Query 025164
Match_columns 257
No_of_seqs 96 out of 105
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 94.3 0.19 6.4E-06 37.5 7.7 81 99-191 3-85 (152)
2 1c0m_A Protein (integrase); HI 93.1 0.43 1.5E-05 39.8 8.7 87 98-191 10-98 (238)
3 1cxq_A Avian sarcoma virus int 92.9 0.38 1.3E-05 37.1 7.5 87 98-191 11-99 (162)
4 2x78_A Integrase; viral protei 92.5 0.43 1.5E-05 37.7 7.5 87 98-191 13-101 (200)
5 1bco_A MUA domain II, bacterio 86.3 0.68 2.3E-05 40.7 4.5 90 98-191 16-131 (327)
6 3hph_A Integrase, IN; protein- 85.8 3.6 0.00012 33.1 8.2 82 99-192 61-144 (219)
7 3l3u_A POL polyprotein; DNA in 82.2 4.4 0.00015 30.8 6.9 82 98-191 9-92 (163)
8 1c6v_A Protein (SIV integrase) 75.4 4.1 0.00014 30.4 4.8 79 98-191 9-92 (164)
9 3oym_A PFV integrase, P42IN; p 70.5 21 0.00071 31.1 8.7 87 98-191 125-213 (395)
10 3av9_A Integrase, IN; protein- 62.7 42 0.0014 26.2 8.4 82 98-191 29-112 (183)
11 4fcy_A Transposase; rnaseh, DD 59.3 11 0.00037 34.8 5.0 92 98-191 187-302 (529)
12 3f9k_A Integrase; protein-prot 57.8 17 0.00059 29.1 5.4 82 98-191 59-142 (210)
13 1k6y_A Integrase; HIV-1, domai 51.2 46 0.0016 26.3 6.9 81 99-191 59-141 (212)
14 1ex4_A Integrase; SH3-like dom 44.7 83 0.0028 25.7 7.7 82 98-191 9-92 (239)
15 3txv_A Probable tagatose 6-pho 32.1 69 0.0024 31.0 5.9 49 133-187 24-86 (450)
16 4dyq_A Gene 1 protein; GP1, oc 28.1 29 0.00098 27.3 2.1 22 176-202 31-52 (140)
17 1gvf_A Tagatose-bisphosphate a 26.3 1.1E+02 0.0037 27.6 5.8 47 139-188 24-78 (286)
18 2boy_A 3-chlorocatechol 1,2-di 25.2 65 0.0022 28.7 4.1 70 98-168 122-195 (254)
19 3pam_A Transmembrane protein; 23.7 1E+02 0.0035 25.2 4.8 35 161-195 127-166 (259)
20 3elf_A Fructose-bisphosphate a 23.5 1.2E+02 0.0041 28.2 5.7 48 139-189 27-92 (349)
21 3e7l_A Transcriptional regulat 23.4 60 0.002 22.0 2.8 21 176-202 35-55 (63)
22 3pm6_A Putative fructose-bisph 21.4 1.5E+02 0.0052 27.1 5.8 48 139-189 33-87 (306)
23 2isw_A Putative fructose-1,6-b 20.8 1.6E+02 0.0056 27.1 6.0 47 139-188 24-79 (323)
24 2elh_A CG11849-PA, LD40883P; s 20.0 78 0.0027 22.5 3.0 45 176-240 41-85 (87)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=94.29 E-value=0.19 Score=37.50 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=61.2
Q ss_pred ccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HHH
Q 025164 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII 176 (257)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nmI 176 (257)
.+||+||-.- |+ .|=++|.|.-+.+.+...++ ..++..+..+|..++...| |..|+.=|..-+ ..+
T Consensus 3 ~~w~~D~t~~------~~-~y~~~~iD~~sr~~~~~~~~--~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~~~ 70 (152)
T 3kks_A 3 HLWQMDNTHW------NK-TIIWVAVETNSGLVEAQVIP--EETALQVALCILQLIQRYT---VLHLHSDNGPCFTAHRI 70 (152)
T ss_dssp CEEEEEEEEE------TT-EEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSHHH
T ss_pred cEEEEeeeee------CC-EEEEEEEEcCCCcEEEEEeC--CcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHHHH
Confidence 4899999643 44 48888888877788887776 5678889999999888754 899887553322 357
Q ss_pred HHHHhhCCCcccccc
Q 025164 177 TKACKELDIKPIPSK 191 (257)
Q Consensus 177 ~kAc~eLgI~v~PSR 191 (257)
...|+++||...-++
T Consensus 71 ~~~~~~~gi~~~~~~ 85 (152)
T 3kks_A 71 ENLCKYLGITKTTGI 85 (152)
T ss_dssp HHHHHHTTCEEEESS
T ss_pred HHHHHHcCCeecccC
Confidence 888999999887664
No 2
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=93.13 E-value=0.43 Score=39.79 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=66.0
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|++||-.-+. .+| +.|=++|.|.-+.+.+...+. ..++..+.++|+.++...| .|..|+.=+..-. ..
T Consensus 10 ~~~w~~D~~~~~~--~~g-~~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~ 82 (238)
T 1c0m_A 10 LQIWQTDFTLEPR--MAP-RSWLAVTVDTASSAIVVTQHG--RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTSKS 82 (238)
T ss_dssp TSEEEEEEEECGG--GCS-SCEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHSHH
T ss_pred CCEEEEeeccccc--cCC-CEEEEEEEECCCCCEEEEEcc--CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccccHH
Confidence 4689999985443 234 588899999888888887776 6899999999999999865 4888887554322 34
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
++..|+++||...-++
T Consensus 83 ~~~~~~~~gI~~~~~~ 98 (238)
T 1c0m_A 83 TREWLARWGIAHTTGI 98 (238)
T ss_dssp HHHHHHHHTCEEEECC
T ss_pred HHHHHHHCCCEEEecC
Confidence 6788999999876544
No 3
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=92.89 E-value=0.38 Score=37.13 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=64.0
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHH-HH-HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ-MQ-TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~Q-M~-nm 175 (257)
...|++||-.-+. .+|+ .|=++|.|.-+.+.+.-.+. ..++..+.++|+.++...| .|..|+.=|.. .. ..
T Consensus 11 ~~~~~~D~~~~~~--~~g~-~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~ 83 (162)
T 1cxq_A 11 LQIWQTDFTLEPR--MAPR-SWLAVTVDTASSAIVVTQHG--RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTSKS 83 (162)
T ss_dssp CCEEEEEEEECGG--GTTS-CEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHSHH
T ss_pred CCEEEeeeeeccc--CCCC-EEEEEEEEcCCCeEEEEECC--CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhhHH
Confidence 3689999986444 3454 77788888777777776676 5888899999999999765 48888764432 21 34
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
+...|+++||...-++
T Consensus 84 ~~~~~~~~gi~~~~~~ 99 (162)
T 1cxq_A 84 TREWLARWGIAHTTGI 99 (162)
T ss_dssp HHHHHHHHTCEEECCC
T ss_pred HHHHHHHCCCeEeeCC
Confidence 6788999999988765
No 4
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=92.51 E-value=0.43 Score=37.73 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=62.2
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|++||.. |+...+| +.|=++|.|.-+.+.+...+. .-++..+.++|+.++.. ..|..|+.=+..-+ ..
T Consensus 13 ~~~~~~D~~~-~~~~~~g-~~y~~~~iD~~Sr~~~~~~~~--~~~~~~~~~~l~~~~~~---g~p~~i~sDnG~~f~s~~ 85 (200)
T 2x78_A 13 FDKFFIDYIG-PLPPSQG-YLYVLVVVDGMTGFTWLYPTK--APSTSATVKSLNVLTSI---AIPRVIHSDQGAAFTSST 85 (200)
T ss_dssp TSEEEEEEEC-CCSCBTT-BCEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHTTT---CCCSEEEECSCHHHHSHH
T ss_pred ccEEEEEEeC-CCccCCC-CeEEEEEEeCCCCcEEEEECC--CCCHHHHHHHHHHHHHh---CCCcEEEecCCcceehHH
Confidence 4689999953 3333456 678888888777788887774 45666778889877763 45888887654322 34
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
+...|+.+||...-++
T Consensus 86 ~~~~~~~~gi~~~~~~ 101 (200)
T 2x78_A 86 FAEWAKERGIHLEFST 101 (200)
T ss_dssp HHHHHHHHTCEEEECC
T ss_pred HHHHHHHcCceEeECC
Confidence 7888999999887665
No 5
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=86.33 E-value=0.68 Score=40.68 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=62.1
Q ss_pred cccccccccccccc--cCCCc--eeEEEEEeeCCCceEEE-ecCCCCCCCHHHHHHHHHHHHhhcCCCCCC--eeee---
Q 025164 98 ITEWELDFCSRPIL--DIRGK--KIWELVVCDGSLSLQYT-KYFPNNVINSITLKEAIVAICDDLGVPIPE--KIRF--- 167 (257)
Q Consensus 98 m~iWELDFYSRPil--D~~GK--KlWELLICDs~~~F~y~-~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~--~IRf--- 167 (257)
..+||.|+..-.+. +.+|+ +.|=++|-|.-+..... ..+++ -|+.-+..+|..|+...| .|. .|..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~ivg~~~~~~--~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG 91 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVS--ENIDSIRLSFMDVVTRYG--IPEDFHITIDNT 91 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCCEEEEEEESS--CCHHHHHHHHHHHHHHHC--EESSCEEECCCT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCcEEEEEEECC--CCHHHHHHHHHHHHHhcC--CCCCcEEEeeCc
Confidence 57999998766654 44576 57778887876443333 33442 388888999999999765 477 6654
Q ss_pred --eHHHHH--------------HHHHHHHhhCCCcccccc
Q 025164 168 --FRSQMQ--------------TIITKACKELDIKPIPSK 191 (257)
Q Consensus 168 --FR~QM~--------------nmI~kAc~eLgI~v~PSR 191 (257)
|++... .-+..+|+++||.+.-+|
T Consensus 92 ~~f~s~~~~g~~~~~~~~~~~~~~~~~~~~~lgI~~~~~~ 131 (327)
T 1bco_A 92 RGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTS 131 (327)
T ss_dssp TSTTTTTTSCCCTTTTBSCBCCCCHHHHHHHHTCEEECSS
T ss_pred hhhccccccccccccccccccccchhhHHHhcCeEEEecC
Confidence 655433 123578999999988776
No 6
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=85.80 E-value=3.6 Score=33.11 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred ccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HHH
Q 025164 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII 176 (257)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nmI 176 (257)
..|++||-. .|++ +=|+|.|.-+.+.+...+++ .++..+..+|..++...| |..|..=|..-+ ..+
T Consensus 61 ~~w~~D~t~------~~~~-y~~~~iD~~Sr~~~~~~~~~--~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~~~ 128 (219)
T 3hph_A 61 DHWQVDYTH------YEDK-IILVWVETNSGLIYAERVKG--ETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAEST 128 (219)
T ss_dssp CEEEEEEEE------ETTE-EEEEEEETTTCCEEEEEESC--CCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSHHH
T ss_pred ceEEEEEec------CCCE-EEEEEEeCCCCcEEEEEeCC--CCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhHHH
Confidence 589999952 2443 77888887777777776664 467788889988888764 888887554433 367
Q ss_pred HHHHhhCCCccccccc
Q 025164 177 TKACKELDIKPIPSKR 192 (257)
Q Consensus 177 ~kAc~eLgI~v~PSRR 192 (257)
...|+++||...-|+.
T Consensus 129 ~~~~~~~gi~~~~s~p 144 (219)
T 3hph_A 129 QLLMKYLGIEHTTGIP 144 (219)
T ss_dssp HHHHHHHTCEEEESCC
T ss_pred HHHHHHcCCeEeECCC
Confidence 8899999998776543
No 7
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=82.21 E-value=4.4 Score=30.79 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=59.1
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|+.||-.- .| .+=++|.|.-+.+.+...+++. ++..+..+|..++...| +..|+.=|..-. ..
T Consensus 9 ~~~w~~D~t~~-----~g--~y~~~~iD~~sr~~~~~~~~~~--~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~s~~ 76 (163)
T 3l3u_A 9 PGIWQLDCTHL-----EG--KVILVAVHVASGYIEAEVIPAE--TGQETAYFLLKLAGRWP---VKTVHTDNGSNFTSTT 76 (163)
T ss_dssp TTEEEEEEEEE-----TT--EEEEEEEETTTCCEEEEEESSC--CHHHHHHHHHHHHHHSC---CCEEEECCCGGGGSHH
T ss_pred CCEEEEEeccc-----CC--cEEEEEEecCCCcEEEEEeCCC--cHHHHHHHHHHHHHHcC---CcEEeecChHhhhhHH
Confidence 46899999642 35 3777888887778888888754 88889999998888643 466665442221 45
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
+...|+++||...-|+
T Consensus 77 ~~~~~~~~gi~~~~~~ 92 (163)
T 3l3u_A 77 VKAACDWAGIKQEDGI 92 (163)
T ss_dssp HHHHHHHHTCEEEETC
T ss_pred HHHHHHHCCceeeeCC
Confidence 7888999999877664
No 8
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=75.41 E-value=4.1 Score=30.38 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeee-----eHHHH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRF-----FRSQM 172 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRf-----FR~QM 172 (257)
...|+.||-.- +|| +=|.+.|.-+.+.+...+++ -++..+..++.+++...| |..|+. |.+.
T Consensus 9 ~~~w~~D~~~~-----~g~--~~l~~iD~~Sr~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~sDnG~~f~s~- 75 (164)
T 1c6v_A 9 LGTWQMDCTHL-----EGK--IVIVAVHVASGFIEAEVIPQ--ETGRQTALFLLKLAGRWP---ITHLHTDNGANFASQ- 75 (164)
T ss_dssp TTEEEEEEEEE-----TTE--EEEEEECTTSCCEEEEECSS--CSHHHHHHHHHHHHTTSC---CCEEECCCCSSTTSS-
T ss_pred CCEEEEeeccc-----CCE--EEEEEEEccCCEEEEEEcCC--CchHHHHHHHHHHHHhcC---CCEEEeCCchhhhhH-
Confidence 46899998643 565 55666666666777777764 567778888887776532 556643 4333
Q ss_pred HHHHHHHHhhCCCcccccc
Q 025164 173 QTIITKACKELDIKPIPSK 191 (257)
Q Consensus 173 ~nmI~kAc~eLgI~v~PSR 191 (257)
.++..|+.+||....++
T Consensus 76 --~~~~~~~~~gi~~~~~~ 92 (164)
T 1c6v_A 76 --EVKMVAWWAGIEHTFGV 92 (164)
T ss_dssp --HHHHHHHHHTCEEECC-
T ss_pred --HHHHHHHHcCCeEeECC
Confidence 45778889999887653
No 9
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=70.46 E-value=21 Score=31.14 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=60.2
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|.+||.- |+...+| +.+=|+|.|.-+.+.+...+.. .++.-...+| .++...| .|..|+.=|..-+ ..
T Consensus 125 ~~~~~~D~~~-~~~~~~g-~~y~l~~vD~~sr~~~~~~~~~--~~~~~~~~~l-~~~~~~g--~p~~i~sDnG~~f~s~~ 197 (395)
T 3oym_A 125 FDKFFIDYIG-PLPPSQG-YLYVLVVVDGMTGFTWLYPTKA--PSTSATVKSL-NVLTSIA--IPKVIHSDQGAAFTSST 197 (395)
T ss_dssp TSEEEEEEEC-CCSCBTT-BCEEEEEEETTTCCEEEEEESS--SCHHHHHHHH-HHHTTTC--CCSEEEECSCHHHHSHH
T ss_pred ceEEEEEEec-ccCCCCC-ccEEEEEEecCCceEEEEEecC--CcHHHHHHHh-hHhhccC--CceEEEeCCCCceecHH
Confidence 5799999865 3333445 6788888887777777777765 5566666777 5555543 5888886553322 46
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
++..|+++||...-|+
T Consensus 198 ~~~~~~~~gi~~~~s~ 213 (395)
T 3oym_A 198 FAEWAKERGIHLEFST 213 (395)
T ss_dssp HHHHHHHTTCEEEECC
T ss_pred HHHHHHHcCCceeecC
Confidence 7888999999876554
No 10
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=62.68 E-value=42 Score=26.22 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=55.5
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|++||-. + +| +.. |.+.|.-..+.+...++. -++..+..++.+++...| +..|+.=|..-+ ..
T Consensus 29 ~~~w~~D~~~--~---~g-~~~-l~~vD~~Sr~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~i~sDnG~ef~s~~ 96 (183)
T 3av9_A 29 PGIWQLDCTH--L---EG-KVI-LVAVHVASGYIEAEVIPA--ETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTSTT 96 (183)
T ss_dssp TTEEEEEEEE--E---TT-EEE-EEEEETTTTEEEEEEESS--CCHHHHHHHHHHHHHHSC---CCEEECSSHHHHHCHH
T ss_pred CCEEEEeccc--c---CC-cEE-EEEEECCCCCEEEEEeCC--ccchHHHHHHHHHHHHcC---CcEEEecCchhcchHH
Confidence 3589999973 2 55 343 555577677778777765 467788888888777642 366665443222 35
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
+...|+++||...-++
T Consensus 97 ~~~~~~~~gI~~~~s~ 112 (183)
T 3av9_A 97 VKAACWWAGIKQEDGI 112 (183)
T ss_dssp HHHHHHHHTCEEECCC
T ss_pred HHHHHHHCCCEEeecC
Confidence 7889999999987664
No 11
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=59.31 E-value=11 Score=34.77 Aligned_cols=92 Identities=11% Similarity=-0.104 Sum_probs=53.0
Q ss_pred ccccccccccccc--ccCCCce--eEEEEEeeCC-CceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCee-----ee
Q 025164 98 ITEWELDFCSRPI--LDIRGKK--IWELVVCDGS-LSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKI-----RF 167 (257)
Q Consensus 98 m~iWELDFYSRPi--lD~~GKK--lWELLICDs~-~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~I-----Rf 167 (257)
+.+||+|+..-.+ .|.+|+. .|=.++-|.- +.+---..++ .-||.-...+|..++...|.+.+..| .-
T Consensus 187 ~e~~~~D~t~~dv~~~~~~g~~~Rp~l~~~iD~~SR~i~g~~~~~--~~~~~~~~~~l~~a~~~~g~p~~~~i~~Dng~~ 264 (529)
T 4fcy_A 187 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDV--SENIDSIRLSFMDVVTRYGIPEDFHITIDNTRG 264 (529)
T ss_dssp TTEEEEEEEECCSCEECTTSCEECCEEEEEEETTTCCEEEEEEES--SCCHHHHHHHHHHHHHHHCEESSEEEECCCC--
T ss_pred CCEEEeCeEEecceeECCCCCeeeEEEEEEEEccCCcEEEEEecC--CCCHHHHHHHHHHHHHHhCCCCeeEEEeeCchh
Confidence 5799999876654 4667763 3555555544 4433333444 34777788899999988765333223 45
Q ss_pred eHHHHHH--------------HHHHHHhhCCCcccccc
Q 025164 168 FRSQMQT--------------IITKACKELDIKPIPSK 191 (257)
Q Consensus 168 FR~QM~n--------------mI~kAc~eLgI~v~PSR 191 (257)
|++.+.. =++.+|..|||.+..++
T Consensus 265 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~lGI~~~~~~ 302 (529)
T 4fcy_A 265 AANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTS 302 (529)
T ss_dssp ------CCCCSCTTSSCCCCCCHHHHHHHTTEEEEC--
T ss_pred hcchhhccchhhhccccccchhHHHHHHHcCCeEEecC
Confidence 7776542 24678999999877544
No 12
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=57.84 E-value=17 Score=29.05 Aligned_cols=82 Identities=6% Similarity=0.047 Sum_probs=56.3
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|++||- ++ |+ .+=|+|.|.-+.+.+...+++ .++.-+..+|..++...|. | .|+.=|..-+ ..
T Consensus 59 ~~~w~~D~~--~~----~~-~y~l~~vD~~sr~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--~-~i~sDnG~~F~s~~ 126 (210)
T 3f9k_A 59 LGTWQMDCT--HL----EG-KIIIVAVHVASGFIEAEVIPQ--ESGRQTALFLLKLASRWPI--T-HLHTDNGANFTSQE 126 (210)
T ss_dssp TTEEEEEEE--EE----TT-EEEEEEEETTTTEEEEEEESS--CCHHHHHHHHHHHHTTSCC--S-EEEECCCTTTSSHH
T ss_pred CCeEeEeec--cc----CC-eEEEEEEEcCCCcEEEEEeCC--cchHHHHHHHHHHHHHcCC--C-EEEeCCCchhhHHH
Confidence 358999982 22 33 467777887777887777776 5888889999988876542 4 4765433222 35
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
++..|+++||...-|+
T Consensus 127 ~~~~~~~~gi~~~~s~ 142 (210)
T 3f9k_A 127 VKMVAWWIGIEQSFGV 142 (210)
T ss_dssp HHHHHHHHTCEEEESS
T ss_pred HHHHHHHCCCceeeCC
Confidence 6788999999877553
No 13
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=51.22 E-value=46 Score=26.31 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred ccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHH--HHHH
Q 025164 99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQM--QTII 176 (257)
Q Consensus 99 ~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM--~nmI 176 (257)
..|++||-.- |++ +=|++.|.-+.+.+...+++. ++.-+..++..++...| +..|+.=|..- ...+
T Consensus 59 ~~w~~D~~~~------~~~-~~l~~vD~~Sr~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~i~sDnG~~f~s~~~ 126 (212)
T 1k6y_A 59 GIWQLDCTHL------EGK-VILVAVHVASGYIEAEVIPAE--TGQETAYFLLKLAGRWP---VKTVHTDNGSNFTSTTV 126 (212)
T ss_dssp TEEEEEEEEE------TTE-EEEEEEETTTTEEEEEEESSC--CHHHHHHHHHHHHHHSC---CCEEECCCSTTTTSHHH
T ss_pred CeeeEEEecC------CCe-EEEEEEEccCCcEEEEEecCc--chHHHHHHHHHHHHhcC---CeEEEcCCCcccccHHH
Confidence 5899999642 454 556666777778888777765 45556667776666432 46665433211 2346
Q ss_pred HHHHhhCCCcccccc
Q 025164 177 TKACKELDIKPIPSK 191 (257)
Q Consensus 177 ~kAc~eLgI~v~PSR 191 (257)
...|+++||...-|+
T Consensus 127 ~~~~~~~gi~~~~s~ 141 (212)
T 1k6y_A 127 KAACDWAGIKQEDGI 141 (212)
T ss_dssp HHHHHHHTCEECCC-
T ss_pred HHHHHHCCCeeeECC
Confidence 788999999887664
No 14
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=44.73 E-value=83 Score=25.66 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=52.3
Q ss_pred cccccccccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH--HH
Q 025164 98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI 175 (257)
Q Consensus 98 m~iWELDFYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~--nm 175 (257)
...|++||-.- +| + +=|++.|.-+.+.+...++..... -+..++..++... .|..|+.=|..-+ ..
T Consensus 9 ~~~w~~D~t~~-----~g-~-~~l~~vD~~Sr~i~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~i~sDnG~eF~s~~ 76 (239)
T 1ex4_A 9 PGIWQLDCTHL-----EG-K-VILVAVHVASGYIEAEVIPAETGQ--ETAYFLLKLAGRW---PVKTIHTDNGSNFTGAT 76 (239)
T ss_dssp GGEEEEEEEEE-----TT-E-EEEEEECTTTCCEEEECCSSSSTT--HHHHHHHHHHHHS---CCCEEEECCCHHHHCHH
T ss_pred CCEEEEecccc-----CC-e-EEEEEEECCCCeEEEEEeCCCCHH--HHHHHHHHHHHhc---CCcEEEecCcHHHHHHH
Confidence 35899999532 44 3 345555777788888888865433 3455555555542 2577766443322 45
Q ss_pred HHHHHhhCCCcccccc
Q 025164 176 ITKACKELDIKPIPSK 191 (257)
Q Consensus 176 I~kAc~eLgI~v~PSR 191 (257)
+...|+++||...-|+
T Consensus 77 ~~~~~~~~gI~~~~s~ 92 (239)
T 1ex4_A 77 VRAACDWAGIKQEDGI 92 (239)
T ss_dssp HHHHHTTTTCEECCCC
T ss_pred HHHHHHHCCCeEEECC
Confidence 7889999999876653
No 15
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=32.08 E-value=69 Score=30.99 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=39.8
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHH--------------HHHHHHHHHhhCCCcc
Q 025164 133 TKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ--------------MQTIITKACKELDIKP 187 (257)
Q Consensus 133 ~~~CP~s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~Q--------------M~nmI~kAc~eLgI~v 187 (257)
-.+|. +|..|++.+|+.|-+. ..|-.|.+=+.| ...|+..++++.|+++
T Consensus 24 ~av~~---~n~e~i~Ail~aAee~---~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 24 PSICS---AHPLVIEAAMLRAHRE---KAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp EEECC---CCHHHHHHHHHHHHHS---CSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred EEeCc---CCHHHHHHHHHHHHHh---CCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 34555 8899999999988885 579999988765 4678999999999996
No 16
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=28.06 E-value=29 Score=27.30 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=17.5
Q ss_pred HHHHHhhCCCccccccchHHHHHHHHH
Q 025164 176 ITKACKELDIKPIPSKRCLSLLLWLEE 202 (257)
Q Consensus 176 I~kAc~eLgI~v~PSRRT~AL~~WLeE 202 (257)
+..+|+..|| ||++| +++||.+
T Consensus 31 l~~i~~~~~~---ps~~T--~~~W~~~ 52 (140)
T 4dyq_A 31 LLKVCKRPGM---PDKST--VFRWLAK 52 (140)
T ss_dssp HHHHHTSTTC---CCHHH--HHHHHHH
T ss_pred HHHHHhcCCC---CCHHH--HHHHHHc
Confidence 5778999998 78877 5689876
No 17
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=26.34 E-value=1.1e+02 Score=27.60 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHH--------HHHHHHHHHhhCCCccc
Q 025164 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ--------MQTIITKACKELDIKPI 188 (257)
Q Consensus 139 s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~Q--------M~nmI~kAc~eLgI~v~ 188 (257)
|..|..|++..|+.|-+. ..|-.|++.... +..|+..+++..+|+|.
T Consensus 24 Nv~n~e~~~avl~AAe~~---~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPVa 78 (286)
T 1gvf_A 24 NIHNAETIQAILEVCSEM---RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLA 78 (286)
T ss_dssp ECCSHHHHHHHHHHHHHH---TCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBE
T ss_pred eeCCHHHHHHHHHHHHHh---CCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEE
Confidence 567888888888877775 679999998865 35788889999999875
No 18
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=25.20 E-value=65 Score=28.69 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=45.2
Q ss_pred ccccccc---ccccccccCCCceeEEEEEeeCCCceEEEecCCCCCCC-HHHHHHHHHHHHhhcCCCCCCeeeee
Q 025164 98 ITEWELD---FCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVIN-SITLKEAIVAICDDLGVPIPEKIRFF 168 (257)
Q Consensus 98 m~iWELD---FYSRPilD~~GKKlWELLICDs~~~F~y~~~CP~s~VN-S~WL~~AL~~Ai~~~~~~~P~~IRfF 168 (257)
+.+||.| +|+..--+..+-.+|--+++|..+.|+|....|..--- ..==..+|..++...+ ..|--|-|+
T Consensus 122 VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~-~RpaHIH~~ 195 (254)
T 2boy_A 122 LDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHA-WRPAHLHWI 195 (254)
T ss_dssp EEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCC-EECCEEEEE
T ss_pred EEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCccccCCCCCcHHHHHHhccccc-CCCceEEEE
Confidence 6799999 99886544455667888999999999999988875321 1112233444444432 345656554
No 19
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=23.69 E-value=1e+02 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=26.0
Q ss_pred CCCeeeee-----HHHHHHHHHHHHhhCCCccccccchHH
Q 025164 161 IPEKIRFF-----RSQMQTIITKACKELDIKPIPSKRCLS 195 (257)
Q Consensus 161 ~P~~IRfF-----R~QM~nmI~kAc~eLgI~v~PSRRT~A 195 (257)
.|-.|.+. +.++..+|+..++++||++...--..+
T Consensus 127 ~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~~~ 166 (259)
T 3pam_A 127 LPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTVDDS 166 (259)
T ss_dssp CBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred cEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 34455543 567888999999999999988766554
No 20
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=23.52 E-value=1.2e+02 Score=28.21 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHHH------------------HHHHHHHhhCCCcccc
Q 025164 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ------------------TIITKACKELDIKPIP 189 (257)
Q Consensus 139 s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM~------------------nmI~kAc~eLgI~v~P 189 (257)
|..|+.|++..|+.|-+. .+|-.|++...... .|+..++++.+|+|.-
T Consensus 27 Nv~n~e~~~Avl~AAee~---~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaL 92 (349)
T 3elf_A 27 NCTSSETVNAAIKGFADA---GSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVAL 92 (349)
T ss_dssp ECCSHHHHHHHHHHHHHT---TCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred eeCCHHHHHHHHHHHHHh---CCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 556888888888877664 67999999976543 3566778889998854
No 21
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.44 E-value=60 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=15.4
Q ss_pred HHHHHhhCCCccccccchHHHHHHHHH
Q 025164 176 ITKACKELDIKPIPSKRCLSLLLWLEE 202 (257)
Q Consensus 176 I~kAc~eLgI~v~PSRRT~AL~~WLeE 202 (257)
+++||+.||| ||+ +|..+|++
T Consensus 35 ~~~aA~~LGi----sr~--tL~rklkk 55 (63)
T 3e7l_A 35 LKRTAEEIGI----DLS--NLYRKIKS 55 (63)
T ss_dssp HHHHHHHHTC----CHH--HHHHHHHH
T ss_pred HHHHHHHHCc----CHH--HHHHHHHH
Confidence 6799999999 455 46666653
No 22
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=21.37 E-value=1.5e+02 Score=27.15 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHH-------HHHHHHHHhhCCCcccc
Q 025164 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRSQM-------QTIITKACKELDIKPIP 189 (257)
Q Consensus 139 s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM-------~nmI~kAc~eLgI~v~P 189 (257)
|..|..|++..|+.|-+. .+|-.|++..... ..++..++++.+|+|.-
T Consensus 33 Nv~n~e~~~Avl~AAee~---~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaL 87 (306)
T 3pm6_A 33 CVYNLEGILAIIRAAEHK---RSPAMILLFPWAIQYADSLLVRTAASACRAASVPITL 87 (306)
T ss_dssp ECSSHHHHHHHHHHHHHT---TCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEE
T ss_pred eeCCHHHHHHHHHHHHHh---CCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEE
Confidence 456888998888877664 6799999987543 35677788889998853
No 23
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=20.81 E-value=1.6e+02 Score=27.05 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCeeeeeHHHH--------HHHHHHHHhh-CCCccc
Q 025164 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRSQM--------QTIITKACKE-LDIKPI 188 (257)
Q Consensus 139 s~VNS~WL~~AL~~Ai~~~~~~~P~~IRfFR~QM--------~nmI~kAc~e-LgI~v~ 188 (257)
|..|..|++..|+.|-+. .+|-.|++.+... ..|+..|+++ .+|+|.
T Consensus 24 Nv~n~e~~~Ail~AAee~---~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPVa 79 (323)
T 2isw_A 24 NVNNMEQIQGIMKAVVQL---KSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPIC 79 (323)
T ss_dssp ECCSHHHHHHHHHHHHHT---TCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEE
T ss_pred eeCCHHHHHHHHHHHHHh---CCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEE
Confidence 556788888888776664 6799999998764 3688888887 788765
No 24
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=20.00 E-value=78 Score=22.50 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHhhCCCccccccchHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCe
Q 025164 176 ITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDK 240 (257)
Q Consensus 176 I~kAc~eLgI~v~PSRRT~AL~~WLeERy~~vYp~~pGy~~~~~~p~~ld~p~P~PLPDaL~GEk 240 (257)
+..+|+++|| |+. +|.+|+.+-...- .......|..++....||+
T Consensus 41 ~~~iA~~~gI----s~s--Tl~rW~k~~~~~~--------------~~~~~~~~~~~~~~~l~~~ 85 (87)
T 2elh_A 41 KASVARDIGV----PES--TLRGWCKNEDKLR--------------FMSRQSATDNLCADALGDK 85 (87)
T ss_dssp HHHHHHHHTC----CHH--HHHHHHHHHHHHH--------------HHTTCCCCCCSCSCCCCCC
T ss_pred HHHHHHHHCc----CHH--HHHHHHHHHHhcc--------------ccccCCCccccchhhhccc
Confidence 5678999998 343 4789996542211 1123334556676667765
Done!