALALGDENAVS- 219 (257)
Q Consensus 157 ~~~~g~~~~--~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~~--------~~~~~~~kd~~~~~~~a~~~g~~- 219 (257)
+++.|-+++ +++.+.+.+ ++.| .+|+ +..+.++..+.. ..+-+.....+.+.+++++++++
T Consensus 240 ~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~ 317 (342)
T TIGR03376 240 ARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDD 317 (342)
T ss_pred HHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCc
Confidence 999999777 888776654 3444 3433 334443122211 01233455678899999999999
Q ss_pred -chHHHHHHHHHH
Q 025163 220 -MPIAAAANEAFK 231 (257)
Q Consensus 220 -~p~~~~~~~~~~ 231 (257)
+|+++++++++.
T Consensus 318 ~~Pi~~~vy~il~ 330 (342)
T TIGR03376 318 EFPLFEAVYQILY 330 (342)
T ss_pred CCCHHHHHHHHHh
Confidence 999999999985
No 42
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=1.1e-18 Score=147.72 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=121.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------C-----------------CCcccCCHHHHhhc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------H-----------------GATVGGSPAEVIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~~~~~~ 56 (257)
.||+|||+|.||..+|..|+++||+|++||+++++++++.+ . +++.++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 37999999999999999999999999999999998877643 1 13456788889999
Q ss_pred CceEEEccCChHHHHH--------------------------HHH---h-----cCCcEEeccccCCccccccCcEEEEe
Q 025163 57 CTITIGMLADPAAALS--------------------------AIT---S-----KGGHFLEAPVSGSKQPAETGQLVILS 102 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~--------------------------~~~---~-----~g~~~~~~pv~~~~~~~~~~~~~~~~ 102 (257)
+|+||.|+|++...+. .+. . .|.+|+ +|+.+ ++++.++
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~-------~~Lve~v 153 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHK-------MKLVELI 153 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCccc-------CceEEEe
Confidence 9999999999876544 000 0 133333 33322 3577888
Q ss_pred cC---ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 103 AG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 103 ~g---~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
+| +++.+++++++++.++++++++++ ..+.... .+....++|++.+.++.-.+++++..++..+.+.
T Consensus 154 ~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~~n-------Rl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~ 223 (288)
T PRK09260 154 RGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFVTS-------RISALVGNEAFYMLQEGVATAEDIDKAIRLGLNF 223 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHHHH-------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 88 899999999999999999999986 3333322 2334577799998887667899999988765444
No 43
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=9.3e-18 Score=143.58 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=121.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----C--------------CcccCCHHHHhhcCceEE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~~dvii 61 (257)
+||+|||+|.||..+|..|+++|++|++||+++++++.+.+. | +..++++.++++++|+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 479999999999999999999999999999999888776541 2 245667888889999999
Q ss_pred EccCChHHHHH----HHH---hcC----------------------CcEEeccccCCccccccCcEEEEecC---ChhhH
Q 025163 62 GMLADPAAALS----AIT---SKG----------------------GHFLEAPVSGSKQPAETGQLVILSAG---EKALY 109 (257)
Q Consensus 62 ~~v~~~~~~~~----~~~---~~g----------------------~~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~ 109 (257)
+|||....... .+. ..+ ..++....+.++. .+.+..++.+ +++.+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~---~~~l~~i~~g~~t~~~~~ 161 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPAD---VIPLVEVVRGDKTSPQTV 161 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCc---cCceEEEeCCCCCCHHHH
Confidence 99998753322 111 011 1122222222211 1224445554 68899
Q ss_pred HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 025163 110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 178 (257)
Q Consensus 110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s 178 (257)
+.++++++.+|..+++++....+. +++|.+ ...++|++.++++.+++++++.++++.+.++.
T Consensus 162 ~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~ 223 (311)
T PRK06130 162 ATTMALLRSIGKRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGIR 223 (311)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC
Confidence 999999999999888887533333 555553 46799999999999999999999998766553
No 44
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=3.9e-18 Score=153.92 Aligned_cols=156 Identities=22% Similarity=0.358 Sum_probs=123.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..||.+|+.+|++|++||++++++++. .+.| ++.++++++ +.+|
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~a 87 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADC 87 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCC
Confidence 69999999999999999999999999999999988773 4455 466778866 4699
Q ss_pred ceEEEccCChHHHHH--------------------------HHH---h-----cCCcEEe-ccccCCccccccCcEEEEe
Q 025163 58 TITIGMLADPAAALS--------------------------AIT---S-----KGGHFLE-APVSGSKQPAETGQLVILS 102 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~---~-----~g~~~~~-~pv~~~~~~~~~~~~~~~~ 102 (257)
|+||.|||.+..++. .+. . .|++|++ +|++ +++.++
T Consensus 88 DlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~---------~LvEvv 158 (507)
T PRK08268 88 DLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM---------KLVEVV 158 (507)
T ss_pred CEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC---------eeEEEe
Confidence 999999999988776 000 0 1444444 3332 467777
Q ss_pred cC---ChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163 103 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 176 (257)
Q Consensus 103 ~g---~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~ 176 (257)
+| +++.++.+.++++.+++.++++++ .| ++.|-+. ..++.|++.++++.+.+++++.++++.+.+
T Consensus 159 ~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 159 SGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILREAAG 227 (507)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 75 889999999999999999999987 56 3444333 358999999999999999999999986544
No 45
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.79 E-value=2.6e-17 Score=140.47 Aligned_cols=216 Identities=17% Similarity=0.193 Sum_probs=144.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------------cCCHHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvii~~v~~~ 67 (257)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|... .++.+++.+++|+||+|||+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 8999999999999999999999999999999 88888888765421 345566668899999999987
Q ss_pred HHHHH--HHHh---cC----------------------------CcEEeccccCCccccccCcEEEEecC----ChhhHH
Q 025163 68 AAALS--AITS---KG----------------------------GHFLEAPVSGSKQPAETGQLVILSAG----EKALYD 110 (257)
Q Consensus 68 ~~~~~--~~~~---~g----------------------------~~~~~~pv~~~~~~~~~~~~~~~~~g----~~~~~~ 110 (257)
+..+. .+.. .+ +.++.++..++......+.-.+.+|. ..+..+
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~ 159 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTR 159 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHH
Confidence 65544 1110 11 11222222222111111111233332 234566
Q ss_pred HHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--HHH
Q 025163 111 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP--RTL 167 (257)
Q Consensus 111 ~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~~--~~~ 167 (257)
.+.++|...+..+....++....|.|++.|...+. +...+.|+..++++.|+++ +.+
T Consensus 160 ~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~ 239 (305)
T PRK12921 160 AVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVV 239 (305)
T ss_pred HHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHH
Confidence 78888888887777777799999999999976543 3457899999999999763 333
Q ss_pred HHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163 168 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKKAR 234 (257)
Q Consensus 168 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 234 (257)
.+.+..-... +....+.|+.|+ +.+++.++++|+++|..+.+++++....
T Consensus 240 ~~~~~~~~~~-----------------~~~~~sSm~~D~~~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 240 EEIVKIFAGA-----------------PGDMKTSMLRDMEKGRPLEIDHLQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred HHHHHHHhcc-----------------CCCCCcHHHHHHHcCCcccHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 3333210000 000112233333 6799999999999999999999997653
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.79 E-value=4.3e-18 Score=153.28 Aligned_cols=216 Identities=20% Similarity=0.220 Sum_probs=147.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (257)
.||+|||+|.||..||.+|+++||+|++||++++++++. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 479999999999999999999999999999999987653 3334 346778865 469
Q ss_pred CceEEEccCChHHHHH--------------------------HHH--------hcCCcEEe-ccccCCccccccCcEEEE
Q 025163 57 CTITIGMLADPAAALS--------------------------AIT--------SKGGHFLE-APVSGSKQPAETGQLVIL 101 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~--------------------------~~~--------~~g~~~~~-~pv~~~~~~~~~~~~~~~ 101 (257)
||+||.|+|.+..++. .+. ..|++|++ +|++ .++.+
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~---------~LvEv 155 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM---------ALVEV 155 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC---------ceEEE
Confidence 9999999999877766 000 12444444 3333 46788
Q ss_pred ecC---ChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 102 SAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 102 ~~g---~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
++| +++.++.+.++++.+|+.++++++ .|. +.|-+. ..++.|++.++++.+.+++++.++++.+.+.
T Consensus 156 v~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~ 226 (503)
T TIGR02279 156 VSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALRDGAGF 226 (503)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 888 899999999999999999999987 552 333333 4689999999999999999999999875444
Q ss_pred chhhhccCCcccCCCCCCCcccchHHHHHHHHHHHH--hhcCCCchHHHHHHHHHHHHHHcCCCCCcHH
Q 025163 178 NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALG--DENAVSMPIAAAANEAFKKARSLGLGDNDFS 244 (257)
Q Consensus 178 s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~ 244 (257)
. ++|.- ..|+. .++..+.-.+.+.+.. ...-.|.|+++...+.-+.+.+.|.|..+|.
T Consensus 227 ~-----mGPf~-l~D~~---Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~ 286 (503)
T TIGR02279 227 P-----MGPFE-LTDLI---GHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYR 286 (503)
T ss_pred C-----cCHHH-HHHHh---hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCC
Confidence 2 11100 01111 1222222222222211 1112345666666655556677777777764
No 47
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.78 E-value=2.3e-17 Score=141.60 Aligned_cols=171 Identities=12% Similarity=0.157 Sum_probs=132.5
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 025163 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (257)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (257)
|||.|.|+|+- |.+||.+|+++||+|++|||+++ +.+.+.+.|++.++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 89999999974 88899999999999999999987 556677789988889999999
Q ss_pred cCceEEEccCChHHHHHH---HH---hcCCcEEeccc---------------------------cCCccccccCcEEEEe
Q 025163 56 KCTITIGMLADPAAALSA---IT---SKGGHFLEAPV---------------------------SGSKQPAETGQLVILS 102 (257)
Q Consensus 56 ~~dvii~~v~~~~~~~~~---~~---~~g~~~~~~pv---------------------------~~~~~~~~~~~~~~~~ 102 (257)
++|+||+|+|++...+.. +. ..+..+++..- .++......+.+.++.
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~ 160 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIA 160 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEe
Confidence 999999999988744430 00 01111122100 1111222333445665
Q ss_pred cC--------ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 103 AG--------EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 103 ~g--------~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
++ +++.+++++++|+.+|.++++++. +.+..+|+++|++.+....+..|++.++++.+.+++.+.+-+-
T Consensus 161 gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~ 237 (342)
T PRK12557 161 GKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQI 237 (342)
T ss_pred CCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54 888999999999999998877774 9999999999999999999999999999999999987775544
No 48
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.78 E-value=2.6e-17 Score=140.27 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=142.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----------cCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|||+|||+|.||+.+|..|.++|++|++++|++++.+.+++.|... ..++.++ +++|+||+|||..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~ 79 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL 79 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH
Confidence 8999999999999999999999999999999989988888777532 3455555 889999999998765
Q ss_pred HHH--HHHh---cCCcEEe--cc--------------------------ccCC--ccccccCcEEEEecC-C--hhhHHH
Q 025163 70 ALS--AITS---KGGHFLE--AP--------------------------VSGS--KQPAETGQLVILSAG-E--KALYDE 111 (257)
Q Consensus 70 ~~~--~~~~---~g~~~~~--~p--------------------------v~~~--~~~~~~~~~~~~~~g-~--~~~~~~ 111 (257)
... .+.. .+..++. .+ ..++ ......+. +.+|. + .+..+.
T Consensus 80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~ 157 (304)
T PRK06522 80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEA 157 (304)
T ss_pred HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHH
Confidence 443 1110 0111110 00 0011 01111122 22222 2 233667
Q ss_pred HHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--HHHH
Q 025163 112 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP--RTLL 168 (257)
Q Consensus 112 ~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~~--~~~~ 168 (257)
+.++|...+.++....++....|.|++.|...+. +...+.|+..++++.|+++ +.+.
T Consensus 158 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 237 (304)
T PRK06522 158 LADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVR 237 (304)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 8888888888776676799999999998865543 2457889999999988653 4444
Q ss_pred HHHhhc-----CCCchhhhc-cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163 169 DVLDLG-----GIANPMFKG-KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 235 (257)
Q Consensus 169 ~~~~~~-----~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 235 (257)
+.+... ...+.+... ...+...-|+ =.+.+++.++++|+++|..+.++++++...+
T Consensus 238 ~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~-----------i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 238 EYVRQVIQKTAANTSSMLQDLEAGRPTEIDA-----------IVGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHhhccCCCCchHHHHHHcCCCcccch-----------hccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 433321 111111110 0011111111 1266899999999999999999999877644
No 49
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.77 E-value=7.4e-17 Score=135.62 Aligned_cols=166 Identities=18% Similarity=0.330 Sum_probs=124.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhcCceEEEccCChHHHHH-----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALS----- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~----- 72 (257)
|||+|||+|.||..++..|.++|+ +|++|||++++.+.+.+.|+. ...++.++. ++|+||+|||.....+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHh
Confidence 899999999999999999999996 799999999999988888864 455777765 59999999998776654
Q ss_pred --------------------HHHh-cCCcEEec-cccCC----cccc----ccCcEEEEec---CChhhHHHHHHHHHHh
Q 025163 73 --------------------AITS-KGGHFLEA-PVSGS----KQPA----ETGQLVILSA---GEKALYDEAISALNVI 119 (257)
Q Consensus 73 --------------------~~~~-~g~~~~~~-pv~~~----~~~~----~~~~~~~~~~---g~~~~~~~~~~~l~~~ 119 (257)
.+.. .+..|+.. |+.|. +..+ ..+...++.+ .+++.++.++++++.+
T Consensus 80 ~l~~~~iv~d~gs~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~ 159 (275)
T PRK08507 80 DIKENTTIIDLGSTKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGL 159 (275)
T ss_pred ccCCCCEEEECccchHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 1111 22457775 88653 3322 2566656664 4567889999999999
Q ss_pred cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 120 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 120 ~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
|.+++++++.++...+++++++.. ....++.+++ . .+.+.+.+.++..
T Consensus 160 G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~~ 207 (275)
T PRK08507 160 GMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLAG 207 (275)
T ss_pred CCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhcc
Confidence 999999999999999999999864 4444555543 1 3556666555544
No 50
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.75 E-value=1.7e-16 Score=135.90 Aligned_cols=214 Identities=20% Similarity=0.205 Sum_probs=140.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+|.||+.+|..|+++||+|+++.|++ .+.+.+.|... .+++ +....+|+||+|||.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~ 82 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT 82 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence 799999999999999999999999999999975 35565555321 1122 345678999999998
Q ss_pred hHHHHH-------------------------HHHhc--------CCcEEeccccCCcc--ccccCcEEEE-ecC-C----
Q 025163 67 PAAALS-------------------------AITSK--------GGHFLEAPVSGSKQ--PAETGQLVIL-SAG-E---- 105 (257)
Q Consensus 67 ~~~~~~-------------------------~~~~~--------g~~~~~~pv~~~~~--~~~~~~~~~~-~~g-~---- 105 (257)
.+..+. .+... ++.++.+...++.. ....+.+.+- ..+ +
T Consensus 83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~ 162 (313)
T PRK06249 83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDG 162 (313)
T ss_pred CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccch
Confidence 765443 11111 12222222222221 1112332221 122 2
Q ss_pred -hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCC
Q 025163 106 -KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLD 163 (257)
Q Consensus 106 -~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~---------------------~~~~~E~~~l~~~~g~~ 163 (257)
.+..+.+.++|+..+..+....++....|.|++.|...+.. ...+.|+..++++.|++
T Consensus 163 ~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~ 242 (313)
T PRK06249 163 ITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHT 242 (313)
T ss_pred HHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCC
Confidence 35566788889999988888888999999999988765432 45788999999998876
Q ss_pred H--HHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHH
Q 025163 164 P--RTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEA 229 (257)
Q Consensus 164 ~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~ 229 (257)
. +.+.+.+...... +. ..+.|+.|+ +.+++.++++|+++|..+.++++
T Consensus 243 ~~~~~~~~~~~~~~~~-----------------~~-~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~Gi~~P~~~~l~~~ 304 (313)
T PRK06249 243 LPEGYADHMLAVTERM-----------------PD-YRPSMYHDFEEGRPLELEAIYANPLAAARAAGCAMPRVEMLYQA 304 (313)
T ss_pred CChhHHHHHHHHhhcC-----------------CC-CCChHHHHHHCCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHH
Confidence 2 2232222211000 00 112344443 78999999999999999999999
Q ss_pred HHHHHH
Q 025163 230 FKKARS 235 (257)
Q Consensus 230 ~~~~~~ 235 (257)
++...+
T Consensus 305 l~~~e~ 310 (313)
T PRK06249 305 LEFLDR 310 (313)
T ss_pred HHHHHh
Confidence 887644
No 51
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.74 E-value=3e-16 Score=131.41 Aligned_cols=226 Identities=16% Similarity=0.156 Sum_probs=143.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC---CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
|||+|||+|.||..++..|.++| ++|.+|+|++++.+++.+. |+....+..++++++|+||+|||+....+. .+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence 68999999999999999999998 7899999999999988875 887888888888999999999998765544 11
Q ss_pred Hh-----------------------cCCcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCC
Q 025163 75 TS-----------------------KGGHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGE 128 (257)
Q Consensus 75 ~~-----------------------~g~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~ 128 (257)
.. .+..++. .| ..+.....+...+..+. +++.++.++++|+.+|. ++++.+
T Consensus 83 ~~~~~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~ 159 (267)
T PRK11880 83 KGQLDKLVVSIAAGVTLARLERLLGADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDD 159 (267)
T ss_pred HhhcCCEEEEecCCCCHHHHHHhcCCCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECC
Confidence 11 1122222 11 11222233333333333 78888999999999996 566663
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCC---cccchHH
Q 025163 129 -VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPA---FPLKHQQ 203 (257)
Q Consensus 129 -~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~---~~~~~~~ 203 (257)
...-...-+..+.. +....++..+...+.+.|++++...+++.... +...... ..+.++. ..+....
T Consensus 160 e~~~d~~~a~~~~~p-a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~-------~~~~~~~~l~~~v~tpg 231 (267)
T PRK11880 160 EKQMDAVTAVSGSGP-AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLL-------ESGEHPAELRDNVTSPG 231 (267)
T ss_pred hHhcchHHHHhcChH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHhCCCCc
Confidence 22211222222211 12223344444457779999998888776431 1111111 1111110 0011111
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163 204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLG 237 (257)
Q Consensus 204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 237 (257)
.-....++..++.|++-.+.+++.+.++++.+.+
T Consensus 232 G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 232 GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 2235678888889999999999999999988754
No 52
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.74 E-value=3.2e-17 Score=138.02 Aligned_cols=150 Identities=17% Similarity=0.274 Sum_probs=115.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||+|.||..++..|.++|++|++||+++++.+++.+.|.. ...+..+.++++|+||+|+|.....+.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~ 80 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA 80 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999998888753 233333567899999999997766543
Q ss_pred -------------------HHHhcCCcEEe-ccccCCcc-cc-------ccCcEEEEec---CChhhHHHHHHHHHHhcC
Q 025163 73 -------------------AITSKGGHFLE-APVSGSKQ-PA-------ETGQLVILSA---GEKALYDEAISALNVIGK 121 (257)
Q Consensus 73 -------------------~~~~~g~~~~~-~pv~~~~~-~~-------~~~~~~~~~~---g~~~~~~~~~~~l~~~~~ 121 (257)
.+......|+. +|+++++. .. ..+...+++. ++++.++.++++++.+|.
T Consensus 81 l~~~~ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~ 160 (279)
T PRK07417 81 LPPEAIVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGS 160 (279)
T ss_pred CCCCcEEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence 22223345776 78887652 22 2333333332 477888999999999999
Q ss_pred CeEEeCCCChHHHHHHHHHHHHHHHHHHH
Q 025163 122 KAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150 (257)
Q Consensus 122 ~~~~~g~~g~a~~~kl~~n~~~~~~~~~~ 150 (257)
+++++++.++...+++++|....+...++
T Consensus 161 ~~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 161 KIYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred EEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 99999999999999999998766554443
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=3e-16 Score=132.68 Aligned_cols=167 Identities=17% Similarity=0.255 Sum_probs=119.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------------CCcccCCHHHHhh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------------GATVGGSPAEVIK 55 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------------g~~~~~~~~~~~~ 55 (257)
+||+|||+|.||..+|..|+.+|++|++||+++++++++.+. +++.+++++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 479999999999999999999999999999998876655321 2345778888899
Q ss_pred cCceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEe---c
Q 025163 56 KCTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILS---A 103 (257)
Q Consensus 56 ~~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~---~ 103 (257)
++|+||.|+|....... .+. .+...|+..+.+.++ ....++.++ .
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~---~~~~lvevv~~~~ 160 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEI---WKNNTAEIMGHPG 160 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCC---CcCCeEEEeCCCC
Confidence 99999999998754433 000 111223333332221 122344444 3
Q ss_pred CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
.+++.++.+.++++.+|+.++.+..-..+....-+ ....++|++.++++.-.+++++..++..+.+.
T Consensus 161 t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi-------~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~ 227 (287)
T PRK08293 161 TDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSL-------LVPFLSAALALWAKGVADPETIDKTWMIATGA 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHH-------HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 47889999999999999988888644555554433 34567799999888778999999998766443
No 54
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=7.3e-16 Score=129.99 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=117.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHH-----------HHHCCC-------------cccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHGA-------------TVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~-----------l~~~g~-------------~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..||..|+.+||+|++||++++.+++ +.+.|. +.++++ +.++++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~ 85 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR 85 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence 7999999999999999999999999999999998776 344442 256777 557899
Q ss_pred ceEEEccCChHHHHH-------HHH-hcCCcEEe----------------------ccccCCccccccCcEEEEecCChh
Q 025163 58 TITIGMLADPAAALS-------AIT-SKGGHFLE----------------------APVSGSKQPAETGQLVILSAGEKA 107 (257)
Q Consensus 58 dvii~~v~~~~~~~~-------~~~-~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g~~~ 107 (257)
|+||.|+|.+...+. ... ..+..+.+ .+.+.++....--.++...+++++
T Consensus 86 d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~ 165 (286)
T PRK07819 86 QLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEA 165 (286)
T ss_pred CEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHH
Confidence 999999999988776 111 12222222 111211111111122233356899
Q ss_pred hHHHHHHHHH-HhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 108 LYDEAISALN-VIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 108 ~~~~~~~~l~-~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
.++++.+++. .+++.++.+++ ..+.... .+....++|++.+.++.-.+++++..++..+.+.
T Consensus 166 ~~~~~~~~~~~~lgk~pv~v~d-~pGfi~n-------Ri~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~ 228 (286)
T PRK07819 166 TVARAEEFASDVLGKQVVRAQD-RSGFVVN-------ALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAH 228 (286)
T ss_pred HHHHHHHHHHHhCCCCceEecC-CCChHHH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 9999999988 59999888876 3343322 2345677799999987777899999998766444
No 55
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.72 E-value=4.2e-16 Score=132.74 Aligned_cols=219 Identities=15% Similarity=0.098 Sum_probs=142.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccC-----------CHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGG-----------SPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~-----------~~~~~~~~~dvii~~v~~~~ 68 (257)
|||+|||+|.||+.+|..|.+.|++|++++|..++++.+++. |+.... ...+.....|+||+||+..+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 899999999999999999999999999999988889888764 432211 11122346899999999887
Q ss_pred HHHH-------------------------HHHhc-C-------CcEEeccccCCccccccCcEEEEecC-ChhhHHHHHH
Q 025163 69 AALS-------------------------AITSK-G-------GHFLEAPVSGSKQPAETGQLVILSAG-EKALYDEAIS 114 (257)
Q Consensus 69 ~~~~-------------------------~~~~~-g-------~~~~~~pv~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 114 (257)
..+. .+... + +.++.+...++......+.-.+.+|. +.+..+++.+
T Consensus 83 ~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~~~l~~ 162 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTAPAWLD 162 (305)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcchHHHHH
Confidence 6654 11111 1 11111111111111222222233332 3344577888
Q ss_pred HHHHhcCCeEEeCCCChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHHHHhhc
Q 025163 115 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC------------------MMNTFSEGLVLAEKSGLDP--RTLLDVLDLG 174 (257)
Q Consensus 115 ~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~------------------~~~~~~E~~~l~~~~g~~~--~~~~~~~~~~ 174 (257)
+|...+..+.+..++....|.|++.|...+. +...+.|+..++++.|++. +.+.+.+..-
T Consensus 163 ~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~~~~~ 242 (305)
T PRK05708 163 DLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEEVQRV 242 (305)
T ss_pred HHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 8888887777777799999999998876553 2456788888899888752 2232222210
Q ss_pred CCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 175 GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 175 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
... .....+.|+.|+ +.+++.++++|+|+|..+.++++++....+
T Consensus 243 ------~~~-----------~~~~~sSM~qD~~~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~ 299 (305)
T PRK05708 243 ------IQA-----------TAANYSSMYQDVRAGRRTEISYLLGYACRAADRHGLPLPRLQHLQQRLVAHLRA 299 (305)
T ss_pred ------HHh-----------ccCCCcHHHHHHHcCCceeehhhhhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence 000 001123344443 779999999999999999999998876664
No 56
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=8.4e-16 Score=130.34 Aligned_cols=158 Identities=20% Similarity=0.309 Sum_probs=112.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (257)
+||+|||+|.||..+|..|+++|++|++||+++++++.+.+ .| ++.+++++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 47999999999999999999999999999999988776432 23 34556664 5789
Q ss_pred CceEEEccCChHHHHH--------------------------HHHh--------cCCcEEe-ccccCCccccccCcEEEE
Q 025163 57 CTITIGMLADPAAALS--------------------------AITS--------KGGHFLE-APVSGSKQPAETGQLVIL 101 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~--------------------------~~~~--------~g~~~~~-~pv~~~~~~~~~~~~~~~ 101 (257)
+|+||.|+|.....+. .+.. .|++|++ .|+. .++.+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~---------~~vei 154 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVM---------KLVEL 154 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccC---------ceEEE
Confidence 9999999998755433 1111 0222222 1111 11222
Q ss_pred ---ecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163 102 ---SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 176 (257)
Q Consensus 102 ---~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~ 176 (257)
.+++++.++.+.++++.+|+.++++++.+ -++.++.+ ...+.|++.+.++.-.+++++..++..+.+
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g 224 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGSVEAIDTAMKLGAN 224 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 24689999999999999999999888744 33444433 556789998888855689999988875544
No 57
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.71 E-value=1.9e-15 Score=132.03 Aligned_cols=152 Identities=20% Similarity=0.319 Sum_probs=122.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------- 72 (257)
++|+||| +|.||..+|..|.++||+|++|||++. .+++++++++|+||+|+|.....+.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l 165 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLTEEVIARLPPL 165 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCC
Confidence 5799998 999999999999999999999999631 3567788899999999998876554
Q ss_pred ------------------HHH-hcCCcEE-eccccCCccccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCCh
Q 025163 73 ------------------AIT-SKGGHFL-EAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGN 131 (257)
Q Consensus 73 ------------------~~~-~~g~~~~-~~pv~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~ 131 (257)
.+. .....|+ .+|++|+......+...++.++ +++.++.++++++.+|.+++++++.++
T Consensus 166 ~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~H 245 (374)
T PRK11199 166 PEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEH 245 (374)
T ss_pred CCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHH
Confidence 111 1223577 7999998777667776677766 567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163 132 GAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 169 (257)
Q Consensus 132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~ 169 (257)
...+++++.+ .++.++.++..+++ .+.+.+.+.+
T Consensus 246 D~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 246 DQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999844 67777888888766 7777666543
No 58
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=5.4e-15 Score=125.79 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=121.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC---------CcccCCHHHHhhcCceEE
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG---------ATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g---------~~~~~~~~~~~~~~dvii 61 (257)
||+|||+|.||..+|..|+.+|++|++||++++..+++.+ .| +...+++++++++||+|+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlVi 88 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQ 88 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEE
Confidence 7999999999999999999999999999999886654322 22 355678889999999999
Q ss_pred EccCChHHHHH-------HHHhcCC----------------------cEEeccccCCccccccCcEEEEecC---ChhhH
Q 025163 62 GMLADPAAALS-------AITSKGG----------------------HFLEAPVSGSKQPAETGQLVILSAG---EKALY 109 (257)
Q Consensus 62 ~~v~~~~~~~~-------~~~~~g~----------------------~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~ 109 (257)
.|+|.....+. .....+. .++..+.+-++... .++-++.+ +++..
T Consensus 89 EavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~ 165 (321)
T PRK07066 89 ESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLL---PLVEVLGGERTAPEAV 165 (321)
T ss_pred ECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccC---ceEEEeCCCCCCHHHH
Confidence 99999887776 0111111 22232222222211 33444443 68889
Q ss_pred HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163 110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP 179 (257)
Q Consensus 110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~ 179 (257)
+.+.++++.+|++++.+..--.+.... -+...++.|++.+.++...+++++..++..+.+..|
T Consensus 166 ~~~~~f~~~lGk~pV~v~kd~pGFi~N-------Rl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 166 DAAMGIYRALGMRPLHVRKEVPGFIAD-------RLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred HHHHHHHHHcCCEeEecCCCCccHHHH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 999999999998888885324444432 234567889999999988999999999988766654
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.70 E-value=3.5e-15 Score=132.68 Aligned_cols=167 Identities=21% Similarity=0.290 Sum_probs=123.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALS------ 72 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------ 72 (257)
|||+||| +|.||..++..|.++|++|++|+|++++.+++. +.|+....++.+++.++|+||+|+|.......
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~ 80 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP 80 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence 8999997 899999999999999999999999988865554 45777777888889999999999998655433
Q ss_pred --------------------HHH---hcCCcEEec-cccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEE
Q 025163 73 --------------------AIT---SKGGHFLEA-PVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 73 --------------------~~~---~~g~~~~~~-pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~ 125 (257)
.+. ..+..|+.+ |++|+......+...++.++ +++.++.++++|+.+|.++++
T Consensus 81 ~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~ 160 (437)
T PRK08655 81 HVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIV 160 (437)
T ss_pred hCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111 235678875 88887666667776666654 577889999999999999888
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163 126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 171 (257)
Q Consensus 126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~ 171 (257)
+++..+. ++..+.....+..++..+..+ .+.|++.+....+.
T Consensus 161 ~~~e~HD---~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a 202 (437)
T PRK08655 161 TSPEEHD---RIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKFA 202 (437)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence 8765444 334444444555555555544 66788877655443
No 60
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=1.7e-15 Score=126.65 Aligned_cols=223 Identities=14% Similarity=0.167 Sum_probs=142.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~ 73 (257)
|||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+ .|+....+..++++++|+||+|||+....+. .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~ 82 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ 82 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence 689999999999999999999885 69999999999998875 6887788888999999999999997544443 1
Q ss_pred HH---hcCCcEEe-----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEE
Q 025163 74 IT---SKGGHFLE-----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 74 ~~---~~g~~~~~-----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~ 125 (257)
+. ..+..+++ +|.. +.....+...+..+. +++..+.++.+|+.+|. ++.
T Consensus 83 l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~ 159 (272)
T PRK12491 83 IKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQ-TEV 159 (272)
T ss_pred HHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCC-EEE
Confidence 11 11222333 1211 223333433333322 34566789999999996 456
Q ss_pred eCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--CC-cccCCCCCCCccc
Q 025163 126 LGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--GP-TMLQSNYAPAFPL 199 (257)
Q Consensus 126 ~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~~-~~~~~~~~~~~~~ 199 (257)
+.+ ......+-=+...+.+.++.++.++ +.+.|+++++..+++.... +...++... .+ .+.+.-.+|+-+
T Consensus 160 ~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGt- 235 (272)
T PRK12491 160 VNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGT- 235 (272)
T ss_pred EcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchH-
Confidence 654 2222222222334555555566565 7788999999888877542 222222111 01 111222233322
Q ss_pred chHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 200 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 200 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
....++..++.|+.--+.+++....+++.+.
T Consensus 236 ------T~~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 236 ------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred ------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 2345677778888888888888888877663
No 61
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=1.8e-15 Score=126.13 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=109.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~ 73 (257)
|||+|||+|+||.++++.|.+.|++ +.+|+|++++.+.+.+. +.....++.++++++|+||+|||+....+. .
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 8999999999999999999998864 58899999999888775 567778899999999999999996443332 0
Q ss_pred HH-hcC-----------------------CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCC
Q 025163 74 IT-SKG-----------------------GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV 129 (257)
Q Consensus 74 ~~-~~g-----------------------~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~ 129 (257)
+. ..+ ..+..+|+. +.....+. ..+.+++ +.++++|+.+|..+. +++.
T Consensus 81 l~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~--~~a~~~g~-t~~~~~~----~~~~~l~~~lG~~~~-~~~e 152 (258)
T PRK06476 81 LRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLP--FVAERKGV-TAIYPPD----PFVAALFDALGTAVE-CDSE 152 (258)
T ss_pred hccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCC--hhhhCCCC-eEecCCH----HHHHHHHHhcCCcEE-ECCh
Confidence 10 012 223334432 11112222 2333332 579999999997654 5432
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163 130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173 (257)
Q Consensus 130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~ 173 (257)
..-..+-.+. ...+....++.++...+++.|++++...+++..
T Consensus 153 ~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~ 195 (258)
T PRK06476 153 EEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAP 195 (258)
T ss_pred Hhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1111111111 133334457888889999999999998888774
No 62
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.69 E-value=1.5e-15 Score=128.82 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=149.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc------------CCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------------GSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~------------~~~~~~~~~~dvii~~v~~~~ 68 (257)
|||+|+|+|.||+.++..|.++|++|+++.|++. ++++++.|+... ....+....+|+||++|++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 8999999999999999999999999999999755 899988764321 122344458999999999988
Q ss_pred HHHH-------------------------HHHhc--------CCcEEeccccCCcc--ccccCcEE--EEecCChhhHHH
Q 025163 69 AALS-------------------------AITSK--------GGHFLEAPVSGSKQ--PAETGQLV--ILSAGEKALYDE 111 (257)
Q Consensus 69 ~~~~-------------------------~~~~~--------g~~~~~~pv~~~~~--~~~~~~~~--~~~~g~~~~~~~ 111 (257)
..+. .+... |+....+--.++.. ....|.+. ...+++++..+.
T Consensus 80 ~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~ 159 (307)
T COG1893 80 LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKA 159 (307)
T ss_pred HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHH
Confidence 7766 11111 11111111111111 11122222 122345577889
Q ss_pred HHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcC--CCHHHHH
Q 025163 112 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSG--LDPRTLL 168 (257)
Q Consensus 112 ~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~---------------------~~~~~E~~~l~~~~g--~~~~~~~ 168 (257)
+.+.|+..+.++.+..++-...|.|++.|...+.. ...+.|...++.+.| ++.+.+.
T Consensus 160 i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~ 239 (307)
T COG1893 160 LAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVE 239 (307)
T ss_pred HHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 99999999999888888999999999999877733 458889999999988 4443333
Q ss_pred ---HHHhhc--CCCchhhhcc-CCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 169 ---DVLDLG--GIANPMFKGK-GPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 169 ---~~~~~~--~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
..+... ...|++.+.. ..+...-|+. .+.+++.++++|+++|..+.++++++.....
T Consensus 240 ~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i-----------~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 240 RVLAVIRATDAENYSSMLQDLEKGRPTEIDAI-----------NGAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHhcccccCchHHHHHHcCCcccHHHH-----------hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 333333 2333333221 1122222222 2668999999999999999999999977553
No 63
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.67 E-value=4.2e-15 Score=126.25 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=113.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHH-----------HHHCC------------CcccCCHHHHhhcCc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG------------ATVGGSPAEVIKKCT 58 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~-----------l~~~g------------~~~~~~~~~~~~~~d 58 (257)
||+|||+|.||..||..|+++|++|++||+++++++. +.+.| .....+..+++++||
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD 85 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDAD 85 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCC
Confidence 6999999999999999999999999999999988753 33333 122233346789999
Q ss_pred eEEEccCChHHHHH--------------------------HHHh--------cCCcEEeccccCCccccccCcEEEEec-
Q 025163 59 ITIGMLADPAAALS--------------------------AITS--------KGGHFLEAPVSGSKQPAETGQLVILSA- 103 (257)
Q Consensus 59 vii~~v~~~~~~~~--------------------------~~~~--------~g~~~~~~pv~~~~~~~~~~~~~~~~~- 103 (257)
+||.|||.+...+. .+.. .+++|++.|.. ..++.++.
T Consensus 86 ~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~--------~~lveiv~g 157 (295)
T PLN02545 86 FIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPI--------MKLVEIIRG 157 (295)
T ss_pred EEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCccc--------CceEEEeCC
Confidence 99999997777655 0000 12222222221 23345554
Q ss_pred --CChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 104 --GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 104 --g~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
++++.++.++++++.+|..++++++ .| . +.+. ++...++|++.+.++...+++++..++..+.+.
T Consensus 158 ~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g--~---i~nr----i~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~ 225 (295)
T PLN02545 158 ADTSDEVFDATKALAERFGKTVVCSQDYPG--F---IVNR----ILMPMINEAFYALYTGVASKEDIDTGMKLGTNH 225 (295)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeEEecCccc--H---HHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 4788999999999999999988877 33 2 2222 335568899999988878899999888765443
No 64
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.67 E-value=3.5e-15 Score=126.48 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=112.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH--------------CCC-------------cccCCHHHHh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI 54 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~~ 54 (257)
||+|||+|.||..+|..|+.+|++|++||+++++++...+ .|. ...++. +++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 83 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL 83 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence 7999999999999999999999999999999988764321 121 234445 567
Q ss_pred hcCceEEEccCChHHHHH----HHHh---c---------------------------CCcEEe-ccccCCccccccCcEE
Q 025163 55 KKCTITIGMLADPAAALS----AITS---K---------------------------GGHFLE-APVSGSKQPAETGQLV 99 (257)
Q Consensus 55 ~~~dvii~~v~~~~~~~~----~~~~---~---------------------------g~~~~~-~pv~~~~~~~~~~~~~ 99 (257)
+++|+||.|+|.+...+. .+.. . |.+|++ +|+.+ ++
T Consensus 84 ~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~---------~v 154 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMK---------LI 154 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc---------cE
Confidence 899999999998865443 0110 1 122222 11111 11
Q ss_pred EEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163 100 ILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 176 (257)
Q Consensus 100 ~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~ 176 (257)
-+.. .+++.++.+.++++.+|+.++++++.+.....|+..| .++|++.+.++.-.+++++..++..+.+
T Consensus 155 Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~~~g 226 (291)
T PRK06035 155 EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKLAFG 226 (291)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhhcCC
Confidence 2222 2688999999999999999999988777777777666 4568888887754689999998876544
Q ss_pred C
Q 025163 177 A 177 (257)
Q Consensus 177 ~ 177 (257)
.
T Consensus 227 ~ 227 (291)
T PRK06035 227 F 227 (291)
T ss_pred C
Confidence 3
No 65
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.67 E-value=6.5e-15 Score=121.18 Aligned_cols=224 Identities=18% Similarity=0.213 Sum_probs=141.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~ 73 (257)
|||+|||+|+||.+|+..|.++| .+|++.+|++++.+.+.+ .|+..+++..++++.+|+||+||++....+. .
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~ 81 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSK 81 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHHH
Confidence 68999999999999999999999 689999999999975554 5776677888999999999999998766555 2
Q ss_pred HHh--cCCcEEe----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeC
Q 025163 74 ITS--KGGHFLE----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLG 127 (257)
Q Consensus 74 ~~~--~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g 127 (257)
++. .+-.+++ +|.+ +.....+...+..+. +++..+.+.++|+.+|. ++.+.
T Consensus 82 l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~ 158 (266)
T COG0345 82 LKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVE 158 (266)
T ss_pred hhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEec
Confidence 221 1212222 2221 223333443333332 56777789999999995 56776
Q ss_pred CCChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhccCC---cccCCCCCCCcccch
Q 025163 128 EVGNGAKMK--LVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKGP---TMLQSNYAPAFPLKH 201 (257)
Q Consensus 128 ~~g~a~~~k--l~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~~---~~~~~~~~~~~~~~~ 201 (257)
+.--..+.- =....+.+.++.++.++ +.+.|++++...+++.... +...++..... .+...-.+|+-+..
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTi- 234 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTI- 234 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHH-
Confidence 522222222 22334555555555555 7889999999988877541 22222222111 11222234443322
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163 202 QQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 237 (257)
Q Consensus 202 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 237 (257)
..++..++.|+..-+.+++...++++.+-|
T Consensus 235 ------agl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 235 ------AGLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred ------HHHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 234555577888888888888777776643
No 66
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.7e-14 Score=121.73 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=112.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-----------HHHHCC-------------CcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..+|..|+++|++|++||+++++++ .+.+.| ++.+++.+ .++++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a 83 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA 83 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 699999999999999999999999999999999875 334444 23355665 47899
Q ss_pred ceEEEccCChHHHHH----HHH-------------------------hcCCcEEeccccCCccccccCcEEEEe---cCC
Q 025163 58 TITIGMLADPAAALS----AIT-------------------------SKGGHFLEAPVSGSKQPAETGQLVILS---AGE 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~----~~~-------------------------~~g~~~~~~pv~~~~~~~~~~~~~~~~---~g~ 105 (257)
|+||+|+|.+...+. .+. .+.-.++....+.+... ..+..++ +.+
T Consensus 84 DlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~---~~~vev~~g~~t~ 160 (282)
T PRK05808 84 DLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPV---MKLVEIIRGLATS 160 (282)
T ss_pred CeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCccc---CccEEEeCCCCCC
Confidence 999999997666443 010 11112333222211111 1112233 347
Q ss_pred hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163 106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~ 177 (257)
++.++.+.++++.+|+.++++++ ..+... ..++...++|+..+.++.-.+++++..++..+.++
T Consensus 161 ~e~~~~~~~l~~~lGk~pv~~~d-~~g~i~-------~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~ 224 (282)
T PRK05808 161 DATHEAVEALAKKIGKTPVEVKN-APGFVV-------NRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNH 224 (282)
T ss_pred HHHHHHHHHHHHHcCCeeEEecC-ccChHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 89999999999999999999976 333332 23445677899999988767899999988765443
No 67
>PRK07680 late competence protein ComER; Validated
Probab=99.62 E-value=4e-14 Score=118.92 Aligned_cols=170 Identities=15% Similarity=0.222 Sum_probs=111.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+|.||.+++..|.++|+ +|.+|+|++++.+.+.+. |+....++.++++++|+||+|||+....+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 899999999999999999999984 799999999998888764 677788888988999999999997764443
Q ss_pred HHHh---cCCcEEecc--cc-----------------CCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCC
Q 025163 73 AITS---KGGHFLEAP--VS-----------------GSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGE 128 (257)
Q Consensus 73 ~~~~---~g~~~~~~p--v~-----------------~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~ 128 (257)
.+.. .+..+++.. +. ..+.....|...+..+ .+.+.++.++++|+.+|. ++++.+
T Consensus 81 ~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 81 KLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEECh
Confidence 1111 122233211 10 0112233455544444 355677899999999994 566655
Q ss_pred -CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163 129 -VGNGAK-MKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173 (257)
Q Consensus 129 -~g~a~~-~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~ 173 (257)
...... +--+...+.+..+.++.++. .++.|+++++..+++..
T Consensus 160 ~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 160 DITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASE 204 (273)
T ss_pred HhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHH
Confidence 222211 11112234444455555543 34489999988877664
No 68
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.57 E-value=1.7e-12 Score=110.91 Aligned_cols=142 Identities=18% Similarity=0.296 Sum_probs=104.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALS---- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~---- 72 (257)
|||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|. ....++.++++++|+||+|+|.......
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l 86 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI 86 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 589999999999999999999985 89999999999888888775 3456777888999999999998654322
Q ss_pred ----------------------HHH---hcCCcEEec-cccCCcc-cc-------ccCcEEEEe---cCChhhHHHHHHH
Q 025163 73 ----------------------AIT---SKGGHFLEA-PVSGSKQ-PA-------ETGQLVILS---AGEKALYDEAISA 115 (257)
Q Consensus 73 ----------------------~~~---~~g~~~~~~-pv~~~~~-~~-------~~~~~~~~~---~g~~~~~~~~~~~ 115 (257)
.+. ..++.|+.+ |+.++.. .. ..+...++. +++++.++.++++
T Consensus 87 ~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l 166 (307)
T PRK07502 87 APHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAF 166 (307)
T ss_pred HhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHH
Confidence 111 134567775 7776432 11 123323333 4578889999999
Q ss_pred HHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163 116 LNVIGKKAFFLGEVGNGAKMKLVVNMI 142 (257)
Q Consensus 116 l~~~~~~~~~~g~~g~a~~~kl~~n~~ 142 (257)
++.+|.+++++++..+...+-++....
T Consensus 167 ~~~lG~~~~~~~~~~hD~~~A~~s~lp 193 (307)
T PRK07502 167 WRALGARVEEMDPEHHDLVLAITSHLP 193 (307)
T ss_pred HHHcCCEEEEcCHHHHhHHHHHHhhHH
Confidence 999999988888766666655555543
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=4.4e-13 Score=116.75 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=113.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc----ccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----VGGSPAEVIKKCTITIGMLADPAAALS---- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~~dvii~~v~~~~~~~~---- 72 (257)
+||+|||+|.||..++..|.++|++|.+|++++++.+.....+.. ..+++.++++++|+||+|||.....+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l 80 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL 80 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence 489999999999999999999999999999988776555444432 235677888999999999998755433
Q ss_pred -----------------------HHH---hcCCcEEe-ccccCCcc--------ccccCcEEEEec---CChhhHHHHHH
Q 025163 73 -----------------------AIT---SKGGHFLE-APVSGSKQ--------PAETGQLVILSA---GEKALYDEAIS 114 (257)
Q Consensus 73 -----------------------~~~---~~g~~~~~-~pv~~~~~--------~~~~~~~~~~~~---g~~~~~~~~~~ 114 (257)
.+. ..+..|+. .|+.++.. ....+...++.. .+++.++.+++
T Consensus 81 ~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~ 160 (359)
T PRK06545 81 ADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKD 160 (359)
T ss_pred hhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHH
Confidence 111 13456777 67776531 223444344444 46788999999
Q ss_pred HHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 115 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 115 ~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
+++.+|..++++.+..+...+.++......+. +++ +...+.+.+....+..
T Consensus 161 l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 161 LLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhc
Confidence 99999998888887677777776665543322 222 4444555554444443
No 70
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=3e-13 Score=111.82 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=107.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcC-CchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNR-TLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r-~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+|.||.+++..|.++|+ ++++++| ++++.+.+.+. ++....+++++++++|+||+|+|+....+.
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~ 84 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLA 84 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHHH
Confidence 579999999999999999998873 3777887 46788888764 777778888999999999999998866554
Q ss_pred HHHh--cCCcEEe-----------------------ccccCCccccccCcEE--EEecCChhhHHHHHHHHHHhcCCeEE
Q 025163 73 AITS--KGGHFLE-----------------------APVSGSKQPAETGQLV--ILSAGEKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 73 ~~~~--~g~~~~~-----------------------~pv~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~~~~~~ 125 (257)
.+.. .+-.+++ +|.+.. ....+... .....+++..+.++++|+.+|..+ +
T Consensus 85 ~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~-~ 161 (245)
T PRK07634 85 ELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLILKGIGTSQ-L 161 (245)
T ss_pred HHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEE-E
Confidence 1111 1111222 222211 12222211 222357788899999999999765 4
Q ss_pred eCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163 126 LGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173 (257)
Q Consensus 126 ~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~ 173 (257)
+.+ ......+--....+.+.++..+.+ .+.+.|+++++..+++..
T Consensus 162 ~~e~~~~~~~a~~gs~pa~~~~~~~a~~~---~~~~~Gl~~~~a~~~~~~ 208 (245)
T PRK07634 162 CTEEEVHQLTAVTGSAPAFLYYFAESLIE---ATKSYGVDEETAKHLVIQ 208 (245)
T ss_pred ECHHHcchHHhhhcchHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHH
Confidence 544 222222222222233333444444 488899999988887764
No 71
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.52 E-value=3.7e-14 Score=109.28 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=60.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+ +..++|++++++++|+|+++||+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 799999999999999999999999999999999999887632 345778999999999999999998
Q ss_pred HHHHH
Q 025163 68 AAALS 72 (257)
Q Consensus 68 ~~~~~ 72 (257)
...+.
T Consensus 81 ~~~~~ 85 (157)
T PF01210_consen 81 AHREV 85 (157)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 77554
No 72
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.49 E-value=3.5e-12 Score=106.30 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=131.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
|||+|||+|+||.+++..|.+++ .++++++|++++. +.....++.++++++|+||+|||+...... .+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i 77 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEI 77 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHH
Confidence 79999999999999999999987 2599999987652 344566888888999999999997765444 11
Q ss_pred Hh--cCCcEEe-----------------------ccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeC
Q 025163 75 TS--KGGHFLE-----------------------APVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLG 127 (257)
Q Consensus 75 ~~--~g~~~~~-----------------------~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g 127 (257)
.. .+-.+++ .|. .+.....+...+..+ .+++..+.++++|+.+|. ++.+.
T Consensus 78 ~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v~ 154 (260)
T PTZ00431 78 KPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGI-IQEIK 154 (260)
T ss_pred HhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCc-EEEEC
Confidence 10 0001111 111 122223333222222 145667899999999996 45554
Q ss_pred C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--CC-cccCCCCCCCcccch
Q 025163 128 E--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--GP-TMLQSNYAPAFPLKH 201 (257)
Q Consensus 128 ~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~~-~~~~~~~~~~~~~~~ 201 (257)
+ ......+--....+.+.++.++.++ +.+.|++.++..+++.... +...++... .+ .+.+.-.+|+-+
T Consensus 155 E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~--- 228 (260)
T PTZ00431 155 EKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGI--- 228 (260)
T ss_pred hHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChH---
Confidence 4 2222222222344555556666555 7889999999988877541 222222211 11 122222334322
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 202 QQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 202 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
....++..++.|+.--+.+++....+++.+.
T Consensus 229 ----T~~gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 229 ----TIVGLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred ----HHHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 1335666777888888888888777776553
No 73
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.48 E-value=3.1e-12 Score=107.39 Aligned_cols=224 Identities=17% Similarity=0.196 Sum_probs=146.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 56 (257)
+||+|||+|.||..+|..++..|++|+++|++++.+++.. +.| ++..+++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 5899999999999999999998899999999977654432 222 23344444 6789
Q ss_pred CceEEEccCChHHHHH-----------------------------HHHhcCCcEEeccccCCccccccCcEEEEecC---
Q 025163 57 CTITIGMLADPAAALS-----------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAG--- 104 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~-----------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--- 104 (257)
||+||-+++....++. ....+.-.++..+.+.++.-- .++-++.|
T Consensus 83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m---~LVEvI~g~~T 159 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLM---PLVEVIRGEKT 159 (307)
T ss_pred CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcc---eeEEEecCCCC
Confidence 9999999999888776 111222335555545444322 34445555
Q ss_pred ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhcc
Q 025163 105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGK 184 (257)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~ 184 (257)
+++.++.+.++.+.+++.++...+ -.+....- +....+.|+..+..+...+++++..+++.+.+.. .
T Consensus 160 ~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~NR-------il~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p-----m 226 (307)
T COG1250 160 SDETVERVVEFAKKIGKTPVVVKD-VPGFIVNR-------LLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP-----M 226 (307)
T ss_pred CHHHHHHHHHHHHHcCCCCEeecC-CCceehHh-------HHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC-----c
Confidence 578899999999999976644444 44444322 3346677999999998899999999999865553 1
Q ss_pred CCcccCCCCCCCcccchHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHcCCCCCcHHH
Q 025163 185 GPTMLQSNYAPAFPLKHQQKDMRLALALGD--ENAVSMPIAAAANEAFKKARSLGLGDNDFSA 245 (257)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~--~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~ 245 (257)
+|..+ .|+.+ ++.+++-++.+.+... ..-.+.|+++...+.-+.+.+.|.|..||..
T Consensus 227 Gpf~l-~D~~G---lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 227 GPFEL-ADLIG---LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred cHHHH-HHHHh---HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 11111 12211 3334443344443222 1223457777777777777888888888874
No 74
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.48 E-value=4.4e-12 Score=107.88 Aligned_cols=165 Identities=22% Similarity=0.224 Sum_probs=107.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHH---HHh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSA---ITS 76 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~---~~~ 76 (257)
++|+|||+|+||.++|.+|.+.|++|++++++.++.. ...+.|.... ++.++++.+|+|+++||+....... +.+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~ 96 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEP 96 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999888755443 3345577655 8999999999999999987663321 111
Q ss_pred ---cCCcE----------Ee------------ccccCCcc-----ccccCcEEEE-ecCC--hhhHHHHHHHHHHhcCCe
Q 025163 77 ---KGGHF----------LE------------APVSGSKQ-----PAETGQLVIL-SAGE--KALYDEAISALNVIGKKA 123 (257)
Q Consensus 77 ---~g~~~----------~~------------~pv~~~~~-----~~~~~~~~~~-~~g~--~~~~~~~~~~l~~~~~~~ 123 (257)
.|..+ .. +|-..+.. ....|...++ +..| .+..+.+..+++.+|...
T Consensus 97 ~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~ 176 (330)
T PRK05479 97 NLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTR 176 (330)
T ss_pred cCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCc
Confidence 12111 11 12111110 0223333344 4555 778889999999999774
Q ss_pred E-----EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025163 124 F-----FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 167 (257)
Q Consensus 124 ~-----~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~ 167 (257)
. .+.+...--+..- +..+.+....++..++..+...|.+|+..
T Consensus 177 ~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 177 AGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred cceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3 2222110111111 44566677788888899999999998643
No 75
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.48 E-value=9.6e-13 Score=106.99 Aligned_cols=138 Identities=22% Similarity=0.346 Sum_probs=94.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------CCc---ccCCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|||...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 8999997 89999999999999999999999999988777542 221 23466788899999999999886
Q ss_pred HHHH--HHHh--cCCcEEe--ccccC--------------------------------C----------ccccccCcEEE
Q 025163 69 AALS--AITS--KGGHFLE--APVSG--------------------------------S----------KQPAETGQLVI 100 (257)
Q Consensus 69 ~~~~--~~~~--~g~~~~~--~pv~~--------------------------------~----------~~~~~~~~~~~ 100 (257)
..+. .+.. .+..+++ +|+.- . ......+.-.+
T Consensus 81 ~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~~~ 160 (219)
T TIGR01915 81 VLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCDVL 160 (219)
T ss_pred HHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCCEE
Confidence 6554 1111 1111222 11110 0 00011122234
Q ss_pred EecCChhhHHHHHHHHHHh-cCCeEEeCCCChHHHHHHH
Q 025163 101 LSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLV 138 (257)
Q Consensus 101 ~~~g~~~~~~~~~~~l~~~-~~~~~~~g~~g~a~~~kl~ 138 (257)
+.|.|+++.+.+.++.+.+ |..++.+|.+..+..+.-.
T Consensus 161 v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~ 199 (219)
T TIGR01915 161 VCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESL 199 (219)
T ss_pred EECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhH
Confidence 5555677788899999999 9999999987776665543
No 76
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.47 E-value=8.1e-12 Score=104.31 Aligned_cols=143 Identities=21% Similarity=0.272 Sum_probs=103.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCcc--cCCH-HHHhhcCceEEEccCChHHHHH---
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATV--GGSP-AEVIKKCTITIGMLADPAAALS--- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~--~~~~-~~~~~~~dvii~~v~~~~~~~~--- 72 (257)
|+|+|+|+|.||..+++.|.++|+.|.+++++.+ ..+.-.+.|+.- ..+. .+....+|+||+|||-....+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~ 83 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLKE 83 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHHH
Confidence 6899999999999999999999999877766554 444444455532 2333 5677789999999998776655
Q ss_pred -----------------------HHHhcC---CcEEe-ccccCC--ccccccCcEEEEecC---ChhhHHHHHHHHHHhc
Q 025163 73 -----------------------AITSKG---GHFLE-APVSGS--KQPAETGQLVILSAG---EKALYDEAISALNVIG 120 (257)
Q Consensus 73 -----------------------~~~~~g---~~~~~-~pv~~~--~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~ 120 (257)
.+.... ..|+. .|++|+ ......++..++... +.+.++++.++++.+|
T Consensus 84 l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~g 163 (279)
T COG0287 84 LAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALG 163 (279)
T ss_pred hcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 222222 25666 788888 556666666565544 3567889999999999
Q ss_pred CCeEEeCCCChHHHHHHHHHHHH
Q 025163 121 KKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 121 ~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
.+++++....+-..+-.++.+.-
T Consensus 164 a~~v~~~~eeHD~~~a~vshLpH 186 (279)
T COG0287 164 ARLVEMDAEEHDRVMAAVSHLPH 186 (279)
T ss_pred CEEEEcChHHHhHHHHHHHHHHH
Confidence 99988888777777766665543
No 77
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.46 E-value=4.2e-12 Score=108.35 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCchh-------HHH-----------HHHCC-------------CcccCC--HHHHhhcC
Q 025163 11 MGKAISMNLLRNGFKVTVWNRTLSK-------CDE-----------LVAHG-------------ATVGGS--PAEVIKKC 57 (257)
Q Consensus 11 mG~~la~~L~~~g~~V~~~~r~~~~-------~~~-----------l~~~g-------------~~~~~~--~~~~~~~~ 57 (257)
||..||..++.+|++|++||++++. +++ +.+.| ++...+ +.++++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999853 111 12222 233333 66888999
Q ss_pred ceEEEccCChHHHHH--------------------------HHHh---cCCcEEeccccCCccccccCcEEEEe---cCC
Q 025163 58 TITIGMLADPAAALS--------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILS---AGE 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~---~g~ 105 (257)
|+||.|||.+...+. .+.. +.-.++..+.+.++... .++-++ +++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~---~lvEVv~g~~t~ 157 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM---PLVEVSPSDATD 157 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccC---ceEEEeCCCCCC
Confidence 999999999988877 1111 00012222222222111 222233 347
Q ss_pred hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccC
Q 025163 106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG 185 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~ 185 (257)
++.++++.++++.+|+.++++++.+ + +.+..++...++|++.++++.+++++++.+++..+.+..+.. .+
T Consensus 158 ~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~--~G 227 (314)
T PRK08269 158 PAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAV--LG 227 (314)
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccC--cC
Confidence 8999999999999999999998844 3 235566778999999999999999999999998765543211 00
Q ss_pred CcccCCCCCCCcccchHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHcCCCCCcHH
Q 025163 186 PTMLQSNYAPAFPLKHQQKDMRLALALGDE-NAVSMPIAAAANEAFKKARSLGLGDNDFS 244 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~~~~~g~~~~d~~ 244 (257)
+.- --|. ..++....-...+.+...+ .--|.|++...++.-+.+.+.|.|..||.
T Consensus 228 pf~-~~D~---~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~ 283 (314)
T PRK08269 228 LLE-FIDW---GGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYA 283 (314)
T ss_pred HHH-HHHh---hhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCC
Confidence 100 0011 1122222222222221111 22345666665555555777788888884
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.45 E-value=2.8e-13 Score=95.61 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=61.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCC---CeEEEE-cCCchhHHHHHHC-CCcccC-CHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g---~~V~~~-~r~~~~~~~l~~~-g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
||+|||+|+||.+|++.|.++| ++|.++ +|++++.+++.++ +..... +..|+++.+|+||+|||+....+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHH
Confidence 7999999999999999999999 999955 9999999998665 666666 899999999999999998877664
No 79
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.44 E-value=2.5e-11 Score=101.36 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=91.9
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCchhH-----HHHHHCCCcccCCHHHHhh
Q 025163 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK 55 (257)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~ 55 (257)
|||.|.|+|+- |.+||.+|+++||+|++||||+++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 89999999974 8899999999999999999987655 4588889999999999999
Q ss_pred cCceEEEccCChHHHHH----------------------------H------HHhcCCcEEeccccCCccccccCcEEEE
Q 025163 56 KCTITIGMLADPAAALS----------------------------A------ITSKGGHFLEAPVSGSKQPAETGQLVIL 101 (257)
Q Consensus 56 ~~dvii~~v~~~~~~~~----------------------------~------~~~~g~~~~~~pv~~~~~~~~~~~~~~~ 101 (257)
++|+||+|+|++..++. . +..+.+...+.+-.+-|....++. .++
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~-~~~ 159 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGH-YVI 159 (341)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCce-eee
Confidence 99999999999987754 1 111223332222111122222222 233
Q ss_pred ec--------CChhhHHHHHHHHHHhcCCeEEeCC
Q 025163 102 SA--------GEKALYDEAISALNVIGKKAFFLGE 128 (257)
Q Consensus 102 ~~--------g~~~~~~~~~~~l~~~~~~~~~~g~ 128 (257)
.+ .+++..+++-++.+..++.+|.+..
T Consensus 160 ~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa 194 (341)
T TIGR01724 160 GGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA 194 (341)
T ss_pred ccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 32 2678888999999999988776654
No 80
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=3.5e-12 Score=105.06 Aligned_cols=242 Identities=14% Similarity=0.128 Sum_probs=163.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhcCce
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI 59 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~~~~dv 59 (257)
+||+.||+|++|.+....++-+- .+|+++|.+..++..++.. +....++++.+++.+|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 58999999999999988887543 4799999999887776542 23456789999999999
Q ss_pred EEEccCChHHHHH---------------------------------------------HH--HhcCCc--EEeccccCCc
Q 025163 60 TIGMLADPAAALS---------------------------------------------AI--TSKGGH--FLEAPVSGSK 90 (257)
Q Consensus 60 ii~~v~~~~~~~~---------------------------------------------~~--~~~g~~--~~~~pv~~~~ 90 (257)
||+.|.++.-... .+ ...|+. .++.|.+-..
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 9999876543322 11 123433 4556654332
Q ss_pred cccccC---cEEEEecCC--hhh---HHHHHHHHHHhcCC-eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025163 91 QPAETG---QLVILSAGE--KAL---YDEAISALNVIGKK-AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 161 (257)
Q Consensus 91 ~~~~~~---~~~~~~~g~--~~~---~~~~~~~l~~~~~~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g 161 (257)
..+... .=.+++||+ ++- .+.+..+++..-.+ -+...+..++++-|++.|.+.+--+..++-+.++|++.|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 222211 113667764 333 34455556655433 234455799999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHcCCC
Q 025163 162 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFKKARSLGLG 239 (257)
Q Consensus 162 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~~~~~~g~~ 239 (257)
.|...+..+++..+...+-+ ...+.||..++++||+-.++..|+..++| ..+.+.+.++-.-. ++++.
T Consensus 242 adv~eva~avg~d~rig~kf---------l~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyq-krrfa 311 (481)
T KOG2666|consen 242 ADVSEVAYAVGTDSRIGSKF---------LNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQ-KRRFA 311 (481)
T ss_pred CCHHHHHHHhcccccccHHH---------hhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHH-HHHHH
Confidence 99999998888654332222 12356899999999999999999998876 33344444333322 23344
Q ss_pred CCcHHHHHHHHHh
Q 025163 240 DNDFSAVFEVVKD 252 (257)
Q Consensus 240 ~~d~~~l~~~~~~ 252 (257)
+.=.+++++.+++
T Consensus 312 ~rii~smFNTVsd 324 (481)
T KOG2666|consen 312 NRIISSMFNTVSD 324 (481)
T ss_pred HHHHHHHhhcccc
Confidence 4445555555443
No 81
>PLN02256 arogenate dehydrogenase
Probab=99.43 E-value=9.3e-12 Score=105.65 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=96.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|||.....+.
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~ 115 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQ 115 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhh
Confidence 6899999999999999999999999999999864 3444556877777888876 479999999997755443
Q ss_pred --------------------HHHh---cCCcEEe-ccccCCccc--cccCcEEEEe-------cCChhhHHHHHHHHHHh
Q 025163 73 --------------------AITS---KGGHFLE-APVSGSKQP--AETGQLVILS-------AGEKALYDEAISALNVI 119 (257)
Q Consensus 73 --------------------~~~~---~g~~~~~-~pv~~~~~~--~~~~~~~~~~-------~g~~~~~~~~~~~l~~~ 119 (257)
.+.. .+..|+. .|++|.... ...+.-.++. ..+++..+.++++++.+
T Consensus 116 ~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~l 195 (304)
T PLN02256 116 RLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEE 195 (304)
T ss_pred ccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHC
Confidence 1111 1234444 666665432 1222222222 12567888999999999
Q ss_pred cCCeEEeCCCChHHHHHHHHH
Q 025163 120 GKKAFFLGEVGNGAKMKLVVN 140 (257)
Q Consensus 120 ~~~~~~~g~~g~a~~~kl~~n 140 (257)
|.+++.+....+-..+-.++.
T Consensus 196 Ga~v~~~~~eeHD~~vA~iSh 216 (304)
T PLN02256 196 GCRMVEMSCEEHDRYAAGSQF 216 (304)
T ss_pred CCEEEEeCHHHHhHHHHhhhh
Confidence 999988887666655554443
No 82
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=3.8e-12 Score=118.40 Aligned_cols=134 Identities=12% Similarity=0.200 Sum_probs=95.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||+|.||..+|+.|.+.|++|.+|||+... +...+.|+....++++++. .+|+||+|||.....+.
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~ 448 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQ 448 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHh
Confidence 78999999999999999999999999999998653 5555678777778888775 58999999997655443
Q ss_pred -----------------------HHHhcCCcEE-eccccCCccccccC--cEE-----EEecCChhhH---HHHHHHHHH
Q 025163 73 -----------------------AITSKGGHFL-EAPVSGSKQPAETG--QLV-----ILSAGEKALY---DEAISALNV 118 (257)
Q Consensus 73 -----------------------~~~~~g~~~~-~~pv~~~~~~~~~~--~~~-----~~~~g~~~~~---~~~~~~l~~ 118 (257)
.....+..|+ .+|++|+... ..| ... .+++++.+.. +.+.++++.
T Consensus 449 ~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~ 527 (667)
T PLN02712 449 RLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAR 527 (667)
T ss_pred cCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHH
Confidence 1112355677 6888887654 111 111 2334554444 455689999
Q ss_pred hcCCeEEeCCCChHHHHH
Q 025163 119 IGKKAFFLGEVGNGAKMK 136 (257)
Q Consensus 119 ~~~~~~~~g~~g~a~~~k 136 (257)
+|.+++.+....+-..+-
T Consensus 528 lGa~vv~ms~eeHD~~~A 545 (667)
T PLN02712 528 EGCRMVEMSCAEHDWHAA 545 (667)
T ss_pred cCCEEEEeCHHHHHHHHH
Confidence 999988887755554333
No 83
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.42 E-value=8.7e-12 Score=104.89 Aligned_cols=168 Identities=15% Similarity=0.284 Sum_probs=104.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCc-hhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH-
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~- 72 (257)
|||+|||+|+||.+++..|.++| ++|.+|+|++ ++.+.+... +.....+..++++++|+||+|||.....+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 68999999999999999999998 7899999864 445555543 345567888888999999999997655543
Q ss_pred -HHH---hcCCcEEe----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeE
Q 025163 73 -AIT---SKGGHFLE----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAF 124 (257)
Q Consensus 73 -~~~---~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~ 124 (257)
.+. ..+..+++ +|.. +.....|...+..+. +++..+.++.+|+.+|. ++
T Consensus 82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~ 158 (277)
T PRK06928 82 KDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VM 158 (277)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EE
Confidence 111 12323332 1111 112233333232222 45567789999999995 44
Q ss_pred EeCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhc
Q 025163 125 FLGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLDLG 174 (257)
Q Consensus 125 ~~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~-g~~~~~~~~~~~~~ 174 (257)
.+.+ ......+-=....+.+.++.++.++ +.+. |++++...+++...
T Consensus 159 ~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 159 TIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred EEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHH
Confidence 5443 2111111112233444555555555 5666 79999888877753
No 84
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.40 E-value=1.5e-11 Score=104.23 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhcCceEEEccCChHHHHH---
Q 025163 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALS--- 72 (257)
Q Consensus 10 ~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvii~~v~~~~~~~~--- 72 (257)
.||+.+|..|.++||+|++++|+ ++.+.+++.|... .+++++ ....|+||+|||..+....
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~ 78 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEEAAAL 78 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHHHHHH
Confidence 48999999999999999999997 7788888766321 223344 5689999999998876554
Q ss_pred ----------------------HHHhc-C-------CcEEeccccCCccccccCcEEEEecC-C--hhhHHHHHHHHHHh
Q 025163 73 ----------------------AITSK-G-------GHFLEAPVSGSKQPAETGQLVILSAG-E--KALYDEAISALNVI 119 (257)
Q Consensus 73 ----------------------~~~~~-g-------~~~~~~pv~~~~~~~~~~~~~~~~~g-~--~~~~~~~~~~l~~~ 119 (257)
.+... + +.+..+-..++......+.-.+.+|. + .+..+.+.++|+..
T Consensus 79 l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~ 158 (293)
T TIGR00745 79 LLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEA 158 (293)
T ss_pred hHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhC
Confidence 11111 0 11111111111111111111123332 1 24456788888888
Q ss_pred cCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC--HHHHHHHHhhc--
Q 025163 120 GKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLD--PRTLLDVLDLG-- 174 (257)
Q Consensus 120 ~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~--~~~~~~~~~~~-- 174 (257)
+.++....++....|.|++.|...+. +...+.|+..++++.|++ .+.+.+.+...
T Consensus 159 ~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~ 238 (293)
T TIGR00745 159 GIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVRAVIR 238 (293)
T ss_pred CCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 88887888899999999998875442 245789999999999875 33344433321
Q ss_pred --C-CCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163 175 --G-IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 233 (257)
Q Consensus 175 --~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 233 (257)
. ..+++.. |+..+... +.-.=.+.+++.++++|+++|..+.++++++..
T Consensus 239 ~~~~~~sSm~~---------D~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 239 MTAENTSSMLQ---------DLLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred cCCCCCChHHH---------HHHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 0 1111111 11111100 011112678999999999999999999988754
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.40 E-value=1.7e-11 Score=115.13 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=111.6
Q ss_pred eEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHH-----------HC-------------CCcccCCHHHHhhc
Q 025163 2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIKK 56 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~-----------~~-------------g~~~~~~~~~~~~~ 56 (257)
||+|||+|.||..+|..++ .+|++|+++|++++.+++.. +. .++.++++ +.+++
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 384 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKD 384 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhcc
Confidence 7999999999999999998 58999999999988654431 11 23455666 46789
Q ss_pred CceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---
Q 025163 57 CTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG--- 104 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--- 104 (257)
+|+||-|+|.....+. .+. .+.-.++..+.+.++... .++-++.+
T Consensus 385 adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~---~lVEvv~g~~T 461 (699)
T TIGR02440 385 VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKM---PLVEVIPHAGT 461 (699)
T ss_pred CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccC---ceEEEeCCCCC
Confidence 9999999999887776 111 122234444444333222 33444443
Q ss_pred ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
++++++.+.++++.+|+.++.+.+ ..+.... -+....+.|+..+.+ .|++++++..++.
T Consensus 462 ~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~n-------Rl~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 462 SEQTIATTVALAKKQGKTPIVVAD-KAGFYVN-------RILAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEcc-ccchHHH-------HHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 678899999999999999998866 3444432 234467779988887 5679999998885
No 86
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.40 E-value=1.1e-11 Score=116.57 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=115.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..||..++.+|++|+++|++++.+++.. +.| ++.+++. +.++++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV 393 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 799999999999999999999999999999988765421 122 3445666 456899
Q ss_pred ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163 58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~ 105 (257)
|+||-|+|..-..+. .+. .+.-.++..+.+.++... .++-++.+ +
T Consensus 394 DlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~---~lVEvv~g~~T~ 470 (715)
T PRK11730 394 DVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM---PLVEVIRGEKTS 470 (715)
T ss_pred CEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCccccc---ceEEeeCCCCCC
Confidence 999999999887776 111 122234444444333322 23334433 6
Q ss_pred hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163 106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 176 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~ 176 (257)
++.++.+.++++.+|+.++.+.+ ..+....-+ ....++|++.+.++. .+++++..++..+.+
T Consensus 471 ~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~nRi-------~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G 532 (715)
T PRK11730 471 DETIATVVAYASKMGKTPIVVND-CPGFFVNRV-------LFPYFAGFSQLLRDG-ADFRQIDKVMEKQFG 532 (715)
T ss_pred HHHHHHHHHHHHHhCCceEEecC-cCchhHHHH-------HHHHHHHHHHHHHcC-CCHHHHHHHHHhhCC
Confidence 88899999999999999988865 445443332 334567998888765 999999999876544
No 87
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.38 E-value=6.7e-12 Score=98.79 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=96.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC-chhHHHHHHC-CC-cccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT-LSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~-~~~~~~l~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~ 75 (257)
|+|+|+|+|+||.++|.+|++.||+|++-+|+ +++.+...+. +. ....++.++++.+|+||++||....... .+.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 68999999999999999999999999998555 4455544432 32 2345788999999999999998776655 122
Q ss_pred --hcCCcEEecccc----CCcc--------------------------------------cccc-CcEE-EEecCChhhH
Q 025163 76 --SKGGHFLEAPVS----GSKQ--------------------------------------PAET-GQLV-ILSAGEKALY 109 (257)
Q Consensus 76 --~~g~~~~~~pv~----~~~~--------------------------------------~~~~-~~~~-~~~~g~~~~~ 109 (257)
..|-..+|..+. +.+. .... ++.. +++|.|.++.
T Consensus 82 ~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak 161 (211)
T COG2085 82 DALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAK 161 (211)
T ss_pred HHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHHHH
Confidence 113444442221 1000 1111 2333 4555677899
Q ss_pred HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHH
Q 025163 110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNM 141 (257)
Q Consensus 110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~ 141 (257)
+.+.++.+.+|...+.+|++..+..+.-+.-.
T Consensus 162 ~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l 193 (211)
T COG2085 162 AVVAELAEDIGFRPLDAGPLENARILEPGTPL 193 (211)
T ss_pred HHHHHHHHhcCcceeecccccccccccccchH
Confidence 99999999999999999997777665544333
No 88
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.38 E-value=1.7e-11 Score=115.15 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=115.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..||..++.+|++|+++|++++.+++..+ .| ++.+++. +.++++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNV 393 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 7999999999999999999999999999999987654321 12 3445566 456899
Q ss_pred ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163 58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~ 105 (257)
|+||-+|+.....+. .+. .+.-.++..+.+.++... .++-++.+ +
T Consensus 394 DlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~---~lvEvv~g~~Ts 470 (714)
T TIGR02437 394 DIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM---PLVEVIRGEKSS 470 (714)
T ss_pred CEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccC---ceEeecCCCCCC
Confidence 999999999888776 111 122234444444333322 33444444 5
Q ss_pred hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163 106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 176 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~ 176 (257)
+++++.+.++++.+|+.++.+.+ ..+....- +....+.|+..+.+. |.+++++..++..+.+
T Consensus 471 ~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~NR-------l~~~~~~ea~~l~~e-G~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 471 DETIATVVAYASKMGKTPIVVND-CPGFFVNR-------VLFPYFGGFSKLLRD-GADFVRIDKVMEKQFG 532 (714)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCC-cccchHHH-------HHHHHHHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence 78899999999999999988876 44444332 234567799988865 5999999999876544
No 89
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.35 E-value=4.4e-11 Score=112.60 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=112.8
Q ss_pred eEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhc
Q 025163 2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK 56 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 56 (257)
||+|||+|.||..||..++ .+|++|+++|++++.+++.. +.| ++.+++. +.+++
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 389 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKH 389 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhcc
Confidence 7999999999999999999 88999999999988654421 112 3445566 56789
Q ss_pred CceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---
Q 025163 57 CTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG--- 104 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--- 104 (257)
+|+||-|+|.....+. .+. .+.-.++..+.+.++... .++-++.+
T Consensus 390 aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~---~lVEvv~g~~T 466 (708)
T PRK11154 390 ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKM---PLVEVIPHAKT 466 (708)
T ss_pred CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccC---ceEEEECCCCC
Confidence 9999999999877776 111 122345555544443322 23444443
Q ss_pred ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
+++..+.+..+++.+|+.++.+.+ ..+.... -+....++|+..+.++ |++++++..++.
T Consensus 467 s~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~n-------Rl~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 467 SAETIATTVALAKKQGKTPIVVRD-GAGFYVN-------RILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred CHHHHHHHHHHHHHcCCceEEEec-cCcHHHH-------HHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 678899999999999998888865 4444433 2345667799988876 789999988876
No 90
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.34 E-value=8e-11 Score=100.22 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=56.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
+||+|||+|+||.+++.+|.+.|++|+++++ ++++.+.+.+.|+.+. ++.++++++|+|+++||+...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH
Confidence 5899999999999999999999999877654 4456677777788654 688889999999999998733
No 91
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.34 E-value=7.1e-12 Score=98.59 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=81.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------C-------------CCcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~ 57 (257)
||+|||+|.||..+|..++.+|++|++||++++.++...+ . .+...++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 7999999999999999999999999999999987644322 1 245678898888 99
Q ss_pred ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEec---CC
Q 025163 58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSA---GE 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~---g~ 105 (257)
|+||-|+|.....+. .+. .+.-.++..+.+.++... .++-++. .+
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~---~lVEvv~~~~T~ 156 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM---PLVEVVPGPKTS 156 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT-----EEEEEE-TTS-
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC---ceEEEeCCCCCC
Confidence 999999999887776 111 011234444444333222 2233333 36
Q ss_pred hhhHHHHHHHHHHhcCCeEEeC
Q 025163 106 KALYDEAISALNVIGKKAFFLG 127 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g 127 (257)
++..+.+..+++.+|+.++.+.
T Consensus 157 ~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 157 PETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 8889999999999998877663
No 92
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.33 E-value=2.2e-12 Score=101.78 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=51.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvi 60 (257)
|||+|||+|++|..+|..|+++||+|+++|.|+++++.+++. .....++..++++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 999999999999999999999999999999999999888652 134567888889999999
Q ss_pred EEccCChHH
Q 025163 61 IGMLADPAA 69 (257)
Q Consensus 61 i~~v~~~~~ 69 (257)
|+|||++..
T Consensus 81 ~I~VpTP~~ 89 (185)
T PF03721_consen 81 FICVPTPSD 89 (185)
T ss_dssp EE----EBE
T ss_pred EEecCCCcc
Confidence 999997743
No 93
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.33 E-value=5e-11 Score=112.32 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=112.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (257)
+|+|||+|.||..||..++.+|++|+++|++++.+++..+ .| ++.+++.+ .++++
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 415 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA 415 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 6999999999999999999999999999999987655321 12 34456664 56899
Q ss_pred ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163 58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E 105 (257)
Q Consensus 58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~ 105 (257)
|+||-+|+.+..++. .+. .+.-.++..+.+.++... .++-++.+ +
T Consensus 416 DlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m---~LvEvv~g~~Ts 492 (737)
T TIGR02441 416 DMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM---QLLEIITHDGTS 492 (737)
T ss_pred CeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC---ceEEEeCCCCCC
Confidence 999999999888776 111 122234444444333222 33444443 6
Q ss_pred hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
+++++.+..+++.+|+.++.+.+ ..+....- +....+.|+..+.+. |++++++..++.
T Consensus 493 ~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~NR-------i~~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 493 KDTLASAVAVGLKQGKVVIVVKD-GPGFYTTR-------CLGPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred HHHHHHHHHHHHHCCCeEEEECC-cCCchHHH-------HHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 78899999999999999988876 44444332 334677799888755 679999998864
No 94
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.30 E-value=1.7e-11 Score=96.61 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=142.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC------------------CcccCCHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE 52 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~ 52 (257)
.++|||+|.||+.+|+.-+..|++|.++|+|++.+.+..+ .+ ++.+++..+
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~ 92 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD 92 (298)
T ss_pred ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5899999999999999999999999999999887665432 11 345678888
Q ss_pred HhhcCceEEEccCChHHHHH-----------------------HHH------h-----cCCcEEeccccCCccccccCcE
Q 025163 53 VIKKCTITIGMLADPAAALS-----------------------AIT------S-----KGGHFLEAPVSGSKQPAETGQL 98 (257)
Q Consensus 53 ~~~~~dvii~~v~~~~~~~~-----------------------~~~------~-----~g~~~~~~pv~~~~~~~~~~~~ 98 (257)
+++++|+||-++-.....+. .+. . .|.+|+. +++.- .+
T Consensus 93 ~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfN-----PvPvM---KL 164 (298)
T KOG2304|consen 93 AVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFN-----PVPVM---KL 164 (298)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccC-----CchhH---HH
Confidence 88889999877655544443 000 0 1333332 22111 11
Q ss_pred EEEecC---ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 025163 99 VILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 175 (257)
Q Consensus 99 ~~~~~g---~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~ 175 (257)
+-++.+ .++.+..+..+-+.+|+..+.+-+ -.+..+ ..+++-.+.|+++++++...+.+++...+..++
T Consensus 165 vEVir~~~TS~eTf~~l~~f~k~~gKttVackD-tpGFIV-------NRlLiPyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 165 VEVIRTDDTSDETFNALVDFGKAVGKTTVACKD-TPGFIV-------NRLLIPYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHhCCCceeecC-CCchhh-------hHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 222222 468888899999999998888877 333332 234466778999999999999999999999887
Q ss_pred CCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHH--hhcCCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163 176 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALG--DENAVSMPIAAAANEAFKKARSLGLGDNDF 243 (257)
Q Consensus 176 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~ 243 (257)
++. +- |.-+ .||- .++.+.--++-..+.- ...-.|.|+++..+.--+.+.+.|.|..+|
T Consensus 237 gyP-MG----PfEL-~Dyv---GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 237 GYP-MG----PFEL-ADYV---GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred CCC-CC----hHHH-HHHh---hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 662 11 1111 2222 1332322233333322 233478999998888777787788777665
No 95
>PLN02712 arogenate dehydrogenase
Probab=99.27 E-value=1.9e-10 Score=107.17 Aligned_cols=138 Identities=11% Similarity=0.139 Sum_probs=94.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....++.+++ +++|+||+|||.....+.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~ 131 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQ 131 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhh
Confidence 68999999999999999999999999999998544 455567887777888855 569999999997654443
Q ss_pred --------------------HHH---hcCCcEEe-ccccCCccc--cccCcEEEEe----cCCh---hhHHHHHHHHHHh
Q 025163 73 --------------------AIT---SKGGHFLE-APVSGSKQP--AETGQLVILS----AGEK---ALYDEAISALNVI 119 (257)
Q Consensus 73 --------------------~~~---~~g~~~~~-~pv~~~~~~--~~~~~~~~~~----~g~~---~~~~~~~~~l~~~ 119 (257)
.+. ..+..|+. .|++|+... ...+...++. +.+. +.++.++++++.+
T Consensus 132 ~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 211 (667)
T PLN02712 132 RLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFERE 211 (667)
T ss_pred cCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHc
Confidence 111 12344544 777776532 1122222222 2222 2356677999999
Q ss_pred cCCeEEeCCCChHHHHHHHH
Q 025163 120 GKKAFFLGEVGNGAKMKLVV 139 (257)
Q Consensus 120 ~~~~~~~g~~g~a~~~kl~~ 139 (257)
|.+++.+....+-..+-.++
T Consensus 212 Ga~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 212 GCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred CCEEEEeCHHHHHHHHHHHH
Confidence 99988887655554444443
No 96
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.27 E-value=6.6e-12 Score=92.42 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=53.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEE-EcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|||+|||+|++|..|+..|.++||+|.. |+|+++..+++... +.....++.|+++++|++|++||++...+.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence 6999999999999999999999999766 48988888877664 445556788899999999999999977665
No 97
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.23 E-value=5.5e-10 Score=96.82 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=95.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------ 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------ 72 (257)
++|+|||+ |.||..+|+.|.+. +++|+++|++.+ ...++.+.++++|+||+|||.....+.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~ 73 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVA 73 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 58999999 99999999999974 889999998521 234677888999999999998766544
Q ss_pred -----------------------HHHhcCCcEEe-ccccCCcc-ccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEe
Q 025163 73 -----------------------AITSKGGHFLE-APVSGSKQ-PAETGQLVILSAG-EKALYDEAISALNVIGKKAFFL 126 (257)
Q Consensus 73 -----------------------~~~~~g~~~~~-~pv~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~ 126 (257)
.....+..|+. .|++|+.. ...++...++..+ ..+..+.++++++.+|.+++.+
T Consensus 74 ~~~~l~~~~iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred hhcCCCCCeEEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence 11122345665 67887753 3345665555544 3444678899999999999888
Q ss_pred CCCChHHHHHHHHHH
Q 025163 127 GEVGNGAKMKLVVNM 141 (257)
Q Consensus 127 g~~g~a~~~kl~~n~ 141 (257)
....+-..+-.++.+
T Consensus 154 ~aeeHD~~~A~vS~L 168 (370)
T PRK08818 154 TPEHHDRVMALVQAM 168 (370)
T ss_pred CHHHHHHHHHHHHHH
Confidence 887777777776543
No 98
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.23 E-value=3.8e-10 Score=107.36 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=97.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALS---- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~---- 72 (257)
.||+|||+|.||.++++.|.++| ++|++|||++++++.+.+.|.. ...+..++++++|+||+|||.....+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l 83 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL 83 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 37999999999999999999998 4899999999998888887864 455778888999999999997644333
Q ss_pred ----------------------HHHh----cCCcEE-eccccCCcc--------ccccCcEEEEec---CChhhHHHHHH
Q 025163 73 ----------------------AITS----KGGHFL-EAPVSGSKQ--------PAETGQLVILSA---GEKALYDEAIS 114 (257)
Q Consensus 73 ----------------------~~~~----~g~~~~-~~pv~~~~~--------~~~~~~~~~~~~---g~~~~~~~~~~ 114 (257)
.+.. ..+.|+ ..|++|+.. ....+...++.. ++++.++.+++
T Consensus 84 ~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (735)
T PRK14806 84 KPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDR 163 (735)
T ss_pred HHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence 1111 123333 356554432 111222233332 46678889999
Q ss_pred HHHHhcCCeEEeCCCChHHHHHHHHH
Q 025163 115 ALNVIGKKAFFLGEVGNGAKMKLVVN 140 (257)
Q Consensus 115 ~l~~~~~~~~~~g~~g~a~~~kl~~n 140 (257)
+++.+|.+++++.+..+...+-++..
T Consensus 164 l~~~~G~~~~~~~~~~hD~~~a~~~~ 189 (735)
T PRK14806 164 LWRAVGADVLHMDVAHHDEVLAATSH 189 (735)
T ss_pred HHHHcCCEEEEcCHHHHhHHHHHhcc
Confidence 99999988888876544444444433
No 99
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.22 E-value=2e-09 Score=90.69 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=58.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
.+|+|||+|+||.++|++|...|++|++|+|.....+.....|..+. +++|+++.+|+|++++|++...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence 37999999999999999999999999999886555455555687654 8999999999999999986553
No 100
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.09 E-value=1.5e-09 Score=90.69 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=140.6
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CC-----eEEEEcCCch------hHHHHHH-C--------------CCcccCCHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLS------KCDELVA-H--------------GATVGGSPAEV 53 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~--g~-----~V~~~~r~~~------~~~~l~~-~--------------g~~~~~~~~~~ 53 (257)
||+|||.|+||+++|+.+.++ ++ +|..|-+..+ ++.+... . ++...+|+.++
T Consensus 23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea 102 (372)
T KOG2711|consen 23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA 102 (372)
T ss_pred EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence 799999999999999999865 22 6888855322 3322222 1 24567799999
Q ss_pred hhcCceEEEccCChHHHHH--HHH----------------------------------hc--CCcEEeccccCCcccccc
Q 025163 54 IKKCTITIGMLADPAAALS--AIT----------------------------------SK--GGHFLEAPVSGSKQPAET 95 (257)
Q Consensus 54 ~~~~dvii~~v~~~~~~~~--~~~----------------------------------~~--g~~~~~~pv~~~~~~~~~ 95 (257)
++++|+++..+|..-.... .+. .. .+.++.+|..+.......
T Consensus 103 ~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~ 182 (372)
T KOG2711|consen 103 AKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEK 182 (372)
T ss_pred hccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhcc
Confidence 9999999999998765544 000 01 122333333333222222
Q ss_pred CcEEEEecCChhhH-HHHHHHHHHhcCCeEEeCCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163 96 GQLVILSAGEKALY-DEAISALNVIGKKAFFLGEV-----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLA 157 (257)
Q Consensus 96 ~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~ 157 (257)
-.-..+.+.++... ..+.++|+.-.+.+..+.+. |-...+.+.+|+-.+++...+.|+..+.
T Consensus 183 f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~ 262 (372)
T KOG2711|consen 183 FCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFA 262 (372)
T ss_pred ccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHHHHHH
Confidence 11112222222222 23667776554444333221 4445566678888889999999999998
Q ss_pred HHc-CC-CHHHHHHHHhhc----CCCchhhhccCCcccCCC---------CCCCcccchHHHHHHHHHHHHhhcCC--Cc
Q 025163 158 EKS-GL-DPRTLLDVLDLG----GIANPMFKGKGPTMLQSN---------YAPAFPLKHQQKDMRLALALGDENAV--SM 220 (257)
Q Consensus 158 ~~~-g~-~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~---------~~~~~~~~~~~kd~~~~~~~a~~~g~--~~ 220 (257)
+.. +- .++++.+..... +++....+.....+..+. .-.+- .-......+.+.+++++.+. ..
T Consensus 263 ~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L~~~~l~~kf 341 (372)
T KOG2711|consen 263 THFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELLQKKGLVEKF 341 (372)
T ss_pred HHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHHHHcChhhhC
Confidence 874 22 444444332211 122222222212222111 00010 11123345788999999998 89
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163 221 PIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254 (257)
Q Consensus 221 p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~ 254 (257)
|++.+++++.. ++....+|++.++++.
T Consensus 342 PlftaVykI~~-------~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 342 PLFTAVYKICY-------ERLPPQALLECLRNHP 368 (372)
T ss_pred cHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence 99999998875 5568888999988754
No 101
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.04 E-value=2e-08 Score=79.73 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=80.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------- 72 (257)
|||+|||. |.||..++..|.++|++|+ ++++|+||+|+|.....+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~~~~~i~~~~~~ 54 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDAALNYIESYDNN 54 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHHHHHHHHHhCCe
Confidence 89999988 9999999999999999986 2588999999998876654
Q ss_pred ---------HHHhcCCcEEe-ccccCCccccccC--cEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH
Q 025163 73 ---------AITSKGGHFLE-APVSGSKQPAETG--QLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV 138 (257)
Q Consensus 73 ---------~~~~~g~~~~~-~pv~~~~~~~~~~--~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~ 138 (257)
.+......|+. .|++|+.. +..+ ...++.. .+++..+.++++++ |.+++.+....+-..+-.+
T Consensus 55 v~Dv~SvK~~i~~~~~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~i 131 (197)
T PRK06444 55 FVEISSVKWPFKKYSGKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEI 131 (197)
T ss_pred EEeccccCHHHHHhcCCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHH
Confidence 22233445666 77887433 3221 2223332 24556678889888 7788877776777666666
Q ss_pred HHHH
Q 025163 139 VNMI 142 (257)
Q Consensus 139 ~n~~ 142 (257)
+.+.
T Consensus 132 shLp 135 (197)
T PRK06444 132 MVKP 135 (197)
T ss_pred HHHH
Confidence 5543
No 102
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-08 Score=84.86 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=89.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVI-KKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~------- 72 (257)
+|+|||.|+||..+|..|.++||.|..++|+. ...+++ .|....+.+.+.+ +.+|+|++||........
T Consensus 54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfq 131 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQ 131 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCch
Confidence 69999999999999999999999999999965 444444 4777777787766 579999999986655443
Q ss_pred --------------------HH---HhcCCcEEe-ccccCCccccccCc-EEEEe----cC----ChhhHHHHHHHHHHh
Q 025163 73 --------------------AI---TSKGGHFLE-APVSGSKQPAETGQ-LVILS----AG----EKALYDEAISALNVI 119 (257)
Q Consensus 73 --------------------~~---~~~g~~~~~-~pv~~~~~~~~~~~-~~~~~----~g----~~~~~~~~~~~l~~~ 119 (257)
.+ .++.+..+. .|++|+.......+ ++++. .| .++.++.+.+++...
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~ce 211 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACE 211 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhc
Confidence 11 123444433 67777762222222 22222 23 378899999999999
Q ss_pred cCCeEEeCC
Q 025163 120 GKKAFFLGE 128 (257)
Q Consensus 120 ~~~~~~~g~ 128 (257)
+++.+++.-
T Consensus 212 gckmVemS~ 220 (480)
T KOG2380|consen 212 GCKMVEMSY 220 (480)
T ss_pred CCeEEEEEe
Confidence 999888754
No 103
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.93 E-value=2.3e-08 Score=70.04 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHH
Q 025163 130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209 (257)
Q Consensus 130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 209 (257)
..+++.|+..|.+.++.+++++|...+|++.|+|..++.++++.....++ ... ...+++...+..||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~--~pg~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYL--RPGPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS---S-SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccC--CCCCCCCCcchhhhHHHH
Confidence 56899999999999999999999999999999999999999997633321 111 112367889999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHH
Q 025163 210 LALGDENAVSMPIAAAANEAFK 231 (257)
Q Consensus 210 ~~~a~~~g~~~p~~~~~~~~~~ 231 (257)
...++++|.+.++++++.+.-+
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999999887654
No 104
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.91 E-value=6.4e-09 Score=78.76 Aligned_cols=71 Identities=30% Similarity=0.351 Sum_probs=56.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
.+|+|||.|+.|.+.|.+|.+.|.+|++..|..+ ..++..+.|..+. +..|+++.+|+|++.+|+....+.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v 76 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV 76 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence 3799999999999999999999999999988777 6777788887765 899999999999999998777665
No 105
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.89 E-value=1.5e-07 Score=75.32 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=90.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHh-hcCceEEEccCChHHHHHHHHhcC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSAITSKG 78 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~~~~~~g 78 (257)
|+|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. |....++ .++. .++|+++.|.......+..+..-+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~ 107 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIPQLK 107 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHHHcC
Confidence 579999999999999999999999999999999998888766 7665544 4444 489999977654433333333332
Q ss_pred CcEEeccccCCccccccCcEEEEecCChhhH-HHHHHHHHHhcCCeEEeCCCCh------HHHHHHHHH------HHHHH
Q 025163 79 GHFLEAPVSGSKQPAETGQLVILSAGEKALY-DEAISALNVIGKKAFFLGEVGN------GAKMKLVVN------MIMGC 145 (257)
Q Consensus 79 ~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~g~~g~------a~~~kl~~n------~~~~~ 145 (257)
..+ ++-+++.... .+..++|+.-|.. ++.+... .....+..| -....
T Consensus 108 ~~~------------------v~~~AN~~~~~~~~~~~L~~~Gi~--~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~ 167 (200)
T cd01075 108 AKA------------------IAGAANNQLADPRHGQMLHERGIL--YAPDYVVNAGGLINVADELYGGNEARVLAKVEA 167 (200)
T ss_pred CCE------------------EEECCcCccCCHhHHHHHHHCCCE--EeCceeeeCcCceeehhHHhCCcHHHHHHHHHH
Confidence 221 2222222222 3456666665532 2221000 011111111 11122
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163 146 MMNTFSEGLVLAEKSGLDPRTLLDVL 171 (257)
Q Consensus 146 ~~~~~~E~~~l~~~~g~~~~~~~~~~ 171 (257)
....+.+.+..+++.|+++......+
T Consensus 168 ~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 168 IYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 25677778888888888877665444
No 106
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.89 E-value=1.2e-08 Score=74.80 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=80.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+|.+|......+.+. +.+| .++|+++++.+.+.+ .|....+|.+++++ +.|+|++|+|+....+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 6999999999999999999887 3454 578999999988754 58889999999987 78999999999888776
Q ss_pred HHHhcCCc-EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163 73 AITSKGGH-FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK 122 (257)
Q Consensus 73 ~~~~~g~~-~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 122 (257)
.....|.+ +++-|+.. +.+..+++.+..+.-+..
T Consensus 81 ~~l~~g~~v~~EKP~~~----------------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 81 KALEAGKHVLVEKPLAL----------------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHTTSEEEEESSSSS----------------SHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCEEEEEcCCcC----------------CHHHHHHHHHHHHHhCCE
Confidence 45556665 56666542 344445666666665544
No 107
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.87 E-value=6.2e-08 Score=80.71 Aligned_cols=134 Identities=14% Similarity=0.201 Sum_probs=92.4
Q ss_pred HHHHHHHCC--CeEEEEcCCchhHHHHHHCCCcccC-CHHHHhhcCceEEEccCChHHHHH-------------------
Q 025163 15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS------------------- 72 (257)
Q Consensus 15 la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~------------------- 72 (257)
+|+.|.++| ++|++||++++.++...+.|+.-.. +..+.++++|+||+|||.....+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC
Confidence 588899999 6899999999999888888865322 226788999999999998776655
Q ss_pred ----------HHHhcCCcEEe-ccccCC--------ccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEEeCCCC
Q 025163 73 ----------AITSKGGHFLE-APVSGS--------KQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVG 130 (257)
Q Consensus 73 ----------~~~~~g~~~~~-~pv~~~--------~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~~g~~g 130 (257)
.....+..|+. .|++|+ ......+...+++.. +++.++.++++++.+|.+++.+....
T Consensus 81 vK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ee 160 (258)
T PF02153_consen 81 VKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEE 160 (258)
T ss_dssp -CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHH
T ss_pred CCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHH
Confidence 22223567776 778877 345556666666643 45788999999999999988887677
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025163 131 NGAKMKLVVNMIMGCMMN 148 (257)
Q Consensus 131 ~a~~~kl~~n~~~~~~~~ 148 (257)
+-..+-+++.+.-.+...
T Consensus 161 HD~~~A~vshlpH~~a~a 178 (258)
T PF02153_consen 161 HDRIMAYVSHLPHLLASA 178 (258)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776654443333
No 108
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.86 E-value=1e-08 Score=88.22 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=57.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|+|||||+|.||..+|+.|...|++|.+|||+++..... .....+++++++++|+|++|+|.......
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 689999999999999999999999999999987654322 23456899999999999999998876544
No 109
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.86 E-value=5.4e-08 Score=81.52 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=65.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~--g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~--~ 73 (257)
|||||||+|.||..++..|.+. ++++. +|||++++.+.+.+. |. ...++++++++++|+|++|+|+....+. .
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~ 86 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIVEP 86 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHHHHH
Confidence 5899999999999999999874 67765 789999998877654 53 5678899999999999999998877554 3
Q ss_pred HHhcCCcEE
Q 025163 74 ITSKGGHFL 82 (257)
Q Consensus 74 ~~~~g~~~~ 82 (257)
....|.+++
T Consensus 87 aL~aGk~Vi 95 (271)
T PRK13302 87 VLAAGKKAI 95 (271)
T ss_pred HHHcCCcEE
Confidence 334555543
No 110
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.85 E-value=6e-08 Score=81.07 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=63.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
|||+|||+|.||..++..|.+. +++ +.++||++++.+.+.+. +.....++++++.++|+|++|+|.....+. ..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~a 81 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPKS 81 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHH
Confidence 7999999999999999999876 355 66789999998887653 667778999988899999999987766544 22
Q ss_pred HhcCCcE
Q 025163 75 TSKGGHF 81 (257)
Q Consensus 75 ~~~g~~~ 81 (257)
...|.++
T Consensus 82 l~~Gk~V 88 (265)
T PRK13304 82 LENGKDV 88 (265)
T ss_pred HHcCCCE
Confidence 3345444
No 111
>PRK07574 formate dehydrogenase; Provisional
Probab=98.83 E-value=1.6e-08 Score=88.26 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=61.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|+|||||+|.||..+|++|...|.+|.+|||+....+...+.|+....+++|+++.||+|++++|.....+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 589999999999999999999999999999986444444455776667899999999999999998877665
No 112
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.83 E-value=1.8e-07 Score=77.30 Aligned_cols=198 Identities=14% Similarity=0.171 Sum_probs=115.3
Q ss_pred CCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HHH---hcCCcEEe-------------
Q 025163 23 GFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AIT---SKGGHFLE------------- 83 (257)
Q Consensus 23 g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~---~~g~~~~~------------- 83 (257)
.++|++|+|++++.+.+.+. |+....+..++++++|+||+|||+....+. .+. ..+-.+++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~ 88 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQL 88 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHH
Confidence 47899999999999888664 888888999999999999999995544332 111 11112222
Q ss_pred ----------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHHHHHHHHHHHHH
Q 025163 84 ----------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLVVNMIMGCMMNT 149 (257)
Q Consensus 84 ----------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~~n~~~~~~~~~ 149 (257)
+|. .+...+.+...+..+. +++..+.++++|+.+|. ++.+.+ ......+--....+.+.++..
T Consensus 89 ~~~~~~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~~~~~~~a 165 (245)
T TIGR00112 89 LGGTRRVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAYVFLFIEA 165 (245)
T ss_pred cCCCCeEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHHHHHHHHH
Confidence 111 1112223333333332 34556789999999995 455654 333333333445555556666
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--C-CcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHH
Q 025163 150 FSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--G-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAA 225 (257)
Q Consensus 150 ~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~-~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 225 (257)
+.++ +.+.|++++...+++.... +...+.... . ..+.+.-.+|+-+ ....++..++.|+.--+.++
T Consensus 166 l~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGt-------T~~gl~~Le~~~~~~~~~~a 235 (245)
T TIGR00112 166 LADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGT-------TIAGLAVLEEKGVRGAVIEA 235 (245)
T ss_pred HHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHH-------HHHHHHHHHHCChHHHHHHH
Confidence 6665 7788999999998887542 222222111 0 1111222233221 23356666777777666666
Q ss_pred HHHHHHHH
Q 025163 226 ANEAFKKA 233 (257)
Q Consensus 226 ~~~~~~~~ 233 (257)
+...++++
T Consensus 236 ~~aa~~r~ 243 (245)
T TIGR00112 236 VEAAVRRS 243 (245)
T ss_pred HHHHHHHh
Confidence 66666554
No 113
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.81 E-value=1.3e-08 Score=77.98 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=57.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CC----cccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
++|+|||+|.||..++..|.+.| ++|++++|++++.+.+.+. +. ....+..++++++|+||.|+|....
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 47999999999999999999986 7899999999988877654 32 2345777778899999999998754
No 114
>PLN03139 formate dehydrogenase; Provisional
Probab=98.80 E-value=2.4e-08 Score=87.21 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=62.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++|||||+|+||..+|+.|..-|.+|.+|||+....+...+.|+....+++|+++++|+|++++|.....+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG 271 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence 479999999999999999999999999999986554545556777777999999999999999998877665
No 115
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.74 E-value=2.2e-08 Score=76.45 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=56.0
Q ss_pred EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC--------------CHHHHhhcCceEEEccCChH
Q 025163 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~~dvii~~v~~~~ 68 (257)
|+|+|+|.||..+|..|.+.|++|+++.|.+ +.+.+++.|+.... +..+..+..|+||+||+..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999999999999999988 88888887653322 12235578999999999988
Q ss_pred HHHH
Q 025163 69 AALS 72 (257)
Q Consensus 69 ~~~~ 72 (257)
....
T Consensus 80 ~~~~ 83 (151)
T PF02558_consen 80 LEQA 83 (151)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7665
No 116
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.74 E-value=4.6e-08 Score=76.90 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=55.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
.+|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++|+++.+|+|++++|....
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~ 104 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE 104 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc
Confidence 37999999999999999999999999999999887665666666 445999999999999999996543
No 117
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.70 E-value=7.2e-08 Score=83.17 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=57.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++|||||+|.||..+|+.|...|++|.+|||++... .....|... .+++++++++|+|++|+|.......
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYH 220 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhh
Confidence 479999999999999999999999999999986543 223345543 4899999999999999998776554
No 118
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.66 E-value=2.8e-07 Score=73.14 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=113.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC--------------CcccCCHHHHhhc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG--------------ATVGGSPAEVIKK 56 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g--------------~~~~~~~~~~~~~ 56 (257)
||+|+|.|.+|..+|..|++.|++|.+||+.++.+... -+.| +..++++.|++++
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~ 84 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG 84 (313)
T ss_pred ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence 79999999999999999999999999999988754332 1112 3457799999999
Q ss_pred CceEEEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEec---
Q 025163 57 CTITIGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSA--- 103 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--- 103 (257)
+=.|--|+|.+-..+. -+..+.-..+..|+-.+. . -.++-++.
T Consensus 85 Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPy-f---iPLvElVPaPw 160 (313)
T KOG2305|consen 85 AIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPY-F---IPLVELVPAPW 160 (313)
T ss_pred hhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCc-c---cchheeccCCC
Confidence 8888889998766655 111111233444443110 0 01122222
Q ss_pred CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163 104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP 179 (257)
Q Consensus 104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~ 179 (257)
..++.+++-+++.+.+|.+++.....-.+..+..+ -.+.++|.-.+....++...++..+++.|-+...
T Consensus 161 Tsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnri-------q~Ailne~wrLvasGil~v~dvD~VmS~GLG~RY 229 (313)
T KOG2305|consen 161 TSPDTVDRTRALMRSIGQEPVTLKREILGFALNRI-------QYAILNETWRLVASGILNVNDVDAVMSAGLGPRY 229 (313)
T ss_pred CChhHHHHHHHHHHHhCCCCcccccccccceeccc-------cHHHHHHHHHHHHccCcchhhHHHHHhcCCCcch
Confidence 35788999999999999776666553333333322 2356678888988888888888888887755443
No 119
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.66 E-value=6.6e-08 Score=83.38 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=55.5
Q ss_pred CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|+|||||+|.||..+|+.|+ ..|.+|++||+++.... ..++....+++++++++|+|++|+|.....+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence 68999999999999999995 45789999999865431 22345566899999999999999998765543
No 120
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.64 E-value=6e-06 Score=66.80 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=104.8
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 025163 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (257)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (257)
|||+|.|+|+- |..||-.++++||+|++.+.|.+ +.++..+.|+++++|..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 79999999974 67799999999999999976643 567777789999999999999
Q ss_pred cCceEEEccCChHHH-HH---------------------------------HHHhcCCcEEeccccCCccccccCcEEEE
Q 025163 56 KCTITIGMLADPAAA-LS---------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVIL 101 (257)
Q Consensus 56 ~~dvii~~v~~~~~~-~~---------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~ 101 (257)
.+++.++.+|..... .. +.+...+..-+++-.+-|...+++-+ ++
T Consensus 82 ~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-vi 160 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VI 160 (340)
T ss_pred cceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EE
Confidence 999999999988332 22 11112233333222222333334433 33
Q ss_pred ec--------CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 025163 102 SA--------GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLL 168 (257)
Q Consensus 102 ~~--------g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~ 168 (257)
.+ .+++..++..++.++.|+.+|.+.. .--+.+.=...++....+.++.+-..+..+ .|.+.+.+.
T Consensus 161 agr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe 235 (340)
T COG4007 161 AGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE 235 (340)
T ss_pred eccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 32 1467778899999999998877654 211121111222333444555555555553 555554443
No 121
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.64 E-value=5.6e-08 Score=72.88 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=55.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCC----C--cccCCHHHHhhcCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG----A--TVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g----~--~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
++.|||+|.+|.+++..|.+.|.+ |++++|+.++++++.+.- + ....+..+...++|+||.|+|.+..
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 789999999999999999999976 999999999999987641 1 2334555677899999999997643
No 122
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.63 E-value=1.3e-06 Score=69.35 Aligned_cols=110 Identities=20% Similarity=0.305 Sum_probs=81.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
|+|++||+|.+|..+...+.+. +++ |.+|||+.+++..+.+. +....++++|.+...|+++-|-......+- ..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~ 80 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKI 80 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHHH
Confidence 7999999999999999887753 355 88899999999887654 666668999999999999999886544433 33
Q ss_pred HhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEe
Q 025163 75 TSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFL 126 (257)
Q Consensus 75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~ 126 (257)
...|++++- +.+| .|+...++++++.+.-+.+++..
T Consensus 81 L~~g~d~iV----------------~SVGALad~~l~erl~~lak~~~~rv~~p 118 (255)
T COG1712 81 LKAGIDVIV----------------MSVGALADEGLRERLRELAKCGGARVYLP 118 (255)
T ss_pred HhcCCCEEE----------------EechhccChHHHHHHHHHHhcCCcEEEec
Confidence 344555422 2222 27888888888888888776554
No 123
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.63 E-value=1.2e-07 Score=79.73 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=83.2
Q ss_pred CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCC
Q 025163 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGG 79 (257)
Q Consensus 1 mkI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~ 79 (257)
.+|+|||.| .||.+|+.+|.++|++|++|++... ++.++++++|+||+|++.+..+.......|.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~ik~Ga 225 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADWLKPGA 225 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhhccCCc
Confidence 379999996 9999999999999999999987532 7889999999999999999887776667788
Q ss_pred cEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 80 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 80 ~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
.++|..+..... .+. .- +.||-+ ++.+.+.-..+.+ .-|.+|.-....+..|++.
T Consensus 226 iVIDvgin~~~~---~g~-~k-l~GDvd-f~~~~~~a~~iTP---VPGGVGp~Tva~L~~N~~~ 280 (301)
T PRK14194 226 VVIDVGINRIDD---DGR-SR-LVGDVD-FDSALPVVSAITP---VPGGVGPMTIAFLMKNTVT 280 (301)
T ss_pred EEEEecccccCC---CCC-cc-eecccc-hHHHHhhcceecC---CCCchhHHHHHHHHHHHHH
Confidence 888877653211 111 01 223332 2334443332221 1244677777777777663
No 124
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.62 E-value=1.3e-07 Score=79.87 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=57.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~ 67 (257)
+++|||+|.||..+++.|...|.+|++++|++++.+++.+.|.... .++.+.++++|+||.|+|..
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence 7999999999999999999999999999999988877777675533 35667888999999999875
No 125
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.58 E-value=1.2e-07 Score=80.89 Aligned_cols=70 Identities=17% Similarity=0.433 Sum_probs=55.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++|||||+|.||..+|+.|...|++|.+|++++++...... .....+++++++++|+|++++|.......
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 47999999999999999999999999999997654321111 11235788999999999999998877665
No 126
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.58 E-value=1.5e-07 Score=80.70 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=55.8
Q ss_pred eEEEEcCChhHHHHHHHHHH-C-CCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~-g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
+|+|||+|.||..++..+.. + ..+|++|+|++++.+++.+. | +..+.+++++++++|+|+.|++..
T Consensus 127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 69999999999999986664 3 47899999999998888664 4 556788999999999999888865
No 127
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.57 E-value=2.2e-07 Score=78.93 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=54.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
.+|||||+|.||..+|+.|..-|++|.+|||+... .+... ..+++++++++|+|++++|.....+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 37999999999999999888889999999997432 23332 46899999999999999998876554
No 128
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.50 E-value=7.1e-07 Score=77.56 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=73.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCC---Ccc-------cCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---ATV-------GGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g---~~~-------~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|||-|||+|.+|+..|..|+++| ++|++-||++++++++.... +++ ...+.+++++.|+||.|.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999999 89999999999999997763 221 12445778899999999998877
Q ss_pred HHH--HHHhcCCcEEeccccCCc
Q 025163 70 ALS--AITSKGGHFLEAPVSGSK 90 (257)
Q Consensus 70 ~~~--~~~~~g~~~~~~pv~~~~ 90 (257)
... .....|++|+|-.....+
T Consensus 82 ~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 82 LTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred HHHHHHHHHhCCCEEEcccCCch
Confidence 765 566789999996654443
No 129
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.49 E-value=4.8e-07 Score=76.13 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=83.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEc-CCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcC
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKG 78 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g 78 (257)
.+|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++.+|+||+|++.+..++..+...|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~lk~G 223 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDWIKPG 223 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchheecCC
Confidence 3799999 99999999999999999999995 653 468888999999999999988777666678
Q ss_pred CcEEeccccCCcc-ccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 79 GHFLEAPVSGSKQ-PAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 79 ~~~~~~pv~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
..++|..+..-+. ....|.. -++ ||-+ ++.+++.-..+.. .-|.+|.-....+..|++.
T Consensus 224 avVIDvGin~~~~~~~~~g~~-~l~-GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 283 (296)
T PRK14188 224 ATVIDVGINRIPAPEKGEGKT-RLV-GDVA-FAEAAEVAGAITP---VPGGVGPMTIACLLANTLT 283 (296)
T ss_pred CEEEEcCCcccCCccccCCCc-eee-CCCC-HHHHHhhccEecC---CCCChhHHHHHHHHHHHHH
Confidence 8899987754211 1011210 122 4433 2344444333322 1244666677777777663
No 130
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.49 E-value=4.9e-07 Score=82.66 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=58.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++|||||+|.||..+|+.|...|++|.+||+... .+...+.|+...++++|+++++|+|++++|.....+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence 3799999999999999999999999999998532 2333445776667899999999999999997765544
No 131
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.48 E-value=5.1e-07 Score=82.59 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=58.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++|||||+|.||..+|+.|...|++|.+|||+... +.....|+... +++|+++.+|+|++|+|.......
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRG 210 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhc
Confidence 47999999999999999999999999999996432 33345577666 899999999999999998765544
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.46 E-value=3.4e-07 Score=78.36 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=64.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhcCceEEEccCChHH---HHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAA---ALSA 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~---~~~~ 73 (257)
++|+|||+|.||..+++.|...| ++|++++|++++.+.+++. |.... .+..+.+.++|+||.|++.+.. ....
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 58999999999999999999866 6899999999988777654 54322 2456777899999999998766 1212
Q ss_pred HHh---cCCcEEeccc
Q 025163 74 ITS---KGGHFLEAPV 86 (257)
Q Consensus 74 ~~~---~g~~~~~~pv 86 (257)
+.. ++..++|..+
T Consensus 259 ~~~~~~~~~~viDlav 274 (311)
T cd05213 259 MKKRSGKPRLIVDLAV 274 (311)
T ss_pred HhhCCCCCeEEEEeCC
Confidence 222 3456667554
No 133
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.46 E-value=1.8e-05 Score=65.75 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=60.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
||+|||.|+-|.+-|.+|.++|.+|++--|..+. .+...+.|..+. +++|+++.+|+|++.+|+....+.
T Consensus 20 ~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~~v 90 (338)
T COG0059 20 KVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQKEV 90 (338)
T ss_pred eEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHHHH
Confidence 7999999999999999999999999988775554 677777787755 899999999999999999877665
No 134
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.46 E-value=4.4e-07 Score=78.10 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=55.8
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CC--CcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HG--ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|.+|...+..|... ..+|.+|||++++.+.+.+ .| +..+.+++++++++|+|++|+|+..
T Consensus 130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence 689999999999977777643 4689999999999887755 35 4567899999999999999998753
No 135
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.45 E-value=9.1e-06 Score=65.88 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=129.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHH-HHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--- 72 (257)
|+++|||.|+|..++++.+.+.|. ++..+..+...... +...|++++.+..+.++.+|+++++|+.....+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~ 80 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSE 80 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhhc
Confidence 899999999999999999999884 56666554333344 7778998887778899999999999997655544
Q ss_pred ---------------------HHH-hcC--CcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeE-
Q 025163 73 ---------------------AIT-SKG--GHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAF- 124 (257)
Q Consensus 73 ---------------------~~~-~~g--~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~- 124 (257)
.+. ..+ ...+. +| ..+...+.+..++..+. ..+..+.+++++..+|.-..
T Consensus 81 ~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~ev 158 (267)
T KOG3124|consen 81 IKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEV 158 (267)
T ss_pred CccccccceEEEEEeecccHHHHHHhcCCCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeC
Confidence 000 000 11111 11 12334444443232322 34445778899998885321
Q ss_pred -------EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc-CCCchhhh--ccCCcccCCCC-
Q 025163 125 -------FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG-GIANPMFK--GKGPTMLQSNY- 193 (257)
Q Consensus 125 -------~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~-~~~s~~~~--~~~~~~~~~~~- 193 (257)
+.|-.|++-. +..+++.++.+. .-+.|++++..+++...+ .+...+.. ...|..++.+.
T Consensus 159 pE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 159 PEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC 228 (267)
T ss_pred cHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence 1222233322 444445455444 667889988777766543 22222222 12234444443
Q ss_pred CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 194 APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 194 ~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
+|+-+. =+.+...++-|++.-+..++.+.-.++++-
T Consensus 229 SPgG~T-------I~glh~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 229 SPGGTT-------IYGLHALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred CCCcch-------HHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 343221 124566777788888888888777777654
No 136
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.45 E-value=9.5e-07 Score=75.00 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=59.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~ 69 (257)
.|++|||.|.+|..++..|...|.+|++++|++++.+.....|.+.. .++.+.++++|+||.|+|....
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i 223 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL 223 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh
Confidence 47999999999999999999999999999999988887777787644 3566788899999999986543
No 137
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.45 E-value=1.2e-05 Score=70.83 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=56.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC------chhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
++|+|||+|+.|.+.|.+|...|++|++--|. .+..+.+.+.|..+ .+++|+++.+|+|++++|+...
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~q 110 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQH 110 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHHH
Confidence 47999999999999999999999999954443 34556666678766 5799999999999999999853
No 138
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.42 E-value=6.1e-06 Score=68.69 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=63.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~ 75 (257)
|||+|||+ |.||..++..+.+. ++++. ++|+++++.......++....+++++++++|+|+.++|+....+. ...
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al 81 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLEFAL 81 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHH
Confidence 79999998 99999999998864 57754 478887765544333566778898888889999988876665554 555
Q ss_pred hcCCcEEecc
Q 025163 76 SKGGHFLEAP 85 (257)
Q Consensus 76 ~~g~~~~~~p 85 (257)
..|.+++-+|
T Consensus 82 ~~G~~vvigt 91 (257)
T PRK00048 82 EHGKPLVIGT 91 (257)
T ss_pred HcCCCEEEEC
Confidence 6777766443
No 139
>PLN02928 oxidoreductase family protein
Probab=98.42 E-value=9.6e-07 Score=76.58 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=54.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH------------HHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
++|||||+|.||..+|+.|...|.+|++|||+..+.... ...+. ...+++++++++|+|++++|...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence 479999999999999999999999999999974332111 11112 34589999999999999999775
Q ss_pred HHHH
Q 025163 69 AALS 72 (257)
Q Consensus 69 ~~~~ 72 (257)
....
T Consensus 239 ~T~~ 242 (347)
T PLN02928 239 ETAG 242 (347)
T ss_pred Hhhc
Confidence 5443
No 140
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.42 E-value=9.1e-06 Score=66.93 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC---Ce-EEEEcCCchhHHHHHHCCCcccCCHHHH-hhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~--~ 73 (257)
+||+|||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. ..+..|++++ ...+|+|+-|-......+- .
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~ 81 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEG 81 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHHHHH
Confidence 58999999999999999987642 44 45578888888888765 7788899996 5889999999886654443 3
Q ss_pred HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEE
Q 025163 74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~ 125 (257)
+...|..++-. .+| .|++..+++++..+.-+.+++.
T Consensus 82 iL~~g~dlvv~----------------SvGALaD~~~~~~l~~~A~~~g~~i~i 119 (267)
T PRK13301 82 CLTAGLDMIIC----------------SAGALADDALRARLIAAAEAGGARIRV 119 (267)
T ss_pred HHhcCCCEEEE----------------ChhHhcCHHHHHHHHHHHHhCCCEEEE
Confidence 33445444211 112 2777788888888887766544
No 141
>PLN00203 glutamyl-tRNA reductase
Probab=98.38 E-value=7.2e-07 Score=80.91 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=56.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC--CCc----ccCCHHHHhhcCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
+|+|||+|.||..+++.|...|. +|++++|++++.+.+.+. +.. ...+..+++.++|+||.|++.+..
T Consensus 268 kVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 268 RVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred EEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 79999999999999999999996 699999999999988764 322 234666788999999999875543
No 142
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.38 E-value=8.9e-07 Score=77.38 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=51.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
++|||||+|+||..+++.|...|++|.+||+..... .+.....++++++++||+|++++|...
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTK 179 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCC
Confidence 479999999999999999999999999999854321 122334589999999999999999654
No 143
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.38 E-value=1.2e-06 Score=74.74 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=50.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH----HHHC--------CCcccCCHHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH--------GATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~----l~~~--------g~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
|||+|||+|.||..+|..|+.+|+ +|+++|++++..+. +.+. .++.+.+.++ ++++|+||+|++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 799999999999999999999887 89999997664331 1111 1233467766 68999999998854
No 144
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.36 E-value=1.3e-06 Score=74.62 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=51.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHH----HHHCC-----Cc-ccCCHHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----AT-VGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~-~~~~~~~~~~~~dvii~~v~~~ 67 (257)
|||+|||+|.+|..+|..|+.+| ++|.++|+++++++. +.... .. .+.+. +.++++|++|+|++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 89999999999999999999999 689999999876653 33211 11 12344 5678999999998764
No 145
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=74.66 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=58.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|.+|+.+|..+..-|.+|.+||+...+- .....+.....+++++++.||+|.+.+|-......
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 479999999999999999999999999999933321 22234567778999999999999999998766554
No 146
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.35 E-value=1.9e-06 Score=73.73 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=56.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|.+|.++|+++..-|.+|..|+|++. -+.-.+.+.+... ++|++++||+|.+.+|.......
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence 4799999999999999999977889999999875 2323333455554 99999999999999998776555
No 147
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.4e-05 Score=63.74 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=111.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------- 72 (257)
|.++|||.|..|.+...+-...+..+..+ .|++++.+.|.+.-+-...+.+...+-.+++|+-||+....+.
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa~~~~r 90 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAATSLNR 90 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHHhcccC
Confidence 56899999999999655544444454433 7888888887765332333343333455788888887733333
Q ss_pred ---------------H---HHhcCCcEEe-cc---ccCCccccc--cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163 73 ---------------A---ITSKGGHFLE-AP---VSGSKQPAE--TGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 128 (257)
Q Consensus 73 ---------------~---~~~~g~~~~~-~p---v~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~ 128 (257)
. +...|..-.+ .| +++.+...+ .+++..+..+|.--+..++.+...+|.+.+.+-+
T Consensus 91 pg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~ 170 (289)
T COG5495 91 PGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVRE 170 (289)
T ss_pred CCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeech
Confidence 1 1122322222 22 223333333 4555555567777788899999999999888876
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Q 025163 129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD-PRTLLD 169 (257)
Q Consensus 129 ~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~-~~~~~~ 169 (257)
+.-.+.....|...+.....+.++..+.+..|.| ++.+.+
T Consensus 171 -~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~ 211 (289)
T COG5495 171 -EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVE 211 (289)
T ss_pred -hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeee
Confidence 7777888888888888899999999999999987 444433
No 148
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.34 E-value=9.2e-07 Score=78.78 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=52.9
Q ss_pred CeEEEEcCChhHHHHHH--HH----HHCCCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~--~L----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvii~ 62 (257)
|||+|||+|+||.+++. .+ ..+|++|.+||+++++++..... .+..++|+.++++++|+||.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 79999999999998665 34 34578999999999887765431 13457788899999999999
Q ss_pred ccCC
Q 025163 63 MLAD 66 (257)
Q Consensus 63 ~v~~ 66 (257)
+++.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9985
No 149
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.4e-06 Score=70.98 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=56.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH--CCCcc----cCC---HHHH-hhcCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV----GGS---PAEV-IKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~--~g~~~----~~~---~~~~-~~~~dvii~~v~~~~~~ 70 (257)
|+|.|||+|.+|..+|+.|.+.||+|++.+++++++++... ....+ .++ +.++ +.++|+++.++.++...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 89999999999999999999999999999999999988544 33222 112 2333 46899999999887654
Q ss_pred HH
Q 025163 71 LS 72 (257)
Q Consensus 71 ~~ 72 (257)
..
T Consensus 81 ~i 82 (225)
T COG0569 81 SV 82 (225)
T ss_pred HH
Confidence 44
No 150
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.31 E-value=1.2e-06 Score=77.98 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=56.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
+|+|||+|.||..++..|...| .+|++++|++++.+.+.+. |.. ...+..+++.++|+||.|++.+..
T Consensus 182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence 7999999999999999999999 7899999999988777653 432 223566778899999999976654
No 151
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.30 E-value=2.2e-05 Score=65.68 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=56.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEEE-EcCC--chhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRT--LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r~--~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
|||+|||+|.||..+++.+.+. +.++.. +++. .++.......+....+|++++..+.|+|+.|+|.....+. ..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~a 81 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHVVPI 81 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHH
Confidence 7999999999999999999876 455443 3442 2222222223667788888874568999999998766554 44
Q ss_pred HhcCCcEE
Q 025163 75 TSKGGHFL 82 (257)
Q Consensus 75 ~~~g~~~~ 82 (257)
...|.+++
T Consensus 82 L~aGk~Vv 89 (265)
T PRK13303 82 LKAGIDCA 89 (265)
T ss_pred HHcCCCEE
Confidence 45666654
No 152
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.30 E-value=1.8e-06 Score=75.54 Aligned_cols=68 Identities=29% Similarity=0.456 Sum_probs=57.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|+.|||+|.||...|++|.++| .+|++.||+.++.++|++. |.. ...+..+.+.++|+||+|+..+..
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCcc
Confidence 6899999999999999999999 6799999999999999875 533 334566778899999999865544
No 153
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.29 E-value=2.3e-06 Score=73.18 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=48.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHH----HC----C--Cc--ccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH----G--AT--VGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~----~~----g--~~--~~~~~~~~~~~~dvii~~v~ 65 (257)
|||+|||+|.||..+|..++..|+ +|.++|+++++.+... +. + .+ ...+. +.++++|+||+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 689999999999999999999876 9999999887654321 11 1 12 23455 45789999999974
No 154
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.29 E-value=1.7e-06 Score=65.24 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=50.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+ |.+|..++..|...+. ++.++|+++++++-.... .........+.++++|+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 89999999 9999999999998874 799999997765433211 123334556777899999998743
No 155
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=8.6e-06 Score=68.07 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=80.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
+|+|||. |.||.+|+..|.++|++|++|... +.++.+.++++|+||++++.+..++..+-..|..
T Consensus 160 ~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~Gav 225 (284)
T PRK14179 160 HAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEFVKEGAV 225 (284)
T ss_pred EEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHHccCCcE
Confidence 7999999 999999999999999999999321 1268889999999999999998877766677888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. +.||-+ ++.+.+.-+.+.. .-|.+|.-...-+..|++.
T Consensus 226 VIDvgin~~~----~gk----l~GDVd-f~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 276 (284)
T PRK14179 226 VIDVGMNRDE----NGK----LIGDVD-FDEVAEVASYITP---VPGGVGPMTITMLMEQTYQ 276 (284)
T ss_pred EEEecceecC----CCC----eecCcc-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHH
Confidence 8887765321 122 224333 2334443332222 1234666666667777653
No 156
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=67.10 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=52.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
|||+|||+ |..|+.+.+-..++||+|+.+-||++++..+... .+.-.++..+.+.+-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 99999998 9999999999999999999999999998664221 1111223446677899999987544
No 157
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.26 E-value=9.2e-06 Score=63.01 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=58.5
Q ss_pred eEEEEcCChh-HHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~m-G~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
+|.|||.|.| |..+++.|.+.|.+|++.+|+. .++.+.++++|+||.|++.+.......-..+..
T Consensus 46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~v 111 (168)
T cd01080 46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAV 111 (168)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCceecHHHccCCeE
Confidence 7899999997 8889999999999999999973 255678889999999999876444333345677
Q ss_pred EEeccccCC
Q 025163 81 FLEAPVSGS 89 (257)
Q Consensus 81 ~~~~pv~~~ 89 (257)
++|..+...
T Consensus 112 iIDla~prd 120 (168)
T cd01080 112 VIDVGINRV 120 (168)
T ss_pred EEEccCCCc
Confidence 888776543
No 158
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.26 E-value=3e-05 Score=66.03 Aligned_cols=117 Identities=9% Similarity=0.202 Sum_probs=75.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCc-hhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~ 75 (257)
+||+|||+|+||...+..+.++ +.++. +|+|++ +++. ...+.....+..+...+.|+|++|+|+....+. .+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~L 81 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPYF 81 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHHH
Confidence 4899999999999999999876 67865 479985 4333 223444555777777889999999998766555 445
Q ss_pred hcCCcEEecc-ccCCc--------cccc-cCcEEEEecC-ChhhHHHHHHHHHHh
Q 025163 76 SKGGHFLEAP-VSGSK--------QPAE-TGQLVILSAG-EKALYDEAISALNVI 119 (257)
Q Consensus 76 ~~g~~~~~~p-v~~~~--------~~~~-~~~~~~~~~g-~~~~~~~~~~~l~~~ 119 (257)
..|+..++.- ..... ..++ .+...++..| |+..+...+-+.+.+
T Consensus 82 ~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~ 136 (324)
T TIGR01921 82 AQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAV 136 (324)
T ss_pred HcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhcc
Confidence 6788877742 11111 1222 2455555545 555554444444444
No 159
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.26 E-value=3.3e-06 Score=72.11 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=51.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC--------C--CcccCCHHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
+||+|||+|.+|..++..|+..| ++|.++||++++++.+... + ........+.++++|+||+++..+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 58999999999999999999999 6899999999887655431 1 122223334578999999998654
No 160
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.25 E-value=2e-06 Score=76.67 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=56.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcc--cCCHHHHhhcCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
++|+|||+|.||..++..|...|. +|++++|++++.+.+.+. |... ..+..+.+.++|+||.|++.+...
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 479999999999999999999997 799999999998877654 4332 234556778999999999876543
No 161
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.25 E-value=4.1e-06 Score=71.44 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=55.9
Q ss_pred eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC----CCcc-cCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+. +... ..+.++++.++|+|+.|+|+..
T Consensus 127 ~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 127 DLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 69999999999999999975 45 4799999999998887653 3333 4688889999999999999873
No 162
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.25 E-value=3.1e-06 Score=73.85 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=50.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
++|||||+|+||+.+|+.|..-|.+|.+||+..... ... ....++++++++||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFK 179 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCC
Confidence 479999999999999999999999999999743211 111 134589999999999999998543
No 163
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.25 E-value=2.4e-06 Score=75.65 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=64.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-C-Cc--ccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-AT--VGGSPAEVIKKCTITIGMLADPAAALS--A 73 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g-~~--~~~~~~~~~~~~dvii~~v~~~~~~~~--~ 73 (257)
.||.|||+|.||..++..|.+.|. +|++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+..+-. .
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~~~ 261 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIVTCKY 261 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeECHHH
Confidence 379999999999999999999995 799999999999988874 3 22 224456678899999999987755322 2
Q ss_pred HHhcCCcEEeccc
Q 025163 74 ITSKGGHFLEAPV 86 (257)
Q Consensus 74 ~~~~g~~~~~~pv 86 (257)
...+...++|-.+
T Consensus 262 ~~~~~~~~iDLav 274 (414)
T PRK13940 262 VGDKPRVFIDISI 274 (414)
T ss_pred hCCCCeEEEEeCC
Confidence 2233445666444
No 164
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.24 E-value=4.5e-06 Score=71.67 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=55.1
Q ss_pred CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|++|..+|+.+. .-|.+|.+|+|.... +.....|... .++++++++||+|++++|-......
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhh
Confidence 37999999999999999997 678899999986432 2223345554 4899999999999999998766554
No 165
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.24 E-value=3.4e-06 Score=74.73 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=55.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|.+|..+|+.+..-|.+|.+||+++.. ...+.....+++|+++.||+|++++|.......
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~ 219 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKN 219 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence 37999999999999999999999999999986432 112345566899999999999999998766554
No 166
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.24 E-value=5.9e-06 Score=63.07 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=51.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
++.|+|.|..|..+|+.|...|.+|++++++|-+.-+....|..+. +.++++..+|++|.++-...
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~ 90 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKD 90 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSS
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCcc
Confidence 6889999999999999999999999999999988877777898776 78999999999999887654
No 167
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.23 E-value=4.1e-06 Score=72.32 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=56.6
Q ss_pred CeEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
++++|||+|.+|.+.+..|.. .+ .+|.+|+|++++.+++.+. |+. ...++++++.++|+|+.|+|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 479999999999999988885 44 5799999999999888652 443 35788899999999999998753
No 168
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.21 E-value=4.7e-06 Score=71.80 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=56.0
Q ss_pred eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|.+|...+..|.. .+ .+|++|+|++++.+++.+. |+. ..++++++++++|+|+.|+|...
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 68999999999999999974 56 4699999999998887652 443 36788899999999999999753
No 169
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.21 E-value=1.4e-05 Score=71.26 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=83.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHhcCC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITSKGG 79 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~~g~ 79 (257)
+|.|||.|.+|..+|..|.+.|++|+++|++++..+......-....+.....+++|++|.+.+.+..... .....|+
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g~ 84 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASHI 84 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCCC
Confidence 69999999999999999999999999999987654321110001122344444678999888754422221 4556777
Q ss_pred cEEeccccCCccc-cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163 80 HFLEAPVSGSKQP-AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA 133 (257)
Q Consensus 80 ~~~~~pv~~~~~~-~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~ 133 (257)
..++-+...-... ....+..-+.| |...+.+.+..+|+..+......|++|...
T Consensus 85 ~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~ 141 (418)
T PRK00683 85 PVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI 141 (418)
T ss_pred cEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence 7666443211110 11122223333 345667789999999998777788877553
No 170
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.19 E-value=1.5e-05 Score=70.55 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=59.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL 71 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~ 71 (257)
+++|+|+|.+|..++..|...|.+|+++|+++.+.......|..+ .+.+++++.+|+||.|+.+.....
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~ 282 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVIT 282 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHH
Confidence 689999999999999999999999999999998876666667664 467888999999999987766554
No 171
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.18 E-value=1e-05 Score=70.04 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=85.3
Q ss_pred CeEEEEcCChhH-HHHHHHHHHCCC---eEEEEcCCchhHHHHHHC-CC-cccCCHHHHhhc--CceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMG-KAISMNLLRNGF---KVTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG-~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~--~dvii~~v~~~~~~~~ 72 (257)
|||||||+|.++ ......+.+.+. -|.++|+++++++.+.+. |+ ...+|+++++++ .|+|++|+|+....+.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~ 83 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL 83 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence 589999999555 568888888763 377789999999888765 66 478899998875 6999999999988887
Q ss_pred --HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH
Q 025163 73 --AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN 117 (257)
Q Consensus 73 --~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~ 117 (257)
.....|.+ +++-|+......+. +....++++-+ ...+.++++++.
T Consensus 84 ~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~ 141 (342)
T COG0673 84 ALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELID 141 (342)
T ss_pred HHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHh
Confidence 44456665 67888887755333 22334555543 245667788777
No 172
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.18 E-value=6.1e-05 Score=63.02 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=75.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHC-CCeE-EEEcCC-chhH----HHHHH---CCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRN-GFKV-TVWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~-g~~V-~~~~r~-~~~~----~~l~~---~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|||+|+| +|.||..+++.+.+. ++++ .++||+ +++. ..+.. .|+...++++++...+|+||.|+++...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~ 81 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV 81 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH
Confidence 6999999 699999999999864 6774 446854 2221 12211 3566678888875578999999987766
Q ss_pred HHH--HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHH
Q 025163 70 ALS--AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLV 138 (257)
Q Consensus 70 ~~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~ 138 (257)
.+. .....|.+++-... +-+.+..+++.+.-+.-+..+++..+ +|...+.++.
T Consensus 82 ~~~~~~al~~g~~vVigtt----------------g~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~ 138 (266)
T TIGR00036 82 LNHLKFALEHGVRLVVGTT----------------GFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLL 138 (266)
T ss_pred HHHHHHHHHCCCCEEEECC----------------CCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHH
Confidence 555 45566766543221 11444555666665554444555444 4444444433
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.18 E-value=3e-05 Score=57.45 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=71.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhcCceEEEccCChHHHHH---
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALS--- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvii~~v~~~~~~~~--- 72 (257)
+||.+||+| -|..+|..|.+.|++|+..|.+++.++.+++.+..+ ....-+.-+++|+|..+=|.++....
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH
Confidence 479999999 999999999999999999999999999888876543 22334567899999999998877665
Q ss_pred HHHhcCCcEEeccccCCc
Q 025163 73 AITSKGGHFLEAPVSGSK 90 (257)
Q Consensus 73 ~~~~~g~~~~~~pv~~~~ 90 (257)
..+..++.++=-|.++..
T Consensus 97 la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 97 LAKKINVPLIIKPLSGEE 114 (134)
T ss_pred HHHHcCCCEEEEcCCCCC
Confidence 444557777777776554
No 174
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.17 E-value=7.7e-06 Score=69.62 Aligned_cols=70 Identities=24% Similarity=0.202 Sum_probs=60.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+|+|+|+|++|..+|++|..-|..+..+.|++...+...+.+.. ..|..+.+.++|+|++|+|.......
T Consensus 164 ~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~ 233 (336)
T KOG0069|consen 164 TVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRH 233 (336)
T ss_pred EEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHH
Confidence 79999999999999999999886677778988877777776666 55888999999999999998877665
No 175
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.16 E-value=7.2e-06 Score=60.18 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=57.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCC-e-EEEEcCCchhHHHHHHC--------CCcccCCHHHHhhcCceEEEccCChHHH
Q 025163 2 EVGFLG-LGIMGKAISMNLLRNGF-K-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 2 kI~iIG-~G~mG~~la~~L~~~g~-~-V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
||+||| +|++|..+.+.|.++-+ + +.+++++.+.-+.+... ...+.....+...++|+||+|+|+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 799999 89999999999999643 4 55566665333333322 1223332334458999999999988776
Q ss_pred HH--HHHhcCCcEEecc
Q 025163 71 LS--AITSKGGHFLEAP 85 (257)
Q Consensus 71 ~~--~~~~~g~~~~~~p 85 (257)
+. .+...|+.++|..
T Consensus 81 ~~~~~~~~~g~~ViD~s 97 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLS 97 (121)
T ss_dssp HHHHHHHHTTSEEEESS
T ss_pred HHHHHHhhCCcEEEeCC
Confidence 65 6678899888854
No 176
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.15 E-value=5.9e-06 Score=70.65 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=53.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|.+|..+|+.+..-|.+|..|||..... ..+.. ..+++++++.||+|++++|-......
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~ 212 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKN 212 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhc
Confidence 379999999999999999998899999999964321 22333 34899999999999999997765443
No 177
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.15 E-value=7.7e-06 Score=68.62 Aligned_cols=66 Identities=27% Similarity=0.399 Sum_probs=52.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHH-hhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~-~~~~dvii~~v~~~ 67 (257)
++.|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+. +.....+..+. ..++|+||.|+|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAG 189 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCC
Confidence 68999999999999999999999999999999988877653 32222234333 35799999999975
No 178
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.14 E-value=7.8e-06 Score=69.54 Aligned_cols=67 Identities=7% Similarity=0.207 Sum_probs=56.4
Q ss_pred eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|..|...+..+... . .+|.+|+|++++.+++.+. | +.++.++++++.++|+|+.|+++..
T Consensus 119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 589999999999999988864 2 3799999999998887543 4 4557899999999999999999764
No 179
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.14 E-value=1e-05 Score=72.04 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=57.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
+++|||.|.+|..+|..|...|.+|+++++++.+.......|.... +.+++++.+|+|++|+.+....
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~iI 323 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKDII 323 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccccc
Confidence 6899999999999999999999999999999887655555676543 7889999999999998655443
No 180
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.11 E-value=1.7e-05 Score=69.74 Aligned_cols=70 Identities=24% Similarity=0.172 Sum_probs=59.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++|+|+|.+|..+++.+...|.+|+++++++.+.......|..+. +.+++++++|++|.++........
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH
Confidence 6899999999999999999999999999999988766666776544 567888999999999887665543
No 181
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.11 E-value=9.2e-06 Score=59.89 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=54.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH-CCCe-EEEEcCCch-h----HHHHH---HCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLR-NGFK-VTVWNRTLS-K----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~-~g~~-V~~~~r~~~-~----~~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|||+|+|+ |.||..+++.+.+ .+++ |-+++|+++ . +-++. ..|+.+.++++++.+.+|++|-++. +..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH
Confidence 89999999 9999999999998 6778 455688762 1 11221 2467788999999999999998883 334
Q ss_pred HHH---HHHhcCCcE
Q 025163 70 ALS---AITSKGGHF 81 (257)
Q Consensus 70 ~~~---~~~~~g~~~ 81 (257)
... ....+|..+
T Consensus 80 ~~~~~~~~~~~g~~~ 94 (124)
T PF01113_consen 80 VYDNLEYALKHGVPL 94 (124)
T ss_dssp HHHHHHHHHHHT-EE
T ss_pred hHHHHHHHHhCCCCE
Confidence 333 344445544
No 182
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.09 E-value=8.9e-05 Score=67.49 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=86.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC--CHHHHhhcCceEEEcc--CChHHHHHHHHhc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGML--ADPAAALSAITSK 77 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~~~~~~ 77 (257)
+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+. |.....-...+..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~~ 93 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAAA 93 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999999999999999887777667667875532 2334567889998864 4332222255667
Q ss_pred CCcEEeccccCCcccc----c-cCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163 78 GGHFLEAPVSGSKQPA----E-TGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA 133 (257)
Q Consensus 78 g~~~~~~pv~~~~~~~----~-~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~ 133 (257)
|+.++.-.-....... . .....-+.| |...+.+.+..+|+..+.+....|++|...
T Consensus 94 gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p~ 156 (488)
T PRK03369 94 GVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV 156 (488)
T ss_pred CCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchHH
Confidence 7776653222111100 0 112233333 344556678899998887777777776543
No 183
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.08 E-value=3.8e-05 Score=64.52 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=61.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchh--HHHHHHCCCccc-CCHHHHhh--cCceEEEccCChHHHHH-
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSK--CDELVAHGATVG-GSPAEVIK--KCTITIGMLADPAAALS- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~~-~~~~~~~~--~~dvii~~v~~~~~~~~- 72 (257)
+||+|||+|.||..++..+.+. +.++. ++++++++ ++...+.|+... .+.+++++ +.|+|++|+|+..+.+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 5899999999999988777753 56654 56888875 333445677644 47787775 57899999999988776
Q ss_pred -HHHhcCCcEEe
Q 025163 73 -AITSKGGHFLE 83 (257)
Q Consensus 73 -~~~~~g~~~~~ 83 (257)
.....|.+.++
T Consensus 82 ~~al~aGk~VId 93 (285)
T TIGR03215 82 RLLAELGKIVID 93 (285)
T ss_pred HHHHHcCCEEEE
Confidence 56677877766
No 184
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.08 E-value=2.1e-05 Score=69.40 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=60.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++|+|+|.+|..++..+...|.+|+++++++.+.+.....|.... +.+++++.+|+||.|+........
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~ 273 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG 273 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH
Confidence 6899999999999999999999999999999999888888887544 567888899999999987765543
No 185
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.08 E-value=1.7e-05 Score=69.96 Aligned_cols=81 Identities=31% Similarity=0.461 Sum_probs=59.6
Q ss_pred EEEEcCChhHHHHHHHHHHCC-C-eEEEEcCCchhHHHHHHC--C--Ccc----cC---CHHHHhhcCceEEEccCChHH
Q 025163 3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--G--ATV----GG---SPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g-~-~V~~~~r~~~~~~~l~~~--g--~~~----~~---~~~~~~~~~dvii~~v~~~~~ 69 (257)
|.|||+|.+|..+++.|++++ + +|++.||+.++++++.+. + +.. .. ++.++++++|+||-|+|....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~ 80 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG 80 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence 789999999999999999987 4 899999999999988753 2 111 11 355678899999999987644
Q ss_pred HHH--HHHhcCCcEEe
Q 025163 70 ALS--AITSKGGHFLE 83 (257)
Q Consensus 70 ~~~--~~~~~g~~~~~ 83 (257)
... .....|++|+|
T Consensus 81 ~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 81 EPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHhCCCeec
Confidence 333 56678999999
No 186
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.05 E-value=1.5e-05 Score=67.23 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=53.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----C-Cc--ccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-AT--VGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g-~~--~~~~~~~~~~~~dvii~~v~~~ 67 (257)
++.|||+|.+|.+++..|.+.|. +|+++||+.++.+.+.+. . .. ...+..+.++++|+||-|+|..
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 68999999999999999999997 799999999999888652 1 11 1234445667899999999865
No 187
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.04 E-value=1.5e-05 Score=68.24 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=55.5
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CCC--cccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HGA--TVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|..+...+..+... -.+|.+|+|++++.+++.+ .+. .++++.+++++++|+|+.|+++..
T Consensus 130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence 589999999999999988864 2479999999999887654 243 347889999999999999998664
No 188
>PLN02494 adenosylhomocysteinase
Probab=98.02 E-value=3.7e-05 Score=68.48 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
+++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+...
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v 322 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI 322 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc
Confidence 6899999999999999999999999999999887666666676654 678889999999998876654
No 189
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.02 E-value=2.2e-05 Score=67.71 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=55.1
Q ss_pred eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+. ++ ....+.+++++++|+|+.|+|...
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence 68999999999999888764 34 4799999999998887652 43 346788999999999999999763
No 190
>PRK06046 alanine dehydrogenase; Validated
Probab=98.02 E-value=1.7e-05 Score=68.37 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=54.2
Q ss_pred eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|.+|...+..|... + ..|.+|||++++.+++.+. + +....+++++++ +|+|++|+|+..
T Consensus 131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence 689999999999999999854 3 3699999999998887653 4 345678889887 999999999753
No 191
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.02 E-value=2e-05 Score=67.51 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=52.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++||||+|.+|..+|+.+..-|.+|..|++.... .. .. ...+++++++.||+|++++|-......
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~ 213 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQN 213 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhc
Confidence 37999999999999999999889999999986431 11 11 134899999999999999997766544
No 192
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.02 E-value=2.1e-05 Score=67.45 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=52.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++||||+|.+|..+|+.+..-|.+|.+|+|.... .... ..+++++++.||+|++++|-......
T Consensus 150 tvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~ 213 (317)
T PRK06487 150 TLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRH 213 (317)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhc
Confidence 7999999999999999999889999999986321 1112 24799999999999999997766544
No 193
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.02 E-value=1.4e-05 Score=72.04 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=56.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCccc----C---CHHHH-hhcCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG----G---SPAEV-IKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~---~~~~~-~~~~dvii~~v~~~~~~ 70 (257)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .|.... . .+.++ ++++|.+|++++++..-
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence 89999999999999999999999999999999999998876 443221 1 22333 56899999999876543
No 194
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.01 E-value=1.9e-05 Score=71.50 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=52.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHH--HhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAE--VIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~--~~~~~dvii~~v~~~~ 68 (257)
+++.|+|+|.+|.+++..|.+.|++|++++|+.++.+.+.+. +.... +..+ .+.++|+||.|+|...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~ 402 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSV 402 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999999988887654 22111 1222 2468999999999774
No 195
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.01 E-value=1.7e-05 Score=66.92 Aligned_cols=66 Identities=24% Similarity=0.306 Sum_probs=53.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCC-----CcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
++.|+|+|.+|.+++..|.+.| .+|++++|+.++.+.+.+.- +....+..+.+.++|+||-|+|..
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 6889999999999999999999 78999999999988886541 111113345667899999999976
No 196
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.01 E-value=1.4e-05 Score=68.40 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=49.3
Q ss_pred eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
+++|||+|..|...+..+.. .+ .+|.+|+|++++.+++.+. + +..+.|++++++++|+|+.|+|+..
T Consensus 130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence 58999999999999998876 33 4799999999988887653 3 3467899999999999999999774
No 197
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.01 E-value=1.8e-05 Score=63.01 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=53.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCc--c--cCC---HHHHhhcCceEEEccCCh
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT--V--GGS---PAEVIKKCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~--~--~~~---~~~~~~~~dvii~~v~~~ 67 (257)
+++.|+|. |.+|..++..|.+.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 47899995 9999999999999999999999999988776542 221 1 122 236678999999999977
Q ss_pred H
Q 025163 68 A 68 (257)
Q Consensus 68 ~ 68 (257)
.
T Consensus 109 ~ 109 (194)
T cd01078 109 V 109 (194)
T ss_pred c
Confidence 6
No 198
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.00 E-value=1.6e-05 Score=68.23 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=48.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHH----HHH----CC----CcccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDE----LVA----HG----ATVGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~----l~~----~g----~~~~~~~~~~~~~~dvii~~v 64 (257)
+||+|||+|.||..++..++..| .+|.++|+++++++. +.. .+ +....+++ ++++||+||++.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 68999999999999999999988 689999998875432 111 11 12234555 679999999998
No 199
>PRK11579 putative oxidoreductase; Provisional
Probab=98.00 E-value=4.9e-05 Score=66.09 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=78.1
Q ss_pred CeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~-- 72 (257)
+||||||+|.||.. .+..+.+. +.+++ ++|+++++.. .+. +....+|++++++ +.|+|++|+|+....+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 48999999999984 56666654 56754 6799877654 222 4567789999985 57999999999888776
Q ss_pred HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163 73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN 117 (257)
Q Consensus 73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~ 117 (257)
.....|.+ +++-|+......+ .+....++++-+ ...+.+++++++
T Consensus 83 ~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~ 138 (346)
T PRK11579 83 AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLA 138 (346)
T ss_pred HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHh
Confidence 44466766 4578877654322 222233444432 345677888876
No 200
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.00 E-value=1.9e-05 Score=69.20 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=55.0
Q ss_pred eEEEEcCChhHHHHHHHHHHC-C--CeEEEEcCCchhHHHHHH----C--C---CcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRN-G--FKVTVWNRTLSKCDELVA----H--G---ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~-g--~~V~~~~r~~~~~~~l~~----~--g---~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
+++|||+|..+......+... . .+|.+|+|++++.+.+.+ . | +.++.|++++++++|+|+.|+++.
T Consensus 157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 589999999999999999873 2 479999999999887654 2 2 446789999999999999999754
No 201
>PLN02306 hydroxypyruvate reductase
Probab=97.98 E-value=3.1e-05 Score=68.01 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=53.6
Q ss_pred CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchh-HHHH-HHCC------------CcccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSK-CDEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~~dvii~~v~ 65 (257)
.+|||||+|.+|..+|+.|. .-|.+|.+||+.... .+.. ...| .....+++|+++.||+|++++|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P 245 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV 245 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence 37999999999999999986 668999999987642 1211 1111 1223589999999999999999
Q ss_pred ChHHHHH
Q 025163 66 DPAAALS 72 (257)
Q Consensus 66 ~~~~~~~ 72 (257)
-......
T Consensus 246 lt~~T~~ 252 (386)
T PLN02306 246 LDKTTYH 252 (386)
T ss_pred CChhhhh
Confidence 7665544
No 202
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.97 E-value=2.5e-05 Score=66.84 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=57.6
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CC---CcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HG---ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
.++|||+|..+......+.+- -.+|.+|+|++++.+++.. .+ +..+.|.+++++++|+|+.|+|+..
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence 479999999999999999864 3479999999999888764 33 4678899999999999999999875
No 203
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.97 E-value=2.3e-05 Score=67.35 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=47.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHH--HH--HH----CC----CcccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD--EL--VA----HG----ATVGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~--~l--~~----~g----~~~~~~~~~~~~~~dvii~~v 64 (257)
+||+|||+|.||..+|..++..|+ +|.++|+++++.+ .+ .. .+ +....+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 489999999999999999999995 8999999988542 11 11 11 2223465 5678999999977
No 204
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.97 E-value=2.6e-05 Score=67.39 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHH----CC--CcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HG--ATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
+++|||+|..+......+..- . .+|.+|+|++++.+++.+ .+ +..+.+++++++++|+|+.|+++.
T Consensus 131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK 204 (346)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence 589999999999988877753 2 479999999999887654 23 345789999999999999999864
No 205
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.97 E-value=0.00017 Score=60.94 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=62.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchh--HHHHHHCCCcc-cCCHHHHhh-----cCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSK--CDELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~~ 70 (257)
+||+|||+|.+|+.+...+.+. +.++. ++|+++++ ++..++.|+.. ..+.+++++ +.|+||.++|...+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~ 84 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV 84 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence 4799999999999988888764 45644 56888764 34445568765 467888874 589999999998776
Q ss_pred HH--HHHhcCCcEEe
Q 025163 71 LS--AITSKGGHFLE 83 (257)
Q Consensus 71 ~~--~~~~~g~~~~~ 83 (257)
+. .+...|.+.++
T Consensus 85 e~a~~a~eaGk~VID 99 (302)
T PRK08300 85 RHAAKLREAGIRAID 99 (302)
T ss_pred HHHHHHHHcCCeEEE
Confidence 66 56677888887
No 206
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.95 E-value=0.00014 Score=65.60 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhH----HHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHHH-
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALS- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~- 72 (257)
+++.|+|.|.+|.++|..|++.|++|+++|++. +.+ +++.+.|+++. ....+...++|+||.++-.......
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 379999999999999999999999999999975 333 34444465432 2233455679999987643222111
Q ss_pred -HHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 73 -AITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 73 -~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
..+.+|+..+..+-.-.... ..+..-+.| |...+.+.+..+|+..+..+...|++|..
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~--~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~ 146 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFS--KAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP 146 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHH
Confidence 45567777766332111111 123333333 34566677888998887666666665543
No 207
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.93 E-value=0.00018 Score=52.16 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=54.1
Q ss_pred EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHH
Q 025163 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAAL 71 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~ 71 (257)
|-|+|.|.+|..+++.|.+.+.+|++.++++++.+.+.+.|..+. .+++.+ +++++.++++++++....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH
Confidence 568999999999999999977799999999999999999886432 122221 368899999998775543
No 208
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.93 E-value=2.9e-05 Score=66.53 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=48.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHH----HHC-----CCcccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~~dvii~~v~ 65 (257)
+||+|||+|.+|..+|..|...|. ++.++|++.++++-. ... ......+..+.+++||+||++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 589999999999999999999887 799999988765432 221 22233334456789999999764
No 209
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.93 E-value=0.00027 Score=56.62 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=52.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCC-CcccC-CH-HHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~~-~~-~~~~~~~dvii~~v~~~~~~~~ 72 (257)
.+|.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... .. .+.+.++|+||.|+.++..-..
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~ 86 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ 86 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence 3789999999999999999999999999987653 345555544 22211 11 2235789999999998876554
No 210
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.91 E-value=0.00021 Score=64.86 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=83.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-HHCCCcccC--CHHHHhhcCceEEEc--cCChHHHHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGM--LADPAAALSAIT 75 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~~~~ 75 (257)
+||.|+|+|..|.+++..|.+.|++|+++|++.....++ .+.|+.... ...+-+.++|+||.. +|.....-...+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~ 95 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ 95 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence 369999999999999999999999999999987665544 444776532 233445678988876 444333222455
Q ss_pred hcCCcEEeccccCCcc----cc-ccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 76 SKGGHFLEAPVSGSKQ----PA-ETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 76 ~~g~~~~~~pv~~~~~----~~-~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
..|+..+.-.-..... .. ...+.+-+.| |...+.+.+..+|+..+.++...|++|..
T Consensus 96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~p 159 (473)
T PRK00141 96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVP 159 (473)
T ss_pred HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCChh
Confidence 6777665522211000 00 0112333333 33456677889999988887777776644
No 211
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.90 E-value=0.00019 Score=64.55 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=83.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh----HHHHHHCCCccc--CCHHHHhhc-CceEEEcc--CChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVG--GSPAEVIKK-CTITIGML--ADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~----~~~l~~~g~~~~--~~~~~~~~~-~dvii~~v--~~~~~~~~ 72 (257)
+|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.|+... .+..+.... .|+||... |.......
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999986532 345666676553 344454444 89888764 43333333
Q ss_pred HHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 73 AITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 73 ~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
..+..|+.++.-+-..... ......-+.| |...+.+.+..+|+..+..+...|++|..
T Consensus 87 ~a~~~~i~v~~~~el~~~~--~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p 146 (447)
T PRK02472 87 KALEKGIPIITEVELAYLI--SEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP 146 (447)
T ss_pred HHHHCCCcEEeHHHHHHHh--cCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence 5566787776644221111 1122233333 34566677899999888877777876543
No 212
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.89 E-value=0.001 Score=53.88 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=87.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCc----------hhHHHHHHCC-CcccC-----CHHHHh-hcCceEEE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEVI-KKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~~-~~~dvii~ 62 (257)
++|.|.|+|++|..+++.|.+.|.. |.+.|.+. +.++...+.+ +.... +.+++. .++|+++-
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip 103 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP 103 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence 5899999999999999999999884 66678877 6666555443 21111 122332 47899999
Q ss_pred ccCChHHHHHHHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-C---C--hHHHHH
Q 025163 63 MLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-V---G--NGAKMK 136 (257)
Q Consensus 63 ~v~~~~~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~---g--~a~~~k 136 (257)
|.+.+...........+.++ +-+.+...-....++|+.-| +.++.+ . | ....+.
T Consensus 104 aA~~~~i~~~~a~~l~a~~V------------------~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~NaGGvi~s~~E 163 (217)
T cd05211 104 CALGNVIDLENAKKLKAKVV------------------AEGANNPTTDEALRILHERG--IVVAPDIVANAGGVIVSYFE 163 (217)
T ss_pred ccccCccChhhHhhcCccEE------------------EeCCCCCCCHHHHHHHHHCC--cEEEChHHhcCCCeEeEHHH
Confidence 98877554433332222221 11222222224555665555 222222 0 0 001222
Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163 137 L-------------VVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 172 (257)
Q Consensus 137 l-------------~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~ 172 (257)
+ +.+-+...+...+.+.+..+++.++++......+.
T Consensus 164 ~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a 212 (217)
T cd05211 164 WVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILA 212 (217)
T ss_pred hcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 2 22234445567788888888999988876665543
No 213
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.88 E-value=3.4e-05 Score=60.51 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=50.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~ 66 (257)
|.|+|+ |.+|..+++.|.++|++|+++.|++++.+. ..+++. ..+..++++++|+||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689996 999999999999999999999999999887 444332 12345667899999999874
No 214
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.00019 Score=63.88 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=85.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh----HHHHHHCCCcccC--CHHHHhhcCceEEEc--cCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVGG--SPAEVIKKCTITIGM--LADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~ 72 (257)
|||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ...+...++.+.. ...+....+|+|+.. +|.....-.
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence 68999999999999999999999999999976655 1223344544322 222556788999986 343333222
Q ss_pred HHHhcCCcEEec-cccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHH
Q 025163 73 AITSKGGHFLEA-PVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAK 134 (257)
Q Consensus 73 ~~~~~g~~~~~~-pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~ 134 (257)
.....|+.++.- -.+-... ...+.+-+.| |...+-..+..+|+..|.++...|++|....
T Consensus 88 ~A~~~gi~i~~dieL~~r~~--~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l 150 (448)
T COG0771 88 AAKAAGIEIIGDIELFYRLS--GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL 150 (448)
T ss_pred HHHHcCCcEEeHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence 455677766541 0000000 1222233444 3345566789999999999888888887654
No 215
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.87 E-value=4.1e-05 Score=67.12 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=52.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc---c---CCHHHHhhcCceEEEccC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~~dvii~~v~ 65 (257)
++.|||+|.+|...++.+...|.+|+++||++++++.+... +... . .++.+.++++|+||.|++
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 68999999999999999999999999999999998887654 3211 1 234567789999999974
No 216
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.86 E-value=4.6e-05 Score=65.16 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~-------g~~~~~~~~~~~~~~dvii~~v~ 65 (257)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++- +... .+....++++ ++++|+||++.-
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence 699999999999999999998875 79999998875432 2221 1222356665 689999999764
No 217
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.85 E-value=0.00012 Score=67.87 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=56.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAAL 71 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~ 71 (257)
+|-|+|+|.+|..+++.|.++|++|+++|.|+++++++++.|.... ++++ ++ ++++|.++++++++....
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 4789999999999999999999999999999999999998875431 2222 11 358999999999876543
No 218
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.85 E-value=0.0003 Score=63.60 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=82.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCccc--CCHHHHhhcCceEEEcc--CChHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVG--GSPAEVIKKCTITIGML--ADPAAAL 71 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v--~~~~~~~ 71 (257)
.||+|+|.|..|.++|+.|.+.|++|+++|+++. ..+++.+.|+... ....+.+.++|+||.+. |.....-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 3799999999999999999999999999998753 2245667787653 22334457899998863 2221212
Q ss_pred HHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 72 SAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 72 ~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
...+..|+.+++-+...... ...+.+-+.| |...+.+.+..+|+..+.++...|++|..
T Consensus 95 ~~a~~~~i~i~s~~e~~~~~--~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p 155 (458)
T PRK01710 95 VKAKEEGAYITSEMEEFIKY--CPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTP 155 (458)
T ss_pred HHHHHcCCcEEechHHhhhh--cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChh
Confidence 24556787776543221110 1123333333 34566677889999888766545556544
No 219
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.85 E-value=4.1e-05 Score=65.24 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=46.4
Q ss_pred EEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH----HHHC----C----CcccCCHHHHhhcCceEEEccC
Q 025163 3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH----G----ATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~----l~~~----g----~~~~~~~~~~~~~~dvii~~v~ 65 (257)
|+|||+|.||..+|..|+..|+ +|+++|+++++.+. +.+. + +....+. +.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998876 99999999875431 2221 1 1223454 45789999999874
No 220
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.83 E-value=0.00016 Score=58.02 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=59.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHH----HHCC--Cc-------cc-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDEL----VAHG--AT-------VG- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l----~~~g--~~-------~~- 47 (257)
||.|||+|.+|+.++.+|++.|. +++++|.+. .|++.+ .+.+ +. +.
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~ 102 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTA 102 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCH
Confidence 79999999999999999999996 799999872 222222 2211 11 11
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
.+..+.++++|+||.|+.+...... .....++.++.+...
T Consensus 103 ~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~ 145 (202)
T TIGR02356 103 ENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVV 145 (202)
T ss_pred HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1234567899999999877655333 556678888886654
No 221
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.83 E-value=0.0001 Score=64.11 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=56.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-----C---Cccc-CCHHHHhhcCceEEEccCChH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-----G---ATVG-GSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~~~~~dvii~~v~~~~ 68 (257)
|||+|||+ |.+|..+.+.|.++ ++++. ++++..+.-+.+.+. + .... .+.++..+++|++|+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 79999998 99999999999987 56777 556544322222211 1 1111 245566568999999999987
Q ss_pred HHHH--HHHhcCCcEEe
Q 025163 69 AALS--AITSKGGHFLE 83 (257)
Q Consensus 69 ~~~~--~~~~~g~~~~~ 83 (257)
..+. .+...|..++|
T Consensus 81 s~~~~~~~~~~G~~VID 97 (346)
T TIGR01850 81 SAELAPELLAAGVKVID 97 (346)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 7665 44456777777
No 222
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.82 E-value=5.4e-05 Score=63.91 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=52.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-C----CcccC---CHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G----ATVGG---SPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g----~~~~~---~~~~~~~~~dvii~~v~~~~ 68 (257)
++.|||+|.+|.+++..|.+.|. +|++++|++++.+.+.+. + +.... +..+...++|+||-|+|...
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 58899999999999999999996 699999999999988763 1 11111 22244578999999999753
No 223
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.81 E-value=6.5e-05 Score=64.48 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=52.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~ 65 (257)
|||.|.|+ |.+|..+++.|.++||+|++.+|++++...+...|+... .++.++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 89999985 999999999999999999999999877665555554321 234567789999998764
No 224
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.81 E-value=0.00013 Score=71.03 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=65.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-Ce-------------EEEEcCCchhHHHHHHC--C---Ccc-cCCHHHHh---hcCc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT 58 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~~d 58 (257)
||+|||+|.||...+..|++.. .+ |++.|+++++++.+.+. + +.+ ..+.+++. +++|
T Consensus 571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D 650 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD 650 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence 7999999999999999999753 23 89999999998888763 4 233 45665554 6799
Q ss_pred eEEEccCChHHHHH--HHHhcCCcEEecc
Q 025163 59 ITIGMLADPAAALS--AITSKGGHFLEAP 85 (257)
Q Consensus 59 vii~~v~~~~~~~~--~~~~~g~~~~~~p 85 (257)
+|++|+|....... .....|.++++..
T Consensus 651 aVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 651 VVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred EEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 99999999877665 4556788887754
No 225
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.81 E-value=0.00017 Score=62.31 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=66.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--Ce-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCC----hHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~----~~~~~~ 72 (257)
.||+|||+ .||...+..+.+.. .+ |.++|+++++.+++++. |+...+|.+|++++.|++++++|+ ....+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 48999999 78999999998754 56 55679999999988774 887889999999888888888864 233333
Q ss_pred --HHHhcCCc-EEecccc
Q 025163 73 --AITSKGGH-FLEAPVS 87 (257)
Q Consensus 73 --~~~~~g~~-~~~~pv~ 87 (257)
.+...|.+ +++-|+.
T Consensus 83 a~~aL~aGkHVL~EKPla 100 (343)
T TIGR01761 83 ARALLARGIHVLQEHPLH 100 (343)
T ss_pred HHHHHhCCCeEEEcCCCC
Confidence 45567776 5678875
No 226
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.80 E-value=0.00019 Score=62.21 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=59.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEEE-EcCCchhHHHHHH-------------------CCCcccCCHHHHhhcCce
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (257)
+||+|+|+|.||..+++.+.+. +++|.. ++++++....+.+ .++.+..+++++..++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5899999999999999998865 466554 4666654444332 133445567777788999
Q ss_pred EEEccCChHHHHH--HHHhcCCcEEe
Q 025163 60 TIGMLADPAAALS--AITSKGGHFLE 83 (257)
Q Consensus 60 ii~~v~~~~~~~~--~~~~~g~~~~~ 83 (257)
||.|+|.....+. .....|...++
T Consensus 82 VIdaT~~~~~~e~a~~~~~aGk~VI~ 107 (341)
T PRK04207 82 VVDATPGGVGAKNKELYEKAGVKAIF 107 (341)
T ss_pred EEECCCchhhHHHHHHHHHCCCEEEE
Confidence 9999998876665 45556766655
No 227
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.77 E-value=6e-05 Score=62.99 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=49.3
Q ss_pred EEEEcC-ChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHH-------C----CCcccCCHHHHhhcCceEEEcc
Q 025163 3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-------H----GATVGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 3 I~iIG~-G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~-------~----g~~~~~~~~~~~~~~dvii~~v 64 (257)
|+|||+ |.||..++..|+..| .+|.++|+++++++.... . .+..++|+.++++++|+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999988 689999999876544322 1 2234566678899999999965
No 228
>PRK10206 putative oxidoreductase; Provisional
Probab=97.76 E-value=0.00013 Score=63.37 Aligned_cols=118 Identities=13% Similarity=0.187 Sum_probs=76.8
Q ss_pred CeEEEEcCChhHH-HHHHHHHH--CCCeE-EEEcCCchhHHHHHHCC-CcccCCHHHHhh--cCceEEEccCChHHHHH-
Q 025163 1 MEVGFLGLGIMGK-AISMNLLR--NGFKV-TVWNRTLSKCDELVAHG-ATVGGSPAEVIK--KCTITIGMLADPAAALS- 72 (257)
Q Consensus 1 mkI~iIG~G~mG~-~la~~L~~--~g~~V-~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~~dvii~~v~~~~~~~~- 72 (257)
+||||||+|.++. .....+.. .+.+| .++|+++++.+...+.+ ....+|.+++++ +.|+|++|+|+....+.
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 4899999999775 33454533 25665 46899876543233333 567789999985 57999999999988776
Q ss_pred -HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163 73 -AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV 118 (257)
Q Consensus 73 -~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~ 118 (257)
.....|.+ +++-|+......+. +....++++-+ ...+.+++++++.
T Consensus 82 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~ 139 (344)
T PRK10206 82 KRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES 139 (344)
T ss_pred HHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc
Confidence 44456665 67888876654332 22233444432 2446678888764
No 229
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.76 E-value=0.00041 Score=62.78 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=76.6
Q ss_pred CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEcc--CChHHHHHHHH
Q 025163 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--ADPAAALSAIT 75 (257)
Q Consensus 1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v--~~~~~~~~~~~ 75 (257)
++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.|.+.|+.... ...+.+.++|+||.+- |.....-....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 47999999999999 89999999999999997643 34456666776532 2234456789888763 43322222456
Q ss_pred hcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163 76 SKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK 121 (257)
Q Consensus 76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~ 121 (257)
.+|+.+++-+-...... ...+..-+.| |...+...+..+|+..|.
T Consensus 88 ~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 88 ELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 67887776443321111 1113333333 334556678889988874
No 230
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.76 E-value=0.00022 Score=64.81 Aligned_cols=131 Identities=23% Similarity=0.229 Sum_probs=81.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCH-HHHhhcCceEEEccC--ChHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSP-AEVIKKCTITIGMLA--DPAAALSA 73 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~-~~~~~~~dvii~~v~--~~~~~~~~ 73 (257)
+|.|||.|..|..+|..|.++|++|+++|+++. ..+.+.+.|+...... .+...++|+||++.- ........
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence 699999999999999999999999999996542 2244666687654211 113356899998752 22222224
Q ss_pred HHhcCCcEEeccccCCccc--cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 74 ITSKGGHFLEAPVSGSKQP--AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 74 ~~~~g~~~~~~pv~~~~~~--~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
.+..|+.++.-+-...... ....+..-+.| |...+...+..+|+..+.++...|++|..
T Consensus 98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~ 160 (480)
T PRK01438 98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP 160 (480)
T ss_pred HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence 4566776655432211110 01122333333 34566677899999988887777776644
No 231
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.75 E-value=0.00021 Score=66.74 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=58.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~~ 72 (257)
++|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+. ++++ ++ ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 36889999999999999999999999999999999999998875431 2222 11 4689999999999866544
No 232
>PRK15076 alpha-galactosidase; Provisional
Probab=97.74 E-value=4.6e-05 Score=68.00 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=49.7
Q ss_pred CeEEEEcCChhHHHHHH--HHH----HCCCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~--~L~----~~g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~ 62 (257)
|||+|||+|+||...+. .++ -.+.+|+++|+++++++.... .+ +..++|..++++++|+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999966655 554 135689999999988663211 12 3346687899999999999
Q ss_pred ccCCh
Q 025163 63 MLADP 67 (257)
Q Consensus 63 ~v~~~ 67 (257)
++-.+
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 97654
No 233
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.73 E-value=0.00032 Score=54.83 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=57.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---h---------------hHHH----HHHC--CCcc--------cC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---S---------------KCDE----LVAH--GATV--------GG 48 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---~---------------~~~~----l~~~--g~~~--------~~ 48 (257)
||.|||+|.+|+.++..|++.|. +++++|.+. + |.+. +.+. .++. ..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 68999999999999999999997 599998875 1 2221 1111 1111 12
Q ss_pred CHHHHhhcCceEEEccCChHHHHH---HHHhc-CCcEEeccc
Q 025163 49 SPAEVIKKCTITIGMLADPAAALS---AITSK-GGHFLEAPV 86 (257)
Q Consensus 49 ~~~~~~~~~dvii~~v~~~~~~~~---~~~~~-g~~~~~~pv 86 (257)
+..+.++++|+||.|+-+...... ..... ++.++.+..
T Consensus 81 ~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~ 122 (174)
T cd01487 81 NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASG 122 (174)
T ss_pred hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEeh
Confidence 345677899999999777655432 33333 788777643
No 234
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.72 E-value=0.00015 Score=53.22 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=54.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC-CCeEEEE-cCCchhHHHHHHCCCcc------cCCHHHH-hhcCceEEEccCChHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHGATV------GGSPAEV-IKKCTITIGMLADPAAAL 71 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~-g~~V~~~-~r~~~~~~~l~~~g~~~------~~~~~~~-~~~~dvii~~v~~~~~~~ 71 (257)
||+|||+ |.+|..++..|.+. ++++..+ +++.++.+.+...+-.. ..+..+. ..++|+||+|+|+....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 6899995 99999999999985 7776665 66554444444332111 1111111 248999999999998877
Q ss_pred H---HH--HhcCCcEEecc
Q 025163 72 S---AI--TSKGGHFLEAP 85 (257)
Q Consensus 72 ~---~~--~~~g~~~~~~p 85 (257)
. .. ...|..++|+.
T Consensus 81 ~~~~~~~~~~~g~~viD~s 99 (122)
T smart00859 81 IAPLLPKAAEAGVKVIDLS 99 (122)
T ss_pred HHHHHHhhhcCCCEEEECC
Confidence 4 12 24567777744
No 235
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=97.71 E-value=0.0005 Score=61.68 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=81.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HH----HHH-HCCCccc--CCHHHHhhcCceEEEcc--CChHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD----ELV-AHGATVG--GSPAEVIKKCTITIGML--ADPAAAL 71 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~----~l~-~~g~~~~--~~~~~~~~~~dvii~~v--~~~~~~~ 71 (257)
||.|||.|..|.++|+.|.+.|++|+++|.++.. .+ .+. ..|+... .+ .+.+.++|+||... |.....-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 6899999999999999999999999999976542 21 122 2476543 23 34457889888753 4332222
Q ss_pred HHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 72 SAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 72 ~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
...+..|+.++.-+-...... ..+..-+.| |...+...+..+|+..+.++...|++|..
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 255677877766442211111 223333333 34566677889999888776666666654
No 236
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.71 E-value=6.9e-05 Score=64.10 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=47.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCc--hhHHH----HHH----CCC--c--ccCCHHHHhhcCceEEEc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTL--SKCDE----LVA----HGA--T--VGGSPAEVIKKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~--~~~~~----l~~----~g~--~--~~~~~~~~~~~~dvii~~ 63 (257)
|||+|||+ |.+|..++..|+..|+ +|+++||++ ++++. +.+ .+. . ...+. +.++++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 89999998 9999999999999987 499999954 43321 111 121 2 23354 458899999999
Q ss_pred cCC
Q 025163 64 LAD 66 (257)
Q Consensus 64 v~~ 66 (257)
+..
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 864
No 237
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.71 E-value=0.0015 Score=52.44 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=74.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCC-Ccc---cCCHHHHhhcCceEEEccCChHHHHH---H
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATV---GGSPAEVIKKCTITIGMLADPAAALS---A 73 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g-~~~---~~~~~~~~~~~dvii~~v~~~~~~~~---~ 73 (257)
++.|||.|.+|..-++.|.+.|.+|++++.+.. .++.+.+.| +.. .... +.+.++++||.|+.+...... .
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~-~dl~~~~lVi~at~d~~ln~~i~~~ 89 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDA-DILEGAFLVIAATDDEELNRRVAHA 89 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCH-HHhCCcEEEEECCCCHHHHHHHHHH
Confidence 689999999999999999999999999987654 456666654 322 1132 345789999999888744333 3
Q ss_pred HHhcCCcE--EeccccCC---ccccccCcEEEEec--C-ChhhHHHHHHHHHHh
Q 025163 74 ITSKGGHF--LEAPVSGS---KQPAETGQLVILSA--G-EKALYDEAISALNVI 119 (257)
Q Consensus 74 ~~~~g~~~--~~~pv~~~---~~~~~~~~~~~~~~--g-~~~~~~~~~~~l~~~ 119 (257)
....++.+ .|.|-.+. |.....+.+.+.++ | ++.....+++-++.+
T Consensus 90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETL 143 (205)
T ss_pred HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHh
Confidence 44556544 55553222 34455566655443 3 444444455555444
No 238
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.71 E-value=0.0011 Score=59.77 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=83.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh--HHHHHH--CCCcccC--CHHHHhhcCceEEEcc--CChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGML--ADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~ 72 (257)
++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .+++.+ .|+.... ...+...++|+||... |.....-.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence 37999999999999999999999999999976543 344544 3665422 1233446889999864 33222222
Q ss_pred HHHhcCCcEEeccccCCccccc-cCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 73 AITSKGGHFLEAPVSGSKQPAE-TGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 73 ~~~~~g~~~~~~pv~~~~~~~~-~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
.....|+.+++-+-........ ..+..-+.| |...+...+..+|+..+..++..|++|..
T Consensus 86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~ 148 (445)
T PRK04308 86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148 (445)
T ss_pred HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHH
Confidence 4556787776644221111101 123333333 34566677899999988877777877754
No 239
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.71 E-value=0.00026 Score=57.88 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=52.7
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG-------GSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~ 66 (257)
|.|+|+ |.+|..++..|.+.+++|.+..|++. ..+.+.+.|+.+. .++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789986 99999999999999999999999864 4677888887532 2445577899999999983
No 240
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.71 E-value=0.00066 Score=61.38 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=79.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEc--cCChH----HHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPA----AALSAIT 75 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~--v~~~~----~~~~~~~ 75 (257)
||.|||.|..|.+.|..|.+.|++|+++|+++.....+.+.|+.......+.+.++|+||.. +|... ..-....
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~ 90 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR 90 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence 69999999999999999999999999999876655556666776543222335678988863 23221 1111344
Q ss_pred hcCCcEEeccccCCccc---cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 76 SKGGHFLEAPVSGSKQP---AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 76 ~~g~~~~~~pv~~~~~~---~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
..|+.+++-.-...... ......+-+.| |...+.+.+..+|+..+.++...|++|..
T Consensus 91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gnig~~ 152 (460)
T PRK01390 91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTA 152 (460)
T ss_pred HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCccchh
Confidence 56776666332111100 01122223333 34556667888888877665544555543
No 241
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00055 Score=57.46 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=78.0
Q ss_pred eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||.|. +|.+++..|...|..|+++++.. .++.+.++++|+||.+++.+.......-..|..
T Consensus 160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gav 225 (286)
T PRK14175 160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAV 225 (286)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcE
Confidence 789999988 99999999999999999998742 257788899999999999876554434456778
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+... ..|. ++ ||-+ ++.+++.-..+.. .-|.+|.-....+..|++.
T Consensus 226 VIDvGi~~~----~~gk---l~-GDvd-~~~~~~~a~~iTP---VPGGVGp~T~a~L~~n~~~ 276 (286)
T PRK14175 226 IIDVGNTPD----ENGK---LK-GDVD-YDAVKEIAGAITP---VPGGVGPLTITMVLNNTLL 276 (286)
T ss_pred EEEcCCCcC----CCCC---ee-cCcc-HHHHHhhccCcCC---CCCCCHHHHHHHHHHHHHH
Confidence 888766431 1222 22 3322 2334443332222 2244677677777777663
No 242
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.70 E-value=0.00019 Score=62.25 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=54.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-----CC--cccCCHHH-HhhcCceEEEccCChHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~-~~~~~dvii~~v~~~~~~ 70 (257)
|||+|||+ |.+|..+++.|.++ +++++.+.++.+..+.+.+. +. ....+.++ ..+++|+||+|+|+....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 58999997 99999999999987 56765543333332233221 11 01222222 446899999999998776
Q ss_pred HH--HHHhcCCcEEec
Q 025163 71 LS--AITSKGGHFLEA 84 (257)
Q Consensus 71 ~~--~~~~~g~~~~~~ 84 (257)
+. .+...|.+.+|.
T Consensus 83 ~~v~~a~~aG~~VID~ 98 (343)
T PRK00436 83 DLAPQLLEAGVKVIDL 98 (343)
T ss_pred HHHHHHHhCCCEEEEC
Confidence 65 444578888873
No 243
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.69 E-value=0.00012 Score=62.32 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=48.8
Q ss_pred EEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC--------C-Ccc--cCCHHHHhhcCceEEEccCCh
Q 025163 3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G-ATV--GGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~--------g-~~~--~~~~~~~~~~~dvii~~v~~~ 67 (257)
|+|||+|.+|..+|..|+..| ++++++|+++++++..... . .+. ..+ .+.+++||+||++...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 689999999999999999988 6899999998876544331 1 111 234 35778999999998643
No 244
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.68 E-value=0.00031 Score=60.77 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=60.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---------------------hhHHH----HHHC--CCcc-------
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---------------------SKCDE----LVAH--GATV------- 46 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---------------------~~~~~----l~~~--g~~~------- 46 (257)
+|.|||+|.+|+.++..|++.|. +++++|++. .|++. +.+. .+.+
T Consensus 26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~ 105 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDV 105 (338)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999997 799999874 12222 2222 1211
Q ss_pred -cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 47 -GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 47 -~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
..+.+++++++|+||.|+.+...... .....++.++.+...
T Consensus 106 ~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~ 150 (338)
T PRK12475 106 TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCV 150 (338)
T ss_pred CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 12456778899999999976654332 455678888776544
No 245
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.67 E-value=0.00078 Score=60.72 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=81.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHH--CCCcccC--CHHHHhhcCceEEEc--cCChHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGM--LADPAAALSA 73 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~~ 73 (257)
.|.|||.|..|.++|+.|.+.|++|+++|.++. ..+.|.+ .|+.... ...+.+.++|+||.. +|.....-..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~ 87 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA 87 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence 488999999999999999999999999997643 2344655 3765532 123445678988775 3433222224
Q ss_pred HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163 74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA 133 (257)
Q Consensus 74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~ 133 (257)
.+..|+.+++-.-...... .....-+.| |...+...+..+|+..+.++...|++|...
T Consensus 88 a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 88 AAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred HHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 5667877776331111111 123333333 334556778889998887766666666553
No 246
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.65 E-value=0.00026 Score=66.31 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=57.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~~ 72 (257)
+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+. ++++-+ ++++|.+++++++++....
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 5889999999999999999999999999999999999998876432 233211 3589999999988766544
No 247
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.63 E-value=0.0016 Score=59.50 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=81.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHC--CCcccC--CHHHHhhcCceEEEc--cCChH----H
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADPA----A 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~~dvii~~--v~~~~----~ 69 (257)
+|.|||.|..|.++|+.|.+.|++|+++|.+.. ..+.|.+. |+.... ...+.++++|+||.. +|... .
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~ 88 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP 88 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence 699999999999999999999999999997543 33445555 444321 233455689999986 34321 1
Q ss_pred HHHHHHhcCCcEEeccccCCccc-----c-ccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHH
Q 025163 70 ALSAITSKGGHFLEAPVSGSKQP-----A-ETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAK 134 (257)
Q Consensus 70 ~~~~~~~~g~~~~~~pv~~~~~~-----~-~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~ 134 (257)
.-...+..++.++.-+-.-.... . ...+..-+.| |...+...+..+|+..+.++...|+++....
T Consensus 89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni~~~~~ 161 (498)
T PRK02006 89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNISPAAL 161 (498)
T ss_pred HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCCCHHHH
Confidence 11134556776664221100000 0 0113333333 3456677889999999988877787765543
No 248
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.63 E-value=0.00058 Score=51.52 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=59.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCcc-------c-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GATV-------G- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~~-------~- 47 (257)
||.|||+|.+|..++++|++.|. +++++|.+.= |.+.+++ . .+++ .
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999997 6999986521 2222211 1 1111 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+..++.|+||.|+.+...... .....++.|+++...+
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1123567899999999988654333 5667788898877655
No 249
>PLN02602 lactate dehydrogenase
Probab=97.63 E-value=0.00016 Score=62.75 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC----C-Cccc--CCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----G-ATVG--GSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~----g-~~~~--~~~~~~~~~~dvii~~v~ 65 (257)
+||+|||+|.+|..+|..|...+. ++.++|+++++++- +... + ..+. .+.++ +++||+||++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence 389999999999999999998875 79999998875432 2221 1 2332 34544 789999999853
No 250
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.63 E-value=0.031 Score=48.79 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=138.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----C--------------------CcccCCHHHHhh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK 55 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g--------------------~~~~~~~~~~~~ 55 (257)
+|-|+|+|..+--+|..|.+.+. .|-+.+|...+.+++.+. + -....+.+++..
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g 82 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG 82 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence 58999999999999999998875 699999987776665331 1 012346777777
Q ss_pred cCceEEEccCChHHHHH------------------------------HHHhcC--CcEEeccc-cCCc------------
Q 025163 56 KCTITIGMLADPAAALS------------------------------AITSKG--GHFLEAPV-SGSK------------ 90 (257)
Q Consensus 56 ~~dvii~~v~~~~~~~~------------------------------~~~~~g--~~~~~~pv-~~~~------------ 90 (257)
+=|.+|+|||.++-... .+.+.+ +.+++-.. .|..
T Consensus 83 ~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vl 162 (429)
T PF10100_consen 83 EWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVL 162 (429)
T ss_pred cccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcceeh
Confidence 88999999999877666 222222 33333110 0000
Q ss_pred cccccCcEEEEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHH-----------------HHH------------
Q 025163 91 QPAETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKM-----------------KLV------------ 138 (257)
Q Consensus 91 ~~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~-----------------kl~------------ 138 (257)
..+-+.. +.+| ++....+++..+++.++..+..+..+=.|+.. +.+
T Consensus 163 t~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYK 240 (429)
T PF10100_consen 163 TTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYK 240 (429)
T ss_pred hhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEe
Confidence 0111111 3333 34566788999999998776555542222111 111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-------CCchhhhcc--CC-------------ccc
Q 025163 139 -------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGK--GP-------------TML 189 (257)
Q Consensus 139 -------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-------~~s~~~~~~--~~-------------~~~ 189 (257)
.-.++.-|.....|++.+..+.|+++=.+.+++.... ....-.+++ .+ .++
T Consensus 241 L~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiL 320 (429)
T PF10100_consen 241 LFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSIL 320 (429)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhhe
Confidence 1133445677889999999999998777777776521 000000000 00 011
Q ss_pred CCCCC-C-------Cc----------------ccchH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163 190 QSNYA-P-------AF----------------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS 235 (257)
Q Consensus 190 ~~~~~-~-------~~----------------~~~~~-~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 235 (257)
-.-|+ | .| .+.-| ..| ++.+.-.++.+++++|..+...+.++...+
T Consensus 321 IDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 321 IDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred eCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 01111 0 01 12222 223 588899999999999999999999988765
No 251
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.60 E-value=0.0015 Score=50.15 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=49.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC-CcccC-CHH-HHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SPA-EVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g-~~~~~-~~~-~~~~~~dvii~~v~~~~~~~~ 72 (257)
+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +.... .+. +-++++|+||.++.++..-..
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~ 86 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM 86 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence 78999999999999999999999999996 44445555432 22111 111 125789999999887765444
No 252
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.57 E-value=0.00019 Score=61.22 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=47.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-------CCcccCCHHHHhhcCceEEEccC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-------GATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~~dvii~~v~ 65 (257)
||+|||+|.+|..+|..|+..+. ++.++|+++++++ +|... ..+...+..+.+++||+||++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998875 7999999876543 33331 11222233466789999999864
No 253
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.57 E-value=0.00033 Score=57.15 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=50.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dvi 60 (257)
++|+|.|.|++|..+++.|.+.|..|+ +.|. +.+.+.++.+. | .... ++++.. .++|++
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl 110 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL 110 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence 589999999999999999999999988 5676 56666655443 2 1111 233332 478999
Q ss_pred EEccCChHHHHH
Q 025163 61 IGMLADPAAALS 72 (257)
Q Consensus 61 i~~v~~~~~~~~ 72 (257)
+-|.+.......
T Consensus 111 ip~a~~~~i~~~ 122 (227)
T cd01076 111 IPAALENQITAD 122 (227)
T ss_pred EecCccCccCHH
Confidence 999876655444
No 254
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=97.55 E-value=0.0011 Score=59.82 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=75.1
Q ss_pred eEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEc--cCChHHHHHHHHh
Q 025163 2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGM--LADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~--v~~~~~~~~~~~~ 76 (257)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.|.+.|+.... ...+.+.++|+||.+ +|.....-.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 5889999999998 99999999999999997653 34556666876543 223445678988875 3433222224556
Q ss_pred cCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK 121 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~ 121 (257)
.|+.+++-+-...... ...+..-+.| |...+...+..+|+..|.
T Consensus 81 ~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 7877776443321111 1123333333 344556678888888774
No 255
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.54 E-value=0.00031 Score=48.13 Aligned_cols=44 Identities=30% Similarity=0.359 Sum_probs=37.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
.+++|+|.|.+|..++..|.+. +.+|.+||| |++|.|++.+...
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV 68 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence 3799999999999999999998 678999998 8888888765443
No 256
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.53 E-value=0.00037 Score=55.73 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~ 32 (257)
||+|+|+|.||+.++..|++.|. +++++|.+
T Consensus 23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999999999999999998 69999988
No 257
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.49 E-value=0.00097 Score=48.48 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=53.5
Q ss_pred CeEEEEc----CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163 1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI 74 (257)
Q Consensus 1 mkI~iIG----~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~ 74 (257)
.+|+||| .+.+|..+.++|.++|++|+.++.+.+.+. |.+...++.|.-...|++++++|.....+. .+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHH
Confidence 3699999 699999999999999999999987654332 778888898844789999999998766665 34
Q ss_pred HhcCCc
Q 025163 75 TSKGGH 80 (257)
Q Consensus 75 ~~~g~~ 80 (257)
...|+.
T Consensus 76 ~~~g~~ 81 (116)
T PF13380_consen 76 AALGVK 81 (116)
T ss_dssp HHHT-S
T ss_pred HHcCCC
Confidence 444543
No 258
>PRK05086 malate dehydrogenase; Provisional
Probab=97.49 E-value=0.00035 Score=59.81 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=47.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH---CCCeEEEEcCCchhH---HHHHHCC--Ccc----cCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+ |.+|.+++..|.. .+++++++||++..- .++...+ ..+ ..++.+.++++|+||+|.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 89999999 9999999998854 346899999985431 2343312 111 34656778899999999754
No 259
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.49 E-value=0.001 Score=60.05 Aligned_cols=130 Identities=19% Similarity=0.167 Sum_probs=81.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-H----HHHHHCCCcccC--CHH-----HHhhcCceEEEccC--Ch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGG--SPA-----EVIKKCTITIGMLA--DP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~~dvii~~v~--~~ 67 (257)
||.|||.|..|...|+.|.+.|++|+++|+++.. . ..+.+.|++... ... +...+.|+|+.... .+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 7999999999999999999999999999976432 2 235566765532 111 34567898887532 22
Q ss_pred HHHHHHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 68 AAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 68 ~~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
...-...+..|+.++.-........ ...+..-+.| |...+.+.+..+|+..+.++...|.+|..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~ 147 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYA 147 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChh
Confidence 2222245567877766443211110 1123333333 34556667889999888776666666644
No 260
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.43 E-value=0.0011 Score=54.08 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=59.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHH----HCC--Cc-------c-c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELV----AHG--AT-------V-G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~----~~g--~~-------~-~ 47 (257)
||.|||+|.+|+.++.+|++.|. +++++|.+.= |++.+. +.+ +. . .
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~ 102 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA 102 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence 79999999999999999999996 6888865431 222221 111 11 1 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+..+++|+||.|+.+...... .....++.++.+.+.+
T Consensus 103 ~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 103 ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 2334567889999999987765433 4556788888876544
No 261
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.42 E-value=0.0011 Score=57.48 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=59.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---------------------hhHHH----HHHCC--Cc-------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---------------------SKCDE----LVAHG--AT-------V 46 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---------------------~~~~~----l~~~g--~~-------~ 46 (257)
||.|||+|.+|+.++..|++.|. +++++|.+. .|.+. +++.+ +. .
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~ 105 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV 105 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999998 899999863 12222 22211 11 1
Q ss_pred -cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 47 -GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 47 -~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
..+..+.++++|+||.|+-+...... .....++.++.+.+.
T Consensus 106 ~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~ 150 (339)
T PRK07688 106 TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACV 150 (339)
T ss_pred CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeee
Confidence 12345677899999999887755433 445567777776544
No 262
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.41 E-value=0.00057 Score=61.11 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=56.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--------C--Ce-EEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCCh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADP 67 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~ 67 (257)
+||++||+|.||..++..|.++ | .+ +.+++|++++.+.+...+....++++++++ +.|+|+.|++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 3799999999999999888654 2 34 456688877654332224556778999885 479999998764
Q ss_pred HHHHH---HHHhcCCcEEe
Q 025163 68 AAALS---AITSKGGHFLE 83 (257)
Q Consensus 68 ~~~~~---~~~~~g~~~~~ 83 (257)
..... ..-..|.+++.
T Consensus 84 ~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 84 EPARELILKALEAGKHVVT 102 (426)
T ss_pred hHHHHHHHHHHHCCCeEEE
Confidence 33222 33355666554
No 263
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.41 E-value=0.0014 Score=52.87 Aligned_cols=84 Identities=20% Similarity=0.393 Sum_probs=56.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc------------------hhHHHHH----HC--CCcc--------cC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL------------------SKCDELV----AH--GATV--------GG 48 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~------------------~~~~~l~----~~--g~~~--------~~ 48 (257)
+|.|||+|.+|+.++..|++.|. +++++|.+. .|++.++ +. .+.+ ..
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~ 109 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKIDED 109 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHH
Confidence 69999999999999999999997 599998872 1222222 11 1111 11
Q ss_pred CHHHHhhcCceEEEccCChHHHHH---HHHhc-CCcEEecc
Q 025163 49 SPAEVIKKCTITIGMLADPAAALS---AITSK-GGHFLEAP 85 (257)
Q Consensus 49 ~~~~~~~~~dvii~~v~~~~~~~~---~~~~~-g~~~~~~p 85 (257)
+..+.++++|+||.|+-+...... ..... +..++.+.
T Consensus 110 ~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 110 NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 234567889999999876655332 44455 77777654
No 264
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.39 E-value=0.00054 Score=59.00 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=61.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHH--HHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA--LSAI 74 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~--~~~~ 74 (257)
++|.|+|+ |.||..+++.|.++ | .++++++|+.++++.+..+ +..-..++.+++.++|+|+.++..+... ....
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~ 235 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGVEIDPET 235 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCCcCCHHH
Confidence 36899998 89999999999864 5 5899999999888887654 2112235778888999999988664432 1112
Q ss_pred HhcCCcEEeccc
Q 025163 75 TSKGGHFLEAPV 86 (257)
Q Consensus 75 ~~~g~~~~~~pv 86 (257)
-.++..++|-.+
T Consensus 236 l~~~~~viDiAv 247 (340)
T PRK14982 236 LKKPCLMIDGGY 247 (340)
T ss_pred hCCCeEEEEecC
Confidence 245666776444
No 265
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.39 E-value=0.0013 Score=55.92 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=79.5
Q ss_pred eEEEEcCChhHHHHHHHHHH---CCCeEE-EEcCCchhHHHHHHC-CC---cccCCHHHHhhcC--ceEEEccCChHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-GA---TVGGSPAEVIKKC--TITIGMLADPAAAL 71 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~---~g~~V~-~~~r~~~~~~~l~~~-g~---~~~~~~~~~~~~~--dvii~~v~~~~~~~ 71 (257)
|+||+|+|.|+.-.++.|.- .+|.|+ +.+|+.+++..+++. ++ +...|.+|++++. |+|.+..|.++..+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e 87 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE 87 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence 78999999999999999974 367755 459999999888765 43 5677999999765 99999999999988
Q ss_pred H--HHHhcCC-cEEeccccCCcc-------ccccCcEEEEecCC---hhhHHHHHHHHH
Q 025163 72 S--AITSKGG-HFLEAPVSGSKQ-------PAETGQLVILSAGE---KALYDEAISALN 117 (257)
Q Consensus 72 ~--~~~~~g~-~~~~~pv~~~~~-------~~~~~~~~~~~~g~---~~~~~~~~~~l~ 117 (257)
. ....++- .+++-|+.-... .++...+.++.|-. -...+++++++.
T Consensus 88 vv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~ 146 (351)
T KOG2741|consen 88 VVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS 146 (351)
T ss_pred HHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh
Confidence 7 2222332 455666544433 22223344555432 233456777765
No 266
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.38 E-value=0.00053 Score=51.20 Aligned_cols=88 Identities=26% Similarity=0.372 Sum_probs=58.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCc-------c-
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GAT-------V- 46 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~-------~- 46 (257)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.= |.+.+++ . +.. .
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 379999999999999999999997 6999986521 1222211 1 111 1
Q ss_pred cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 47 GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 47 ~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
..+..+.++++|+||.|+-+...... .....+..++.+.+.+
T Consensus 83 ~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 83 EENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp HHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 12344667899999999887554433 5666788888766543
No 267
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.35 E-value=0.00038 Score=56.30 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=53.1
Q ss_pred eEEEEcCChhHHHHHHHHH--HCCCeEE-EEcCCchhHHHHHHCCC--cccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163 2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHGA--TVGGSPAEVIK--KCTITIGMLADPAAALS-- 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~--~~g~~V~-~~~r~~~~~~~l~~~g~--~~~~~~~~~~~--~~dvii~~v~~~~~~~~-- 72 (257)
+|+|||+|.+|..++..+. ..|+++. ++|+++++..... .|. ....++.+.++ +.|.+++|+|.....+.
T Consensus 86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~ 164 (213)
T PRK05472 86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVAD 164 (213)
T ss_pred EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHH
Confidence 7999999999999998643 4577755 4688876653222 122 22345666664 49999999998876553
Q ss_pred HHHhcCCc
Q 025163 73 AITSKGGH 80 (257)
Q Consensus 73 ~~~~~g~~ 80 (257)
.+...|+.
T Consensus 165 ~l~~~Gi~ 172 (213)
T PRK05472 165 RLVEAGIK 172 (213)
T ss_pred HHHHcCCC
Confidence 45566753
No 268
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.35 E-value=0.00083 Score=54.82 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=49.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCC----chhH-------HHHHHC-CC-cccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~----~~~~-------~~l~~~-g~-~~~~~~~~~~~~~dvii~~v 64 (257)
+||.|+|+|.+|..++..|.+.|. +|+++||+ .++. +.+.+. +. ....++.+.++++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 478999999999999999999996 59999998 4443 233322 11 11136768888999999999
Q ss_pred CCh
Q 025163 65 ADP 67 (257)
Q Consensus 65 ~~~ 67 (257)
|..
T Consensus 106 ~~G 108 (226)
T cd05311 106 RPG 108 (226)
T ss_pred CCC
Confidence 733
No 269
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=97.34 E-value=0.0019 Score=47.97 Aligned_cols=126 Identities=14% Similarity=0.143 Sum_probs=75.8
Q ss_pred EEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163 100 ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP 179 (257)
Q Consensus 100 ~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~ 179 (257)
+.+.||++..+.++++++.+|.+++.+.+ ..-.....+.-+..+....++..+..++++.|++.+...+++. |
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P 76 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P 76 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence 44555999999999999999999888866 5555666666666666777888899999999999955444333 2
Q ss_pred hhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163 180 MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 232 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 232 (257)
..+....++...+.....+....+.|...+.+..+...-..|-...+|+.+.+
T Consensus 77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~ 129 (132)
T PF10728_consen 77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR 129 (132)
T ss_dssp HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 22221222222221112233445667777777666654433566666655544
No 270
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0006 Score=57.27 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=50.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC----CCc-ccCCHHHH--hhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~~~--~~~~dvii~~v~~~ 67 (257)
++.|+|+|.++.+++..|++.| .+|+++||+.++.++|++. +.. ......+. ..++|+||=|+|..
T Consensus 128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 5899999999999999999999 5799999999999998764 211 11122221 22589999999976
No 271
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.33 E-value=0.0008 Score=56.36 Aligned_cols=96 Identities=24% Similarity=0.229 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCCCCCCCcccchH-----
Q 025163 132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLKHQ----- 202 (257)
Q Consensus 132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (257)
|+.+||++|-+.+.++++++|+..+++. .|++++++.++.. .+...|++++....-+..+|.++..-++..
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 6889999999999999999999999995 6888877766655 566666666544333333332211111111
Q ss_pred HH-HHHHHHHHHhhcCCCchHHHHHH
Q 025163 203 QK-DMRLALALGDENAVSMPIAAAAN 227 (257)
Q Consensus 203 ~k-d~~~~~~~a~~~g~~~p~~~~~~ 227 (257)
.| .-+...+.+-+.|+|+|+...++
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 11 23667888889999999987643
No 272
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.33 E-value=0.00033 Score=49.13 Aligned_cols=78 Identities=27% Similarity=0.311 Sum_probs=55.2
Q ss_pred eEEEEcCChhHHHHHHHHH-HCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163 2 EVGFLGLGIMGKAISMNLL-RNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~-~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~ 75 (257)
|+.|+|+|+.|.+++..+. ..|+. +.++|.++++.-+-. .|+.+..+.+++.+. .|+-++|||.....+. .+.
T Consensus 5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~ 83 (96)
T PF02629_consen 5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELV 83 (96)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHH
T ss_pred eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHH
Confidence 6899999999999986554 45765 666799988654221 266677688888776 9999999998776655 444
Q ss_pred hcCCc
Q 025163 76 SKGGH 80 (257)
Q Consensus 76 ~~g~~ 80 (257)
..|+.
T Consensus 84 ~~gIk 88 (96)
T PF02629_consen 84 EAGIK 88 (96)
T ss_dssp HTT-S
T ss_pred HcCCC
Confidence 45544
No 273
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.32 E-value=0.0011 Score=59.73 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=53.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--CCcc-c---CCHHH----HhhcCceEEEccCChH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-G---GSPAE----VIKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--g~~~-~---~~~~~----~~~~~dvii~~v~~~~ 68 (257)
++|.|+|+|.+|..+++.|.+.|++|+++++++++.+++.+. +... . ++.+. -++++|.++++++++.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 479999999999999999999999999999999999988775 3322 1 23322 2358999999888764
No 274
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.32 E-value=0.0017 Score=47.10 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=64.8
Q ss_pred cCChhHHHHHHHHHHC----CCe-EEEEcCC--chhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HHH
Q 025163 7 GLGIMGKAISMNLLRN----GFK-VTVWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 7 G~G~mG~~la~~L~~~----g~~-V~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~~ 75 (257)
|+|.||..++..|.+. +.+ +.+++|+ .+....-...+.....+++++++ +.|+||-|++.....+. .+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L 80 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKAL 80 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHH
Confidence 8999999999999987 455 4456887 11112122234567889999888 89999999776555443 444
Q ss_pred hcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163 76 SKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 125 (257)
Q Consensus 76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 125 (257)
.+|.+++.+-.. ... |...++++.++.+.-+.+++|
T Consensus 81 ~~G~~VVt~nk~-------------ala-~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 81 ERGKHVVTANKG-------------ALA-DEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HTTCEEEES-HH-------------HHH-SHHHHHHHHHHHHHHT-EEEE
T ss_pred HCCCeEEEECHH-------------Hhh-hHHHHHHHHHHHHHcCCEEEe
Confidence 677777553311 112 556777788887777766543
No 275
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.32 E-value=0.0034 Score=56.90 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=79.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-h---HHHHHHCCCcc-cCCHHHHhhcCceEEEcc--CChHHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-K---CDELVAHGATV-GGSPAEVIKKCTITIGML--ADPAAALSAI 74 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~---~~~l~~~g~~~-~~~~~~~~~~~dvii~~v--~~~~~~~~~~ 74 (257)
||+|+|+|.-|.+.++.|.+.|.+|+++|.++. . .++|.+.+... .....+.+.++|+||..- |.....-...
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~~~~a 89 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPEALAA 89 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHHHHHH
Confidence 799999999999999999999999999995432 2 22454433222 112234557889988863 4333322255
Q ss_pred HhcCCcEEecccc-CCc-c--ccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 75 TSKGGHFLEAPVS-GSK-Q--PAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 75 ~~~g~~~~~~pv~-~~~-~--~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
+..|+.++.-.-. ... . ........-+.| |...+...+..+|+..+.++...|++|..
T Consensus 90 ~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p 153 (468)
T PRK04690 90 AARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVP 153 (468)
T ss_pred HHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCCcc
Confidence 6777777653321 100 0 000112333333 33456677889999888777777777643
No 276
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.27 E-value=0.0052 Score=55.26 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=80.4
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchh--HHHHHHCCCcccCC--HHHHhhcCceEEEcc--CChHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVGGS--PAEVIKKCTITIGML--ADPAAALSA 73 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~~~--~~~~~~~~dvii~~v--~~~~~~~~~ 73 (257)
||.|||.|..|.+.++.|.+. |++|+++|.++.. .+.|.+ |+..... ..+.+.++|+||... |.....-..
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~~ 87 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQQ 87 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHHH
Confidence 689999999999999999988 5889999976432 234543 7665211 233457789888753 433222224
Q ss_pred HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163 74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA 133 (257)
Q Consensus 74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~ 133 (257)
...+|+.++.-+-...... ..+..-+.| |...+.+.+..+|+..+.++...|++|...
T Consensus 88 a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~ 147 (438)
T PRK04663 88 VLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPA 147 (438)
T ss_pred HHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHH
Confidence 5667877776432211111 123333333 344556678889998888776666676553
No 277
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.26 E-value=0.0011 Score=56.30 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=47.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCc---hhHHHHHH----CC--Ccc--c--C---CHHHHhhcCceEEEcc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVA----HG--ATV--G--G---SPAEVIKKCTITIGML 64 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~---~~~~~l~~----~g--~~~--~--~---~~~~~~~~~dvii~~v 64 (257)
++.|+|+|.+|.+++..|++.|.. |++++|++ ++.+++.+ .+ ... . . +..+.++.+|+||-|+
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence 478999999999999999999986 99999997 66666543 11 111 1 1 1223445789999999
Q ss_pred CCh
Q 025163 65 ADP 67 (257)
Q Consensus 65 ~~~ 67 (257)
|..
T Consensus 208 p~G 210 (289)
T PRK12548 208 LVG 210 (289)
T ss_pred CCC
Confidence 865
No 278
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.25 E-value=0.00082 Score=57.75 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=47.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCc--hhH----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKC----DELVAH------GATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~~dvi 60 (257)
+||+|||+ |.+|..++..|...|. ++.++|+++ +++ .++... +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999998874 799999964 222 222221 122334555778899999
Q ss_pred EEccC
Q 025163 61 IGMLA 65 (257)
Q Consensus 61 i~~v~ 65 (257)
|++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99864
No 279
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=97.25 E-value=0.0031 Score=50.35 Aligned_cols=89 Identities=19% Similarity=0.323 Sum_probs=59.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Cc-------cc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--AT-------VG 47 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~-------~~ 47 (257)
.||.|||+|.+|..++++|+..|. +++++|.+.= |.+. +++.+ +. ..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 379999999999999999999996 5988875421 1111 22211 11 12
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS 89 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~ 89 (257)
....+..++.|+||.|..+...... .....++.++.+.+.+.
T Consensus 102 ~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~ 146 (197)
T cd01492 102 EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGL 146 (197)
T ss_pred ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 2344567899999999876544332 55667888877766543
No 280
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.25 E-value=0.00059 Score=57.89 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=46.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHH----HHHHC------CCcccCC-HHHHhhcCceEEEcc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCD----ELVAH------GATVGGS-PAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~----~l~~~------g~~~~~~-~~~~~~~~dvii~~v 64 (257)
|||+|||+|.+|.++|..|...+ .++.++|+++++.+ +|... ......+ --+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 79999999999999999997665 48999999855432 23221 1222221 245678999999987
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.012 Score=50.48 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=56.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh-hcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI-KKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~-~~~dvii~~v~~~~~~~~ 72 (257)
+|+|+|+|.+|..-.+.....|.+|+.++|+++|.+..++.|+... .+..+.+ +.+|+|+.+++ ....+.
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~ 244 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP 244 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence 6899999999999888888899999999999999999999886422 1222333 23999999999 666666
No 282
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.24 E-value=0.00088 Score=57.18 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=46.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCch--hHHHHHHC----CCcc--c-CCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLS--KCDELVAH----GATV--G-GSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~--~~~~l~~~----g~~~--~-~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|||+ |.+|..+|..|...+. ++.++|++.. ...+|... .++. . +++.+.++++|+||++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 89999999 9999999999998884 7999998721 12233332 1221 1 2345778999999998643
No 283
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.21 E-value=0.0011 Score=57.35 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=55.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHCC--CcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+ |..|..+.+.|.+++|. +....++.+.-+.+.-.| +...+...+.++++|+||+|+|.....+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~ 81 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYAP 81 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHHH
Confidence 68999987 99999999999998875 466655444333332222 22221112334789999999998876664
Q ss_pred HHHhcCCcEEe
Q 025163 73 AITSKGGHFLE 83 (257)
Q Consensus 73 ~~~~~g~~~~~ 83 (257)
.+...|..++|
T Consensus 82 ~~~~~G~~VID 92 (334)
T PRK14874 82 KAAAAGAVVID 92 (334)
T ss_pred HHHhCCCEEEE
Confidence 44566777776
No 284
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.21 E-value=0.0026 Score=56.06 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=61.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC-------------------chhHHHHHH----C--CCcc--------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT-------------------LSKCDELVA----H--GATV--------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~-------------------~~~~~~l~~----~--g~~~--------~ 47 (257)
||.|||+|..|..++..|++.|. +++++|++ ..|++.+.+ . .+.+ .
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~ 216 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTS 216 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 79999999999999999999997 69999887 234443322 1 1211 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||.|+-+...... .....++.++.+.+.+
T Consensus 217 ~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 217 DNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1334567899999999887654322 5667788888877654
No 285
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.21 E-value=0.0043 Score=45.54 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH------------HHHHHH
Q 025163 146 MMNTFSEGLVLAEKSGLD--PRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD------------MRLALA 211 (257)
Q Consensus 146 ~~~~~~E~~~l~~~~g~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd------------~~~~~~ 211 (257)
....+.|+..++++.|++ ++.+.+.+....... +.....|+.| .+.+++
T Consensus 40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~-----------------~~~~~SM~~D~~~gr~tEid~i~G~vv~ 102 (125)
T PF08546_consen 40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRST-----------------PDNRSSMLQDIEAGRPTEIDYINGYVVR 102 (125)
T ss_dssp HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCT-----------------TTT--HHHHHHHTTB--SHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc-----------------CCccccHHHHHHHcccccHHHHHHHHHH
Confidence 356889999999999964 333333332110000 0001223333 388999
Q ss_pred HHhhcCCCchHHHHHHHHHHH
Q 025163 212 LGDENAVSMPIAAAANEAFKK 232 (257)
Q Consensus 212 ~a~~~g~~~p~~~~~~~~~~~ 232 (257)
.++++|+++|..+.++++++.
T Consensus 103 ~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 103 LAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHCCCCcHHHHHHHHHHH
Confidence 999999999999999998874
No 286
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.0019 Score=54.24 Aligned_cols=117 Identities=19% Similarity=0.295 Sum_probs=78.7
Q ss_pred eEEEEcCChh-HHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~m-G~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||.|.+ |.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+.......-..|..
T Consensus 160 ~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gav 225 (285)
T PRK14189 160 HAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTADMVKPGAT 225 (285)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence 6899999988 999999999999999998653 2367788899999999999877665555567788
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
++|..+.... .+. ..||-+ ++.+.+.-..+.+ .-|.+|.-...-+..|++.+
T Consensus 226 VIDVGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~Ll~N~~~a 277 (285)
T PRK14189 226 VIDVGMNRDD----AGK----LCGDVD-FAGVKEVAGYITP---VPGGVGPMTITMLLVNTIEA 277 (285)
T ss_pred EEEccccccC----CCC----eeCCcc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHHHH
Confidence 8887765321 122 223332 2334443332221 12346666667777776643
No 287
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.20 E-value=0.0009 Score=57.54 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCchh--H----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--C----DELVAH------GATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~~dvi 60 (257)
+||+|||+ |.+|..++..|...|. ++.++|++++. + .++... ......+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999998775 79999995432 2 222221 123334555778899999
Q ss_pred EEccC
Q 025163 61 IGMLA 65 (257)
Q Consensus 61 i~~v~ 65 (257)
|++.-
T Consensus 83 vitaG 87 (322)
T cd01338 83 LLVGA 87 (322)
T ss_pred EEeCC
Confidence 99853
No 288
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.17 E-value=0.0014 Score=56.88 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC---eEEEE--cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~---~V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
|||+|||+ |..|..+.+.|.+++| ++..+ .|+..+..........+.....+.++++|++|+|+|.....+.
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~~~ 87 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKFGP 87 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHHHH
Confidence 58999987 9999999999999887 34333 3333322212111112221122445789999999999866654
Q ss_pred HHHhcCCcEEe
Q 025163 73 AITSKGGHFLE 83 (257)
Q Consensus 73 ~~~~~g~~~~~ 83 (257)
.+...|+.++|
T Consensus 88 ~~~~~g~~VID 98 (344)
T PLN02383 88 IAVDKGAVVVD 98 (344)
T ss_pred HHHhCCCEEEE
Confidence 34456777777
No 289
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.15 E-value=0.00068 Score=53.13 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=45.6
Q ss_pred eEEEEcCChhHHHH--HHHHHHC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEEc
Q 025163 2 EVGFLGLGIMGKAI--SMNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM 63 (257)
Q Consensus 2 kI~iIG~G~mG~~l--a~~L~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~~ 63 (257)
||+|||+|+.-.+. -.-+... +.+|.++|+++++++.... .| +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 89999999887663 2223322 2389999999998875422 23 34578999999999999998
Q ss_pred cCChH
Q 025163 64 LADPA 68 (257)
Q Consensus 64 v~~~~ 68 (257)
+-...
T Consensus 81 irvGg 85 (183)
T PF02056_consen 81 IRVGG 85 (183)
T ss_dssp --TTH
T ss_pred eeecc
Confidence 87653
No 290
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.13 E-value=0.0067 Score=54.78 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=75.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc-ccCCHHHHhhcCceEEEc--cCChHHHHHHHHhc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGM--LADPAAALSAITSK 77 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~~dvii~~--v~~~~~~~~~~~~~ 77 (257)
||.|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+...++|+||.. +|.....-...+..
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~ 86 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF 86 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999994 99999999665443333221 111 111223445678988875 34332222245566
Q ss_pred CCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 78 GGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 78 g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
|+.+++-.-...... ...+..-+.| |...+...+..+|+..|.++...|++|..
T Consensus 87 gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p 142 (454)
T PRK01368 87 NIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP 142 (454)
T ss_pred CCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence 776655332211110 1112333334 33455667889999888877667767644
No 291
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.13 E-value=0.0015 Score=55.11 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=50.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----CCc--ccCCH---HHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GAT--VGGSP---AEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g~~--~~~~~---~~~~~~~dvii~~v~~~ 67 (257)
++.|+|+|..|.+++..|.+.|. +|+++||+.++.+++.+. +.. ...+. .+....+|+||=|+|-.
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 58899999999999999999986 799999999999888653 110 11122 23456789999998854
No 292
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.0051 Score=51.64 Aligned_cols=116 Identities=18% Similarity=0.289 Sum_probs=77.7
Q ss_pred eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-+. +|.+++..|.++|..|+++++. +.++.+.++++|+||.++..+..+....-..|..
T Consensus 161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gav 226 (285)
T PRK10792 161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAI 226 (285)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcE
Confidence 689999998 9999999999999999999764 2367888999999999997666655545567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
.+|..+..-. .+. ..||-+ ++.+.+.-..+.. .-|.+|.-...-+..|++.
T Consensus 227 VIDvGin~~~----~gk----~~GDvd-~~~~~~~a~~itP---vPGGVGp~T~a~L~~N~~~ 277 (285)
T PRK10792 227 VIDVGINRLE----DGK----LVGDVE-FETAAERASWITP---VPGGVGPMTVATLLENTLQ 277 (285)
T ss_pred EEEccccccc----CCC----cCCCcC-HHHHHhhccCcCC---CCCCChHHHHHHHHHHHHH
Confidence 8887754321 122 223332 2334444322221 1233566666667777653
No 293
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.11 E-value=0.003 Score=53.52 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=60.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------HH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------AI 74 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------~~ 74 (257)
.+||||+|.+|+.+|.++..-|..|+.||.- ...++....|++.. +.+|++..+|+|-+-+|-....+. ..
T Consensus 148 TLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~ 225 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAK 225 (406)
T ss_pred EEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHH
Confidence 5899999999999999999999888888752 22234555688777 799999999999999987666555 22
Q ss_pred HhcCCcEEe
Q 025163 75 TSKGGHFLE 83 (257)
Q Consensus 75 ~~~g~~~~~ 83 (257)
-.+|+..+.
T Consensus 226 mKkGVriIN 234 (406)
T KOG0068|consen 226 MKKGVRIIN 234 (406)
T ss_pred hhCCcEEEE
Confidence 245665554
No 294
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.11 E-value=0.0019 Score=50.21 Aligned_cols=64 Identities=25% Similarity=0.193 Sum_probs=48.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--------------------------CCHHHHh
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--------------------------GSPAEVI 54 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--------------------------~~~~~~~ 54 (257)
.||.|+|.|..|..-+..|...|++|+.+|.++++.+++...+.... ..+.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 37999999999999999999999999999999998888777643211 1234566
Q ss_pred hcCceEEEcc
Q 025163 55 KKCTITIGML 64 (257)
Q Consensus 55 ~~~dvii~~v 64 (257)
+.+|+||.+.
T Consensus 101 ~~~d~vI~~~ 110 (168)
T PF01262_consen 101 APADIVIGNG 110 (168)
T ss_dssp HH-SEEEEHH
T ss_pred hhCcEEeeec
Confidence 7899999754
No 295
>PRK06153 hypothetical protein; Provisional
Probab=97.11 E-value=0.0037 Score=54.51 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=59.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc----------------------hhHHHHHH----CC--Ccc-----c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL----------------------SKCDELVA----HG--ATV-----G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~----------------------~~~~~l~~----~g--~~~-----~ 47 (257)
+|+|||+|..|+.++..|++.|. +++++|-+. .|++.+++ .+ +.. .
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~I~ 257 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEYID 257 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeecCC
Confidence 79999999999999999999996 688887541 12222221 11 211 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
.+..+.+.++|+||.|+.+...... .+...++.++++.+.
T Consensus 258 ~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 258 EDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 1222456789999999998776443 566779999986654
No 296
>PRK08328 hypothetical protein; Provisional
Probab=97.10 E-value=0.0043 Score=50.78 Aligned_cols=87 Identities=17% Similarity=0.304 Sum_probs=58.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH------------------------HHHC--CCcc--------
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE------------------------LVAH--GATV-------- 46 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~------------------------l~~~--g~~~-------- 46 (257)
||.|||+|..|+.++..|++.|. +++++|.+.-.... +.+. .+.+
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~ 108 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLS 108 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 79999999999999999999996 68888755321111 1111 1111
Q ss_pred cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 47 GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 47 ~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
..++.+.++++|+||.|+-+...... .....++.++.+.+.+
T Consensus 109 ~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 109 EENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred HHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 12344567899999999987544322 4566788888776654
No 297
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.09 E-value=0.0015 Score=58.24 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=49.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC-------CC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhcCceEE
Q 025163 2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~-------g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvii 61 (257)
||+|||+ |.+|..+|..|+.. +. ++.++|++.++++- |.+. .+.+..+..+.++++|+||
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV 181 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL 181 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence 8999999 99999999999987 54 78999999887543 2221 2333345567789999999
Q ss_pred EccCC
Q 025163 62 GMLAD 66 (257)
Q Consensus 62 ~~v~~ 66 (257)
++.-.
T Consensus 182 itAG~ 186 (444)
T PLN00112 182 LIGAK 186 (444)
T ss_pred ECCCC
Confidence 98643
No 298
>PRK05442 malate dehydrogenase; Provisional
Probab=97.08 E-value=0.001 Score=57.27 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=46.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCch--hH----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KC----DELVAH------GATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~--~~----~~l~~~------g~~~~~~~~~~~~~~dvi 60 (257)
+||+|||+ |.+|..+|..|...+. ++.++|++++ ++ .++... ......+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987653 7999999543 22 222221 233444555778899999
Q ss_pred EEccC
Q 025163 61 IGMLA 65 (257)
Q Consensus 61 i~~v~ 65 (257)
|++--
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99753
No 299
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.07 E-value=0.00092 Score=58.95 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=52.1
Q ss_pred CeEEEEcCChhHH-HHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc---c---------------c--CCHHH---Hhhc
Q 025163 1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLSKCDELVAHGAT---V---------------G--GSPAE---VIKK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~-~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~---~---------------~--~~~~~---~~~~ 56 (257)
|||.++|+|+||. .++..|.+.|++|+++|++++.++.++++|.. . . .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 8999999999998 55888888999999999999999999887631 0 0 02122 2347
Q ss_pred CceEEEccCChH
Q 025163 57 CTITIGMLADPA 68 (257)
Q Consensus 57 ~dvii~~v~~~~ 68 (257)
+|+|.++|+...
T Consensus 81 ~dlvt~~v~~~~ 92 (381)
T PRK02318 81 ADLVTTAVGPNI 92 (381)
T ss_pred CCEEEeCCCccc
Confidence 799999887543
No 300
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.07 E-value=0.0013 Score=56.61 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=46.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-------CeEEEEcCCch--hHHH----HHH------CCCcccCCHHHHhhcCceE
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g-------~~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvi 60 (257)
+||+|+|+ |.+|..++..|...+ .+|.++|+++. +++. +.+ ..+....+..+.++++|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 999999999999754 48999999653 1221 111 0122345666788999999
Q ss_pred EEccC
Q 025163 61 IGMLA 65 (257)
Q Consensus 61 i~~v~ 65 (257)
|.+.-
T Consensus 83 I~tAG 87 (325)
T cd01336 83 ILVGA 87 (325)
T ss_pred EEeCC
Confidence 99753
No 301
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.07 E-value=0.0021 Score=56.52 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=54.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCC-------CcccCCHH-HHhhcCceEEEccCChHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~~dvii~~v~~~~~~ 70 (257)
|||+|+|+ |..|..+.+.|.++ .++|+.+.++.++-+.+.... .....+.+ +.++++|++|+|+|.....
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~s~ 118 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQ 118 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHHHH
Confidence 58999998 99999999999998 678998877654433332211 11111222 2247899999999987555
Q ss_pred HH--HHHhcCCcEEe
Q 025163 71 LS--AITSKGGHFLE 83 (257)
Q Consensus 71 ~~--~~~~~g~~~~~ 83 (257)
+. .+ ..|..++|
T Consensus 119 ~i~~~~-~~g~~VID 132 (381)
T PLN02968 119 EIIKAL-PKDLKIVD 132 (381)
T ss_pred HHHHHH-hCCCEEEE
Confidence 54 33 35666666
No 302
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.04 E-value=0.0019 Score=54.19 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=49.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~ 67 (257)
++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+.+. +.....++ ....+|+||=|+|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 58899999999999999999996 599999999999988763 22111111 124589999999865
No 303
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.04 E-value=0.0023 Score=45.41 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=48.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++.|||.|.+|..=++.|.+.|.+|++++.+.+..+ ..++. .....+.++++++||.|+.+....+.
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~ 76 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEA 76 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHH
Confidence 689999999999999999999999999998761112 22222 12334557789999999988766554
No 304
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.021 Score=47.09 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=76.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-Ce-EEEEcCCchhH-----HHHH---HCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNG-FK-VTVWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g-~~-V~~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 69 (257)
|||+|.|+ |.||..+.+.+.+.. ++ +-.++|.++.. ..+. ..|+.+.+++.....++|++|=.+.+...
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~~ 82 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEAT 82 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchhh
Confidence 79999999 999999999999876 45 45568865422 1222 23566677777777899999976655444
Q ss_pred HHH--HHHhcCCcEEeccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHHHH
Q 025163 70 ALS--AITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLVVN 140 (257)
Q Consensus 70 ~~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~~n 140 (257)
.+. .....+... ++-. |-+++..++++++-+.++ +++.++ +|...+.|++..
T Consensus 83 ~~~l~~~~~~~~~l-----------------VIGTTGf~~e~~~~l~~~a~~v~--vv~a~NfSiGvnll~~l~~~ 139 (266)
T COG0289 83 LENLEFALEHGKPL-----------------VIGTTGFTEEQLEKLREAAEKVP--VVIAPNFSLGVNLLFKLAEQ 139 (266)
T ss_pred HHHHHHHHHcCCCe-----------------EEECCCCCHHHHHHHHHHHhhCC--EEEeccchHHHHHHHHHHHH
Confidence 443 333444322 1111 226677777888777743 566666 555555554433
No 305
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.011 Score=53.09 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=77.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh--HHHHHHCCCcccC--CHHHHhhcCceEEEcc--CChHHHHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML--ADPAAALSAIT 75 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~~~~ 75 (257)
+|.|||.|..|.+.++.|.+.|++|+++|.++.. .+.+. .|+.... ...+.+++.|++|..- |.....-....
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 86 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA 86 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 6999999999999999999999999999975442 23443 3665432 2334456788766543 22222222455
Q ss_pred hcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163 76 SKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG 132 (257)
Q Consensus 76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a 132 (257)
..|+.++.-+-.-... ......-+.| |...+...+..+|+..+.++...|.+|..
T Consensus 87 ~~g~~v~~~~el~~~~--~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p 143 (438)
T PRK03806 87 DAGIEIVGDIELFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP 143 (438)
T ss_pred HCCCeEEEHHHHHhhh--cCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchh
Confidence 6787766543211111 1112223333 34566677888998888776656655543
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.03 E-value=0.0023 Score=58.12 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=41.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~ 45 (257)
|+.|||+|.+|...+..+...|.+|+++|+++++++...+.|++
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 78999999999999999999999999999999999999888876
No 307
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.02 E-value=0.0017 Score=55.75 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=41.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~ 63 (257)
||.|||+|.||...+++|.++|. +|++.+|+.+. ..+.+.. . ...+....+|+||.|
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~---~-~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVV---R-EELSFQDPYDVIFFG 233 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhh---h-hhhhcccCCCEEEEc
Confidence 78999999999999999999995 69999999753 1111100 0 111334688999987
No 308
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.02 E-value=0.002 Score=54.87 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=48.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH---HHHHHC-C-----------CcccCCHHHHhhcCceEEEc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC---DELVAH-G-----------ATVGGSPAEVIKKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~---~~l~~~-g-----------~~~~~~~~~~~~~~dvii~~ 63 (257)
|+|+|-|+ |.+|+.+.+.|+++||.|...-|+++.- +.|.+. | +.-..+..+++++||.||=+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence 57889977 9999999999999999999999998862 223332 1 12234778899999999854
No 309
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.01 E-value=0.0026 Score=54.66 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred EEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHH-C------------------CCcccCCHHHHhhcCceEE
Q 025163 3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H------------------GATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~~dvii 61 (257)
|+|+|+|.+|...++.+.+. +.+|+ +.|.+++....+.. . |+.+..+++++..++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998764 45654 45777775444443 1 2334557889989999999
Q ss_pred EccCChHHHHH--HHHh--cCCcEEecc
Q 025163 62 GMLADPAAALS--AITS--KGGHFLEAP 85 (257)
Q Consensus 62 ~~v~~~~~~~~--~~~~--~g~~~~~~p 85 (257)
.|+|....... .+.. .+..++++|
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 99998766544 3333 344566666
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.00 E-value=0.0035 Score=56.89 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCC--------------------------HHHHh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGS--------------------------PAEVI 54 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~--------------------------~~~~~ 54 (257)
|+.|+|+|.+|...+..+...|..|+++|+++++.+.....|... ..+ ..+.+
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999988888776543 111 23445
Q ss_pred hcCceEEEcc-----CChHHHHH---HHHhcCCcEEeccc
Q 025163 55 KKCTITIGML-----ADPAAALS---AITSKGGHFLEAPV 86 (257)
Q Consensus 55 ~~~dvii~~v-----~~~~~~~~---~~~~~g~~~~~~pv 86 (257)
+++|+||.|+ |.+..... ..-..|..++|-..
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 7899999998 55422222 22234556666443
No 311
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=97.00 E-value=0.0035 Score=51.60 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=59.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Cc-------cc-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--AT-------VG- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~-------~~- 47 (257)
||.|+|+|.+|+.++..|++.|. +++++|.+.= |++. +.+.+ +. ..
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~ 105 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDD 105 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCH
Confidence 79999999999999999999995 6888876532 1221 22111 11 11
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||.|+-+...... .....++.++.+.+.+
T Consensus 106 ~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 106 AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1344567899999999987765333 5556788888766544
No 312
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.00 E-value=0.0011 Score=57.03 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=46.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCc--hhHHH----HHHC------CCcccCCHHHHhhcCceEE
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDE----LVAH------GATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~--~~~~~----l~~~------g~~~~~~~~~~~~~~dvii 61 (257)
||+|||+ |.+|..++..|...|. ++.++|+++ ++++- +.+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999997652 599999987 53221 1111 1233346668889999999
Q ss_pred EccC
Q 025163 62 GMLA 65 (257)
Q Consensus 62 ~~v~ 65 (257)
++--
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 9753
No 313
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.99 E-value=0.036 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=67.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCch-------------------hHHHHHH----CC--Ccc--------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLS-------------------KCDELVA----HG--ATV--------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~-------------------~~~~l~~----~g--~~~--------~ 47 (257)
+|.|+|+|.+|+.++..|++.| .+++++|.+.- |++.+++ .+ +++ .
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~ 111 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP 111 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence 6999999999999999999999 57888876521 1222222 11 111 1
Q ss_pred CCHHHHh-hcCceEEEccCChHHHHH---HHHhcCCcEEeccccCCccccccCcEE-EEecCChhhHHHHHHHHHH
Q 025163 48 GSPAEVI-KKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKALYDEAISALNV 118 (257)
Q Consensus 48 ~~~~~~~-~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~l~~ 118 (257)
.+..+.+ .+.|+||.|+-+...... .....++.++...-.++......-+.. +.-.-.......++..|+.
T Consensus 112 e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t~~~pla~~~R~~lr~ 187 (268)
T PRK15116 112 DNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLKS 187 (268)
T ss_pred hhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeecccCChHHHHHHHHHHH
Confidence 2333444 368999999876544332 556678888875433332221111111 1111223445678888887
No 314
>PLN00106 malate dehydrogenase
Probab=96.99 E-value=0.0026 Score=54.65 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=47.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchh--HHHHHHC----CCc---ccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH----GAT---VGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~--~~~l~~~----g~~---~~~~~~~~~~~~dvii~~v~ 65 (257)
.||+|||+ |.+|..++..|...+. ++.++|+++.. ..+|... .+. -.+++.++++++|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 38999999 9999999999997664 89999997621 1233321 111 13345788899999999864
No 315
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.99 E-value=0.002 Score=57.52 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=50.6
Q ss_pred CeEEEEcCChh-HHHHHHHHHHC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~m-G~~la~~L~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~ 62 (257)
|||+|||+|+. ...+...|+.. +-+|.++|+++++++.... .| +..++|.+++++++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 89999999984 33455666644 3589999999988765322 23 3567899999999999999
Q ss_pred ccCChH
Q 025163 63 MLADPA 68 (257)
Q Consensus 63 ~v~~~~ 68 (257)
..-...
T Consensus 81 ~irvGg 86 (425)
T cd05197 81 QFRVGG 86 (425)
T ss_pred eeecCC
Confidence 875443
No 316
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.97 E-value=0.0027 Score=52.45 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=35.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
|+|.|+|+ |.+|..++..|+++||+|++..|++++.+.+.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 57999995 99999999999999999999999988765543
No 317
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.0016 Score=50.59 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=53.9
Q ss_pred eEEEEcCChhHHHHHHHHH--HCCCe-EEEEcCCchhHHHHHHCCCcc--cCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163 2 EVGFLGLGIMGKAISMNLL--RNGFK-VTVWNRTLSKCDELVAHGATV--GGSPAEVIK--KCTITIGMLADPAAALS-- 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~--~~g~~-V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~~dvii~~v~~~~~~~~-- 72 (257)
++.+||+|++|.+++..=. ++|++ +.++|.+++++-.-.. ++.+ .+++++.++ +.|+.++|||...+.+.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad 164 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVAD 164 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHH
Confidence 6889999999999987643 45666 6668999886543222 2222 234555555 78999999998776665
Q ss_pred HHHhcCCc
Q 025163 73 AITSKGGH 80 (257)
Q Consensus 73 ~~~~~g~~ 80 (257)
.+...|+.
T Consensus 165 ~Lv~aGVk 172 (211)
T COG2344 165 RLVKAGVK 172 (211)
T ss_pred HHHHcCCc
Confidence 66666654
No 318
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.97 E-value=0.0063 Score=53.14 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=59.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHH----HHHC--CCcc--------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDE----LVAH--GATV--------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~----l~~~--g~~~--------~ 47 (257)
||.|||+|.+|+.++.+|+..|. +++++|.+. .|++. +++. .+.+ .
T Consensus 30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~ 109 (355)
T PRK05597 30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW 109 (355)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence 79999999999999999999996 688888764 12222 2221 1111 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS 89 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~ 89 (257)
.+..+.++++|+||.|+-+...... .....++.++.+.+.+-
T Consensus 110 ~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 110 SNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1234677899999999876544332 55567888888766544
No 319
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.2 Score=42.67 Aligned_cols=232 Identities=18% Similarity=0.181 Sum_probs=134.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHH---CC-----------------C----cccCCHHHHhhc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA---HG-----------------A----TVGGSPAEVIKK 56 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~---~g-----------------~----~~~~~~~~~~~~ 56 (257)
++-++|+|...--+|.-|..+| ..+-+++|-..+-+++.+ .+ - ....+++++..+
T Consensus 6 ~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~d 85 (431)
T COG4408 6 PVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVGD 85 (431)
T ss_pred ceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhch
Confidence 5789999999999999999987 478889885555555543 11 0 123467788888
Q ss_pred CceEEEccCChHHHHH-------HHHhcCCcEEeccccCCcc--------------------------------------
Q 025163 57 CTITIGMLADPAAALS-------AITSKGGHFLEAPVSGSKQ-------------------------------------- 91 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~-------~~~~~g~~~~~~pv~~~~~-------------------------------------- 91 (257)
-+.+|+|||.+.-.+. .+...-...+-.|.+|...
T Consensus 86 wqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p~~alT 165 (431)
T COG4408 86 WQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQPNRALT 165 (431)
T ss_pred hheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccCcchHHH
Confidence 8999999998877665 1111111111122222110
Q ss_pred ccccCcEEEEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHH-----------------HH-------------
Q 025163 92 PAETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMK-----------------LV------------- 138 (257)
Q Consensus 92 ~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~k-----------------l~------------- 138 (257)
.+.+. .+..| ++....+.+..++...+..+..+.++-.++... .+
T Consensus 166 kavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKl 243 (431)
T COG4408 166 KAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKL 243 (431)
T ss_pred HHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEec
Confidence 00001 13333 355667788899988887765555433332211 11
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--Cchhhh-----cc--CC-------------cccC
Q 025163 139 ------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI--ANPMFK-----GK--GP-------------TMLQ 190 (257)
Q Consensus 139 ------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~--~s~~~~-----~~--~~-------------~~~~ 190 (257)
...++.-+.....|.+.+..+.|+.+=.+..+++...- ...++. .+ .+ .++-
T Consensus 244 yPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRYtalLv 323 (431)
T COG4408 244 YPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRYTALLV 323 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHHHHHhc
Confidence 12333445678889999999999988777777764310 000000 00 00 0111
Q ss_pred CCCCC-------------Cc-----------ccchH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163 191 SNYAP-------------AF-----------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS 235 (257)
Q Consensus 191 ~~~~~-------------~~-----------~~~~~-~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 235 (257)
.-|++ .| .+.-+ ..| +..+.-++...+++||..+....-++.+.+
T Consensus 324 DPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k 396 (431)
T COG4408 324 DPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALK 396 (431)
T ss_pred CCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 11110 00 01111 222 477889999999999999999999998876
No 320
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.96 E-value=0.0031 Score=54.81 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=53.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-CeEEEE-cCCchhHHHHHHC-------CC-------cccCCHHHHhhcCceEEEc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g-~~V~~~-~r~~~~~~~l~~~-------g~-------~~~~~~~~~~~~~dvii~~ 63 (257)
|||+|+|+ |.||..+++.|.++. ++|... +++++.-+.+.+. +. .+.....+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 79999996 999999999999876 576665 5443322222110 00 1111112344789999999
Q ss_pred cCChHHHHH--HHHhcCCcEEe
Q 025163 64 LADPAAALS--AITSKGGHFLE 83 (257)
Q Consensus 64 v~~~~~~~~--~~~~~g~~~~~ 83 (257)
+|.....+. .+...|...++
T Consensus 81 ~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 81 LPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 998876655 44556777776
No 321
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0038 Score=53.30 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=53.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----CC---cc-cCCHHHH-hhcCceEEEccCChH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA---TV-GGSPAEV-IKKCTITIGMLADPA 68 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g~---~~-~~~~~~~-~~~~dvii~~v~~~~ 68 (257)
|||+|||+ |+.|..|.+.|..+.+ ++..+..+..+=+.+.+. |. .. ..++++. .+++|+||+|+|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 58999987 9999999999998764 666665433222233221 21 11 1233443 345899999999998
Q ss_pred HHHH--HHHhcCCcEEe
Q 025163 69 AALS--AITSKGGHFLE 83 (257)
Q Consensus 69 ~~~~--~~~~~g~~~~~ 83 (257)
..+. .+.+.|...+|
T Consensus 83 s~~~v~~l~~~g~~VID 99 (349)
T COG0002 83 SAELVPELLEAGCKVID 99 (349)
T ss_pred HHHHHHHHHhCCCeEEE
Confidence 8776 44445655555
No 322
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.92 E-value=0.0027 Score=56.83 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=49.5
Q ss_pred CeEEEEcCChhHH-HHHHHHHHC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~-~la~~L~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~ 62 (257)
|||+|||+|+.=+ .+...|+.. +-+|+++|+++++++.... .| +..++|..++++++|+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 8999999998622 345555543 3589999999988765422 23 4567899999999999999
Q ss_pred ccCCh
Q 025163 63 MLADP 67 (257)
Q Consensus 63 ~v~~~ 67 (257)
..-..
T Consensus 81 ~irvG 85 (437)
T cd05298 81 QIRVG 85 (437)
T ss_pred EeeeC
Confidence 87544
No 323
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.92 E-value=0.0066 Score=48.49 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=57.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch---------------------hH----HHHHHCC--Cc-------
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS---------------------KC----DELVAHG--AT------- 45 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~---------------------~~----~~l~~~g--~~------- 45 (257)
.||.|||+|.+|..++++|+..|. +++++|.+.= |+ +.+++.+ ++
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 379999999999999999999996 5888875421 11 1122211 11
Q ss_pred c---cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 46 V---GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 46 ~---~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
. ..+..+..+++|+||.|..+...... .....++.++.+...|
T Consensus 100 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 100 SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 1 12345567899999998766443222 5566788877765443
No 324
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.92 E-value=0.006 Score=50.42 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=57.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCcc-------c-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GATV-------G- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~~-------~- 47 (257)
||.|||+|.+|+.++.+|+..|. +++++|.+.= |++. +.+. .+.+ .
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~ 113 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDD 113 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence 79999999999999999999995 6888875421 2221 1211 1111 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
.+..+.++++|+||.|+-+...... .....++.++.+.+.
T Consensus 114 ~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 114 DELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred HHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeec
Confidence 1234567899999999977655332 455678888876543
No 325
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=96.91 E-value=0.012 Score=53.02 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=73.3
Q ss_pred eEEEEcCChhHH-HHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCccc--CCHHHHhhcCceEEEc--cCChHHHHHHH
Q 025163 2 EVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG--GSPAEVIKKCTITIGM--LADPAAALSAI 74 (257)
Q Consensus 2 kI~iIG~G~mG~-~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~~dvii~~--v~~~~~~~~~~ 74 (257)
+|-|||.|.+|. ++|..|.+.|++|+++|.++. ..+.+.+.|++.. .+......++|+||.. +|.....-...
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a 80 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV 80 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence 478999999995 688999999999999998653 2335666687654 3444444568988875 34332222245
Q ss_pred HhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCC
Q 025163 75 TSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKK 122 (257)
Q Consensus 75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~ 122 (257)
...|+.++.-.-..........+..-+.| |...+.+.+..+|+..+.+
T Consensus 81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 130 (448)
T TIGR01081 81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLK 130 (448)
T ss_pred HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence 66777776643321110001122223333 3455666788888876644
No 326
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.91 E-value=0.0016 Score=55.73 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=49.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~ 65 (257)
|+|.|.|. |.+|..++..|++.|++|++++|+++....+...++.. ..++.++++++|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 78999985 99999999999999999999999877655444333321 1234556678899988763
No 327
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.90 E-value=0.0034 Score=53.13 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=48.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---hhHHHHHHC-C----Cc-ccCCH------HHHhhcCceEEEccC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAH-G----AT-VGGSP------AEVIKKCTITIGMLA 65 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---~~~~~l~~~-g----~~-~~~~~------~~~~~~~dvii~~v~ 65 (257)
++.|||+|..+.+++..|...|. +|++++|++ ++.+++.+. + .. ...++ .+...++|+||-|+|
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence 58899999999999999999885 799999995 477777652 1 11 11222 234567899999998
Q ss_pred Ch
Q 025163 66 DP 67 (257)
Q Consensus 66 ~~ 67 (257)
-.
T Consensus 206 ~G 207 (288)
T PRK12749 206 VG 207 (288)
T ss_pred CC
Confidence 65
No 328
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.89 E-value=0.0076 Score=52.86 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=59.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCc--c------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GAT--V------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~--~------~ 47 (257)
+|.|||+|.+|..++.+|+..|. +++++|.+.= |++. +.+. .++ . .
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~ 122 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTA 122 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCH
Confidence 69999999999999999999995 7999987621 2222 2211 111 1 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
.+..+.++++|+||-|+-+...... .....++.++.+.+.
T Consensus 123 ~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~ 165 (370)
T PRK05600 123 ENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVL 165 (370)
T ss_pred HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 2445678899999999988665433 455668877776654
No 329
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.87 E-value=0.0042 Score=58.74 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=50.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~ 51 (257)
+||.|||.|..|...|..|.+.|++|+++++++. ..+.+.+.|+.... +..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~ 407 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE 407 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence 3799999999999999999999999999998643 23344555654321 344
Q ss_pred HHhhcCceEEEccCCh
Q 025163 52 EVIKKCTITIGMLADP 67 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~ 67 (257)
+.....|.||+++-..
T Consensus 408 ~~~~~~DavilAtGa~ 423 (654)
T PRK12769 408 SLLEDYDAVFVGVGTY 423 (654)
T ss_pred HHHhcCCEEEEeCCCC
Confidence 5556799999988653
No 330
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.87 E-value=0.0036 Score=52.77 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=71.8
Q ss_pred eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||.|. .|.+++..|.+.|.+|++++|.. .++.+.++++|+||.|++.+.......-..|..
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gav 226 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPELIKKDWIKQGAV 226 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCcCCHHHcCCCCE
Confidence 689999998 99999999999999999998832 245566689999999996554333333345666
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
.+|..+... .+. ..||-+ ++.+++.-..+.. .-|.+|.-...-+..|++.+
T Consensus 227 ViDvg~n~~-----~~~----~~GDvd-~~~~~~~a~~itP---vPGGVGp~T~a~L~~n~~~~ 277 (283)
T PRK14192 227 VVDAGFHPR-----DGG----GVGDIE-LQGIEEIASAYTP---VPGGVGPMTINTLIRQTVEA 277 (283)
T ss_pred EEEEEEeec-----CCC----Cccccc-HHHhhccceEeCC---CCCcChHHHHHHHHHHHHHH
Confidence 666544311 011 124432 2333333222211 12336666677777776643
No 331
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.86 E-value=0.0032 Score=56.12 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.1
Q ss_pred CeEEEEcCChhHH-HHHHHHHHC-----CCeEEEEcCC-chhHHHHHH--------CC----CcccCCHHHHhhcCceEE
Q 025163 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELVA--------HG----ATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 1 mkI~iIG~G~mG~-~la~~L~~~-----g~~V~~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii 61 (257)
|||+|||+|+.-+ .+...|+.. +-+|+++|++ +++++.... .| +..+++.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 8999999999744 455555543 2579999999 787654322 23 345779999999999999
Q ss_pred EccCCh
Q 025163 62 GMLADP 67 (257)
Q Consensus 62 ~~v~~~ 67 (257)
.+.-.+
T Consensus 81 ~~~~vg 86 (419)
T cd05296 81 TQIRVG 86 (419)
T ss_pred EEEeeC
Confidence 987443
No 332
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.86 E-value=0.0073 Score=51.32 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=50.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGF-KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS 76 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~-~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~ 76 (257)
||+|+|+ |..|..+.+.|..+.+ ++... .+. . ....+.+++.+++|++|+|+|.....+. .+..
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-~----------~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-R----------KDAAERAKLLNAADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-c----------cCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 8999987 9999999999998754 43333 221 1 1122455666889999999999866664 4445
Q ss_pred cCCcEEe
Q 025163 77 KGGHFLE 83 (257)
Q Consensus 77 ~g~~~~~ 83 (257)
.|..++|
T Consensus 72 ~g~~VID 78 (310)
T TIGR01851 72 PNTCIID 78 (310)
T ss_pred CCCEEEE
Confidence 6777777
No 333
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.86 E-value=0.0032 Score=53.71 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=50.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS 76 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~ 76 (257)
+||+|||+ |..|..+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|.....+. .+..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~ 72 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAREAVALIDN 72 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 47999995 9999999999998864 44433322221 11 2334555789999999998877665 4445
Q ss_pred cCCcEEe
Q 025163 77 KGGHFLE 83 (257)
Q Consensus 77 ~g~~~~~ 83 (257)
.|..++|
T Consensus 73 ~g~~VID 79 (313)
T PRK11863 73 PATRVID 79 (313)
T ss_pred CCCEEEE
Confidence 6777777
No 334
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.86 E-value=0.0042 Score=58.54 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=51.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (257)
.||.|||.|..|...|..|.+.|++|++|++.+. ..+.+.+.|+... .+..
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence 3799999999999999999999999999998763 3444555665321 1345
Q ss_pred HHhhcCceEEEccCCh
Q 025163 52 EVIKKCTITIGMLADP 67 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~ 67 (257)
+.....|.||+++-..
T Consensus 391 ~l~~~~DaV~latGa~ 406 (639)
T PRK12809 391 DLTSEYDAVFIGVGTY 406 (639)
T ss_pred HHHhcCCEEEEeCCCC
Confidence 5667899999998654
No 335
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.84 E-value=0.0028 Score=42.66 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
||.|||.|..|..+|..|.+.|.+|+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998765
No 336
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.83 E-value=0.0025 Score=54.67 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=45.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCC--CeEEEEcCCchhH--HHHHHCC----CcccCC---HHHHhhcCceEEEccCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKC--DELVAHG----ATVGGS---PAEVIKKCTITIGMLAD 66 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g--~~V~~~~r~~~~~--~~l~~~g----~~~~~~---~~~~~~~~dvii~~v~~ 66 (257)
||+|||+ |.+|..++..|+..+ .++.++|++.... .++.... +...++ ..++++++|+||++.-.
T Consensus 10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 7999999 999999999999655 5899999943222 2333221 121222 25788999999998643
No 337
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.82 E-value=0.01 Score=50.75 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=59.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchh-------------------H----HHHHHC--CCc-------ccC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK-------------------C----DELVAH--GAT-------VGG 48 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~-------------------~----~~l~~~--g~~-------~~~ 48 (257)
||.|||+|.+|..++++|+..|. +++++|.+.=. . +.+++. .+. +..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 68999999999999999999996 68888765321 1 112221 111 111
Q ss_pred --CHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 49 --SPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 49 --~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
...+..++.|+|+.|+-+...... .....++.++++...|
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCc
Confidence 134667899999999877655332 5566788888876544
No 338
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0078 Score=50.53 Aligned_cols=116 Identities=19% Similarity=0.311 Sum_probs=77.8
Q ss_pred eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-| .+|.+++..|.++|..|++++... .++.+.++++|+||.++..+.......-..|..
T Consensus 159 ~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~Gav 224 (285)
T PRK14191 159 DVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAV 224 (285)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcE
Confidence 68999999 999999999999999999985432 235678899999999998887766555577888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. ..||-+ ++.+.+....+.+ .-|.+|.-...-+..|++.
T Consensus 225 VIDvGi~~~~----~gk----lvGDvd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~~ 275 (285)
T PRK14191 225 VVDIGINRLN----DGR----LVGDVD-FENVAPKASFITP---VPGGVGPMTIVSLLENTLI 275 (285)
T ss_pred EEEeeccccc----CCc----eecccc-HHHHhhhccEEec---CCCCChHHHHHHHHHHHHH
Confidence 8887764321 122 234332 2334443332221 1244666666777777663
No 339
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.82 E-value=0.0052 Score=53.37 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=53.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHC----------CCe-EEEEcCC----------chhHHHHHHC-CCc-------ccCCHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN----------GFK-VTVWNRT----------LSKCDELVAH-GAT-------VGGSPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~----------g~~-V~~~~r~----------~~~~~~l~~~-g~~-------~~~~~~ 51 (257)
+||+|+|+|.||..+++.|.+. +.+ |.++|++ .+++..+.+. +.. ...++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999999865 345 4445753 3344444332 211 124778
Q ss_pred HHhh--cCceEEEccCChHH-----HHH--HHHhcCCcEEe
Q 025163 52 EVIK--KCTITIGMLADPAA-----ALS--AITSKGGHFLE 83 (257)
Q Consensus 52 ~~~~--~~dvii~~v~~~~~-----~~~--~~~~~g~~~~~ 83 (257)
++++ +.|+|+.|+|+... .+. ..-.+|.+++.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 8773 68999999997432 111 44467888766
No 340
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.82 E-value=0.0035 Score=54.17 Aligned_cols=81 Identities=11% Similarity=0.212 Sum_probs=50.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEcCCchhHH-HHHHCC--Cccc-CCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCD-ELVAHG--ATVG-GSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~r~~~~~~-~l~~~g--~~~~-~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|||+|+|+ |.+|..+.+.|.+++|. +... ++.++.. .+.-.| .... .+..+ ++++|++|+|+|.....+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s~~~ 82 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVSRSF 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHHHHH
Confidence 57999997 99999999999988774 3333 2222211 111112 1121 12333 4789999999997644443
Q ss_pred --HHHhcCCcEEe
Q 025163 73 --AITSKGGHFLE 83 (257)
Q Consensus 73 --~~~~~g~~~~~ 83 (257)
.+...|+.++|
T Consensus 83 v~~~~~~G~~VID 95 (336)
T PRK05671 83 AEKARAAGCSVID 95 (336)
T ss_pred HHHHHHCCCeEEE
Confidence 44556777777
No 341
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.81 E-value=0.0041 Score=55.93 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=53.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcc--------cCCHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATV--------GGSPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~--------~~~~~ 51 (257)
.+|+|||+|.-|.+.|..|.+.||+|++|++.+. .++.|.+.|+++ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 4799999999999999999999999999988654 244555556432 34778
Q ss_pred HHhhcCceEEEccCCh
Q 025163 52 EVIKKCTITIGMLADP 67 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~ 67 (257)
++.+..|.|++|+.+.
T Consensus 204 ~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 204 ELLKEYDAVFLATGAG 219 (457)
T ss_pred HHHHhhCEEEEecccc
Confidence 8888889999998644
No 342
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.81 E-value=0.0039 Score=54.74 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=45.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEE--cCCchhHHHH----HH------CCCcccCCHHHHhhcCceEE
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDEL----VA------HGATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~--~r~~~~~~~l----~~------~g~~~~~~~~~~~~~~dvii 61 (257)
||+|||+ |.+|..+|..|...+. .+.++ |++.++++-. .+ ..+.+..+..+.++++|+||
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV 125 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL 125 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence 8999999 9999999999998763 24444 8887765432 21 12333445567789999999
Q ss_pred EccC
Q 025163 62 GMLA 65 (257)
Q Consensus 62 ~~v~ 65 (257)
++.-
T Consensus 126 itAG 129 (387)
T TIGR01757 126 LIGA 129 (387)
T ss_pred ECCC
Confidence 9754
No 343
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.80 E-value=0.0031 Score=53.90 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=46.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchh--HHHHHHC--CCccc----C-CHHHHhhcCceEEEccCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH--GATVG----G-SPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~--~~~l~~~--g~~~~----~-~~~~~~~~~dvii~~v~~ 66 (257)
||+|||+ |.+|..+|..|...++ ++.++|+++.. ..+|... ...+. . ++.+.++++|+||++...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 7999999 9999999999998875 79999997622 1223321 11121 1 346788999999998643
No 344
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.78 E-value=0.0025 Score=54.24 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=45.6
Q ss_pred EEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhcCceEEEccCC
Q 025163 5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 5 iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
|||+|.+|..+|..|+..+. ++.++|++.++++- +... ..++..+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 69999999999999998875 79999998775432 3221 223344445678899999998643
No 345
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.76 E-value=0.0058 Score=53.24 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=54.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH---------------CCCcc-cCCHHHHhhcCceEEE
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---------------HGATV-GGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~---------------~g~~~-~~~~~~~~~~~dvii~ 62 (257)
+||+|+| .|.+|..+.+.|.++.+ +++.+.++++...+... ....+ ..++++ +.++|+||.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 4899998 79999999999998754 78877555433221111 01111 124444 478999999
Q ss_pred ccCChHHHHH--HHHhcCCcEEec
Q 025163 63 MLADPAAALS--AITSKGGHFLEA 84 (257)
Q Consensus 63 ~v~~~~~~~~--~~~~~g~~~~~~ 84 (257)
|+|.....+. .+...|+..++.
T Consensus 83 a~p~~~s~~~~~~~~~~G~~vIDl 106 (349)
T PRK08664 83 ALPSDVAGEVEEEFAKAGKPVFSN 106 (349)
T ss_pred eCChhHHHHHHHHHHHCCCEEEEC
Confidence 9998866554 444567777763
No 346
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.74 E-value=0.014 Score=47.77 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=58.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchh-------------------HHH----HHHCC--Cc-------cc-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK-------------------CDE----LVAHG--AT-------VG- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~-------------------~~~----l~~~g--~~-------~~- 47 (257)
||.|||+|.+|..++++|+..|. +++++|.+.=. .+. +.+.+ ++ +.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 68999999999999999999996 58888765321 111 11111 11 10
Q ss_pred -CC-HHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 -GS-PAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 -~~-~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+ ..+..++.|+||.|+-+...... .....++.++++...|
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccC
Confidence 11 23567899999999887765433 5556788888866543
No 347
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.72 E-value=0.021 Score=55.45 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=73.0
Q ss_pred eEEEEcCChhHHHH-HHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEc--cCChHHHHHHHHh
Q 025163 2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGM--LADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~G~mG~~l-a~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~--v~~~~~~~~~~~~ 76 (257)
+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.|.+.|+.... ...+.+.++|+||.. +|.....-.....
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 49999999999997 9999999999999997543 34567777876532 233556678988875 3333222224556
Q ss_pred cCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK 121 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~ 121 (257)
.|+.+++-+-...... ...+...+.| |...+.+.+..+|+..+.
T Consensus 86 ~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 86 RGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 7777665332211110 1112223333 234555667778877664
No 348
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.71 E-value=0.054 Score=43.59 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=53.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHHHCCC-cc---cCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGA-TV---GGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~~~g~-~~---~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++.|||.|..|..=++.|++.|.+|+++.... +.+..+.+.+- .. ..++.+. .++++||.|+++...-+.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~ln~~ 88 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEELNER 88 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHHHHHH
Confidence 368999999999999999999999999997765 55666665532 22 2234444 359999999998766655
No 349
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.71 E-value=0.01 Score=44.56 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCcE
Q 025163 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHF 81 (257)
Q Consensus 3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~~ 81 (257)
|.|+|- ...|..++..|.+.|..|+.++++. .++.+.++++|+|+.++..........-..|...
T Consensus 31 v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~V 96 (140)
T cd05212 31 VLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATV 96 (140)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEE
Confidence 444443 3445555555554455555444321 2678889999999999988755554455566666
Q ss_pred Eecc
Q 025163 82 LEAP 85 (257)
Q Consensus 82 ~~~p 85 (257)
+|..
T Consensus 97 idvg 100 (140)
T cd05212 97 INCS 100 (140)
T ss_pred EEcC
Confidence 6544
No 350
>PRK08223 hypothetical protein; Validated
Probab=96.70 E-value=0.016 Score=48.75 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=57.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--C-------cc-c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--A-------TV-G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~-------~~-~ 47 (257)
+|.|||+|.+|+.++.+|+..|. +++++|.+.= |++. +++.+ + .+ .
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~ 108 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGK 108 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999995 6888876521 1111 11111 1 11 2
Q ss_pred CCHHHHhhcCceEEEccCCh--HHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADP--AAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~--~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+|+-|+... ..... .....++.++.+.+.+
T Consensus 109 ~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 109 ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 35567788999999888653 22111 5566788888866544
No 351
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0051 Score=51.14 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=54.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~ 66 (257)
|+|.|.|+ |.+|..+...|.++|++|.+..|++++...+. .++.+ ..++..++++.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 78999965 99999999999999999999999999998888 55433 33566677899999998883
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.66 E-value=0.0087 Score=54.30 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=50.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPAE 52 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~~ 52 (257)
||.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.... ...+
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~ 222 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDD 222 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHH
Confidence 699999999999999999999999999988642 23455666754321 2344
Q ss_pred HhhcCceEEEccCChH
Q 025163 53 VIKKCTITIGMLADPA 68 (257)
Q Consensus 53 ~~~~~dvii~~v~~~~ 68 (257)
.....|.||+++-...
T Consensus 223 ~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 223 LLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHhcCCEEEEEeCCCC
Confidence 4457899999986543
No 353
>PLN02477 glutamate dehydrogenase
Probab=96.65 E-value=0.12 Score=45.81 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcCC----------chhHHHHHHCC--------CcccCCHHHH-hhcCceE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT 60 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~~dvi 60 (257)
++|+|.|.|++|..+|+.|.+.|..|+ +.|.+ .+.+.+..+.+ .... +.+++ ..+||++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl 285 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL 285 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence 479999999999999999999999987 56766 44443433321 1111 23333 3478988
Q ss_pred EEccCCh
Q 025163 61 IGMLADP 67 (257)
Q Consensus 61 i~~v~~~ 67 (257)
+-|--..
T Consensus 286 iP~Al~~ 292 (410)
T PLN02477 286 IPAALGG 292 (410)
T ss_pred eeccccc
Confidence 8875444
No 354
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.65 E-value=0.0033 Score=52.90 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=45.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHh------hc-CceEEEccCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVI------KK-CTITIGMLAD 66 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~------~~-~dvii~~v~~ 66 (257)
+|.|+|+ |.+|..+++.|.+.|++|++..|++++... .++.. .+++.+++ ++ +|.++++.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 5788987 999999999999999999999999876432 12211 12344455 45 8999988774
No 355
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.65 E-value=0.0046 Score=53.64 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=55.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHCCCc--cc-CCHHHHhhcCceEEEccCChHHHHH--
Q 025163 2 EVGFLG-LGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAHGAT--VG-GSPAEVIKKCTITIGMLADPAAALS-- 72 (257)
Q Consensus 2 kI~iIG-~G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~g~~--~~-~~~~~~~~~~dvii~~v~~~~~~~~-- 72 (257)
||+||| .|..|..+.+.|.+++|+ +.++.++.+.-+.+...|.. .. .+. +.++++|++|+|+|.....+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHHHHHHH
Confidence 689999 599999999999998886 33444544433333322321 11 122 345789999999998877665
Q ss_pred HHHhcCCcEEecc
Q 025163 73 AITSKGGHFLEAP 85 (257)
Q Consensus 73 ~~~~~g~~~~~~p 85 (257)
.+...|..++|.+
T Consensus 80 ~~~~~G~~VID~s 92 (339)
T TIGR01296 80 KAAKCGAIVIDNT 92 (339)
T ss_pred HHHHCCCEEEECC
Confidence 4556677788644
No 356
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.64 E-value=0.0064 Score=52.63 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=53.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH-CCCe---EEEEcCCch--hHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWNRTLS--KCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~-~g~~---V~~~~r~~~--~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
|||+|||+ |..|..+.+.|.+ ..++ +..+....+ +.-.+......+. .++.+ .++.|++|+|+|.....+.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChHHHHHH
Confidence 58999998 9999999999995 5566 555533222 2112221122221 24444 4789999999998866554
Q ss_pred --HHHhcCCcEEe
Q 025163 73 --AITSKGGHFLE 83 (257)
Q Consensus 73 --~~~~~g~~~~~ 83 (257)
.+...|..++|
T Consensus 85 ~~~~~~~G~~VID 97 (347)
T PRK06728 85 VNQAVSSGAIVID 97 (347)
T ss_pred HHHHHHCCCEEEE
Confidence 44566777777
No 357
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.62 E-value=0.0056 Score=47.00 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=50.9
Q ss_pred CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCC
Q 025163 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGG 79 (257)
Q Consensus 1 mkI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~ 79 (257)
+++.|||-+ .+|.+++..|.++|..|++++.+. .++.+.++.+|+||.++..+.......-..|.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~ga 102 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKADWIKPGA 102 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTE
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccccccccCCc
Confidence 368999987 599999999999999999997753 36778889999999999887776554445577
Q ss_pred cEEecccc
Q 025163 80 HFLEAPVS 87 (257)
Q Consensus 80 ~~~~~pv~ 87 (257)
..+|..+.
T Consensus 103 vVIDvG~~ 110 (160)
T PF02882_consen 103 VVIDVGIN 110 (160)
T ss_dssp EEEE--CE
T ss_pred EEEecCCc
Confidence 77776654
No 358
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.62 E-value=0.0078 Score=56.89 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=49.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh---------------------HHHHHHCCCcccC--------CHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVGG--------SPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~~--------~~~ 51 (257)
+||.|||.|..|...|..|++.|++|+++++++.. ++.+.+.|+.... +.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~ 273 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE 273 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence 47999999999999999999999999999986431 3445555654321 233
Q ss_pred HHhhcCceEEEccCCh
Q 025163 52 EVIKKCTITIGMLADP 67 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~ 67 (257)
+.....|.||+++-..
T Consensus 274 ~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 274 ELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHhhcCEEEEEcCCC
Confidence 4445689999988654
No 359
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=96.60 E-value=0.00054 Score=52.04 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhc----CCCchhhhcc--CCcccCCCCCC-------
Q 025163 130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR-TLLDVLDLG----GIANPMFKGK--GPTMLQSNYAP------- 195 (257)
Q Consensus 130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~-~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~------- 195 (257)
|....+++..|+..+++..++.|+..+++..|-+++ +++.+...+ ++.++..+++ +..+..++.+.
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~ 100 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM 100 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence 555667788999999999999999999999999888 665544432 2334334433 33444442211
Q ss_pred -CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163 196 -AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 232 (257)
Q Consensus 196 -~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 232 (257)
....-+....++.+.+++++.++++|+++++++++..
T Consensus 101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~ 138 (149)
T PF07479_consen 101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYE 138 (149)
T ss_dssp TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS
T ss_pred hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcC
Confidence 1123345667789999999999999999999999874
No 360
>PLN02427 UDP-apiose/xylose synthase
Probab=96.59 E-value=0.0054 Score=54.07 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=47.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCC-------Ccc-------cCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~-------~~~~~~~~~~~dvii~~v 64 (257)
|||.|.|. |.+|..+++.|.++ |++|++++|+.++.+.+...+ +.. ..++.++++++|+||=|.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 78999985 99999999999998 599999999877766654321 111 112345667899988765
No 361
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.0079 Score=58.58 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=52.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPAE 52 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~~ 52 (257)
+|+|||.|.-|.+-|..|-+.||.|++|.|+.. +++.+.++|+... -+.++
T Consensus 1787 ~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~ 1866 (2142)
T KOG0399|consen 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDE 1866 (2142)
T ss_pred EEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHH
Confidence 799999999999999999999999999998753 2333455676543 36778
Q ss_pred HhhcCceEEEccCCh
Q 025163 53 VIKKCTITIGMLADP 67 (257)
Q Consensus 53 ~~~~~dvii~~v~~~ 67 (257)
+-+.-|.|++|+-+.
T Consensus 1867 l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1867 LKKENDAIVLATGST 1881 (2142)
T ss_pred HhhccCeEEEEeCCC
Confidence 888899999997543
No 362
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.57 E-value=0.0058 Score=52.77 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=52.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC---eEEEEcCCchhHHH--HHHCCCcccCCHHHH-hhcCceEEEccCChHHHHH-
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDE--LVAHGATVGGSPAEV-IKKCTITIGMLADPAAALS- 72 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~- 72 (257)
|||+|||+ |..|..+.+.|.++.| ++..+....+.-+. +......+. ++++. .+++|++|+|+|.....+.
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~ 83 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYA 83 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHHHHH
Confidence 58999998 9999999999999654 55555332221111 211112222 34343 2689999999998866554
Q ss_pred -HHHhcCCcEEe
Q 025163 73 -AITSKGGHFLE 83 (257)
Q Consensus 73 -~~~~~g~~~~~ 83 (257)
.+...|+.++|
T Consensus 84 ~~~~~~g~~VID 95 (336)
T PRK08040 84 EEATNAGCLVID 95 (336)
T ss_pred HHHHHCCCEEEE
Confidence 44456777777
No 363
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.56 E-value=0.026 Score=47.30 Aligned_cols=116 Identities=19% Similarity=0.282 Sum_probs=77.5
Q ss_pred eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-+ .+|.+++..|.++|..|+++.... .++.+.++.+|+||.++..+.......-..|..
T Consensus 159 ~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gav 224 (281)
T PRK14183 159 DVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLITEDMVKEGAI 224 (281)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccCHHHcCCCcE
Confidence 68999998 899999999999999999886421 256778899999999999887766655567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. ..||-+ ++.+.+..+.+.. .-|.+|.-...-+..|++.
T Consensus 225 vIDvGin~~~----~gk----l~GDVd-~~~~~~~a~~iTP---VPGGVGpvT~a~L~~N~~~ 275 (281)
T PRK14183 225 VIDIGINRTE----DGR----LVGDVD-FENVAKKCSYITP---VPGGVGPMTIAMLLSNTLK 275 (281)
T ss_pred EEEeeccccC----CCC----eECCcc-HHHHHhhceEecC---CCCCChHHHHHHHHHHHHH
Confidence 8887765321 122 223322 2334333332221 1244666666667777653
No 364
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.55 E-value=0.0081 Score=55.28 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=47.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCccc--CCHHHH-hhcCceEEEccCCh
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEV-IKKCTITIGMLADP 67 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~-~~~~dvii~~v~~~ 67 (257)
++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+. +.... .+..+. ...+|+|+-|+|..
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 47799999999999999999999999999999998888653 21111 122221 13467777676644
No 365
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.55 E-value=0.0061 Score=52.91 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=45.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-CCcc-----cCC---HHHHhhcCceEEEc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----GGS---PAEVIKKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-----~~~---~~~~~~~~dvii~~ 63 (257)
|||.|.|+ |.+|+.++..|.++ |++|++++|+.++...+... ++.. ..+ ..++++++|+||=|
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 68999997 99999999999986 69999999977655544322 2221 112 23456789999854
No 366
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.53 E-value=0.0062 Score=52.44 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCchh--HH----HHHHC------CCcccCCHHHHhhcCceEE
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~~--~~----~l~~~------g~~~~~~~~~~~~~~dvii 61 (257)
||+|||+ |.+|..++..|...+. ++.++|++++. ++ ++... +.....+..+.++++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999996442 21 11111 1222235467788999999
Q ss_pred EccC
Q 025163 62 GMLA 65 (257)
Q Consensus 62 ~~v~ 65 (257)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 9764
No 367
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.51 E-value=0.025 Score=49.34 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=53.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH-CCCcccCCHH---------HHh--hcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSPA---------EVI--KKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~~dvii~~v~~~~ 68 (257)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .|.....+.. +.. ..+|++|-|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 58899999999999888888885 68888999999998887 4544333221 111 25999999999776
Q ss_pred HHHH
Q 025163 69 AALS 72 (257)
Q Consensus 69 ~~~~ 72 (257)
....
T Consensus 251 ~~~~ 254 (350)
T COG1063 251 ALDQ 254 (350)
T ss_pred HHHH
Confidence 5554
No 368
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.033 Score=47.68 Aligned_cols=162 Identities=21% Similarity=0.268 Sum_probs=88.5
Q ss_pred eEEEEcCChhHHHHHHHHHH-CCCeEEEE-cCCchhHHHHHHC-----------------------C-CcccCCHHHHh-
Q 025163 2 EVGFLGLGIMGKAISMNLLR-NGFKVTVW-NRTLSKCDELVAH-----------------------G-ATVGGSPAEVI- 54 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~-~g~~V~~~-~r~~~~~~~l~~~-----------------------g-~~~~~~~~~~~- 54 (257)
|||+||+|.||+.+.....+ .|.+|... ||+.+...+..+. | +.++.|..+++
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~ 98 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA 98 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence 79999999999999988875 48886554 8888776554431 1 22333444443
Q ss_pred -hcCceEEEccCChHHHHH---HHHhcCCcEEe----ccccCCcc----ccccCcEEEEe-cCChhhHHHHHHHHHHhcC
Q 025163 55 -KKCTITIGMLADPAAALS---AITSKGGHFLE----APVSGSKQ----PAETGQLVILS-AGEKALYDEAISALNVIGK 121 (257)
Q Consensus 55 -~~~dvii~~v~~~~~~~~---~~~~~g~~~~~----~pv~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~ 121 (257)
...|+||-++--+..-.. ..-.++-+.+- +-++=+|- ....|-..... |..+..+-++-++.+++|.
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a~G~ 178 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFASALGF 178 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHHHhcCC
Confidence 235777777654433222 11123333322 12221111 11122211222 2346667788889999998
Q ss_pred CeEEeCCCC--------------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH
Q 025163 122 KAFFLGEVG--------------NGAKMKLVVNMIMGCM----MNTFSEGLVLAEKSGLDP 164 (257)
Q Consensus 122 ~~~~~g~~g--------------~a~~~kl~~n~~~~~~----~~~~~E~~~l~~~~g~~~ 164 (257)
.++..|. | ..+.-+--.|.-+... .-.+.|+..++.+.|+.+
T Consensus 179 evv~aGK-GkNnpl~~~a~Pdt~~eeA~r~~~n~~Ml~sF~DGsKtmvEMaavANaTGl~p 238 (438)
T COG4091 179 EVVSAGK-GKNNPLNIDANPDTYEEEAKRRNMNPRMLVSFQDGSKTMVEMAAVANATGLVP 238 (438)
T ss_pred eEEeccC-CcCCCCccCCCCchHHHHHhhcCCChHHhhhhhcccHHHHHHHHHhcccCCCC
Confidence 8776664 2 1122222222222211 346778888888888654
No 369
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.49 E-value=0.004 Score=55.37 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=32.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|+|.|||.|.+|...|..|+++|++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 8999999999999999999999999999999753
No 370
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.48 E-value=0.004 Score=55.32 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~ 33 (257)
+|.|||.|.+|.+.|..|++.|++|++++++.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 79999999999999999999999999999975
No 371
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.48 E-value=0.18 Score=41.00 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=51.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHHHCC-Ccc---cCCHHHHhhcCceEEEccCChHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATV---GGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~~~g-~~~---~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+++-|||.|.++.-=+..|.+.|.+|+++.... +.++.+.+.| ++. ..++.+ ++++++||.|+.+...-+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~d-l~g~~LViaATdD~~vN~~ 101 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEF-IKDKHLIVIATDDEKLNNK 101 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH-hCCCcEEEECCCCHHHHHH
Confidence 368999999999999999999999999997643 2445555543 222 223334 4789999999987766554
No 372
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.47 E-value=0.042 Score=50.13 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=71.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~ 51 (257)
++|.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.... +..
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 223 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISAD 223 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCHH
Confidence 3799999999999999999999999999986532 12334445654321 223
Q ss_pred HHhhcCceEEEccCChHHHHH---------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHH
Q 025163 52 EVIKKCTITIGMLADPAAALS---------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISAL 116 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~~~~~~---------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 116 (257)
+.....|.||+++-....... .+...+....+.....-......+.-++++|+-.-..+.++..+
T Consensus 224 ~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~ 303 (485)
T TIGR01317 224 ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSL 303 (485)
T ss_pred HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHH
Confidence 344568999999864411000 11111111111110000011123444677777666667777777
Q ss_pred HHhcCCeEEe
Q 025163 117 NVIGKKAFFL 126 (257)
Q Consensus 117 ~~~~~~~~~~ 126 (257)
+..+..+..+
T Consensus 304 ~~ga~~V~vv 313 (485)
T TIGR01317 304 RHGAASVHQF 313 (485)
T ss_pred HcCCCEEEEE
Confidence 7665555443
No 373
>PRK06753 hypothetical protein; Provisional
Probab=96.47 E-value=0.0041 Score=54.49 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=32.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|+|.|||.|..|.++|..|.++|++|++++++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 8999999999999999999999999999998765
No 374
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.45 E-value=0.15 Score=45.68 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=49.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEE-c----------CCchhHHHHHHC--C----------CcccCCHHHHh-hc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH--G----------ATVGGSPAEVI-KK 56 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~-~----------r~~~~~~~l~~~--g----------~~~~~~~~~~~-~~ 56 (257)
++|+|.|.|++|..+|+.|.+.|..|+.+ | .+.+.+.+..+. | ... .+.+++. .+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~d 311 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSVP 311 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCccccccC
Confidence 47999999999999999999999998877 7 566655544432 1 111 1233333 37
Q ss_pred CceEEEccCChHHHHH
Q 025163 57 CTITIGMLADPAAALS 72 (257)
Q Consensus 57 ~dvii~~v~~~~~~~~ 72 (257)
|||++-|.........
T Consensus 312 ~DVliPaAl~n~It~~ 327 (445)
T PRK09414 312 CDIALPCATQNELDEE 327 (445)
T ss_pred CcEEEecCCcCcCCHH
Confidence 9999999876655444
No 375
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.44 E-value=0.016 Score=51.25 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=56.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Ccc-------c-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--ATV-------G- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~~-------~- 47 (257)
||.|||+|.+|+.++.+|+..|. +++++|.+.= |++. +.+.+ +++ .
T Consensus 44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 123 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDP 123 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCCh
Confidence 79999999999999999999996 6888876531 1111 12111 111 1
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||.|+-+...... .....++.|+.+.+.+
T Consensus 124 ~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 124 SNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred hHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1334677899999999876644322 4455677777755443
No 376
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.44 E-value=0.005 Score=50.95 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=44.6
Q ss_pred cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEc
Q 025163 7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGM 63 (257)
Q Consensus 7 G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~ 63 (257)
|.|-+|.+|...|.+.||+|++..|++.+.+......+......++... ++|+||=.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINL 63 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINL 63 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEEC
Confidence 7799999999999999999999999998877665544444444555555 69988854
No 377
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.42 E-value=0.0094 Score=58.53 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=50.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (257)
.||+|||.|.-|.+.|..|++.||+|++|++.+. .++.+.+.|+... -+.+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 3799999999999999999999999999988642 2344555666422 2455
Q ss_pred HHhh-cCceEEEccCC
Q 025163 52 EVIK-KCTITIGMLAD 66 (257)
Q Consensus 52 ~~~~-~~dvii~~v~~ 66 (257)
++.+ +.|.||+++-.
T Consensus 387 ~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 387 DLKAAGFWKIFVGTGA 402 (944)
T ss_pred HhccccCCEEEEeCCC
Confidence 6654 68999999865
No 378
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.054 Score=45.81 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=78.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|+++... +.++.+.+++||+||.++..+.......-..|..
T Consensus 160 ~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gav 225 (297)
T PRK14186 160 KAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGAEMVKPGAV 225 (297)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 6889987 568999999999999999998542 1267788899999999999887666556667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+..-......+. ..||-+ ++.+.+.-..+.+ .-|.+|.-...-+..|++.
T Consensus 226 VIDvGin~~~~~~~~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~Nl~~ 280 (297)
T PRK14186 226 VVDVGIHRLPSSDGKTR----LCGDVD-FEEVEPVAAAITP---VPGGVGPMTVTMLLVNTVL 280 (297)
T ss_pred EEEeccccccccccCCc----eeCCcc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHHH
Confidence 88977664221111232 234433 2334333332221 1244677677777777663
No 379
>PRK06182 short chain dehydrogenase; Validated
Probab=96.39 E-value=0.014 Score=48.75 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=35.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g 43 (257)
+|.|.|+ |.+|..+++.|++.|++|++.+|++++++.+...+
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~ 47 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG 47 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC
Confidence 4667775 99999999999999999999999988877665443
No 380
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.39 E-value=0.011 Score=54.47 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=34.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
.|.|.|+ |.+|..+++.|++.|++|++++|+.++++.+.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3667775 99999999999999999999999998877654
No 381
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.37 E-value=0.0065 Score=39.57 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=27.2
Q ss_pred EEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 5 iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|||+|.-|...|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
No 382
>PRK07411 hypothetical protein; Validated
Probab=96.36 E-value=0.019 Score=50.86 Aligned_cols=87 Identities=9% Similarity=0.143 Sum_probs=56.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHH----HHHHC--CCc-------cc-
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCD----ELVAH--GAT-------VG- 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~----~l~~~--g~~-------~~- 47 (257)
||.|||+|.+|+.++.+|+..|. +++++|.+.= |++ .+++. .++ ..
T Consensus 40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~ 119 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSS 119 (390)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCH
Confidence 79999999999999999999996 6888876521 111 12221 111 11
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||.|+-+...... .....+..++.+.+++
T Consensus 120 ~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g 163 (390)
T PRK07411 120 ENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFR 163 (390)
T ss_pred HhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEcc
Confidence 1334667899999999887755332 3445566666655444
No 383
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.35 E-value=0.034 Score=50.37 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCCc-
Q 025163 132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPAF- 197 (257)
Q Consensus 132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~~- 197 (257)
++.+|.++|.+....+.+++|.+.+.++ ++++..++.++++.++. .+++++... +.+.+--+++.|
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 7899999999999999999999999988 78999999999998864 344443211 111111111222
Q ss_pred -ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163 198 -PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 236 (257)
Q Consensus 198 -~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 236 (257)
.+......++.++..+-+.|+|+|.+.+...-+....+.
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~ 431 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA 431 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 123344566889999999999999999998888877663
No 384
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.35 E-value=0.015 Score=48.95 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=58.2
Q ss_pred eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-+. +|.+++..|..+|..|++++.. +.++.+.++++|+||.++.-+.......-..|..
T Consensus 166 ~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gav 231 (287)
T PRK14176 166 NAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKADMVKEGAV 231 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCHHHcCCCcE
Confidence 689999998 9999999999999999999853 1257788899999999887766555445566888
Q ss_pred EEecccc
Q 025163 81 FLEAPVS 87 (257)
Q Consensus 81 ~~~~pv~ 87 (257)
++|..+.
T Consensus 232 VIDvGin 238 (287)
T PRK14176 232 IFDVGIT 238 (287)
T ss_pred EEEeccc
Confidence 8887764
No 385
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=96.34 E-value=0.031 Score=50.40 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCCc-
Q 025163 132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPAF- 197 (257)
Q Consensus 132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~~- 197 (257)
++.+|.++|.+.+..+.+++|.+.+.++ ++++...+.++++.|+. .|+++.... +.+.+--+++.|
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~ 383 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK 383 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence 7899999999999999999999999987 35889999999998864 444444311 111111111222
Q ss_pred -ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163 198 -PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 235 (257)
Q Consensus 198 -~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 235 (257)
.+......++.++..+-+.|+|+|.+.....-+.....
T Consensus 384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~ 422 (459)
T PRK09287 384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRT 422 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 12333455688999999999999999998866665543
No 386
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.31 E-value=0.16 Score=42.65 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=52.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcccCCH---HHHh------hcCceEEEccCChHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSP---AEVI------KKCTITIGMLADPAAAL 71 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~---~~~~------~~~dvii~~v~~~~~~~ 71 (257)
++.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+...-+. .+.+ ...|++|-|+..+....
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~ 202 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVR 202 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHH
Confidence 578999999999999998888986 8888999999888888886433221 1211 25799999997665444
Q ss_pred H
Q 025163 72 S 72 (257)
Q Consensus 72 ~ 72 (257)
.
T Consensus 203 ~ 203 (280)
T TIGR03366 203 A 203 (280)
T ss_pred H
Confidence 3
No 387
>PRK08017 oxidoreductase; Provisional
Probab=96.31 E-value=0.011 Score=48.76 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=36.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g 43 (257)
+|.|.|+ |.+|..+++.|.++|++|++.+|++++.+.+.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLG 46 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCC
Confidence 5888988 99999999999999999999999988877665443
No 388
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.30 E-value=0.096 Score=45.56 Aligned_cols=71 Identities=31% Similarity=0.346 Sum_probs=53.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcC---CchhHHHHHHCCCcccCC----HHH--HhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATVGGS----PAE--VIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r---~~~~~~~l~~~g~~~~~~----~~~--~~~~~dvii~~v~~~~~~~~ 72 (257)
++.|+|+|.+|...++.+...|.+|++++| ++++.+.+.+.|+..... ..+ .....|+||-|+..+.....
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 254 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAFE 254 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHHH
Confidence 588999999999999999889999999998 678888777778654321 111 12357999999987654443
No 389
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.30 E-value=0.1 Score=42.74 Aligned_cols=127 Identities=16% Similarity=0.199 Sum_probs=72.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHH----HCC--Ccc--------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELV----AHG--ATV--------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~----~~g--~~~--------~ 47 (257)
||.|+|+|.+|+.++.+|++.|. +++++|.+.= |++.++ +.+ +++ .
T Consensus 13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~ 92 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP 92 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence 79999999999999999999996 7888876531 122111 111 111 1
Q ss_pred CCHHHHh-hcCceEEEccCChHHHHH---HHHhcCCcEEeccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcC-
Q 025163 48 GSPAEVI-KKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGK- 121 (257)
Q Consensus 48 ~~~~~~~-~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~- 121 (257)
.+..+.. .+.|+||.|+-+...... .....++.++..--.++......-+..-+. .-.......++..|+.-+.
T Consensus 93 ~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 93 DNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred hHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHHHHHHcCCC
Confidence 2334444 368999999877654333 555678888876444332211110110010 1122344677888876443
Q ss_pred ---CeEEeCC
Q 025163 122 ---KAFFLGE 128 (257)
Q Consensus 122 ---~~~~~g~ 128 (257)
+++|..+
T Consensus 173 ~~~~~v~S~E 182 (231)
T cd00755 173 FGVPVVYSTE 182 (231)
T ss_pred CCeEEEeCCC
Confidence 3555544
No 390
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.013 Score=49.08 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=36.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g 43 (257)
++.|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+.+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~ 48 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEG 48 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Confidence 4667777 99999999999999999999999998888776544
No 391
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.29 E-value=0.016 Score=50.17 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=50.0
Q ss_pred CeEEEEcCChhHHHHHHHHHH--------CCC--eE-EEEcCCchh-------HHHH---HHC-CC--cc-------cCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLR--------NGF--KV-TVWNRTLSK-------CDEL---VAH-GA--TV-------GGS 49 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~--------~g~--~V-~~~~r~~~~-------~~~l---~~~-g~--~~-------~~~ 49 (257)
++|+|+|+|++|..+++.|.+ .|. +| .+.|++... +.++ .+. +. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999999887 463 33 333544221 1222 221 10 01 126
Q ss_pred HHHHh--hcCceEEEccCChHHHHH--HHHhcCCcEEe
Q 025163 50 PAEVI--KKCTITIGMLADPAAALS--AITSKGGHFLE 83 (257)
Q Consensus 50 ~~~~~--~~~dvii~~v~~~~~~~~--~~~~~g~~~~~ 83 (257)
+.+.+ .++|+||-+++.....+. .+...|.+++.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt 120 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT 120 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence 66776 478999999876544333 44456777665
No 392
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.01 Score=52.77 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=42.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh--hcCceEEEc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM 63 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~~dvii~~ 63 (257)
|||.|+|.|.-|.++|+.|. .|++|+++|.++.... +.+.|+... . .+.. +++|+||..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence 89999999999999999999 9999999996543221 223365542 2 2222 357877765
No 393
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.26 E-value=0.012 Score=54.62 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=49.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc---------------------hhHHHHHHCCCcccC--------CHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVGG--------SPAE 52 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~~--------~~~~ 52 (257)
+|.|||+|..|...|..|.+.|++|+++++.+ .+++.+.+.|+.... +..+
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~ 218 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQ 218 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence 79999999999999999999999999998642 234555666754221 1233
Q ss_pred HhhcCceEEEccCChH
Q 025163 53 VIKKCTITIGMLADPA 68 (257)
Q Consensus 53 ~~~~~dvii~~v~~~~ 68 (257)
.....|+||+++-...
T Consensus 219 ~~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 219 LEGEFDAVFVAIGAQL 234 (564)
T ss_pred HHhhCCEEEEeeCCCC
Confidence 3446899999987553
No 394
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.26 E-value=0.017 Score=49.68 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=49.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC------C--Ce-EEEEcCCchh-------HHHH---HHCC-C--cccC--CHHHHh-h
Q 025163 1 MEVGFLGLGIMGKAISMNLLRN------G--FK-VTVWNRTLSK-------CDEL---VAHG-A--TVGG--SPAEVI-K 55 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~------g--~~-V~~~~r~~~~-------~~~l---~~~g-~--~~~~--~~~~~~-~ 55 (257)
|||++||+|++|..+++.|.++ | .+ |.+.|++... ++++ .+.| . .... ++.++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 8999999999999999999873 3 34 3344665321 1222 2212 1 1112 455553 4
Q ss_pred cCceEEEccCChHH----HH--HHHHhcCCcEEec
Q 025163 56 KCTITIGMLADPAA----AL--SAITSKGGHFLEA 84 (257)
Q Consensus 56 ~~dvii~~v~~~~~----~~--~~~~~~g~~~~~~ 84 (257)
++|++|-|+|+... .. ..+-..|.+++.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 68999999985321 11 1344577777653
No 395
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.23 E-value=0.015 Score=41.44 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCchhHHHHH---HCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 10 ~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~~ 70 (257)
+-+..++..|.+.|.+|.+||..-....... ..+++..+++.++++++|+||++++.+.-.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~ 80 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFR 80 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGG
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHh
Confidence 3467789999999999999998755544433 257888889999999999999999877543
No 396
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.21 E-value=0.02 Score=48.92 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=45.9
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHH---HHHHC-----CCc-----c--cCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD---ELVAH-----GAT-----V--GGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~---~l~~~-----g~~-----~--~~~~~~~~~~~dvii~~v 64 (257)
|+|.|.| +|.+|..++..|.++|++|++.+|+++... .+... .+. . ..+..++++++|+||-+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence 5788998 599999999999999999999988765432 22211 111 1 123556677899988875
Q ss_pred C
Q 025163 65 A 65 (257)
Q Consensus 65 ~ 65 (257)
.
T Consensus 85 ~ 85 (322)
T PLN02662 85 S 85 (322)
T ss_pred C
Confidence 3
No 397
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.012 Score=47.76 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=36.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
||+.|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 78999976 999999999999999999999999888776654
No 398
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.092 Score=44.13 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=78.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|+++... +.++.+.++++|+||.++..+.......-..|..
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~Gav 224 (284)
T PRK14170 159 RAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKKDYIKPGAI 224 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 6889987 568999999999999999998642 1357788899999999999887766555567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
++|..+.... .|. ..||-+ ++.+.+.-+.+.+ .-|.+|.-...-+..|++.+
T Consensus 225 VIDvGin~~~----~gk----l~GDvd-fe~~~~~a~~iTP---VPGGVGpvT~a~L~~N~~~a 276 (284)
T PRK14170 225 VIDVGMDRDE----NNK----LCGDVD-FDDVVEEAGFITP---VPGGVGPMTITMLLANTLKA 276 (284)
T ss_pred EEEccCcccC----CCC----eecccc-hHHHHhhccEecC---CCCChHHHHHHHHHHHHHHH
Confidence 8997766421 122 234332 3334443333322 12446666667777776643
No 399
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.16 E-value=0.023 Score=51.22 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=52.9
Q ss_pred eEEEEcC----ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~----G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
+|+|||+ |.+|..+.++|.+.|| +|+.++.+.+.+ .|.+...+++|+-...|++++++|.....+.
T Consensus 9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~ 80 (447)
T TIGR02717 9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKYVPQV 80 (447)
T ss_pred EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHHHHHH
Confidence 6999999 8899999999999998 566666543321 3788888999987788999999997766554
No 400
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.15 E-value=0.022 Score=51.77 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=48.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~ 51 (257)
++|.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.... +..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~ 223 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAE 223 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHH
Confidence 4799999999999999999999999999987642 12334445543211 234
Q ss_pred HHhhcCceEEEccCCh
Q 025163 52 EVIKKCTITIGMLADP 67 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~ 67 (257)
+.....|.||+++-..
T Consensus 224 ~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 224 ELLAEYDAVFLGTGAY 239 (471)
T ss_pred HHHhhCCEEEEecCCC
Confidence 4445789999987543
No 401
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.14 E-value=0.043 Score=46.32 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=55.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhH-----------------------HHHHHCC--Cc--ccC--CHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKC-----------------------DELVAHG--AT--VGG--SPA 51 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~-----------------------~~l~~~g--~~--~~~--~~~ 51 (257)
+|.|+|+|.+|..++++|+..|. .|+++|.+.=.. +++++.+ ++ ..+ -..
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~~~~ 100 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPLTT 100 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence 79999999999999999999996 699998653211 1222221 11 111 124
Q ss_pred HHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163 52 EVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS 87 (257)
Q Consensus 52 ~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~ 87 (257)
+.+++.|+||.|..+...... .....++.++.+...
T Consensus 101 ~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~ 139 (286)
T cd01491 101 DELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTR 139 (286)
T ss_pred HHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 667899999888764433222 555567777765543
No 402
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0095 Score=50.13 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=52.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc------ccCCHHHHhhcCceEEEcc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT------VGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~------~~~~~~~~~~~~dvii~~v 64 (257)
||.|||.|.+|+.-|+...--|.+|++.|+|.+++..+-.. +.+ ...++++.+..+|++|-+|
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 78999999999999999998899999999999998887654 322 2335678889999999876
No 403
>PRK07538 hypothetical protein; Provisional
Probab=96.13 E-value=0.0074 Score=53.74 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|+|.|||+|..|.++|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8999999999999999999999999999998764
No 404
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.13 E-value=0.014 Score=48.05 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=36.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
|+|-|+|+ |.+|..++..|.+.|++|++.+|++++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78999985 999999999999999999999999887776643
No 405
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.09 E-value=0.0074 Score=53.01 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=43.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-----cc--CCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VG--GSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~~dvii~~v 64 (257)
|||.|.|. |.+|..+++.|.++||+|++.+|.......-...+.. +. .+...+++++|+||-+.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 78999987 9999999999999999999999864321100000111 11 12233456789998886
No 406
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.07 E-value=0.071 Score=42.17 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=58.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--e---EEEEcCCchhHHHHHHCCCcccCCHHH-Hh-----hcCceEEEccCChHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF--K---VTVWNRTLSKCDELVAHGATVGGSPAE-VI-----KKCTITIGMLADPAAA 70 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~--~---V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~-----~~~dvii~~v~~~~~~ 70 (257)
|++|||.|++|+-+--.+.++|. + ....|...+-+.+..+.|+..+..--+ ++ .+.|+||-+++.....
T Consensus 6 kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~~h~ 85 (310)
T COG4569 6 KVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAGAHV 85 (310)
T ss_pred eEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccccchhh
Confidence 79999999999999999999874 2 223455555677777777654432222 22 3556999999988777
Q ss_pred HH--HHHhcCCcEEe
Q 025163 71 LS--AITSKGGHFLE 83 (257)
Q Consensus 71 ~~--~~~~~g~~~~~ 83 (257)
+. .+...|+..+|
T Consensus 86 ~~a~~~ae~gi~~id 100 (310)
T COG4569 86 KNAAALAEAGIRLID 100 (310)
T ss_pred cchHhHHhcCCceee
Confidence 66 67778888777
No 407
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.06 E-value=0.0094 Score=51.28 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
+|.|||+|.-|.++|..|+++|++|++++++++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 799999999999999999999999999998765
No 408
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.018 Score=48.06 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=35.1
Q ss_pred Ce-EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163 1 ME-VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (257)
Q Consensus 1 mk-I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g 43 (257)
|| +-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 45 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG 45 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC
Confidence 55 45555 499999999999999999999999988877665543
No 409
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.04 E-value=0.022 Score=49.55 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=46.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcc-c------CCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV-G------GSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~-~------~~~~~~~~~~dvii~~v 64 (257)
|||.|.| +|.+|..+++.|+++|++|++.+|++++.+.+... ++.. . ....+++++.|+||-+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 6899998 59999999999999999999999987765544321 1111 1 12345566789888765
No 410
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=96.04 E-value=0.031 Score=49.81 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=79.2
Q ss_pred eEEEEcCChhH-HHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHH-hhcCceEEEcc--CChHHHHHHHHh
Q 025163 2 EVGFLGLGIMG-KAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEV-IKKCTITIGML--ADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~G~mG-~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~-~~~~dvii~~v--~~~~~~~~~~~~ 76 (257)
||-|||-|..| +++|..|.+.||+|+..|.+... .++|.+.|+.+.....+. +.+.++||... +.+...-.....
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e 88 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAALE 88 (459)
T ss_pred eEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHHHH
Confidence 58899998888 57999999999999999987554 567888898765433222 45666666543 332222225777
Q ss_pred cCCcEEeccccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCC-eEEeC
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKK-AFFLG 127 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~-~~~~g 127 (257)
+++.++.-|-.-..-... ...+.++| ...+-..+..+|...|.. .+.+|
T Consensus 89 ~~ipi~~r~e~Laelm~~--~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 89 RGIPVISRAEMLAELMRF--RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred cCCCeEcHHHHHHHHHhC--CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 888888766332222222 22444443 455556788899888644 34455
No 411
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.03 E-value=0.097 Score=45.31 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=58.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccC-----CHHHHhh---cCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-----SPAEVIK---KCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~~---~~dvii~~v~~~~~~~~ 72 (257)
++.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+..+ ..|++|-|+..+.....
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~ 251 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINT 251 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHH
Confidence 58899999999999999888897 688899999999988888864321 2333322 37999999987654443
Q ss_pred --HHHhcCCcEEe
Q 025163 73 --AITSKGGHFLE 83 (257)
Q Consensus 73 --~~~~~g~~~~~ 83 (257)
.....+..++.
T Consensus 252 ~~~~l~~~G~iv~ 264 (343)
T PRK09880 252 CLEVTRAKGVMVQ 264 (343)
T ss_pred HHHHhhcCCEEEE
Confidence 22234444444
No 412
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.012 Score=49.81 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=44.5
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC-----c--ccCCHHHHhhcC-ceEEEcc
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-----T--VGGSPAEVIKKC-TITIGML 64 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~-----~--~~~~~~~~~~~~-dvii~~v 64 (257)
|+|.|.| .|.+|..++..|.+.||+|.+++|......... .+. . -.....+.++.. |.||-+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 6789999 599999999999999999999999877655432 111 1 112233344555 8888764
No 413
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.02 E-value=0.099 Score=44.04 Aligned_cols=117 Identities=17% Similarity=0.278 Sum_probs=78.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|++++.. +.++.+.++++|+||.++..+.......-..|..
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~Gav 226 (288)
T PRK14171 161 NVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTAEYFNPESI 226 (288)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCE
Confidence 6889987 568999999999999999988642 1357788899999999998887666556667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
.+|..+.... .+. ..||-+ ++.+++..+.+.. .-|.+|.-...-+..|++.+
T Consensus 227 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~a 278 (288)
T PRK14171 227 VIDVGINRIS----GNK----IIGDVD-FENVKSKVKYITP---VPGGIGPMTIAFLLKNTVKA 278 (288)
T ss_pred EEEeeccccC----CCC----eECCcc-HHHHHhhceEeCC---CCCCcHHHHHHHHHHHHHHH
Confidence 8887765321 122 224433 3344444333322 13446766777777777644
No 414
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.01 E-value=0.083 Score=44.47 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=78.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|++++.. +.++.+.++++|+||.++..+.......-..|..
T Consensus 160 ~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gav 225 (284)
T PRK14190 160 HVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITADMVKEGAV 225 (284)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCE
Confidence 6889986 678999999999999999998642 1367788899999999998887665555567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. ..||-+ ++.+.+.-..+.+ .-|.+|.-...-+..|++.
T Consensus 226 VIDvGi~~~~----~gk----l~GDvd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~~ 276 (284)
T PRK14190 226 VIDVGVNRLE----NGK----LCGDVD-FDNVKEKASYITP---VPGGVGPMTITMLMHNTVE 276 (284)
T ss_pred EEEeeccccC----CCC----eeccCc-HHHHhhhceEecC---CCCCChHHHHHHHHHHHHH
Confidence 8887765321 122 234433 2344444333322 1344677777777777663
No 415
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.095 Score=44.04 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=78.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|+++.... .++.+..++||+||.++..+.......-..|..
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~Gav 224 (282)
T PRK14166 159 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVI 224 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence 6889987 5689999999999999999887532 357788899999999999887766656677888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. ..||-+ ++.+.+..+.+.+ .-|.+|.-...-+..|++.
T Consensus 225 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~ 275 (282)
T PRK14166 225 VVDVGINRLE----SGK----IVGDVD-FEEVSKKSSYITP---VPGGVGPMTIAMLLENTVK 275 (282)
T ss_pred EEEecccccC----CCC----eeCCCC-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHH
Confidence 8887765421 122 223332 2334444333322 1244676667777777663
No 416
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.98 E-value=0.1 Score=43.81 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=76.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|++++.. +.++.+..+++|+||.++..+.......-..|..
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gav 226 (284)
T PRK14177 161 NAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKADWISEGAV 226 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCE
Confidence 6889987 678999999999999999998743 2367788899999999998887766656667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI 142 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~ 142 (257)
++|..+... ..||-+ ++.+.+..+.+.. .-|.+|.-...-+..|++
T Consensus 227 VIDvGin~~------------~~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~ 272 (284)
T PRK14177 227 LLDAGYNPG------------NVGDIE-ISKAKDKSSFYTP---VPGGVGPMTIAVLLLQTL 272 (284)
T ss_pred EEEecCccc------------ccCCcC-HHHHhhhccEecC---CCCCChHHHHHHHHHHHH
Confidence 888776431 234433 2334443332221 124467666677777765
No 417
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.97 E-value=0.021 Score=47.83 Aligned_cols=116 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-+ ..|.+++..|...|..|+++.++. .++.+.++++|+||.+++.+..+....-..|..
T Consensus 154 ~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~Gav 219 (279)
T PRK14178 154 RAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITPDMVKPGAT 219 (279)
T ss_pred EEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCHHHcCCCcE
Confidence 68899998 999999999999999999987642 367788899999999998665544444467888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
++|..+... .+. ..||-+ ++.+++.-..+.. .-|.+|.-...-+..|++.+
T Consensus 220 VIDVgi~~~-----~gk----l~GDvd-f~~~~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a 270 (279)
T PRK14178 220 VIDVGINQV-----NGK----LCGDVD-FDAVKEIAGAITP---VPGGVGPMTIATLMENTFDA 270 (279)
T ss_pred EEEeecccc-----CCC----CcCCcc-HHHHHhhccCcCC---CCCCCHHHHHHHHHHHHHHH
Confidence 888776531 122 223322 3344444332222 12335666666677776643
No 418
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.97 E-value=0.0097 Score=52.55 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
++|.|||+|..|.++|..|.+.|++|++++|+++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 4799999999999999999999999999998754
No 419
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.11 Score=43.94 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=79.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|++++... .++.+.+++||+||.++..+.......-..|..
T Consensus 162 ~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gai 227 (294)
T PRK14187 162 DAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVKYSWIKKGAI 227 (294)
T ss_pred EEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence 6889987 6789999999999999999987531 357788899999999999887766655567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
++|..+..-... +. .- ..||-+ ++.+.+..+.+.+ .-|.+|.-....+..|++.+
T Consensus 228 VIDVGin~~~~~---~~-~k-l~GDvd-~e~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a 282 (294)
T PRK14187 228 VIDVGINSIEEG---GV-KK-FVGDVD-FAEVKKKASAITP---VPGGVGPMTIAFLMVNTVIA 282 (294)
T ss_pred EEEecccccCCC---Cc-cc-eeCCcc-HHHHhhhccEecC---CCCCChHHHHHHHHHHHHHH
Confidence 888776532111 10 01 234433 3344443332222 12446777777777787643
No 420
>PRK07588 hypothetical protein; Provisional
Probab=95.96 E-value=0.01 Score=52.38 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=31.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|+|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 7899999999999999999999999999987654
No 421
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.96 E-value=0.016 Score=48.20 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=35.3
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
+-|-|+ +.+|..+|+.|+++|++|+++.|+.++++++++
T Consensus 9 ~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 9 ALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 455576 999999999999999999999999999998876
No 422
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.95 E-value=0.01 Score=52.89 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~ 34 (257)
|||.|||.|.-|.++|..|.++|+ +|++++|.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 799999999999999999999985 9999998765
No 423
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.94 E-value=0.0084 Score=53.08 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=32.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~ 36 (257)
|||.|+|. |.+|..+++.|.++|++|++++|++++.
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence 57899976 9999999999999999999999987643
No 424
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.93 E-value=0.032 Score=44.08 Aligned_cols=86 Identities=8% Similarity=0.164 Sum_probs=58.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH----HHHHHCCC---cccCCHHHHhhcCceEEEccCChHH-HHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGA---TVGGSPAEVIKKCTITIGMLADPAA-ALS 72 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~----~~l~~~g~---~~~~~~~~~~~~~dvii~~v~~~~~-~~~ 72 (257)
++.|||- ..+|.+++..|.++|..|+++|.+.-.. .++....- ....++.+.+++||+||.+++.+.. +..
T Consensus 64 ~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~ 143 (197)
T cd01079 64 TITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPT 143 (197)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCH
Confidence 6889987 5689999999999999999998653221 00000000 0011267888999999999998876 554
Q ss_pred HHHhcCCcEEecccc
Q 025163 73 AITSKGGHFLEAPVS 87 (257)
Q Consensus 73 ~~~~~g~~~~~~pv~ 87 (257)
..-..|..++|..+.
T Consensus 144 d~ik~GavVIDVGi~ 158 (197)
T cd01079 144 ELLKDGAICINFASI 158 (197)
T ss_pred HHcCCCcEEEEcCCC
Confidence 455567777776644
No 425
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=95.92 E-value=0.098 Score=42.74 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=45.0
Q ss_pred EEEEcCCchhHHHHHHC-CCcccCCHHHHh-hcCceEEEccCChHHHHH--HHHhcCCcE
Q 025163 26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALS--AITSKGGHF 81 (257)
Q Consensus 26 V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~--~~~~~g~~~ 81 (257)
+.+||+++++.+.+.+. |+...+++++++ .+.|+|++|+|+....+. .....|.++
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhV 64 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDL 64 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCE
Confidence 56789999999888764 778888999986 579999999999988776 444566654
No 426
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.11 Score=43.58 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=76.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|+++.... .++.+.++++|+||.++..+.......-..|..
T Consensus 158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~Gav 223 (282)
T PRK14169 158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIGADAVKPGAV 223 (282)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcCCCcE
Confidence 6889986 5689999999999999999885421 257788899999999999887766656667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+..-. .+. ++ ||-+ ++.+.+.-..+.+ .-|.+|.-...-+..|++.
T Consensus 224 VIDvGin~~~----~gk---l~-GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 274 (282)
T PRK14169 224 VIDVGISRGA----DGK---LL-GDVD-EAAVAPIASAITP---VPGGVGPMTIASLMAQTVT 274 (282)
T ss_pred EEEeeccccC----CCC---ee-ecCc-HHHHHhhccEecC---CCCCcHHHHHHHHHHHHHH
Confidence 8887765321 122 22 3322 2333333332222 1234566666677777653
No 427
>PRK12320 hypothetical protein; Provisional
Probab=95.85 E-value=0.014 Score=55.09 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=46.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----c-CCHHHHhhcCceEEEccCC
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----G-GSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~-~~~~~~~~~~dvii~~v~~ 66 (257)
|||.|.| +|.+|+.++..|.+.||+|++++|++.... ..++.. . ....+++.++|+||-+.+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~ 70 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAPV 70 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCcc
Confidence 8999998 699999999999999999999998754321 112211 1 1234556789999998864
No 428
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.021 Score=49.29 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=44.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcccC----CHHHHhhcCceEE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGG----SPAEVIKKCTITI 61 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~----~~~~~~~~~dvii 61 (257)
|+|||||.|..|.-|+..-.+-|++|.+.|.+++.-. +..+.-+.... .+.++++.||+|=
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT 67 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVIT 67 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEE
Confidence 4699999999999999999999999999998776533 23333222222 3556778888774
No 429
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.84 E-value=0.14 Score=43.45 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=78.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|++++.. +.++.+.++++|+||.++..+.......-..|..
T Consensus 169 ~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gav 234 (299)
T PLN02516 169 KAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKGDWIKPGAA 234 (299)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence 6889987 568999999999999999999653 2367788999999999998876655555567888
Q ss_pred EEeccccCCccccc-cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAE-TGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
++|..+..-..... .+. - ..||-+ ++.+.+..+.+.. .-|.+|.-....+..|++.+
T Consensus 235 VIDvGin~~~~~~~~~g~--k-l~GDvd-~e~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~a 292 (299)
T PLN02516 235 VIDVGTNAVSDPSKKSGY--R-LVGDVD-FAEVSKVAGWITP---VPGGVGPMTVAMLLKNTVDG 292 (299)
T ss_pred EEEeeccccCcccccCCC--c-eEcCcC-hHHhhhhceEecC---CCCCchHHHHHHHHHHHHHH
Confidence 88877654221111 121 1 234432 2334433332221 23446777777777777643
No 430
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.021 Score=50.62 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=47.9
Q ss_pred CeEEEEcCChhHHHHH-HHHHHC-----CCeEEEEcCCchhHHHH-------HH-CC----CcccCCHHHHhhcCceEEE
Q 025163 1 MEVGFLGLGIMGKAIS-MNLLRN-----GFKVTVWNRTLSKCDEL-------VA-HG----ATVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 1 mkI~iIG~G~mG~~la-~~L~~~-----g~~V~~~~r~~~~~~~l-------~~-~g----~~~~~~~~~~~~~~dvii~ 62 (257)
+||+|||.|+...+.- ..+..+ +.++.++|.++++.+.. .+ .| +..++|.+++++++|+|+.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~ 83 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVIT 83 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEEE
Confidence 4799999999887632 222222 45899999998887632 21 23 3457899999999999999
Q ss_pred ccCC
Q 025163 63 MLAD 66 (257)
Q Consensus 63 ~v~~ 66 (257)
+.-.
T Consensus 84 ~~rv 87 (442)
T COG1486 84 QIRV 87 (442)
T ss_pred EEee
Confidence 9743
No 431
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.83 E-value=0.038 Score=47.30 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=55.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEc--CCchhH-HHHHHCCCcccCC--HHHHhhcCceEEEccCChHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWN--RTLSKC-DELVAHGATVGGS--PAEVIKKCTITIGMLADPAAAL 71 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~--r~~~~~-~~l~~~g~~~~~~--~~~~~~~~dvii~~v~~~~~~~ 71 (257)
+||+|+|+ |.+|..|.+.|.+..+. +.++. |+..+- -++......+..+ .....+++|++|.|.+.....+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 58999976 99999999999997542 44443 333322 3333332333322 1123468999999999776654
Q ss_pred H--HHHhcCCcEEecc
Q 025163 72 S--AITSKGGHFLEAP 85 (257)
Q Consensus 72 ~--~~~~~g~~~~~~p 85 (257)
. .+...|+.++|+.
T Consensus 82 ~~p~~~~~G~~VIdns 97 (334)
T COG0136 82 VEPKAAEAGCVVIDNS 97 (334)
T ss_pred HHHHHHHcCCEEEeCC
Confidence 4 7778888888843
No 432
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.82 E-value=0.026 Score=47.74 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~ 32 (257)
||.|||+|..|..++++|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999995 57777643
No 433
>PRK08309 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.027 Score=44.14 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=35.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
|++.|+|...+|..++..|.+.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 88999998778889999999999999999999887766543
No 434
>PRK07236 hypothetical protein; Provisional
Probab=95.78 E-value=0.014 Score=51.54 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
++|.|||+|..|..+|..|.++|++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4799999999999999999999999999998754
No 435
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.75 E-value=0.015 Score=48.84 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=45.0
Q ss_pred EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhcCceEEEccC
Q 025163 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvii~~v~ 65 (257)
|.|.| +|.+|+.+++.|.+.|++|++.+|+++....+...+... ..+..+.+.++|+||-|..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 35666 599999999999999999999999887654332222111 1234456678999998874
No 436
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.74 E-value=0.03 Score=48.91 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=50.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHH-HCCCe---EEEEcCCch--hHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNRTLS--KCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL 71 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~-~~g~~---V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~ 71 (257)
|+|+|||+ |.+|..|.+.++ ...++ +..+....+ +...+......+. .++. ..+++|++|+|+|.....+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCCHHHHHH
Confidence 58999998 999999998554 45565 666644311 1212222112222 2333 3478999999999886655
Q ss_pred H--HHHhcCC--cEEe
Q 025163 72 S--AITSKGG--HFLE 83 (257)
Q Consensus 72 ~--~~~~~g~--~~~~ 83 (257)
. .+...|. .++|
T Consensus 81 ~~~~~~~aG~~~~VID 96 (369)
T PRK06598 81 VYPKLRAAGWQGYWID 96 (369)
T ss_pred HHHHHHhCCCCeEEEE
Confidence 4 4556674 3777
No 437
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.74 E-value=0.033 Score=47.40 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=51.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD 66 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~ 66 (257)
+|+|||.-.==..+++.|.+.|++|.++.-..+. ....|+...++.+++++++|+|++.+|.
T Consensus 4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 7999999999999999999999999987654321 1234888888888999999999999875
No 438
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.73 E-value=0.033 Score=47.87 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=58.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 72 (257)
++.|.|.|-.|...|.++.-.|.+|.++..+|=+.-+..=.|..+. ..+|++..+|++|.|+-+......
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~ 280 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRK 280 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCH
Confidence 4567799999999999999999999999999887766666687666 578899999999999987665543
No 439
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.73 E-value=0.025 Score=46.78 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=35.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
|++-|.|. |.+|.++++.|+++|++|++.+|++++++++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 78999976 88999999999999999999999988766554
No 440
>PRK05868 hypothetical protein; Validated
Probab=95.71 E-value=0.016 Score=51.01 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=31.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|+|.|||.|..|..+|..|.++|++|+++++.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4699999999999999999999999999998765
No 441
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.042 Score=46.59 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
+|-|.|+ |.+|..++..|+++|++|++.+|+.++++.+.+
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4667775 999999999999999999999999887766543
No 442
>PLN02214 cinnamoyl-CoA reductase
Probab=95.67 E-value=0.034 Score=48.23 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=45.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHH-----HHHHC--CCcc-------cCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-----ELVAH--GATV-------GGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----~l~~~--g~~~-------~~~~~~~~~~~dvii~~v~ 65 (257)
|+|.|.|. |.+|..++..|.++|++|++..|+.++.. .+... .+.. ..+..++++++|+||-+..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 46888987 99999999999999999999999866422 12111 1111 1234556778999988764
No 443
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=95.67 E-value=0.14 Score=47.37 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=63.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEE--cCCchhHH---HH---HHC---CC-------cccCCHHHHhhcCceEEE
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVW--NRTLSKCD---EL---VAH---GA-------TVGGSPAEVIKKCTITIG 62 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~--~r~~~~~~---~l---~~~---g~-------~~~~~~~~~~~~~dvii~ 62 (257)
||+|||+|.+|+.+...|++.|. ++.++ |+-...+. ++ ++. ++ ....+..+.+++.|+|+.
T Consensus 131 kVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~ 210 (637)
T TIGR03693 131 KILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADWVLY 210 (637)
T ss_pred cEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcEEEE
Confidence 79999999999999999999996 45444 55433222 22 111 21 123356677899999997
Q ss_pred ccCChHHHHH-----HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHH
Q 025163 63 MLADPAAALS-----AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAIS 114 (257)
Q Consensus 63 ~v~~~~~~~~-----~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 114 (257)
.+.++...+. .....|..++-+-..|. ....| +++..+...+++.+..
T Consensus 211 vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~--~~liG--PlftPgkTGCWeCa~~ 263 (637)
T TIGR03693 211 VSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ--VGLAG--PVFQQHGDECFEAAWH 263 (637)
T ss_pred ECCCCChHHHHHHHHHHHHcCCCeEEEEEccc--ceeec--ceECCCCCcHHHHHHH
Confidence 7776654433 44455644443222211 11122 2333455566666543
No 444
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=95.62 E-value=0.027 Score=46.38 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred EEEEcCChhHHHHHHHHHHCC---CeEEEEcCCchhHHHHHHC------C----CcccCCHHHHhhcCceEEEccCChH
Q 025163 3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH------G----ATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 3 I~iIG~G~mG~~la~~L~~~g---~~V~~~~r~~~~~~~l~~~------g----~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
..++|.|..+........+.- .+|.+|+|+++..+++++. . +....+.++++..+|+|+.|+++..
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlste 219 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLSTE 219 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccCC
Confidence 578999999998888777643 4799999999998888762 1 3456688899999999999998653
No 445
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.62 E-value=0.07 Score=45.17 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=57.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHH-------HHh-----hcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA-------EVI-----KKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~-------~~~-----~~~dvii~~v~~~~ 68 (257)
.++|+|+|.+|.+.+..-..+|. +++.+|.|++|.+..++.|++-.-++. |.+ .+.|+-|-|+-..+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~ 274 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVS 274 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHH
Confidence 58999999999999999999986 699999999999999999875443433 322 25788888888887
Q ss_pred HHHH
Q 025163 69 AALS 72 (257)
Q Consensus 69 ~~~~ 72 (257)
...+
T Consensus 275 ~m~~ 278 (375)
T KOG0022|consen 275 TMRA 278 (375)
T ss_pred HHHH
Confidence 7766
No 446
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=95.60 E-value=0.09 Score=46.96 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=56.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC------eEEEEcCCchh-------------------H----HHHHHCC--Ccc----
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLSK-------------------C----DELVAHG--ATV---- 46 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~------~V~~~~r~~~~-------------------~----~~l~~~g--~~~---- 46 (257)
||.|||+|.+|..++++|+..|. +++++|.+.=. . +.+++.+ +++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 68999999999999999999997 79999865321 1 1111111 111
Q ss_pred ---cCC-H----HHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163 47 ---GGS-P----AEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS 89 (257)
Q Consensus 47 ---~~~-~----~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~ 89 (257)
... . .+..++.|+|+.|+-+...... .....++.++++...|.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~ 134 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT 134 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 100 0 2445789999999877655433 55556777777665443
No 447
>PLN02650 dihydroflavonol-4-reductase
Probab=95.59 E-value=0.045 Score=47.52 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=45.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH----CC----C-------cccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HG----A-------TVGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~----~g----~-------~~~~~~~~~~~~~dvii~~v 64 (257)
++|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+.. .+ + .-..+..++++++|.||-+.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 46888875 999999999999999999999888765543322 11 1 11123456677889888765
No 448
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.25 Score=41.61 Aligned_cols=121 Identities=20% Similarity=0.306 Sum_probs=78.4
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~ 76 (257)
++.|||- ..+|.+++..|.++ +..|++++.. +.++.+.++++|+||.++..+.......-.
T Consensus 155 ~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 155 HVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred EEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 6889987 56899999999988 6789988642 126778889999999999888776665667
Q ss_pred cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
.|...+|..+..-......+. -+ .||-+ ++.+.+.-+.+.. .-|.+|.-...-+..|++.
T Consensus 221 ~GavVIDvGin~~~~~~~~g~--kl-~GDVd-~e~~~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 280 (287)
T PRK14181 221 EKAVIVDVGTSRVPAANPKGY--IL-VGDVD-FNNVVPKCRAITP---VPGGVGPMTVAMLMRNTWE 280 (287)
T ss_pred CCCEEEEecccccccccCCCC--ee-Eeccc-hHHHHhhcccccC---CCCchHHHHHHHHHHHHHH
Confidence 788888877654211111121 12 33332 3344444443332 2344666666777777663
No 449
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.58 E-value=0.014 Score=51.61 Aligned_cols=32 Identities=34% Similarity=0.664 Sum_probs=30.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~ 32 (257)
++|.|||+|..|..+|..|.+.|++|+++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 46999999999999999999999999999997
No 450
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.58 E-value=0.02 Score=49.22 Aligned_cols=31 Identities=35% Similarity=0.588 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~ 32 (257)
+|.|||.|..|..+|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999987
No 451
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.57 E-value=0.03 Score=47.01 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=39.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcC--ceEEEccC
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--TITIGMLA 65 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~--dvii~~v~ 65 (257)
||.|+|. |.+|..+++.|.+.|++|++++|+.. .+.-..+..+++++. |+||-|..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 6889985 99999999999999999999988521 111112333444444 88887764
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.56 E-value=0.031 Score=47.36 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=50.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccC
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~ 65 (257)
++|+|||.-.==..+++.|.+.|++|.++.-.... +.+ .|+....+.+++++++|+||+++|
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~ 63 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVP 63 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCc
Confidence 58999999999999999999999999999753210 111 266777778888899999999999
No 453
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.55 E-value=0.057 Score=48.85 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=30.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~ 33 (257)
++|.|||.|..|...|..|.+.|++|+++++++
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 479999999999999999999999999998764
No 454
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.54 E-value=0.016 Score=48.95 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=37.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccC
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA 65 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~ 65 (257)
|||.|+| .|.+|..+.+.|.+.|++|..++|+.-. +.-.....+.++ ..|+||-|..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccce
Confidence 9999999 5999999999999999999999886111 111112223332 4799998863
No 455
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.033 Score=45.22 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=33.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
+|.|+|+ |.+|..+++.|+++|++|++.+|++++.+++.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 4778875 99999999999999999999999988766554
No 456
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.52 E-value=0.058 Score=45.40 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=77.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|+++... +.++.+.++++|+||.++..+.......-..|..
T Consensus 157 ~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~Gav 222 (287)
T PRK14173 157 EVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAV 222 (287)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 6889987 678999999999999999988653 1257788899999999998887666555577888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+..-.. ..+. ....||-+ +.+.+.-..+.+ .-|.+|.-...-+..|++.
T Consensus 223 VIDVGin~~~~--~~gk--~~l~GDVd--~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 276 (287)
T PRK14173 223 VVDVGINRVGG--NGGR--DILTGDVH--PEVAEVAGALTP---VPGGVGPMTVAMLMANTVI 276 (287)
T ss_pred EEEccCccccC--CCCc--eeeecccc--HhHHhhCcEEec---CCCChhHHHHHHHHHHHHH
Confidence 99977654211 1222 11233333 123333222221 1234666677777777663
No 457
>PLN00016 RNA-binding protein; Provisional
Probab=95.51 E-value=0.03 Score=49.25 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=46.0
Q ss_pred CeEEEE----c-CChhHHHHHHHHHHCCCeEEEEcCCchhHH-----------HHHHCCCcc-cCCHHH---Hh--hcCc
Q 025163 1 MEVGFL----G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHGATV-GGSPAE---VI--KKCT 58 (257)
Q Consensus 1 mkI~iI----G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----------~l~~~g~~~-~~~~~~---~~--~~~d 58 (257)
|||.|+ | .|.+|..+++.|.+.||+|++++|+++... .+...|++. ..|+.+ ++ .++|
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~d 132 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGFD 132 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCcc
Confidence 479999 6 599999999999999999999999876432 222334432 224433 33 3689
Q ss_pred eEEEccC
Q 025163 59 ITIGMLA 65 (257)
Q Consensus 59 vii~~v~ 65 (257)
+||-+..
T Consensus 133 ~Vi~~~~ 139 (378)
T PLN00016 133 VVYDNNG 139 (378)
T ss_pred EEEeCCC
Confidence 9988754
No 458
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.51 E-value=0.06 Score=46.08 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=44.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHH---HHH-CC----Cc-------ccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVA-HG----AT-------VGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~---l~~-~g----~~-------~~~~~~~~~~~~dvii~~v 64 (257)
++|.|.| .|.+|..++..|.++|++|++..|+.++.+. +.. .+ +. -..+..++++++|+||-+.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 85 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTA 85 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeC
Confidence 3688887 5999999999999999999988887664332 221 11 11 1123456677899988775
No 459
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.50 E-value=0.051 Score=46.57 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=45.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH---H-CC----Cc-------ccCCHHHHhhcCceEEEcc
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV---A-HG----AT-------VGGSPAEVIKKCTITIGML 64 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~---~-~g----~~-------~~~~~~~~~~~~dvii~~v 64 (257)
|+|.|.|. |.+|..++..|++.|++|++.+|++++.+... . .+ +. -..+..+++++.|+||-+.
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeC
Confidence 46778874 99999999999999999998888876543321 1 11 11 1123445667889988876
Q ss_pred C
Q 025163 65 A 65 (257)
Q Consensus 65 ~ 65 (257)
.
T Consensus 86 ~ 86 (325)
T PLN02989 86 S 86 (325)
T ss_pred C
Confidence 4
No 460
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.50 E-value=0.16 Score=46.01 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCC
Q 025163 130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPA 196 (257)
Q Consensus 130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~ 196 (257)
+.++.+|.++|.+.+..+.+++|.+.+.++ +++|...+.++++.+.. .+++++... +.+.+--+++.
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~ 395 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD 395 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence 678999999999999999999999999884 27999999999998864 344443211 11111111222
Q ss_pred c--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163 197 F--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 234 (257)
Q Consensus 197 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 234 (257)
| .+......++.++..+-+.|+|+|.+.+...-+....
T Consensus 396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~ 435 (470)
T PTZ00142 396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYR 435 (470)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 2 1233455668899999999999999999888555443
No 461
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.49 E-value=0.019 Score=51.07 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
++|.|||+|..|.++|..|.++|++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3699999999999999999999999999988654
No 462
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.49 E-value=0.033 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=30.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
|||.|.|+ |.+|..++..|.++|++|+++||...
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899985 99999999999999999999998543
No 463
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.47 E-value=0.036 Score=45.35 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=34.0
Q ss_pred EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (257)
Q Consensus 3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~ 42 (257)
+-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+.
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 44555 69999999999999999999999998887777653
No 464
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.47 E-value=0.036 Score=45.35 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=34.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
+|.|+|+ |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5788875 99999999999999999999999988766554
No 465
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.053 Score=45.24 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
+|-|.|+ |.+|..+++.|+++|++|++++|++++.+.+.
T Consensus 9 ~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 9 TYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 5778886 89999999999999999999999987765543
No 466
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.22 Score=41.85 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=76.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.+++..|++++.. +.++.+..++||+||.++..+.......-..|..
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gai 224 (282)
T PRK14182 159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKGAWVKEGAV 224 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 6889976 668999999999999999998653 2356788899999999998776665555567888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+.... .+. ..||-+ ++.+++....+.. .-|.+|.-...-+..|++.
T Consensus 225 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 275 (282)
T PRK14182 225 VIDVGMNRLA----DGK----LVGDVE-FAAAAARASAITP---VPGGVGPMTRAMLLVNTVE 275 (282)
T ss_pred EEEeeceecC----CCC----eeCCCC-HHHHHhhccEecC---CCCCChHHHHHHHHHHHHH
Confidence 8887765321 122 233332 3334444333322 1244666666777777653
No 467
>PRK06847 hypothetical protein; Provisional
Probab=95.42 E-value=0.022 Score=49.89 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
+|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 699999999999999999999999999998754
No 468
>PLN02686 cinnamoyl-CoA reductase
Probab=95.42 E-value=0.045 Score=48.05 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (257)
Q Consensus 1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l 39 (257)
++|.|.|. |.+|..+++.|+++|++|+++.|+.+..+.+
T Consensus 54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778875 9999999999999999999888887665544
No 469
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.068 Score=44.78 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=78.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|++++.. +.++.+.++++|+||.++..+.......-..|..
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gav 225 (278)
T PRK14172 160 EVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAI 225 (278)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcE
Confidence 6889986 678999999999999999999753 2367788899999999999887766555667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI 142 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~ 142 (257)
.+|..+... .+. +.||-+ ++.+.+..+.+.. .-|.+|.-...-+..|++
T Consensus 226 VIDvGin~~-----~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~ 274 (278)
T PRK14172 226 VIDVGTSSV-----NGK----ITGDVN-FDKVIDKASYITP---VPGGVGSLTTTLLIKNVC 274 (278)
T ss_pred EEEeecccc-----CCc----eeeecc-HHHHHhhccEecC---CCCCccHHHHHHHHHHHH
Confidence 888766532 122 234433 3445554433332 234467666677777765
No 470
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.40 E-value=0.057 Score=45.70 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=46.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCc-------ccC
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GAT-------VGG 48 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~-------~~~ 48 (257)
||.|||+|.+|..++++|+..|. +++++|-+.= |++. +.+. +++ ...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 68999999999999999999996 5888875421 1111 1111 111 122
Q ss_pred CHHHHhhcCceEEEccCChHHH
Q 025163 49 SPAEVIKKCTITIGMLADPAAA 70 (257)
Q Consensus 49 ~~~~~~~~~dvii~~v~~~~~~ 70 (257)
...+..++.|+||.|+-+....
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR 102 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEAR 102 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHH
Confidence 2346678999999998876553
No 471
>PRK14851 hypothetical protein; Provisional
Probab=95.39 E-value=0.076 Score=50.28 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=56.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCc-------c-c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GAT-------V-G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~-------~-~ 47 (257)
||+|+|+|.+|+.++..|++.|. +++++|-+.= |++.+++ . .+. + .
T Consensus 45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~ 124 (679)
T PRK14851 45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA 124 (679)
T ss_pred eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence 79999999999999999999996 5777764321 2221211 1 111 1 1
Q ss_pred CCHHHHhhcCceEEEccCChH-HHH----HHHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPA-AAL----SAITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~-~~~----~~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||-|+.+.. ... ......++.++.+.+.+
T Consensus 125 ~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 125 DNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred HHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 244567889999998886532 111 14556788888766443
No 472
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.38 E-value=0.023 Score=52.39 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=28.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
.||+|||+|.-|.+.++.|.+.|+++++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 3799999999999999999999999999998765
No 473
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.36 E-value=0.2 Score=42.38 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=58.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~ 75 (257)
||.|.|. |..|..+-.+|...|++ .++..|+.+- +.+ .|.+...|+.|+-+. .|+.++++|.....+. .+.
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~ 84 (286)
T TIGR01019 8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAI 84 (286)
T ss_pred cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHH
Confidence 6889997 99999999999999999 6667776631 111 378888899998876 7999999998876665 444
Q ss_pred hcCCc
Q 025163 76 SKGGH 80 (257)
Q Consensus 76 ~~g~~ 80 (257)
.+|+.
T Consensus 85 ~~Gvk 89 (286)
T TIGR01019 85 DAGIE 89 (286)
T ss_pred HCCCC
Confidence 45544
No 474
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.36 E-value=0.42 Score=40.74 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=47.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcccCCHHH-HhhcCceEEEccCChHHHHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPAAALS 72 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~~~~dvii~~v~~~~~~~~ 72 (257)
++.|+|+|.+|...++.+...|.+ |.++++++++++...+..+ . +..+ .-...|++|-|+........
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i-~~~~~~~~g~Dvvid~~G~~~~~~~ 216 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--L-DPEKDPRRDYRAIYDASGDPSLIDT 216 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--c-ChhhccCCCCCEEEECCCCHHHHHH
Confidence 578999999999999888888976 6667888777665443321 1 2222 22468999999997654443
No 475
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.36 E-value=0.018 Score=51.63 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=31.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
++++|||+|..|.+.|+.|.+.|++|+++.|+.+
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 3699999999999999999999999999998765
No 476
>PRK07877 hypothetical protein; Provisional
Probab=95.35 E-value=0.069 Score=50.79 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=57.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCc---h---------------hHHHHHH----C--CCcc--------c
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTL---S---------------KCDELVA----H--GATV--------G 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~---~---------------~~~~l~~----~--g~~~--------~ 47 (257)
||+|+|+| +|+..+..|++.|. +++++|.+. + |++.+++ . .+++ .
T Consensus 109 ~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~ 187 (722)
T PRK07877 109 RIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTE 187 (722)
T ss_pred CEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence 79999999 99999999999993 788887642 1 1111111 1 1111 2
Q ss_pred CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||-|+-+-..... .....++.++.+...+
T Consensus 188 ~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~ 231 (722)
T PRK07877 188 DNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR 231 (722)
T ss_pred HHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2566778899999999987644332 4556788888766443
No 477
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.043 Score=44.77 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
++.|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 11 SVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5778887 899999999999999999999999887776654
No 478
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.074 Score=44.73 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=76.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHH--CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcC
Q 025163 2 EVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKG 78 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g 78 (257)
++.|||- ..+|.+++..|.+ ++..|+++... +.++.+.++++|+||.++..+.......-..|
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~G 225 (284)
T PRK14193 160 HVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTADMVKPG 225 (284)
T ss_pred EEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCHHHcCCC
Confidence 6889986 6789999999998 67889988653 23678889999999999988876665556678
Q ss_pred CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 79 GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 79 ~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
..++|..+.... .+. ..||-+ +.+.+.-+.+.+ .-|.+|.-...-+..|++.
T Consensus 226 avVIDvGin~~~----~gk----l~GDvd--~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~ 277 (284)
T PRK14193 226 AAVLDVGVSRAG----DGK----LVGDVH--PDVWEVAGAVSP---NPGGVGPMTRAFLLTNVVE 277 (284)
T ss_pred CEEEEccccccC----CCc----EEeecC--HhHHhhCCEEeC---CCCChhHHHHHHHHHHHHH
Confidence 888887765321 122 223333 233333322221 1234666666677777653
No 479
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.33 E-value=0.19 Score=42.00 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=78.7
Q ss_pred eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||-++ +|.+|+..|..+++.|++++... .++.+..+++|+++.++--+.......-..|..
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gav 223 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIKADMVKPGAV 223 (283)
T ss_pred EEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccccccccCCCE
Confidence 688999865 79999999999999999997632 367788899999999998877766545556777
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
.+|.++..-.. +. ..||-+ ++.+++.-+.+.. .-|.+|.-..+-+..|++.+
T Consensus 224 VIDVGinrv~~----~k----l~GDVd-f~~v~~~a~~iTP---VPGGVGPmTvamLl~Nt~~a 275 (283)
T COG0190 224 VIDVGINRVND----GK----LVGDVD-FDSVKEKASAITP---VPGGVGPMTVAMLLENTLKA 275 (283)
T ss_pred EEecCCccccC----Cc----eEeecc-HHHHHHhhcccCC---CCCccCHHHHHHHHHHHHHH
Confidence 88877654332 21 123322 2334443333322 23456777777777787654
No 480
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.2 Score=42.48 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=78.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~ 76 (257)
++.|||- ..+|.+++..|.++ +..|+++... +.++.+.++++|+||.++.-+.......-.
T Consensus 163 ~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 163 EVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred EEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCHHHcC
Confidence 6889976 67899999999987 6789988643 136778889999999999877766655666
Q ss_pred cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~ 144 (257)
.|..++|..+..-......+. ....||-+ ++.+++.-..+.+ .-|.+|.-...-+..|++.+
T Consensus 229 ~gavVIDvGin~~~~~~~~g~--~~~~GDVd-fe~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a 290 (297)
T PRK14168 229 PGATVIDVGVNRVGTNESTGK--AILSGDVD-FDAVKEIAGKITP---VPGGVGPMTIAMLMRNTLKS 290 (297)
T ss_pred CCCEEEecCCCccCccccCCC--cceecccc-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHHH
Confidence 788888877654211111122 11234433 3444444333322 12446777777777777643
No 481
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=95.31 E-value=0.03 Score=47.14 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=34.7
Q ss_pred EEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163 3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (257)
Q Consensus 3 I~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~ 42 (257)
.++| +.+.+|.++|.-|+++|++|.+..|+++|+++.+++
T Consensus 51 WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 51 WAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred EEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 3455 458999999999999999999999999999988763
No 482
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.30 E-value=0.18 Score=42.76 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=56.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT 75 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~ 75 (257)
||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+++ .|++...++.|+-.. .|+.+++||.....+. ...
T Consensus 10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~ 86 (291)
T PRK05678 10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAI 86 (291)
T ss_pred eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHH
Confidence 6889998 88999999999999987 554444431 1111 378888899998876 8999999998876665 444
Q ss_pred hcCCc
Q 025163 76 SKGGH 80 (257)
Q Consensus 76 ~~g~~ 80 (257)
.+|+.
T Consensus 87 ~~gvk 91 (291)
T PRK05678 87 DAGID 91 (291)
T ss_pred HCCCC
Confidence 45544
No 483
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.045 Score=44.76 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (257)
Q Consensus 2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~ 40 (257)
+|.|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 577776 599999999999999999999999988766543
No 484
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.28 E-value=0.025 Score=51.20 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
++|+|||+|.-|.+.|..|.+.|++|+++.++.+
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3799999999999999999999999999998754
No 485
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.24 E-value=0.072 Score=46.78 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=47.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch------------------hHHHHHHC-CCcccCCHHHHhhcCceEE
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS------------------KCDELVAH-GATVGGSPAEVIKKCTITI 61 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~------------------~~~~l~~~-g~~~~~~~~~~~~~~dvii 61 (257)
.+|+|-|.|++|..+|+.|.+.|.+|+.++-+.. +..++.+. |.+..+..+-...+||+++
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 4799999999999999999999999988866555 22233222 4444444322335799888
Q ss_pred EccCChHH
Q 025163 62 GMLADPAA 69 (257)
Q Consensus 62 ~~v~~~~~ 69 (257)
-|--....
T Consensus 288 PcA~~n~I 295 (411)
T COG0334 288 PCALENVI 295 (411)
T ss_pred cccccccc
Confidence 77654433
No 486
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.24 E-value=0.87 Score=38.15 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=50.1
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEE--cCCc--hhHHHHHHCCCcc------cCCHHHHhhc-Cc-eEEEccCChH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTL--SKCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~--~r~~--~~~~~l~~~g~~~------~~~~~~~~~~-~d-vii~~v~~~~ 68 (257)
||.|.|+ |.||...++...+.++++... +... +....+...++.+ ..++.++.+. +| ++|=.+ .+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 7889998 999999999998888887764 4321 1222333335555 6678887766 88 555444 333
Q ss_pred HHHH---HHHhcCCcEE
Q 025163 69 AALS---AITSKGGHFL 82 (257)
Q Consensus 69 ~~~~---~~~~~g~~~~ 82 (257)
.+.. .....|+.++
T Consensus 81 ~~~~n~~~~~~~gv~~V 97 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPFV 97 (275)
T ss_pred HHHHHHHHHHHCCCCEE
Confidence 4333 4445565543
No 487
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.24 E-value=1.5 Score=36.44 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEE-EEc
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWN 30 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~ 30 (257)
.+|.|.|.|++|...++.|.+.|..|+ +.|
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 379999999999999999999999987 445
No 488
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.21 E-value=0.088 Score=50.75 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=47.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch----------------h-----HHHHHHCCCcccC--------CHH
Q 025163 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS----------------K-----CDELVAHGATVGG--------SPA 51 (257)
Q Consensus 1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~----------------~-----~~~l~~~g~~~~~--------~~~ 51 (257)
+||.|||.|.-|...|..|++.|++|+++++.+. . .+.+.+.|+.... +++
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~ 511 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIE 511 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHH
Confidence 4799999999999999999999999999987431 1 2334445654321 344
Q ss_pred HHhh-cCceEEEccCC
Q 025163 52 EVIK-KCTITIGMLAD 66 (257)
Q Consensus 52 ~~~~-~~dvii~~v~~ 66 (257)
+..+ ..|.||+++-.
T Consensus 512 ~l~~~~ydavvlAtGa 527 (752)
T PRK12778 512 ELEEEGFKGIFIASGA 527 (752)
T ss_pred HHhhcCCCEEEEeCCC
Confidence 4433 48999999865
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.21 E-value=0.23 Score=42.61 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHH----------HHhh-cCceEEEccCChHH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA----------EVIK-KCTITIGMLADPAA 69 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~----------~~~~-~~dvii~~v~~~~~ 69 (257)
.++|+|+|.+|.+-.+....+|. .|+..|.+++|++..++.|++-.-++. ++.. .+|..|-|+-....
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~ 267 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEV 267 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHH
Confidence 57999999999999999999986 588899999999999998875433332 2223 68999999999887
Q ss_pred HHH
Q 025163 70 ALS 72 (257)
Q Consensus 70 ~~~ 72 (257)
.+.
T Consensus 268 ~~~ 270 (366)
T COG1062 268 MRQ 270 (366)
T ss_pred HHH
Confidence 776
No 490
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.079 Score=44.51 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=77.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH 80 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~ 80 (257)
++.|||- ..+|.+++..|.++|..|++++... .++.+..+++|+||.++..+.......-..|..
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gav 225 (282)
T PRK14180 160 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITADMVKEGAV 225 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcE
Confidence 6889986 6789999999999999999986531 266677899999999999887766555667888
Q ss_pred EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163 81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143 (257)
Q Consensus 81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~ 143 (257)
++|..+... .+. ..||-+ ++.+.+..+.+.. .-|.+|.-...-+..|++.
T Consensus 226 VIDvGin~~-----~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~Nl~~ 275 (282)
T PRK14180 226 VIDVGINHV-----DGK----IVGDVD-FAAVKDKVAAITP---VPGGVGPMTITELLYNTFQ 275 (282)
T ss_pred EEEeccccc-----CCc----eeCCcC-HHHHHhhccEecc---CCCChhHHHHHHHHHHHHH
Confidence 888776531 122 234432 2344443332221 2344666666777777653
No 491
>PRK14852 hypothetical protein; Provisional
Probab=95.20 E-value=0.091 Score=51.25 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=56.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHH----HHCC--Cc--------cc
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDEL----VAHG--AT--------VG 47 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l----~~~g--~~--------~~ 47 (257)
||+|||+|.+|+.++..|+..|. +++++|-+.= |++.+ ++.+ ++ ..
T Consensus 334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~ 413 (989)
T PRK14852 334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAA 413 (989)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCH
Confidence 79999999999999999999985 5777764421 12111 1111 11 12
Q ss_pred CCHHHHhhcCceEEEccCChHH-HHH----HHHhcCCcEEeccccC
Q 025163 48 GSPAEVIKKCTITIGMLADPAA-ALS----AITSKGGHFLEAPVSG 88 (257)
Q Consensus 48 ~~~~~~~~~~dvii~~v~~~~~-~~~----~~~~~g~~~~~~pv~~ 88 (257)
.+..+.++++|+||-|+-.... ... .....++.++.+.+.|
T Consensus 414 en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 414 ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 3566678899999998875322 111 4566788888766544
No 492
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.19 E-value=0.051 Score=44.91 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=70.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-------CCcccCCHHHHhhcCceEEEccCChH
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-------GATVGGSPAEVIKKCTITIGMLADPA 68 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~~dvii~~v~~~~ 68 (257)
||.|+|.|.+|.+.|..+.-+|. ++.+.|.++++++ +|+.. .+....|. .+.++++++|+..-..+
T Consensus 22 KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIiTAGarq 100 (332)
T KOG1495|consen 22 KITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVIITAGARQ 100 (332)
T ss_pred eEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEEecCCCC
Confidence 89999999999999999988874 7999999988654 22211 12222233 23468899998875443
Q ss_pred HH-HH--HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163 69 AA-LS--AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK 122 (257)
Q Consensus 69 ~~-~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 122 (257)
.. +. .+.++++..+-.-+ ............++++.+-+....+..-+..+..+
T Consensus 101 ~~gesRL~lvQrNV~ifK~ii-p~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n 156 (332)
T KOG1495|consen 101 SEGESRLDLVQRNVDIFKAII-PALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN 156 (332)
T ss_pred CCCcHHHHHHHHHHHHHHHHH-HHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc
Confidence 31 11 22333332221110 00111223344577788878777777777777644
No 493
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.32 Score=41.25 Aligned_cols=120 Identities=20% Similarity=0.307 Sum_probs=76.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS 76 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~ 76 (257)
++.|||- ..+|.+++..|.++ +..|+++.... .++.+.++++|+||.++.-+.......-.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 159 DVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred EEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence 6889986 56899999999987 67899885421 36778889999999999877666555566
Q ss_pred cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163 77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI 142 (257)
Q Consensus 77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~ 142 (257)
.|..++|..+..-......|. - ..||-+ ++.+.+..+.+.. .-|.+|.-...-+..|++
T Consensus 225 ~gaiVIDvGin~~~~~~~~g~--k-l~GDVd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~ 283 (297)
T PRK14167 225 EGATVIDVGINRVDADTEKGY--E-LVGDVE-FESAKEKASAITP---VPGGVGPMTRAMLLYNTV 283 (297)
T ss_pred CCCEEEEccccccCcccccCC--c-eeecCc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHH
Confidence 788888877654211111121 1 223333 2444444433332 124466666677777765
No 494
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.17 E-value=0.026 Score=50.01 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=31.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
||.|||+|..|.++|..|.++|++|+++++.++
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999998754
No 495
>PRK08013 oxidoreductase; Provisional
Probab=95.15 E-value=0.028 Score=49.81 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 699999999999999999999999999998754
No 496
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.15 E-value=0.054 Score=44.03 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=33.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l 39 (257)
+|.|.|+ |.+|..+++.|+++|++|++++|++++.+.+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 5888875 9999999999999999999999998776544
No 497
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.074 Score=43.75 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=33.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (257)
Q Consensus 2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~ 41 (257)
+|.|.|+ |.+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRA 44 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5778875 999999999999999999999998877665543
No 498
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.12 E-value=0.028 Score=49.25 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
.|.|||+|..|..+|..|+++|++|++++|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 488999999999999999999999999998864
No 499
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.11 E-value=0.031 Score=49.41 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=31.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (257)
Q Consensus 2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~ 34 (257)
+|.|||+|..|.+.|..|.++|++|+++++.+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 699999999999999999999999999998764
No 500
>PRK06953 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.052 Score=43.79 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=35.5
Q ss_pred Ce-EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163 1 ME-VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (257)
Q Consensus 1 mk-I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g 43 (257)
|| +-|.| .|.+|..+++.|++.|++|++.+|+++..+++...+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~ 45 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALG 45 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhcc
Confidence 54 45555 699999999999999999999999988877776543
Done!