BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025165
(257 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/245 (76%), Positives = 209/245 (85%), Gaps = 7/245 (2%)
Query: 20 EPRHDVSGKRRREDGEI----EGSD---PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRI 72
EP H V+GKRRRED I + SD PKR+AKA DVLFRI+VPS+QIGKVIGK G RI
Sbjct: 32 EPGHTVTGKRRREDDLIVSNSDASDISAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRI 91
Query: 73 QKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
QK+REETKATIKIADA+AR+EERVIIISSKDN+N V+DAE ALQQIAALILK+D S+ E
Sbjct: 92 QKVREETKATIKIADAVARYEERVIIISSKDNENSVTDAEKALQQIAALILKEDGSSIEE 151
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
KV GHVAANTIRLLIAGSQAG LIG SGQNIEKLRNSSGA+I ILAPNQLPLCASAHE
Sbjct: 152 LKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHE 211
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGQPL 252
SDRVVQISGD+ AVL AL EIGNQLR NPPRQVIS+SP YNY+ + P Q +++PTSG+P+
Sbjct: 212 SDRVVQISGDILAVLKALEEIGNQLRVNPPRQVISVSPTYNYNTMHPPQSYMDPTSGKPI 271
Query: 253 LQLTM 257
LQL M
Sbjct: 272 LQLIM 276
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 362 bits (930), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 185/229 (80%), Positives = 206/229 (89%), Gaps = 7/229 (3%)
Query: 26 SGKRRREDGEIEG--SDPK----RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
SGKRRR+D E G S P+ +RAK QDV+FRI+VPSRQIGKVIGKEGHRIQKIRE+T
Sbjct: 73 SGKRRRDD-ENSGTASAPEQSAAKRAKGQDVIFRIVVPSRQIGKVIGKEGHRIQKIREDT 131
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
KATIKIADAIARHEERVIIISSKDND V+DAE AL+QIA LILK+DDS+ +ASKV AGH
Sbjct: 132 KATIKIADAIARHEERVIIISSKDNDEKVTDAEKALEQIAHLILKEDDSSLDASKVTAGH 191
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
VAANTIRLLIAGSQAG LIGMSGQNIEKLR+SSGA+I +LAPNQLPLCASAHESDRVVQ+
Sbjct: 192 VAANTIRLLIAGSQAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQL 251
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS 248
SGDVPAV+ AL EIG QLRENPPRQVISISP YNY+AIRP+QP+++PTS
Sbjct: 252 SGDVPAVMKALEEIGCQLRENPPRQVISISPTYNYAAIRPSQPYLDPTS 300
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 26/150 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-------AIARHEERVIIISSKDN 104
R+++ Q G +IG G I+K+R+ + A+I + A A +RV+ +S
Sbjct: 197 IRLLIAGSQAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGD-- 254
Query: 105 DNVVSDAENALQQIAALILKDDD----SNSEASKVAA----------GHVAANTIRLLIA 150
V AL++I + ++ S S AA V T +LI+
Sbjct: 255 ---VPAVMKALEEIGCQLRENPPRQVISISPTYNYAAIRPSQPYLDPTSVDYVTFEMLIS 311
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ G LIG G NI ++RN SGA I +
Sbjct: 312 ETMVGGLIGRCGSNISRIRNESGAMIKVYG 341
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/254 (73%), Positives = 215/254 (84%), Gaps = 8/254 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPR-HDVSGKRRREDGEI----EGSDPKRRAKAQDVLFRII 55
M + G I +N TV V+ P P + + KRRR++ ++ EGS KR AKAQDV+FRI+
Sbjct: 19 MPQPGGIPMN-TVPPVSFPPPDIYAATAKRRRDEFDVADEPEGSAAKR-AKAQDVIFRIV 76
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VPSRQIGKVIGK G RIQKIREETKATIKIADAIARHEERVIIISSK++D VVSDAENAL
Sbjct: 77 VPSRQIGKVIGKVGCRIQKIREETKATIKIADAIARHEERVIIISSKESDCVVSDAENAL 136
Query: 116 QQIAALILKDDDSNSEASKV-AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++IA LILK+D+S +E+SKV AGH+ ANTIRLLIAGSQAG LIG+SGQNIEKLRNSSGA
Sbjct: 137 KKIATLILKEDESPAESSKVVGAGHLGANTIRLLIAGSQAGSLIGVSGQNIEKLRNSSGA 196
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
TI +LAPNQLPLCASAHESDRVVQISGDVP VL A+ EIG QLRENPP+QVISISP YNY
Sbjct: 197 TITVLAPNQLPLCASAHESDRVVQISGDVPVVLKAVEEIGCQLRENPPKQVISISPTYNY 256
Query: 235 SAIRPAQPFVEPTS 248
+ +RP QP+V+PTS
Sbjct: 257 ATVRPTQPYVDPTS 270
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-------AIARHEERVIIISSKDND 105
R+++ Q G +IG G I+K+R + ATI + A A +RV+ IS +
Sbjct: 168 RLLIAGSQAGSLIGVSGQNIEKLRNSSGATITVLAPNQLPLCASAHESDRVVQISG--DV 225
Query: 106 NVVSDA---------ENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQA 154
VV A EN +Q+ ++ + + ++ +A+ T+ ++++ +
Sbjct: 226 PVVLKAVEEIGCQLRENPPKQVISISPTYNYATVRPTQPYVDPTSADYVTLEMMVSETLV 285
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILA 180
G LIG G NI ++RN SGA I +
Sbjct: 286 GGLIGRCGSNISRIRNESGAMIKVYG 311
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/259 (71%), Positives = 208/259 (80%), Gaps = 12/259 (4%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q+A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLRENPPRQVISIS
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISIS 239
Query: 230 PAYNYSAIRPAQPFVEPTS 248
P YN + R +Q +++P S
Sbjct: 240 PIYNPNTNRTSQQYLDPAS 258
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 37/173 (21%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ Q G +IG G I+K+R + ATI I + + S+ D+D +V +
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILP----QNQLPLCASAHDSDRMVQIS 210
Query: 112 EN------ALQQIAALI-------------LKDDDSNSEASKV----AAGHVAANTIRLL 148
+ AL++I + + + ++N + + +A +V T+ ++
Sbjct: 211 GDVPAVLKALEEIGCQLRENPPRQVISISPIYNPNTNRTSQQYLDPASADYV---TLNMM 267
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
I + G LIG G NI ++RN SGA I + ++ R +Q G
Sbjct: 268 IPETLVGGLIGRCGSNISRIRNESGAMIKVYG-------GKGEQNHRQIQFGG 313
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/259 (71%), Positives = 208/259 (80%), Gaps = 12/259 (4%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q+A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLRENPPRQVISIS
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISIS 239
Query: 230 PAYNYSAIRPAQPFVEPTS 248
P YN + R +Q +++P S
Sbjct: 240 PIYNPNTNRTSQQYLDPAS 258
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 37/173 (21%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ Q G +IG G I+K+R + ATI I + + S+ D+D +V +
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILP----QNQLPLCASAHDSDRMVQIS 210
Query: 112 EN------ALQQIAALI-------------LKDDDSNSEASKV----AAGHVAANTIRLL 148
+ AL++I + + + ++N + + +A +V T+ ++
Sbjct: 211 GDVPAVLKALEEIGCQLRENPPRQVISISPIYNPNTNRTSQQYLDPASADYV---TLNMM 267
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
I + G LIG G NI ++RN SGA I + ++ R +Q G
Sbjct: 268 IPETLVGGLIGRCGSNISRIRNESGAMIKVYG-------GKGEQNHRQIQFGG 313
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 163/208 (78%), Positives = 178/208 (85%), Gaps = 7/208 (3%)
Query: 20 EPRHDVSGKRRREDGEI----EGSD---PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRI 72
EP H V+GKRRRED I + SD PKR+AKA DVLFRI+VPS+QIGKVIGK G RI
Sbjct: 32 EPGHTVTGKRRREDDLIVSNSDASDVSAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRI 91
Query: 73 QKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
QK+REETKATIKIADA+AR+EERVIIISSKDN+N V+DAE ALQQIAALILK+D S+ E
Sbjct: 92 QKVREETKATIKIADAVARYEERVIIISSKDNENSVTDAEKALQQIAALILKEDGSSIEE 151
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
KV GHVAANTIRLLIAGSQAG LIG SGQNIEKLRNSSGA+I ILAPNQLPLCASAHE
Sbjct: 152 LKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHE 211
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
SDRVVQISGD+ AVL AL EIGNQLR+
Sbjct: 212 SDRVVQISGDILAVLKALEEIGNQLRKT 239
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ Q G +IG G I+K+R + A+I I + + S+ ++D VV +
Sbjct: 164 IRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAP----NQLPLCASAHESDRVVQIS 219
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ L + AL ++ + + +A +V T +LI+ + G LIG+ G NI ++RN
Sbjct: 220 GDILAVLKAL--EEIGNQLRKTNLAVNYV---TFEMLISETLVGGLIGIGGFNISRIRNE 274
Query: 172 SGATI 176
SGATI
Sbjct: 275 SGATI 279
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/229 (72%), Positives = 183/229 (79%), Gaps = 12/229 (5%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++ E+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEAEVPKTP-IPQSEAPAPSESTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQXASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLR
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLR 228
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ Q G +IG G I+K+R + ATI I + + S+ D+D +V +
Sbjct: 155 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILP----QNQLPLCASAHDSDRMVQIS 210
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + AL ++ + +AA +V T+ ++I + G LIG G NI ++RN
Sbjct: 211 GDVPAVLKAL--EEIGCQLRTTNLAADYV---TLNMMIPETLVGGLIGRCGSNISRIRNE 265
Query: 172 SGATIVILA 180
SGA I +
Sbjct: 266 SGAMIKVYG 274
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 174/252 (69%), Positives = 201/252 (79%), Gaps = 11/252 (4%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRH-DVSGKRRREDGEI-EGSDPKRRAKAQDVLFRIIVPS 58
MA+ E+ +NP+ P+ V+ KRRR+D + E S KR+A+A DV+FRI+VPS
Sbjct: 1 MAQPWELQLNPSPPGTELPKLNALPVTAKRRRDDFDGGETSAAKRQARA-DVIFRIVVPS 59
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+IGKVIGK+GHRIQKIRE+TKATIKIADA+ARHEERVIIISSK+N+N +DAENALQ+I
Sbjct: 60 GKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIIISSKENENGATDAENALQRI 119
Query: 119 AALILKDDDSNSEASK-------VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A LIL +DD S A V AGHVAANTIRLLIAGSQAG LIGMSGQNI KLRNS
Sbjct: 120 AELILNEDDGGSSAGGGVEIGKLVNAGHVAANTIRLLIAGSQAGSLIGMSGQNIVKLRNS 179
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
SGA I +LAPNQLPLCASA+ESDRVVQISGDVP VL AL EIG QLRENPP+QVISISP+
Sbjct: 180 SGAMITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGCQLRENPPKQVISISPS 239
Query: 232 YNYSAIRPAQPF 243
YNYSA+ P Q +
Sbjct: 240 YNYSAV-PFQQY 250
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-------AIARHEERVIIISSKDN 104
R+++ Q G +IG G I K+R + A I + A A +RV+ IS +
Sbjct: 153 IRLLIAGSQAGSLIGMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYESDRVVQISG--D 210
Query: 105 DNVVSDA---------ENALQQIAALILKDDDS----NSEASKVAAGHVAANTIRLLIAG 151
VV A EN +Q+ ++ + S A + AA +V T+ +++
Sbjct: 211 VPVVLKALEEIGCQLRENPPKQVISISPSYNYSAVPFQQYAPQAAADYV---TMEMMVPE 267
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATI 176
+ G LIG SG NI ++R SGA I
Sbjct: 268 TMMGGLIGRSGSNISRIRVESGAVI 292
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 172/209 (82%), Gaps = 9/209 (4%)
Query: 19 PEPRHDV----SGKRRREDGEIEGSDPK-----RRAKAQDVLFRIIVPSRQIGKVIGKEG 69
P HD S KRRR+D ++ + +RAK QDV+FRI+VPS+QIGKVIGKEG
Sbjct: 60 PYSTHDAGYPSSMKRRRDDEDLGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEG 119
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129
RIQKIRE T+A IKIADAIARHEERVIIISSKDND +V+DAE AL+QIA LILK+D+S+
Sbjct: 120 CRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTDAEKALEQIANLILKEDNSS 179
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ASK+ AGHVAANTIRLLIAGSQAG LIGMSGQNIEKLRNSSGA I +LAP+QLPLCAS
Sbjct: 180 FDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCAS 239
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLR 218
AHESDRVVQ+SGDV V+ AL EIG QLR
Sbjct: 240 AHESDRVVQLSGDVSTVMKALEEIGCQLR 268
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 147/209 (70%), Gaps = 2/209 (0%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+G KR A+ +D++FRI+V S +IGKVIGK+G +I ++RE+T A IKIAD + E+RV
Sbjct: 80 KGFRAKRAARGRDIVFRIVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRV 139
Query: 97 IIISSKD-NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IIISSK + S AE AL QIA +IL++ +S +KV HV N +RLLIAGSQAG
Sbjct: 140 IIISSKGEEEEETSAAEQALIQIATVILEESGESSATAKVGTRHVGPNMMRLLIAGSQAG 199
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG SG+ I+++RN SGATI IL N P+CASA E+DR+VQISG+V VL AL IG
Sbjct: 200 SLIGASGKTIKEIRNDSGATIKILPQNLSPICASASETDRLVQISGEVSQVLKALDHIGV 259
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFV 244
LRE+PPR+VIS P Y Y+ + PA +
Sbjct: 260 TLREHPPREVISTRPTY-YAGLSPANGLM 287
>gi|147794644|emb|CAN66855.1| hypothetical protein VITISV_039970 [Vitis vinifera]
Length = 153
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 102/135 (75%), Gaps = 12/135 (8%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILK 124
DAENAL Q+A+LILK
Sbjct: 120 DAENALLQVASLILK 134
>gi|302814684|ref|XP_002989025.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
gi|300143126|gb|EFJ09819.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
Length = 1034
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 122/175 (69%), Gaps = 6/175 (3%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSD---AENALQ 116
+IGKVIGK+G +I+K+R+ET A IKIAD + E+R ++ISSK+ VSD AE AL
Sbjct: 512 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEG--VSDRSCAELALL 569
Query: 117 QIAALILKDDDSNSEASKVAAGHVAA-NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
++ ++LKD D + ++ + H + N RLLIAGSQAG LIG +G NI+ +R SS A+
Sbjct: 570 EVVTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSAS 629
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230
+ +L +QLPLC++A E+DR+VQISG+V AV A+ + LR+NPP++ + +P
Sbjct: 630 VRVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTNP 684
>gi|302803885|ref|XP_002983695.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
gi|300148532|gb|EFJ15191.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
Length = 1020
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 121/175 (69%), Gaps = 6/175 (3%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSD---AENALQ 116
+IGKVIGK+G +I+K+R+ET A IKIAD + E+R ++ISSK+ SD AE AL
Sbjct: 513 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGG--SDRTCAELALL 570
Query: 117 QIAALILKDDDSNSEASKVAAGHVAA-NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
++ ++LKD D + ++ + H + N RLLIAGSQAG LIG +G NI+ +R SS A+
Sbjct: 571 EVVTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSAS 630
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230
+ +L +QLPLC++A E+DR+VQISG+V AV A+ + LR+NPP++ + +P
Sbjct: 631 VRVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTTP 685
>gi|356566965|ref|XP_003551695.1| PREDICTED: uncharacterized protein LOC100805008 [Glycine max]
Length = 157
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%), Gaps = 5/105 (4%)
Query: 26 SGKRRRED---GEIEGSDPK--RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80
SGKRRR+D G D +RAK QDV+FRI+VPSR IGKVIGKEGHRIQKIRE+TK
Sbjct: 47 SGKRRRDDEAPGTAAAPDQSAAKRAKGQDVIFRIVVPSRHIGKVIGKEGHRIQKIREDTK 106
Query: 81 ATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ATIKIADAIARHEERVIIISSKDND V+DAE AL+QIA LILKD
Sbjct: 107 ATIKIADAIARHEERVIIISSKDNDEKVTDAEKALEQIAHLILKD 151
>gi|357507883|ref|XP_003624230.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499245|gb|AES80448.1| Poly(rC)-binding protein [Medicago truncatula]
gi|388513455|gb|AFK44789.1| unknown [Medicago truncatula]
Length = 193
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 88/115 (76%), Gaps = 9/115 (7%)
Query: 19 PEPRHDV----SGKRRREDGEIEGSDPK-----RRAKAQDVLFRIIVPSRQIGKVIGKEG 69
P HD S KRRR+D ++ + +RAK QDV+FRI+VPS+QIGKVIGKEG
Sbjct: 60 PYSTHDAGYPSSMKRRRDDEDLGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEG 119
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
RIQKIRE T+A IKIADAIARHEERVIIISSKDND +V+DAE AL+QIA LILK
Sbjct: 120 CRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTDAEKALEQIANLILK 174
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD----- 103
DV+FRI+ P+ +IG VIGK G I+ +R+E+ A IKIADAI +ERVI+ISS D
Sbjct: 2 DVVFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGNDR 61
Query: 104 ------NDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
N ++ A+ AL ++ A I+ D + S + S RLL+ +Q GC
Sbjct: 62 GRGKDGNSEELTPAQEALFKVHARIIADVETSGIDGSDQEEEPSQQVVTRLLVPNNQIGC 121
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
L+G G+ IE++R ++GA I +L +QLP C A +D +VQ+SGDV + AL+ I +
Sbjct: 122 LLGKGGKIIEQMRQTTGAQIRVLPKDQLPGC--ALPTDELVQVSGDVSTLKKALLFISAR 179
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
L+ENPPR +Y+A PA FV T
Sbjct: 180 LQENPPR-----DRPQSYAA--PAPAFVPVT 203
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQ 73
PEP S + ++ D +R + +D ++FR++ PS +IG VIGK G I
Sbjct: 224 PEPLEGRSWTISSGNLSLDRQDNRRSKEGRDSGENELVFRLLCPSDKIGSVIGKGGSIIH 283
Query: 74 KIREETKATIKIADAIARHEERVIIISSKD-NDNVVSDAENALQQIAALILKDDDSNSEA 132
+R++T A IKIA+A+ +ERVII+S+ + + S A A+ Q+ + I
Sbjct: 284 NLRKDTGARIKIANAVPGSDERVIIVSALELPGDSFSPALEAMIQVQSRI---------T 334
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+++ T RLL+ +Q GCL+G G IE +R ++ A I +L + LP C A +
Sbjct: 335 AEMGGDKDGIITTRLLVPTNQIGCLLGKGGSIIEDMRRATRANIRVLPKDTLPRC--ALD 392
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+D +VQI GD AL ++ ++LR N R+
Sbjct: 393 TDELVQIVGDTTVAREALFQVISRLRNNAFRE 424
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
E I+GSD + +Q V+ R++VP+ QIG ++GK G I+++R+ T A I++
Sbjct: 91 ETSGIDGSD-QEEEPSQQVVTRLLVPNNQIGCLLGKGGKIIEQMRQTTGAQIRV 143
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 29/245 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ DP + +D ++R + P R+IG +IG+ G ++++R +TK+ I
Sbjct: 20 DNGGNKRRNPGDDR--DPFT-IEPEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTKSKI 76
Query: 84 KIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDD---DSNSEA 132
+I + + EERV+ I S D+D VS A++AL ++ ++ ++ + + EA
Sbjct: 77 RIGETVPGCEERVVTIYSSSDETNAFDDSDTFVSPAQDALFRVHDRVVSEEVHGEDSEEA 136
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
S+V T+RLL+ Q GC+IG GQ I+ +R+ SGA + IL + LP CA +
Sbjct: 137 SQV--------TVRLLVPSDQIGCVIGKGGQIIQSIRSESGAQVRILKDDHLPSCALS-- 186
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISISPAYNYSAIRPAQPFVEPTSGQ 250
SD +VQISG+ V AL +I ++L +NP R +++ + YS+ + PTSG
Sbjct: 187 SDELVQISGEPSLVRKALYQIASRLHDNPSRSQHLLASAVPTGYSS---GGSLMGPTSGA 243
Query: 251 PLLQL 255
P++ L
Sbjct: 244 PIMGL 248
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVI 97
S P+ A +++ R++ P IG VIGK G I +IR+E+ A IK+ + + A ++ +I
Sbjct: 271 SAPRDEASSKEFSLRLVCPIGNIGGVIGKGGVIINQIRQESGAAIKVDSTSAAEADDCLI 330
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS+K+ E+ ++ SE + +G + + T RLL+ S+ GCL
Sbjct: 331 AISAKEF------FEDTFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCL 383
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++R + A I IL+ LP AS E D +VQI+GD+ +AL+++ +L
Sbjct: 384 IGKGGAIITEMRKLTKANIRILSKENLPKVAS--EDDEMVQIAGDLDVAKDALIQVTTRL 441
Query: 218 REN 220
R N
Sbjct: 442 RAN 444
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 30/247 (12%)
Query: 23 HDVSGKRRREDGEIEGSDPKRRA-KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
+D+ G +RR G+ D +R +QD ++R + P+R+IG +IG+ G I+++R +TK+
Sbjct: 18 YDIGGNKRRNSGD----DRERFVIDSQDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTKS 73
Query: 82 TIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD---DSNS 130
I++ + + EERV+ I S +D+ N +S A++AL ++ ++ +D + +S
Sbjct: 74 KIRVGETVPGCEERVVTIYSPSDETNEYEDSGNYISPAQDALFRVHDKVIAEDLQVEDDS 133
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T +LL+ Q GC+IG GQ ++ +R+ +GA I IL LP CA +
Sbjct: 134 EGSPQV-------TAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHLPPCALS 186
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYN-YSAIRPAQPFVEPTS 248
SD +VQISG+ + AL +I ++L +NP R Q + +S N YS++ V P++
Sbjct: 187 --SDELVQISGEAAVLKKALYQIASRLHDNPSRSQHLLVSAVPNVYSSV---GSLVGPSA 241
Query: 249 GQPLLQL 255
P++ +
Sbjct: 242 AAPIVGI 248
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 16/206 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ ++A ++ +I
Sbjct: 271 SAPRDELASKEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLIT 330
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ + S A ++ SE + +G ++ T RLL+ S+ GCL+
Sbjct: 331 ISAKEIYDHYSPTIEAAVRLQPRC-------SEKMERDSGLISFTT-RLLVPSSRIGCLL 382
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+++R + A I I LP AS + D +VQI+GD+ +AL++I +LR
Sbjct: 383 GKGGAIIDEMRKLTKAIIRIPRKENLPKVAS--DDDEMVQIAGDLDVAKDALIQISRRLR 440
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFV 244
N V A SAI P P++
Sbjct: 441 AN----VFDREGA--MSAILPVLPYL 460
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 37/240 (15%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQD----------VLFRIIVPSRQIGKVIGKEGHR 71
RH+ S R+R + + KR D ++RI+ P ++IG V+G+ GH
Sbjct: 8 RHNPSTSRKRTHFNSDDGNRKRLNSRHDDGPMSSQPIETVYRILCPGKKIGSVLGRGGHI 67
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSD--------------------A 111
++ +REETKA I++AD+I EERVIII + + +D A
Sbjct: 68 VKALREETKAKIRVADSIPGAEERVIIIFDYQDQSEQTDEAAQNISNNDGSENMKLQCFA 127
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
++AL +I I +D + A + A T R+L+ G+Q GCL+G G I++LRN
Sbjct: 128 QDALLKIHDKISTHEDPHDGAIHEKSETAADVTARILVPGNQVGCLLGKGGSIIQQLRND 187
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL-----RENPPRQVI 226
+GA I IL LP CA +SD +VQISG V AL EI +L +ENPP + I
Sbjct: 188 TGAGIRILPSQDLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENPPLEEI 245
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+A++ RI+ S IG VIGK G ++++ ++T A I + DA ER+I++SS
Sbjct: 295 EAEEFSVRILCASELIGPVIGKSGANVRQVEQQTGARILVQELDKDASG---ERLIVLSS 351
Query: 102 KD-NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-RLLIAGSQAGCLIG 159
K+ + VS A I ALIL SKV+A + I RL++ S+ GC++G
Sbjct: 352 KEIPGDPVSPA------IEALILLH-------SKVSASSEKRHLITRLVVPSSKVGCILG 398
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I ++R GA I + + P S E +VQ++G +AL EI ++LR
Sbjct: 399 EGGKVITEMRRRIGAEIRVYSKADKPKYLSFDEE--LVQVAGPPDIARDALTEIASRLR 455
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 17/221 (7%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ S R D +FR + P ++IG VIG+ G ++++R +T++ I
Sbjct: 27 DNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKI 83
Query: 84 KIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+I +AI +ERVI I S D + V+S A++AL +I ++ DD+ SE S
Sbjct: 84 RIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVA-DDARSEDSPE 142
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLC A SD
Sbjct: 143 GEKQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLC--ALNSDE 197
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
++QISG+V V AL++I ++L ENP R +S + Y A
Sbjct: 198 LIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPA 238
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 275 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ S+ + +G V+ T RLL+ S+ GC++G
Sbjct: 335 AREV------FEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTT-RLLVPSSRIGCILGK 387
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G I ++R + A I IL LP AS + D +VQ++ V + +L + ++LR
Sbjct: 388 GGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQVNFMVLLLKFSLQFLLSRLR 443
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 17/221 (7%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ S R D +FR + P ++IG VIG+ G ++++R +T++ I
Sbjct: 27 DNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKI 83
Query: 84 KIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+I +AI +ERVI I S D + V+S A++AL +I ++ DD+ SE S
Sbjct: 84 RIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVA-DDARSEDSPE 142
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLC A SD
Sbjct: 143 GEKQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLC--ALNSDE 197
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
++QISG+V V AL++I ++L ENP R +S + Y A
Sbjct: 198 LIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPA 238
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 275 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ S+ + +G V+ T RLL+ S+ GC++G
Sbjct: 335 AREV------FEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTT-RLLVPSSRIGCILGK 387
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL LP AS + D +VQISG++ AL++I ++LR N
Sbjct: 388 GGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQISGELDVAKEALIQITSRLRAN 445
Query: 221 PPRQVISISPAYNYSAIRPAQPFV 244
V A SA+ P P+V
Sbjct: 446 ----VFDREGA--VSALMPVLPYV 463
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 26/241 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +RR GE + ++D ++R + P ++IG VIG+ G ++++R +TK+ I+I
Sbjct: 23 GNKRRSHGE---DRDQFVIDSEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIG 79
Query: 87 DAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDD--DSNSEASKVA 136
+ + +ERVI I S N+ + VS A+ AL +I ++ DD D +SE
Sbjct: 80 ETVPGSDERVITIYSASNETNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSE----G 135
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
GH T RLL+ Q GC+IG GQ ++ +R +GA + IL + LP CA + SD +
Sbjct: 136 GGHQV--TARLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALS--SDEL 191
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN--YSAIRPAQPFVEPTSGQPLLQ 254
VQISG+ V AL +I ++L +NP R ++ A YS+ + PT G P++
Sbjct: 192 VQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPGVYSS---GGSLMAPTHGAPIMG 248
Query: 255 L 255
L
Sbjct: 249 L 249
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ +++ R+I P+ IG VIGK G I +IR+ETKA IK+ + ++ +I IS
Sbjct: 262 PREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINIS 321
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E++ L+ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 322 SKEF------FEDSYSPTLEAALRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLIGK 374
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I +LR + A I IL+ LP A E D +VQISGD+ ALV I +LR N
Sbjct: 375 GGAIITELRRLTKANIRILSKENLP--KVALEDDEMVQISGDLDVAKEALVHIVTRLRAN 432
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 26/241 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +RR GE + ++D ++R + P ++IG VIG+ G ++++R +TK+ I+I
Sbjct: 23 GNKRRSHGE---DRDQFVIDSEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIG 79
Query: 87 DAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDD--DSNSEASKVA 136
+ + +ERVI I S N+ + VS A+ AL +I ++ DD D +SE
Sbjct: 80 ETVPGSDERVITIYSASNETNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSE----G 135
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
GH T RLL+ Q GC+IG GQ ++ +R +GA + IL + LP CA + SD +
Sbjct: 136 GGHQV--TARLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALS--SDEL 191
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN--YSAIRPAQPFVEPTSGQPLLQ 254
VQISG+ V AL +I ++L +NP R ++ A YS+ + PT G P++
Sbjct: 192 VQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPGVYSS---GGSLMAPTHGAPIMG 248
Query: 255 L 255
L
Sbjct: 249 L 249
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ +++ R+I P+ IG VIGK G I +IR+ETKA IK+ + ++ +I IS
Sbjct: 262 PREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINIS 321
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E++ L+ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 322 SKEF------FEDSYSPTLEAALRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLIGK 374
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I +LR + A I IL+ LP A E D +VQISGD+ ALV I +LR N
Sbjct: 375 GGAIITELRRLTKANIRILSKENLP--KVALEDDEMVQISGDLDVAKEALVHIVTRLRAN 432
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 15/216 (6%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D +FR + P R+IG +IG+ G ++++R ETKA I+I + + +ERV+ + S
Sbjct: 45 EDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
D D +VS AE+AL +I ++ +D +S+ + V A +LL+ Q GC++G
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNA---KLLVPSDQIGCVLG 160
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GQ ++ LR+ +GA I IL + +P C A SD +VQISGD V AL +I ++L
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPAC--ALRSDELVQISGDAAVVKKALHQIASRLHH 218
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
NP R + A S + PT+G P++ +
Sbjct: 219 NPSRTQHLLGSAVP-SVYPSGGSLMGPTAGPPIVGM 253
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ +++ R++ P+ +G VIGK G I +IR+++ ATIK+ D+ A+ ++ +I IS+K+
Sbjct: 284 SSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKE- 341
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ + + A L+ SE S+ +G + + T RLL++ S+ GCLIG G
Sbjct: 342 --FFEETFSPTVEAAVLL---QPRCSEKSERDSG-IISFTTRLLVSSSRIGCLIGKGGSI 395
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + + I IL+ LP AS + D +VQISGD+ +ALV++ +LR N
Sbjct: 396 ITEMRRLTKSNIRILSKENLPKIAS--DDDEMVQISGDLDVAKDALVQVLTRLRAN 449
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 15/216 (6%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D +FR + P R+IG +IG+ G ++++R ETKA I+I + + +ERV+ + S
Sbjct: 45 EDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
D D +VS AE+AL +I ++ +D +S+ + V A +LL+ Q GC++G
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNA---KLLVPSDQIGCVLG 160
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GQ ++ LR+ +GA I IL + +P C A SD +VQISGD V AL +I ++L
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPAC--ALRSDELVQISGDAAVVKKALHQIASRLHH 218
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
NP R + A S + PT+G P++ +
Sbjct: 219 NPSRTQHLLGSAVP-SVYPSGGSLMGPTAGPPIVGM 253
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ +++ R++ P+ +G VIGK G I +IR+++ ATIK+ D+ A+ ++ +I IS+K+
Sbjct: 284 SSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKE- 341
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ + + A L+ SE S+ +G + + T RLL++ S+ GCLIG G
Sbjct: 342 --FFEETFSPTVEAAVLLQP---RCSEKSERDSG-IISFTTRLLVSSSRIGCLIGKGGSI 395
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + + I IL+ LP AS + D +VQISGD+ +ALV++ +LR N
Sbjct: 396 ITEMRRLTKSNIRILSKENLPKIAS--DDDEMVQISGDLDVAKDALVQVLTRLRAN 449
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 38/241 (15%)
Query: 24 DVSGK-RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
D +GK + ++ G + + V+FR++ P+ + G VIGK G I +IR+ET
Sbjct: 18 DSNGKGKWQKSGGFYSQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVK 77
Query: 83 IKIADAIARHEERVIIIS------------SKDNDNVVSDAENALQQIAALILK------ 124
+++ + ++ +ERV++I+ SK++D+ V +++Q+ L+ +
Sbjct: 78 VRVEETVSGCDERVVLITGSDKDTEADNEQSKEDDSQVEKGISSVQKALLLVFERMAEGE 137
Query: 125 ------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+DSN + V +RLL+ SQ GCL+G G I+++ SGA I I
Sbjct: 138 SETNGGDEDSNKSPTFV---------VRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRI 188
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISISPAYNYSA 236
L ++LPLCAS SD +VQI+G++ A AL I QL ENPPR ++S +P + S
Sbjct: 189 LPRDKLPLCASP--SDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSSSH 246
Query: 237 I 237
+
Sbjct: 247 L 247
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 301 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 360
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 361 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 411
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 412 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 469
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 470 DAFSVNHPSNPAFTDQVPPF 489
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + PSR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIG 76
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
++++ +ERVI I SS N + DAE +AL ++ + DDD +E S
Sbjct: 77 ESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP CA + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD V AL+++ ++L +NP R
Sbjct: 192 ISGDSTVVRKALLQVSSRLHDNPSR 216
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+E+ A IK+ D+ ++ +I +S+K+ ++ VS NA + + D S
Sbjct: 304 QIRQESGAFIKV-DSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA- 361
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ + T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E
Sbjct: 362 -------IPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--E 412
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +VQISGD+ V +AL++I +L+ N
Sbjct: 413 DEEMVQISGDLDVVRHALLQITTRLKAN 440
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + PSR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIG 76
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
++++ +ERVI I SS N + DAE +AL ++ + DDD +E S
Sbjct: 77 ESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP CA + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD V AL+++ ++L +NP R
Sbjct: 192 ISGDSTVVRKALLQVSSRLHDNPSR 216
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+E+ A IK+ D+ ++ +I +S+K+ ++ VS NA + + D S
Sbjct: 304 QIRQESGAFIKV-DSSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA- 361
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ + T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E
Sbjct: 362 -------IPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--E 412
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +VQISGD+ V +AL++I +L+ N
Sbjct: 413 DEEMVQISGDLDVVRHALLQITTRLKAN 440
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 20/242 (8%)
Query: 23 HDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
HD +RR G+ + ++D ++R + P R+IG VIG+ G ++++R ETKA
Sbjct: 18 HDNGPNKRRNHGD---DREQFVIDSEDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAK 74
Query: 83 IKIADAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDDDSNSEASK 134
I+I + + EERV+ I ++ N VS A++AL ++ ++ +D +
Sbjct: 75 IRIGETVPGCEERVVTIYGPSDETNAVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQDDD 134
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
T +LL+ Q GC+IG G ++ +R +GA I IL + LP+CA + SD
Sbjct: 135 GG----QQVTAKLLVPSDQIGCVIGKGGSIVQNIRGETGAQIRILKDDHLPMCALS--SD 188
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA-QPFVEPTSGQPLL 253
+VQI+GD V AL +I ++L +NP R ++ A S + PA + P +G P++
Sbjct: 189 ELVQITGDAAVVKKALYQIASRLHDNPSRSQHLLTSA--VSGVYPAGGSLIGPGAGAPIV 246
Query: 254 QL 255
+
Sbjct: 247 GI 248
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ A +++ R++ P+ IG VIGK G I +IR+++ ATIK+ + +E +I
Sbjct: 272 SAPRDEASSKEFSVRLVCPTGNIGGVIGKGGMIINQIRQDSGATIKVDSSTIEGDECLIA 331
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ E ++ SE + +G + + T RLL+ ++ GCLI
Sbjct: 332 ISTKEF------FEETFSPTIEAAVRLQPRCSEKVERDSG-IISFTTRLLVPTTRIGCLI 384
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I +R + A I I++ LP A+E D +VQISGD+ +ALV + +LR
Sbjct: 385 GKGGSIITDMRRLTKANIRIISKENLPKI--ANEDDEMVQISGDLDVAKDALVHVLTRLR 442
Query: 219 EN 220
N
Sbjct: 443 AN 444
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 15/185 (8%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
A D +FR + P R+IG VIG+ G ++++R +TKA I+I DA+ +ERV+ I S
Sbjct: 41 ADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEET 100
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+ D++VS A++AL ++ ++ + E HV A +LL+ Q GC+I
Sbjct: 101 NHFDETDDLVSPAQDALFRVHQRVIA--EDAREDEDEERNHVTA---KLLVPSDQIGCVI 155
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ ++ +R+ +GA I IL ++LP CA + +D +VQISG+ V AL +I Q+R
Sbjct: 156 GKGGQIVQNIRSETGAQIRILKDDRLPPCALS--TDELVQISGEAAVVKKALFQIAAQIR 213
Query: 219 ENPPR 223
+NP R
Sbjct: 214 DNPSR 218
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A ++ R + P+ IG VIGK G I +IR+++ ATIK+ + ++ +IIIS
Sbjct: 270 PRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIIS 329
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+K+ E++ ++ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 330 TKEF------FEDSFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCLIGK 382
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G + ++R + A I IL+ + LP AS E D +VQISGD+ +ALV+ +LR N
Sbjct: 383 GGTIVTEMRRLTKANIRILSKDNLPKIAS--EDDEMVQISGDLDVAKDALVQALTRLRAN 440
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 17/217 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-- 105
+D ++R + P R+IG VIG+ G ++++R ETKA I+I + + EERV+ I S ++
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYSPSDETN 99
Query: 106 ------NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
N VS A++AL ++ ++ +D + T +LL+ Q GC+IG
Sbjct: 100 AVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQDDDGG----QQVTAKLLVPSDQIGCVIG 155
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G ++ +R+ +GA I IL + LPLCA + SD +VQI+GD V AL +I ++L +
Sbjct: 156 KGGSIVQNIRSETGAQIRILKDDHLPLCALS--SDELVQITGDASVVKKALCQIASRLHD 213
Query: 220 NPPRQVISISPAYNYSAIRPA-QPFVEPTSGQPLLQL 255
NP R ++ A + PA + P +G P++ +
Sbjct: 214 NPSRSQHLLTSA--VPGVYPAGGSLIGPGAGAPIVGI 248
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ A ++ R++ P+ IG VIGK G I +IR+E+ ATIK+ + +E +I
Sbjct: 272 SAPRDEASTKEFSVRLVCPTGNIGGVIGKGGMIINQIRQESGATIKVDSSTTEGDECLIA 331
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ E ++ SE + +G + + T RLL+ S+ GCLI
Sbjct: 332 ISTKEF------FEETFSPTIEAAVRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLI 384
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I ++R + A I I++ LP AS E D +VQISGD+ +ALV + +LR
Sbjct: 385 GKGGSIITEMRRLTKANIRIISKENLPKIAS--EDDEMVQISGDLDIAKDALVHVLTRLR 442
Query: 219 EN 220
N
Sbjct: 443 AN 444
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ S R D +FR + P ++IG VIG+ G ++++R +T++ I
Sbjct: 21 DNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKI 77
Query: 84 KIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+I +AI +ERVI I S D + V+S A++AL +I ++ DD+ SE S
Sbjct: 78 RIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVA-DDAQSEDSSE 136
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLC A SD
Sbjct: 137 GEQQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIIKDRNMPLC--ALNSDE 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPR 223
++QISG+V V AL +I ++L ENP R
Sbjct: 192 LIQISGEVLIVKKALHQIASRLHENPSR 219
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 17/214 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 271 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 330
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ SE + +G V+ T RLL+ S+ GC++G
Sbjct: 331 AREV------FEDAYSPTIEAVMRLQPKCSEKVERDSGLVSFTT-RLLVPSSRIGCILGK 383
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL LP AS + D +VQISG++ AL++I ++LR N
Sbjct: 384 GGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQISGELDVAKEALIQITSRLRAN 441
Query: 221 PPRQVISISPAYNYSAIRPAQPF--VEPTSGQPL 252
V A SA+ P P+ V P SG L
Sbjct: 442 ----VFDREGA--VSALMPVLPYVPVAPDSGDRL 469
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++R + P R+IG +IG+ G ++++R +TKA I+I + + +ERV+ + S
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 102 -KDNDNVVSDAENALQQIAALILKDD-----DSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+D+ + A +AL +I ++ +D D + + KV G + T +LL+A Q G
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLV--TAKLLVASDQIG 165
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ ++ +R+ +GA I IL ++LPLC A SD +VQISG++ V AL+++
Sbjct: 166 CVIGKGGQIVQNIRSETGAQIRILKDDRLPLC--ALNSDELVQISGEIAVVKKALIQVAA 223
Query: 216 QLRENPPR 223
+L +NP R
Sbjct: 224 RLHDNPSR 231
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R + P+ IG VIGK G I +IR+++ A IK+ + ++ +I IS+++ + D
Sbjct: 299 RFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARE---LFEDPF 355
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+A + A L+ SE + +G + + T RLL++ S+ GCLIG G I ++R +
Sbjct: 356 SATIEAAVLLQP---RCSEKVERDSG-ILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLT 411
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN---PPRQVISIS 229
A I IL+ LP A+ E D +VQISG++ +AL+++ +LR N R V S+
Sbjct: 412 KANIRILSKEDLPKIAT--EDDEMVQISGELDIAKDALLQVLTRLRANLFDKERSVSSLL 469
Query: 230 PAYNYSAIRPAQP 242
P A PA P
Sbjct: 470 PP--VLAYLPASP 480
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 28/221 (12%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
LP CA +SD +VQISG V AL EI +L ++P
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHP 228
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
GQ I ++R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVAGPPAIARGALTEIASRLRT- 447
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSGQPLLQLTM 257
R + S A N P P +PT P +LT+
Sbjct: 448 --RTLRDTSTANNPP---PFAPSDDPTVDMPSRKLTL 479
>gi|118482617|gb|ABK93228.1| unknown [Populus trichocarpa]
Length = 159
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS 235
I +LAPNQLPLCASA+ESDRVVQISGDVP VL AL EIG QLRENPP+QVISISP+YNYS
Sbjct: 2 ITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGCQLRENPPKQVISISPSYNYS 61
Query: 236 AIRPAQPF 243
A+ P Q +
Sbjct: 62 AV-PFQQY 68
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PSR+IG VIGK G+ ++ +REET+A I +AD I EERVIII S
Sbjct: 46 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 105
Query: 102 ---KDNDNVVSD----------AENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
KD+D+ A++AL ++ I+++D D ++E S + A
Sbjct: 106 TQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA---- 161
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
RLL+ + GCL+G G I++LR+ +GA I +L ++LP C A +D +VQISG
Sbjct: 162 ----RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPC--AMNTDEMVQISG 215
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 216 KPNVAKRALYEVSTLLHQNP 235
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 30 RREDGEIEGSDPKRRAK-AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R G I P + + + + +I+ + +IG VIGK G ++++++ET A+I + DA
Sbjct: 296 RMGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDA 355
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ERVI S+ N Q IL+ + SE S+ G + T RLL
Sbjct: 356 PTDSDERVIRASA------FEGLWNPRSQTIDAILQLQNKTSEFSE--KGTI---TTRLL 404
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ S+ GC++G G I ++R + A I ++
Sbjct: 405 VPSSKVGCILGQGGHVINEMRRRTQADIRVVG 436
>gi|302767378|ref|XP_002967109.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
gi|300165100|gb|EFJ31708.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
Length = 506
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 111/218 (50%), Gaps = 29/218 (13%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R+R G E + DV++RI+ P +IG VIGK G I+ +R ET A IK+AD
Sbjct: 25 RQRRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADG 84
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE------ASKVAAGHVAA 142
I +ERVI IS+ + +++ KD + N E AS+ A V A
Sbjct: 85 IPGSDERVIFISASPRERREGKPRGGSKEMD----KDKEQNGEESTPLPASQEALFKVFA 140
Query: 143 N-----------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
T RLL+ +Q GCL+G +G+ IE++R SGA I +L QLP
Sbjct: 141 RIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLP 200
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
C A+ +D +VQ++G++ V AL I +L +NPPR
Sbjct: 201 KC--AYHTDELVQLTGELALVKKALTTISTRLYDNPPR 236
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++ P+ +IG VIGK G I+ IREET A IKIADA+A EERVI I+S N+ +
Sbjct: 282 RLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITS--NEVLHEQVS 339
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
AL+ + L + D ++E A T R L+ + GCL+G G I +R ++
Sbjct: 340 PALEAVLQLQSRISDPSAEKD-------GAMTTRFLVPSANIGCLLGKKGSIIADMRRNT 392
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
A I +L+ LP C AHE D +VQ+ GD+ +A++EI +LR N
Sbjct: 393 RANIRVLSKEALPKC--AHEDDELVQVVGDITVARDAVIEIITRLRAN 438
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 45/250 (18%)
Query: 25 VSGKRRREDGEI-EGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRI 72
SGKR R + ++ E +D +R A ++RI+ PS IG VIGK G I
Sbjct: 5 YSGKRTRTEHDLAENNDRNKRRNSGTGREQTMPGADSTVYRILCPSNVIGSVIGKGGKVI 64
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------------DNDNVVSDAENALQQI 118
+ +R+ET++ I++ADA+ +ERVI+I S + + V A++ L ++
Sbjct: 65 KSMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEKDDDDDDNENEPVCPAQDGLLRV 124
Query: 119 AALIL-----KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
++I+ KD+D++ + + A RLL+A SQ G LIG G NI+KLR+ SG
Sbjct: 125 HSVIVQESSGKDNDADKKRPQDA---------RLLVANSQIGSLIGKGGNNIQKLRSESG 175
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---P 230
A I I ++LP CA + D +V ISGD AV AL + L ++PP++ I S P
Sbjct: 176 AQIQIPRKDELPGCAFSF--DELVVISGDAAAVKKALYAVSAFLFKHPPKEQIPWSVILP 233
Query: 231 AYNYSAIRPA 240
N S++ P+
Sbjct: 234 ETNQSSLPPS 243
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ +++ R++ P+ +IG VIGK G+ I+ +R +T A+I++ DA +ERVI++S+ +
Sbjct: 310 KKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATE 369
Query: 104 --NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+D V E A L+L+ S + A + R L+ GCL+G
Sbjct: 370 LADDRVSPTIE------AVLLLQGKTSGTTDKD------GAISTRFLVPSKHIGCLLGKG 417
Query: 162 GQNIEKLRNSS 172
G I ++R +S
Sbjct: 418 GNIISEMRANS 428
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 28/224 (12%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
LP CA +SD +VQISG V AL EI +L ++P ++
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKE 231
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
GQ I ++R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVAGPPAIARGALTEIASRLRTR 448
Query: 221 PPRQVISISPAYN 233
R + ++
Sbjct: 449 TLRDTSCWTNSWT 461
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 28/224 (12%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
LP CA +SD +VQISG V AL EI +L ++P ++
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKE 231
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
GQ I ++R +GA I + + P S D +VQ +G +
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQAAGQI 431
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++VPS ++G ++G+ G I ++R T A I++ S D +S +
Sbjct: 376 RLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV-------------YSKADKPKYLSFGD 422
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L Q A I +D S A+G ++ TI L I S ++G+ G N+ ++R S
Sbjct: 423 E-LVQAAGQIHGLEDYRGLPS--ASGRFSS-TIELRIPNSSLESIVGVGGVNLAEIRQIS 478
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDV 203
GA + + A A S+ VV+I G +
Sbjct: 479 GARLRLHE-------AHAGSSESVVEIQGTL 502
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 28/224 (12%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
LP CA +SD +VQISG V AL EI +L ++P ++
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKE 231
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
GQ I ++R +GA I + + P S D +VQ++
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVT 428
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 45/250 (18%)
Query: 25 VSGKRRREDGEI-EGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRI 72
SGKR R + ++ E +D +R A ++RI+ PS IG VIGK G I
Sbjct: 5 YSGKRTRTEHDLAENNDRNKRRNSGTGREQTMPGADSTVYRILCPSNVIGSVIGKGGKVI 64
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------------DNDNVVSDAENALQQI 118
+ +R+ET++ I++ADA+ +ERVI+I S + + V A++ L ++
Sbjct: 65 KSMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEKDDDDDDNENEPVCPAQDGLLRV 124
Query: 119 AALIL-----KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
++I+ KD+D++ + + A RLL+A SQ G LIG G NI+KLR+ SG
Sbjct: 125 HSVIVQESSGKDNDADKKRPQDA---------RLLVANSQIGSLIGKGGNNIQKLRSESG 175
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---P 230
A I I ++LP CA + D +V ISGD AV AL + L ++PP++ I S P
Sbjct: 176 AQIQIPRKDELPGCAFSF--DELVVISGDAAAVKKALYAVSAFLFKHPPKEQIPWSVILP 233
Query: 231 AYNYSAIRPA 240
N S++ P+
Sbjct: 234 ETNQSSLPPS 243
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 16/179 (8%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ +++ R++ P+ +IG VIGK G+ I+ +R +T A+I++ DA +ERVI++S+ +
Sbjct: 310 KKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATE 369
Query: 104 --NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+D V E A L+L+ S + A + R L+ GCL+G
Sbjct: 370 LADDRVSPTIE------AVLLLQGKTSGTTDKD------GAISTRFLVPSKHIGCLLGKG 417
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I I ++ P+C S E++ +VQ++G+ +AL++I +LREN
Sbjct: 418 GNIISEMRKQTRANIRIFRKDERPICVS--ENEELVQVTGEPGVAKDALIQILKRLREN 474
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 15/185 (8%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
A D +FR + P R+IG VIG+ G ++++R +TKA I+I DA+ +ERV+ I S
Sbjct: 41 ADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEET 100
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+ ++VS A++AL ++ ++ + E HV A +LL+ Q GC+I
Sbjct: 101 NHFDETGDLVSPAQDALFRVHQRVIA--EDAREDEDDERNHVTA---KLLVPSDQIGCVI 155
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ ++ +R+ +GA I IL ++LP CA ++ D +VQISG+ V AL +I Q+R
Sbjct: 156 GKGGQIVQNIRSETGAQIRILKDDRLPPCALSN--DELVQISGEAAVVKKALFQIAAQIR 213
Query: 219 ENPPR 223
+NP R
Sbjct: 214 DNPSR 218
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A ++ R + P+ IG VIGK G I +IR+++ ATIK+ + ++ +IIIS
Sbjct: 270 PRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIIS 329
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
K+ E++ ++ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 330 MKEF------FEDSFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCLIGK 382
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G + ++R + A I IL+ LP AS E D +VQISGD+ +ALV+ +LR N
Sbjct: 383 GGTIVTEMRRLTKANIRILSKENLPKIAS--EDDEMVQISGDLDVAKDALVQALTRLRAN 440
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 39/255 (15%)
Query: 27 GKRRREDGEIEGSD-PKRRAKA----------QDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
GKR + + + SD KRR +D +FR + P+ +IG +IG G +++
Sbjct: 9 GKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQL 68
Query: 76 REETKATIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD- 126
R ET + I+I++ I EERV+ I S +D +++S A++AL ++ +L +D
Sbjct: 69 RTETNSKIRISETIPGCEERVVTIYSGSEETNVSEDTGDLISPAQDALFRVHDRVLAEDL 128
Query: 127 --DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D + E + T+R+L+ Q GC+IG GQ I+ LR+ +GA I +L+ L
Sbjct: 129 RMDEDLEDHQQI-------TVRMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHL 181
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR---QVISISPAYNYSAIRPAQ 241
P C A SD ++QI+G+ V AL ++ +L +NP R Q++S SP S R
Sbjct: 182 PPC--ALNSDELLQITGEGAVVKKALYQVAARLHDNPSRSQHQLLS-SP----SIFRSGA 234
Query: 242 PFVEPTSGQPLLQLT 256
FV P +G ++ +T
Sbjct: 235 GFVNPHAGTQVMGVT 249
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 19/206 (9%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+ + ++ R++ P+ +G VIGK G I+++R+E+ A+IK+ A A ++ +I +S+K
Sbjct: 265 KSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK 324
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++ + DA LQ +SE ++ +G A T RLL+ S+ GCLIG
Sbjct: 325 EAFEDQSPTIDATMRLQP----------RSSEKTEKESGD-AILTTRLLVPSSRVGCLIG 373
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RNS+ A+I +L+ LP AS E D +VQI+GD NAL+++ +LR
Sbjct: 374 KGGSIINEMRNSTRASIRVLSKENLPKVAS--EDDEMVQITGDANVATNALLQVLMRLRA 431
Query: 220 NPPR---QVISISPAYNYSAIRPAQP 242
N + SP +Y + + P
Sbjct: 432 NTFEMEGSFPAFSPGLSYVPMSASMP 457
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 23/214 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
A +SD +VQISG V AL EI +L ++P
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHP 231
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIISS
Sbjct: 289 ETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIISS 345
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 346 NE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGEG 394
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 395 GKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 449
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 23/214 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
A +SD +VQISG V AL EI +L ++P
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHP 231
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIISS
Sbjct: 289 ETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIISS 345
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 346 NE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGEG 394
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 395 GKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 449
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 120/217 (55%), Gaps = 23/217 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
A +SD +VQISG V AL EI +L ++P ++
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHPRKE 234
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIIS
Sbjct: 288 TETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIIS 344
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 345 SNE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGE 393
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
G+ I +R +GA I + + P S D +VQ +G +
Sbjct: 394 GGKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQAAGQI 434
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++VPS ++G +IG+ G I +R T A I++ S D +S +
Sbjct: 379 RLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRV-------------YSKADKPKYLS-FD 424
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L Q A I +D S A G + TI L I S G ++G G N+ ++R S
Sbjct: 425 DELVQAAGQIHGREDYREPTS--ATGRFLS-TIELRIPNSSLGSIVGAGGVNLAEIRQVS 481
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVP------AVLNALVEIGNQLRENPPRQVI 226
GA + + A A S+ VV+I G + ++L + ++ ++ P +
Sbjct: 482 GARLRLHE-------AHAGSSESVVEIQGTLDQAKAAQSLLQGFISANSRQQQQPYSSRM 534
Query: 227 SISPAY 232
+ P++
Sbjct: 535 PLYPSW 540
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 30/216 (13%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I ++ + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 25 GKRKRLNSRHDDGTIS-------SEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 77
Query: 82 TIKIADAIARHEERVIIISSKDND------NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII + + N+ +D A++AL +I I D
Sbjct: 78 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 137
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 138 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 197
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
CA +SD +VQISG V AL EI +L ++P
Sbjct: 198 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHP 231
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 350 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 397
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 398 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 451
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 120/216 (55%), Gaps = 30/216 (13%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I S+P + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 25 GKRKRLNSRHDDGTIS-SEPI------ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 77
Query: 82 TIKIADAIARHEERVIIISSKDND------NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII + + N+ +D A++AL +I I D
Sbjct: 78 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 137
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 138 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 197
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
CA +SD +VQISG V AL EI +L ++P
Sbjct: 198 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHP 231
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 350 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 397
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 398 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 451
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 30/216 (13%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I S+P + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 32 GKRKRLNSRHDDGTIS-SEPI------ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 84
Query: 82 TIKIADAIARHEERVIII---SSKDND---NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII SS+ + N+ +D A++AL +I I D
Sbjct: 85 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 144
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 145 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 204
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
CA +SD +VQISG V AL EI +L ++P
Sbjct: 205 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHP 238
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 297 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 356
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 357 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 404
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 405 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 458
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 16/188 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ PS +IG +IGK IQ ++EET A I + DA+ EERVII+S+ ++ D+
Sbjct: 345 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 401
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+ A+ I L+DD + V RLL+ + GCL+G G I
Sbjct: 402 DLSPAQEAVFHIQDK-LRDDGGETSERVVT---------RLLVPSNHVGCLLGKGGNIIS 451
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++RNS+ A I +L QLPLC A ++D VVQ+ G++ +ALV+I ++LR N R+
Sbjct: 452 EMRNSTRAIIRVLDREQLPLC--ALDNDEVVQVLGEIRVARDALVQITSRLRANLYREKT 509
Query: 227 SISPAYNY 234
S Y Y
Sbjct: 510 DRSDDYGY 517
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 107/208 (51%), Gaps = 38/208 (18%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND------ 105
FRI+ P+ +IG VIGK G I+ +R++T A IKIADAI +ERVIII + D +
Sbjct: 62 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 121
Query: 106 ---------------------------NVVSDAENALQQIAALIL---KDDDSNSEASKV 135
+V A+ AL ++ + IL K +D ++ V
Sbjct: 122 YPAGSGGGSAAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDSV 181
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
R+L+ +Q GCL+G G+ IE++R +G+ I IL QLP+C A +D
Sbjct: 182 EEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVC--ALPTDE 239
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPR 223
VVQ+ GD P+V AL I +L +NPP+
Sbjct: 240 VVQVVGDRPSVKRALNAISTRLLDNPPK 267
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
+++ SD ++ V+ R++VP Q+G ++GK+G I+++REET + I+I + R +
Sbjct: 174 DLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRI---LPREQL 230
Query: 95 RVIIISSKDNDNVVSD---AENALQQIAALILKD 125
V + + + VV D + AL I+ +L +
Sbjct: 231 PVCALPTDEVVQVVGDRPSVKRALNAISTRLLDN 264
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
++ V+ R++VPS +G ++GK G+ I ++R T+A I++ D + + + DND
Sbjct: 425 SERVVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD------REQLPLCALDNDE 478
Query: 107 VV 108
VV
Sbjct: 479 VV 480
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 16/188 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ PS +IG +IGK IQ ++EET A I + DA+ EERVII+S+ ++ D+
Sbjct: 285 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 341
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+ A+ I L+DD + V RLL+ + GCL+G G I
Sbjct: 342 DLSPAQEAVFHIQDK-LRDDGGETSERVVT---------RLLVPSNHVGCLLGKGGNIIS 391
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++RNS+ A I +L QLPLC A ++D VVQ+ G++ +ALV+I ++LR N R+
Sbjct: 392 EMRNSTRAIIRVLDREQLPLC--ALDNDEVVQVLGEIRVARDALVQITSRLRANLYREKT 449
Query: 227 SISPAYNY 234
S Y Y
Sbjct: 450 DRSDDYGY 457
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 38/209 (18%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND----- 105
LFRI+ P+ +IG VIGK G I+ +R++T A IKIADAI +ERVIII + D +
Sbjct: 1 LFRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDE 60
Query: 106 ----------------------------NVVSDAENALQQIAALIL---KDDDSNSEASK 134
+V A+ AL ++ + IL K +D ++
Sbjct: 61 DYPAGSGGGAPAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDS 120
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V R+L+ +Q GCL+G G+ IE++R +G+ I IL QLP+C A +D
Sbjct: 121 VEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVC--ALPTD 178
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPR 223
VVQ+ GD P+V AL I +L +NPP+
Sbjct: 179 EVVQVVGDRPSVKRALNAISTRLLDNPPK 207
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+ + +++ SD ++ V+ R++VP Q+G ++GK+G I+++REET + I+I +
Sbjct: 110 KYEDDLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRI---LP 166
Query: 91 RHEERVIIISSKDNDNVVSD---AENALQQIAALILKD 125
R + V + + + VV D + AL I+ +L +
Sbjct: 167 REQLPVCALPTDEVVQVVGDRPSVKRALNAISTRLLDN 204
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
++ V+ R++VPS +G ++GK G+ I ++R T+A I++ D R + + + + DND
Sbjct: 365 SERVVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD---REQ---LPLCALDNDE 418
Query: 107 VV 108
VV
Sbjct: 419 VV 420
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R ET+A I+I
Sbjct: 21 GKRRNPGDDTYAPGP------DDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIG 74
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
+++ EERVI I SS N + DAE +AL ++ + D+ +E S+ +
Sbjct: 75 ESVPGCEERVITIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISP 134
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC++G G I+ +R+ +GA I +L+ + +P CA + D ++Q
Sbjct: 135 QV---TVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAIS--GDELLQ 189
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD+ V AL ++ ++L NP +
Sbjct: 190 ISGDMVVVKKALCQVSSRLHNNPSK 214
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D +
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E + +VQISG + +ALV+I +L+ N
Sbjct: 412 -EDEEMVQISGGLDVARHALVQIATRLKAN 440
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 116/200 (58%), Gaps = 7/200 (3%)
Query: 24 DVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
++S KR R+D EI +D K D +FR++VP++ +G +IG++G ++K+ EET++
Sbjct: 58 NLSQKRGRDD-EIGAGLTDKKWPGWPGDNVFRLLVPTQMVGGIIGRKGEFVKKMCEETRS 116
Query: 82 TIKIADAIARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDD-DSNSEASKVAAGH 139
IKI + + ER +++S+K+ VS A + + ++ I++ D E + G
Sbjct: 117 RIKILEGLRGTPERTVMVSAKEEPEAPVSPAMDGILRVHKRIIEGGPDGRGELGRAQQGG 176
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+ RLL+AG+QAG LIG G I+ ++ SGA + +LA LP CA A DR+V++
Sbjct: 177 SGTISTRLLVAGTQAGSLIGRQGATIKAIQEGSGAIVRVLAAEDLPFCALA--DDRLVEV 234
Query: 200 SGDVPAVLNALVEIGNQLRE 219
G+ +V A+ I + LR+
Sbjct: 235 QGEAGSVHKAVELIVSHLRK 254
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R ET+A I+I
Sbjct: 21 GKRRNPGDDTYAPGP------DDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIG 74
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
+++ EERVI I SS N + DAE +AL ++ + D+ +E S+ +
Sbjct: 75 ESVPGCEERVITIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISP 134
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC++G G I+ +R+ +GA I +L+ + +P CA + D ++Q
Sbjct: 135 QV---TVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAIS--GDELLQ 189
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD+ V AL ++ ++L NP +
Sbjct: 190 ISGDMVVVKKALCQVSSRLHNNPSK 214
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D +
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E + +VQISG + +ALV+I +L+ N
Sbjct: 412 -EDEEMVQISGGLDVARHALVQIATRLKAN 440
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 11/189 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS--- 101
A +D ++R + P R+ G +IG+ G ++IR ETKA ++I +A+ +ERV+ I S
Sbjct: 13 AGLEDTVYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSE 72
Query: 102 -----KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQA 154
+D+++ V A +AL ++ +I+ ++ N + T+R+L+ Q
Sbjct: 73 ETNRIEDDEDFVCPAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTVRMLVPSDQI 132
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG GQ I+KLRN + A I ++ N LP+CA A D ++QI GD AV AL ++
Sbjct: 133 GCLIGKGGQVIQKLRNDTNAQIRVINDN-LPICALALSHDELLQIIGDPSAVREALYQVA 191
Query: 215 NQLRENPPR 223
L +NP R
Sbjct: 192 FLLYDNPSR 200
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVI 97
S P+ A A+ I P+ +G VIGK G I + R+E+ ATIK+ ++ +I
Sbjct: 233 SAPRDAADARVFSICFICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDCII 292
Query: 98 IISSKDNDNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
IS+K+ S NA LQ + + D S+S A + R+LI SQ
Sbjct: 293 FISAKEFFEDQSPTVNAALRLQTRCSEKVGKDSSDS-----------AISTRVLIPSSQV 341
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG G I ++R+ + A I I +P A E++ +VQI+G + A + AL ++
Sbjct: 342 GCLIGKGGALISEMRSVTKANIRIFQGEDVPRI--ARENEEMVQITGSLDAAIKALTQVM 399
Query: 215 NQLREN 220
+LR N
Sbjct: 400 LRLRAN 405
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+ ++RI+ P ++IG V+G+ G ++ +REETKA I++AD I +ERVIII + N +
Sbjct: 42 ETIYRILCPVKKIGSVLGRGGDVVKALREETKAKIRVADPIPGADERVIIIFNYQNQPEL 101
Query: 109 SD-------------------AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+D A++AL +I I+ D+ + A + + T R+L+
Sbjct: 102 TDEAAETKFSDGLGNMKPHCFAQDALLKIHDKIVADEIHDGVAHEEKSESADDVTARILV 161
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
G+Q GCL+G G I++LR+ +GA I +L LP CA +SD +VQISG V A
Sbjct: 162 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLPSEDLPQCAL--KSDELVQISGAPSLVRKA 219
Query: 210 LVEIGNQLRENPPRQ 224
L EI +L ++P ++
Sbjct: 220 LYEISTRLHQHPRKE 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA E +II+S
Sbjct: 289 TETEEFSIRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASG---ESLIIVS 345
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ +E I ALIL D ++ + K ++ RL++ S+ GC++G
Sbjct: 346 SKE-----VPSEPISPAIEALILLHDKVSAPSEK------RHSSTRLVVPSSKVGCILGE 394
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
G+ I ++R +GA I + + P S D +VQ +G +
Sbjct: 395 GGKVITEMRRRTGAEIRVYSKADKPKYLSF--DDELVQTAGQI 435
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++VPS ++G ++G+ G I ++R T A I++ S D +S +
Sbjct: 380 RLVVPSSKVGCILGEGGKVITEMRRRTGAEIRV-------------YSKADKPKYLS-FD 425
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L Q A I +D S A G ++ TI L I S ++G+ G N+ ++R S
Sbjct: 426 DELVQTAGQIHGREDYRGLTS--ATGFLS--TIELRIPNSSLESIVGVGGVNLAEIRQIS 481
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDV 203
GA + + A A S+ VV+I G +
Sbjct: 482 GARLRLHE-------AHAGSSESVVEIQGTL 505
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 39/255 (15%)
Query: 27 GKRRREDGEIEGSD-PKRRAKA----------QDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
GKR + + + SD KRR +D +FR + P+ +IG +IG G +++
Sbjct: 9 GKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQL 68
Query: 76 REETKATIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD- 126
R ET + I+I++ I EERV+ I S +D +++S A++AL ++ +L +D
Sbjct: 69 RTETNSKIRISETIPGCEERVVTIYSGSEETNVSEDTGDLISPAQDALFRVHDRVLAEDL 128
Query: 127 --DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D + E + T+R+L+ Q GC+IG GQ I+ LR+ +GA I +L+ L
Sbjct: 129 RMDEDLEDHQQI-------TVRMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHL 181
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR---QVISISPAYNYSAIRPAQ 241
P C A SD ++QI+G+ V AL ++ +L +NP R Q++S SP S R
Sbjct: 182 PPC--ALNSDELLQITGEGAVVKKALYQVAARLHDNPSRSQHQLLS-SP----SIFRSGA 234
Query: 242 PFVEPTSGQPLLQLT 256
V P +G ++ +T
Sbjct: 235 GLVNPHAGTQVMGVT 249
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 19/206 (9%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
R + ++ R++ P+ +G VIGK G I+++R+E+ A+IK+ A A ++ +I +S+K
Sbjct: 265 RSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK 324
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++ + DA LQ +SE ++ +G A T RLL+ S+ GCLIG
Sbjct: 325 EAFEDQSPTIDATMRLQP----------RSSEKTEKESGD-AILTTRLLVPSSRVGCLIG 373
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RNS+ A+I +L+ LP AS E D +VQI+GD NAL+++ +LR
Sbjct: 374 KGGSIINEMRNSTRASIRVLSKENLPKVAS--EDDEMVQITGDANVAANALLQVLMRLRA 431
Query: 220 NPPRQ---VISISPAYNYSAIRPAQP 242
N + SP +Y + + P
Sbjct: 432 NTFEMEGSFPAFSPGLSYVPMSASMP 457
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIG 76
Query: 87 DAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERVI I S +D ++ V A++AL ++ ++ DD E ++
Sbjct: 77 ESVPGCDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLIADDGPGDEENEEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +G+ I +L+ +LP C + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNERLPACGIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD V AL+++ ++L +NP R
Sbjct: 192 ISGDPLVVRKALLQVSSRLHDNPSR 216
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 15/183 (8%)
Query: 41 PKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
P+R + A+D R++ + +G VIGK G I++IR+E+ A IK+ D+ + ++ +I +
Sbjct: 270 PRREDSSAKDFSLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKV-DSSSAEDDCIITV 328
Query: 100 SSKD--NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
S+K+ D V + ++ K D + E S T RLL++ SQ GCL
Sbjct: 329 SAKEFFEDPVSPTIDATVRLQPKCSEKTDPESGEPSY---------TTRLLVSTSQIGCL 379
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++R +S A I IL+ +P AS E + +VQISGD+ +ALV+I +L
Sbjct: 380 IGKGGSIITEIRRTSRANIRILSKENVPKVAS--EDEEMVQISGDLEVARHALVQITTRL 437
Query: 218 REN 220
+ N
Sbjct: 438 KAN 440
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 26/225 (11%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCTSRKIGSIIGRGGEIAKQLRSDTQAKIRIG 76
Query: 87 DAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERVI I S +D ++ V A++AL ++ + DD ++ ++ + G
Sbjct: 77 ESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLATDDGPVNKENEESLG 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +G+ I +L+ LPLCA++ D ++
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNEHLPLCATS--GDELLL 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
I+GD V AL+++ ++L NP R ++ + N QPF
Sbjct: 192 ITGDPMVVRKALLQVSSRLHGNPSRSQHLLASSLN-------QPF 229
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+E+ A IK+ D+ + ++ +I +S+K+ ++ VS +A ++ + D+ S
Sbjct: 304 QIRQESGAFIKV-DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAESGE 362
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ T RLL++ S+ GCLIG G I ++R +S A I I++ +P AS E
Sbjct: 363 --------PSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDE 414
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
+V ISGD+ +AL++I +L+ N
Sbjct: 415 --EMVLISGDLDFARHALLQITTRLKAN 440
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++R + SR+IG +IG+ G +++R +T+A I+I +++ +ERVI I S
Sbjct: 39 DTVYRYLCASRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVITIFSSSRETNT 98
Query: 102 -KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+D ++ V A++AL ++ ++ DD E ++ V +RLL+ Q GC+IG
Sbjct: 99 VEDTEDKVCPAQDALFRVHEKLITDDGPGDEENEEGLAQV---IVRLLVPSDQIGCIIGK 155
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I+ +R+ +G+ I +L+ LP CA + D ++QISGD V AL+++ ++L +N
Sbjct: 156 GGHIIQGIRSDTGSHIRVLSTEHLPACAIS--GDELLQISGDPLVVRKALLQVSSRLHDN 213
Query: 221 PPR 223
P R
Sbjct: 214 PSR 216
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 10/147 (6%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
+IR+E+ A IK+ D+ + ++ +I +S+K+ E+ + ++ SE +
Sbjct: 304 QIRQESGAFIKV-DSSSAEDDCIITVSAKEF------FEDPISPTIDATVRLQPRCSEKT 356
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+G + T RLL++ S+ GCLIG G I ++R +S A I IL+ +P AS E
Sbjct: 357 DPESGE-PSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAS--ED 413
Query: 194 DRVVQISGDVPAVLNALVEIGNQLREN 220
+ +VQISGD+ +ALV+I +L+ N
Sbjct: 414 EEMVQISGDLDVAKHALVQITTRLKAN 440
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 25/198 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 107 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 166
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 167 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 218
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I IL LP CA + SD ++QI GD V AL ++ +
Sbjct: 219 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQIIGDASVVRKALHQLAS 276
Query: 216 QLRENPPRQ---VISISP 230
+L ENP R ++S SP
Sbjct: 277 RLHENPSRSQHLLLSSSP 294
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 315 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKE- 373
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
D + AAL L+ S +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 374 --FFEDPSPTID--AALRLQPRCSE-KAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 426
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 427 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 480
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 19/211 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 291 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 348
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 349 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 400
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 401 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 458
Query: 214 GNQLREN-PPRQVISISPAYNYSAIRPAQPF 243
+LR+N P + ++ + + SA+ P+
Sbjct: 459 TGRLRDNLFPSKTLNGAGIRSSSAMNEISPY 489
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A V FR++ + +IG VIGK G +++++ +T A I++ D+ + + RVI++ + + N
Sbjct: 48 AGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVN 107
Query: 107 VVSDAENALQQIAA-----LILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIG 159
+ + +++ A +L+ + E + V G + RLL SQ G +IG
Sbjct: 108 RRIALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIG 167
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ +EK+R SG+ I +L +LP CA++ +D +V+I GDV AV ALV + +L++
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAAS--TDEMVEIEGDVLAVKKALVAVSRRLQD 225
Query: 220 NP 221
P
Sbjct: 226 CP 227
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 18/187 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 212 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 269
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 270 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 321
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 322 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 379
Query: 214 GNQLREN 220
+LR+N
Sbjct: 380 TGRLRDN 386
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 25/198 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 152
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I IL LP CA + SD ++QI GD V AL ++ +
Sbjct: 153 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQIIGDASVVRKALHQLAS 210
Query: 216 QLRENPPRQ---VISISP 230
+L ENP R ++S SP
Sbjct: 211 RLHENPSRSQHLLLSSSP 228
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 249 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEF 308
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
E+ I A + + +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 309 ------FEDPSPTIDAALRLQPRCSEKAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 360
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 361 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 414
>gi|302754958|ref|XP_002960903.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
gi|300171842|gb|EFJ38442.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
Length = 502
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++ P+ +IG VIGK G I+ IREET A IKIADA+A EERVI I+S N+ +
Sbjct: 278 RLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITS--NEVLHEQVS 335
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
AL+ + L + D ++E A T R L+ + GCL+G G I +R ++
Sbjct: 336 PALEAVLQLQSRISDPSAEKD-------GAMTTRFLVPSANIGCLLGKKGSIIADMRRNT 388
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
A I +L+ LP C AHE D +VQ+ GD+ +A++EI +LR N
Sbjct: 389 RANIRVLSKEALPKC--AHEDDELVQVVGDITVARDAVIEIITRLRAN 434
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 33/218 (15%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R+R G E + DV++RI+ P +IG VIGK G I+ +R ET A IK+AD
Sbjct: 25 RQRRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADG 84
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE------ASKVAAGHVAA 142
I +ERVI IS ++ E + + + KD + N E AS+ A V A
Sbjct: 85 IPGSDERVIFISPRERR------EGKPRGGSKEMDKDKEQNGEESTPLPASQEALFKVFA 138
Query: 143 N-----------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
T RLL+ +Q GCL+G +G+ IE++R SGA I +L QLP
Sbjct: 139 RIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLP 198
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
C A+ +D + ++G++ V AL I +L +NPPR
Sbjct: 199 KC--AYHTDEL--LTGELALVKKALTTISTRLYDNPPR 232
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 18/187 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 228 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 285
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 286 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 337
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 338 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 395
Query: 214 GNQLREN 220
+LR+N
Sbjct: 396 TGRLRDN 402
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q+V FRI+ + ++G VIGK G+ ++ ++ ET ATI I A+A E+R+I I++ +
Sbjct: 313 KALKQEVTFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECEDRLITIAASE 372
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A+ A + + ++ S + G + T+RL++ SQ GCLIG G
Sbjct: 373 NPESRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIV--TVRLVVPSSQVGCLIGKGG 430
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ ++R ++GA I I+ +Q+P CAS ++D+VVQISG+ +V +AL +LR+N
Sbjct: 431 VIVSEMRKATGANIRIIGTDQVPKCAS--DNDQVVQISGEFSSVQDALYNAMGRLRDN 486
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 24/187 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------SSK- 102
V FR++ + +IG VIGK G I+ +++ T A I+I DA +R+I++ S K
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKI 104
Query: 103 --DNDNV--VSDAENALQQIAALILKD---DDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
N+ V VS A+ AL ++ IL+ D S +V + RL+ +QAG
Sbjct: 105 LLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDVGDRVM-------SCRLVADAAQAG 157
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG G+ +E+++ +G I +L + LPLCASA SD +++I G V +V ALV +
Sbjct: 158 SVIGKGGKVVERIKKETGCKIRVLT-DDLPLCASA--SDEIIEIEGRVSSVKKALVAVSQ 214
Query: 216 QLRENPP 222
+L++ P
Sbjct: 215 RLQDCHP 221
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 108/173 (62%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ +T A++K+ DA+A +ERVI+IS+++N +
Sbjct: 251 QEIVFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVIDAVADSDERVIVISARENSEM 310
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 311 MHSPAQDAVLRVYSRI-------SEASMDKSSAVPA---RLLVPSQHIGCLLGKGGSIIA 360
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++RN +GA+I I Q+P C A +D +VQ++G+ ++ +AL+ I ++R+
Sbjct: 361 EMRNVTGASIRIFGNEQIPRC--AQRNDELVQVTGNFQSIQDALLHITGRIRD 411
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI-VILAPNQ 183
DD E K G V R+L AG Q GC++G G+ +E++R SGA I V +Q
Sbjct: 97 DDAGEGEEEKEVTGVVGC---RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKDQ 153
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+P CA + D ++ ISG A AL+ + L++NP
Sbjct: 154 VPPCAL--QGDELIHISGSFSAARKALLLVSTCLQDNP 189
>gi|148907101|gb|ABR16694.1| unknown [Picea sitchensis]
Length = 490
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Query: 21 PRHDVSGKRRREDGEI---EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
PR+ G++R + EI G++ K + +FR++VPS+++G +IG++G ++K+ E
Sbjct: 18 PRNANPGQKRGREEEIGTGTGAEKKWPGWPGENVFRMLVPSQKVGGIIGRKGEFVKKMCE 77
Query: 78 ETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVA 136
ET++ IKI D ++ ERV+++S+K+ D +S A + + ++ I++ D + A
Sbjct: 78 ETRSRIKILDGLSGTPERVVMVSAKEEPDATISPAMDGILKVHKRIIEGIDEVGRTQQAA 137
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
G RLL+AG Q+G LIG G I+ ++ +SG ++ +P CA A D+V
Sbjct: 138 GG---PTITRLLLAGIQSGSLIGKQGATIKSIQENSGVAAKVVGSEDIPYCALA--DDKV 192
Query: 197 VQISGDVPAVLNALVEIGNQLRE 219
++I G+ V AL + + LR+
Sbjct: 193 LEIQGEPANVHKALELVVSHLRK 215
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 7/192 (3%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+++E ++EG D + D +FRI+VP++++G +IG++G I+K+ E++KA IKI D
Sbjct: 93 KQQESLQVEGEDKRWPGWPGDSVFRILVPAQKVGAIIGRKGEFIKKMCEQSKARIKILDG 152
Query: 89 IARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
ER +IIS+KD D +S A + L +I I D S+ E + G RL
Sbjct: 153 PPGVTERAVIISAKDEPDEPISPAMDGLLRIHKRIT--DGSDGEFGQPQRGASNVGPTRL 210
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAG LIG G I+ +++SS + + I+ N P+ A DRVV+I G+ V
Sbjct: 211 LVPASQAGSLIGKQGATIKSIQDSSKSVVRIVE-NVPPV---ALNDDRVVEIQGEPLGVH 266
Query: 208 NALVEIGNQLRE 219
A+ I N LR+
Sbjct: 267 KAVELIANHLRK 278
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 23/213 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDV--------LFRIIVPSRQIGKVIGKEGHRIQKIREE 78
GKR+ + E GS KRR D ++R + SR+IG +IG+ G +++R E
Sbjct: 9 GKRQSDFTENGGS--KRRNPGDDTYAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTE 66
Query: 79 TKATIKIADAIARHEERVI-IISSKDNDNVVSDAEN-------ALQQIAALILKDDDSNS 130
T+A I+I +++ +ERV+ I S+ N + AE+ AL ++ + D+ +
Sbjct: 67 TQAKIRIGESVPGCDERVVTIFSTSRKTNTIDGAEDEVCPAQDALFRVHERLASDEGLGN 126
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S+ + V T+RLL+ Q GC+IG GQ I+ +R+ +GA I +L+ + +P CA +
Sbjct: 127 EDSEEISPQV---TVRLLVPSDQIGCIIGKGGQIIQGIRSETGAQIRVLSNDHIPACAIS 183
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
D ++QISGD V AL ++ ++L NP +
Sbjct: 184 --GDELLQISGDTVVVRKALHQVSSRLHNNPSK 214
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D ++
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQPRCSEKSDLESA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A + IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANVRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E D +VQI+G + NALV+I +L+ N
Sbjct: 412 -EDDEMVQITGGLDVARNALVQIATRLKAN 440
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 66/243 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-- 107
V+FR++ P+ + G VIGK G I +IR+ET +++ + ++ +ERV++I+ D D
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 108 ----------------VSDAE-----------------------NALQQIAALILK---- 124
VSD + +++Q+ L+ +
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 125 --------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
D+DSN + V +RLL+ SQ GCL+G G I+++ SGA I
Sbjct: 165 GESETNGGDEDSNKSPTFV---------VRLLVLSSQVGCLLGKGGSVIKQMSAESGAQI 215
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISISPAYNY 234
IL ++LPLCAS SD +VQI+G++ A AL I QL ENPPR ++S +P +
Sbjct: 216 RILPRDKLPLCASP--SDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSS 273
Query: 235 SAI 237
S +
Sbjct: 274 SHL 276
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 330 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 390 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 440
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 441 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 498
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 499 DAFSVNHPSNPAFTDQVPPF 518
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 66/243 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-- 107
V+FR++ P+ + G VIGK G I +IR+ET +++ + ++ +ERV++I+ D D
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 108 ----------------VSDAE-----------------------NALQQIAALILK---- 124
VSD + +++Q+ L+ +
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 125 --------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
D+DSN + V +RLL+ SQ GCL+G G I+++ SGA I
Sbjct: 165 GESETNGGDEDSNKSPTFV---------VRLLVLSSQVGCLLGKGGSVIKQMSAESGAQI 215
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISISPAYNY 234
IL ++LPLCAS SD +VQI+G++ A AL I QL ENPPR ++S +P +
Sbjct: 216 RILPRDKLPLCASP--SDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSS 273
Query: 235 SAI 237
S +
Sbjct: 274 SHL 276
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 330 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 390 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 440
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 441 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 498
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 499 DAFSVNHPSNPAFTDQVPPF 518
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 109/172 (63%), Gaps = 4/172 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP +++G +IG++G ++++ EET++ IKI + + ER++++S++ D +
Sbjct: 12 DNVFRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAA 71
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A L ++ +++ + S +++A G ++ RLL+A +QAG LIG G I+
Sbjct: 72 ISPAMEGLLRVHRRVIEGAEPESVDAEIAPGGAPVSS-RLLVAATQAGSLIGRQGATIKS 130
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++++SGA + +L +LPLCA A DRVV++ GD V A+ + + LR+
Sbjct: 131 IQDTSGANVRVLPAEELPLCALA--DDRVVEVQGDPRNVQRAMELVVSHLRK 180
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 104/156 (66%), Gaps = 5/156 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP +++G +IG++G ++++ EET++ IKI + + ER++++S++ D +
Sbjct: 9 DNVFRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAA 68
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A L ++ +++ + S +++A G ++ RLL+A +QAG LIG G I+
Sbjct: 69 ISPAMEGLLRVHRRVIEGAEPESADAEIAPGGAPVSS-RLLVAATQAGSLIGRQGATIKS 127
Query: 168 LRNSSGATIVIL-APNQLPLCASAHESDRVVQISGD 202
+++SSGAT+ +L A +LPLCA A DRVV+++G+
Sbjct: 128 IQDSSGATVRVLPAAEELPLCALA--DDRVVEVTGE 161
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G VIGK G I+ ++ ET A++K+ D +A +ER+I+IS+++N +
Sbjct: 155 QEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEM 214
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S +++AL ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 215 MRSPSQDALLRVYSKI-------SEASMDKSSSVPA---RLLVPAQHIGCLLGKGGSIIA 264
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 265 EMRKLTGASIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 315
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 17/221 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDN 106
+D ++R + P R+IG +IGK G +++R ++K+ I+I++A+ ++ERV+ I SS + N
Sbjct: 8 EDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERVVTIFSSSEETN 67
Query: 107 VVSD-------AENALQQIAALILKDDDSNSEASKVAA----GHVAANTIRLLIAGSQAG 155
+ D A++AL + ++ +D +N+ A++ G V T+R+L+ Q G
Sbjct: 68 LFEDTGEYVCPAQDALFMVHDRVIAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPTDQIG 127
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I I LP A + +D ++ I G+ V AL ++
Sbjct: 128 CVIGKGGQVIQNIRSETRAQIRITKDEHLPPLALS--TDELLLIHGEPSVVRKALYQVAT 185
Query: 216 QLRENPPR-QVISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
+L ENP R Q + +S + N + FV +G PLL L
Sbjct: 186 RLHENPSRSQHLLLSSSAN--TYQSGGMFVTANAGAPLLGL 224
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 10/181 (5%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D + A A+D R++ P IG VIGK G I++IR+E++A+IK+ + A + +I I
Sbjct: 239 DQRDEASAKDFSLRLVCPIANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGNDCIIFI 298
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
S+K+ S NA L+ SE ++ +G + T RLL+ SQ GCL+G
Sbjct: 299 SAKEFFEDQSPTMNA-------ALRMQPRCSEKTEKESGD-SVITTRLLVGRSQIGCLMG 350
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RN + A I I++ + LP A E D +VQI+G + NAL+++ +L+
Sbjct: 351 KGGAIISEMRNLTRANIRIISEDNLPKVAG--EDDEMVQITGSLEVASNALLQVILRLKA 408
Query: 220 N 220
N
Sbjct: 409 N 409
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
R + Q V R++VP+ QIG VIGK G IQ IR ET+A I+I
Sbjct: 108 RFGEVQQVTVRMLVPTDQIGCVIGKGGQVIQNIRSETRAQIRIT 151
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G VIGK G I+ ++ ET A++K+ D +A +ER+I+IS+++N +
Sbjct: 250 QEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEM 309
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S +++AL ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 310 MRSPSQDALLRVYSKI-------SEASMDKSSSVPA---RLLVPAQHIGCLLGKGGSIIA 359
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 360 EMRKLTGASIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 410
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDV 203
R+L AG Q GC++G G+ +E++R SGA I V Q+P CA + D ++ ISG
Sbjct: 112 CRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCAL--QGDELIHISGSF 169
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSG 249
A AL+ + L++N PR S P+ +PF P SG
Sbjct: 170 SAARKALLLVSTCLQDN-PRPDTSNFPS--------GRPFGPPGSG 206
>gi|356507955|ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 678
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 125/283 (44%), Gaps = 72/283 (25%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR+ G D V+FR++ + +IG VIGK G I +IR ET +KI
Sbjct: 15 GKRRKSSGGFSPLD----VSPGSVVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKIE 70
Query: 87 DAIARHEERVIIISS----------------KDNDNVVSDAENALQQIAALILKDDDSNS 130
+A+ +ERVI IS DND+V S+ ++ ++ + ++D
Sbjct: 71 EAVPGCDERVITISGSDKEAEEYTAEQGKEVNDNDDVGSEGKDGEEKNGSDGNGNEDKEE 130
Query: 131 ------EASKVAAGHVA------------------------------ANTIRLLIAGSQA 154
E SK G+ A + +RLLI +Q
Sbjct: 131 KDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKSSSFFLRLLILTAQV 190
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GC++G G I+++ SGA I IL +++P+CASA D +VQISG V V AL +
Sbjct: 191 GCVLGKGGSVIKRMAAESGAQIRILPKDKVPVCASAF--DEIVQISGSVEVVRKALQSVS 248
Query: 215 NQLRENPPRQVISIS--------------PAYNYSAIRPAQPF 243
QL ENPPR S+S P +N+S +PF
Sbjct: 249 QQLLENPPRDHESLSAKSTGPSSHSFGQFPPHNHSFAAQGEPF 291
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 112/199 (56%), Gaps = 16/199 (8%)
Query: 43 RRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
R Q++L FR++ P ++G +IGK G I+ +++ET + IK+ +A E+ VI+IS
Sbjct: 319 RTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETVSEIKVLEAPPDSEDCVIVISG 378
Query: 102 KDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ ++ VS + A+ ++ I K ++ + +A R L++ +Q GCL+G
Sbjct: 379 PAHPEDRVSPVQEAVFRVQTRIAKPIPDANDHTMLA---------RFLVSSNQIGCLLGK 429
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R SGA I IL +++P CAS E + V+Q++G++ AV AL++I +L+ +
Sbjct: 430 GGSIITEMRKKSGAHIRILGKDKVPKCAS--EDEEVIQVNGEIEAVHEALLQITTRLKHH 487
Query: 221 PPRQVISISPAYNYSAIRP 239
R P+ NY + P
Sbjct: 488 FFRDSY---PSVNYPSNSP 503
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 39/212 (18%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 52 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 110
Query: 100 SSKDNDNVVSDAE-NALQQIAAL-------ILKDDDSNSEASKVAA-------------- 137
SK + + AE N ++ A L + DDD +S A +
Sbjct: 111 KSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 170
Query: 138 --------GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 171 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 229
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
D ++QI+G PAV AL+ + + L++NP
Sbjct: 230 --PGDELIQITGTFPAVRKALLLVSSCLQDNP 259
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V+F+++ ++G +IGK G I+ ++ ET A+IKIADA +ERV++IS+++N +
Sbjct: 326 EEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKIADAAPDSDERVVVISARENLEQ 385
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++A+ ++ I +++ AA RLL+ Q GCL+G G I
Sbjct: 386 KHSPAQDAVIRVHCRI----------AEIGFEPGAAVVARLLVHSQQIGCLLGKGGIIIS 435
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R ++GA+I I A Q+P C S ++D +VQ+ G + +V +AL I +++RE
Sbjct: 436 EMRRATGASIRIFAKEQVPKCGS--QNDELVQVIGSLQSVQDALFRITSRIRET 487
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 52/181 (28%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-------------------IADAIA 90
V R++ PS Q+G V+G+ G ++KIR+E+ A I+ I
Sbjct: 183 VCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQITGTFP 242
Query: 91 RHEERVIIISSKDNDNVVSDAENAL----------------------QQIAALILKDDDS 128
+ ++++SS DN +DA N+ Q+ L D
Sbjct: 243 AVRKALLLVSSCLQDNPRADATNSAAAKPTGGMLHGNGMPGQLDSFPQRGYGSSLHGPDY 302
Query: 129 NSEASKVAAG--HVAAN---------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+S G ++ AN +LL + G LIG G I L++ +GA+I
Sbjct: 303 HSRGYSSMPGPENIGANHRMVLEEEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIK 362
Query: 178 I 178
I
Sbjct: 363 I 363
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 25/216 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ I++++N ++
Sbjct: 248 QEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDM 307
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + H A RLL+ GCL+G G I
Sbjct: 308 LHSPAQDAVVRVYSRI-------SEASIDRSSHTPA---RLLVPSQHIGCLLGKGGSIIS 357
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE------- 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 358 EMRKITGANIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPH 415
Query: 220 ----NPPRQVISISPAYNYSAIRPAQPFVEPTSGQP 251
PP + P + +P P + P+ G P
Sbjct: 416 PSGGMPPYPPVGNIPVHQSRQEQPP-PHLHPSGGMP 450
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDS--NSEASKVAAGHVAANTIRLLIA 150
+E V++IS D + A A + + ++ D++ E + G V R+L A
Sbjct: 63 DEAVLVISGPDTP---AAAVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGC---RMLAA 116
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G Q GC++G G+ +E++R GA I + N+ L A D ++ ISG V AL
Sbjct: 117 GWQVGCVLGKGGKTVERMRQECGAQIRVFR-NREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 211 VEIGNQLRENP 221
+ + L++NP
Sbjct: 176 LAVSTCLQDNP 186
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 131/248 (52%), Gaps = 27/248 (10%)
Query: 24 DVSGKRRREDGEIEGSDP--KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
D G +RR G+ DP + +D ++R + P R+IG +IGK G +++R ++K+
Sbjct: 18 DYGGGKRRNPGD----DPSDQNTITNEDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKS 73
Query: 82 TIKIADAIARHEERVI-IISSKDNDNVVSD-------AENALQQIAALILKDDDSNSEAS 133
I+I++A+ ++ER++ I SS + N+ + A++AL + ++ +D +N+ A
Sbjct: 74 NIRISEAMPGYDERIVTIYSSSEETNLFGETGEYVCPAQDALFMVHDRVIAEDLNNAAAE 133
Query: 134 KVAA----GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ G V T+R+L+ Q GC+IG GQ I+ +R+ + A I I + LP A
Sbjct: 134 EEEGEDNFGEVQQVTVRMLVPADQIGCVIGKGGQVIQNIRSETCAQIRITKDDHLPPLAL 193
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISISPAYNYSAIRPAQPFVEPT 247
+ D ++ I G+ AV AL ++ +L ENP R +I S A + + FV
Sbjct: 194 S--IDELLLIHGEPSAVRKALYQVATRLHENPSRSQHLILSSSANVHGGV-----FVTAN 246
Query: 248 SGQPLLQL 255
+G P+L L
Sbjct: 247 AGAPVLGL 254
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D + + ++ R++ P+ IG VIGK G I++IR+E++A+IK+ + A ++ +I I
Sbjct: 269 DQRDESSTKEFSLRLVCPTANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGDDCIIFI 328
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
S+K+ S NA ++ + S S + T RLL+ SQ GCL+G
Sbjct: 329 SAKEFFEDQSPTMNAALRLQPRCSDKTEKESGDSVI--------TTRLLVGRSQIGCLMG 380
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV----------VQISGDVPAVLNA 209
G I ++RN + A I I++ + LP A E D + VQI+G + NA
Sbjct: 381 KGGAIISEMRNQTRANIRIISEDNLPKVAV--EDDEMVQVNVYNFNSVQITGSLEVASNA 438
Query: 210 LVEIGNQLREN 220
L+++ +L+ N
Sbjct: 439 LLQVILRLKAN 449
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 25/216 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ I++++N ++
Sbjct: 248 QEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDM 307
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + H A RLL+ GCL+G G I
Sbjct: 308 LHSPAQDAVVRVYSRI-------SEASIDRSSHTPA---RLLVPSQHIGCLLGKGGSIIS 357
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE------- 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 358 EMRKITGANIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPH 415
Query: 220 ----NPPRQVISISPAYNYSAIRPAQPFVEPTSGQP 251
PP + P + +P P + P+ G P
Sbjct: 416 PSGGMPPYPPVGNIPVHQSRQEQPP-PHLHPSGGMP 450
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDS--NSEASKVAAGHVAANTIRLLIA 150
+E V++IS D + A A + + ++ D++ E + G V R+L A
Sbjct: 63 DEAVLVISGPDTP---AAAVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGC---RMLAA 116
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G Q GC++G G+ +E++R GA I + N+ L A D ++ ISG V AL
Sbjct: 117 GWQVGCVLGKGGKTVERMRQECGAQIRVFR-NREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 211 VEIGNQLRENP 221
+ + L++NP
Sbjct: 176 LAVSTCLQDNP 186
>gi|356546743|ref|XP_003541782.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 663
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q+V FRI+ + ++G VIGK G+ ++ ++ ET ATI I +A E+R+I I++ +
Sbjct: 305 KALQQEVSFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPLVAECEDRLITIAASE 364
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A+ A + + ++ S + G T+RL++ SQ GCLIG G
Sbjct: 365 NPESRYSPAQKAAVLVFSRSIEVGFEKELDSGLNKGSTV--TVRLVVPSSQVGCLIGKGG 422
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ ++R ++GA I I+ +Q+P CAS ++D+VVQISG+ +V +AL +LR+N
Sbjct: 423 VIVSEIRKATGANIRIIGTDQVPKCAS--DNDQVVQISGEFSSVQDALYNATGRLRDN 478
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------SSK- 102
V FR++ + +IG VIGK G I+ +++ T A I+I DA +RVI++ S K
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQESPDRVILVIADAALSCKV 104
Query: 103 --DNDNV--VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
N+ V VS A+ AL ++ IL + +E V G + RL+ +QAG +I
Sbjct: 105 LLRNEEVVEVSKAQEALLKVFDRIL---EVAAEMEGVDVGD-RVMSCRLVADSAQAGSVI 160
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +E+++ +G I +L + LPLCASA SD +++I G V +V ALV + +L+
Sbjct: 161 GKGGKVVERIKKETGCKIRVLT-DDLPLCASA--SDEMIEIEGRVSSVKKALVAVSQRLQ 217
Query: 219 ENP 221
+ P
Sbjct: 218 DCP 220
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 15/193 (7%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E D + ++++FRI+ P+++IG VIG+ G I+ ++++ A IKI DA+ +E
Sbjct: 7 EYHARDYEPSFSGEELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDE 66
Query: 95 RVIIISSKD--NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
R+IIIS+ + DN +S A+ AL I + I+ D + V T +LLI +
Sbjct: 67 RIIIISANEVLEDN-LSPAQEALLHIQSQIV---DLGPDKDGVI-------TTKLLIPSN 115
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q GCL+G G I ++R + A I IL LP C A +SD +VQI GD+ A ALV+
Sbjct: 116 QTGCLLGKGGAIISEMRKQTRANIRILPREDLPPC--ALDSDEMVQIVGDIRAARAALVQ 173
Query: 213 IGNQLRENPPRQV 225
+ ++LR R++
Sbjct: 174 VTSRLRSFIHREI 186
>gi|356518382|ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 676
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 124/283 (43%), Gaps = 74/283 (26%)
Query: 27 GKRRREDGEIE--GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
GKRRR G G P V+FR++ + +IG VIGK G I +IR+ET ++
Sbjct: 15 GKRRRSSGGFSSLGVSPG------SVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLR 68
Query: 85 IADAIARHEERVIIISSKDN----DNV-----VSDAENALQQIAALILKDD--------- 126
I +A+ +ERVI IS + DN V+D ++ + KDD
Sbjct: 69 IEEAVPGCDERVITISGSEKETEEDNTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKRE 128
Query: 127 -------DSNSEASKVA-------------------------AGHVAANTIRLLIAGSQA 154
DS SE A + ++ +RLLI +Q
Sbjct: 129 KDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKPSSFFLRLLILTAQV 188
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GC++G G I+++ SGA I IL ++LP CASA SD +VQISG V V AL +
Sbjct: 189 GCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASA--SDEIVQISGSVEVVRKALQSVS 246
Query: 215 NQLRENPPRQVISIS--------------PAYNYSAIRPAQPF 243
QL ENPPR S+S P +N S +PF
Sbjct: 247 QQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNRSFSAQGEPF 289
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 111/194 (57%), Gaps = 16/194 (8%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
Q++L FR++ P+ ++G +IGK G I+ +++ET + IK+ +A E+ VI+IS + +
Sbjct: 322 QEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDCVIVISGPAHPE 381
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ +S + A+ ++ I K + +A R L++ +Q GCL+G G I
Sbjct: 382 DRISPVQEAVFRVQTRIAKPIPDAKDHIMLA---------RFLVSSTQIGCLLGKGGSII 432
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R SGA I IL +++P CAS E + V+Q++G++ AV +AL++I +L+ + R
Sbjct: 433 TEMRKKSGAHIRILGKDKVPKCAS--EDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDS 490
Query: 226 ISISPAYNYSAIRP 239
P+ NY + P
Sbjct: 491 Y---PSVNYPSNSP 501
>gi|449436912|ref|XP_004136236.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449522219|ref|XP_004168125.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 693
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 108/188 (57%), Gaps = 13/188 (6%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
+ E P R + ++L +R++ P+ ++G VIGK G ++ ++++T IK+ D E
Sbjct: 322 QYEACIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSE 381
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+R+I+++ + D+ +S ++A+ ++ A I+K + E + VA R L++ +
Sbjct: 382 DRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAADSKEQNLVA---------RFLVSSN 432
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q GCL+G G I ++R S+GA I IL Q+P CA E + VVQI+G+ V +A+ +
Sbjct: 433 QIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAG--EDEEVVQINGEPETVQDAMFQ 490
Query: 213 IGNQLREN 220
I +LR +
Sbjct: 491 ITTRLRHH 498
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 47/217 (21%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----------- 99
+FR++ P +I ++G++G + KIREET I++ D I +ER+ +I
Sbjct: 47 VFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNP 106
Query: 100 ---SSKDNDNV----------------------VSDAE------NALQQIAALI---LKD 125
S +DN N V DA+ + L++ L+ + D
Sbjct: 107 EKKSKEDNKNSEVEENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFD 166
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
++ ++ + V + +RLL+ SQ GCL+G G ++++ + SGA I IL ++LP
Sbjct: 167 EEPEADGTDVEGDKLPTFILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLP 226
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
+ + +VQISG + V AL + QL ENPP
Sbjct: 227 PFVATNV--ELVQISGGIDVVKKALELVFQQLIENPP 261
>gi|449438568|ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 28/218 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
QDV+F+I+ + +IG VIGK G ++ ++ E+ AT+ + ++ +ER+I I++ +N ++
Sbjct: 302 QDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIES 361
Query: 107 VVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A+ A+ + + I K +S+S+ S V A RL++ +Q GC++G
Sbjct: 362 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVA--------RLVVPSNQVGCVLGKG 413
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I ++R +G I I++ +Q+P CA+ ESD +VQISG+ V +AL + +LR+N
Sbjct: 414 GVIISEIRKVTGTNIRIISSDQVPNCAA--ESDEIVQISGEFSNVQDALYNVTGRLRDNL 471
Query: 222 PRQVISISPAYN------------YSAIRPAQPFVEPT 247
V+S S N Y +R P V T
Sbjct: 472 FSSVLSNSGTRNGGGTSVYPETSPYGRVRDTAPLVRST 509
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + +IG VIGK G I+++++ T I++ +A + +RV+ +
Sbjct: 53 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 112
Query: 100 -----SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S + V S A+ L ++ IL + + V RLL +Q
Sbjct: 113 FLEQNSGASGEEVEASKAQEGLLKVFERIL--EVAAEIEGVEVGAEVGVVYCRLLADVAQ 170
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G +IG G+ +EK+R SG I +L ++LP CA SD +++I GDV A+ AL+ +
Sbjct: 171 VGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGP--SDEMIEIEGDVWAIKKALLAV 227
Query: 214 GNQLRENPPRQVISISPA 231
+L++ PP + ++ PA
Sbjct: 228 SRRLQDCPPSEKRTVRPA 245
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+K V+ R++VPS Q+G V+GK G I +IR+ T I+I
Sbjct: 390 SKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTGTNIRI 430
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 8/197 (4%)
Query: 25 VSGKRRREDG-EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+G+ +++D ++E +D + D +FRI+VP ++G +IG++G I+++ EE+KA I
Sbjct: 88 FNGEVKQQDNLQVEANDKRWPGWPGDSVFRILVPVHKVGAIIGRKGEFIKRMCEESKARI 147
Query: 84 KIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
KI D ER ++IS+KD D +S A + L +I I D S+ E + G
Sbjct: 148 KILDGPPGVPERAVMISAKDEPDEQISPAMDGLLRIHKRIA--DGSDGEFGQTQRGTGTM 205
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
RLL+ SQAG LIG G I+ +++SS A + I+ N P+ + DRVV+I G+
Sbjct: 206 GPTRLLVPASQAGSLIGKQGATIKSIQDSSKAVVRIVE-NVPPVALN---DDRVVEIQGE 261
Query: 203 VPAVLNALVEIGNQLRE 219
+V A+ I + LR+
Sbjct: 262 PLSVQKAVELIASHLRK 278
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S+ K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +R+++
Sbjct: 67 SEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIVL 126
Query: 99 ISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS ++ +S A +A+ ++ + +S + A VA +IRLL+A +QA L
Sbjct: 127 ISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAINL 186
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ S+GA++ +L+ +++P A+A E R+V++ G+ V AL + L
Sbjct: 187 IGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADE--RIVELQGEALKVQKALEAVVGHL 244
Query: 218 RE 219
R+
Sbjct: 245 RK 246
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQD-----------VLFRIIVPSRQIGKVIGKEGHRI 72
++ GKR E+ G+ +R D ++R + P ++ G +IGK G
Sbjct: 7 NIHGKRSNLQSELTGNGGSKRRNLHDDTDQNVIGSEETVYRYLCPVKKTGSIIGKGGDIA 66
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILK 124
++IR ETK+ ++I +A+ EERV+ I S D+ +V A +AL ++ +++
Sbjct: 67 KQIRSETKSNMRINEALPGCEERVVTIYSTNEELNHFGDDGELVCPALDALFKVHDMVVA 126
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D D + G T+R+L+ Q GC+IG GQ I+ LRN + A I ++ + L
Sbjct: 127 DIDHDDGNDDDDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHL 185
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
P CA D ++QI G+ V AL ++ + L NP R
Sbjct: 186 PSCALTLSHDELLQIIGEPLVVREALYQVASLLHANPSR 224
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I+ISSK+
Sbjct: 262 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDEDDCIIVISSKEF 321
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 322 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 370
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G+ A + AL ++ +LR N
Sbjct: 371 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGNPDAAMKALTQVILRLRAN 427
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 41/233 (17%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 152
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV------------QISGDV 203
C+IG GQ I+ +R+ + A I IL LP CA + SD ++ QI GD
Sbjct: 153 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQAFGNVFWALTSQIIGDA 210
Query: 204 PAVLNALVEIGNQLRENPPRQ---VISISPAYNYSAIRPAQPFVEPTSGQPLL 253
V AL ++ ++L ENP R ++S SP + + F+ P PL+
Sbjct: 211 SVVRKALHQLASRLHENPSRSQHLLLSSSP----NMYQSGGTFMTPNIDAPLV 259
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 290 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEF 349
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
E+ I A + + +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 350 ------FEDPSPTIDAALRLQPRCSEKAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 401
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 402 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 455
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 12/222 (5%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ +ETKA +++ DA +R+I+
Sbjct: 59 PEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIIL 118
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS K+ + +S A +A+ +I + +++SE +K AG V +IRLL+A +QA L
Sbjct: 119 ISGKEELEAAISPAMDAVIRIFKRVSGLSETDSE-NKGPAG-VTLCSIRLLVASTQAISL 176
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++ SSGA++ +L+ +++ A+A E R+V + G+ VL AL + L
Sbjct: 177 IGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEE--RIVDLQGEALMVLKALEAVIGHL 234
Query: 218 RENPPRQVISISPAY--NYSAIRPAQPF-VEPTSGQPLLQLT 256
R+ SI P Y Y+A P Q E S +PLL T
Sbjct: 235 RKFLVDH--SILPVYEKTYNASLPQQDRQAETWSDKPLLHTT 274
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
+ FR++ S ++G +IGK G+ I+ I+++T IKI + + + E+RVI+IS + + +
Sbjct: 395 LTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKILETVPKSEDRVIVISGPAHPGDGI 454
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NA+ + I +N E + ++ RL+++ +Q GCL+G G I ++
Sbjct: 455 SPAQNAILHVQRRITPPTANNKEGAAIS---------RLIVSPNQVGCLLGKGGSIIAEM 505
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
R S A IV+L+ +++P ESD VVQI+GD A+ AL++I +LR +
Sbjct: 506 RKLSKAHIVVLSKDKIP--KGVQESDEVVQITGDSEAIQEALMQITARLRNH 555
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+ RLL+ SQ G L+G G I+++ SG I + + +LPLCA D + QI+G++
Sbjct: 233 SFRLLVLDSQVGWLLGNRGSVIKQMSADSGCEIRV-SKEKLPLCALL--KDELCQITGEL 289
Query: 204 PAVLNALVEIGNQLRENPPRQVISI-----SPAYNYSAIRPAQPFVEPTSGQPL 252
+V L + L +PPR+ + S A+N S P P ++P P
Sbjct: 290 DSVRKGLNAVAQVLLTHPPRESDVLPSGLSSHAFNRSDALP--PGMQPNFSLPF 341
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
L RI+ P+ + G VIGK G I KIR+E I++ +A+ +ERVI+I+ + D S
Sbjct: 46 LIRILCPTEKCGNVIGKGGVIIAKIRQENGVKIRVDEAVPGCDERVIVITITEKDKEAS 104
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 115/182 (63%), Gaps = 6/182 (3%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ EET++ I++ DA +R+++
Sbjct: 42 PEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVL 101
Query: 99 ISSK-DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S K D + +S A +A+ +I + ++++E + AAG +A ++IRLL+A +QA L
Sbjct: 102 VSGKEDPEAALSPAMDAVVRIFKRVSGFSETDAENQESAAG-LAFSSIRLLVASTQAINL 160
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ ++ A++ +L+ +++ A+A+E R+V+I G+ VL AL + L
Sbjct: 161 IGKQGSLIKSIQENTSASVRVLSGDEVQFYATANE--RIVEIQGEALKVLKALEAVVGHL 218
Query: 218 RE 219
R+
Sbjct: 219 RK 220
>gi|224067136|ref|XP_002302373.1| predicted protein [Populus trichocarpa]
gi|222844099|gb|EEE81646.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 14/174 (8%)
Query: 49 DVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
DVL FR++ + ++G VIGK G I+ +++ET IK+ + ++ E+RVI+IS + D+
Sbjct: 322 DVLTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLAHPDD 381
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S ++A+ ++ I SN E + +A RLL++ +Q GCL+G G +
Sbjct: 382 RISAPQDAVIRVQTRIAMAI-SNKEKAIIA---------RLLVSSNQIGCLLGKGGAIMS 431
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R SSGA I IL +Q+P CAS ES+ VVQI+G+ V AL++I +LR +
Sbjct: 432 EMRKSSGAYIRILGKDQIPNCAS--ESEGVVQINGEFEVVKEALLQITTRLRHH 483
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 48/242 (19%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+ G + P + + A V+FRI+ P+ +IG V G+ G I +IR+ET A + +
Sbjct: 23 GKRQNTAGTNSPNQPLKSSPAA-VVFRILCPAPKIGTVTGEGGAVISQIRQETGAKVIVE 81
Query: 87 DAIARHEERVIII-------------SSKDND---NVVSDAEN----------------- 113
+ I +E++I+I S KD D NV +++N
Sbjct: 82 ENIPGCDEQIIVITGSDEKTEVSIEQSKKDGDEEANVAEESDNKNDGNEKEEEKEGVPVE 141
Query: 114 ---ALQQIAAL---ILKDDDSNSEASKVAAGHVAANT------IRLLIAGSQAGCLIGMS 161
+++ +++ +L EA V G N +RLL+ SQ GCL+G
Sbjct: 142 DSGTVKETSSMQKALLLVSGKMFEADPVTDGGDEENNKPSTFILRLLVLSSQVGCLLGKG 201
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++ SGA I I ++LP+C+S SD +V+I+G++ AV AL + QL ENP
Sbjct: 202 GSVIKQMSAESGAQIRISPRDRLPICSSV--SDELVEITGEIDAVRKALQSVSKQLLENP 259
Query: 222 PR 223
PR
Sbjct: 260 PR 261
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
VSGK D +G D + K + R++V S Q+G ++GK G I+++ E+ A I+
Sbjct: 159 VSGKMFEADPVTDGGD-EENNKPSTFILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIR 217
Query: 85 IADAIARHEERVIIISSKDNDNV-----VSDAENALQQIAALIL----KDDDS 128
I+ +R+ I SS ++ V + ALQ ++ +L +D DS
Sbjct: 218 ISP-----RDRLPICSSVSDELVEITGEIDAVRKALQSVSKQLLENPPRDHDS 265
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++I
Sbjct: 221 DNKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMI 280
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D +S A + L ++ I D S + +AG++ RLL+ SQAG LI
Sbjct: 281 SAKDEPDAPLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPT--RLLVPSSQAGSLI 338
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ +++SS +IV + N P+ A DRVV+I G+ V A+ I + LR
Sbjct: 339 GKQGATIKSIQDSS-KSIVRIVENVPPV---ALNDDRVVEIQGEPLGVQEAVELISSHLR 394
Query: 219 E 219
+
Sbjct: 395 K 395
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 5/170 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ +
Sbjct: 153 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSALP 212
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D + ++S ++G + RLL+ SQAG LIG G ++ ++
Sbjct: 213 PAMDGLLRVHKRIV--DGLDGDSSHASSGTGTKVSTRLLVPASQAGSLIGKQGGTVKSIQ 270
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L LP+ A + DRVV++ GD V A+ I + LR+
Sbjct: 271 EASSCVVRVLGAEDLPVFAL--QDDRVVEVLGDAAGVHKAVELIASHLRK 318
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G I+K+ +ET+A I++ DA +RV++IS K D +
Sbjct: 60 DCVFRLIVPVLKVGSIIGRKGDLIKKMCDETRARIRVLDAPIGTPDRVVLISGKEDVEAP 119
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + + N A ++ A +A ++IRLL+A +QA LIG G I+
Sbjct: 120 LSPAMDAVIRVFKRVSGLPEGN--AQELGAAGIAFSSIRLLVASTQAINLIGKQGSIIKS 177
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+GA++ +L+ N++P + E R+V + G+ VL AL I LR+
Sbjct: 178 IQESTGASVRVLSENEVPFYVATDE--RIVDLQGEAMKVLEALEAIVGHLRK 227
>gi|449516663|ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 116/206 (56%), Gaps = 24/206 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
QDV+F+I+ + +IG VIGK G ++ ++ E+ AT+ + ++ +ER+I I++ +N ++
Sbjct: 307 QDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIES 366
Query: 107 VVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A+ A+ + + I K +S+S+ S V A RL++ +Q GC++G
Sbjct: 367 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVA--------RLVVPSNQVGCVLGKG 418
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I ++R +G I I++ +Q+P CA+ ESD +VQISG+ V +AL + +LR+N
Sbjct: 419 GVIISEIRKVTGTNIRIISSDQVPNCAA--ESDEIVQISGEFSNVQDALYNVTGRLRDN- 475
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPT 247
+ + P Y +R P V T
Sbjct: 476 ----LFLVP---YGRVRDTAPLVRST 494
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + +IG VIGK G I+++++ T I++ +A + +RV+ +
Sbjct: 58 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 117
Query: 100 -----SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S + V S A+ L ++ IL + + V RLL +Q
Sbjct: 118 FLEQNSGASGEEVEASKAQEGLLKVFERIL--EVAAEIEGVEVGAEVGVVYCRLLADVAQ 175
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G +IG G+ +EK+R SG I +L ++LP CA SD +++I GDV A+ AL+ +
Sbjct: 176 VGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGP--SDEMIEIEGDVWAIKKALLAV 232
Query: 214 GNQLRENPPRQVISISPA 231
+L++ PP + ++ PA
Sbjct: 233 SRRLQDCPPSEKRTVRPA 250
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+K V+ R++VPS Q+G V+GK G I +IR+ T I+I
Sbjct: 395 SKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTGTNIRI 435
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K++ +
Sbjct: 49 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPGLE 108
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 109 LPPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 165
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+++I GD VL AL + N LR+
Sbjct: 166 KAIQESTGATIRVISVDERERPFYVTDDERIIEIQGDTEKVLKALQAVSNHLRK 219
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++IS+KD D +S
Sbjct: 122 VFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDEPDAPLS 181
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I D S + +AG++ RLL+ SQAG LIG G I+ ++
Sbjct: 182 PAMDGLLRVHKRITDSSDGESSQPQRSAGNIG--PTRLLVPSSQAGSLIGKQGATIKSIQ 239
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+SS +IV + N P+ A DRVV+I G+ V A+ I + LR+
Sbjct: 240 DSS-KSIVRIVENVPPV---ALNDDRVVEIQGEPLGVQKAVELISSHLRK 285
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+G+ +++D +D K + +FRI++P++++G +IG++G I+K+ EE+KA IK
Sbjct: 83 YNGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIK 142
Query: 85 IADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
I D ER ++IS+KD D +S A + L ++ I D +S + +V
Sbjct: 143 ILDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNISNVG-- 200
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
RLL+ SQAG LIG G I+ +++SS + + I+ LPL A DRVV+I G+
Sbjct: 201 PTRLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVAL--NDDRVVEIQGEP 256
Query: 204 PAVLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 257 VGVQKALESIASHLRK 272
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 103/181 (56%), Gaps = 16/181 (8%)
Query: 25 VSGKRRREDGEIEGSDPKRRA------KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
+G +RR D D KR+A + ++R++V S+++G VIGK G ++ IR+E
Sbjct: 72 AAGSKRRYDDRDGPPDAKRQAIGAAEGPQTETVYRLLVQSKKVGSVIGKAGTIVKAIRDE 131
Query: 79 TKATIKIADAIARHEERVIIISSKDNDNVVSD-AENALQQIAALILKDDDSNSEASKVAA 137
T A I++ + + +ERVI+IS++ + +D A+ AL ++ A + + ++
Sbjct: 132 TGARIRVVEGVPNCDERVIVISARSDAARHTDAAQEALFKVHARVHEHEEGPHPPP---- 187
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
A T R+L+ +QAGCLIG +G I+++R +SGA I IL LP C + +DRVV
Sbjct: 188 ---ANATTRMLVCHTQAGCLIGKAGAIIKEIREASGAHIKILPAEDLPPCGLS--NDRVV 242
Query: 198 Q 198
Q
Sbjct: 243 Q 243
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQ 60
+E+ E N S + E + +G+ +++D +D K + +FRI++P+++
Sbjct: 59 YSEEPENQYNEEPSNPYQEESDNAYNGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQK 118
Query: 61 IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIA 119
+G +IG++G I+K+ EE+KA IKI D ER ++IS+KD D +S A + L ++
Sbjct: 119 VGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVY 178
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
I D +S + +V RLL+ SQAG LIG G I+ +++SS + + I+
Sbjct: 179 KRITDGSDGDSGQPERNISNVGPT--RLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV 236
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
LPL A DRVV+I G+ V AL I + LR+
Sbjct: 237 --ETLPLVAL--NDDRVVEIQGEPVGVQKALESIASHLRK 272
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQ 60
+E+ E N S + E + +G+ +++D +D K + +FRI++P+++
Sbjct: 61 YSEEPENQYNEEPSNPYQEESDNAYNGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQK 120
Query: 61 IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIA 119
+G +IG++G I+K+ EE+KA IKI D ER ++IS+KD D +S A + L ++
Sbjct: 121 VGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVY 180
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
I D +S + +V RLL+ SQAG LIG G I+ +++SS + + I+
Sbjct: 181 KRITDGSDGDSGQPERNISNVG--PTRLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV 238
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
LPL A DRVV+I G+ V AL I + LR+
Sbjct: 239 --ETLPLVAL--NDDRVVEIQGEPVGVQKALESIASHLRK 274
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQ 60
+E+ E N S + E + +G+ +++D +D K + +FRI++P+++
Sbjct: 59 YSEEPENQYNEEPSNPYQEESDNAYNGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQK 118
Query: 61 IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIA 119
+G +IG++G I+K+ EE+KA IKI D ER ++IS+KD D +S A + L ++
Sbjct: 119 VGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVY 178
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
I D +S + +V RLL+ SQAG LIG G I+ +++SS + + I+
Sbjct: 179 KRITDGSDGDSGQPERNISNVGPT--RLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV 236
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
LPL A DRVV+I G+ V AL I + LR+
Sbjct: 237 --ETLPLVAL--NDDRVVEIQGEPVGVQKALESIASHLRK 272
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ E TKA ++I + ER++++S K++ +
Sbjct: 39 DSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLE 98
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+S A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 99 LSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 155
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 156 KAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 209
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 109/193 (56%), Gaps = 7/193 (3%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
+ R +D I G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 26 RGRDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD 85
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER +++S+K+ D+ + A + L ++ I+ D ++S + G + R
Sbjct: 86 GPPGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIV--DGLEGDSSHMPPG--GKVSTR 141
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL+A SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ V
Sbjct: 142 LLVAASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFAL--QDDRVVEVVGEPIGV 199
Query: 207 LNALVEIGNQLRE 219
A+ I + LR+
Sbjct: 200 HKAVELIASHLRK 212
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ E TKA ++I + ER++++S K++ +
Sbjct: 39 DSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLE 98
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+S A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 99 LSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 155
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 156 KAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 209
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 24 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 83
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 84 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 134 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 184
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 111/202 (54%), Gaps = 7/202 (3%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
PE + R +D I G + + + +FR++VP++++G +IG++G I+KI EE
Sbjct: 86 PEDSQPQQKRGRDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEE 145
Query: 79 TKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAA 137
T+A IKI D ER +++S+K+ D+ + A + L ++ I+ D ++S +
Sbjct: 146 TRARIKILDGPPGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIV--DGLEGDSSHMPP 203
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
G + RLL+A SQAG LIG G ++ ++ +S + +L LP+ A + DRVV
Sbjct: 204 G--GKVSTRLLVAASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFAL--QDDRVV 259
Query: 198 QISGDVPAVLNALVEIGNQLRE 219
++ G+ V A+ I + LR+
Sbjct: 260 EVVGEPIGVHKAVELIASHLRK 281
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 235 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 294
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 295 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 344
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 345 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 395
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 243 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 302
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 303 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 352
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 353 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 403
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+E V+ IS D V A A +++ + D++ E + G V R+L A
Sbjct: 66 DEAVLSISGPDAPAV---AVRAWERVVGHRVGGDEAAGEEEREVPGVVGC---RMLAASG 119
Query: 153 QAGCLIGMSGQNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
Q GC++G G+ +E++R SGA I V +QLP A+ D ++ ISG+ AV AL+
Sbjct: 120 QVGCVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAP--VDELIHISGNFSAVRKALL 177
Query: 212 EIGNQLRENP 221
+ L++NP
Sbjct: 178 LVTTCLQDNP 187
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R + + FR++ PS +G +IGK G I+ +++ET + IK+ +AI E+ +IIIS
Sbjct: 304 RMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISG 363
Query: 102 KDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ D+ +S + A+ ++ I + + E S +A R++++ GCL+G
Sbjct: 364 PAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLA---------RVIVSSKHIGCLLGK 414
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++RN SGA I +L ++ P C S E D V+Q+SG + AV +AL++I +LR N
Sbjct: 415 GGSIIAEMRNLSGAHIRMLGKDKGPKCVS--EDDEVIQVSGVIEAVHDALLQITTRLRNN 472
Query: 221 PPRQVISISPAYNY 234
R P+ N+
Sbjct: 473 FFRDAF---PSANF 483
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 59/242 (24%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KRR+ G D + V+FR++ P+ +IG VIGK G I +IR ET +KI +
Sbjct: 15 KRRKPSGVFSPLD-----VSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEE 69
Query: 88 AIARHEERVIII-----------------------------------SSKDNDNV-VSDA 111
+ EERVI ++D D+V V D+
Sbjct: 70 PVPGCEERVITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDS 129
Query: 112 EN-------ALQQIAALILK---DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
++ + + L+ + +D+ E+ K G +RLLI +Q GC++G
Sbjct: 130 QSEKVNSNPTIMRAVMLVFERVAEDEGGDESKKGYFG------LRLLILSNQVGCILGKG 183
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++ SGA I IL ++P CAS +SD +VQI+G V V AL + QL EN
Sbjct: 184 GSVIKRMSAESGAQIRILPKEEIPACAS--DSDELVQITGGVEVVRRALQSVFQQLVENS 241
Query: 222 PR 223
PR
Sbjct: 242 PR 243
>gi|255563372|ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 698
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 28/197 (14%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDN 106
Q+V+F+I+ P+ +G VIGK G I+ ++ ET A+I I IA +ER+I +I+S++ ++
Sbjct: 303 QEVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATIAESDERLITVIASENPES 362
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ + + RL++ +Q GCL+G G I
Sbjct: 363 RYSAAQKAVVLVFS-------------------------RLVVPSNQVGCLLGKGGIIIS 397
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+R ++G +I ILA +QLP C E+++VVQISGD V +A+ + +LR+N +
Sbjct: 398 DMRKTTGTSIKILAGDQLPKCVP--ENEQVVQISGDFMNVKDAVYHVTGRLRDNLFSSAL 455
Query: 227 SISPAYNYSAIRPAQPF 243
S + + I A P+
Sbjct: 456 STPVTRSTTVITEASPY 472
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 112/206 (54%), Gaps = 15/206 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------- 102
V FR++ + +IG +IGK G I+++++++ A I+I ++ A +RVI + ++
Sbjct: 56 VSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKV 115
Query: 103 --DNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+++ V VS A+ L ++ IL + + S+ V AG + R+L QAG +IG
Sbjct: 116 RVESEEVDVSRAQEGLIRVFERIL-EVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVIG 174
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ +EK+R G I +L ++LP+CA +E +++I GD+ +V AL+ + L++
Sbjct: 175 KGGKVVEKIRKDCGVKIRVLT-DKLPVCAGPNE--EMIEIEGDILSVKKALIAVSRCLQD 231
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVE 245
P + + + A+ P +P E
Sbjct: 232 CQPVDKPRVGSSKYFEAV-PQEPLPE 256
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+E D K + +FR++VP +++G VIG++G I+K+ EE++A IKI D ER
Sbjct: 112 VETEDKKWPGWPGESVFRVLVPVQKVGAVIGRKGEFIKKMCEESRARIKILDGPPGVPER 171
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
++IS+KD D +VS A + L ++ I DS ++ + AG V RLL+ SQA
Sbjct: 172 AVMISAKDEPDALVSPAVDGLLRVHKRITDGLDSETDQPQRGAGPVGPT--RLLVPASQA 229
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G I+ ++++S + IL N P+ A DRVV+I G+ V A+ I
Sbjct: 230 GSLIGKQGATIKSIQDASKCALRILE-NVPPV---ALNDDRVVEIQGEPLDVHKAVELIA 285
Query: 215 NQLRE 219
+ LR+
Sbjct: 286 SHLRK 290
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 110/184 (59%), Gaps = 13/184 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +RV++
Sbjct: 70 SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVL 129
Query: 99 ISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS K+ ++ +S A +A+ ++ + L +++ ++AS +IRLL+A +QA
Sbjct: 130 ISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFC--------SIRLLVASTQAI 181
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG G I+ ++ S+GA++ +L+ +++P A A E R+V++ G+ VL AL +
Sbjct: 182 NLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADE--RMVELQGESLKVLKALEGVVG 239
Query: 216 QLRE 219
LR+
Sbjct: 240 HLRK 243
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S+ K + +FR++VP++++G +IG++G I+KI EET+A IKI D ER ++
Sbjct: 74 SEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVM 133
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S+KD D+ A + L ++ I+ + ++ + A V + RLL+A SQAG L
Sbjct: 134 VSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHAPNAGSKV---STRLLVAASQAGSL 190
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ ++ S + +L LP+ A + DRVV++ GD V A+ I + L
Sbjct: 191 IGKQGGTVKSIQEESNCIVRVLGSEDLPVFAL--QDDRVVEVLGDPAGVHKAVELIASHL 248
Query: 218 RE 219
R+
Sbjct: 249 RK 250
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 28/258 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKA-------QDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
D G +RR +G D + + +D ++R + P R+IG +IG+ G +++R
Sbjct: 17 DYGGGKRRNPTADDGEDSDHQQQQQQHTITNEDTVYRYLCPLRKIGSIIGRGGEIAKQLR 76
Query: 77 EETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDDDS 128
E+K+ I+I++A+A EER++ I S D+ V A++AL + I+ +D +
Sbjct: 77 SESKSNIRISEAMAGFEERIVTIYSNSEESNLFGDSGEFVCPAQDALFMVHDRIIAEDLN 136
Query: 129 NSEASKVAAGHVAAN----------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
NS + T+R+L+ Q GC+IG GQ I+ +R+ +GA I I
Sbjct: 137 NSNNNNEEEDDEEEEEFGESKEQVVTVRMLVPADQIGCVIGKGGQVIQSIRSETGAQIRI 196
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
L LP A + SD ++ I G+ V AL ++ +L ENP R + + + + +
Sbjct: 197 LKDEHLPPLALS--SDELLLIIGEPAVVRKALYQVATRLHENPSRSQHLLLSSSSTNMYQ 254
Query: 239 PAQP-FVEPTSGQPLLQL 255
FV PT+G L+ L
Sbjct: 255 SGGGMFVTPTAGASLMGL 272
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 10/182 (5%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD + +++ R++ P IG VIGK G I++IR+E++A+IK+ + A ++ +I
Sbjct: 286 SDQRDEGSSKEFSLRLVCPIGNIGGVIGKGGGIIKQIRQESRASIKVDSSAAEGDDCIIF 345
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ D L AAL L+ SE ++ +G + T RLL+ SQ GCL+
Sbjct: 346 ISAKE---FFEDQSATL--TAALRLQ--PRCSEKTERDSGD-SVITTRLLVPRSQIGCLM 397
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I ++RN + A+I ILA + LP AS E D +VQI+G NAL+ + +L+
Sbjct: 398 GKGGAIISEMRNVTRASIRILAEDNLPKVAS--EDDEMVQITGSHDVASNALLHVVLRLK 455
Query: 219 EN 220
N
Sbjct: 456 AN 457
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 11/183 (6%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++I
Sbjct: 111 DDKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMI 170
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKV--AAGHVAANTIRLLIAGSQAGC 156
S+KD D +S A + L ++ I D SN E+ ++ +AG++ RLL+ SQAG
Sbjct: 171 SAKDEPDAPLSPAVDGLLRVHKRIT--DSSNGESGQLQRSAGNIGP--TRLLVPSSQAGS 226
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G I+ +++SS + + I+ N P+ A DRVV+I G+ V A+ I +
Sbjct: 227 LIGKQGATIKSIQDSSKSVVRIVE-NVPPV---ALNDDRVVEIQGEPLGVQKAVELIASH 282
Query: 217 LRE 219
LR+
Sbjct: 283 LRK 285
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNVVS 109
+FR+IVP ++G +IG++G I+K EET A I++ DA +R+++IS K D + +S
Sbjct: 45 VFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLS 104
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A +A+ +I + L + D+N+ A AAG VA +IRLL+A +QA LIG G +I+
Sbjct: 105 PAMDAILRIFKRVSGLSETDNNNTA---AAG-VALCSIRLLVASTQAINLIGKQGSSIKA 160
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA I +L+ ++LP A A E R++ + G+ VL AL + LR+
Sbjct: 161 IQENTGAVIRVLSGDELPSYAGADE--RIIDLQGETLKVLKALEAVVGHLRK 210
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 13/175 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D +FR+IVP ++G +IG++G I+K+ EET+A IK+ D +R+++IS K+ +
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L DDD A V + ++RLL+A +QA LIG G
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS------SVRLLVASTQAINLIGKQGS 186
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
I+ + +SGA++ IL+ + P A+ E R+V + G+ +L AL I LR
Sbjct: 187 LIKSIVENSGASVRILSEEETPFYAAQDE--RIVDLQGEALKILKALEAIVGHLR 239
>gi|356562072|ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 105/172 (61%), Gaps = 10/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VS 109
+FR+IVP ++G +IG++G I+K EETKA I++ D +R+++IS K+ +S
Sbjct: 47 VFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEEPEAPLS 106
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A NA+ ++ + + D+ ++AS VA ++RLL+A +QA LIG G I+
Sbjct: 107 PAMNAVIRVFKRVSGFSEIDAENKASAVAFC-----SVRLLVASTQAINLIGKQGSLIKS 161
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA++ +L+ +++P A+A E R+V++ G+ VL AL + LR+
Sbjct: 162 IQENTGASVRVLSGDEVPFYAAADE--RIVELQGEAMKVLKALEAVVGHLRK 211
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 106/224 (47%), Gaps = 35/224 (15%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
RR GE GS+ + R + V +R++ P+ +IG+VIGKEG I+ R ET A +K+A
Sbjct: 41 RRHRGE-HGSNGEFRDAS--VRYRLLCPTTRIGRVIGKEGRVIKATRAETGARVKVAPTT 97
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV--------- 140
+ERVI+++S D+ V D E AL D E AA
Sbjct: 98 RGADERVILVASGDDLTVGEDGEGMTTAEVALFRIFDTITGEEGVTAARGGEGEGEGEAS 157
Query: 141 -----AANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
A+T RLL+ Q G LIG G I +R SSGAT+ ++ N LP CAS +
Sbjct: 158 GGSTRGASTPICRLLVPRVQVGSLIGKGGTVISAIRASSGATVRVMPANMLPACAS--QG 215
Query: 194 DRVVQISG--------------DVPAVLNALVEIGNQLRENPPR 223
D ++QI+ + +V NAL I LRE P +
Sbjct: 216 DELLQITAPSRDADGAERDQKLSMASVKNALRMIAKHLREYPSK 259
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 12/159 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
++ FR++ P + G VIG+ G IQ+IR +T A +K+ + + EER+I +SS D+
Sbjct: 312 EITFRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCEQVNGAEERIICVSSSDDGLAP 371
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL ++ I++ +AG+ RLL+ SQ GCLIG G I++
Sbjct: 372 MLAAQVALFRVYRCIVE-----------SAGNEIPLPFRLLVQTSQIGCLIGKGGSIIKQ 420
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+RN +GAT+ +L LP CA+ E + Q D A+
Sbjct: 421 IRNETGATVRVLPSEALPSCANDDELLEIGQWPADACAL 459
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S+ K + +FR++VP++++G +IG++G I+KI EET+A IKI D ER ++
Sbjct: 74 SEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVM 133
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S+KD D+ A + L ++ I+ + ++ + A V+ RLL+A SQAG L
Sbjct: 134 VSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHAPNAGSKVST---RLLVAASQAGSL 190
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ ++ S + +L LP+ A + DRVV++ GD V A+ I + L
Sbjct: 191 IGKQGGTVKSIQEESNCIVRVLGSEDLPVFAL--QDDRVVEVLGDPAGVHKAVELIASHL 248
Query: 218 RE 219
R+
Sbjct: 249 RK 250
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R +D ++E KR A V +R++ P+ +IG VIGK G IQ++R+ T A IK+
Sbjct: 10 RHSDDVQMEAGVVKRSAAGAMVEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPE 69
Query: 89 IARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+A ER+I +SS D + A+ AL + + + + D + + V +R+
Sbjct: 70 VAGCSERLISLSSSDEPGAELCRAQEALFAVQSRLSEADAAQEDTCCV---------VRM 120
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ +Q GC++G G+ I LR +GA I + LP CA + +S +V + G+ AV
Sbjct: 121 LVEQAQVGCVLGKGGEVISDLRRRTGANIRVSDKRDLPACAGSEDS--LVAVKGEAQAVS 178
Query: 208 NALVEIGNQLRENPPR--QVISISPAYNYSAIRPAQPFVEPTSGQ 250
+AL ++ LR + R Q +N +A+ A V+P Q
Sbjct: 179 DALRQLSALLRTHSQRKPQQARAPMTFNITAV--ATAAVQPEQAQ 221
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------ADAIARHE----ERVII 98
+V R++VP+ IG VIG+ G I+ IR++T A IK+ A A E +RVI
Sbjct: 266 EVQLRLLVPATHIGCVIGRRGEMIRTIRDDTGAHIKVHEGSQGARAFPPSEKKGVDRVIT 325
Query: 99 I-SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC- 156
+ +++ VS E A+ +A +L +G IR+L+ Q G
Sbjct: 326 VAAAEAAGAAVSPTEEAVCLMALCLLGP-----------SGLPPVPCIRILVPTPQGGTA 374
Query: 157 ----------LIGMSGQNIEKLRNSSGATIVILAP------NQLPLCASAHESDRVVQIS 200
++G G I ++R SGA V L P LP +A + +VVQI
Sbjct: 375 EALSLLQVGGVLGKGGATITQVRKDSGAG-VRLVPLEAEDDRWLPRDVAAGQMHKVVQIE 433
Query: 201 GDVPAVLNALVEIGNQLR 218
G + A + A+ + QLR
Sbjct: 434 GPITATVKAVRAVCAQLR 451
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 15/163 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
+++FR++ P + G VIG+ G IQ+IR ET A +K+ + I EER+I +SS D+
Sbjct: 342 EIMFRLLCPVSKTGSVIGRNGEVIQQIRSETGAKVKVCEQINNAEERIICVSSNDDGLAP 401
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL ++ I+ D S S+ RLL+ SQ GCLIG G I +
Sbjct: 402 MLAAQVALFRVYRCIV--DSSGSDVPL---------PFRLLVQTSQIGCLIGKGGSIIRQ 450
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
+RN +GAT+ +L + LP CA+A D +++I G PA AL
Sbjct: 451 IRNETGATVRVLPSDALPACANAD--DELLEI-GQWPADACAL 490
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 44/220 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD------ 103
V FR++ P +IG+VIGKEG I+ +R ET A +K+A +ERV++++S +
Sbjct: 70 VQFRLLCPVARIGRVIGKEGRVIKALRAETGARVKVAPTTRGADERVVLVASGEELMMDD 129
Query: 104 ---NDNVVSDAENALQQI---------AALILKDDDSNSEA------SKVAAGHVAAN-- 143
+D V+ AE AL +I AL D ++SE+ S G + N
Sbjct: 130 GDGSDVPVTTAERALFRIFDTVASESGGALDGTRDGTSSESGSGVPESSSTGGERSMNGG 189
Query: 144 ----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
RLL+ +Q G LIG G I +R SSGAT+ ++ LP CAS D ++QI
Sbjct: 190 RAVPICRLLVPRAQVGSLIGKGGAVISAIRASSGATVRLMPATMLPTCAS--RGDELLQI 247
Query: 200 SGDV------------PAVLNALVEIGNQLRENPPRQVIS 227
+ V +V +AL + LRE P + S
Sbjct: 248 TAPVRDTDGNDVDLALASVKSALRMVAKNLREYPTKMATS 287
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP +++G +IG++G I+KI EETKA IKI D ER +++S+K+ D +
Sbjct: 126 VFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDCPIP 185
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ ++ D ++ S +AAG RLL+A +QAG LIG G I+ ++
Sbjct: 186 PAVDGLLRVHKQVINVDRDLAD-SALAAGRSVVT--RLLVADTQAGSLIGKQGSTIKSIQ 242
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ SG TI +L LP+ A D +V+I G+ V A+ I LR+
Sbjct: 243 DGSGCTIRVLGSENLPIFAL--RDDSIVEIQGESAGVHKAVELIAVHLRK 290
>gi|297794027|ref|XP_002864898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310733|gb|EFH41157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + +A EER+I +++ +N
Sbjct: 458 QDVVFKILCSTENAGGVIGSGGKVVRMLHSETGAFINVGNTLADCEERLIAVTAPENPEC 517
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ L+ S + G + T RL++ SQ GC++G G + +
Sbjct: 518 QS---SPAQKAIMLLFSRLFELSTKKILDNGPRTSITARLVVPTSQIGCVLGKGGVIVSE 574
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GATI IL Q P C S E+D+V+QI+G+ P V A+ I ++LR++
Sbjct: 575 MRKTTGATIQILKVEQNPKCVS--ENDQVIQITGEFPNVREAIFHITSRLRDS 625
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + +RVI II+ D+ + V
Sbjct: 47 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQADSKSRVKL 106
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 107 GVNNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV------------CRLLT 154
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V+I G+ AV A
Sbjct: 155 ESSHAGAVIGKGGQMVGSIRKETGCKISIRTEN-LPICADT--DDEMVEIEGNAIAVKKA 211
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 212 LVSISRCLQ 220
>gi|308080276|ref|NP_001183239.1| hypothetical protein [Zea mays]
gi|238010240|gb|ACR36155.1| unknown [Zea mays]
gi|414884425|tpg|DAA60439.1| TPA: hypothetical protein ZEAMMB73_126154 [Zea mays]
Length = 647
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 12/207 (5%)
Query: 37 EGSDPKRRAKA-QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
EG+ ++K Q V FR+++P+ G +IGK+G I+ I ET A I + +A +ER
Sbjct: 264 EGNTGDAQSKTLQQVSFRLLLPTYLAGGLIGKKGLIIKGIEVETGACIDVGAPVAGCKER 323
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQA 154
VI I + ++ D+E + Q A L++ D E + + A+ +R+L+ +Q
Sbjct: 324 VITICALES----PDSEYHIVQSALLLIFDRMMEMETNTHSTFEKASQFLVRVLVLKNQF 379
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G+ G I+++ N++GA I IL ++P CAS E VVQI+G++ + NAL +
Sbjct: 380 GCLVGLGGSIIKEMVNTTGARIQILDDTEIPACASTFE--LVVQITGELMNIRNALSLVF 437
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQ 241
+LR + S YN S I ++
Sbjct: 438 WKLR----NHIFSNETDYNNSHISSSE 460
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRI 72
++ GKR E G+ +R ++D ++R + P ++ G +IGK G
Sbjct: 7 NIHGKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIA 66
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILK 124
++IR ETK+ ++I +A+ EERV+ + S D+ +V A +AL ++ +++
Sbjct: 67 KQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVA 126
Query: 125 DDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
D D + G T+R+L+ Q GC+IG GQ I+ LRN + A I ++ +
Sbjct: 127 DADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDH 185
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
LP CA D ++ I G+ V AL ++ + L +NP R
Sbjct: 186 LPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSR 225
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 264 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 323
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 324 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 372
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 373 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 429
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP +++G +IG++G I+KI EETKA IKI D ER +++S+K+ D +
Sbjct: 127 VFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIP 186
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ ++ + D + S +AAG RLL+A +QAG LIG G I+ ++
Sbjct: 187 PAIDGLLRVHKQVI-NVDRDLVDSALAAGRSVVT--RLLVADTQAGSLIGKQGSTIKSIQ 243
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ SG TI +L LP+ A D +V+I G+ V A+ I LR+
Sbjct: 244 DGSGCTIRVLGSENLPVFAL--RDDSIVEIQGESAGVHKAVELIAVHLRK 291
>gi|356549146|ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 106/172 (61%), Gaps = 10/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNVVS 109
+FR+IVP ++G +IG++G I+K EETKA I++ D +R+++IS K D + +S
Sbjct: 47 VFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEDLEAPLS 106
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A +A+ ++ + + D+ ++AS VA ++RLL+A +QA LIG G I+
Sbjct: 107 PAMDAVIRVFKRVSGFSEIDAKNKASA-----VAFCSVRLLVASTQAINLIGKQGSLIKS 161
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA++ +L+ +++P A+A E R+V++ G+ VL AL + LR+
Sbjct: 162 IQENTGASVRVLSGDEVPFYAAADE--RIVELQGEAMKVLKALEAVVGHLRK 211
>gi|226530329|ref|NP_001151982.1| nucleic acid binding protein [Zea mays]
gi|195651499|gb|ACG45217.1| nucleic acid binding protein [Zea mays]
gi|224029689|gb|ACN33920.1| unknown [Zea mays]
gi|413947861|gb|AFW80510.1| nucleic acid binding protein [Zea mays]
Length = 705
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ P ++G +IGK G+ ++ I+ +T IK+ D + + ++R+I IS + + +S
Sbjct: 380 FRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAHPSDGISP 439
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+NA+ + I+ E T RL+++G+Q GC++G G I ++R
Sbjct: 440 AQNAILHVQRKIMLPSSDKKEGPA---------TCRLIVSGNQVGCVLGKGGSIIAEMRK 490
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230
SGA IV+L+ +++P H D V+QI+G A+ AL+++ +LR + R + P
Sbjct: 491 LSGAFIVVLSKDKIPRGVPEH--DEVIQINGSCEAIQEALMQVTARLRNHLFRDRM---P 545
Query: 231 AYNYSAIRPAQPFVEPTSG 249
A + +RP ++P G
Sbjct: 546 AVGPN-MRPPFGLLDPQFG 563
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+FRI+ P+ + G VIGK G I KIR+ET+ I++ A +ERVI I++ + D
Sbjct: 46 IFRILCPASKSGNVIGKGGAIIAKIRQETRMRIRVDRAAPGCDERVIFITAANKD 100
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
+ N+E +A A ++R+L+ SQAG L+G G ++++ +G I +L N LP
Sbjct: 218 EGNNETGNASAAS-APVSLRMLVLYSQAGWLLGKGGSVVKQMAADNGCEIRVLKDN-LPS 275
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
CA + D++ QI+G++ +V L + L +PP++ +++
Sbjct: 276 CALLN--DKLCQITGEIDSVRKGLNAVSEVLLAHPPKETDAVA 316
>gi|110224788|emb|CAL07994.1| putative nucleic acid binding protein [Platanus x acerifolia]
Length = 288
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A++ R++ P+ IG VIGK G I++IR+E+ A IK+ + A ++ +I IS
Sbjct: 87 PRDSVSAKEFSLRLVCPTGNIGGVIGKGGSVIKQIRQESGAFIKVDSSAAEADDCIISIS 146
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E+ + ++ SE S +G + T RLL+ S+ GCLIG
Sbjct: 147 SKEF------FEDPISPTIDAAVRLQPKCSEKSDRESGD-STFTTRLLVPTSRIGCLIGK 199
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL+ LP AS E D +VQI+GD+ NAL+++ +L+ N
Sbjct: 200 GGSIISEMRKVTKANIRILSKENLPKVAS--EDDEMVQITGDLDVARNALIQVTTRLKTN 257
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 13/176 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D +FR+IVP ++G +IG++G I+K+ EET+A IK+ D +R+++IS K+ +
Sbjct: 73 DCVFRMIVPVSKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L DDD A A ++RLL+A +QA LIG G
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGS------AFCSVRLLVASTQAINLIGKQGS 186
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
I+ + +SGA++ IL+ + P A+ E R+V + G+ +L AL I LR+
Sbjct: 187 LIKSIVENSGASVRILSEEETPFYAAQDE--RIVDLQGEALKILKALEAIVGHLRK 240
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 7/189 (3%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
ED + G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 169 EDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPG 228
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIA 150
ER +++S K+ ++ + + + L ++ I+ D + EAS+ + + RLL+
Sbjct: 229 TTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQAPP--PSKVSTRLLVP 284
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +V AL
Sbjct: 285 ASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTSVHRAL 342
Query: 211 VEIGNQLRE 219
I + LR+
Sbjct: 343 ELIASHLRK 351
>gi|242055819|ref|XP_002457055.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
gi|241929030|gb|EES02175.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
Length = 716
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ P ++G +IGK G+ ++ I+++T IK+ D + + E+R+I IS + + +S
Sbjct: 390 FRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVLDTVPKSEDRIISISGPAHPSDGISP 449
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+NA+ + I+ E + RL+++ +Q GC++G G I ++R
Sbjct: 450 AQNAILHVQRKIMLPTSDKKEGPAIC---------RLIVSANQVGCVLGKGGSIIAEMRK 500
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SGA I++L+ +++P H D VVQISG A+ AL++I +LR +
Sbjct: 501 LSGAFIIVLSKDKIPRGVPEH--DEVVQISGSCEAIQEALMQITARLRNH 548
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 75 IREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
IREE + K D + + V ++ + + V+ A A+ + I D+N +
Sbjct: 178 IREEKDHSEKEHDKEEKDDPFVAKVAESEPERVIPSALKAISLVFDRIFAAGDNNETGNA 237
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
AA ++RLL+ SQAG L+G G I+++ +G I +L N LP CA + D
Sbjct: 238 SAAS--TPVSLRLLVLYSQAGWLLGKGGSVIKQMSADNGCEIRVLRDN-LPSCALLN--D 292
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++ QI+G++ +V L + L +PP++
Sbjct: 293 KLCQITGEIDSVRKGLNAVSELLLAHPPKET 323
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
FRI+ P+ + G VIGK G I KIREET+ I++ A +ERVI I++ D D S
Sbjct: 46 FFRILCPASKSGNVIGKGGAIIAKIREETRMRIRVDRAAPGCDERVIFITAVDKDEEAS 104
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 7/189 (3%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
ED + G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 169 EDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPG 228
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIA 150
ER +++S K+ ++ + + + L ++ I+ D + EAS+ + + RLL+
Sbjct: 229 TTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQAPP--PSKVSTRLLVP 284
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +V AL
Sbjct: 285 ASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTSVHRAL 342
Query: 211 VEIGNQLRE 219
I + LR+
Sbjct: 343 ELIASHLRK 351
>gi|147863214|emb|CAN78372.1| hypothetical protein VITISV_006585 [Vitis vinifera]
Length = 807
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 18/179 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
++V+F+++ ++G +IGK G I+ ++ ET A+IKIADA +ERV++IS+++ +
Sbjct: 422 EEVVFKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKIADAAPDSDERVVVISAREACTL 481
Query: 108 V------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A++A+ ++ I +++ AA RLL+ Q GCL+G
Sbjct: 482 TNXEQKHSPAQDAVIRVHCRI----------AEIGFEPGAAVVARLLVHSQQIGCLLGKG 531
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R ++GA+I I A Q+P C S ++D +VQ+ G + +V +AL I +++RE
Sbjct: 532 GIIISEMRRATGASIRIFAKEQVPKCGS--QNDELVQVIGSLQSVQDALFCITSRIRET 588
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 39/191 (20%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 52 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 110
Query: 100 SSKDNDNVVSDAE-NALQQIAAL-------ILKDDDSNSEASKVAA-------------- 137
SK + + AE N ++ A L + DDD +S A +
Sbjct: 111 KSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 170
Query: 138 --------GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 171 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 229
Query: 190 AHESDRVVQIS 200
D ++Q S
Sbjct: 230 --PGDELIQGS 238
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V FR++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ +
Sbjct: 128 VFFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKEEPDSSL 187
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A + L ++ I+ D ++S + G + RLL+A SQAG LIG G ++ +
Sbjct: 188 PPAMDGLLKVHKRIV--DGLEGDSSHMPPG--GKVSTRLLVAASQAGSLIGKQGGTVKSI 243
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ +S + +L LP+ A + DRVV++ G+ V A+ I + LR+
Sbjct: 244 QEASNCIVRVLGAEDLPIFAL--QDDRVVEVVGEPIGVHKAVELIASHLRK 292
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP++++G +IG++G I+KI EET+A +KI D +R ++IS+K+ + V
Sbjct: 45 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSSVP 104
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L +I I+ D S+ + +G + +LL+ SQAG LIG G ++ ++
Sbjct: 105 PAVDGLLRIHKRII--DGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 162
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L LP+ A + DRVV++ GD V AL I + LR+
Sbjct: 163 EASNCIVRVLGAEDLPIFAL--QDDRVVEVVGDPAGVHKALELIASHLRK 210
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAG-HVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A +AL ++ + D +E ++ AA V A RLL+ G+QA LIG G I+
Sbjct: 105 LPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAA--RLLVPGAQAINLIGKQGATIK 162
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 163 AIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAG-HVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A +AL ++ + D +E ++ AA V A RLL+ G+QA LIG G I+
Sbjct: 105 LPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAA--RLLVPGAQAINLIGKQGATIK 162
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 163 AIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP++++G +IG++G I+KI EET+A +KI D +R ++IS+K+ + V
Sbjct: 48 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSSVP 107
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ + +G + +LL+ SQAG LIG G ++ ++
Sbjct: 108 PAVDGLLRVHKRII--DGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 165
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L LP+ A + DRVV++ GD V AL I + LR+
Sbjct: 166 EASNCIVRVLGAEDLPIFAL--QDDRVVEVVGDPTGVHKALELIASHLRK 213
>gi|124359392|gb|ABN05856.1| KH, type 1 [Medicago truncatula]
Length = 564
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q++ F+II + +IG VIGK G+ I+ ++ ET AT+ + ++A E+R+I I++ +
Sbjct: 123 KAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASE 182
Query: 104 N-DNVVSDAENAL-----QQIAALILKDDDSN-SEASKVAAGHVAANTIRLLIAGSQAGC 156
+ ++ S A+ A + + A I K DS + S V A +L+++ +Q GC
Sbjct: 183 SPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTA--------QLVVSSNQVGC 234
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
L+G G + ++R ++GA+I I+ +++ CAS ++D+VVQISG+ V +AL +
Sbjct: 235 LLGKGGVIVSEMRKATGASIRIVGTDKVSKCAS--DNDQVVQISGEFSNVQDALYNATGR 292
Query: 217 LREN 220
LR+N
Sbjct: 293 LRDN 296
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 110/196 (56%), Gaps = 7/196 (3%)
Query: 26 SGKRRREDGEIEGSDPKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
S ++R + +++G + K+ + +FR++VP +++G +IG++G I+KI E+TKA IK
Sbjct: 137 SEEKRGPEEDLKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEDTKARIK 196
Query: 85 IADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
I D ER +++S+K+ D + A + L ++ ++ D +++ A+G V
Sbjct: 197 ILDGPPGTSERAVMVSAKEEPDCSIPPAVDGLLRVHKQVVNVDPHPADS---ASGAVRPV 253
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
RLL+A +QAG LIG G I+ ++++G I IL LP+ A D +V+I G+
Sbjct: 254 VTRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRILGSEHLPVFAL--RDDSIVEIQGES 311
Query: 204 PAVLNALVEIGNQLRE 219
V A+ + LR+
Sbjct: 312 SGVHKAVELVAIHLRK 327
>gi|357445989|ref|XP_003593272.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482320|gb|AES63523.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 766
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q++ F+II + +IG VIGK G+ I+ ++ ET AT+ + ++A E+R+I I++ +
Sbjct: 325 KAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASE 384
Query: 104 N-DNVVSDAENAL-----QQIAALILKDDDSN-SEASKVAAGHVAANTIRLLIAGSQAGC 156
+ ++ S A+ A + + A I K DS + S V A +L+++ +Q GC
Sbjct: 385 SPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTA--------QLVVSSNQVGC 436
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
L+G G + ++R ++GA+I I+ +++ CAS ++D+VVQISG+ V +AL +
Sbjct: 437 LLGKGGVIVSEMRKATGASIRIVGTDKVSKCAS--DNDQVVQISGEFSNVQDALYNATGR 494
Query: 217 LREN 220
LR+N
Sbjct: 495 LRDN 498
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 22/188 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------- 99
A V FR++ S +IG VIGK G I+ ++ T A I+I D+ +RVI++
Sbjct: 45 AGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNID 104
Query: 100 -------SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
S D + + VS A+ AL ++ IL + +E + G + RL+
Sbjct: 105 GKVMVRSHSGDGEAIEVSKAQEALLRVFDRIL---EVAAEMEGIELGDRTV-SCRLVADS 160
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+QAG +IG G+ +EK++ +G I + N LP C S+ D V++I G V +V ALV
Sbjct: 161 AQAGSVIGKGGKVVEKIKKDTGCKIWVCKDN-LPACISS--PDEVIEIEGSVSSVKKALV 217
Query: 212 EIGNQLRE 219
+ L++
Sbjct: 218 AVSRNLQD 225
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 109/194 (56%), Gaps = 8/194 (4%)
Query: 28 KRRREDGEIEGSDPKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
K E+G G + KR + +FR++VP++++G +IG++G I+KI EET+A IKI
Sbjct: 155 KSESEEGATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 214
Query: 87 DAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D ER +++S K+ ++ + + + L ++ I+ D + E S+ A + +
Sbjct: 215 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEPSQ--APPASKVST 270
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+ SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +
Sbjct: 271 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTS 328
Query: 206 VLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 329 VHKALELIASHLRK 342
>gi|224123476|ref|XP_002319087.1| predicted protein [Populus trichocarpa]
gi|222857463|gb|EEE95010.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAE 112
++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ + A
Sbjct: 1 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSSLPPAM 60
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L ++ I+ DS+S + +G A + RLL+ SQAG LIG G ++ ++ +S
Sbjct: 61 DGLLRVHKRIIDGLDSDSSNTPPTSG--AKVSTRLLVPASQAGSLIGKQGGTVKSIQEAS 118
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ +L LP+ A + DRVV++ G+ V A+ I + LR+
Sbjct: 119 TCIVRVLGAEDLPVFAL--QDDRVVEVLGEAAGVHKAVELIASHLRK 163
>gi|147789387|emb|CAN73316.1| hypothetical protein VITISV_043333 [Vitis vinifera]
Length = 511
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 39/233 (16%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ S P R K D ++R + P ++IG +I + +++ R +TK I I D ++ EE
Sbjct: 280 VSSSSPTSRLK--DTIYRYLCPGKKIGSIIRRGWKIVKQQRVDTKPKISIGDTVSGCEEH 337
Query: 96 VIIISS-------KDNDN-VVSDAENALQQIAALILKDD--DSNSEASKVAAGHVAANTI 145
V+ I + DN N VS +N L ++ ++ D+ D N E +
Sbjct: 338 VVTIYNFSIESNVFDNSNTFVSPTQNVLFRVHDRVISDEVHDENFEEA------------ 385
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
SQ GC+IG GQ I+ +R+ SGA I IL + LP + SD+++QISG+
Sbjct: 386 ------SQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLP--SRVLSSDKLIQISGEPSL 437
Query: 206 VLNALVEIGNQLRENPPRQ---VISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
V+ AL +I ++L +NP + ++ P YS+ + PTS P++ L
Sbjct: 438 VMKALYQIASRLHDNPSQSQHLLVXTMPT-GYSS---GGSLMGPTSSAPIMGL 486
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D ++R+IVP ++G +IG++G I+K+ ET+A I+I D +R+++IS K+ +
Sbjct: 26 DNVYRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLISGKEEPEAA 85
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + ++A A A ++++LL+A SQA LIG G I+
Sbjct: 86 LSPAMDAVLRVFKRVSGLSAGEADAMGSAVAGAAFSSVKLLVASSQAINLIGKQGSTIKS 145
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ AT+ +LA + P A++ E R+V+I G+ VL AL + QLR+
Sbjct: 146 IQESTAATVRVLAEEEAPSYATSDE--RIVEIHGEASKVLKALEGVIGQLRK 195
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
++D ++R + P ++ G +IGK G ++IR ETK+ ++I +A+ EERV+ + S
Sbjct: 16 SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 75
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCL 157
D+ +V A +AL ++ +++ D D + G T+R+L+ Q GC+
Sbjct: 76 NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCV 135
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG GQ I+ LRN + A I ++ + LP CA D ++ I G+ V AL ++ + L
Sbjct: 136 IGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 194
Query: 218 RENPPR 223
+NP R
Sbjct: 195 HDNPSR 200
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 239 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 298
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 299 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 347
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 348 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 404
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
D ++R + P ++ G +IGK G ++IR ETK+ ++I +A+ EERV+ + S
Sbjct: 9 HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCLI 158
D+ +V A +AL ++ +++ D D + G T+R+L+ Q GC+I
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ I+ LRN + A I ++ + LP CA D ++ I G+ V AL ++ + L
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLH 187
Query: 219 ENPPR 223
+NP R
Sbjct: 188 DNPSR 192
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 231 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 290
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 291 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 339
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 340 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 396
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 112/182 (61%), Gaps = 6/182 (3%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ EET++ I++ DA +R+++
Sbjct: 41 PEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVL 100
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S K+ + +S A +A+ +I + ++++E + AAG +A +IRLL+A +QA L
Sbjct: 101 VSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAG-LAFCSIRLLVASTQAINL 159
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ ++ A++ +L+ +++ A+ E R+V+I G+ VL AL + L
Sbjct: 160 IGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDE--RIVEIQGEALKVLKALEAVVGHL 217
Query: 218 RE 219
R+
Sbjct: 218 RK 219
>gi|242045198|ref|XP_002460470.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
gi|241923847|gb|EER96991.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
Length = 371
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 25/210 (11%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV-SDAE 112
+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ IS+++N +++ S A+
Sbjct: 1 MIILNEMVGSIIGKGGSTIRALQSETGACIKILELVADSDERVVAISARENSDMMHSPAQ 60
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+A+ ++ + I SEAS + A RLL+ GCL+G G I ++R +
Sbjct: 61 DAVVRVYSRI-------SEASMDRSSPTPA---RLLVPSQHIGCLLGKGGSIITEMRKIT 110
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE-----------NP 221
GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+ P
Sbjct: 111 GASIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSGGMP 168
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSGQP 251
P + P + S P P + P+ G P
Sbjct: 169 PYPPVGNIPVHQ-SRQEPPPPHLHPSGGMP 197
>gi|12597878|gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|31433543|gb|AAP55041.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|125532979|gb|EAY79544.1| hypothetical protein OsI_34673 [Oryza sativa Indica Group]
gi|125575714|gb|EAZ16998.1| hypothetical protein OsJ_32483 [Oryza sativa Japonica Group]
gi|215769329|dbj|BAH01558.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 458
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ + ER++++S K++ +
Sbjct: 55 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVSGKEDPALE 114
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + D +E ++ A G AA RLL+ G+QA LIG G +I
Sbjct: 115 LPPAMDALMRVFKRVSGITDGAAEGTQAATAPGVCAA---RLLVPGAQAINLIGKQGASI 171
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ +GATI +++ ++ E +R+V+I G+ VL AL + N LR+
Sbjct: 172 KAIQEGTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHLRK 225
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 90.5 bits (223), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR+++P +++G +IG++G I+K+ EETKA IKI D ER +++S+K+ D ++
Sbjct: 41 VFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAPIA 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ A V+ RLL+ +QAG LIG G I+ ++
Sbjct: 101 PAIDGLLRVHKCIM---DVESDVPSAAGVMVST---RLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L N LPL A ++D VV+I G+ +V A+ I + LR+
Sbjct: 155 EASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASVHKAVELIASNLRK 201
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ D ERV+++S K+ +
Sbjct: 46 DSVFRMVVPVXKVGSIIGRKGELIKRLVEETKARVRVLDGPVGATERVVLVSGKEEPGLD 105
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A +AL ++ + D ++++ A RLL+ G+QA LIG G +I+
Sbjct: 106 LPPAMDALIRVFKRVNGITDVAADSTTQTAAPPGVCAARLLVPGAQAINLIGKQGASIKA 165
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ +GATI +++ ++ + +R+V+I G+ VL AL + N LR+
Sbjct: 166 IQEGTGATIRVISIDERERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRK 217
>gi|42573788|ref|NP_974990.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010500|gb|AED97883.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 824
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 510 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++ +
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 624 KNSLAKSSSAL-TTERFYDRQSDNPL 648
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|9759415|dbj|BAB09870.1| unnamed protein product [Arabidopsis thaliana]
Length = 833
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 510 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++ +
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 624 KNSLAKSSSAL-TTERFYDRQSDNPL 648
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|334188619|ref|NP_001190612.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010502|gb|AED97885.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 866
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 510 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++ +
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 624 KNSLAKSSSAL-TTERFYDRQSDNPL 648
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 34/211 (16%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DGE+ P++R++ D R+++PS+ G +IGK G I K+R + KA+I + D
Sbjct: 2 KREADGEM--GSPQKRSRRGDEEVRLLIPSKVAGSIIGKGGQNITKLRSQYKASITVPDC 59
Query: 89 IARHEERVIIISSKDND---NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-- 143
ER++ +SS D D N+V+D L++ G V N
Sbjct: 60 PG--PERMLTLSS-DLDTICNIVTDVVPNLEE------------------NGGRVNGNEL 98
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+R++I SQAGC+IG +G I++LR +GA I I + + +DR++QI G+
Sbjct: 99 DLRMMIHQSQAGCVIGKAGYKIKELREKTGARIKIFS------NVAPQSTDRIIQIVGEP 152
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++++ EI ++ NP + +++ +NY
Sbjct: 153 SKCVDSIREIITLIKSNPIKGIVNPYDPHNY 183
>gi|22328051|ref|NP_201244.2| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010501|gb|AED97884.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 857
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 510 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 565
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++ +
Sbjct: 566 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 624 KNSLAKSSSAL-TTERFYDRQSDNPL 648
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|218192926|gb|EEC75353.1| hypothetical protein OsI_11789 [Oryza sativa Indica Group]
Length = 478
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 13/157 (8%)
Query: 75 IREETKATIKIADAIARHEERVI-IISSKDNDNVVSDAEN-------ALQQIAALILKDD 126
+R +T+A I+I ++++ +ERVI I SS N + DAE+ AL ++ + DD
Sbjct: 1 MRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDD 60
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
D +E S V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP
Sbjct: 61 DIGNEESDEGLAQV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPA 117
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
CA + D ++QISGD V AL+++ ++L +NP R
Sbjct: 118 CAIS--GDELLQISGDSTVVRKALLQVSSRLHDNPSR 152
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)
Query: 34 GEIEGSDP------KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
G++ G P + + A++ R++ + +G VIGK G I++IR+E+ A IK+ D
Sbjct: 194 GDVAGDWPSIYQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKV-D 252
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ ++ +I +S+K+ ++ VS NA + + D S + + T R
Sbjct: 253 SSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA--------IPSYTTR 304
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E + +VQISGD+ V
Sbjct: 305 LLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--EDEEMVQISGDLDVV 362
Query: 207 LNALVEIGNQLREN 220
+AL++I +L+ N
Sbjct: 363 RHALLQITTRLKAN 376
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
V R++VPS QIG +IGK GH IQ IR +T A I++
Sbjct: 74 VTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRV 109
>gi|255537898|ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 679
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 120/210 (57%), Gaps = 12/210 (5%)
Query: 37 EGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
EG P R A D+L FR++ ++G VIGK G I+ +++ET IK+ + ++ E+R
Sbjct: 307 EGGMPGRMRPAPDMLTFRLLCLDEKVGGVIGKGGAIIKTLQQETGCEIKVLEGVSDSEDR 366
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
+I+IS + D+ +S A++A+ ++ I + A + G A RLL++ +Q
Sbjct: 367 IILISGPAHPDDRISAAQDAVLRVQTRIAR-------ALPLPEGKEKAVIGRLLVSSNQI 419
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G + ++R S+GA I IL +Q+P CAS E++ VVQI+G+ V AL++I
Sbjct: 420 GCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCAS--ENEEVVQINGEHEVVQEALLQIT 477
Query: 215 NQLRENPPRQVI-SISPAYNYSAIRPAQPF 243
+LR + R V SI N + + A PF
Sbjct: 478 TRLRNHFFRDVFPSIDHPSNPAFLDQAPPF 507
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 62/236 (26%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-KDNDNVV 108
V+FRI+ P+ + G +IGK G I +IR+ET A +++ + + +ERV+II++ D + V
Sbjct: 36 VVFRILCPASKTGGIIGKGGAIISQIRQETGAKVRVEETVPGSDERVVIIAAGSDKEMEV 95
Query: 109 SDAE----------------------------------------------NALQQIAALI 122
++AE ++LQ+ L+
Sbjct: 96 NNAEQNRGDSDDKEPNVGEESNGKQAGSDEDDENKETVSVEHSTKSVRETSSLQKALVLV 155
Query: 123 LKD--------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ D+ N E K + +T+RLL+ SQ GCL+G G I+++ SGA
Sbjct: 156 FERMLEAEPEMDEGNEEKKKPSM-----STLRLLVLSSQVGCLLGKGGSVIKQMSAESGA 210
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP 230
I IL ++LP+CAS +D +VQI+G+V A+ AL + QL ENPP+ + P
Sbjct: 211 QIRILPRDKLPICASP--TDELVQIAGEVDAIRKALQSVAQQLLENPPKDPEAYPP 264
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 12/193 (6%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
K+ DG G K + +FR+++P +++G +IG++G I+K+ EETKA IKI D
Sbjct: 20 KQGLNDGS--GGGEKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILD 77
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER +++S+K+ D ++ A + L ++ I+ + A+ V + R
Sbjct: 78 GPPGTSERAVMVSAKEEPDAPIAPAIDGLLRVHKCIMDVESDVPSAAGVMV------STR 131
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL+ +QAG LIG G I+ ++ +S + +L N LPL A ++D VV+I G+ +V
Sbjct: 132 LLVVAAQAGSLIGKQGATIKSIQEASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASV 188
Query: 207 LNALVEIGNQLRE 219
A+ I + LR+
Sbjct: 189 HKAVELIASNLRK 201
>gi|28261403|gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + +A+ EER+I +++ +N
Sbjct: 462 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPEC 521
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 522 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 577
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+ + P V A+ I ++LR++ +
Sbjct: 578 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSM 635
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 636 KNSLAKSSSAL-TTERFYDRQSDNPL 660
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|28261405|gb|AAO37829.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 836
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 8/206 (3%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + +A+ EER+I +++ +N
Sbjct: 462 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPEC 521
Query: 108 VSD-AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ I + + + + + G ++ T RL++ SQ GC++G G +
Sbjct: 522 QSSPAQKAIMLIFSRLFE----LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVS 577
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R ++GA I IL Q P C S E+D+VVQI+ + P V A+ I ++LR++ +
Sbjct: 578 EMRKTTGAAIQILKVEQNPKCIS--ENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSM 635
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPL 252
S A + SA+ + F + S PL
Sbjct: 636 KNSLAKSSSAL-TTERFYDRQSDNPL 660
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
>gi|224077694|ref|XP_002305366.1| predicted protein [Populus trichocarpa]
gi|222848330|gb|EEE85877.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 18/215 (8%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ + + ++ +I
Sbjct: 20 SAPRDELASKEFSLRMVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSASEGDDCLIT 79
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ + D + + AAL L+ SE + +G + + T RLL+ S GCL+
Sbjct: 80 ISAKE----ICDDQYSPTIEAALRLQ--PRCSEKMERDSG-LFSFTTRLLVPSSHIGCLL 132
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+++R + A I I ++LP +A + D +VQISGD+ +AL++I +LR
Sbjct: 133 GKGGLIIDEMRKLTKAIIRIPRKDKLP--KTALDDDEMVQISGDLDIAKDALIQISRRLR 190
Query: 219 ENP-PRQVISISPAYNYSAIRPAQPFVEPTSGQPL 252
N R+ + SAI P P++ P S + L
Sbjct: 191 ANAFDREGL-------MSAILPVFPYL-PVSAEGL 217
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR+++P +++G +IG++G I+K+ EETKA IKI D ER +++S+K+ D ++
Sbjct: 41 VFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAPIA 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ A V+ RLL+ +QAG LIG G I+ ++
Sbjct: 101 PAIDGLLRVHKCIM---DVESDVPSAAGVMVST---RLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L N LPL A ++D VV+I G+ +V A+ I + LR+
Sbjct: 155 EASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASVHKAVELIASNLRK 201
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FR++V ++++G +IG++G I+++ +E+KA IKI D ER ++I
Sbjct: 110 DTKWPGWPGESVFRVLVSTQKVGALIGRKGEFIKRMCDESKARIKILDGPPGVPERAVMI 169
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D +V A + L ++ I D +SE + G A RLL+ SQAG LI
Sbjct: 170 SAKDEPDALVPPAIDVLLRVHNRIT--DGLDSETDQAQKGASPAGPTRLLVPASQAGSLI 227
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + IL N P+ A DRVV+I G+ V A+ I N LR
Sbjct: 228 GKQGTTIKSIQDASKCALRILE-NVPPV---ALNDDRVVEIQGEPHDVHKAVELIANHLR 283
Query: 219 E 219
+
Sbjct: 284 K 284
>gi|356496890|ref|XP_003517298.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 602
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 25/225 (11%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
E S+ + +V+FR++ + G VIGK G ++ + +T A+I A ++ H ER+
Sbjct: 269 ETSNRDSKGAEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERI 328
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN------TIRLLI 149
+ IS+ ++ ++ S A++A+ + A I++D + G + + T RLL+
Sbjct: 329 VTISAVESLESCNSPAQDAVILVFARIIED--------HIGKGFLQVSSMESPVTARLLV 380
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
A S C G GQ I +LR +GA I IL +P AS + D VVQI+G+ V NA
Sbjct: 381 ATSTVNCFSGNEGQVISELREVTGADIQILHGESVPNGAS--DEDVVVQITGEYRCVQNA 438
Query: 210 LVEIGNQLREN-PPRQVISIS-PAYNYSAIRPAQPFVEPTSGQPL 252
L +I +++R+N P +V++ + P N+ + +P G+P
Sbjct: 439 LYKITSRIRDNLSPNEVVAEARPKSNWKVNK------DPIKGKPF 477
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 20/185 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------- 102
+ FR++ + +G +IG G + ++R ET I D+++ E+RVI++
Sbjct: 41 IAFRLVCHASTVGGLIGSSGSIVSQLRRETGCKIHCEDSLSSAEDRVILVIGSLSPRKGL 100
Query: 103 ---DNDNV-VSDAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
D V VS A+ A+ ++ + + + +++ G V + +LL SQ G +
Sbjct: 101 LLGDGGEVEVSSAQEAVVRVFERVWDLEAEKGVNSNRAVNGEVFS---KLLAHTSQIGAV 157
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+G G+NI +RN++GA I + P P CA+ E +VQI+G + AV AL+ + + L
Sbjct: 158 VGKGGKNITAIRNNTGAKIRVFPP---PQCATKDE--ELVQITGGILAVKKALISVSHCL 212
Query: 218 RENPP 222
++ PP
Sbjct: 213 QDCPP 217
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 53/217 (24%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA--- 86
R D E E RA +V +++ + QIG V+GK G I IR T A I++
Sbjct: 123 RVWDLEAEKGVNSNRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNNTGAKIRVFPPP 182
Query: 87 DAIARHEERVII-----------------------------------------ISSKDND 105
+ EE V I +SS N
Sbjct: 183 QCATKDEELVQITGGILAVKKALISVSHCLQDCPPLCKVPVTSSTPTVSSSDRLSSDPNA 242
Query: 106 NVVSDAENALQQIAALIL--KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ + L + L + + +SN +++ + G RLL + + AG +IG G
Sbjct: 243 ELFPHLNSLLTSMEGLSIYERTTNSNETSNRDSKGAEHEVVFRLLCSNNVAGSVIGKRGA 302
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+ L + +GA+I+ AP S H ++R+V IS
Sbjct: 303 IVRALESKTGASIIFAAP------LSEH-AERIVTIS 332
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ + ER++++S+K++ +
Sbjct: 50 DNVFRMVVPVLKVGSIIGRKGELIKRLVEETKARVRVLEGPVGATERIVLVSAKEDPGLE 109
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + D +E ++ +A G AA RL++ G+QA LIG G +I
Sbjct: 110 LPPAMDALIRVFKRVNGISDGAAEGTQTSAAPGVCAA---RLVVPGAQAINLIGKQGASI 166
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ +GATI +++ ++ + +R+V+I G+ VL AL + N LR+
Sbjct: 167 KAIQEGTGATIRVISVDERDRPFYVTDDERIVEIQGETEKVLKALQAVSNHLRK 220
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FRI+VP++++G VIG++G I+K+ EE++A IK+ D +R ++IS+KD D +
Sbjct: 116 VFRILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRAVMISAKDEPDAPLP 175
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I D S+ + AAG V RLL+ SQAG LIG G I+ ++
Sbjct: 176 PAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPT--RLLVPASQAGSLIGKQGATIKSIQ 233
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++S + IL +P A + DRVV+I G+ V A+ I + LR+
Sbjct: 234 DASKCVLRIL--ESVPPVALS--DDRVVEIQGEPLDVHKAVELIASHLRK 279
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG SD +RA R++VP+ Q G +IGK+G I+ I++ +K ++I ++
Sbjct: 186 KRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRILES 245
Query: 89 ---IARHEERVIIISSKDND 105
+A ++RV+ I + D
Sbjct: 246 VPPVALSDDRVVEIQGEPLD 265
>gi|255584811|ref|XP_002533123.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223527086|gb|EEF29268.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 405
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 12/215 (5%)
Query: 9 VNPTVSVVTEPEPRHDVSGKRRREDGEIE---GSDPKRRAKAQDVLFRIIVPSRQIGKVI 65
+ PT + + P G + + G+ S P+ +++ RI+ P+ IG VI
Sbjct: 111 IGPTGAPIVGIAPLMSTYGGYKGDAGDWSRSLYSAPRDELSSKEFSLRIVCPTGNIGGVI 170
Query: 66 GKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
GK G I +IR+E+ A IK+ + A ++ +I +S+K+ D + + AA+ L+
Sbjct: 171 GKGGTIINQIRQESGAVIKVDSSTAEGDDCLITVSAKE----FFDDQYSPTIEAAIRLQP 226
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
S A + + T RLL+ S+ GCL+G G I ++R + A I IL + LP
Sbjct: 227 RCSEKIARDSG---LISFTTRLLVPTSRIGCLLGKGGVIINEMRKVTKANIRILGKDNLP 283
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
AS E D +VQISGD+ +AL + +LR N
Sbjct: 284 KVAS--EDDEMVQISGDLDVAKDALTHVSRRLRAN 316
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
DDDS GH T RL++ Q GC+IG GQ ++ +R+ +GA I IL L
Sbjct: 4 DDDSE-------GGHQV--TARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHL 54
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
P CA + +D +VQISG+V V AL +I +L ENP R
Sbjct: 55 PPCALS--TDELVQISGEVAVVKKALYQIATRLHENPSR 91
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
V R+IVPS QIG +IGK G +Q IR ET A I+I
Sbjct: 10 GHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRI 48
>gi|412992928|emb|CCO16461.1| predicted protein [Bathycoccus prasinos]
Length = 703
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 109/188 (57%), Gaps = 11/188 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIII 99
P+ + +L+R++ P+ + G VIGK G ++++++ ++ A IK+ + + ERVI I
Sbjct: 256 PENHGATRTLLYRLLCPNARAGSVIGKNGEKVKQLQRDSGAKIKVEPPVDSTIAERVIAI 315
Query: 100 SSKDNDN--VVSDAENALQQIAALILKDDDSNSE--ASKVAAGHVAANTIRLLIAGSQAG 155
++D D+ V + ++ AL +I I+ D + N+ A++ GH+ IRLL+ SQ
Sbjct: 316 EAQDVDDPTVWAPSQIALLRIVETIVLDAERNTTIGAAEENNGHI---VIRLLLPSSQIR 372
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-VPAVLNALVEIG 214
+IG G IE++R SG+ + +L ++ P CA +D V+QIS + + V +AL I
Sbjct: 373 NVIGRFGNVIERIRVGSGSHVRVLPSSETPRCAK--RNDEVLQISAESMENVASALAMIT 430
Query: 215 NQLRENPP 222
QLR +PP
Sbjct: 431 TQLRLDPP 438
>gi|356519471|ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 591
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 15/217 (6%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R V FR++ + ++G +IGK G I+ ++E T A I+I DA +RVI++S+
Sbjct: 17 RSRPYTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSPDRVILVSA 76
Query: 102 KDNDNVVSDAENALQQIAALILKDD--DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
SD E + Q+A L + D D +E + G + RLL SQ G +IG
Sbjct: 77 PA---AASDGEVSTAQVALLKVFDRVLDVAAETAGTEVGDRVV-SCRLLADTSQVGAVIG 132
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G+ +EK+R +G I +L LP C + SD +V++ G + +V ALV + L++
Sbjct: 133 KAGKVVEKIRMDTGCKIRVLNEG-LPACTA--PSDEIVEVEGQLTSVKKALVAVSGCLQD 189
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSGQPLLQLT 256
PP ++ + +Y +R T PL LT
Sbjct: 190 CPPPDRTKMTGSRHYEVVR------SETCSVPLESLT 220
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK A Q+V FRII + ++G VIGK G ++ ++ E+ A I ++ E+R++ I
Sbjct: 262 DPK--ALQQEVTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTI 319
Query: 100 SSKDND--NVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
++ + + + S A+ A+ + + A + K D S+ T +L++ +
Sbjct: 320 TASEQNPESRYSPAQKAVVLVFSKSVEAGVEKGLDMGSKKESYV-------TAQLVVPSN 372
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q GCL+G G + ++R ++GA I ++ +++P C S ++D++VQISG+ V A+
Sbjct: 373 QVGCLLGKGGAIVSEMRKATGANIRVIGNDKVPKCVS--DNDQLVQISGEFSNVQAAIYN 430
Query: 213 IGNQLREN 220
+LR+N
Sbjct: 431 ATGRLRDN 438
>gi|255551350|ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 537
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PSR+IG VIGK G I+ +REET+A I +AD + +ERVIII S
Sbjct: 44 DTVYRILCPSRKIGGVIGKGGGIIKGLREETQAKITVADPVPGSDERVIIIYSSPEKISR 103
Query: 102 --KDNDNVVSD-----------AENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
D++++ + A++AL ++ I+++D D ++E V A
Sbjct: 104 NHNDHEDLTMENEQDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSDDDNENGFVTA---- 159
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
RLL+ + GCL+G G I++LR+ +GA I +L + LP CA + +D +VQIS
Sbjct: 160 ----RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADHLPTCAMS--TDELVQISA 213
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 214 KPDVAKKALYEVSTLLHQNP 233
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 13/147 (8%)
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
++ ++++T A+I + DA A +ERVI +S+ + N Q IL+ + S+
Sbjct: 335 VKVVQQDTGASIHVEDASAESDERVIRVSASEA------LWNPRSQTIDAILQLQNKTSD 388
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
S+ G + T RLL+ S+ GC++G GQ I ++R + A I + + ++ P CAS
Sbjct: 389 FSE--KGTI---TTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKDEKPKCAS-- 441
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLR 218
E + +VQISG +AL EI ++LR
Sbjct: 442 EDEELVQISGKFGVAKDALAEIASRLR 468
>gi|359488265|ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
gi|296087281|emb|CBI33655.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PS++IG VIGK G ++ +REET+A I +AD++ +ERVIII S
Sbjct: 44 DTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPK 103
Query: 102 -------------KDNDNVVSDAENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
+D+ A++AL ++ I+++D + ++E + V
Sbjct: 104 EHDSNEDPEMEEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV------ 157
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
T RLL+ + GCL+G G I++LR+ +GA I +L LP CA + SD +VQISG
Sbjct: 158 --TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMS--SDELVQISG 213
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 214 KPAVAKKALYEVSTLLHQNP 233
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+ +I+ P+ +IG VIGK G ++++++ET A+I + DA+A EERVI +SS
Sbjct: 313 EFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSS------F 366
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
N Q IL+ + SE S T RLL+ S+ GC++G G I ++
Sbjct: 367 EALWNPRSQTIEAILQLQNKTSEYSD-----KGGMTTRLLVPSSKVGCILGQGGHVINEM 421
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
R + A I + + P CAS + + +VQISG+ +AL EI ++LR
Sbjct: 422 RRRTQADIRVYSKEDKPKCAS--DDEELVQISGNFGVAKDALAEIASRLR 469
>gi|118485588|gb|ABK94645.1| unknown [Populus trichocarpa]
Length = 294
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 22/209 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ ++A ++ +I
Sbjct: 20 SAPRDELASKEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLIT 79
Query: 99 ISSK---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS+K D+ + +A LQ + ++ D + + T RLL+ S+ G
Sbjct: 80 ISAKEIYDHYSPTIEAAVRLQPRCSEKMERDSG-----------LISFTTRLLVPSSRIG 128
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
CL+G G I+++R + A I I LP AS + D +VQI+GD+ +AL++I
Sbjct: 129 CLLGKGGAIIDEMRKLTKAIIRIPRKENLPKVAS--DDDEMVQIAGDLDVAKDALIQISR 186
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFV 244
+LR N V A SAI P P++
Sbjct: 187 RLRAN----VFDREGA--MSAILPVLPYL 209
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 18 EPEPR-----HDVSGKRRREDGEIEGSD----PKRRAKAQDVLFRIIVPSRQIGKVIGKE 68
EP PR H + R R I G + R A +DV+FR++ ++G +IGK
Sbjct: 303 EPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKG 362
Query: 69 GHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDD 127
G ++ ++ ET A+IKI D +ER+++IS+++ + S A+ A+ + I
Sbjct: 363 GTVVRALQNETGASIKIVDT-PDLDERLVVISARETLEQTYSPAQEAVIRAHCRI----- 416
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL--- 184
+++ AA RLL+ G Q G L+G G I +R +G +I I +Q+
Sbjct: 417 -----AEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNG 471
Query: 185 -PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P+ SD VVQ+ G++P+V +AL I N++R+
Sbjct: 472 GPM------SDEVVQVIGNLPSVQDALFHITNRIRD 501
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 54/218 (24%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--------- 99
D LFR++ P+ ++ ++ + +R+ A I + + + EE V++I
Sbjct: 67 DTLFRLLCPASKVSSIL-------RHLRDIPGARIHVDEPLPSCEECVLVILAGSPSKPT 119
Query: 100 -SSKDND----------NVVSD-----------AENALQQIAALILK---DDDSNSEASK 134
++ ND NV SD A+ AL + I++ D N E K
Sbjct: 120 HTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGENQEIQK 179
Query: 135 VAAGHVAANTI-----------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
A + I RLL Q G ++G G+ +EK+R S A + I +Q
Sbjct: 180 KNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQ 239
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
P CAS D ++QISG+ AV+ AL + + L+++P
Sbjct: 240 NPACASPQ--DELIQISGNFSAVMKALSSVSSCLQDSP 275
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 52/182 (28%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-----DAIARHEERVIIISSKDN 104
V+ R++ PS Q+G+V+G+ G ++KIR+E+ A +KI A A ++ +I IS +
Sbjct: 199 VVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELIQISGNFS 258
Query: 105 D--NVVSDAENALQ--------------------QIAALILKDD--------------DS 128
+S + LQ +++ ++D+ D
Sbjct: 259 AVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPTSHASSMSVQDEEPSPRRRYGSHHNADY 318
Query: 129 NSEASKVAAGHVAANT-----------IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
S + GH A RLL + G LIG G + L+N +GA+I
Sbjct: 319 RSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIK 378
Query: 178 IL 179
I+
Sbjct: 379 IV 380
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + + D + + AA RLL+ G+QA LIG G I
Sbjct: 105 LPPAMDALMRVFKXVTGITDGAAEXTQAAATPDVCAA---RLLVPGAQAINLIGKQGATI 161
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 162 KAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
>gi|147790774|emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PS++IG VIGK G ++ +REET+A I +AD++ +ERVIII S
Sbjct: 72 DTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPK 131
Query: 102 -------------KDNDNVVSDAENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
+D+ A++AL ++ I+++D + ++E + V
Sbjct: 132 EHNSNEDPEREEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV------ 185
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
T RLL+ + GCL+G G I++LR+ +GA I +L LP CA + SD +VQISG
Sbjct: 186 --TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMS--SDELVQISG 241
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 242 KPAVAKKALYEVSTLLHQNP 261
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+ +I+ P+ +IG VIGK G ++++++ET A+I + DA+A EERVI +SS
Sbjct: 341 EFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSS------F 394
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
N Q IL+ + SE S T RLL+ S+ GC++G G I ++
Sbjct: 395 EALWNPRSQTIEAILQLQNKTSEYSD-----KGGMTTRLLVPSSKVGCILGQGGHVINEM 449
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
R + A I + + P CAS + + +VQISG+ +AL EI ++LR
Sbjct: 450 RRRTQADIRVYSKEDKPKCAS--DDEELVQISGNFGVAKDALAEIASRLR 497
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 18 EPEPR-----HDVSGKRRREDGEIEGSD----PKRRAKAQDVLFRIIVPSRQIGKVIGKE 68
EP PR H + R R I G + R A +DV+FR++ ++G +IGK
Sbjct: 303 EPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKG 362
Query: 69 GHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDD 127
G ++ ++ ET A+IKI D +ER+++IS+++ + S A+ A+ + I
Sbjct: 363 GTVVRALQNETGASIKIVDT-PDLDERLVVISARETLEQTYSPAQEAVIRAHCRI----- 416
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL--- 184
+++ AA RLL+ G Q G L+G G I +R +G +I I +Q+
Sbjct: 417 -----AEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNG 471
Query: 185 -PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P+ SD VVQ+ G++P+V +AL I N++R+
Sbjct: 472 GPM------SDEVVQVIGNLPSVQDALFHITNRIRD 501
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 54/218 (24%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--------- 99
D LFR++ P+ ++ ++ + +R+ A I + + + EE V++I
Sbjct: 67 DTLFRLLCPASKVSSIL-------RHLRDIPGARIHVDEPLPSCEECVLVILAGSPSKPA 119
Query: 100 -SSKDND----------NVVSD-----------AENALQQIAALILK---DDDSNSEASK 134
++ ND NV SD A+ AL + I++ D N E K
Sbjct: 120 HTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGENQEIQK 179
Query: 135 VAAGHVAANTI-----------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
A + I RLL Q G ++G G+ +EK+R S A + I +Q
Sbjct: 180 KNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQ 239
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
P CAS D ++QISG+ AV+ AL + + L+++P
Sbjct: 240 NPACASPQ--DELIQISGNFSAVMKALSSVSSCLQDSP 275
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 52/182 (28%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-----DAIARHEERVIIISSKDN 104
V+ R++ PS Q+G+V+G+ G ++KIR+E+ A +KI A A ++ +I IS +
Sbjct: 199 VVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELIQISGNFS 258
Query: 105 D--NVVSDAENALQ--------------------QIAALILKDD--------------DS 128
+S + LQ +++ ++D+ D
Sbjct: 259 AVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPTSHASSMSVQDEEPSPRRRYGSHHNADY 318
Query: 129 NSEASKVAAGHVAANT-----------IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
S + GH A RLL + G LIG G + L+N +GA+I
Sbjct: 319 RSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIK 378
Query: 178 IL 179
I+
Sbjct: 379 IV 380
>gi|388511497|gb|AFK43810.1| unknown [Lotus japonicus]
Length = 279
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ ++ R++ P+ IG VIGK G I +IR+++ ATIK+ + ++ +I
Sbjct: 3 SAPRDEGSMREFSVRVVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIA 62
Query: 99 ISSKD--NDNVVSDAENA--LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
IS+K+ +D+ E A LQ + ++ D + + T RLL+ S+
Sbjct: 63 ISTKEFFDDSFSPTIEAAVRLQPRCSDKVERDSG-----------IVSFTTRLLVPSSRI 111
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG G I ++R + A I IL LP AS E D +VQISGD+ +ALV++
Sbjct: 112 GCLIGKGGTIITEMRRLTKANIRILPKEDLPKIAS--EDDEMVQISGDLDVAKDALVQVL 169
Query: 215 NQLREN 220
+L+ N
Sbjct: 170 TRLKAN 175
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 45/235 (19%)
Query: 26 SGKR--RREDGEIEGSDPKRR--------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
SGKR + D + E D KRR A+ V++RI+ P + IG VIGK G I I
Sbjct: 4 SGKRTGQHRDHDREDRDQKRRPAHTQETSGMAELVVYRILCPDKVIGSVIGKGGKVINSI 63
Query: 76 REETKATIKIADAIARHEERVIIISS--KDNDNVVSD--------------AENALQQ-- 117
R++T A +K+ D ++RVI++ K D ++SD A+NAL +
Sbjct: 64 RQQTNAKVKVVDPYPGADKRVILVYCYVKHRDVMLSDINADDDDDREPVCAAQNALLKVH 123
Query: 118 ---IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ AL + DD + EA+ +L+ SQA +IG SG I+KLR+ S +
Sbjct: 124 DAIVGALAVTDDSDDKEAN-------------ILVPASQAASVIGKSGSVIKKLRSVSKS 170
Query: 175 TIVILAPNQLPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
I + + + S A D VQI+GD AV AL + + + P ++ I +
Sbjct: 171 FIKVKPKDPSDVTHSCAMSFDNFVQITGDARAVKKALFAVSTIMYKCPSKENIPL 225
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-NDNV 107
++L R++ P +IG VIGK G I+ IR+E+ A + + DA EE +I +SS + D+V
Sbjct: 311 ELLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESIITVSSTEATDDV 370
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A A+ + A I +D++ +RLL+ G+ GCLIG G I
Sbjct: 371 KSAAVEAVLLLQAKI--NDETEDRMH-----------LRLLVPGNVIGCLIGKGGSIIND 417
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+RN S A I+ ++ P AS+ SD +V++ G+V + +ALV+I +LRE+
Sbjct: 418 MRNKSKA-IIHISKGTKPRKASS--SDELVEVFGEVDKLRDALVQIVLRLRED 467
>gi|224127654|ref|XP_002329331.1| predicted protein [Populus trichocarpa]
gi|222870785|gb|EEF07916.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 27/221 (12%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R VS R+ G+ S + + D ++RI+ PSR+IG VIGK G+ ++ +REET++
Sbjct: 19 RKGVSSSRK---GKWSDSHGEECSGDGDTVYRILCPSRKIGGVIGKGGNIVKALREETQS 75
Query: 82 TIKIADAIARHEERVIIISSK--------DNDNVV-------------SDAENALQQIAA 120
I +AD++ +ERVIII S D D + A++AL ++
Sbjct: 76 KITVADSVQGSDERVIIIYSSSDKPPRKMDGDEGLPAGNGQQEAFEPHCAAQDALLKVHD 135
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+++D AS + T RLL+ + GC++G G I++LR+ +GA I +L
Sbjct: 136 RIVEEDLFGGMASDDDNDNNVV-TARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVLP 194
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ LP C A ++D +VQISG AL EI L +NP
Sbjct: 195 ADHLPSC--AMDTDELVQISGKPAVAKRALYEISILLHQNP 233
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
++ +++ET A+I + DA A EER I +S+ + N Q IL+ D S+
Sbjct: 333 VKIVQQETGASIHVEDASAESEERAIRVSAFEG------LWNPRSQTIDAILQLQDKTSD 386
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
S+ G + RLL+ S+ GC++G GQ I ++R A I + N P CAS
Sbjct: 387 FSE--KGMI---ITRLLVPSSKVGCILGQGGQVINEMRRRLQADIRVYPKNDKPKCAS-- 439
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLR 218
+ + +VQISG+ +AL EI ++LR
Sbjct: 440 DDEELVQISGNYGVAKDALAEIASRLR 466
>gi|356528011|ref|XP_003532599.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 433
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK A Q+V FRII + ++G VIGK G ++ ++ E+ A I + ++ E+R++ I
Sbjct: 105 DPK--AYQQEVTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISVGPSLVECEDRLVTI 162
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEAS-KVAAGHVAANTIRLLIAGSQAGCL 157
++ +N ++ S A+ A + + K ++ E ++ + T RL++ +Q GCL
Sbjct: 163 TASENPESTYSPAQKA---VVLVFSKSVEAGVEKGLELGSKKEPYVTARLVVPSNQVGCL 219
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+G G + ++R ++GA I ++ +Q+P+C S ++D++VQISG V A+ +L
Sbjct: 220 LGKGGAIVSEMRKATGANIRVIGNDQVPMCVS--DNDQLVQISGVFSNVQAAIHNATGRL 277
Query: 218 REN 220
R++
Sbjct: 278 RDH 280
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-NDNV 107
D+L R++ P +IG VIGK G I+ IR+E+ A I + DA EE +I ++S + D+V
Sbjct: 312 DLLLRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREESIITVTSTEATDDV 371
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A A+ L+L+ +K+ G IRLL+ G+ GCLIG G +
Sbjct: 372 KSAAVEAV-----LLLQ--------AKINDGIEDRMHIRLLVPGNVIGCLIGKGGSIVND 418
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+RN S A I+ ++ P AS+ SD +V++ G+V + +ALV+I +LRE+
Sbjct: 419 MRNKSKA-IIHISKGSKPRRASS--SDELVEVFGEVDKLRDALVQIVLRLRED 468
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 22 RHDVSGKR--RREDGEIEGSDPKRRAKAQD---------VLFRIIVPSRQIGKVIGKEGH 70
RH SGKR + D + EG D KRR V++RI+ P + IG VIGK G
Sbjct: 2 RH--SGKRTSQHRDHDREGRDEKRRPAVHTQENSSNDELVVYRILCPDKVIGSVIGKNGK 59
Query: 71 RIQKIREETKATIKIADAIARHEERVIIISSKDND----------------NVVSDAENA 114
I IR++T A +K+ D ++RVI++ + V A+NA
Sbjct: 60 VINSIRQQTNAKVKVVDPYPGADKRVILVYCHVHHRDLTHRDIDVDDDDDREPVCAAQNA 119
Query: 115 LQQ-----IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
L + + AL + D + EA+ +L+ SQA +IG SG I++LR
Sbjct: 120 LLKVHDAIVEALAINSDSDDEEAN-------------ILVPASQAASVIGKSGSVIKRLR 166
Query: 170 NSSGATIVILAPNQLPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+ S ++I + + + S A D VQI+GD AV AL + + ++P +++I +
Sbjct: 167 SISKSSIKVRPKDPSEVTHSCAMSFDNFVQITGDARAVKKALFAVSAIIYKSPSKEIIPL 226
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q ++FRI+ + +IG VIGK G+ ++ ++ ET A I + ++ +ER+I +++ +N
Sbjct: 298 QQLVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISVGPTVSECDERLITVTASENPE- 356
Query: 108 VSDAENALQQIAALILKD----------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+A Q+ L+ D +S S V A RL+++ SQ GCL
Sbjct: 357 --SRYSAAQKTIVLVFSRAVESGIEKGLDPGSSRGSPVTA--------RLVVSPSQVGCL 406
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+G G I ++R ++ +I I+ +Q P C E+D VV+ISGD V +A+ + +
Sbjct: 407 LGKGGTIISEMRKATSTSIRIIVGDQRNPKCVP--ETDHVVEISGDFVNVKDAIYHVTGR 464
Query: 217 LRENPPRQVISISPA-YNYSAIRPAQPFVE 245
LR+N ++S A N S + P+V+
Sbjct: 465 LRDNLFSGMLSTPGARSNSSVLAEISPYVK 494
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 20/184 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-----------I 98
V FR++ + +IG VIGK G+ I+ ++++T A ++I DA + +RVI +
Sbjct: 36 VSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSPDRVITVIGPITQSAVV 95
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S ++ VS + AL ++ IL + +E+ VA G V+ R+L S G +I
Sbjct: 96 FSRIESAVEVSKGQEALVRVFERIL---EVAAESDSVADGVVSC---RMLAEVSSVGAVI 149
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +EK+R G I +L ++LP CA+++E +++I GDV AV LV + L+
Sbjct: 150 GKGGKVVEKIRKDCGCRIKVLV-DKLPDCAASNE--EMIEIEGDVSAVKKGLVAVSRCLQ 206
Query: 219 ENPP 222
+ P
Sbjct: 207 DCQP 210
>gi|224121400|ref|XP_002330818.1| predicted protein [Populus trichocarpa]
gi|222872620|gb|EEF09751.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR+IVP ++G +IG+ G ++K+ +ET+A I+I + +R+++IS K+
Sbjct: 10 DNVFRLIVPLSKVGSIIGRRGELVKKMCDETRARIRILEGPLGISDRIVLISGKEEPEAP 69
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
S A +A+ ++ + L + ++ S AA A +IRLL+A SQA LIG G I
Sbjct: 70 QSPAMDAVMRVFKRVSGLSPGEGDNTGSAAAAAGSAFCSIRLLVASSQAINLIGKQGSII 129
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ ++GA + ++A ++LP A++ E R+V+I G+ V AL + QLR+
Sbjct: 130 KSIQENTGAAVHVMAEDELPSYATSDE--RIVEIHGEAMKVFKALEAVIGQLRK 181
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V FR++ P+ ++G +IGK G ++ ++ E+ A+IK++D EER+I+IS+++N +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++ + ++ I+ ++ AA RLL+ G L+G G I
Sbjct: 334 RHSLAQDGVMRVHNRIV----------EIGFEPSAAVVARLLVHSPYIGRLLGKGGHLIS 383
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R ++GA+I + A +Q S H D +VQ+ G++ V +AL +I +LRE
Sbjct: 384 EMRRATGASIRVFAKDQATKYESQH--DEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 46/230 (20%)
Query: 36 IEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-A 90
+E S KR A A+ V FR++ P+ + G +IGK G I+ ++ T + I++ D I
Sbjct: 1 MEFSTSKRPATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPV 60
Query: 91 RHEERVIII----SSKDNDNVVSDAENA-------------------------------- 114
EERV++I K +++ V D+EN
Sbjct: 61 PSEERVVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMAL 120
Query: 115 LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
L+ ++ DD + + ++ G + R+++ G+Q L+ G+ I+K+R SGA
Sbjct: 121 LRVFERIVFGDDAATVDGDELDKGE-SEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGA 179
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--PP 222
+ I + +Q+P C A D V+Q++G +V AL+ + N L+E+ PP
Sbjct: 180 IVRISSTDQIPPC--AFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPP 227
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 103/181 (56%), Gaps = 18/181 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
Q V+FRI+ + ++G VIGK G+ + ++ ET ATI I +A +ER+I +++ +N ++
Sbjct: 311 QQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTASENPES 370
Query: 107 VVSDAENALQQIAALILKD------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S A+ + + + +++ D +SE S V ++RL+++ +Q GCL+G
Sbjct: 371 RYSAAQKTVVLVFSRVVESVIEKGLDPGSSEGSPV--------SVRLVVSPNQVGCLLGK 422
Query: 161 SGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++R ++ +I I+ +Q P C E+D VV+I GD V +++ I +LR+
Sbjct: 423 GGTIISEMRKATSTSIRIIGRDQGNPKCVP--ENDHVVEILGDFLNVKDSIYHITGRLRD 480
Query: 220 N 220
N
Sbjct: 481 N 481
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 23/195 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNV- 107
VLFR++ +IG +IGK G+ I+ ++++T A I+I DA +RVI I+ S +V
Sbjct: 58 VLFRLLCHDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVV 117
Query: 108 ---------VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
VS + AL ++ IL + +E+ VA G V+ RLL S G +I
Sbjct: 118 FSGIGSAIEVSKGQEALVRVFERIL---EVAAESDSVAGGLVSC---RLLAEISSVGAVI 171
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +EK+R G + +L ++LP CAS++E +++I GDV AV LV + ++L+
Sbjct: 172 GKGGKTVEKIRKDCGCKVKVLI-DKLPACASSNE--EMIEIEGDVSAVKKGLVAVSHRLQ 228
Query: 219 ENPP---RQVISISP 230
+ P +VIS P
Sbjct: 229 DCQPVDKTRVISSKP 243
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
ED + DP+ A Q+V FRI+ +IG V+GK G ++ ++ ET A I + +
Sbjct: 250 EDNRVSSLDPE--ALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVE 307
Query: 92 HEERVIIISSKDN-DNVVSDAENAL-----QQIAALILK--DDDSNSEASKVAAGHVAAN 143
E+R+I I++ +N ++ S A+ A+ + I I K D SN E+S A
Sbjct: 308 CEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTA------- 360
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+L++ +Q G L+G G + ++R ++ +I I ++P CAS + D+VVQISG++
Sbjct: 361 --QLVVPSNQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFN--DQVVQISGEL 416
Query: 204 PAVLNALVEIGNQLREN 220
P V +AL +LR++
Sbjct: 417 PNVRDALYNATRRLRDH 433
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 14/209 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI--IISSKDNDNV 107
V+FR++ + +IG IGK G I+ +++ T A I+I DA ERVI I++ + +V
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDV 79
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + AL ++ IL + S+ + V V+ RLL+ QAG +IG G + K
Sbjct: 80 SLNPQEALLKVFERILDVAAAESDGNGVGDRVVSC---RLLVNAGQAGGVIGKGGMVVAK 136
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R +G I +L ++LP C SD +++I G +V ALV + +L++ PP
Sbjct: 137 IRADTGCRIRVLN-DKLPAC--TKPSDEIIEIQGIASSVKKALVAVAGRLQDCPPLDRTK 193
Query: 228 ISPAYNYSAIRPAQPFVEPTSGQPLLQLT 256
+ RP + F TS P LT
Sbjct: 194 M------MGTRPYEAFQNETSAVPHEGLT 216
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 126/268 (47%), Gaps = 41/268 (15%)
Query: 25 VSGKR----RREDGEIEGSDPKRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
VSGKR R +G+ +G KRR QD V++RI+ P IG VIGK G I
Sbjct: 2 VSGKRPYGQRDYNGDNKGY--KRRITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVIN 59
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNV-VSDAENALQQIAA---LILK--- 124
IR+ET+A IK+ D ++RVI I KD ++V V D N Q + A +LK
Sbjct: 60 SIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHA 119
Query: 125 -DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
++ + A + ++LI SQ+ +IG +G I+KLR+ + +I I +
Sbjct: 120 AIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDA 179
Query: 184 L-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------- 229
P+ + A + D I+G+ V AL I + + + PPR+ I +
Sbjct: 180 TDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYKFPPREEIPLDTNVNEAPPNIIIP 239
Query: 230 ---PAYNYSAIRP-AQPFVEPTSGQPLL 253
P Y+ + P A P + P S P+L
Sbjct: 240 SDVPLYSAGGLYPSADPILPPRSIPPML 267
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 22/188 (11%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G I G P +++++ R++ P IG+VIGK G I+ IR+ + A +++ D +
Sbjct: 297 GGISGHPP-----SEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCD 351
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
E +I ISS ++ D++ S A + L+L++ ++ E V +RLLI
Sbjct: 352 ECIITISSFESLDDLKSMAVETV-----LLLQEKINDDEGGTV--------IMRLLIPSK 398
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
GC+IG SG I ++R S+ A I I ++L CAS+ SD +V+++G V V +ALV+
Sbjct: 399 VIGCIIGKSGSIINEIRKSTRADIRISKGDKLK-CASS--SDELVEVTGKVGCVRDALVQ 455
Query: 213 IGNQLREN 220
I +LR++
Sbjct: 456 IVLRLRDD 463
>gi|195029383|ref|XP_001987553.1| GH21981 [Drosophila grimshawi]
gi|193903553|gb|EDW02420.1| GH21981 [Drosophila grimshawi]
Length = 512
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESNDGDGPQDQKRNRRNEDMVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D ++ L+ I ++ ++ + E +RLLI
Sbjct: 60 SQGPERTIQIS--------ADIDSTLEIITEMLKYFEERDDEFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V++A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQTQVIDA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 126/268 (47%), Gaps = 41/268 (15%)
Query: 25 VSGKR----RREDGEIEGSDPKRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
VSGKR R +G+ +G KRR QD V++RI+ P IG VIGK G I
Sbjct: 2 VSGKRPYGQRDYNGDNKGY--KRRITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVIN 59
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNV-VSDAENALQQIAA---LILK--- 124
IR+ET+A IK+ D ++RVI I KD ++V V D N Q + A +LK
Sbjct: 60 SIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHA 119
Query: 125 -DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
++ + A + ++LI SQ+ +IG +G I+KLR+ + +I I +
Sbjct: 120 AIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDA 179
Query: 184 L-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------- 229
P+ + A + D I+G+ V AL I + + + PPR+ I +
Sbjct: 180 TDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYKFPPREEIPLDTNVNEAPPNIIIP 239
Query: 230 ---PAYNYSAIRP-AQPFVEPTSGQPLL 253
P Y+ + P A P + P S P+L
Sbjct: 240 SDVPLYSAGGLYPSADPILPPRSIPPML 267
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 22/188 (11%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G I G P +++++ R++ P IG+VIGK G I+ IR+ + A +++ D +
Sbjct: 297 GGISGHPP-----SEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCD 351
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
E +I ISS ++ D++ S A + L+L++ ++ E V +RLLI
Sbjct: 352 ECIITISSFESLDDLKSMAVETV-----LLLQEKINDDEGGTV--------IMRLLIPSK 398
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
GC+IG SG I ++R S+ A I I ++L CAS+ SD +V+++G V V +ALV+
Sbjct: 399 VIGCIIGKSGSIINEIRKSTRADIRISKGDKLK-CASS--SDELVEVTGKVGCVRDALVQ 455
Query: 213 IGNQLREN 220
I +LR++
Sbjct: 456 IVLRLRDD 463
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+++P+ GKVIGK G I IR+ + A I+I+D+ + +R+ +IS A
Sbjct: 557 LEMLIPANAAGKVIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQK--RTA 614
Query: 112 ENALQQI 118
EN +Q
Sbjct: 615 ENLIQAF 621
>gi|356529691|ref|XP_003533422.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 611
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
E S+ + +V+FR++ + G VIGK G ++ + +T A+I A ++ H ER+
Sbjct: 278 ESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERI 337
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN------TIRLLI 149
+ IS+ ++ ++ S A++A+ + A I++D + G + + T RLL+
Sbjct: 338 VTISAIESLESCNSPAQDAVILVFARIIED--------HIGKGFLQVSSMESPVTARLLV 389
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
A S G GQ I +LR +GA I IL +P AS + D VVQI+G+ V NA
Sbjct: 390 ATSTVNSWSGNEGQVILELREVTGADIQILHGESVPNGAS--DDDVVVQITGEYRCVQNA 447
Query: 210 LVEIGNQLREN--PPRQVISISPAYNYSAIRPAQPFVEPTSGQPL 252
L +I +++R+N P V P N+ + +P G+P
Sbjct: 448 LYKITSRIRDNLSPNEAVTEARPKSNWKVNK------DPVKGKPF 486
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 24/194 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------- 102
+ FR++ + +G +IG G + ++R ET I D+++ E+RVI++
Sbjct: 50 IAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPRKGL 109
Query: 103 ---DNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---IRLLIAGSQAG 155
D V VS A+ A+ ++ + EA K + A N+ +LL SQ G
Sbjct: 110 QLGDGGEVEVSSAQEAIVRVFERVW-----GLEAEKGVNSNRAVNSEVFSKLLAHTSQIG 164
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
++G G+NI +RNS+GA I + P P CA+ E +V I+G + AV AL+ + +
Sbjct: 165 AVVGKGGKNITAIRNSTGAKIRVCPP---PQCATKDE--ELVLITGGILAVKKALISVSH 219
Query: 216 QLRENPPRQVISIS 229
L++ PP + +S
Sbjct: 220 CLQDCPPLCKVPVS 233
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V FR++ P+ ++G +IGK G ++ ++ E+ A+IK++D EER+I+IS+++N +
Sbjct: 275 EEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 334
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++ + ++ I+ ++ AA RLL+ G L+G G I
Sbjct: 335 RHSLAQDGVMRVHNRIV----------EIGFEPSAAVVARLLVHSPYIGRLLGKGGHLIS 384
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R ++GA+I + A +Q S H D +VQ+ G++ V +AL +I +LRE
Sbjct: 385 EMRRATGASIRVFAKDQATKYESQH--DEIVQVIGNLKTVQDALFQILCRLRE 435
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 48/232 (20%)
Query: 36 IEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-A 90
+E S KR A A+ V FR++ P+ + G +IGK G I+ ++ T + I++ D I
Sbjct: 1 MEFSSSKRPATTATAAESVHFRLLCPAARTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPV 60
Query: 91 RHEERVIII----SSKDNDNVVSDAENA-------------------------------- 114
EERV++I K +D+ V D+EN
Sbjct: 61 PSEERVVLIIAPSGKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMAL 120
Query: 115 LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
L+ + ++ DD ++ + + G + + R+++ G+Q L+ G+ I+++R SGA
Sbjct: 121 LRVLERIVFGDDAASVDGDGLDKGE-SESLCRMIVRGNQVDFLMSKGGKMIQRIREDSGA 179
Query: 175 TIVILAPNQLPLCASAHESDRVVQ--ISGDVPAVLNALVEIGNQLREN--PP 222
+ I + +Q+P C A D V+Q I+G +V AL+ I N L+E+ PP
Sbjct: 180 IVRISSTDQIPPC--AFPGDVVIQMKITGKFSSVKKALLLITNCLQESGAPP 229
>gi|195401727|ref|XP_002059464.1| GJ17213 [Drosophila virilis]
gi|194142470|gb|EDW58876.1| GJ17213 [Drosophila virilis]
Length = 511
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESNDGDGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D ++ L+ I ++ ++ + E +RLLI
Sbjct: 60 SQGPERTIQIS--------TDIDSTLEIITEMLKYFEERDEEFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V++A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|195119576|ref|XP_002004307.1| GI19683 [Drosophila mojavensis]
gi|193909375|gb|EDW08242.1| GI19683 [Drosophila mojavensis]
Length = 509
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESNDGDGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D ++ L+ I ++ ++ + E +RLLI
Sbjct: 60 SQGPERTIQIS--------TDIDSTLEIITEMLKYFEERDEEYD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+ A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIEA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|224115590|ref|XP_002332094.1| predicted protein [Populus trichocarpa]
gi|222874914|gb|EEF12045.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 103/176 (58%), Gaps = 7/176 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR+IVP ++G +IG++G ++K+ +ET+A I+I + +R+++IS K+
Sbjct: 52 DNVFRLIVPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRIVLISGKEEPEAP 111
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L + D+ A+ AA A +IRLL+A SQA LIG G
Sbjct: 112 LSPAMDAVLRVFKRVSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQGS 171
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
I+ ++ ++G + ++A + +P A++ E R+V+I G+ V AL + LR+
Sbjct: 172 IIKSIQENTGVVVRVMAEDDIPTYATSDE--RIVEIHGEAMKVFKALEAVIGHLRK 225
>gi|256083129|ref|XP_002577802.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230296|emb|CCD76467.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 368
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSG 249
+ NY A R A F+ P G
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYG 177
>gi|256083127|ref|XP_002577801.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230297|emb|CCD76468.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 363
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSG 249
+ NY A R A F+ P G
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYG 177
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ V ++ IG ++G+ G RI ++R E+ A IKI+ E+R+I I+
Sbjct: 300 QVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITG 348
>gi|256083125|ref|XP_002577800.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230298|emb|CCD76469.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 371
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSG 249
+ NY A R A F+ P G
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYG 177
>gi|255583245|ref|XP_002532387.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223527911|gb|EEF29999.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 688
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 38 GSDPKRRAKA--QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
G DP + A+A +V FR++ + G +IGK+G ++ ++ ET A+I A ++ ER
Sbjct: 271 GEDPNQDAEAVRHEVSFRLLCSNGAAGSIIGKKGTIVRTLQNETGASIMFAAPMSMSGER 330
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V+ IS+ +N ++ S A+NA + A ++ D S + G A T RLL+A
Sbjct: 331 VVTISALENLESWHSPAQNAAILVFARSVEHDIEKGHPSGLIEG--ATVTARLLVASDAV 388
Query: 155 GCLI--GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
CLI G +G ++ SGA I IL Q+ CAS E D V++I+G+ V NAL
Sbjct: 389 CCLIEKGGTGNIDSEMIEVSGADIRILDGEQIMACAS--EDDVVIEITGEYKNVQNALFM 446
Query: 213 IGNQLRENPP--RQVISISPAYN 233
+ +LR P Q S++ A N
Sbjct: 447 VTGKLRGLSPDSDQETSLTRAMN 469
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 44/230 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + IG +IG+ G I +IR +T T+ + + + RVI I
Sbjct: 25 VAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQGSDHRVITIVGPASPGKRI 84
Query: 100 ------------SSKDNDNVVSDAENALQQIAALILKDD---------DSNSEASKVAAG 138
+ ++ +VS A+ A+ ++ + + D D+NS S + G
Sbjct: 85 TLNSTTCHDHNGAEEEEKELVSVAQEAVIRVCERMWEVDGQRERRGGVDNNSNNSGLGEG 144
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+ LL +Q G ++G G+N+ ++R SGA I L P P CAS + D+++Q
Sbjct: 145 YCG-----LLADTTQIGAVVGKGGKNVLRMRRESGADIRFLPP---PHCAS--KDDQLIQ 194
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ---VISISPAYNYSAIRPAQPFVE 245
I+G + AV ALV + + L + PP + + + P S + + P E
Sbjct: 195 ITGSILAVKKALVAVTDCLHDCPPYEKDPTLLMRPLERASHLASSDPHAE 244
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK E+E KR + + ++VP IG V G++G + ++R+ + A +++
Sbjct: 594 GKTFGRGAELESYSRKRSPIVVNTIIELVVPEDTIGSVYGEDGSNLARLRQISGAKVEVR 653
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQ-IAALILKD 125
+ + R+++IS D NA Q + A IL D
Sbjct: 654 EPSSGKSGRIVVISG------TPDQTNAAQSLLQAFILAD 687
>gi|256083131|ref|XP_002577803.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230295|emb|CCD76466.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 322
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 31/207 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSG 249
+ NY A R A F+ P G
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYG 177
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG++IGK G I+++R+ + A I++ D+ ARH+E +I I++ ++
Sbjct: 307 SQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATES 366
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
SD ++ + A L+L++ ++ + + V +IRLL+ GC+IG SG
Sbjct: 367 ---TSDLKSVAVE-AVLLLQEKINDEDDAPV--------SIRLLVPSKVIGCIIGRSGAI 414
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N+ A ++D +V++ G+V V +AL++I +LRE+
Sbjct: 415 INEIRKRTKADIQISRSNKPKY---ADDNDELVEVVGEVDCVRDALIQIVLRLRED 467
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 35/255 (13%)
Query: 26 SGKRRRE--DGEIEG------------SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
+GKR R+ DG+ G +D R K + + +RI+ P+ IG VIGK G
Sbjct: 4 NGKRNRQQRDGDRGGRNWDNKNQKRRVNDRDERDKGELIAYRILCPNEVIGSVIGKNGKV 63
Query: 72 IQKIREETKATIKIADAIARHEERVIII-------------SSKDNDNVVSDAENALQQI 118
I IR+E++A +K+ D + RVI I DN+ + A++AL ++
Sbjct: 64 INSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKV 123
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+ I ++ ++ K + ++L+ SQ+ LIG +G I++LR + I +
Sbjct: 124 HSAISNSIETAGDSEKKRKNK---DECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKV 180
Query: 179 LAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNY 234
+ + P + A E D V + G+ AV AL + + + P++ I + P +
Sbjct: 181 VPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETPH 239
Query: 235 SAIRPAQPFVEPTSG 249
S I P++ + P G
Sbjct: 240 SIIIPSELPIYPPGG 254
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
++VP+ +GKV+GK G + IR+ + AT++I+++ + +RV +IS + A
Sbjct: 563 LEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRA--A 620
Query: 112 ENALQQI 118
EN +Q
Sbjct: 621 ENLIQAF 627
>gi|147817258|emb|CAN62067.1| hypothetical protein VITISV_030085 [Vitis vinifera]
Length = 288
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 39/190 (20%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 96 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 154
Query: 100 SSKDNDNVVSDAE-NALQQIAAL-------ILKDDDSNSEASKVAA-------------- 137
SK + + AE N ++ A L + DDD +S A +
Sbjct: 155 KSKREASAICGAEANDGEESANLRNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 214
Query: 138 --------GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 215 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 273
Query: 190 AHESDRVVQI 199
D ++Q+
Sbjct: 274 --PGDELIQV 281
>gi|8699624|gb|AAF78762.1|AF275629_1 bancal protein [Drosophila melanogaster]
Length = 508
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|6006748|gb|AAF00596.1|AF142631_1 hnRNP K protein homolog [Drosophila melanogaster]
Length = 490
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|224135123|ref|XP_002321989.1| predicted protein [Populus trichocarpa]
gi|222868985|gb|EEF06116.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 18/186 (9%)
Query: 38 GSDPKRRA----KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+DP + +D++FRI+ P ++ +V+G+ + ++ E +K+AD ++ +
Sbjct: 336 GADPNADSAQPFYVEDLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVADPVSGSD 395
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
E++I I S++ D+ + A+ AL I I+ + A T RLL+ S
Sbjct: 396 EQIITICSEEGPDDELFPAQEALLHIQTRIV----------DLVADKDNIITTRLLVPSS 445
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ GCL G G ++ ++ + +GATI IL LP S +D +VQI G+V A +ALVE
Sbjct: 446 EIGCLEGRDG-SLSEMESLTGATIEILPKEMLPTYLSG--TDELVQIQGEVKAARDALVE 502
Query: 213 IGNQLR 218
+ ++LR
Sbjct: 503 VTSRLR 508
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +
Sbjct: 88 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI---------RLLIAGSQAGC 156
S A+ AL I IL++D S A G + RL+++ GC
Sbjct: 148 PSFSPAQEALFLIHDRILENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVVSRMHVGC 207
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 208 LLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSV--SEEIVQVIGDVNAVKNAVAIISS 265
Query: 216 QLREN 220
+LRE+
Sbjct: 266 RLRES 270
>gi|195585141|ref|XP_002082349.1| GD11524 [Drosophila simulans]
gi|194194358|gb|EDX07934.1| GD11524 [Drosophila simulans]
Length = 496
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|195336152|ref|XP_002034707.1| GM22026 [Drosophila sechellia]
gi|194126677|gb|EDW48720.1| GM22026 [Drosophila sechellia]
Length = 345
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster]
gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster]
gi|261338783|gb|ACX70073.1| RE05515p [Drosophila melanogaster]
Length = 502
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 8 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 66
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 67 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 106
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 107 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 161
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 162 AVREVITLTRDTPIKGAIHNYDPMNFDRV 190
>gi|281363839|ref|NP_001163216.1| bancal, isoform E [Drosophila melanogaster]
gi|272432584|gb|ACZ94488.1| bancal, isoform E [Drosophila melanogaster]
Length = 493
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|297806983|ref|XP_002871375.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
gi|297317212|gb|EFH47634.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
Query: 39 SDPKRRAK--AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
S P++ ++ Q V+ +I+ +IG+VIG I+ ++ ET A I + +E +
Sbjct: 262 SQPRKDSEDNKQQVVLKILCSKERIGRVIGNGRATIRDLQSETGAFITLGSNRLDCDEGL 321
Query: 97 IIISSKDNDNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
I++ ++ N A+N+ Q A L+ N+ A + +G ++ T RL++ +Q
Sbjct: 322 FTITASEDPN----AKNSPSQRALVLVFSKMYENTTAKVLDSGLTSSITARLVVRSNQIN 377
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
CL+G G ++ +GA I +L Q P C S E++++VQISG P V A+ ++ +
Sbjct: 378 CLMGEEGHIKSTIQQRTGAFITVLNVEQNPKCVS--ENNQIVQISGAFPNVKEAINQVTS 435
Query: 216 QLRENPPRQVISISPAY--NYS--AIRPAQPF---VEPTSG 249
LRE+ Q + + NY IRP F PT+G
Sbjct: 436 MLREDLINQSFQMGSHFPVNYFNPCIRPEDSFPNWFSPTTG 476
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------SSKD 103
VLFRI+ Q+G VIGK+G I++++E T + I + A RVI I +S+
Sbjct: 24 VLFRILGHVSQVGDVIGKDGRVIRQLKESTNSQIWVEKAPLDSLYRVITIIADVGSTSRV 83
Query: 104 NDNVVSDAENALQQIAALILKDDDSNS--------EASKVAAGHVAANTIRLLIAGSQAG 155
V+ + + ++ + + S + EA V G + + RLL+
Sbjct: 84 KLGVIVNNASNRKKEEVQEQEVEVSRAQGALIRVFEALNVRFGTSSTVSSRLLMEACHVV 143
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG G+ +E +R +G + I N LP CA D +V+I G+V AV LV I +
Sbjct: 144 TVIGKGGELMEMIRKETGCNVEICQYN-LPSCADP--DDVMVKIEGNVFAVKKVLVSISS 200
Query: 216 QLR 218
+L+
Sbjct: 201 RLQ 203
>gi|45552765|ref|NP_995907.1| bancal, isoform A [Drosophila melanogaster]
gi|442624312|ref|NP_001261102.1| bancal, isoform F [Drosophila melanogaster]
gi|21626883|gb|AAF57450.2| bancal, isoform A [Drosophila melanogaster]
gi|189182182|gb|ACD81867.1| LP16172p [Drosophila melanogaster]
gi|440214543|gb|AGB93634.1| bancal, isoform F [Drosophila melanogaster]
Length = 496
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|356522258|ref|XP_003529764.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 559
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E G R +DV+F+++ ++G +IGK G ++ ++ ET A+I+I +A +E
Sbjct: 179 ESAGHSSHRMFLEEDVVFKLLCHHEKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDE 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV++IS+++ S+ +++ Q A + + + +++ AA +LL+ Q
Sbjct: 239 RVVVISARE----TSEQKHSPAQEAVIRV-----HCRLTEIGFEPSAAVVAKLLVRSPQV 289
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G I ++R +GA+I I + Q+ + +++ VVQ+ G + +V +AL I
Sbjct: 290 GCLLGKGGLVISEMRRVTGASIRIFSKEQIKYIS---QNEEVVQVIGSLQSVQDALFHIT 346
Query: 215 NQLRENPPRQVISISPAYNYSA 236
+++RE + I N+SA
Sbjct: 347 SRIRET----IFPIRTPPNFSA 364
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 35/184 (19%)
Query: 42 KRR---AKAQDVLFRIIVPSRQIGKV--IGKEGHRIQKIREETKATIKIADAIARHEERV 96
KRR A D +FRI+ P+ + V IG +G A I + D ++ EERV
Sbjct: 8 KRRHAPPAAPDAVFRIVCPAAKTEDVATIGGDG-----------AKILVEDLVSA-EERV 55
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
++I ++ S A+ AL ++ + ++ NS S +L+ Q GC
Sbjct: 56 VVIVGEE-----SAAQVALVRVFERTVDEETKNSTVS-----------CKLVAPSYQVGC 99
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
++G G+ +EK+R +GA I +L +Q PL E +QI+G+ AV A++ +
Sbjct: 100 VLGRGGKIVEKIRQDTGAHIRVLPKDQPPLPPPPGE--EFIQITGNFGAVKKAVLSVSAC 157
Query: 217 LREN 220
+N
Sbjct: 158 FYDN 161
>gi|328781397|ref|XP_392536.4| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Apis
mellifera]
Length = 482
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 56 KREADAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 115
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 116 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 159
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 160 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 211
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 212 KPTTCIECIRELIATIKTSPLKGVNNPYDPHNF 244
>gi|6687391|emb|CAB64936.1| heterogeneous nuclear ribonucleoprotein (hnRNP) [Drosophila
melanogaster]
Length = 496
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|350409768|ref|XP_003488838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
impatiens]
Length = 439
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 49 KREADAGTMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 108
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 109 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 152
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 153 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 204
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 205 KPNTCIECIRELIATIKTSPLKGVNNPYDPHNF 237
>gi|194753778|ref|XP_001959187.1| GF12183 [Drosophila ananassae]
gi|190620485|gb|EDV36009.1| GF12183 [Drosophila ananassae]
Length = 511
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMIDTE-EGPQDQKRNRRTEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER I IS +D E+ L+ I ++ ++ + + +RL
Sbjct: 61 --SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRL 99
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 100 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVI 154
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P R I N+ +
Sbjct: 155 EAVREVITLTRDTPIRGAIHNYDPMNFDRV 184
>gi|340718655|ref|XP_003397779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
terrestris]
Length = 466
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 35 KREADAGTMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 94
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 95 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 138
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 139 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 190
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 191 KPNTCIECIRELIATIKTSPLKGVNNPYDPHNF 223
>gi|356516077|ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 647
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS----------- 100
+RI+ + G VIGK G I+ IR+ T A I + + + EER+I IS
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
S + ++ E L+ AA + +DD A + RL+++ GCL
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAGRDRVATRLVVSRMHVGCL 182
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NALV I ++
Sbjct: 183 LGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNALVIISSR 240
Query: 217 LRENPPR 223
LRE+ R
Sbjct: 241 LRESQHR 247
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 101/189 (53%), Gaps = 22/189 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
++++FRI+ P ++ +IG+ ++ ++ E +K+ D + +E++III+S++ D
Sbjct: 324 GEELVFRILCPVEKVDLIIGESDGIVEFLQSEVGVDVKVTDPVGGSDEQIIIITSEEGPD 383
Query: 106 NVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A+ AL +I L+L D++ T RL++ S+ CL G
Sbjct: 384 DELFPAQEALLHIQTRIVDLVLDKDNT--------------ITTRLVVPSSEIECLDGKD 429
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ ++R +GA I IL + LPLC + ++D +VQI G++ A +A+VE+ ++LR
Sbjct: 430 -VSLSEIRRLTGANIQILPRDDLPLCVA--KTDELVQIVGEIKAARDAVVEVTSRLRSYL 486
Query: 222 PRQVISISP 230
R P
Sbjct: 487 YRDFFQRDP 495
>gi|383849051|ref|XP_003700160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Megachile rotundata]
Length = 460
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 21 KREADAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 80
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 81 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 124
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 125 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 176
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++ + E+ ++ +P + + + +N+
Sbjct: 177 KPSTCIDCIRELIATIKTSPLKGMNNPYDPHNF 209
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 105/181 (58%), Gaps = 17/181 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG+VIGK G I+ +R+ + A I++ D+ A +E +III++ ++
Sbjct: 302 SRSEELIIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANFDECLIIITTTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
++ S A A+ + I +DD+ +IRLL+ GC+IG SG
Sbjct: 362 PSDLKSMAVEAVLLMQGKINDEDDTTV-------------SIRLLVPSKVIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A + I ++ P CA A+ D +V++ G V V +AL++I +LR++ R
Sbjct: 409 IINEIRKRTKADVRISKGDK-PKCADAN--DELVEVGGSVDCVRDALIQIILRLRDDVLR 465
Query: 224 Q 224
+
Sbjct: 466 E 466
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KRR D + G+D + +++RI+ P IG VIGK G I IR+ET+A +K+ D
Sbjct: 22 KRRMTDRDDRGND-------ELIVYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVD 74
Query: 88 AIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA--- 142
++RVI I K+ ++V D E A ++ + D+ + A +AA
Sbjct: 75 PFPGSKDRVITIYCYVKEKEDVEIDDEFAGKE---PLCAAQDALLKVHVAIANSIAAIGD 131
Query: 143 --------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHES 193
+ ++L+ SQ+ +IG +G I+KLR+ + A I + A + P + A E
Sbjct: 132 SEKKRKDRDECQILVPSSQSANIIGKAGATIKKLRSKTRANIKVTAKDAADPTHSCAMEF 191
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
D V I+G+ AV AL + + + + PR+ IS+ A
Sbjct: 192 DNFVVITGESEAVKRALFAVSSIMYKFGPREDISLDTA 229
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+++P+ +GKV+GK G I IR+ + A+I+I+D + +R+ +IS
Sbjct: 559 MLIPANAVGKVLGKGGANIANIRKISGASIEISDNKSARGDRIALIS 605
>gi|194881635|ref|XP_001974928.1| GG22043 [Drosophila erecta]
gi|190658115|gb|EDV55328.1| GG22043 [Drosophila erecta]
Length = 498
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D ++ ER
Sbjct: 10 EGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERT 67
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I IS +D E+ L+ I ++ ++ + + +RLLI S AGC
Sbjct: 68 IQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLIHQSLAGC 108
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG GQ I+++R+ G + + N P +DRVVQ G V++A+ E+
Sbjct: 109 VIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDAVREVITL 163
Query: 217 LRENPPRQVISISPAYNYSAI 237
R+ P + I N+ +
Sbjct: 164 TRDTPIKGAIHNYDPMNFDRV 184
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
>gi|195486812|ref|XP_002091665.1| GE12124 [Drosophila yakuba]
gi|194177766|gb|EDW91377.1| GE12124 [Drosophila yakuba]
Length = 497
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D ++ ER
Sbjct: 10 EGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERT 67
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I IS +D E+ L+ I ++ ++ + + +RLLI S AGC
Sbjct: 68 IQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLIHQSLAGC 108
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG GQ I+++R+ G + + N P +DRVVQ G V++A+ E+
Sbjct: 109 VIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDAVREVITL 163
Query: 217 LRENPPRQVISISPAYNYSAI 237
R+ P + I N+ +
Sbjct: 164 TRDTPIKGAIHNYDPMNFDRV 184
>gi|356526304|ref|XP_003531758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Glycine
max]
Length = 565
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E G R ++V+F+++ ++G +IGK G ++ ++ ET A+I+I +A +E
Sbjct: 185 ESAGHSSHRMFVEEEVVFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDE 244
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV++IS+++ S+ +++ Q A + + + +++ AA +LL+ Q
Sbjct: 245 RVVVISAQE----TSEQKHSPAQEAVIRV-----HCRLTEIGFEPSAAVVAKLLVRSPQV 295
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G I ++R ++GA+I I + Q+ + +++ VVQ+ G + +V +AL I
Sbjct: 296 GCLLGKGGLVISEMRRATGASIRIFSKEQIKYIS---QNEEVVQVIGSLQSVQDALFHIT 352
Query: 215 NQLRE 219
N++RE
Sbjct: 353 NRIRE 357
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 49/204 (24%)
Query: 42 KRR---AKAQDVLFRIIVPSRQIGKV--IGKEGHRIQKIREETKATIKIADAIARHEERV 96
KRR A D +FRI+ P+ + V IG +G A I + D + EERV
Sbjct: 8 KRRHAPPAAPDAVFRIVCPAAKTADVAAIGGDG-----------AKILVEDLVGA-EERV 55
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
++I + S A+ AL ++ + ++ NS S +L+ Q GC
Sbjct: 56 VVIVGDE-----SAAQVALIRVLERTMDEETKNSTVS-----------CKLVAPSYQVGC 99
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
++G G+ +EK+R SGA I +L +Q D +QI+G+ AV A++ +
Sbjct: 100 VLGRGGKIVEKIRQDSGAHIRVLPKDQ----PPPPPGDEFIQITGNFGAVKKAVLSVSAC 155
Query: 217 LRENPPRQVISISPAYNYSAIRPA 240
L EN NY A +P+
Sbjct: 156 LHEN------------NYGAFKPS 167
>gi|212723546|ref|NP_001131366.1| uncharacterized protein LOC100192689 [Zea mays]
gi|194691330|gb|ACF79749.1| unknown [Zea mays]
gi|413935393|gb|AFW69944.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 467
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 115/193 (59%), Gaps = 14/193 (7%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
GE E + P+ +FR++VP+ ++G +IG+ G I+++ +ET+A +++ D A H
Sbjct: 82 GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLD--APHG 139
Query: 94 E----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ R++++S+++ + +S A NA +I I + +D NS+ + +A +++RLL
Sbjct: 140 DGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPA-PEISSVRLL 198
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAV 206
+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE+ +R+V+I+G V
Sbjct: 199 VPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHETMGERIVEINGASLEV 254
Query: 207 LNALVEIGNQLRE 219
LNAL + LR+
Sbjct: 255 LNALKLVLGLLRK 267
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 17/169 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVVSD 110
FR++ P +IG VIG+ G I+ IR+E+ A I + DA EE +I IIS++ D+V S
Sbjct: 315 FRVLCPGGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTESTDDVKSA 374
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A A+ L+L+ ++SE ++ +RLL+ GCLIG G + +R
Sbjct: 375 AVEAV-----LLLQAKINDSEDDRM--------NLRLLVPNKVIGCLIGRGGSIVNDMRK 421
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ A I+I ++ P AS+ SD +V++SG+ + +ALV+I +LRE
Sbjct: 422 KTKANILISKGDK-PRRASS--SDELVEVSGEADKLRDALVQIILRLRE 467
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 31/221 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
VL+RI+ P IG VIGK G+ I IR +T A +K+ D ++RVI++
Sbjct: 41 VLYRILCPDSLIGSVIGKHGNVINAIRHQTSAKVKVVDPYPGADKRVILVYCYVKHRDLD 100
Query: 100 SSKDNDNVVSDAENALQQIAALIL--------KDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ D++ V A++AL ++ I+ DS+ ++++ A +L+
Sbjct: 101 AEGDDNEPVCAAQDALLRVHNAIVDALQTLHKNHKDSDKKSTEEA---------NILVPA 151
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNAL 210
SQA +IG SG I+ LR++S A I + + P + A D VQI+G AV AL
Sbjct: 152 SQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAMSFDNFVQITGGAEAVKKAL 211
Query: 211 VEIGNQLRENPPRQVISIS---PAYNYSAIRPAQPFVEPTS 248
+ + ++P ++ I + P S I P++ V P S
Sbjct: 212 FGVSTIIYKHPSKENIPLETSIPDPTPSIIIPSELPVYPAS 252
>gi|413935391|gb|AFW69942.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 468
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 115/193 (59%), Gaps = 14/193 (7%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
GE E + P+ +FR++VP+ ++G +IG+ G I+++ +ET+A +++ D A H
Sbjct: 82 GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLD--APHG 139
Query: 94 E----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ R++++S+++ + +S A NA +I I + +D NS+ + +A +++RLL
Sbjct: 140 DGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPA-PEISSVRLL 198
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAV 206
+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE+ +R+V+I+G V
Sbjct: 199 VPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHETMGERIVEINGASLEV 254
Query: 207 LNALVEIGNQLRE 219
LNAL + LR+
Sbjct: 255 LNALKLVLGLLRK 267
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
>gi|255561850|ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 704
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +
Sbjct: 77 YRILCHDMKAGGVIGKSGTIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 136
Query: 107 -VVSDAENALQQIAALILKDDD------SNSEASKVAAGHVAANT---IRLLIAGSQAGC 156
S A+ AL I IL+ D +N E G +N RL+++ GC
Sbjct: 137 PAFSPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVGC 196
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 197 LLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSM--SEEIVQVVGDVNAVKNAIAIISS 254
Query: 216 QLRENPPR 223
+LRE+ R
Sbjct: 255 RLRESQHR 262
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 18/173 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FR++ P+ ++ KV+G+ + ++ + +K++D ++ +E++IIISS++ D+
Sbjct: 343 DLVFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSDPVSGSDEQMIIISSEEGPDDE 402
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A+ AL I I L D N +K L+++ + GCL G G ++
Sbjct: 403 LFPAQEALLHIQTHIIDLVPDSDNIIKTK------------LIVSSGEIGCLEGRDG-SL 449
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ +GA I IL +LP C S E+D +VQI G++ A +ALVE+ ++LR
Sbjct: 450 SEMERLTGAKIQILPREKLPACVS--EADELVQIEGEIKAARDALVEVTSRLR 500
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
>gi|297740744|emb|CBI30926.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 103/177 (58%), Gaps = 17/177 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 114 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 173
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 174 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 220
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++
Sbjct: 221 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDD 274
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
F +++P+ +GKV+GK G I IR+ + A I+I+D+ + +RV +IS
Sbjct: 367 FDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 415
>gi|147818880|emb|CAN73780.1| hypothetical protein VITISV_042181 [Vitis vinifera]
Length = 637
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 103/177 (58%), Gaps = 17/177 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++
Sbjct: 409 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDD 462
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 26 SGKRRREDGEIEGSDP--KRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQKIR 76
+GKR R + +G + KRR +D +++RI+ P IG VIGK G I IR
Sbjct: 4 TGKRFRSQRDQDGDNKIQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIR 63
Query: 77 EETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALIL 123
++T+A IK+ D ++RVI I ++ + A++AL ++ A I+
Sbjct: 64 QDTRAKIKVVDPFPGAKDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIV 123
Query: 124 KDDDSNSEAS--KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
N+ AS ++L+ SQ+ +IG +G I++LR+ + A I I A
Sbjct: 124 -----NAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAK 178
Query: 182 NQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNYSAI 237
+ P + A E D V I+GD AV AL I + + PR+ I + P S I
Sbjct: 179 DSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISAIMYKFTPREEIPLDTTVPEAPPSII 238
Query: 238 RPAQPFVEPTSG 249
P+ + P G
Sbjct: 239 IPSDVPIYPAGG 250
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
F +++P+ +GKV+GK G I IR+ + A I+I+D+ + +RV +IS
Sbjct: 569 FDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 617
>gi|195430448|ref|XP_002063267.1| GK21481 [Drosophila willistoni]
gi|194159352|gb|EDW74253.1| GK21481 [Drosophila willistoni]
Length = 505
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + + + ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESSDGDAAQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D E+ L+ I ++ ++ + + +RLLI
Sbjct: 60 SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+ A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIEA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + I N+ +
Sbjct: 156 VREVITLTRDTPIKGAIHNYDPMNFDRV 183
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 23/207 (11%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR +D + S +RR+ + R+++ S+ G VIGK G I+++R + A++ I D
Sbjct: 260 KRYYQDESLHYSRKRRRSGHEGPELRLLIASKSAGAVIGKGGENIKRLRSQYCASVNIPD 319
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+ ERV+ IS N ++D ++ LI + DD S + +R+
Sbjct: 320 SST--PERVLNISCA-NVATLTDC------VSDLIPRLDDGKSGPQEAE--------VRM 362
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAG +IG +G I++LR+ +GA I + + CA ++RV+Q SGD ++
Sbjct: 363 LVHQSQAGAIIGRAGFKIKELRDITGAGIRVYSE-----CAPL-STERVIQFSGDKEKIV 416
Query: 208 NALVEIGNQLRENPPRQVISISPAYNY 234
NA+ + E P + V + A NY
Sbjct: 417 NAIRHVKEICEETPIKGVERLYDANNY 443
>gi|225443912|ref|XP_002278367.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
Length = 623
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 103/177 (58%), Gaps = 17/177 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++
Sbjct: 409 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDD 462
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 33/252 (13%)
Query: 26 SGKRRREDGEIEGSDP--KRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQKIR 76
+GKR R + +G + KRR +D +++RI+ P IG VIGK G I IR
Sbjct: 4 TGKRFRSQRDQDGDNKIQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIR 63
Query: 77 EETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALIL 123
++T+A IK+ D ++RVI I ++ + A++AL ++ A I+
Sbjct: 64 QDTRAKIKVVDPFPGAKDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIV 123
Query: 124 KDDDSNSEAS--KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
N+ AS ++L+ SQ+ +IG +G I++LR+ + A I I A
Sbjct: 124 -----NAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAK 178
Query: 182 NQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNYSAI 237
+ P + A E D V I+GD AV AL I + + PR+ I + P S I
Sbjct: 179 DSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISAIMYKFTPREEIPLDTTVPEAPPSII 238
Query: 238 RPAQPFVEPTSG 249
P+ + P G
Sbjct: 239 IPSDVPIYPAGG 250
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
F +++P+ +GKV+GK G I IR+ + A I+I+D+ + +RV +IS
Sbjct: 555 FDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 603
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 6/179 (3%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ V+FR++ + G VIGK+G ++ T A+I A + ++EER++ IS+ +
Sbjct: 269 KGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTISAFE 328
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A++A+ + I +D N A + T RLLI S L G G
Sbjct: 329 NLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAV--ESPVTARLLITTSTLHLLTGNEG 386
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
Q I +LR SGA I +L +P +A ++D VVQI+G V NAL +I + +R+NP
Sbjct: 387 QVISELRQVSGADIQLLHGEPIP---NASDNDVVVQITGGYRCVENALRKITSIIRDNP 442
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 23/235 (9%)
Query: 10 NPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEG 69
+PT S E H +R + + P + + FR++ S +G +IG G
Sbjct: 3 DPTFSAAVETTDHHHPQPPLKRNNRK----RPVFKLLPGQIAFRLVCHSSTVGGLIGSSG 58
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDN---VVSDAE----NALQQIAALI 122
+ ++R ET I DA+ ++RVI++ +D V+ D E NA + + +
Sbjct: 59 SIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVF 118
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
D E+ K G V +LL SQ G ++G G+NI +RN+SG+ I +
Sbjct: 119 --DRVWGLESEKGGNGEVYG---KLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPA- 172
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS--PAYNYS 235
P CA+ E ++ I+G+ AV AL+ + L++ PP +S++ P N S
Sbjct: 173 --PHCAAKDE--ELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTINSS 223
>gi|413935392|gb|AFW69943.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 397
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 115/193 (59%), Gaps = 14/193 (7%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
GE E + P+ +FR++VP+ ++G +IG+ G I+++ +ET+A +++ D A H
Sbjct: 82 GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLD--APHG 139
Query: 94 E----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ R++++S+++ + +S A NA +I I + +D NS+ + +A +++RLL
Sbjct: 140 DGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPAP-EISSVRLL 198
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAV 206
+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE+ +R+V+I+G V
Sbjct: 199 VPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHETMGERIVEINGASLEV 254
Query: 207 LNALVEIGNQLRE 219
LNAL + LR+
Sbjct: 255 LNALKLVLGLLRK 267
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
>gi|224118310|ref|XP_002317787.1| predicted protein [Populus trichocarpa]
gi|222858460|gb|EEE96007.1| predicted protein [Populus trichocarpa]
Length = 655
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +
Sbjct: 62 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 121
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAG-----HVAAN----TIRLLIAGSQAGC 156
S A+ AL I IL++D S G +V RL+++ GC
Sbjct: 122 PSFSPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGRGGNRVATRLVVSRMHVGC 181
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 182 LLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSM--SEEIVQVVGDVSAVKNAVAIISS 239
Query: 216 QLRENPPR 223
+LRE+ R
Sbjct: 240 RLRESQHR 247
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
+D++FRI+ P ++ +V+G+ + ++ E +K+AD ++ +E++I I S++ D+
Sbjct: 324 EDLVFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVADPVSGSDEQIITIFSEEGPDD 383
Query: 107 VVSDAENALQQIAALILK---DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG--MS 161
+ A+ AL I I+ D+D H+ T RLL+ S+ GCL G S
Sbjct: 384 ELFPAQEALLHIQTRIVDLVPDND-----------HI--TTTRLLVRSSEIGCLEGRDAS 430
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
IE+L +GATI IL +LP S D +VQI G++ A +ALVE+ ++LR
Sbjct: 431 LSEIERL---TGATIEILPKEKLPSYLSG--IDEIVQIEGEIRAARDALVEVTSRLR 482
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 21/172 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ PS +IG VIG+ G I+ IR+E+ A I + DA EE +I I+S + D+V S
Sbjct: 312 FRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESIITITSTEAIDDVKSA 371
Query: 111 AENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A A+ + A I +DD N +RLL+ GCLIG G + +
Sbjct: 372 AVEAVLLLQAKINDYEDDRMN---------------LRLLVPNKVIGCLIGRGGSIVNDM 416
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
R + A I+I ++ P AS+ SD +V++SG+ + +ALV+I +LRE+
Sbjct: 417 RKKTKANILISKGDK-PRRASS--SDELVEVSGEADKLRDALVQIILRLRED 465
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 30/249 (12%)
Query: 26 SGKRRREDGEIEGSDPKRRAK-----AQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
+GKR R+ E E + K + K AQ+ VL+RI+ P IG VIGK G+ I
Sbjct: 5 TGKRPRQHREYEREERKDQHKRPFPHAQESSNNDGLVLYRILCPDSLIGSVIGKNGNVIN 64
Query: 74 KIREETKATIKIADAIARHEERVIIISSK----------DNDNVVSDAENALQQIAALIL 123
IR++T A +K+ D ++RVI++ D++ V A++AL ++ I+
Sbjct: 65 AIRQQTSAKVKVVDPYPGADKRVILVYCYVKHRDLDAEVDDNEPVCAAQDALLRVHNAIV 124
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
N S A +L+ SQA +IG SG I+ LR++S A I + +
Sbjct: 125 DTLHRNRRDSDKKNTEEA----NILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDP 180
Query: 184 LPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNYSAIRP 239
S A D VQI+G AV AL + + ++P ++ I + P S I P
Sbjct: 181 SDATHSCAMSFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENIPLETSIPEPTPSIIIP 240
Query: 240 AQPFVEPTS 248
++ V P S
Sbjct: 241 SELPVYPAS 249
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 43/227 (18%)
Query: 36 IEGSDPKRRAKA-QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHE 93
+E S KR A A + V FR++ P+ + G +IGK G I+ ++ T + I++ D I E
Sbjct: 227 MEFSSSKRPATAAESVHFRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSE 286
Query: 94 ERVIII----SSKDNDNVVSDAEN--------------------------------ALQQ 117
ERV++I K +D+ V D+EN L+
Sbjct: 287 ERVVLIIAPSGKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRV 346
Query: 118 IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+ ++ DD ++ + + G + + R+++ G+Q L+ G+ I+++R SGA +
Sbjct: 347 LERIVFGDDAASVDGDGLDKGE-SESLCRMIVRGNQVDFLMSKGGKMIQRIREDSGAIVR 405
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--PP 222
I + +Q+P C A D V+QI+G +V AL+ I N L+E+ PP
Sbjct: 406 ISSTDQIPPC--AFPGDVVIQITGKFSSVKKALLLITNCLQESGAPP 450
>gi|30684386|ref|NP_849406.1| KH domain-containing protein [Arabidopsis thaliana]
gi|24762211|gb|AAN64172.1| putative KH domain protein [Arabidopsis thaliana]
gi|332658635|gb|AEE84035.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 532
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 213
Query: 217 LRENPPRQVI 226
+ + PR+ I
Sbjct: 214 MYKINPRENI 223
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 102/178 (57%), Gaps = 24/178 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A V ++LL++ GC+IG SG
Sbjct: 367 ES----PDDMKSMAVEAVLLLQEYINDEDAENV--------KMQLLVSSKVIGCVIGKSG 414
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I C S + D +V++SG+V +V +AL++I +LRE+
Sbjct: 415 SVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLRED 462
>gi|54290950|dbj|BAD61631.1| putative HEN4 [Oryza sativa Japonica Group]
Length = 662
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ PS ++ ++G ++ ++E+ I++ D++ +ER+III+S++ D+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL + I+ D + + T RLL+ S+ C G G ++
Sbjct: 398 LFPAQEALLHLQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 446
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++ + A + IL LP CA ESD ++QI G++ A +ALV+I +LR R++
Sbjct: 447 IQRQTSANVQILPRQALPSCAL--ESDELIQIVGEIRAARDALVQITAKLRSYFYREI 502
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
FRI+ P KV G I K+R++T A + I RVI S ++ D
Sbjct: 87 FRILCPQ---SKVYGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 107 -VVSDAENALQQIAALILK----DDDSNSEASKVA--AGHVAANTIRLLIAGSQAGCLIG 159
S A+ AL + IL+ D D + E A A T RL++ GCL+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ G+ V A+ I ++L+
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSL--SEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 32 EDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+DG+ +G R A+D V R+IVP +G ++GK G I+++R ETK I+I
Sbjct: 166 DDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRI 222
>gi|125555220|gb|EAZ00826.1| hypothetical protein OsI_22856 [Oryza sativa Indica Group]
Length = 693
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ PS ++ ++G ++ ++E+ I++ D++ +ER+III+S++ D+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL + I+ D + + T RLL+ S+ C G G ++
Sbjct: 398 LFPAQEALLHLQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 446
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++ + A + IL LP CA ESD ++QI G++ A +ALV+I +LR R++
Sbjct: 447 IQRQTSANVQILPRQALPSCAL--ESDELIQIVGEIRAARDALVQITAKLRSYFYREI 502
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
FRI+ P KV G I K+R++T A + I RVI S ++ D
Sbjct: 87 FRILCPQ---SKVYGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 107 -VVSDAENALQQIAALILK----DDDSNSEASKVA--AGHVAANTIRLLIAGSQAGCLIG 159
S A+ AL + IL+ D D + E A A T RL++ GCL+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ G+ V A+ I ++L+
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSL--SEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 32 EDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+DG+ +G R A+D V R+IVP +G ++GK G I+++R ETK I+I
Sbjct: 166 DDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRI 222
>gi|15236863|ref|NP_193572.1| KH domain-containing protein [Arabidopsis thaliana]
gi|15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-containing protein At4g18375
gi|22136632|gb|AAM91635.1| unknown protein [Arabidopsis thaliana]
gi|332658636|gb|AEE84036.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 606
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 213
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 214 MYKINPRENI---PLDSTSQDVPAASVIVPS 241
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 102/178 (57%), Gaps = 24/178 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A V ++LL++ GC+IG SG
Sbjct: 367 ES----PDDMKSMAVEAVLLLQEYINDEDAENV--------KMQLLVSSKVIGCVIGKSG 414
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I C S + D +V++SG+V +V +AL++I +LRE+
Sbjct: 415 SVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLRED 462
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 89/149 (59%), Gaps = 11/149 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +RV++
Sbjct: 70 SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVL 129
Query: 99 ISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS K+ ++ +S A +A+ ++ + L +++ ++AS +IRLL+A +QA
Sbjct: 130 ISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFC--------SIRLLVASTQAI 181
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQL 184
LIG G I+ ++ S+GA++ +L+ L
Sbjct: 182 NLIGKQGSLIKSIQESTGASVRVLSGGML 210
>gi|449456987|ref|XP_004146230.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449517605|ref|XP_004165836.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 666
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
+D++F+I+ P ++ VIG+ I+ +R + IK++D + E+++IISS + D
Sbjct: 331 GEDLVFKILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPD 390
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ + A+ AL I I+ D + + T RLL+ S GCL G G +
Sbjct: 391 DELFPAQEALLHIQTRIV---DLVPDKENIV-------TTRLLVPSSDIGCLEGRDGSLL 440
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
E ++ +GA + I+ LP+ S +D +VQI GD+ A +ALVE+ ++LR
Sbjct: 441 E-MKRLTGANVHIVPREDLPMFVSG--ADELVQIIGDIKAARDALVELTSRLR 490
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ ++ +RI+ + G VIGK G I+ IR+ T A I + + + EER+I
Sbjct: 49 SKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIE 108
Query: 99 ISSKDNDN------VVSDAENALQQIAALIL-----------------KDDDSNSEASKV 135
IS + S A+ AL I IL ++DD
Sbjct: 109 ISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGG 168
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESD 194
G RL+++ GCL+G G+ IE++R + I IL + LP C S S+
Sbjct: 169 GGGCGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISM--SE 226
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPR 223
+VQI GD AV A+ + ++LRE+ R
Sbjct: 227 EIVQIVGDTNAVKKAIAIVSSRLRESQHR 255
>gi|297742912|emb|CBI35779.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSD 110
R++ P R IG VI K G I +IR E+ A IK+ + + A ++ ++ I +K+ +
Sbjct: 45 LRLVCPIRNIGGVIRKGGVFINQIRRESGAIIKVDSTSAAEADDCLVTILAKERLHFPRG 104
Query: 111 AENA-LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + + + ++ D N + T+RLL++ +Q GC+IG GQ I+ +R
Sbjct: 105 PQTSHCIFLYRMCMRLWDWNCPSGTF--------TVRLLVSFNQIGCVIGKGGQIIQSIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ---VI 226
+ SGA I IL + LP C+ + S+ ++QIS + V L +I ++L +NP R +
Sbjct: 157 SESGAQIRILKDDHLPSCSLS--SNELIQISKEPSIVRKILYQIASRLHDNPSRSQHLFV 214
Query: 227 SISPAYNYSAIRPAQPFVEPTSGQPLL 253
+ P YS+ + + TSG P++
Sbjct: 215 YVVPI-GYSS---SGSLMGLTSGAPIM 237
>gi|226470354|emb|CAX70457.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 370
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 25/181 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +++ L+++ N+ V +RLL+ SQAGC+IG G
Sbjct: 59 DLGSIIEIFRENLEKM---------QNNRDEGV--------DLRLLVHYSQAGCVIGRGG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC S+ +DRV+Q+ GDV VLN L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIQLVGDVGKVLNCLQSIAELLEGAPP 156
Query: 223 R 223
+
Sbjct: 157 K 157
>gi|281366597|ref|NP_001163493.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|386771584|ref|NP_001246873.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
gi|134085557|gb|ABO52837.1| IP17311p [Drosophila melanogaster]
gi|272455272|gb|ACZ94764.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|383292063|gb|AFH04544.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
Length = 557
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
>gi|7486302|pir||T04533 hypothetical protein F28J12.30 - Arabidopsis thaliana
gi|2832642|emb|CAA16717.1| putative protein [Arabidopsis thaliana]
gi|7268630|emb|CAB78839.1| putative protein [Arabidopsis thaliana]
Length = 846
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 344 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 403
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 404 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 461
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 462 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 521
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 522 MYKINPRENI---PLDSTSQDVPAASVIVPS 549
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 104/188 (55%), Gaps = 30/188 (15%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 615 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 674
Query: 103 D-------NDNVVSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+ V + + ++ + A L+L++ ++ +A V ++LL++
Sbjct: 675 EILFCCLSTPFVFMQSPDDMKSMAVEAVLLLQEYINDEDAENVK--------MQLLVSSK 726
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
GC+IG SG I ++R + A I C S + D +V++SG+V +V +AL++
Sbjct: 727 VIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQ 776
Query: 213 IGNQLREN 220
I +LRE+
Sbjct: 777 IVLRLRED 784
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
+K++ ++ ++I S +IG+VIGK G I+ IR+ + + I++ D+ A H++ +I +++
Sbjct: 311 SKSEKLVIKVICSSSKIGRVIGKGGSTIKGIRQASGSHIEVNDSRANHDDDCVITVTATE 370
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL+ GC+IG SG
Sbjct: 371 SPDDLKSMAVEAV-----LLLQEKINDEDEEKVK--------MQLLVPSKVIGCIIGKSG 417
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 418 SIISEIRKRTKANIHISKGNNKPKCADPN--DELVEISGEVSDVRDALIQIVLRLRDD 473
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I
Sbjct: 43 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVTEKKDI 102
Query: 100 ----SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
S+ N ++ + A++AL ++ I+ + +E +K+ + RLL+ SQ
Sbjct: 103 IDIEHSELNYSIPLCSAQDALLKVHDAIVASLATAAENTKIDRDDI--RECRLLVPSSQC 160
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEI 213
+IG SG I+K+R+ + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 161 SNVIGKSGSIIKKIRSRTRANVKVVSKDVSDPSHTCAMDFDNIVLISGESESVKKALFAV 220
Query: 214 GNQLRENPPRQVI 226
+ + PR+ I
Sbjct: 221 SAIMYKVSPREQI 233
>gi|356509231|ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 644
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + + EER+I IS +
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGCLIGM 160
S A+ AL I IL+ D + A + RL+++ GCL+G
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEEDEEYGGRGGGRDRIATRLVVSRMHVGCLLGK 182
Query: 161 SGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ IE++R + I IL + LP C S S+ +VQ+ G+V AV NALV I ++LRE
Sbjct: 183 GGKIIEQMRMETKTQIRILPRDHNLPRCVSM--SEEIVQVVGNVNAVKNALVIISSRLRE 240
Query: 220 NPPR 223
+ R
Sbjct: 241 SQHR 244
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 101/177 (57%), Gaps = 22/177 (12%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
++++FRI+ P ++ ++IG+ ++ ++ E +K+ D + +E++III+S++ D
Sbjct: 321 GEELVFRILCPIEKVDRIIGESEGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPD 380
Query: 106 NVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A+ AL +I L+L D++ T RL++ S+ CL G
Sbjct: 381 DELFPAQEALLHVQTRIVDLVLDKDNT--------------ITTRLVVPSSEIECLDG-K 425
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ ++R +GA I IL ++LPLC + ++D +VQI G++ A +A+VE+ ++LR
Sbjct: 426 DVSLSEIRRLTGANIQILPRDELPLCVA--KTDELVQIVGEIKAARDAVVEVTSRLR 480
>gi|386771588|ref|NP_001246874.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
gi|383292064|gb|AFH04545.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
Length = 539
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
>gi|115475229|ref|NP_001061211.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|38636959|dbj|BAD03220.1| putative KH domain protein [Oryza sativa Japonica Group]
gi|113623180|dbj|BAF23125.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|215695475|dbj|BAG90642.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 15/172 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+++ R++ P+ +IG VIGK G I+ IR+E+ A I + D+ EE +I I+S +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE---AT 177
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA++A + A L+L+ SK+ + +RLL+ G GCLIG G + +
Sbjct: 178 DDAKSAAVE-AVLLLQ--------SKINDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDM 228
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
R+ + A I I + + P AS+ SD +V++ G+V + +ALV+I +LR++
Sbjct: 229 RSKTKAAIYI-SKGEKPRKASS--SDELVEVFGEVENLRDALVQIVLRLRDD 277
>gi|388500506|gb|AFK38319.1| unknown [Lotus japonicus]
Length = 437
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 104/181 (57%), Gaps = 17/181 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG+VIG+ G I+ +R+ + I++ D+ A H+E +III++ ++
Sbjct: 115 SQSEELIIRMLCPSNKIGRVIGRGGSTIKSMRQASGTRIEVDDSKANHDECLIIITTTES 174
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
++ S A A+ I I +DD+ +I+LL+ GC+IG SG
Sbjct: 175 PSDLKSMAVEAVLLIQGKISDEDDTEV-------------SIQLLVPSKVIGCIIGKSGS 221
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A I I ++ P CA + D +V++ G + V +AL++I +LR++ R
Sbjct: 222 IINEIRKRTRADIRISKGDK-PKCADVN--DELVEVGGAIDCVRDALIQIILRLRDDVLR 278
Query: 224 Q 224
+
Sbjct: 279 E 279
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I++P+ +GKV+GK G I IR+ + ATI+I+DA AR +R+ +IS + AEN
Sbjct: 372 ILIPANAVGKVLGKGGANIANIRKISGATIEISDARARG-DRIALISGTPEEKRA--AEN 428
Query: 114 ALQQI 118
+Q
Sbjct: 429 LIQAF 433
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+GKR+R DG E A R++VPSR G VIGK G I+++R E AT+ I
Sbjct: 87 TGKRQRADGYQEA------LAAGKYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTI 140
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D ++ ER++ I + + DNV+ + ++ LK DS+ E S A G + +
Sbjct: 141 PD--SQTPERIVTIVA-EIDNVIRCVNEIIPRLDEC-LKTRDSDDEGS--ARGE---SEL 191
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+ S AG +IG G I++LR + + + + ++RV+QI G
Sbjct: 192 RLLVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQ------CCPQSTERVIQIIGVPEK 245
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGQP 251
++ ++ I N L+E P + P+ Y ++ FV G P
Sbjct: 246 IIACVILIINMLKEIPIK-----GPSRPYESMFYDPNFVHEYGGFP 286
>gi|443685583|gb|ELT89137.1| hypothetical protein CAPTEDRAFT_171528 [Capitella teleta]
Length = 398
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 28 KRRREDGEIEGSDP--KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
KR E+ G P K R + +V RI++ S+ G +IGK G I+++R + AT+ +
Sbjct: 2 KRSLEEDNTIGDVPLKKTRGEGPNVELRILLQSKNAGAIIGKGGANIKRLRSDYNATVTV 61
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL----ILKDDDSNSEASKVAAGHVA 141
D+ ERV+ + + N+ + E L I +L KD + E
Sbjct: 62 PDSSG--PERVLTVGA----NLGTALEILLDVIPSLEDYKRFKDLEFECE---------- 105
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R LI SQAGC+IG G I++LR+ +GA I + + CA S+R+VQ++G
Sbjct: 106 ---MRWLIHQSQAGCVIGRGGNKIKELRDETGAQIKVYSQ-----CA-PQSSERIVQLTG 156
Query: 202 DVPAVLNALVEIGNQLRENPPR 223
V+N+L I + L+ PP+
Sbjct: 157 KPRVVVNSLATIFDLLQTAPPK 178
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+E+ A I I + + ++R+I I+ + + +A+
Sbjct: 327 QVSIPKDLAGAIIGKGGSRIRQIRQESGAGINIDEPMQGSQDRIITITGSQDQ--IQNAQ 384
Query: 113 NALQ 116
LQ
Sbjct: 385 YLLQ 388
>gi|198430105|ref|XP_002128022.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K,
like [Ciona intestinalis]
Length = 323
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%)
Query: 24 DVSGKRRREDGEIEGSD---PKRRAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
D S KR ++ E EG D P +RA+ Q + R +VP++ G +IGK G I+ +R+
Sbjct: 29 DQSFKRPYDETE-EGGDEYSPSKRARHQTHIQMRCLVPAKCAGGIIGKGGTNIKDMRDTF 87
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
KA I I D+ +R ERV+ IS+ +++ ++L+ +EA+ G
Sbjct: 88 KAQINIPDSDSR--ERVLRISA------------SIESCGEILLRTLPVINEAALNGPGR 133
Query: 140 VAAN-----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+ +I+LL+ SQAG +IG+ G I++LR +GATI + Q C ++ +D
Sbjct: 134 FGRDPKDDMSIKLLVHQSQAGGIIGVKGFKIKELREKTGATIKV----QQDCCPNS--TD 187
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVI-SISPAYNY 234
RV ++G + + +V I L PP+ I + +P + +
Sbjct: 188 RVCMVAGSAEIISSCVVLILELLETIPPKGPIQNFNPGFGF 228
>gi|427784321|gb|JAA57612.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Rhipicephalus
pulchellus]
Length = 334
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 24 DVSGKRRRE---DGEIEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
D SG +RE DG +G P +R + + V R ++ SR G +IGK G I +R
Sbjct: 5 DGSGSNKRESTDDGRADGEAPSKRPRNTGGGRAVDVRFLLQSRNAGAIIGKGGSNINSLR 64
Query: 77 EETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK-DDDSNSEASKV 135
+E KA+I + D ER++ ++V+D + + + +I K DD S A
Sbjct: 65 KEFKASISVPDCPG--PERIL--------SIVADLDTLGEILLNIIPKLDDRSMQFAQHT 114
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ + +RLL+ S AGC+IG +G I++LR S+GA I + C + E R
Sbjct: 115 GQNGGSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKVHG----SCCPGSTE--R 168
Query: 196 VVQISGDVPAVLNALVEI 213
+V+++G V++ + +I
Sbjct: 169 IVKVTGSPSVVVDCIKQI 186
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +R DGE G KR D R++V S+ G +IGK G I K+R E ATI +
Sbjct: 11 GMKRNSDGET-GPAAKRLRPMGDTELRLLVYSKVAGSIIGKGGSNISKLRTENHATILLP 69
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA---GHVAAN 143
D ER++ I + D V++ +N L + E SK+ G V +
Sbjct: 70 DCPG--PERILTIQG-NLDAVINVLQNVLPSL-----------EEVSKIRGERTGRVGDS 115
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
RLL+ SQ GC+IG G +++LR S+G I + + +C +DR+VQI G
Sbjct: 116 DARLLVHQSQIGCIIGRGGAKVKELRESTGTRITVYS-----VCC-PRSTDRIVQILGKP 169
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ +I ++E+ + I YNY
Sbjct: 170 SDCGECIKQIIALVKESQVKGPIDQYNPYNY 200
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI+KIR ++ A+I I + ER+I IS + + A+
Sbjct: 310 QVSIPKDLAGAIIGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGSSHQ--IWKAQ 367
Query: 113 NALQQ 117
LQQ
Sbjct: 368 YLLQQ 372
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
I ++DD GH T ++ I AG +IG G I K+R SGA+I I P
Sbjct: 297 IFREDDR---------GHT--ETTQVSIPKDLAGAIIGKGGARIRKIRGDSGASITIDEP 345
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R++ ISG + A + +REN
Sbjct: 346 R-------PGSTERIITISGSSHQIWKAQYLLQQSVREN 377
>gi|242024312|ref|XP_002432572.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
gi|212518032|gb|EEB19834.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
Length = 365
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 32/207 (15%)
Query: 29 RRREDGEIEGSDPKRRAKAQDV-LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
+R DG +G P++R K D R+++PS+ G +IGK GH I K+R E A++ + D
Sbjct: 2 KREIDGP-QGGGPQKRYKNSDGNEIRLLIPSKVAGSIIGKGGHNISKLRTEHNASVTVPD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
ER++ V +D + L+ ++ ++ +D IR+
Sbjct: 61 CPG--PERIL--------TVAADLDTMLRVVSEILPNLED--------------VIDIRM 96
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAGC+IG G I++LR +GA I I + N P +DR+VQI+G +
Sbjct: 97 LVHQSQAGCIIGKGGLKIKELREKTGARIKIYS-NCCP-----QSTDRIVQINGKGNLCV 150
Query: 208 NALVEIGNQLRENPPRQVISISPAYNY 234
+A+ E L+ +P + + + +N+
Sbjct: 151 DAIRECMELLKTSPIKGMNNPYDPHNF 177
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI+KIR E+ A I I + + +R+I IS N + A+
Sbjct: 294 QVTIPKDLAGAIIGKGGSRIRKIRMESGAAITIDEPLPGSNDRIITISGTPNQ--IQMAQ 351
Query: 113 NALQQ 117
LQQ
Sbjct: 352 YLLQQ 356
>gi|302143921|emb|CBI23026.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D + +
Sbjct: 6 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 65
Query: 109 ---SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
S A+ AL I IL+ D V+ HV GCL+G G+ I
Sbjct: 66 PQFSPAQEALFMIHDRILESDAGFGNGMVVSRMHV--------------GCLLGKGGKII 111
Query: 166 EKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
E++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I ++LRE+ R
Sbjct: 112 EQMRIETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNAIANISSRLRESQHR 168
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G +D ++ +D++FRI+ P ++ V+G+ I+ ++ E +K+AD +A
Sbjct: 234 ESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAG 293
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLL 148
E++I+I+S++ D+ + A+ AL I I L D N T RLL
Sbjct: 294 SNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKEN------------VITTRLL 341
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ S+ GC G ++ ++R +GA I I+ QLP S +D +++I G++ A +
Sbjct: 342 VPSSEIGCFEGRDC-SLSEMRRLTGANIQIVPREQLPAFISG--TDELLEIVGEIKAARD 398
Query: 209 ALVEIGNQLRENPPRQVI 226
ALVE+ ++LR R+
Sbjct: 399 ALVEVTSRLRSYLYREFF 416
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
+FR+++ S ++G +IG++G R++++ EETKA++++ ERV++I +K+ D +
Sbjct: 62 TVFRMLISSTKVGAIIGQKGERVRRLCEETKASVRVIGGHFAAAERVVLIFAKEQPDEPI 121
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A +AL ++ I+ DD + G +A R+LI QA LIG G I +
Sbjct: 122 PPAMDALLRVYQNIVNDD-------GLGMGSDSAVVTRILIPSEQALNLIGEQGSMINLI 174
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L N P +A + DR+V+I G V AL + LR+
Sbjct: 175 EEASQTDIRVLDCNLPP---AALDEDRIVEIWGQPTRVRKALELVARHLRK 222
>gi|413953982|gb|AFW86631.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 581
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ P+ ++ ++ ++ ++ + ++++D IA +ERV+II+S++ D+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEAVLHIQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFDGREG-SLSD 449
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LPLCA ESD ++QI G++ A NAL+++ +LR
Sbjct: 450 IQRQTSANVQILPKEDLPLCAL--ESDELIQIVGEISAARNALIQVTTKLR 498
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K G + K+R+++ A + + A RVI + ++ D
Sbjct: 91 FRILCPE---CKAYGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGH------VAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + T RL++ GCL+G
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLG 207
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ GD V A+ I ++L+
Sbjct: 208 KGGKIIEQMRMETKTHIRILPRDQHTPRCVSL--SEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 219 EN 220
E+
Sbjct: 266 ES 267
>gi|413953981|gb|AFW86630.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 667
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ P+ ++ ++ ++ ++ + ++++D IA +ERV+II+S++ D+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEAVLHIQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFDGREG-SLSD 449
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LPLCA ESD ++QI G++ A NAL+++ +LR
Sbjct: 450 IQRQTSANVQILPKEDLPLCAL--ESDELIQIVGEISAARNALIQVTTKLR 498
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K G + K+R+++ A + + A RVI + ++ D
Sbjct: 91 FRILCPE---CKAYGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGH------VAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + T RL++ GCL+G
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLG 207
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ GD V A+ I ++L+
Sbjct: 208 KGGKIIEQMRMETKTHIRILPRDQHTPRCVSL--SEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 219 EN 220
E+
Sbjct: 266 ES 267
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 17 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVT 65
Query: 110 DAENALQQIAALILKD----DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ NA+ + LI K D NS S V + T+RL++ SQ G LIG G I
Sbjct: 66 GSTNAIFKAFTLICKKFEEFQDINSGGSGVPRPPI---TLRLIVPASQCGSLIGKGGSKI 122
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 123 KEIREVTGASIQV-ASEMLP-----NSTERAVTISGTGEAITQCIYHICTVMLESPPK 174
>gi|257831439|gb|ACV71020.1| UPA21 [Capsicum annuum]
Length = 433
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D ++R++VP ++G +IG++G ++K+ E+T A I++ + + +R+++IS + D D
Sbjct: 53 DNVYRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVLEGPLGNADRIVLISGREDPDAQ 112
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
VS A +A+ ++ + + + A+ A + +LL+A SQA LIG G I++
Sbjct: 113 VSPAMDAVFRVFKRVAGLEGGDPGAAAAGF---AFCSFKLLMASSQAVHLIGRHGSTIKE 169
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ SGA++ +L+ + + A+A E R+V+I G+ VL+A + QLR+
Sbjct: 170 IQERSGASLRVLSEDDVVPYATADE--RIVEIRGEGLKVLDAFEAVVRQLRK 219
>gi|302816563|ref|XP_002989960.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
gi|300142271|gb|EFJ08973.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
Length = 393
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 29/175 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G ++++ EET++ IKI D + ER++++S+K D +
Sbjct: 48 DNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEAT 107
Query: 108 VSDAENALQQIAALILKDDDSNSEASK---VAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+S A + L ++ + + + E + + +G V + RLL+ +QAG LIG
Sbjct: 108 ISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQS---RLLVTATQAGSLIGRQ--- 161
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+LPLCA A DR+V++ G++ V A+ + + LR+
Sbjct: 162 -----------------EELPLCALA--DDRMVEVQGEILKVQKAMELVVSHLRK 197
>gi|302770987|ref|XP_002968912.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
gi|300163417|gb|EFJ30028.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
Length = 393
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 29/175 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G ++++ EET++ IKI D + ER++++S+K D +
Sbjct: 48 DNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEAT 107
Query: 108 VSDAENALQQIAALILKDDDSNSEASK---VAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+S A + L ++ + + + E + + +G V + RLL+ +QAG LIG
Sbjct: 108 ISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQS---RLLVTATQAGSLIGRQ--- 161
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+LPLCA A DR+V++ G++ V A+ + + LR+
Sbjct: 162 -----------------EELPLCALA--DDRMVEVQGEILKVQKAMELVVSHLRK 197
>gi|198458337|ref|XP_002138531.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
gi|198136305|gb|EDY69089.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
Length = 505
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D D KR + +D + RI++PS G VIGK G IQK+R + KA + + D
Sbjct: 2 KREMNDAGDGPQDQKRNRRNEDTV-RILIPSSIAGAVIGKGGQHIQKMRTQYKAAVSVDD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER I IS +D E L+ I ++ ++ + + +RL
Sbjct: 61 --SQGPERTIQIS--------ADIEATLEIITEMLKYFEERDEDFD-----------VRL 99
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 100 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQAQVI 154
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 155 EAVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|395752934|ref|XP_002830848.2| PREDICTED: poly(rC)-binding protein 3 [Pongo abelii]
Length = 432
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 26/218 (11%)
Query: 10 NPTVSVVTEP--EPRHDVSGKRRREDG--EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVI 65
P+ V EP P V G + G E+ G R A ++L+ ++G +I
Sbjct: 7 GPSAPTVLEPATSPAAPVCGGMFWKPGCMELLGCRGSRAAVGPELLW-------EVGSII 59
Query: 66 GKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
GK+G ++K+REE+ A I I++ ER++ I+ +DA + A ++
Sbjct: 60 GKKGETVKKMREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEE 111
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
D NS ++ A T+RL++ SQ G LIG G I+++R S+GA + + A + LP
Sbjct: 112 DIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP 169
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++R V ISG A++ + +I + E+PP+
Sbjct: 170 -----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 202
>gi|357463999|ref|XP_003602281.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355491329|gb|AES72532.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 646
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 12/182 (6%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+R++ + G VIGK G I+ IR+ T A I + + +A EER+I IS +D D +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 109 ---SDAENALQQIAALILKDD---DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
S A+ AL I +L++D + + G + RL+++ G L+G G
Sbjct: 125 PQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGG 184
Query: 163 QNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ IE++R + I IL + LP C S S+ +VQ++GD+ V NA + I ++LRE+
Sbjct: 185 KIIEQMRIETKTQIRILPRDSYLPRCVSM--SEEIVQVTGDIHNVKNAFLVISSRLRESQ 242
Query: 222 PR 223
R
Sbjct: 243 HR 244
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN- 106
+D++FRI+ P ++ +++G+ G ++ +++ ++I+D + +E+++II+S++ N
Sbjct: 329 EDLIFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPND 388
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A+ AL I I+ DS T RL++ S CL G + ++
Sbjct: 389 TMFPAQEALLHIQTHIVDLSDS-------------IITTRLIVPSSDIECLDGKNA-SLS 434
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++ S+GA++ IL +LP C + +D +VQI G++ A N ++++ +LR R ++
Sbjct: 435 EIERSTGASVQILPREELPPCIA--NTDELVQIVGEIEAARNVILDVTAKLRSYVYRDIL 492
Query: 227 SISPAYNYSAIRPAQPF 243
+ + P+ P
Sbjct: 493 ------QWDTVPPSAPL 503
>gi|356568533|ref|XP_003552465.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 127
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 38/42 (90%)
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS 248
+ AL EIG QLRENPPRQVISISP YNY+AIRP+QP+++PTS
Sbjct: 1 MKALEEIGCQLRENPPRQVISISPTYNYAAIRPSQPYLDPTS 42
>gi|387915508|gb|AFK11363.1| alphaCP-3 [Callorhinchus milii]
Length = 349
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 40 DPKRRAKAQDVLF--RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
DPK +V R+++ +++G +IGK+G ++K+REE+ A I I++ ER++
Sbjct: 2 DPKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIV 59
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
I+ +DA + A ++D +NS + A T+RL++ SQ G L
Sbjct: 60 TITGP------TDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPV-TLRLVVPASQCGSL 112
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I +
Sbjct: 113 IGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTERAVTISGMPDAIIQCVKQICVVM 166
Query: 218 RENPPR 223
E+PP+
Sbjct: 167 LESPPK 172
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + K E+ E G D A Q + +P+ IG +IG++G +I +IR+ + A
Sbjct: 248 RGKMELKNCNEESENWGMD----ANPQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 303
Query: 82 TIKIADAIARHEERVIIIS 100
IKIA+A ER I I+
Sbjct: 304 QIKIANATEGSTERQITIT 322
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
K R + +++ ++I+ + IG +IGKEG I++ R+E+ A I I+D ER++ ++
Sbjct: 19 KGRGHSSNLVLKMIMQGKDIGSIIGKEGSTIKQFRQESNAHINISD--GSTPERIVSVTG 76
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
D VV+ A I + + SNS+++ T+RL++ GSQ G +IG
Sbjct: 77 T-KDAVVT----AFALIGQKLEDELKSNSKSNT-----TPPVTLRLIVPGSQCGSIIGKG 126
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R SGA++V+ A LP S+R V +SG A+ + + + E P
Sbjct: 127 GAKIKEIREVSGASVVV-AGEFLP-----GSSERAVTLSGTPEALETCIDLLCGVMIEFP 180
Query: 222 PR 223
PR
Sbjct: 181 PR 182
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 103/181 (56%), Gaps = 17/181 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPN--DELVEISGEVSNVRDALIQIVLRLRDDVL 476
Query: 223 R 223
R
Sbjct: 477 R 477
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 17/217 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVISISPAYN---YSAIRPAQPFVEPTSG 249
+ + PR+ I + S I P+ + P +G
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAG 260
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + +P+ +GKV+G+ G + IR + A I+I+D+ H RV +IS
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQK- 630
Query: 108 VSDAENALQ 116
AEN Q
Sbjct: 631 -RTAENLFQ 638
>gi|148229933|ref|NP_001086212.1| MGC84166 protein [Xenopus laevis]
gi|49256273|gb|AAH74333.1| MGC84166 protein [Xenopus laevis]
Length = 225
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------TDA 67
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S
Sbjct: 68 IFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRES 126
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 157 ----QCVKQICVVMLES 169
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 AKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 103/181 (56%), Gaps = 17/181 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPN--DELVEISGEVSNVRDALIQIVLRLRDDVL 476
Query: 223 R 223
R
Sbjct: 477 R 477
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 14/191 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVI 226
+ + PR+ I
Sbjct: 224 IMYKVSPREQI 234
>gi|345320820|ref|XP_001521752.2| PREDICTED: poly(rC)-binding protein 3-like [Ornithorhynchus
anatinus]
Length = 261
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G +++ REE+ A I I+D ER++ V + + +
Sbjct: 4 KEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV--------TVTGNTSSIFKAF 53
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+ K ++ S+ ++ G A T+RL++ SQ G LIG G I+++R+ +G V
Sbjct: 54 TLICKKFEEWCSQFNEGGGGSRAPITLRLIVPASQCGSLIGKGGSKIKEIRDVTGRLYVH 113
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 114 VASEMLP-----NSTERAVTISGTCDAITQCIYHICCVMLESPPK 153
>gi|225455340|ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D + +
Sbjct: 69 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 128
Query: 109 ---SDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---------TIRLLIAGSQAGC 156
S A+ AL I IL+ D R++++ GC
Sbjct: 129 PQFSPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVGC 188
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 189 LLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNAIANISS 246
Query: 216 QLRENPPR 223
+LRE+ R
Sbjct: 247 RLRESQHR 254
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G +D ++ +D++FRI+ P ++ V+G+ I+ ++ E +K+AD +A
Sbjct: 320 ESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAG 379
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLL 148
E++I+I+S++ D+ + A+ AL I I L D N T RLL
Sbjct: 380 SNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKEN------------VITTRLL 427
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ S+ GC G ++ ++R +GA I I+ QLP S +D +++I G++ A +
Sbjct: 428 VPSSEIGCFEGRDC-SLSEMRRLTGANIQIVPREQLPAFISG--TDELLEIVGEIKAARD 484
Query: 209 ALVEIGNQLRENPPRQVI 226
ALVE+ ++LR R+
Sbjct: 485 ALVEVTSRLRSYLYREFF 502
>gi|225429818|ref|XP_002280789.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 420
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VSD 110
FR+IVP +G +IG+EG I++I E T A I + A + +++IS+K+ ++ +S
Sbjct: 29 FRLIVPGSAVGSIIGREGKIIKRISEGTGARIHVISLPAGTTDCIVLISAKEQPHLRLSP 88
Query: 111 AENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A A+ ++ + L D N SK A V +++ L+ SQA +IG G + +
Sbjct: 89 AMEAVIEVFKRVTGLYPIDGNGMCSK--ASEVKLSSVTFLVGYSQALSIIGKEGSRVRAI 146
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
SSG T+ IL +++P S E R+++I G V V+ A+ + LR
Sbjct: 147 EESSGTTVGIL--SRVPFYVSPDE--RIIKIQGQVLKVMAAMEAVLYHLR 192
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 28/182 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVT 63
Query: 110 DAENALQQIAALILKD--------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ NA+ + LI K D NS S V + T+RL++ SQ G LIG
Sbjct: 64 GSTNAIFKAFTLICKKFEEWCSQFQDINSGGSGVPRPPI---TLRLIVPASQCGSLIGKG 120
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 121 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTGEAITQCIYHICTVMLESP 174
Query: 222 PR 223
P+
Sbjct: 175 PK 176
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 TVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGK 67
T P + T P + E + G P A + +P+ IG +IG+
Sbjct: 220 TPFPPLGQTTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGR 279
Query: 68 EGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+G +I +IR+ + A IKIA+A ER I I+
Sbjct: 280 QGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 245 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 291
>gi|449493846|ref|XP_002188887.2| PREDICTED: poly(rC)-binding protein 3-like [Taeniopygia guttata]
Length = 352
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGTC--PERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDGKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G A+ A I + E+
Sbjct: 53 SEGTCPERIVTITGPTDAIFKAFSMIALKFEED 85
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER + I+
Sbjct: 271 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTIT 317
>gi|327275209|ref|XP_003222366.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 461
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL+I SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ +KV G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDTKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G A+ A I + E+
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED 85
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER-VIIISSKDNDNVVSDAE 112
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER V I S N ++
Sbjct: 287 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLI 346
Query: 113 NALQQIA 119
NA ++A
Sbjct: 347 NASLEMA 353
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 TVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGK 67
T P + T P + E + G P A + +P+ IG +IG+
Sbjct: 242 TPFPPLGQTTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGR 301
Query: 68 EGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+G +I +IR+ + A IKIA+A ER I I+
Sbjct: 302 QGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 19/184 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K + K + RI+VPS Q +IGK G I+K+R +T+ATIK+ A
Sbjct: 134 SDRKMKDKEE---CRILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCA 190
Query: 99 ISSKDNDNVVSDAENALQQIA--ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+ D DN + ++ L+ +A A++L N E +IRLL+ GC
Sbjct: 191 M---DFDNFIMSPDD-LKSMAVEAILLLQGKINDEDDDTV-------SIRLLVPCKVIGC 239
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG SG I ++R + A I I + Q P CA + SD +V++ G+V +V +ALV+I +
Sbjct: 240 IIGKSGSIINEIRRRTKADIRI-SKGQKPKCADS--SDELVEVLGEVGSVRDALVQIVLR 296
Query: 217 LREN 220
LR++
Sbjct: 297 LRDD 300
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 35/180 (19%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQD--------VLFRIIVPSRQIGKVIGKEGHRIQ 73
GKR R DG+ + KRR +D V +RI+ P IG VIGK G I
Sbjct: 5 GKRNRLQRDHHDGD--NKNQKRRVNDKDERGNNDELVAYRILCPDEVIGSVIGKNGKVIN 62
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNVVSD-----------AENALQQIAA 120
IR+ET+A +K+ D +RVI I K ++V D A++AL ++ +
Sbjct: 63 SIRQETRAKVKVVDPFPGPNDRVITIYCYVKKKEDVELDDEFHDHQPFCAAQDALLRVHS 122
Query: 121 LILKDDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
I SN+ +S + + + R+L+ SQ+ +IG +G I+KLR+ + ATI +
Sbjct: 123 AI-----SNAVSSVLDSDRKMKDKEECRILVPSSQSANIIGKAGTTIKKLRSKTRATIKV 177
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++VP+ +GKV+GK G I IR+ + A I+I+DA + +R+ IS
Sbjct: 394 LEMLVPANAVGKVLGKGGANIANIRKISGAMIEISDAKSARGDRIAHIS 442
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR+R DG E A R++VPSR G VIGK G I+++R E AT+ I D
Sbjct: 22 KRQRADGYQEA------LAAGKYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPD 75
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER++ I + + DNV+ + ++ LK DS+ E S A G + +RL
Sbjct: 76 --SQTPERIVTIVA-EIDNVIRCVNEIIPRLDEC-LKTRDSDDEGS--ARGE---SELRL 126
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ S AG +IG G I++LR + + + + ++RV+QI G ++
Sbjct: 127 LVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQ------CCPQSTERVIQIIGVPEKII 180
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGQP 251
++ I N L+E P + P+ Y ++ FV G P
Sbjct: 181 ACVILIINMLKEIPIK-----GPSRPYESMFYDPNFVHEYGGFP 219
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|326917277|ref|XP_003204927.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 448
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N + SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NPKDSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G A+ A I + E+
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED 85
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER + I+
Sbjct: 271 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTIT 317
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A + + R+I+ + +G +IGK+G I++ REE+ A I I+D ER++ I+
Sbjct: 15 APSVTLTIRLIMQGKDVGSIIGKKGDTIKRFREESGARINISDG--SSPERIVTITG--- 69
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
EN L+ + K ++ A ++ V T+RL++ SQ G LIG G
Sbjct: 70 -----STENILKAFNMIGKKFEEDMKAAHVNSSVPVPPVTLRLIVPASQCGSLIGKGGSK 124
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I+++R +GA+I + A + LP + ++R V +SG A+ + I + E+PP+
Sbjct: 125 IKEIREVTGASIQV-AGDMLP-----NSTERAVTVSGTPDAISQCVYHICCVMLESPPK 177
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 59/229 (25%)
Query: 23 HDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
++ GK+ ED ++ + V R+IVP+ Q G +IGK G +I++IRE T A+
Sbjct: 78 FNMIGKKFEED--MKAAHVNSSVPVPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGAS 135
Query: 83 IKIA-DAIARHEERVIII-----------------------------------SSKDNDN 106
I++A D + ER + + S
Sbjct: 136 IQVAGDMLPNSTERAVTVSGTPDAISQCVYHICCVMLESPPKGATIPYKPRPASGTSTSG 195
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAA--------------GHVAANTIRLLIAGS 152
V A L ++ L L+ + + + A G+ ++ T L I
Sbjct: 196 PVVFAGGQLTKLHQLALQQTPYITPGTTLPAALATQFGVQTASQPGNPSSQTHELTIPNE 255
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
GC+IG G I ++R SGATI I + +DR V I+G
Sbjct: 256 LIGCIIGKGGCKINEIRQCSGATIKIAGMQE-------GSTDRQVTITG 297
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G + + REE+ A I I+D ER++ VS
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV---------TVS 72
Query: 110 DAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ LI K ++ S+ + V IRL++ SQ G LIG SG I+++
Sbjct: 73 GTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++G +I + A LP + ++R V +SG + + +I + E+PPR
Sbjct: 133 RQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVMLESPPR 181
>gi|334187557|ref|NP_196518.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004027|gb|AED91410.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 612
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 74 KIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDDDSNSEA 132
K R T A+I + D +ER++ I++ + ++ S+++ AL L+ + N+ A
Sbjct: 328 KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRAL----VLVFSNMYENATA 383
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +G ++ T RL++ +Q CL+G G+ ++ +GA I +L Q P C S E
Sbjct: 384 KVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS--E 441
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--NYSAIRPAQPFVEPTSG 249
+++VVQISG+ P V A+ ++ + LRE+ Q Y NYS P PT+G
Sbjct: 442 NNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSE-DPFPELFSPTAG 499
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 40/199 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-----------IARHEERV-- 96
V FRI+ Q G VIGK G ++K+ + T+++I + I H V
Sbjct: 30 VTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSR 89
Query: 97 ----IIISSKDN--------DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+I+++ N + VS A+ AL ++ + D ++S S
Sbjct: 90 VKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEALNFGDCTSSTVS----------- 138
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-V 203
LL+ GS +IG +G+ ++++ +G V L + L +C + D V++I G+ +
Sbjct: 139 CNLLMEGSHVVTVIGKNGELMQRILEETGCN-VQLRSHDLSICTNP--GDVVLKIEGNRL 195
Query: 204 PAVLNALVEIGNQLRENPP 222
AV+ ALV I ++L+ PP
Sbjct: 196 SAVMKALVSISSRLQACPP 214
>gi|328702409|ref|XP_001943097.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Acyrthosiphon pisum]
gi|328702413|ref|XP_003241893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Acyrthosiphon pisum]
Length = 426
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG + + D+ R+++PS+ G +IGK G I ++R + AT+ + D
Sbjct: 2 KRFNDGHSNAPFKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDC 61
Query: 89 IARHEERVI-IISSKDND-NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IISS DN V+ + L+ + + + + G +R
Sbjct: 62 PG--PERILTIISSNDNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVR 119
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+L+ SQAGC+IG G +++LR +G+ I I + P+ +DRVVQI+G
Sbjct: 120 MLVHQSQAGCIIGKGGLKVKELREKTGSRIKIYT-SCCPM-----STDRVVQITGKPNTC 173
Query: 207 LNALVEIGNQLRENP 221
+ + E+ + L+ P
Sbjct: 174 SDCVREVLDLLKTAP 188
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+++ A I I + +ER+I I+ D+ + A+
Sbjct: 348 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTDSQ--IQMAQ 405
Query: 113 NALQQI 118
LQQ
Sbjct: 406 YLLQQC 411
>gi|301604860|ref|XP_002932078.1| PREDICTED: poly(rC)-binding protein 3-like [Xenopus (Silurana)
tropicalis]
Length = 339
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 AKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A +Q + +P+ IG +IG++G +I +IR+ + A IKIA A+ ER I I+
Sbjct: 257 ASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIASAMEGSAERQITIT 312
>gi|27503479|gb|AAH42440.1| Pcbp3 protein [Mus musculus]
Length = 249
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDA 67
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S
Sbjct: 68 IFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRES 126
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 157 ----QCVKQICVVMLES 169
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 99/173 (57%), Gaps = 17/173 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNV 107
+++ R++ P +IG+VIGK G I+ IR+ + A I++ D A +E +I +I+++ D++
Sbjct: 305 ELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPDDL 364
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A + A++L N E + + IR L+ GC+IG SG + +
Sbjct: 365 KSMA------VEAILLLQGKINDEDNDIVG-------IRFLVPSKVIGCIIGKSGAIVNE 411
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R + A + I ++L CA ++ D +V+++G+V +V +ALV+I +LR++
Sbjct: 412 IRKRTNADVCISKVDKLK-CADSN--DELVEVAGEVGSVRDALVQIVLRLRDD 461
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 115/276 (41%), Gaps = 54/276 (19%)
Query: 26 SGKRRR----EDGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
SGKR R DG+ + K D V++RI+ P IG VIGK G I IR
Sbjct: 4 SGKRSRPQRDYDGDTNNQKRHKDNKGTDNDELVVYRILCPDEVIGSVIGKSGKVINSIRN 63
Query: 78 ETKATIKIADAIARHEERVIIISSK---------DNDNVVSD----AENALQQIAALI-- 122
E++A +K+ D RVI I D+D +D A++AL ++ A I
Sbjct: 64 ESRARVKVVDPFPGAMYRVITIYCNVKEKGDADVDDDFHQADPLCPAQDALLKVHAAISN 123
Query: 123 ----LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
L D D K ++L+ SQ+ +IG +G I+KLR+ + A I I
Sbjct: 124 AVAALGDSDKRCRDKK---------ECQILVPTSQSANIIGKAGATIKKLRSKTRANIKI 174
Query: 179 LAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIG---------------NQLRENPP 222
A + P + A + D + I+G+ AV AL + + E PP
Sbjct: 175 TAKDASDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIMYKFSPKEEIPLETTVPEAPP 234
Query: 223 RQVISIS-PAYNYSAIRP-AQPFVEPTSGQPLLQLT 256
+IS P Y P A P V S P+L T
Sbjct: 235 SIIISSDVPIYQPGGFYPNADPIVSSRSVPPILGAT 270
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
++VP+ +GKVIGK G I IR+ + A I+I+DA + +R+ IS K
Sbjct: 555 LEMLVPANAVGKVIGKGGANIANIRKISGAMIEISDAKSARGDRIAYISGK 605
>gi|148223740|ref|NP_001083021.1| poly(rC)-binding protein 3 [Danio rerio]
gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Danio rerio]
Length = 350
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I +++ ER++ I+ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE--GNCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSQATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A +Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 251 GQTTPAFPGVDASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 310
Query: 94 ERVIIIS 100
+R I I+
Sbjct: 311 DRQITIT 317
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 24/197 (12%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GTSIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSN----SEASKVAAGHVAANTIRLLIAGSQ 153
VS NA+ LI K + ++A K+ + IRL++ SQ
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDAGKIGKTQIP---IRLIVPASQ 117
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 118 CGSLIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQI 171
Query: 214 GNQLRENPPRQVISISP 230
+ E+ PR ++ +P
Sbjct: 172 CLVMLESCPRSTVAKNP 188
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-D 87
++ E+ + +D + K Q + R+IVP+ Q G +IGK G +I++IR+ T +I++A +
Sbjct: 87 KKFEEWCSQFNDAGKIGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASE 145
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK------------- 134
+ ER + +S + QI ++L+ ++ A
Sbjct: 146 MLPNSTERAVTLSGS-----AEQITQCIYQICLVMLESCPRSTVAKNPLASLAALGLAGM 200
Query: 135 --VAAGHVAANTIRLLIAGSQA-----------------------GCLIGMSGQNIEKLR 169
+ G + +AGSQ GC+IG G I ++R
Sbjct: 201 NPASTGGINHTAALAALAGSQLRTANAANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIR 260
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
SGA I I + +DR + ISG+ +V AL + +R + + I
Sbjct: 261 QISGAMIRISNCEE----REGGNTDRTITISGNPDSV--ALAQYLINMRISMETAGLPI- 313
Query: 230 PAYNYSA 236
P Y+Y A
Sbjct: 314 PGYHYIA 320
>gi|66472276|ref|NP_001018567.1| poly(rC) binding protein 3 [Danio rerio]
gi|63101380|gb|AAH95089.1| Poly(rC) binding protein 3 [Danio rerio]
gi|182890686|gb|AAI65090.1| Pcbp3 protein [Danio rerio]
Length = 241
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDA 69
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S
Sbjct: 70 IFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMRES 128
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 129 TGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I N C +R+V I+G
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP-----ERIVTITGPT 67
Query: 204 PAVLNALVEIGNQLREN 220
A+ A I + E+
Sbjct: 68 DAIFKAFAMIAYKFEED 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I+++RE T A +++A D + ER + IS
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTIS 151
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 29/186 (15%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+RR V R ++ S+ G +IGK G I+++R++ KA++ + D+ + ERV+ I +
Sbjct: 70 RRRGDGPKVELRFLLASKNAGAIIGKGGSNIKRLRQDYKASVTVPDSTS--PERVLTIGA 127
Query: 102 KDNDNVVSDAENALQQIAAL----ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
N+ + E L I L K++D + E +RLL+ SQAGC+
Sbjct: 128 ----NLGTALECVLDIIPKLEDYKNYKNNDFDCE-------------MRLLVHQSQAGCI 170
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG +G I++LR +GA I + + C + E RVV I G V++ + I + L
Sbjct: 171 IGRAGFKIKELRERTGAQIKVYS----QCCPESTE--RVVAIGGKPKIVVDCIETIHDLL 224
Query: 218 RENPPR 223
+ PP+
Sbjct: 225 QTAPPK 230
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ +P G +IGK G RIQ+IR ++ A I I + + +R+I I+
Sbjct: 474 QVTIPKDLAGAIIGKGGARIQEIRRQSNAQIVIDEGLPGSNDRIITITG 522
>gi|328702411|ref|XP_003241892.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Acyrthosiphon pisum]
Length = 428
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG + + D+ R+++PS+ G +IGK G I ++R + AT+ + D
Sbjct: 4 KRFNDGHSNAPFKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDC 63
Query: 89 IARHEERVI-IISSKDND-NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IISS DN V+ + L+ + + + + G +R
Sbjct: 64 PG--PERILTIISSNDNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVR 121
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+L+ SQAGC+IG G +++LR +G+ I I +DRVVQI+G
Sbjct: 122 MLVHQSQAGCIIGKGGLKVKELREKTGSRIKIYT------SCCPMSTDRVVQITGKPNTC 175
Query: 207 LNALVEIGNQLRENP 221
+ + E+ + L+ P
Sbjct: 176 SDCVREVLDLLKTAP 190
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+++ A I I + +ER+I I+ D+ + A+
Sbjct: 350 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTDSQ--IQMAQ 407
Query: 113 NALQQI 118
LQQ
Sbjct: 408 YLLQQC 413
>gi|195377361|ref|XP_002047459.1| GJ11921 [Drosophila virilis]
gi|194154617|gb|EDW69801.1| GJ11921 [Drosophila virilis]
Length = 589
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G + + REE+ A I I+D ER++ VS
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV---------TVS 72
Query: 110 DAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ LI K ++ S+ + V IRL++ SQ G LIG SG I+++
Sbjct: 73 GTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++G +I + A LP + ++R V +SG + + +I + E+PPR
Sbjct: 133 RQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVMLESPPR 181
>gi|326490983|dbj|BAK05591.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 17/197 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
+++FRI+ P+ + ++G I ++ E +++ D IA +ER +II+S++ D+
Sbjct: 362 EIIFRILCPNDKAISLVGSRDGIIDMLQAEVGVDVRLTDLIAGSDERTLIITSREGPDHE 421
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL I I+ D + + T RLL+ S+ C G G ++
Sbjct: 422 LFPAQEALLHIQTFIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 470
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-- 225
++ + A + IL +LP C A ESD ++QI G++ A NAL+++ +LR R++
Sbjct: 471 IQRQTSANVQILPREELPSC--ALESDELIQIVGEIRAARNALMQVTTKLRSYIYREMPA 528
Query: 226 -ISISPAYNYSAIRPAQ 241
I I + +I PA+
Sbjct: 529 PIQIGGINVHGSISPAK 545
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 18/186 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDN 104
Q FRI+ P K G I ++++ A I I RVI + ++
Sbjct: 107 QTTSFRILCPE---SKAYGFPASFINNAQDDSGAIITIHPPFPGDPVRVIETADGTLREA 163
Query: 105 DN---VVSDAENALQQIAALILKD--DDSNSEASKVAAGHVAAN----TIRLLIAGSQAG 155
D + S A+ AL + IL+ DD + + G A + T RL++ G
Sbjct: 164 DGRPPMFSPAQEALLMVHRRILETQPDDGDEDGEYGPRGKDARDRGKVTTRLIVPRQHVG 223
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIG 214
CL+G G+ IE++R+ + I IL Q +P C S S++VVQ+ G+ V A+ I
Sbjct: 224 CLLGKGGKIIEQMRSETKTHIRILPREQNMPRCLSL--SEKVVQVVGEGNNVKKAVAIIS 281
Query: 215 NQLREN 220
++L+E+
Sbjct: 282 DRLKES 287
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 32 EDGEI--EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
EDGE G D + R K V R+IVP + +G ++GK G I+++R ETK I+I
Sbjct: 194 EDGEYGPRGKDARDRGK---VTTRLIVPRQHVGCLLGKGGKIIEQMRSETKTHIRI 246
>gi|294462548|gb|ADE76820.1| unknown [Picea sitchensis]
Length = 340
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 11/148 (7%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+ET A IK+ D + +ERVI++SSK+ D+ +S L+ + L K SE
Sbjct: 21 QIRQETGANIKVIDQVPDCDERVIVVSSKEFVDDRISP---TLEAVLHLQFK----TSEK 73
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
S + G T R L+ + GCL+G G I ++R + A I I++ + +P CA E
Sbjct: 74 S-IEEGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAG--E 130
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
++ +VQ+ G+V AL++I +LR N
Sbjct: 131 NEELVQVIGEVDVAREALIQIATRLRSN 158
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD------AIARHEERVIIISSKDNDN 106
R +VPS IG ++GK G I ++R+ T+A I+I +EE V +I D
Sbjct: 86 RFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAGENEELVQVIGEVDV-- 143
Query: 107 VVSDAENALQQIAAL----ILKDDDSNSEASKV 135
A AL QIA + KD D S A V
Sbjct: 144 ----AREALIQIATRLRSNVFKDQDGGSNAGSV 172
>gi|118086587|ref|XP_419049.2| PREDICTED: poly(rC)-binding protein 3 [Gallus gallus]
Length = 448
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N + SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NPKDSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G A+ A I + E+
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED 85
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER + I+
Sbjct: 271 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTIT 317
>gi|194384644|dbj|BAG59482.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A+ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIFQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|147903491|ref|NP_001091320.1| poly(rC) binding protein 1 [Xenopus laevis]
gi|124481736|gb|AAI33216.1| LOC100037147 protein [Xenopus laevis]
Length = 221
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+G+ + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGSQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 AKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
>gi|410900550|ref|XP_003963759.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 434
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTIT--------- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A A+ + A+I + ++D ++ S + T+RL+ GSQ G LIG G I++
Sbjct: 66 GATEAIFRAFAMIAQKFEEDISAAMSNSSVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R ++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 126 IRETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPK 175
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIVNSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 59 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDAI 110
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 111 FKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 169
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 170 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 214
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 54/194 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 140 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 198
Query: 109 SDAENALQQIAALILKDDDSN---------SEASKVAAGHVA------------------ 141
++QI ++L+ + + AG A
Sbjct: 199 ----QCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDVSFHF 254
Query: 142 --------------ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
A+T L I GC+IG G I ++R SGA I I
Sbjct: 255 VCLPFSSCLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN------- 307
Query: 188 ASAHESDRVVQISG 201
A+ S+R + I+G
Sbjct: 308 ATEGSSERQITITG 321
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 45 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 95
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 96 CPERIVTITGPTDAIFKAFAMIAYKFEED 124
>gi|74141926|dbj|BAE41029.1| unnamed protein product [Mus musculus]
Length = 278
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I I+
Sbjct: 270 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITIT 316
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I I+
Sbjct: 248 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITIT 294
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 292
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 278 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 324
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
>gi|449265657|gb|EMC76819.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 343
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSC--PERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ +K G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDTKATEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G A+ A I + E+
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED 85
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER + I+
Sbjct: 281 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTIT 327
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
>gi|134026176|gb|AAI35317.1| LOC733863 protein [Xenopus (Silurana) tropicalis]
Length = 475
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 95/172 (55%), Gaps = 17/172 (9%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSC--PERIVTITGP------TDA- 70
Query: 113 NALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + + LK ++D N+ + T+RL++ SQ G LIG G I+++R S
Sbjct: 71 -IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 129
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 130 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 160 ----QCVKQICVVMLES 172
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + +R+V I+G
Sbjct: 18 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGSCPERIVTITGPT 68
Query: 204 PAVLNALVEIGNQLREN 220
A+ A I + E+
Sbjct: 69 DAIFKAFSMIALKFEED 85
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ P A + + +P+ IG +IG++G +I +IR+ + A IKIA+A +
Sbjct: 275 GQTTPGFPGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANASEGNG 334
Query: 94 ER-VIIISSKDNDNVVSDAENALQQIAAL 121
ER V I S N ++ NA ++A L
Sbjct: 335 ERQVTITGSPANISLAQYLINASLEMAKL 363
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 292
>gi|7671433|emb|CAB89374.1| putative protein [Arabidopsis thaliana]
Length = 567
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 10/179 (5%)
Query: 74 KIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDDDSNSEA 132
K R T A+I + D +ER++ I++ + ++ S+++ AL L+ + N+ A
Sbjct: 332 KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRAL----VLVFSNMYENATA 387
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +G ++ T RL++ +Q CL+G G+ ++ +GA I +L Q P C S E
Sbjct: 388 KVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS--E 445
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--NYSAIRPAQPFVEPTSG 249
+++VVQISG+ P V A+ ++ + LRE+ Q Y NYS P PT+G
Sbjct: 446 NNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSE-DPFPELFSPTAG 503
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 44/203 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-----------IARHEERV-- 96
V FRI+ Q G VIGK G ++K+ + T+++I + I H V
Sbjct: 30 VTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSR 89
Query: 97 ----IIISSKDN--------DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+I+++ N + VS A+ AL ++ + D ++S S
Sbjct: 90 VKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEALNFGDCTSSTVS----------- 138
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL----CASAHESDRVVQIS 200
LL+ GS +IG +G+ ++++ +G +I A L C H + +I
Sbjct: 139 CNLLMEGSHVVTVIGKNGELMQRILEETGCNSLIKA---LLFGSSSCRIIHGTYARDKIE 195
Query: 201 GD-VPAVLNALVEIGNQLRENPP 222
G+ + AV+ ALV I ++L+ PP
Sbjct: 196 GNRLSAVMKALVSISSRLQACPP 218
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 91 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDA 142
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S
Sbjct: 143 IFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRES 201
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 202 TGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 247
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 78 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 130
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 131 --ERIVTITGPTDAIFKAFAMIAYKFEED 157
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 173 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 231
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 232 ----QCVKQICVVMLES 244
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E + G P A + +P+ IG +IG++G +I +IR+ + A IKIA+A
Sbjct: 332 EAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG 391
Query: 92 HEERVIIIS 100
ER I I+
Sbjct: 392 SSERQITIT 400
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC--PERIVTITGP------TDAI 100
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 159
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 189 ----QCVKQICVVMLES 201
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I I+
Sbjct: 248 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITIT 294
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 11/174 (6%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND--NVVSD 110
R+I+ +++G +IGK+G I+K RE++ A I I+D ER++ ++ S
Sbjct: 15 RMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDGTC--PERIVTVTGSTECILKAFSL 72
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLR 169
+++++L +S KV G T+RL++ SQ G LIG +G I ++R
Sbjct: 73 ICAKFEEMSSLSGSPTESALNGQKVLPGQTPPPVTLRLIVPASQCGSLIGKAGSKIREIR 132
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA++ + A LP + ++R V ++G AV + +I + E PP+
Sbjct: 133 EITGASVQV-ASEMLP-----NSTERTVTVAGTADAVTKCIYQICCVMLECPPK 180
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+IVP+ Q G +IGK G +I++IRE T A++++A + + ER + ++
Sbjct: 106 VTLRLIVPASQCGSLIGKAGSKIREIREITGASVQVASEMLPNSTERTVTVAG------T 159
Query: 109 SDA-ENALQQIAALILK 124
+DA + QI ++L+
Sbjct: 160 ADAVTKCIYQICCVMLE 176
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+++ G + G +IG G NI+K R SGA I I + +R+V ++G
Sbjct: 13 TVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINI---------SDGTCPERIVTVTGST 63
Query: 204 PAVLNALVEIGNQLRE 219
+L A I + E
Sbjct: 64 ECILKAFSLICAKFEE 79
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+P+ IG VIGK G +I +IR+ + ATIKI+ +ER + IS
Sbjct: 311 IPNDLIGCVIGKGGQKINEIRQLSGATIKISSTEEGSKERCVSIS 355
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 101 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 159
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 207
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 38 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 90
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 91 --ERIVTITGPTDAIFKAFAMIAYKFEED 117
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 301 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 347
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVRQICVVMLESPPK 174
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I I+
Sbjct: 248 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITIT 294
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 278 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 324
>gi|432112571|gb|ELK35287.1| Poly(rC)-binding protein 2 [Myotis davidii]
Length = 453
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +I + + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|297596401|ref|NP_001042525.2| Os01g0235800 [Oryza sativa Japonica Group]
gi|56783855|dbj|BAD81267.1| HEN4 -like [Oryza sativa Japonica Group]
gi|255673037|dbj|BAF04439.2| Os01g0235800 [Oryza sativa Japonica Group]
Length = 449
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 99/174 (56%), Gaps = 13/174 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
+ + FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + +
Sbjct: 113 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 172
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+NA+ + I+ ++ + RL+++ +Q GCL+G G I
Sbjct: 173 GISPAQNAILHVQRKIVPTSNTKEGPA----------ICRLIVSPNQVGCLLGKGGSIIA 222
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR +
Sbjct: 223 EMRKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNH 274
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 45 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 96
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 97 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 155
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 156 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 203
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 34 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 86
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 87 --ERIVTITGPTDAIFKAFAMIAYKFEED 113
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 59 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 110
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 111 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 169
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 170 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 217
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 48 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 100
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 101 --ERIVTITGPTDAIFKAFAMIAYKFEED 127
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 311 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 357
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 101 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 159
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 207
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 38 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 90
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 91 --ERIVTITGPTDAIFKAFAMIAYKFEED 117
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 300 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 346
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 343
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 264 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 323
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 324 EGSTDRQVTIT 334
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
>gi|344306639|ref|XP_003421993.1| PREDICTED: poly(rC)-binding protein 3 [Loxodonta africana]
Length = 396
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 71 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 122
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 123 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 181
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 182 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 229
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 60 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 112
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 113 --ERIVTITGPTDAIFKAFAMIAYKFEED 139
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 323 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 369
>gi|328720738|ref|XP_001949210.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 18/176 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ RI+ R++G VIGK G ++ IR+++ A + I+D ER++ I+
Sbjct: 20 NLTIRILFHGREVGNVIGKGGETVKNIRDQSGARVLISDG--STPERIVTITG------- 70
Query: 109 SDAENALQQIAALI-LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + LI LK ++ + G A T +L++ SQ G +IG G I++
Sbjct: 71 --TTNAICKATELIGLKVEEFFERQNGDWNGPKAPLTFKLIVPASQCGFIIGKGGCKIKE 128
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R SSGA I + A + LP + ++R+V I+G + + ++ N L ++PPR
Sbjct: 129 IRESSGAAIQV-ASDMLP-----NSTERLVSITGTTGTISQCVYQVCNVLLDSPPR 178
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAI 89
R++G+ G PK + F++IVP+ Q G +IGK G +I++IRE + A I++A D +
Sbjct: 92 RQNGDWNG--PK-----APLTFKLIVPASQCGFIIGKGGCKIKEIRESSGAAIQVASDML 144
Query: 90 ARHEERVIIIS 100
ER++ I+
Sbjct: 145 PNSTERLVSIT 155
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIR+L G + G +IG G+ ++ +R+ SGA ++I + +R+V I+G
Sbjct: 22 TIRILFHGREVGNVIGKGGETVKNIRDQSGARVLI---------SDGSTPERIVTITGTT 72
Query: 204 PAVLNALVEIGNQLRENPPRQ 224
A+ A IG ++ E RQ
Sbjct: 73 NAICKATELIGLKVEEFFERQ 93
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|116007842|ref|NP_001036619.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
gi|113194920|gb|ABI31266.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
Length = 539
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 46/272 (16%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--------VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
SGKR R + +G ++ D +++RI+ P IG VIGK G I IR
Sbjct: 4 SGKRSRPQRDYDGDTNNQKRHKDDKGTNNDGLIVYRILCPDGVIGSVIGKSGKVINSIRH 63
Query: 78 ETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALILK 124
E++A +K+ D ++R+I I ++ N + A++AL ++ A I
Sbjct: 64 ESRARVKVVDPFPGAKDRIITIYCHIKEKEDVDVDDDFNHTNPLCAAQDALLKVHAAI-- 121
Query: 125 DDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
SN+ AS + + ++L+ SQ+ +IG +G I++LR+ + +I I+A +
Sbjct: 122 ---SNAVASLGDSDKRLRDKEECQILVPASQSANIIGKAGATIKRLRSKTRTSIKIIAKD 178
Query: 183 QL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------ 229
P + A + D + I+G+ AV AL + + + P++ I +
Sbjct: 179 STDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIMYKFNPKEEIPLEATVPEPPPSIII 238
Query: 230 ----PAYNYSAIRP-AQPFVEPTSGQPLLQLT 256
P Y P A+P V S P+L T
Sbjct: 239 PSDVPIYQPGGFYPNAEPIVSSRSVPPILGAT 270
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
++ ++++ R++ P +IG+VIGK G I+ IR+ + A I++ D A +E +I +++ +
Sbjct: 302 SRYEELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADRDECIITVTATE 360
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 186
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 77
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 78 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 108
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 276 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 335
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 336 EGSTDRQVTIT 346
>gi|380792087|gb|AFE67919.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 193
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 21/177 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN------- 66
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 67 --AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 124 RESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+RE++ A I I++ ER++ I+ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I L E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGAPEAIIQCVKQICVVLLESPPK 174
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 250 GQTTPAFPGLDASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 309
Query: 94 ERVIIIS 100
ER I I+
Sbjct: 310 ERQITIT 316
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 262 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 321
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 322 EGSTDRQVTIT 332
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|222618061|gb|EEE54193.1| hypothetical protein OsJ_01028 [Oryza sativa Japonica Group]
Length = 748
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 108/201 (53%), Gaps = 17/201 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
+ FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + + +
Sbjct: 414 LTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGI 473
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NA+ + I+ ++ + RL+++ +Q GCL+G G I ++
Sbjct: 474 SPAQNAILHVQRKIVPTSNTKEGPA----------ICRLIVSPNQVGCLLGKGGSIIAEM 523
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR + R +
Sbjct: 524 RKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRM-- 579
Query: 229 SPAYNYSAIRPAQPFVEPTSG 249
A ++P V+P G
Sbjct: 580 --ASTVPNVQPPFGLVDPQFG 598
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+FRI+ P+ + G VIGK G I KIR+ET I++ + + +ERVI+I++ D D VS
Sbjct: 89 IFRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITAIDKDREVS 147
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A+G ++RLL+ SQ G L+G +G I+++ S I + + ++LPLCA D
Sbjct: 268 ASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDSCCEIRV-SKDKLPLCALPR--DE 324
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA--QPFVEPTSGQPLL 253
+ QI+G++ +V L + L +PP++ + A+N + R QP V P QP L
Sbjct: 325 LCQITGELDSVRKGLNTVAQLLFTHPPKESDVLG-AHNSGSSRSFFNQPDVLPPGMQPNL 383
Query: 254 QLTM 257
L
Sbjct: 384 HLPF 387
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 344
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 268 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 327
Query: 95 RVIIIS 100
R + I+
Sbjct: 328 RQVTIT 333
>gi|354490195|ref|XP_003507245.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cricetulus
griseus]
Length = 349
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTIT 322
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 32 EDGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
ED GS K +D + R+I+ +++G +IGK+G + + REE+ A I I+D
Sbjct: 2 EDNNTSGSASGAPIKLEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD 61
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIR 146
ER++ VS +A+ LI K ++ S+ + V IR
Sbjct: 62 --GSCPERIV---------TVSGTTSAIFAAFTLITKKFEEWCSQFNDVGKVGKTQIPIR 110
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L++ SQ G LIG SG I+++R ++G +I + A LP + ++R V +SG +
Sbjct: 111 LIVPASQCGSLIGKSGSKIKEIRQNTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQI 164
Query: 207 LNALVEIGNQLRENPPR 223
+ +I + E+PPR
Sbjct: 165 TQCIYQICLVMLESPPR 181
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A + R+I+ +++G +IGK G I+K RE++ A I I+D+ ER++ ++
Sbjct: 16 AVTLTIRLIMQGKEVGSIIGKGGETIKKFREQSGARINISDSSC--AERIVTVTGS---- 69
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
NA + I +D +N S V T+RL++ SQ G LIG G I+
Sbjct: 70 -TEAINNAFEMITKKFEEDVSNNMANSSTPKPPV---TLRLVVPASQCGSLIGKGGSKIK 125
Query: 167 KLRNSSGATIVILAPNQLPLCASAHES-DRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R ++GA++ + A + L H+S +R V ISG A+ + +I + E+PP+
Sbjct: 126 EIRENTGASVQV-AGDML------HQSTERAVTISGTPEAITKCVYQICCVMLESPPK 176
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ I++P+ IG VIG+ G +I +IR+ + ATIKIA++ +R + IS
Sbjct: 258 YEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGSNDRSVTIS 306
>gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding protein, splicevariant E [Mus musculus]
Length = 349
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|218187831|gb|EEC70258.1| hypothetical protein OsI_01061 [Oryza sativa Indica Group]
Length = 722
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 107/201 (53%), Gaps = 17/201 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
+ FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + + +
Sbjct: 388 LTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGI 447
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NA+ + I+ ++ RL+++ +Q GCL+G G I ++
Sbjct: 448 SPAQNAILHVQRKIVPTSNTKE----------GPAICRLIVSPNQVGCLLGKGGSIIAEM 497
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR + R +
Sbjct: 498 RKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRM-- 553
Query: 229 SPAYNYSAIRPAQPFVEPTSG 249
A ++P V+P G
Sbjct: 554 --ASTVPNVQPPFGLVDPQFG 572
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+FRI+ P+ + G VIGK G I KIR+ET I++ + + +ERVI+I++ D D VS
Sbjct: 89 IFRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITAIDKDREVS 147
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A+G ++RLL+ SQ G L+G +G I+++ S I + + ++LPLCA D
Sbjct: 268 ASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDSCCEIRV-SKDKLPLCALPR--DE 324
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+ QI+G++ +V L + L +PP++
Sbjct: 325 LCQITGELDSVRKGLNTVAQLLFTHPPKE 353
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 22/175 (12%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 18 RLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVTGPT 66
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ + +LI K + E + G + T+RL++ SQ G LIG G I+++
Sbjct: 67 NAIFKAFSLICKKFEEFQEL-QSGGGSMGIPKPPITLRLIVPASQCGSLIGKGGSKIKEI 125
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 126 REVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 174
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS
Sbjct: 100 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTIS 151
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + A + K ++D S S A T+RL++ SQ G LIG G I+++
Sbjct: 66 DA--IFKAFAMIAYKFEEDIISSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 124 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 292
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 103/181 (56%), Gaps = 17/181 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICASSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKV--------KMQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I ++R + A I I N P SA +D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTP--KSADPNDELVEISGEVSNVRDALIQIVLRLRDDVL 476
Query: 223 R 223
R
Sbjct: 477 R 477
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 17/217 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDASDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVISISPAYN---YSAIRPAQPFVEPTSG 249
+ + PR+ I + S I P+ + P +G
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAG 260
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + +P+ +GKV+G+ G + IR + A I+I+D+ H RV +IS
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQK- 630
Query: 108 VSDAENALQ 116
AEN Q
Sbjct: 631 -RTAENLFQ 638
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|297804330|ref|XP_002870049.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297315885|gb|EFH46308.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 605
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 101/178 (56%), Gaps = 24/178 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++ +++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 306 SRSKELVLKVLCPLSNITRVIGKGGSTIKRIRETSGSCIEVNDSRTKCGDDECVIIVTAT 365
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A KV ++L ++ GC+IG SG
Sbjct: 366 ES----PDDMKSMAVEAVLLLQEYINDEDAEKV--------KMQLFVSSKDIGCVIGKSG 413
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I C S + D +V+++G++ +V NA+++I +LRE+
Sbjct: 414 SVINEIRKRTNANI----------CISKGKKDDLVEVAGEISSVRNAIIQIVLRLRED 461
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-------- 101
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 38 VIYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKKEE 97
Query: 102 -----KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
K + A++AL ++ I+ D+ N + LL+ SQ+
Sbjct: 98 EIDFMKSETEPLCCAQDALLKVYDAIVASDEEN-----IKIDRDDKKECLLLVPSSQSFS 152
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG +G+NI+++R+++ A++ +++ + P A + D +V ISG+ +V AL +
Sbjct: 153 LIGKAGENIKRIRSTTRASVKVVSKDVSDPSHVCAMDYDNIVVISGEPESVKKALFAVSA 212
Query: 216 QLRENPPRQVI 226
L + PR+ I
Sbjct: 213 ILYKINPREHI 223
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|495128|emb|CAA53546.1| mCBP [Mus musculus]
Length = 331
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +I ++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIRRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|291409711|ref|XP_002721142.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
Length = 362
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPLV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKHICVVMLESPPKGV 174
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 56/206 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISS------- 101
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 102 -----------------------KDNDNVVSDAENALQQIAALILKD------------- 125
K + + V A L ++ L ++
Sbjct: 158 CVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFS 217
Query: 126 --DDSNSEASKVAAGHVAA---NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ S+ E AG A+ + L I GC+IG G I ++R SGA I I
Sbjct: 218 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 277
Query: 181 PNQLPLCASAHESDRVVQISGDVPAV 206
P + +DR V I+G ++
Sbjct: 278 PVE-------GSTDRQVTITGSAASI 296
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 225 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 284
Query: 95 RVIIIS 100
R + I+
Sbjct: 285 RQVTIT 290
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 55/205 (26%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISS------- 101
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 102 -----------------------KDNDNVVSDAENALQQIAALILKD------------- 125
K + + V A L ++ L ++
Sbjct: 158 CVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFS 217
Query: 126 --DDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ S+ E +A T L I GC+IG G I ++R SGA I I P
Sbjct: 218 GIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 277
Query: 182 NQLPLCASAHESDRVVQISGDVPAV 206
+ +DR V I+G ++
Sbjct: 278 VE-------GSTDRQVTITGSAASI 295
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 219 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 278
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 279 EGSTDRQVTIT 289
>gi|47209955|emb|CAF90944.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++KIREE+ A I I++ ER++ I+ A A+ +
Sbjct: 6 QEVGSIIGKKGETVKKIREESGARINISEG--SSPERIVTITG---------ATEAIFRT 54
Query: 119 AALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
A+I + ++D N+ S T+RL+ GSQ G LIG G I+++R ++GA +
Sbjct: 55 FAMIAQKFEEDINAAMSNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQV 114
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 115 QV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPK 155
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++ P Q G +IGK G +I++IRE T A +++A D + ER + IS
Sbjct: 81 VTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQVQVAGDMLPDSTERAVTIS 132
>gi|392884376|gb|AFM91020.1| poly(rC) binding protein 3, isoform CRAb [Callorhinchus milii]
Length = 349
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 40 DPKRRAKAQDVLF--RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
DPK +V R+++ +++G +IGK+G ++K+R E+ A I I++ ER++
Sbjct: 2 DPKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRVESGARINISEG--NCPERIV 59
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
I+ +DA + A ++D +NS + A T+RL++ SQ G L
Sbjct: 60 TITGP------TDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPV-TLRLVVPASQCGSL 112
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I +
Sbjct: 113 IGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTERAVTISGMPDAIIQCVKQICVVM 166
Query: 218 RENPPR 223
E+PP+
Sbjct: 167 LESPPK 172
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + K E+ E G D A Q + +P+ IG +IG++G +I +IR+ + A
Sbjct: 248 RGKMELKNCNEESENWGMD----ANPQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 303
Query: 82 TIKIADAIARHEERVIIIS 100
IKIA+A ER I I+
Sbjct: 304 QIKIANATEGSTERQITIT 322
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+R+E+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R+ SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|297821485|ref|XP_002878625.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297324464|gb|EFH54884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 633
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N +V
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNKSVLL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGDFSGGEHEDWVTCDVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R SSGA I +L P P+C + +D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRSSGAMIRVLPP---PICGT--NTDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLRENPP 222
V ALV + +++NPP
Sbjct: 198 VKKALVMVSTCIQDNPP 214
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 14/192 (7%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG+ +R+ V+F+II S G +IGK+G I+ ++ ET A+I I + ERV
Sbjct: 269 EGNGTERK-----VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISIGAPLKVSGERV 323
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+ IS+++N ++ S A+NAL + A ++ D + G V +LL+ A
Sbjct: 324 VTISARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAVVKT--KLLVPSQFAN 381
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G N E + ++GA + I NQ+ S E++ V++I G+ V AL + +
Sbjct: 382 SLVGNG--NREAII-ATGADVHIPVDNQILEWIS--ENEVVIEIKGEYGHVQKALTHVSS 436
Query: 216 QLREN-PPRQVI 226
+LREN P++V+
Sbjct: 437 KLRENLLPKKVL 448
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIISS
Sbjct: 29 ETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIISS 85
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 86 NE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGEG 134
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 135 GKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 189
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G G D A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 269 EKGYWAGLD----ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 324
Query: 92 HEERVIIIS 100
+R + I+
Sbjct: 325 STDRQVTIT 333
>gi|291409713|ref|XP_002721143.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
Length = 340
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPLV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKHICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G + + REE+ A I I+D ER++ VS
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV---------TVS 72
Query: 110 DAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+A+ LI K ++ S+ + V IRL++ SQ G LIG SG I+++
Sbjct: 73 GTTSAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++G +I + A LP + ++R V +SG + + +I + E+PPR
Sbjct: 133 RQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVMLESPPR 181
>gi|224097168|ref|XP_002310861.1| predicted protein [Populus trichocarpa]
gi|222853764|gb|EEE91311.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 10/180 (5%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKDNDNVV 108
V FR++ + +IG +IG G I +IR ET + +A+ E R I+++ S + +
Sbjct: 26 VAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRAIVVAGSASPERKI 85
Query: 109 SDAENALQQIAA---LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ E+ +++A +++ + E V G LL SQ G ++G G+NI
Sbjct: 86 AVGEDETVEVSAAQEAVVRVLERMWEVDAVKDGGDCEGYCGLLANTSQIGAVVGREGRNI 145
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLRENPPRQ 224
++++ +SGA I IL PLCA + D+++QI+G AV A++ I + L++ PP +
Sbjct: 146 KRMKRASGAHIWILPA---PLCAL--KEDQLIQITGSSTVAVKKAVIAITSCLQDCPPYE 200
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K+ + V FR+I P G +IGK G ++ ++ +T A+I +A I + R++ +
Sbjct: 246 DHKKPNEQLQVQFRMICPHGAAGSIIGKGGSVVRALQNQTGASIILAPPITNSDGRLVTV 305
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+ +N ++ S A+NAL + A ++ D A + T LL+ ++ CLI
Sbjct: 306 SALENLESSHSPAQNALLLVFARSIEHDIER--ARSLGLIEEITVTATLLLPSNRVSCLI 363
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
G+ ++ ++GA I IL +Q CAS +D V+Q+
Sbjct: 364 ERGGRIDSEMIETTGADIQILQGDQFFYCAS--NNDVVLQV 402
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 265 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 320
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G G D A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 240 EKGYWAGLD----ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 92 HEERVIIIS 100
+R + I+
Sbjct: 296 STDRQVTIT 304
>gi|297792661|ref|XP_002864215.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
gi|297310050|gb|EFH40474.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 71 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDVERIIEISDNRRRDPDGRM 130
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 131 PSFSPAQEALFNVHDRILESEPQFGYGGAQPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 190
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL+ + +
Sbjct: 191 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELSAVKNALLIVSS 248
Query: 216 QLRENPPR-----QVISISPAYNYSA 236
+LRE+ R Q S SP ++A
Sbjct: 249 RLRESQHRDRSNFQGRSHSPERQFAA 274
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 30/198 (15%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
++++F+I+ P+ +I +V+G+ + ++ E ++++D + +E++I ISS++ D
Sbjct: 322 TEELVFQILCPADKIVRVVGESQGILDLLQNEIGVDVRVSDPVTGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL I I L D D+ T RLL++ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLLPDKDN-------------LITTRLLVSSRDSVCLEGKAG 428
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR---- 218
++ ++ +G ++ ILA ++P CAS + D V+QI+GD+ A +ALVE+ LR
Sbjct: 429 -SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGDIRAARDALVELTLLLRSHMF 485
Query: 219 ------ENPPRQVISISP 230
E PP + P
Sbjct: 486 KELSQKETPPASTSTTGP 503
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
SK +A T R+L ++AG +IG SG I+ +R +GA I + HE
Sbjct: 59 SKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWI------------NVHE 106
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
VP + ++EI + R +P ++ S SPA
Sbjct: 107 L---------VPGDVERIIEISDNRRRDPDGRMPSFSPA 136
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|348503027|ref|XP_003439068.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 446
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D+V
Sbjct: 18 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISE--GSCPERIITITG-STDSVF--- 71
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
A I + +D + VA G +++ T+RL+I SQ G LIG G I+++
Sbjct: 72 -RAFTMITYKLEED-----LTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEI 125
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA I + A + LP + ++R V ISG+ +V+ + I + E+PP+
Sbjct: 126 RESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPK 174
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A I++A D + ER + IS + D+V+
Sbjct: 100 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLLPNSTERGVTISG-NQDSVI 158
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ I +IL+ + + AA LLIAG+Q
Sbjct: 159 ----QCVKLICTVILESPPKGATIPYRPSPSPAA----LLIAGNQ 195
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A + I + +R++ I+G
Sbjct: 17 TLRLLMHGKEVGSIIGKKGETVKRIREESSARVNI---------SEGSCPERIITITGST 67
Query: 204 PAVLNALVEIGNQLREN 220
+V A I +L E+
Sbjct: 68 DSVFRAFTMITYKLEED 84
>gi|348507477|ref|XP_003441282.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 434
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSSPERIVTITGPTEGIF-- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A IA +D + S V + T+RL+ GSQ G LIG G I+++R
Sbjct: 73 ---RAFSMIAQKFEEDITAAMTNSNVTSK--PPVTLRLVFPGSQCGSLIGKGGSKIKEIR 127
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI--- 226
++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 128 ETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPKGATIPY 181
Query: 227 --SISPAYNYSAIRP---AQPFVEP 246
+ PA ++ + P AQ F P
Sbjct: 182 RPKVIPAGTHAVLAPQHSAQAFAIP 206
>gi|432865686|ref|XP_004070563.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 467
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D+V
Sbjct: 29 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISE--GSCPERIITITG-STDSVF--- 82
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
A I + +D + VA G +++ T+RL+I SQ G LIG G I+++
Sbjct: 83 -RAFTMITYKLEED-----LTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEI 136
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA I + A + LP + ++R V ISG+ +V+ + I + E+PP+
Sbjct: 137 RESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPK 185
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A I++A D + ER + IS + D+V+
Sbjct: 111 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLLPNSTERGVTISG-NQDSVI 169
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ I +IL+ + AA LLIAG+Q
Sbjct: 170 ----QCVKLICTVILESPPKGATIPYRPTPSPAA----LLIAGNQ 206
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A + I + +R++ I+G
Sbjct: 28 TLRLLMHGKEVGSIIGKKGETVKRIREESSARVNI---------SEGSCPERIITITGST 78
Query: 204 PAVLNALVEIGNQLREN 220
+V A I +L E+
Sbjct: 79 DSVFRAFTMITYKLEED 95
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 45 AKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
AK++D + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ I
Sbjct: 3 AKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD--GSCPERIVTI 60
Query: 100 SSKDNDNVVSDAENALQQIAALILKD-----DDSNSEASKVAAGHVAANTIRLLIAGSQA 154
S + A+ + +LI + N + A G T+RL++ SQ
Sbjct: 61 SG---------STEAIYKAFSLICTKVEEFIEMQNGKTGATAIGKCGM-TLRLIVPASQC 110
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G I+++R ++GA I + A + LP ++R V ++G ++ + I
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQV-ASDVLP-----QSTERAVTLTGTRDSITQCIFHIC 164
Query: 215 NQLRENPPRQV 225
+ E+PP+ V
Sbjct: 165 AVMVESPPKGV 175
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G++I++IRE T A I++A D + + ER + ++ D++
Sbjct: 99 MTLRLIVPASQCGSLIGKGGNKIKEIREATGAQIQVASDVLPQSTERAVTLTGT-RDSIT 157
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-------RLLIAGSQAGC----- 156
+ I A++++ A + A I L AGS AGC
Sbjct: 158 ----QCIFHICAVMVESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTM 213
Query: 157 LIGMSGQNIEKL----RNSSGATIVILAPNQLPLCASAHESDRVVQISGDV--------- 203
++G N L + A++ ++ P PL +A ++ +++G+
Sbjct: 214 MVGGGPYNAPMLMVPPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGL 273
Query: 204 -----------PAVLNALVEIGNQLREN 220
PA L AL G+QLR N
Sbjct: 274 GSLGGPANSFNPAALAALA--GSQLRSN 299
>gi|326935820|ref|XP_003213964.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Meleagris
gallopavo]
Length = 232
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 19/185 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 8 SGPREPQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSC--PERITT 65
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I+ +DA + A L++D + AAG T+RL+I SQ G LI
Sbjct: 66 ITGS------TDAVFRAVSMIAFKLEEDLGDG----TAAGRTPV-TLRLVIPASQCGSLI 114
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G +G I ++R SSGA + + A + LP + ++R V +SG ++ + +I +
Sbjct: 115 GKAGTKIREIRESSGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIQCVRQICAVIL 168
Query: 219 ENPPR 223
E+PP+
Sbjct: 169 ESPPK 173
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIAR 91
DG G P V R+++P+ Q G +IGK G +I++IRE + A +++A D +
Sbjct: 90 DGTAAGRTP--------VTLRLVIPASQCGSLIGKAGTKIREIRESSGAQVQVAGDLLPN 141
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ER + +S D ++ ++QI A+IL+
Sbjct: 142 STERAVTVSGVP-DTII----QCVRQICAVILES 170
>gi|410899813|ref|XP_003963391.1| PREDICTED: poly(rC)-binding protein 4-like [Takifugu rubripes]
Length = 447
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D V
Sbjct: 18 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISE--GSCPERIITITG-STDCVF--- 71
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
A I + +D A+ VA G ++ T+RL+I SQ G LIG G I+++
Sbjct: 72 -RAFTMITHKLEED-----LAALVANGTISTKPPVTLRLVIPASQCGSLIGKGGAKIKEI 125
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA I + A + LP + ++R V ISG+ +V+ + I + E+PP+
Sbjct: 126 RESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPK 174
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A I++A D + ER + IS + D+V+
Sbjct: 100 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLLPNSTERGVTISG-NQDSVI 158
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A + I + +R++ I+G
Sbjct: 17 TLRLLMHGKEVGSIIGKKGETVKRIREESSARVNI---------SEGSCPERIITITGST 67
Query: 204 PAVLNALVEIGNQLREN 220
V A I ++L E+
Sbjct: 68 DCVFRAFTMITHKLEED 84
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQ----DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
G +R D EI S +R K V RI++ S+ G +IGK G+ I ++R + AT
Sbjct: 21 GNKRPADEEIGNSQSSKRTKGGGDGPKVDLRILLQSKNAGAIIGKGGNNIHRLRTQYNAT 80
Query: 83 IKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--------LKDDDSNSEASK 134
+ + D ER++ V ++ E AL + +I KD D + E
Sbjct: 81 VTVPDCSG--PERIL--------TVTTNQETALSCLLDVIPVLEEYQQYKDLDFDCE--- 127
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+R+L+ SQAG +IG +G I++LR +GA I + + +C ++ E
Sbjct: 128 ----------MRMLVHQSQAGAIIGRAGFKIKELREQTGANIKVYS----EVCPNSTE-- 171
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
RVVQ++G V+N + I + L + P + + + Y
Sbjct: 172 RVVQMNGSPEVVINCMRMILDVLNQTPIKGPVQLYDPY 209
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
+Q ++ +P G +IGK G RI +IRE++ A IKI + + +R+I I
Sbjct: 352 SQFTTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITI 404
>gi|363746094|ref|XP_003643523.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Gallus gallus]
Length = 239
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 8 SGPREPQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--SCPERITT 65
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I+ +DA + A L++D + AAG T+RL+I SQ G LI
Sbjct: 66 ITGS------TDAVFRAVSMIAFKLEEDLGDG----TAAGRTPV-TLRLVIPASQCGSLI 114
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G +G I ++R SSGA + + A + LP + ++R V +SG ++ + +I +
Sbjct: 115 GKAGTKIREIRESSGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIQCVRQICAVIL 168
Query: 219 ENPPR-QVISISPAYNYSAI 237
E+PP+ I P + I
Sbjct: 169 ESPPKGATIPYHPGLSLGTI 188
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIAR 91
DG G P V R+++P+ Q G +IGK G +I++IRE + A +++A D +
Sbjct: 90 DGTAAGRTP--------VTLRLVIPASQCGSLIGKAGTKIREIRESSGAQVQVAGDLLPN 141
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ER + +S D ++ ++QI A+IL+
Sbjct: 142 STERAVTVSGVP-DTII----QCVRQICAVILES 170
>gi|8809595|dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 189
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL + +
Sbjct: 190 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELNAVKNALAIVSS 247
Query: 216 QLRENPPR-----QVISISPAYNYSA 236
+LRE+ R Q S SP +++A
Sbjct: 248 RLRESQHRDRSNFQGRSHSPERSFAA 273
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 98/178 (55%), Gaps = 20/178 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
+++++F+I+ P+ +I +V+G+ I ++ E ++++D +A +E++I ISS++ D
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALILK---DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL I I+ D D+ T RLL+ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDKDN-------------LITTRLLVPSRDSICLEGKAG 428
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++ ++ +G ++ ILA ++P CAS + D V+QI+G++ A ALVE+ LR +
Sbjct: 429 -SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGEIRAAREALVELTLLLRSH 483
>gi|30696273|ref|NP_200118.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|30725478|gb|AAP37761.1| At5g53060 [Arabidopsis thaliana]
gi|332008915|gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 652
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 189
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL + +
Sbjct: 190 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELNAVKNALAIVSS 247
Query: 216 QLRENPPR-----QVISISPAYNYSA 236
+LRE+ R Q S SP +++A
Sbjct: 248 RLRESQHRDRSNFQGRSHSPERSFAA 273
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 98/178 (55%), Gaps = 20/178 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
+++++F+I+ P+ +I +V+G+ I ++ E ++++D +A +E++I ISS++ D
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALILK---DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL I I+ D D+ T RLL+ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDKDN-------------LITTRLLVPSRDSICLEGKAG 428
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++ ++ +G ++ ILA ++P CAS + D V+QI+G++ A ALVE+ LR +
Sbjct: 429 -SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGEIRAAREALVELTLLLRSH 483
>gi|55742577|ref|NP_998282.1| poly(rC)-binding protein 4 [Danio rerio]
gi|33604078|gb|AAH56323.1| Zgc:65870 [Danio rerio]
gi|41946775|gb|AAH65955.1| Zgc:65870 [Danio rerio]
Length = 442
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A I I++ ER+I I+
Sbjct: 7 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISE--GSCPERIITITGA--------T 56
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
E + + +K ++ A+ VA G V + T+RL+I SQ G LIG G I+++
Sbjct: 57 ECVFRAFTMITIKLEE--DLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 114
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R +GA + + A + LP + ++R V ISG A++ + I + E+PP+
Sbjct: 115 REKTGAQVQV-AGDLLP-----NSTERGVTISGSQDAIIQCVKLICTVILESPPK 163
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDN 104
V R+++P+ Q G +IGK G +I++IRE+T A +++A D + ER + IS +
Sbjct: 89 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQD 144
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A I I + +R++ I+G
Sbjct: 6 TLRLLMHGKEVGSIIGKKGETVKRIREESSARINI---------SEGSCPERIITITGAT 56
Query: 204 PAVLNALVEIGNQLREN 220
V A I +L E+
Sbjct: 57 ECVFRAFTMITIKLEED 73
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 45 AKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
AK++D + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ I
Sbjct: 3 AKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTI 60
Query: 100 SSKDNDNVVSDAENALQQIAALILKD-----DDSNSEASKVAAGHVAANTIRLLIAGSQA 154
S + A+ + +LI + N + A G T+RL++ SQ
Sbjct: 61 SG---------STEAIYKAFSLICTKVEEFIEMQNGKTGATAIGKCGM-TLRLIVPASQC 110
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G I+++R ++GA I + A + LP ++R V ++G ++ + I
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQV-ASDVLP-----QSTERAVTLTGTRDSITQCIFHIC 164
Query: 215 NQLRENPPRQV 225
+ E+PP+ V
Sbjct: 165 AVMVESPPKGV 175
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G++I++IRE T A I++A D + + ER + ++ D++
Sbjct: 99 MTLRLIVPASQCGSLIGKGGNKIKEIREATGAQIQVASDVLPQSTERAVTLTGT-RDSIT 157
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-------RLLIAGSQAGC----- 156
+ I A++++ A + A I L AGS AGC
Sbjct: 158 ----QCIFHICAVMVESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTM 213
Query: 157 LIGMSGQNIEKL----RNSSGATIVILAPNQLPLCASAHESDRVVQISGDV--------- 203
++G N L + A++ ++ P PL +A ++ +++G+
Sbjct: 214 MVGGGPYNAPMLMVPPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGL 273
Query: 204 -----------PAVLNALVEIGNQLREN 220
PA L AL G+QLR N
Sbjct: 274 GSLGGPANSFNPAALAALA--GSQLRSN 299
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 43/230 (18%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A + + R+++ +++G +IGK+G +++ REE+ A I I+D ER++ I+ +
Sbjct: 13 APSVTLTIRLLMAGKEVGSIIGKKGEIVKRFREESGARINISDG--SCPERIVTITGTTD 70
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMS 161
A+ + LI K + E AG T+RL++ SQ G LIG
Sbjct: 71 ---------AIFKAFNLICKKLEE--EVGGPLAGTAIPRPPITLRLIMPASQCGSLIGKG 119
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA++V+ A LP + ++R V +SG A+ + I + E+P
Sbjct: 120 GSKIKEIREITGASVVV-ASEMLP-----NSTERAVTVSGTSDAITQCIYHICCVMLESP 173
Query: 222 PRQ---------------VISISPAY----NYSAIRPAQPFVEPTSGQPL 252
P+ +++ AY NY+ PA P + SG PL
Sbjct: 174 PKGATIPYRPKPQVGGPVILAGGQAYTIQGNYAV--PATPDMNKLSGNPL 221
>gi|357117002|ref|XP_003560265.1| PREDICTED: uncharacterized protein LOC100827626 [Brachypodium
distachyon]
Length = 656
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + FR++ G +IGK+G I+ ET A+I + + + ERVI IS+ ++
Sbjct: 279 QQISFRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESPGK 338
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S ++A+ I D E + + R+L+ SQ L+G+ G I++
Sbjct: 339 HSKVQSAILCIF-------DRMEEVERNLMFGKPECSARVLVPKSQFSSLVGLGGAIIKE 391
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ S+GA I IL +P CAS E RV+QI+G++ V +AL + +LR +
Sbjct: 392 MVKSTGARIEILDEMDVPACASNCE--RVLQITGNLVNVRDALFVVSEKLRNH 442
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 15/178 (8%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-----NV 107
R+I+ +++G +IGK+G I+K REE+ A I I+D ER++ ++ ++
Sbjct: 77 RLIMQGKEVGSIIGKKGDNIKKFREESGAKINISDGSC--PERIVTVTGSTEAILKAFSL 134
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNI 165
++ + + L ++ + + H+ T+RL++ SQ G LIG G I
Sbjct: 135 IARKFEEMLSLLCLPVQTVGPTLQELQSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKI 194
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++R +GA+I + A LP + ++R V +SG A+ + +I + E+PP+
Sbjct: 195 KEIREVTGASIQV-ASEMLP-----NSTERAVTVSGTAEAITKCIYQICCVMMESPPK 246
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + +S
Sbjct: 172 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTVS 223
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RL++ G + G +IG G NI+K R SGA I I + +R+V ++G
Sbjct: 75 TVRLIMQGKEVGSIIGKKGDNIKKFREESGAKINI---------SDGSCPERIVTVTGST 125
Query: 204 PAVLNALVEIGNQLRE 219
A+L A I + E
Sbjct: 126 EAILKAFSLIARKFEE 141
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IGK G +I +IR+ + ATIKI+++ ++R + IS
Sbjct: 337 MTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTIS 383
>gi|345309017|ref|XP_001516066.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 679
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 28/225 (12%)
Query: 21 PRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80
P+ G RE G+ GS + K D RI+VP++ +G +IGKEG I+ + ++T+
Sbjct: 245 PQRTRRGGHSREQGQYPGSS--TQPKPLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQ 302
Query: 81 ATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+ + I + E+ + I ++ + + A + I ++ K+ D A ++
Sbjct: 303 SKVDIHRKENAGAAEKPITIHATPEGSS------EACRLILEIMQKEADETKSAEEIP-- 354
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+++L S G LIG G+N++K+ +G I I L + + +R +
Sbjct: 355 ------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTI----YNPERTIT 404
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+ G + A NA VEI +LRE V++++ P N SA+
Sbjct: 405 VKGSIEACSNAEVEIMKKLREAYENDVVAVNQQANLIPGLNLSAL 449
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G+ P + + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 494 GAFPHQHSVPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERM 553
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 554 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIK-------VPSSAAGR 601
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 602 VIGKGGKTVNELQNLTSAEVIV 623
>gi|383158165|gb|AFG61431.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 102 KDNDN-----VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
KDND+ + A++AL ++ ++I ++ S+ + A RLL+A SQ G
Sbjct: 5 KDNDDGDENEPICPAQDALLRVHSVIAQE--SSVKDKDNDADKKGQQNARLLVANSQIGS 62
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G NI+K+R SGA I I ++LP CA + D +V ISGD AV AL +
Sbjct: 63 LIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDAKAVKKALYSVSAF 120
Query: 217 LRENPPRQVISISPAYNYSAIRPA 240
L ++PP++ I +S I PA
Sbjct: 121 LYKHPPKEQIP------WSLILPA 138
>gi|392573629|gb|EIW66768.1| hypothetical protein TREMEDRAFT_65168 [Tremella mesenterica DSM
1558]
Length = 350
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P + + R +V +++ G +IGK G I IR +T ++ + ++RV
Sbjct: 14 SSPNGHSDEPQLSLRALVSTKEAGILIGKGGQTIADIRAKTNVKAGVSKVVPGVQDRVFS 73
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+S V A ++A L+L+ S+S G A ++RLLI+ + G +I
Sbjct: 74 VS-----GAVDHVAAAFAEVARLLLETPLSDSSLPPPPVG--AFTSVRLLISHNLMGTVI 126
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G SG I+++++ SGA +V + LP ++RVV+I G V A+ A++EIG L
Sbjct: 127 GRSGAKIKQIQDESGARMVA-SKEMLP-----QSTERVVEIQGSVEAIKTAVLEIGKCLM 180
Query: 219 ENPPRQVISI 228
E+ R ++
Sbjct: 181 EDWERNTGTV 190
>gi|432906521|ref|XP_004077571.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 434
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSSPERIVTITGPTEGIF-- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A IA +D + S V + T+RL+ GSQ G LIG G I+++R
Sbjct: 73 ---RAFSMIAQKFEEDITAAMTNSNVTSK--PPVTLRLVFPGSQCGSLIGKGGSKIKEIR 127
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 128 ETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPK 175
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R V ISG A++ + +I + E+P + V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGV 174
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 259 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 305
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERII---------TLA 62
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 63 GPTNAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 237 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 292
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R+I+ ++ G +IGK+G ++K RE++ A I I+D + ER++ ++ D +
Sbjct: 2 VTLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISD--SSCPERIVTVTG-TTDQIF- 57
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + ++ + V T+RL++ SQ G LIG G I+++R
Sbjct: 58 ---KAFTMICKKFEEDIVNTHNSTTLPKPPV---TLRLIVPASQCGSLIGKGGAKIKEIR 111
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA+I + A LP + ++R V +SG A+ + I + E+PP+
Sbjct: 112 ELTGASIQV-ASEMLP-----NSTERAVTVSGQADAITQCIYNICCVMLESPPK 159
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 19/180 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE----NPPRQV 225
S+GA + + A + LP + ++R V ISG A++ + +I + E +PPR V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEVQSKSPPRGV 178
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSE--ASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++QI ++L+ + S+V A A+ + + AG QA + G
Sbjct: 157 ----QCVKQICVVMLEVQSKSPPRGVSRVVAPKPASTPV--IFAGGQAYTIQG 203
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 263 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 309
>gi|115482006|ref|NP_001064596.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|78708635|gb|ABB47610.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639205|dbj|BAF26510.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|215693240|dbj|BAG88622.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612825|gb|EEE50957.1| hypothetical protein OsJ_31513 [Oryza sativa Japonica Group]
Length = 586
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P+ ++G VIG G R++++ EETKA ++ I A E VII + + D
Sbjct: 60 VFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKP 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ I+ DD + + + R+L QA LIG G I ++
Sbjct: 120 PAIDALLRVYECIINDDGLDVRYNNIVVA-------RILTPSEQAASLIGDQGSVINYIK 172
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I ++ + P+ A E D +++I G V AL + LR+
Sbjct: 173 KASKTNIHVIDGDLPPV---ALEDDMIIEIWGLPARVHQALELVACHLRK 219
>gi|297735477|emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 3/144 (2%)
Query: 77 EETKATIKIADAIARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKV 135
EET+A I++ D +R+++IS ++ +S A +A+ ++ + +S +
Sbjct: 3 EETRARIRVLDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAY 62
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A VA +IRLL+A +QA LIG G I+ ++ S+GA++ +L+ +++P A+A E R
Sbjct: 63 GAAGVAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADE--R 120
Query: 196 VVQISGDVPAVLNALVEIGNQLRE 219
+V++ G+ V AL + LR+
Sbjct: 121 IVELQGEALKVQKALEAVVGHLRK 144
>gi|346473549|gb|AEO36619.1| hypothetical protein [Amblyomma maculatum]
Length = 320
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
R D E P+ + V R ++ SR G +IGK G I +R+E KA+I + D
Sbjct: 20 RADNEAPNKRPRNSGGGRAVDVRFLLQSRNAGAIIGKGGTNINSLRKEFKASISVPDCPG 79
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIA 150
ER++ ++V+D + + +I K DD + + + +RLL+
Sbjct: 80 --PERIL--------SIVADLDTLGDILLNIIPKLDDFAQHTGQNGG---SESEMRLLMH 126
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
S AGC+IG +G I++LR S+GA I + C + E R+V+++G V++ +
Sbjct: 127 QSHAGCIIGRAGCRIKELRESTGANIKVHG----SCCPGSTE--RIVKVTGSPAVVVDCI 180
Query: 211 VEI 213
+I
Sbjct: 181 KQI 183
>gi|148665205|gb|EDK97621.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_b
[Mus musculus]
Length = 564
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 178 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 230
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 231 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 284
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 285 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 332
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 333 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 382
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
S+GA + + A + LP + ++R V ISG A++ + +I + E+P + V
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGV 174
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 292
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 15/164 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 162
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 240 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 286
>gi|348537598|ref|XP_003456280.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 593
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A I I++ ER+I I+ D V
Sbjct: 130 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGSC--PERIITITG-PTDCVF--- 183
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
A I L++D + VA G V + T+RL+I SQ G LIG G I+++
Sbjct: 184 -RAFTMI-TFKLEED----LMALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 237
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++GA + + A + LP + ++R V ISG A++ + I + E+PP+
Sbjct: 238 RETTGAQVQV-AGDLLP-----NSTEREVTISGSQDAIIQCVKLICTVILESPPK 286
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDN 104
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + IS +
Sbjct: 212 VTLRLVIPASQCGSLIGKGGSKIKEIRETTGAQVQVAGDLLPNSTEREVTISGSQD 267
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A I I + +R++ I+G
Sbjct: 129 TLRLLMHGKEVGSIIGKKGETVKRIREESSARINI---------SEGSCPERIITITGPT 179
Query: 204 PAVLNALVEIGNQLREN 220
V A I +L E+
Sbjct: 180 DCVFRAFTMITFKLEED 196
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A +Q +++P+ IG +IG++G +I +IR+ + A IKI I +R + IS
Sbjct: 376 ANSQTTSQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQIDSTSDRHVTIS 431
>gi|313239007|emb|CBY13992.1| unnamed protein product [Oikopleura dioica]
Length = 386
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV--IIISSKDNDNV 107
+ R ++PS+ G +IG+ G I+ +REE +A I I + AR ERV I ++S++ +
Sbjct: 96 IWCRFLIPSKVAGAIIGRGGATIRALREEYQAIINIPE--ARAPERVLKICVNSRETLHT 153
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + QIA ++ ++ S + G +R+L+ SQAG +IG G ++
Sbjct: 154 I------VSQIAEILKNENAKGSHNGRRKEGET---ELRILVQSSQAGAIIGTKGSTVKN 204
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI----------GNQL 217
LR ++G+ I I P C + S+RV I G V+ + I GN+
Sbjct: 205 LRETTGSRINI-----NPECC-PNSSERVAAIMGPPATVVKCISMIYDILERVPAKGNEQ 258
Query: 218 RENPPRQVISISPAYNYSAI 237
R +P P Y+Y
Sbjct: 259 RYDP----NMFDPTYDYGGY 274
>gi|198427864|ref|XP_002125995.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
[Ciona intestinalis]
Length = 402
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
R + + R+++PS G +IGK G I+ +R+E A +++ D+ ER++ +K
Sbjct: 42 REPSDKIELRVLIPSHTAGAIIGKGGANIRDLRQEFNANVQVPDSHGF--ERIVSAVAK- 98
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ DA N ++ + ++ KV +R+L+ SQAG +IG+ G
Sbjct: 99 ---TIEDAANICGKVVEAL---NERMHHPEKVGC-------LRMLVHKSQAGTIIGLKGS 145
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++LR +GA I + NQ C + +DRV Q+ G V+ + I L++ PP+
Sbjct: 146 RIKELREMTGANIKV---NQ-ECCPES--TDRVCQVRGTADVVVKCVARILEHLQQAPPK 199
Query: 224 QVI------SISPAYNYSAI 237
I +Y+Y
Sbjct: 200 GPIKNYDPNCFDDSYDYGGY 219
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ VIGK G RI++IRE++ A I I +A EERVI I+ N+ +A+
Sbjct: 332 QVTIPTSCAASVIGKTGQRIRQIREDSGAVIVIDEAGPGEEERVISITG--NEEQTQNAQ 389
Query: 113 NALQQIA 119
LQ+ A
Sbjct: 390 FLLQKNA 396
>gi|361066701|gb|AEW07662.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158160|gb|AFG61426.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158161|gb|AFG61427.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158162|gb|AFG61428.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158163|gb|AFG61429.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158164|gb|AFG61430.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158166|gb|AFG61432.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158167|gb|AFG61433.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158168|gb|AFG61434.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158169|gb|AFG61435.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158170|gb|AFG61436.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158171|gb|AFG61437.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158172|gb|AFG61438.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158173|gb|AFG61439.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158174|gb|AFG61440.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158175|gb|AFG61441.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158176|gb|AFG61442.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158177|gb|AFG61443.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D + + A++AL ++ ++I ++ S+ + A RLL+A SQ G LIG G
Sbjct: 11 DENEPICPAQDALLRVHSVIAQE--SSVKDKDNDADKKGQQNARLLVANSQIGSLIGKGG 68
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
NI+K+R SGA I I ++LP CA + D +V ISGD AV AL + L ++PP
Sbjct: 69 NNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDAKAVKKALYSVSAFLYKHPP 126
Query: 223 RQVISISPAYNYSAIRPA 240
++ I +S I PA
Sbjct: 127 KEQIP------WSLILPA 138
>gi|212275472|ref|NP_001130567.1| uncharacterized protein LOC100191666 [Zea mays]
gi|194689502|gb|ACF78835.1| unknown [Zea mays]
gi|413934214|gb|AFW68765.1| hypothetical protein ZEAMMB73_642279 [Zea mays]
Length = 580
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVV 108
+FR+++P++++G +IG +G R++++ EET+A ++ I + E+ VII + D +
Sbjct: 55 TVFRMLIPAQKVGAIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQLDEPL 114
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A +AL ++ + +D + V R+L QA LIG G I +
Sbjct: 115 PPAMDALLRVYQQTINNDSLDVGPDNVIVR-------RILAPSEQAASLIGEHGVMINSI 167
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L + P+ A E DRV++I G V AL + + LR+
Sbjct: 168 MEASQTDIRVLDDDLPPV---ALEEDRVIEIWGSPAGVYKALELVASHLRK 215
>gi|148665206|gb|EDK97622.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Mus musculus]
Length = 543
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 111 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 163
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 164 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 217
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 218 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 265
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 266 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 315
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 376 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 430
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 431 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 483
Query: 173 GATIVI 178
A +++
Sbjct: 484 SAEVIV 489
>gi|74215286|dbj|BAE41861.1| unnamed protein product [Mus musculus]
Length = 530
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 98 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 150
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 151 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 204
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 205 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 252
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 253 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 302
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 363 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 417
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 418 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 470
Query: 173 GATIVI 178
A +++
Sbjct: 471 SAEVIV 476
>gi|148665207|gb|EDK97623.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_d
[Mus musculus]
Length = 603
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 171 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 224 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 277
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 278 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 325
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 326 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 375
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 436 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 490
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 491 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 543
Query: 173 GATIVI 178
A +++
Sbjct: 544 SAEVIV 549
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 33/186 (17%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++
Sbjct: 19 AVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDCSC--PERIV--------- 67
Query: 107 VVSDAENALQQIAALILK---------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS + +A+ + LI K D++N++ IRL++ SQ G L
Sbjct: 68 TVSGSRSAIYKAFTLITKKFEEWCSQFQDNANTQGKPQIP-------IRLIVPASQCGSL 120
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+++R +G +I + A LP + ++R V +SG A+ + I +
Sbjct: 121 IGKGGSKIKEIREITGCSIQV-ASEMLP-----NSTERAVTLSGSAEAITQCIYHICCVM 174
Query: 218 RENPPR 223
E+PP+
Sbjct: 175 LESPPK 180
>gi|145207996|ref|NP_898850.2| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
gi|81889459|sp|Q5SF07.1|IF2B2_MOUSE RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|46577878|gb|AAT01428.1| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
Length = 592
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 315 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 364
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 479
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 480 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 173 GATIVI 178
A +++
Sbjct: 533 SAEVIV 538
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D SNS + A T+RL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISNSMTNSTATSKPPV-TMRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + ++G +++ + +I + E+PP+ V
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITVAGTPQSIIECVKQICIVMLESPPKGV 174
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G ++ A I +L E+
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED 82
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R
Sbjct: 228 QGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 287
Query: 97 IIIS 100
+ I+
Sbjct: 288 VTIT 291
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I+D ER++ I+
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISD--GSSPERIVTITG-------- 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + + A+I + + + AS + + + T+RL+ SQ G LIG G I++
Sbjct: 67 -ASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R S+GA + + A + LP ++R V ISG A+ + I + E+PP+
Sbjct: 126 IRESTGAQVQV-AGDLLP-----DSTERAVTISGTPHAITQCVKHICTVMLESPPK 175
>gi|148665204|gb|EDK97620.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Mus musculus]
Length = 596
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 164 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 216
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 217 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 270
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 271 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 318
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 319 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 368
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 429 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 483
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 484 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 536
Query: 173 GATIVI 178
A +++
Sbjct: 537 SAEVIV 542
>gi|392894107|ref|NP_497351.3| Protein PES-4 [Caenorhabditis elegans]
gi|373220643|emb|CCD73932.1| Protein PES-4 [Caenorhabditis elegans]
Length = 432
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 18/171 (10%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+ A
Sbjct: 75 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 130
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 131 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 182
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA+I + A LP H ++R V +SG A+ + ++ L E PP+
Sbjct: 183 GASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPK 227
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I+ IRE T A+I++A + H ER + +S
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSG------T 206
Query: 109 SDAEN-ALQQIAALILK 124
+DA N + Q+ ++L+
Sbjct: 207 ADAINLCMTQVCQILLE 223
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 123
Query: 204 PAVLNALVEIGNQLREN 220
+ A + N+ E+
Sbjct: 124 GVIGKAFNMVCNKFEED 140
>gi|41055221|ref|NP_957486.1| poly(rC)-binding protein 2 [Danio rerio]
gi|28279638|gb|AAH45508.1| Poly(rC) binding protein 2 [Danio rerio]
gi|37681899|gb|AAQ97827.1| poly(rC) binding protein 2 [Danio rerio]
gi|42744604|gb|AAH66603.1| Pcbp2 protein [Danio rerio]
Length = 318
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGV 174
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTIT 291
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 99/184 (53%), Gaps = 21/184 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+P I
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPKGVTI 175
Query: 227 SISP 230
P
Sbjct: 176 PYRP 179
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 269 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 328
Query: 95 RVIIIS 100
R + I+
Sbjct: 329 RQVTIT 334
>gi|293332893|ref|NP_001169297.1| uncharacterized protein LOC100383161 [Zea mays]
gi|224028485|gb|ACN33318.1| unknown [Zea mays]
Length = 664
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 94/179 (52%), Gaps = 14/179 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
+D++FRI+ P+ + ++ ++ ++ + ++++D + +ERV+II+S++ D+
Sbjct: 337 EDIIFRILCPNDKADSLVATRDGILEMLQTDVGVDVRLSDITSDSDERVLIITSREGPDH 396
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 397 ELFPAQEAVLHIQTHIV---DLGPDMDNII-------TTRLLVPASEIACFDGREG-SLS 445
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++ + A + IL LP CA ESD ++QI G++ A NAL+++ +LR R++
Sbjct: 446 DIQRQTSANVQILPREDLPSCAL--ESDELIQIVGEIKAARNALIQVTTKLRSFLYREM 502
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K + K+R+++ A + + A RVI + ++ D
Sbjct: 87 FRILCPE---CKAYSFSPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGCP 143
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVA------AGHVAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + A T RL++ GCL+G
Sbjct: 144 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDARDRGKTTTRLIVPKQHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL+ Q P C S+ S+ VVQ+ GD V A+ I ++L+
Sbjct: 204 KGGKIIEQMRMETKTHIRILSRGQHTPRCVSS--SEEVVQVVGDGNCVKKAVAIITDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G D + R K R+IVP + +G ++GK G I+++R ETK I+I + +H R
Sbjct: 178 GKDARDRGKTTT---RLIVPKQHVGCLLGKGGKIIEQMRMETKTHIRIL-SRGQHTPRC- 232
Query: 98 IISSKDNDNVVSDAENALQQIAALI 122
+ SS++ VV D N +++ A+I
Sbjct: 233 VSSSEEVVQVVGDG-NCVKKAVAII 256
>gi|308460519|ref|XP_003092563.1| CRE-PES-4 protein [Caenorhabditis remanei]
gi|308253083|gb|EFO97035.1| CRE-PES-4 protein [Caenorhabditis remanei]
Length = 436
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 18/171 (10%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+ A
Sbjct: 76 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 131
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 132 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 183
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA+I + A LP H ++R V +SG A+ + ++ L E PP+
Sbjct: 184 GASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPK 228
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I+ IRE T A+I++A + H ER + +S
Sbjct: 154 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSG------T 207
Query: 109 SDAEN-ALQQIAALILK 124
+DA N + Q+ ++L+
Sbjct: 208 ADAINLCMTQVCQILLE 224
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 74 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 124
Query: 204 PAVLNALVEIGNQLREN 220
+ A + N+ E+
Sbjct: 125 GVIGKAFNMVCNKFEED 141
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 187
Query: 223 RQV 225
+ V
Sbjct: 188 KGV 190
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++L+ N + + G TIRLL+ G + G +IG G++++K+R SGA I I
Sbjct: 4 VLLRRTLLNMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE 63
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
N C +R++ ++G A+ A I ++L E+ IS S + +A RP
Sbjct: 64 GN----CP-----ERIITLAGPTNAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 108
>gi|356528013|ref|XP_003532600.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 167
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS- 100
+ R V FR++ + ++G +IGK G I+ ++E T A I+I DA +RVI++S
Sbjct: 17 RSRHYTTHVTFRLLCHASRVGAIIGKSGVLIKSLQEATGAKIRIVDAPPDSPDRVILVSA 76
Query: 101 -SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI---RLLIAGSQAGC 156
S D +S A+ AL ++ +L VAAG + + RLL SQ G
Sbjct: 77 PSVTEDGELSTAQEALLKVFDRVL----------DVAAGTEVGDLVVSCRLLAETSQVGA 126
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+IG +G+ +EK+R +G I +L LP A SD +V++S
Sbjct: 127 VIGKAGKVVEKIRMDTGCKIRVLNEG-LP--AGTAPSDEIVEVS 167
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ V T+RL++ SQ G LIG
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDVPGSGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 127
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 128 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 181
Query: 222 PR 223
P+
Sbjct: 182 PK 183
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 274 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 333
Query: 95 RVIIIS 100
R + I+
Sbjct: 334 RQVTIT 339
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 187
Query: 223 RQV 225
+ V
Sbjct: 188 KGV 190
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++L+ N + + G TIRLL+ G + G +IG G++++K+R SGA I I
Sbjct: 4 VLLRRTLLNMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE 63
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
N C +R++ ++G A+ A I ++L E+ IS S + +A RP
Sbjct: 64 GN----CP-----ERIITLAGPTNAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 108
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 286 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 345
Query: 95 RVIIIS 100
R + I+
Sbjct: 346 RQVTIT 351
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+I+ +++G +IGK+G I+K RE++ A I I+D ER++ V+
Sbjct: 15 RMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISD--GSCPERIV---------TVTGTT 63
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ + +I K + + + + T+RL++ SQ G LIG G I+++R ++
Sbjct: 64 ECIHKAFTMICKKFEEDLQNTPTVPKPPV--TLRLVVPASQCGSLIGKGGSKIKEIRETT 121
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA+I + A LP + ++R V +SG A+ + I + + E+PP+
Sbjct: 122 GASIQV-ASEMLP-----NSTERAVTVSGTADAITLCIQNICSIMLESPPK 166
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A+I++A + + ER + +S
Sbjct: 92 VTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSG------T 145
Query: 109 SDAEN-ALQQIAALILKD 125
+DA +Q I +++L+
Sbjct: 146 ADAITLCIQNICSIMLES 163
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
V+ T+R+++ G + G +IG G NI+K R SGA I I + +R+V +
Sbjct: 9 VSLLTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINI---------SDGSCPERIVTV 59
Query: 200 SGDVPAVLNALVEIGNQLREN 220
+G + A I + E+
Sbjct: 60 TGTTECIHKAFTMICKKFEED 80
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D S S + A TIRL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISTSMTNSTATSKPPV-TIRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G ++ A I +L E+
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED 82
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R
Sbjct: 228 QGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 287
Query: 97 IIIS 100
+ I+
Sbjct: 288 VTIT 291
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 326
>gi|341891904|gb|EGT47839.1| CBN-PES-4 protein [Caenorhabditis brenneri]
Length = 438
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 18/171 (10%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+ A
Sbjct: 79 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 134
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 135 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 186
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA+I + A LP H ++R V +SG A+ + ++ L E PP+
Sbjct: 187 GASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPK 231
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I+ IRE T A+I++A + H ER + +S
Sbjct: 157 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSG------T 210
Query: 109 SDAEN-ALQQIAALILK 124
+DA N + Q+ ++L+
Sbjct: 211 ADAINLCMTQVCQILLE 227
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 77 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 127
Query: 204 PAVLNALVEIGNQLREN 220
+ A + N+ E+
Sbjct: 128 GVIGKAFNMVCNKFEED 144
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 268 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 327
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 328 EGSTDRQVTIT 338
>gi|380792097|gb|AFE67924.1| poly(rC)-binding protein 2 isoform f, partial [Macaca mulatta]
Length = 197
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 99/181 (54%), Gaps = 25/181 (13%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN------- 66
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 67 --AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQ 224
R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+
Sbjct: 124 RESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKG 177
Query: 225 V 225
V
Sbjct: 178 V 178
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIDKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTAHSIIECVKQICVVMLESPPKGV 174
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 244 ASAQACSHEMTIPNDLIGCIIGRQGAKISEIRQMSGAQIKIANPVDGSTDRQVTIT 299
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 245 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTIT 300
>gi|308321889|gb|ADO28082.1| poly(rc)-binding protein 2 [Ictalurus furcatus]
Length = 318
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S + G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLAGPTTAIFKAFSMIIDKLEED 82
>gi|318054596|ref|NP_001188110.1| poly(rC)-binding protein 2 [Ictalurus punctatus]
gi|308322769|gb|ADO28522.1| poly(rc)-binding protein 2 [Ictalurus punctatus]
Length = 318
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGV 174
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S + G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G A+ A I ++L E+
Sbjct: 56 ---ERIITLAGPTTAIFKAFSMIIDKLEED 82
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ + G T+RL++ SQ G LIG
Sbjct: 68 ---SIFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 124
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 125 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 178
Query: 222 PR 223
P+
Sbjct: 179 PK 180
>gi|157108094|ref|XP_001650073.1| heterogeneous nuclear ribonucleoprotein k [Aedes aegypti]
gi|108868581|gb|EAT32806.1| AAEL014959-PA [Aedes aegypti]
Length = 430
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 31/192 (16%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+R++ + R+++PS+ G +IGK GH IQK+R E +A + + D ERV+ I
Sbjct: 31 KRSRKDEEEVRLLIPSKMAGAIIGKAGHNIQKLRTEYQAQVNVGDCTG--PERVLTIG-- 86
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D E + + ++K D E +R+L+ S AGC+IG G
Sbjct: 87 ------GDME-TITNVVKDVMKHLDKAGENEY---------ELRILVHQSLAGCVIGRGG 130
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++L++ G + I + N P +DR+ Q+ G L AL +I ++ P
Sbjct: 131 TKIKELKDQIGCRLKIFS-NIAP-----QSTDRIAQVIGTEDQCLTALNDIIGLIQGTPI 184
Query: 223 RQVISISPAYNY 234
+ P +NY
Sbjct: 185 K-----GPVHNY 191
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 243 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 302
Query: 95 RVIIIS 100
R + I+
Sbjct: 303 RQVTIT 308
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGV 174
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTIT 291
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 96/178 (53%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERII---------TLA 62
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + A+I+ ++D S + A T+ L++ SQ G LIG G I++
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDIRSSMTNSTAASRPPVTLSLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQIFVVMLESPPKGV 174
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ + G T+RL++ SQ G LIG
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 127
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 128 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 181
Query: 222 PR 223
P+
Sbjct: 182 PK 183
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 240 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 295
>gi|354490197|ref|XP_003507246.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cricetulus
griseus]
Length = 322
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +R + I+
Sbjct: 240 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTIT 295
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ G LIG +G I+++R ++GA + + A + LP + ++R V +SG A++ +
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCV 163
Query: 211 VEIGNQLRENPPR 223
+I + E+PP+
Sbjct: 164 RQICAVILESPPK 176
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGTVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L SA S + + D+
Sbjct: 213 VSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQEFLVPNDL 252
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGSGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
>gi|328712758|ref|XP_003244898.1| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
D RI++ SR++G VIG G ++ IR ++ A + I++ ER++IIS N +
Sbjct: 27 DFTIRILLNSREVGNVIGIRGETVKNIRSQSGARVLISNG--STPERIVIISG----NTI 80
Query: 109 SDAENALQQIAALI-LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + LI LK ++ + + G T++L++ SQ G +IG +G I +
Sbjct: 81 -----AICRATELIGLKVEEFSERLNGNWIGPKTPLTLKLIVPASQCGFIIGKNGSKIRE 135
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R+SS A I++ N LP + ++R+V I+G + + + + N L ++PP S
Sbjct: 136 IRDSSRAAILV-GSNMLP-----NSTERLVSITGTTGTISHCVYLVCNVLLDSPPPNCES 189
Query: 228 IS 229
I+
Sbjct: 190 IA 191
>gi|395516948|ref|XP_003762645.1| PREDICTED: poly(rC)-binding protein 4 [Sarcophilus harrisii]
Length = 338
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSCARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ G LIG +G I+++R ++GA + + A + LP + ++R V +SG A++ +
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCV 163
Query: 211 VEIGNQLRENPPR 223
+I + E+PP+
Sbjct: 164 RQICAVILESPPK 176
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGTVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L SA S + + DV
Sbjct: 213 VSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQEFLVPNDV 252
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSMVP 233
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|291393785|ref|XP_002713277.1| PREDICTED: poly(rC) binding protein 4 [Oryctolagus cuniculus]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFPVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 162 -----CVRQICAVILES 173
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSTNQGFSVQGQYGTVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSMVP 233
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 162 -----CVRQICAVILES 173
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSTNQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSMVP 233
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|221114013|ref|XP_002155770.1| PREDICTED: poly(rC)-binding protein 3-like [Hydra magnipapillata]
Length = 313
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 25/176 (14%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNVVS 109
I+ S+ G +IGKEG I+++R+E+ A I ++ + ER++ I +S + + V
Sbjct: 8 LHFIILSQDAGGIIGKEGRNIRQMRDESGANINVSGSTG--VERILNIKGTSSEVKSAVR 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
LQ+I + SN+E +V T+RLL+ SQ G LIG GQ I+++R
Sbjct: 66 MVAEKLQEILS------GSNNE-------YVPPVTLRLLVPNSQCGPLIGKGGQRIKEIR 112
Query: 170 NSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+SGATI I P++ LP S+R V ++G A+ + +I + E P RQ
Sbjct: 113 EASGATITI--PSETLP-----GSSERSVTLAGSPEALGLCIAKIWDIFEEFPARQ 161
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIIS 100
V R++VP+ Q G +IGK G RI++IRE + ATI I ++ + ER + ++
Sbjct: 86 VTLRLLVPNSQCGPLIGKGGQRIKEIREASGATITIPSETLPGSSERSVTLA 137
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 28/195 (14%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G I+K REE+ A I I+D ER++ V+ + A+ +
Sbjct: 2 QEVGSIIGKKGDNIKKFREESGAKINISDGSC--PERIV---------TVTGSTEAILKA 50
Query: 119 AALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+LI + + S +S H+ T+RL++ SQ G LIG G I+++R + +
Sbjct: 51 FSLIARKFEEVSTSSHSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREARAS-- 108
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNYS 235
+ +A LP + ++R V +SG A+ + +I + E+PP+ I P
Sbjct: 109 IQVASEMLP-----NSTERAVTVSGTADAITKCIYQICCVMMESPPKGATIPYRP----- 158
Query: 236 AIRPAQPFVEPTSGQ 250
+PA P V GQ
Sbjct: 159 --KPAMPPVIFAGGQ 171
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R+IVP+ Q G +IGK G +I++IR E +A+I++A + + ER + +S
Sbjct: 77 VTLRLIVPASQCGSLIGKGGSKIKEIR-EARASIQVASEMLPNSTERAVTVS 127
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKDNDNVVSDAENA 114
+P+ IG +IGK G +I +IR+ + ATIKI+++ ++R + IS + + N+ N
Sbjct: 226 IPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLINT 285
Query: 115 LQQIAALILKDDDSNSEAS 133
++ + D SN AS
Sbjct: 286 SMELHKNLTLDLTSNHPAS 304
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 162 -----CVRQICAVILES 173
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|308798891|ref|XP_003074225.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116000397|emb|CAL50077.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 402
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDNV 107
+FR++ ++G +IG++G R++ I ET A +K+ + AR ER ++I ++D
Sbjct: 17 VFRVLCAETRVGGLIGRQGKRVRGIVTETGAQVKVLASTARCHERAVLIFAPRARDGPGD 76
Query: 108 VSDAENALQQIAALILK-----DDDSNSEASKVAA-------------------GHVAAN 143
A +++ + + +D+ + + G A+
Sbjct: 77 TCAAREGARRVVRYLTRARAVTEDECDGARDESEDESDDDDDGRRGDGVGGQDLGRSTAH 136
Query: 144 -TIRLLIAGSQAGCLIGMSGQNIEKLRN-SSGATIVILAPNQLPLCASAHESDRVVQISG 201
T+RLL+ QAG LIG G+NI+++R ++GA + + Q+P CA++ DRVV+I G
Sbjct: 137 VTLRLLVPAGQAGHLIGKGGENIQEVRKRANGAHVAVQEVGQVPPCATSE--DRVVEIHG 194
Query: 202 ---DVPAVLNALVE 212
DV +A+ E
Sbjct: 195 KPKDVRVAADAVFE 208
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 162 -----CVRQICAVILES 173
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|405120191|gb|AFR94962.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 365
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAQGAEHQLSLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSMVP 233
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|355709455|gb|AES03597.1| poly binding protein 4 [Mustela putorius furo]
Length = 206
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 29 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 77
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 78 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 137
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 138 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 185
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 111 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 170
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 171 -----CVRQICAVILES 182
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 28 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 78
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 79 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 109
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ S + P+ +P
Sbjct: 213 VTKLQQLSSHAVPFATPSMVP 233
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|449274935|gb|EMC83962.1| Poly(rC)-binding protein 4 [Columba livia]
Length = 324
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ ++IG +IGK+G +++IRE++ A I I++ ER+ I+ D V
Sbjct: 23 LTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITG-STDAVF- 78
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ IA + +D + S+ + V V T+RL+I SQ G LIG +G I ++R
Sbjct: 79 ---RAVSMIAFKLEEDLGAGSDGAAVGRSPV---TLRLVIPASQCGSLIGKAGAKIREIR 132
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
S+GA + + A + LP + ++R V +SG +++ + +I + E P S
Sbjct: 133 ESTGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIHCVRQICAVILEVPTE-----S 181
Query: 230 PAYNYSAIRPAQPFVEP 246
P + A ++ P
Sbjct: 182 PTQAWGAFPHQHGYLPP 198
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 20 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---------TIRLLIAGSQAGCLIGM 160
+ + + K ++ S+ + G A T+RL++ SQ G LIG
Sbjct: 73 ---SIFKAFTLICKKFEEWCSQFHDIQGGGNAGGGGGVPRPPITLRLIVPASQCGSLIGK 129
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+
Sbjct: 130 GGSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLES 183
Query: 221 PPR 223
PP+
Sbjct: 184 PPK 186
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 15/164 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 194
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 272 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 318
>gi|321257616|ref|XP_003193652.1| cytoplasm protein [Cryptococcus gattii WM276]
gi|317460122|gb|ADV21865.1| Cytoplasm protein, putative [Cryptococcus gattii WM276]
Length = 367
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAQGAEHQLSLRSLVSTKEAGIIIGKSGATIAAIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTSAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSMVP 233
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|417409319|gb|JAA51170.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 283
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 94/176 (53%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 58 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 106
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 107 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 166
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 167 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 216
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 142 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 201
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 202 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 252
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L SA S + + D+
Sbjct: 253 VTKLQQLSGHAVPFASPSVVPGLDPSAQTSSQEFLVPNDL 292
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 59 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 109
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 110 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 140
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 272 VPGLDPSAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 327
Query: 96 VIIIS 100
+ I+
Sbjct: 328 HVTIT 332
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSTNQGFSVQGQYGAVAPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|58266068|ref|XP_570190.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110914|ref|XP_775921.1| hypothetical protein CNBD3280 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258587|gb|EAL21274.1| hypothetical protein CNBD3280 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226423|gb|AAW42883.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 365
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAHGAEHQLSLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 96/178 (53%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D S S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISTSMTNSTATSKPPV-TMRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + ++G +++ + +I + E+PP+ V
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITVAGTPQSIIECVKQICIVMLESPPKGV 174
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R++ ++G ++ A I +L E+
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED 82
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 242 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 297
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 174 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 226
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 227 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 282
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 283 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 336
Query: 224 QVISI 228
+V++I
Sbjct: 337 RVMTI 341
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGMDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPAAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
I I+
Sbjct: 288 HITIT 292
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 93/174 (53%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sapiens]
Length = 397
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 25/177 (14%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ ER+ ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSFLERI---------TTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGQAGTKIKEIR 128
Query: 170 NSSGATIVI---LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + L PN ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQVAGDLFPN---------STERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IG+ G +I++IRE T A +++A D ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGQAGTKIKEIRETTGAQVQVAGDLFPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 162 -----CVRQICAVILES 173
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + L +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSFL---------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|296087074|emb|CBI33448.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 72 IQKIREETKATIKIADAIARHEERVIII--------SSKDNDNVVSDAENALQQIAALIL 123
I+++R +TK I+I + ++R EE V+ I + D+ VS ++AL ++ ++
Sbjct: 10 IKQLRVDTKFKIRIDETVSRCEELVVTIYNFSDETNAFDDSYTFVSPTQDALFRVHDKVV 69
Query: 124 KD---DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ + EAS+V T++LL+ Q GC+IG GQ I+ + + SGA I IL
Sbjct: 70 SEKVHSEDFEEASQV--------TVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYILK 121
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
+ L CA + D +VQISG+ P + +++
Sbjct: 122 NDHLLSCALSF--DELVQISGERPLLGRLFIKL 152
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 15/164 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 162
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED 82
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 240 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 286
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+RE++ A I I++ ER++ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTXXXXXXXIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGAPEAIIQCVKQICVVMLESPPK 174
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 250 GQTTPAFPGLDASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 309
Query: 94 ERVIIIS 100
ER I I+
Sbjct: 310 ERQITIT 316
>gi|355709446|gb|AES03594.1| Poly rC-binding protein 1 [Mustela putorius furo]
Length = 209
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|357124311|ref|XP_003563844.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 666
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
+++FRI+ P+ + ++G ++ ++ E +++ D + +ER +II+S++ D+
Sbjct: 341 EIIFRILCPNDKANNLVGSRDGILEMLQVEVGVDVRLTDLVVGSDERTVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A+ AL I I L D+ N T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEALLHIQTHIVDLGPDNDN------------IITTRLLVPSSEVACFEGRDG-SL 447
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL +LP CA ESD ++QI G + A +AL+++ ++R
Sbjct: 448 SDIQRQTSANVQILPREELPSCAL--ESDELIQIVGGIRAARSALMQVTTKIR 498
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDN 104
Q FRI+ P K G I K ++++ A I I A RVI ++ +D
Sbjct: 91 QATSFRILCPE---SKTYGFPASFIIKAQDDSGAIITIHAPFAGDPVRVIEMADGVPRDV 147
Query: 105 DN---VVSDAENALQQIAALILKD--DDSNSEASKVAAGHVAAN----TIRLLIAGSQAG 155
D + S A+ AL + IL+ DD + + G A + T RL++ G
Sbjct: 148 DGRPPMFSPAQEALIMVHRRILETEPDDGDEDGEYGPRGKDARDRGKVTTRLVVPRLHVG 207
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIG 214
CL+G G+ IE++R+ + I IL +Q P C S S+ VVQI G+ V A+ I
Sbjct: 208 CLLGKGGKIIEQMRSETKTHIRILPRDQNTPRCVSL--SEEVVQIVGEGNCVKKAVAIIS 265
Query: 215 NQLREN 220
++L+E+
Sbjct: 266 DRLKES 271
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 32 EDGEI--EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
EDGE G D + R K V R++VP +G ++GK G I+++R ETK I+I
Sbjct: 178 EDGEYGPRGKDARDRGK---VTTRLVVPRLHVGCLLGKGGKIIEQMRSETKTHIRI 230
>gi|307204634|gb|EFN83256.1| Heterogeneous nuclear ribonucleoprotein K [Harpegnathos saltator]
Length = 139
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 24/151 (15%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAETGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 105
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+R+L+ SQAGC+IG G I++LR S
Sbjct: 106 --DVRMLVHQSQAGCIIGKGGLKIKELREVS 134
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ +RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D
Sbjct: 28 DELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSD 78
Query: 203 VPAVLNALVEIGNQLRENPPRQ 224
+P VL L E+ L EN R
Sbjct: 79 LPTVLQVLNEVVPNLEENGSRH 100
>gi|358056167|dbj|GAA97907.1| hypothetical protein E5Q_04587 [Mixia osmundae IAM 14324]
Length = 531
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 21/202 (10%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+ + P +A+A ++ R +V SR+ G VIG++G + IRE+ + ++ + ERV
Sbjct: 130 QAASPPGQAEAPTLIMRALVSSREAGIVIGRQGKNVADIREKAQVKAGVSKLVPGVSERV 189
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKD-----DDSNSEASKVAAGHVAANTIRLLIAG 151
+ ++ + +S A I I+ + +DS S + ++ + T+RLLI+
Sbjct: 190 LTVTGQ-----ISGVARAFGLICQTIMDNSSGIPNDSPSTYTGLSGSTL---TLRLLISS 241
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+Q G +IG +G I+ ++ +SG T + + LP ++R+V+ISG V A+
Sbjct: 242 AQMGGVIGKAGTKIKSIQQTSG-TRMAASKELLP-----QSTERLVEISGRPEQVEKAVA 295
Query: 212 EIGNQLRENPPRQV--ISISPA 231
EI L E+ + V I+ PA
Sbjct: 296 EIAKALVEDEAKAVGTIAFHPA 317
>gi|260814700|ref|XP_002602052.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
gi|229287357|gb|EEN58064.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
Length = 499
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQD-VLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
D GKR ED EG +R + V RI++ S+ G +IGK+G I+++R E KAT
Sbjct: 19 DQEGKRPAED---EGGQSNKRPRPPPPVDLRILLQSKNAGAIIGKQGLNIKRLRSEYKAT 75
Query: 83 IKIADAIARHEERVIIISSKDNDN---------VVSDAENALQQIAALILKDDDSNSEAS 133
+ + D ER++ IS+ N V+ D + Q+ KD + N E
Sbjct: 76 VTVPDCTG--PERILTISADLNTACACLLDIIPVLEDYQKHYQE-----HKDLNFNCE-- 126
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+R+L+ SQAGC+IG +G I++LR + A I + + C +
Sbjct: 127 -----------LRMLVHQSQAGCIIGRAGFKIKELREQTEANIKVYSE-----CMPG-ST 169
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENP 221
+RVV ++G + A+ +I L++ P
Sbjct: 170 ERVVALTGKPEKCVGAIKKIIELLQKAP 197
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IG+ G RI+ IRE ++A IKI + + +R+I IS DND + +A+
Sbjct: 411 QVTIPKELAGSIIGRGGSRIRTIRERSEAQIKIDEPLPGSTDRIITISG-DNDQ-IRNAQ 468
Query: 113 NALQQIAALIL 123
LQ+ ++ L
Sbjct: 469 FLLQESCSVNL 479
>gi|332027896|gb|EGI67951.1| Heterogeneous nuclear ribonucleoprotein K [Acromyrmex echinatior]
Length = 172
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 24/159 (15%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAEAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 105
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+R+L+ SQAGC+IG +G I++LR S + I+
Sbjct: 106 --DVRMLVHQSQAGCIIGKAGLKIKELREVSHSFSTIMT 142
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D+P
Sbjct: 30 LRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSDLP 80
Query: 205 AVLNALVEIGNQLRENPPRQ 224
VL L E+ L EN R
Sbjct: 81 TVLQVLNEVVPNLEENGSRH 100
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 113 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 165
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 166 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 221
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 222 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 275
Query: 224 QVISI 228
+V++I
Sbjct: 276 RVMTI 280
>gi|147789222|emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
Length = 587
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A V FR++ + +IG VIGK G +++++ +T A I++ D+ + + RVI++ + + N
Sbjct: 48 AGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVN 107
Query: 107 VVSDAENALQQIAA-----LILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIG 159
+ + +++ A +L+ + E + V G + RLL SQ G +IG
Sbjct: 108 RRIALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIG 167
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
G+ +EK+R SG+ I +L +LP CA++ +D +V+ SG +
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAAS--TDEMVEHSGSL 209
>gi|410970837|ref|XP_003991883.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Felis catus]
Length = 493
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 273
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A VEI +LRE +++++ Y S++ P F
Sbjct: 274 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQF 309
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 310 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 369
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 370 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 417
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 418 VIGKGGKTVNELQNLTSAEVIV 439
>gi|327265639|ref|XP_003217615.1| PREDICTED: poly(rC)-binding protein 4-like [Anolis carolinensis]
Length = 422
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 95/176 (53%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 28 LTLRMLMHGKEVGSIIGKKGETVKRIREQSTARITISE--GSCPERITTITGS------T 79
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEK 167
DA + A L++D + G V+ T+RL+I SQ G LIG +G I++
Sbjct: 80 DAVFRAVSMIAFKLEEDLGT---GAINGGTVSKPPVTLRLVIPASQCGSLIGKAGAKIKE 136
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 137 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIIQCVRQICAVILESPPK 186
>gi|30681758|ref|NP_850026.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|330252232|gb|AEC07326.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 632
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N ++
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R +SGA I +L P P+C + ++D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGT--KNDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLRENPP 222
V ALV + + ++ N P
Sbjct: 198 VKKALVMVSSYIQNNAP 214
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V+F+II S G +IGK+G I+ ++ ET A+I + + ERV+ +S+++N ++
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NAL + A ++ D + G + +LL+ A G N E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKT--KLLVPSHFANSFNGNG--NREAI 392
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-PPRQVI 226
++GA + I NQ+ S E++ V++I G+ V AL + ++LREN P++V+
Sbjct: 393 I-ATGADVHISVGNQVLEWIS--ENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
>gi|4314357|gb|AAD15568.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 649
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N ++
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R +SGA I +L P P+C + ++D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGT--KNDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLRENPP 222
V ALV + + ++ N P
Sbjct: 198 VKKALVMVSSYIQNNAP 214
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V+F+II S G +IGK+G I+ ++ ET A+I + + ERV+ +S+++N ++
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NAL + A ++ D + G + +LL+ A G N E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKT--KLLVPSHFANSFNGNG--NREAI 392
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-PPRQVI 226
++GA + I NQ+ S E++ V++I G+ V AL + ++LREN P++V+
Sbjct: 393 I-ATGADVHISVGNQVLEWIS--ENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
>gi|449473856|ref|XP_004186185.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC) binding protein 4
[Taeniopygia guttata]
Length = 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 20/187 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 11 GGSPEETELSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSTARITISE--GSCPERIT 68
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
I+ D V A+ IA + ++D + V+AG A T+RL+I SQ G L
Sbjct: 69 TITG-STDAVF----RAVSMIAFKL--EEDLGAGGDGVSAGR-APVTLRLVIPASQCGSL 120
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG +G I ++R S+GA + + A + LP + ++R V +SG VP + +++ Q+
Sbjct: 121 IGKAGAKIREIRESTGAQVQV-AGDLLP-----NSTERAVTVSG-VP---DTIIQCVRQI 170
Query: 218 RENPPRQ 224
+P Q
Sbjct: 171 CLDPSSQ 177
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + V
Sbjct: 106 VTLRLVIPASQCGSLIGKAGAKIREIRESTGAQVQVAGDLLPNSTERAV---------TV 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S + + Q I D S S + + L+ GC+IG G I ++
Sbjct: 157 SGVPDTIIQCVRQICLDPSSQSSSQE------------FLVPNDLIGCIIGRHGSKISEI 204
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
R SGA I I NQ + S+R V I+G
Sbjct: 205 RQMSGAHIKI--GNQ-----TEGSSERHVTITG 230
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DP ++ +Q+ L VP+ IG +IG+ G +I +IR+ + A IKI + ER + I
Sbjct: 173 DPSSQSSSQEFL----VPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTI 228
Query: 100 S 100
+
Sbjct: 229 T 229
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 15/164 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 194
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R+V I+G A+ A I + E+
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED 114
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 272 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 318
>gi|403260495|ref|XP_003922705.1| PREDICTED: poly(rC)-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 302
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
>gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens]
Length = 299
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|345796407|ref|XP_003434167.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 1 [Canis lupus familiaris]
Length = 488
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 166
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 167 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 212
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 213 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 268
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A VEI +LRE +++++ Y S++ P F
Sbjct: 269 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQF 304
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 305 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 364
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 365 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 412
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 413 VIGKGGKTVNELQNLTSAEVIV 434
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 97/177 (54%), Gaps = 21/177 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R S+GA + + A + LP + ++R + I+G +++ + +I + E P+
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLEVSPQ 172
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 268 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 327
Query: 95 RVIIIS 100
R + I+
Sbjct: 328 RQVTIT 333
>gi|158293805|ref|XP_315123.4| AGAP005015-PA [Anopheles gambiae str. PEST]
gi|157016622|gb|EAA10478.5| AGAP005015-PA [Anopheles gambiae str. PEST]
Length = 447
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 31/192 (16%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+R ++++ R+++PS+ G +IGK GH IQK+R E +A + + D ERV+ I
Sbjct: 49 KRMRSEEQEVRLLIPSKMAGAIIGKGGHNIQKLRTEYQAQVNVGDCTG--PERVLTIGG- 105
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D + V ++ ++ + D ++E +R+LI S AGC+IG G
Sbjct: 106 DMETVTKVVKDVMKHL------DRAGDNEYE-----------LRILIHLSLAGCVIGRGG 148
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I+++++ G + I + +P +DR+ Q+ G L L EI ++ P
Sbjct: 149 SKIKEIKDEIGCRLKIFS--NIP----PQSTDRIAQVIGSEEQCLKTLNEIIKLIKGTPI 202
Query: 223 RQVISISPAYNY 234
+ P +NY
Sbjct: 203 K-----GPVHNY 209
>gi|170592745|ref|XP_001901125.1| KH domain containing protein [Brugia malayi]
gi|158591192|gb|EDP29805.1| KH domain containing protein [Brugia malayi]
Length = 354
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 29/197 (14%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 48 TAGKRQRQD-----SYQKALADGKYEL-RLLVTSRGAGAIIGKKGESVKNIQTECDATVS 101
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + ++ +
Sbjct: 102 VPD--SQTPERVV--------QLVAAVENVVKCVEMIIARIDEVHDNQNR-------DSE 144
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + ++R++QI+G
Sbjct: 145 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSE------CCPQSTERIIQINGKPE 198
Query: 205 AVLNALVEIGNQLRENP 221
++ LV I N L+E P
Sbjct: 199 KIVACLVTIINTLKEIP 215
>gi|194222666|ref|XP_001498933.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Equus caballus]
Length = 620
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 29/241 (12%)
Query: 6 EITVNPTVSVVTEPEPRHDVSGKRR-REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P+ G RE G G +A+ D RI+VP++ +G +
Sbjct: 172 KISYIPDEEVSSPPPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAI 229
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ I ++T++ + I + E+ V I ++ + + A + I ++
Sbjct: 230 IGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIM 283
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A ++ +++L G LIG G+N++K+ + +G I I +
Sbjct: 284 QKEADETKLAEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQ 335
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L S + +R + + G V A NA +EI +LRE +++++ P N SA
Sbjct: 336 DL----SIYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA 391
Query: 237 I 237
+
Sbjct: 392 L 392
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 440 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 499
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 500 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 547
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 548 KGGKTVNELQNLTSAEVIV 566
>gi|148223980|ref|NP_001082843.1| uncharacterized protein LOC557028 [Danio rerio]
gi|94732695|emb|CAK10813.1| novel protein similar to human IGF-II mRNA-binding protein 2
(IMP-2) [Danio rerio]
gi|167614340|gb|ABZ89742.1| IGF-II mRNA-binding protein 2b variant 1 [Danio rerio]
gi|167614342|gb|ABZ89743.1| IGF-II mRNA-binding protein 2b variant 2 [Danio rerio]
Length = 436
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 25 VSGKRRREDGE--IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
V+G R +E G+ G R + Q++ RI+VP++ +G +IGKEG I+ I ++T++
Sbjct: 2 VTGSREQEFGQPGAMGGPQGPRQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSK 61
Query: 83 IKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV 140
+ I + E+ + I SSK+ Q +IL+ + + +K+ V
Sbjct: 62 VDIHRKENAGATEKAITIHSSKE----------GCSQACRMILEIMEKEANDTKI----V 107
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+++L S G LIG G+N++K+ +G I I A L + + +R + +
Sbjct: 108 EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDL----TVYNQERTISVR 163
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
G V A EI +LRE V S++ N A
Sbjct: 164 GGVEECCKAEGEIMKKLREAHENDVASVNQQTNMMA 199
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+ L I G LIG GQ+I++L + +GA+I I AP S E +R+V I+G
Sbjct: 265 VYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPE------SPDEPERMVIITGPPE 318
Query: 205 AVLNALVEIGNQLRE 219
A A I +L+E
Sbjct: 319 AQFKAQGRIYGKLKE 333
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDN 106
Q+V++ + +P+ +G +IGK+G I+++ A+IKIA + E ER++II+
Sbjct: 262 QEVVY-LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGP---- 316
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVA-AGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+A+ Q LK+++ + +V H+ + + AG +IG G+ +
Sbjct: 317 --PEAQFKAQGRIYGKLKEENFFTAKEEVKLEAHIK-------VPSTAAGRVIGKGGKTV 367
Query: 166 EKLRNSSGATIVI 178
+L+N + A +++
Sbjct: 368 NELQNLTSAEVIV 380
>gi|307185703|gb|EFN71619.1| Heterogeneous nuclear ribonucleoprotein K [Camponotus floridanus]
Length = 143
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAEAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D ERV+ IS SD LQ +L + N E ++ G +
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQ-----VLNEVVPNLEETRFQNGSRHGS 106
Query: 144 ---TIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+R+L+ SQAGC+IG G I++LR S
Sbjct: 107 DEIDVRMLVHQSQAGCIIGKGGLKIKELREVS 138
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ +RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D
Sbjct: 28 DELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSD 78
Query: 203 VPAVLNALVEIGNQLREN 220
+P VL L E+ L E
Sbjct: 79 LPTVLQVLNEVVPNLEET 96
>gi|402592326|gb|EJW86255.1| hypothetical protein WUBG_02833 [Wuchereria bancrofti]
Length = 313
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 29/197 (14%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 21 TAGKRQRQD-----SYQKALADGKYEL-RLLVTSRGAGAIIGKKGESVKNIQTECDATVS 74
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + + +
Sbjct: 75 VPD--SQTPERVV--------QLVAAVENVVKCVEMIIARIDEVHDNQDR-------DSE 117
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + C + E R++QI+G
Sbjct: 118 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYS----ECCPQSTE--RIIQINGKPE 171
Query: 205 AVLNALVEIGNQLRENP 221
++ LV I N L+E P
Sbjct: 172 KIVACLVTIINTLKEIP 188
>gi|72013105|ref|XP_781909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 447
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 21/188 (11%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
GKR ED + + + + R ++FR+++ S G VIGK G I+++R + A + I
Sbjct: 12 GGKRSAED-QRQNQNKRPRGDYNQIIFRLMIRSINAGGVIGKGGENIKRLRVDYDAKVSI 70
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D ER+I I +++ DN + ++ + + D N+ + I
Sbjct: 71 PDCNG--PERIIKIGTRNVDNAIDCIKDIIPSVGEKKHSQDQQNN------------SFI 116
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+++ S AG +IG +G I++LR +GA + C + +DRVVQ++G
Sbjct: 117 RIMVHQSHAGAIIGRAGFKIKELREKTGAHFKVYT----ETCPKS--TDRVVQLTGSPDV 170
Query: 206 VLNALVEI 213
+ A E+
Sbjct: 171 IAKAAREV 178
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ G +IG+ G RI++IR ++ A IKI D ++ ++R+I I+ +D ++ A+
Sbjct: 372 QVTIPNDLAGSIIGRGGQRIKRIRMQSGAQIKIDDPLSGAKDRIITITGTQHD--IAHAK 429
Query: 113 NALQ 116
LQ
Sbjct: 430 FLLQ 433
>gi|301759725|ref|XP_002915743.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Ailuropoda melanoleuca]
Length = 556
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A VEI +LRE +++++ Y S++ P F
Sbjct: 337 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQF 372
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 55 LTLRMLMQGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGS-----TA 107
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+A+ IA + D+D S + T+RL+I SQ G LIG +G I+++R
Sbjct: 108 AVFHAVSMIAFKL--DEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 165
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 166 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 213
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 139 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 198
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 199 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 249
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 250 VTKLQQLSGHAVPFASPSMVP 270
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 269 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 324
Query: 96 VIIIS 100
+ I+
Sbjct: 325 HVTIT 329
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 56 TLRMLMQGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 106
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 107 AAVFHAVSMIAFKLDED-----LCSAPANGGTVSRP 137
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 66 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 121
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 122 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 175
Query: 224 QVISI 228
+V++I
Sbjct: 176 RVMTI 180
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 266 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 325
Query: 95 RVIIIS 100
R + I+
Sbjct: 326 RQVTIT 331
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|218200638|gb|EEC83065.1| hypothetical protein OsI_28176 [Oryza sativa Indica Group]
gi|222640076|gb|EEE68208.1| hypothetical protein OsJ_26373 [Oryza sativa Japonica Group]
Length = 431
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 25/172 (14%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+++ R++ P+ +IG VIGK G I+ IR+E+ A I + D+ EE +I I+S +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE---AT 177
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA++A + A L+L+ ++ KV GCLIG G + +
Sbjct: 178 DDAKSAAVE-AVLLLQSKINDDNEGKV------------------IGCLIGKGGSIVNDM 218
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
R+ + A I I + + P AS+ SD +V++ G+V + +ALV+I +LR++
Sbjct: 219 RSKTKAAIYI-SKGEKPRKASS--SDELVEVFGEVENLRDALVQIVLRLRDD 267
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 66 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 121
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 122 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 175
Query: 224 QVISI 228
+V++I
Sbjct: 176 RVMTI 180
>gi|50311087|ref|XP_455567.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644703|emb|CAG98275.1| KLLA0F10703p [Kluyveromyces lactis]
Length = 417
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R++ +Q KV+G +G R+ +I+ ET I ++D I ERVI + K +
Sbjct: 69 LRMLCLMKQASKVVGGKGERVNRIKSETNTRINVSDNINGVMERVIFVRGK-----CEEV 123
Query: 112 ENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +I I DDDSN + + + LLI GC+IG G + ++
Sbjct: 124 ARAFGKIVRAINNESDDDSNERSLPLV--------VNLLIPHHFMGCIIGRQGSRLHEIE 175
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ S A + + +P QLP+ +DR++ ++G A+ A IG + EN
Sbjct: 176 DLSAARL-MASPQQLPM-----SNDRILSLTGVADAIHIATYYIGQTILEN 220
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
+ + ++ +G VIGK G IQ+I++ T IKI D + +ER +++
Sbjct: 336 VFIDNKFVGNVIGKGGKNIQQIKQSTGCMIKINDPVEGLDERKLVL 381
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
>gi|296491333|tpg|DAA33396.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 2
[Bos taurus]
Length = 556
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQF 372
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGS-----TAAV 72
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+A+ IA + D+D S + T+RL+I SQ G LIG +G I+++R +
Sbjct: 73 FHAVSMIAFKL--DEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 131 TGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 12/140 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEA---SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
++QI A+IL+ + ++ G V + + SQ G G++ +
Sbjct: 162 -----CVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQSQYG---GVTPAEV 213
Query: 166 EKLRNSSGATIVILAPNQLP 185
KL+ SG + +P+ +P
Sbjct: 214 TKLQQLSGHAVPFGSPSMVP 233
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCSAPANGGTVSRP 100
>gi|242039711|ref|XP_002467250.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
gi|241921104|gb|EER94248.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
Length = 588
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P++++G +IG +G R++++ EET+A ++ I + E+ VII + + +
Sbjct: 56 VFRMLIPAQKVGVIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQPEEPLP 115
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ + D+ + + V R+L+ QA LIG G I +
Sbjct: 116 PAMDALLRVYQQTINDESLDVGSDGVIVR-------RILVPSEQAESLIGEHGVMINSIM 168
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L + P+ A E DRVV+I G V AL + + LR+
Sbjct: 169 EASQTDIRVLDGDLPPV---ALEEDRVVEIWGLPARVHKALELVASHLRK 215
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK G I+ IR+ + A I I+D ER++ I+ V
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSC--PERIVTITGN-----VD 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + + V + T+RL++ +Q G LIG G I+++R
Sbjct: 76 TINKAFSMICNKF--QEDMQALPNSVPKPPI---TMRLIVPATQCGSLIGKGGSKIKEIR 130
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA+I + A LP ++R V ISG A++ + I + L E PP+
Sbjct: 131 EATGASIQV-ASEMLP-----SSTERAVTISGSADAIVLCMQHICHILLEAPPK 178
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ DD ++S +V+ TIRLL+ G + G +IG G +I+ +R+ SGA I I
Sbjct: 4 SCVVLDDAASSSVPQVSV----ILTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI- 58
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G+V + A I N+ +E+
Sbjct: 59 --------SDGSCPERIVTITGNVDTINKAFSMICNKFQED 91
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 17 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + G V+ T+RL+I SQ G LIG +G I++
Sbjct: 66 GSTGAVFHAVSMIAFKLDEDLCTGPPNGGSVSKPPVTLRLVIPASQCGSLIGKAGAKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R S+GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 126 IRESTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 175
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 270 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQTEGSGER 325
Query: 96 VIIIS 100
+ I+
Sbjct: 326 HVTIT 330
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + ++ G+++ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCSATANGGNISRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 176
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P +P
Sbjct: 213 VTKLQQLSGHAVPFASPGMVP 233
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G + G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI +
Sbjct: 230 GMVPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG 285
Query: 94 ERVIIIS 100
ER + I+
Sbjct: 286 ERHVTIT 292
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 25/174 (14%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++K+REE+ A I I++ ER+I ++ N A+ +
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKA 52
Query: 119 AALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA
Sbjct: 53 FAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 111
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQV 225
+ + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 112 VQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV 159
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 130
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 220 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 275
>gi|396578134|ref|NP_001257528.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform 2
[Rattus norvegicus]
Length = 524
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
++ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 92 LSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 144
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 145 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 198
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 199 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 246
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A +A +EI +LRE +++++ P N SA+
Sbjct: 247 ERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 296
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 357 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 411
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 412 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 464
Query: 173 GATIVI 178
A +++
Sbjct: 465 SAEVIV 470
>gi|449509689|ref|XP_002192903.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Taeniopygia guttata]
Length = 531
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 29/241 (12%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P R G RE G G + K D R++VP++ +G +
Sbjct: 74 KISYIPDEEVSSPPPPQRSRRGGHSSRERGSSPGGS--WQPKQLDFPLRMLVPTQFVGAI 131
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ + ++T++ + I + E+ + I ++ + A + I ++
Sbjct: 132 IGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDIM 185
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A +V +++L S G LIG G+N++K+ +G I I
Sbjct: 186 QKEADETKSAEEVP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQ 237
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L + + +R + + G A NA VEI +LRE V++++ P N SA
Sbjct: 238 DLTI----YNPERTITVKGSTEACSNAEVEIMKKLREAYENDVVAVNQQANLIPGLNLSA 293
Query: 237 I 237
+
Sbjct: 294 L 294
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA-RHEERV 96
G+ P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 347 GAFPHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERM 406
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + AG
Sbjct: 407 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGR 454
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 455 VIGKGGKTVNELQNLTSAEVIV 476
>gi|146197849|dbj|BAF57636.1| hnRNP K protein [Dugesia japonica]
Length = 337
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 26/209 (12%)
Query: 33 DGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
D E S R K+Q + R ++PS+ G VIGK G I+ +R A I I+D
Sbjct: 2 DSSNESSGHSRSKKSQPCIELRFLIPSKAAGSVIGKSGENIRNLRRMFMARINISDNSG- 60
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALI----LKDDDSNSEASKVAAGHVAANTIRL 147
ER++ + + D D ++ L+++ I D N + V +R+
Sbjct: 61 -PERILSLEA-DLDTILEILTQCLEKMEGCIPLPRAGSGDCNDSINHV--------DLRM 110
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ S G LIG G I LR ++ + P +DR+VQ+ G +P V+
Sbjct: 111 LVNQSLVGALIGRGGGRINDLREKCDLRVLKVYQTVCP-----DSTDRIVQLVGAIPLVI 165
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSA 236
+ + +I + +E P R+ P NY A
Sbjct: 166 DCIGKIVDMCKETPVRE-----PKVNYDA 189
>gi|396578132|ref|NP_001257527.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform 1
[Rattus norvegicus]
gi|149019899|gb|EDL78047.1| similar to IGF-II mRNA-binding protein 2 (predicted) [Rattus
norvegicus]
Length = 592
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 33/230 (14%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
++ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 LSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G + A +A +EI +LRE +++++ P N SA+
Sbjct: 315 ERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 364
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 479
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 480 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 173 GATIVI 178
A +++
Sbjct: 533 SAEVIV 538
>gi|32564028|ref|NP_491825.2| Protein F26B1.2, isoform c [Caenorhabditis elegans]
gi|373218907|emb|CCD64193.1| Protein F26B1.2, isoform c [Caenorhabditis elegans]
Length = 380
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 36 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCT--------VTADEK 85
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+L+ S AG LIG +G I++LR
Sbjct: 86 TVLNILKDVLPRLEDNFSERDPCE--------VRMLVHQSHAGALIGRNGSKIKELREKC 137
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + PA
Sbjct: 138 SARLKIFTG-----CAPG-STDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPA 191
Query: 232 YNY 234
+NY
Sbjct: 192 FNY 194
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 35 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 85
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 86 TVLNILKDVLPRLEDN 101
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK G I+ IR+ + A I I+D ER++ I+ V
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSC--PERIVTITGN-----VD 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + + V + T+RL++ +Q G LIG G I+++R
Sbjct: 76 TINKAFSMICNKF--QEDMQALPNSVPKPPI---TMRLIVPATQCGSLIGKGGSKIKEIR 130
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA+I + A LP ++R V ISG A++ + I + L E PP+
Sbjct: 131 EATGASIQV-ASEMLP-----SSTERAVTISGSADAIVLCMQHICHILLEAPPK 178
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ DD ++S +V+ TIRLL+ G + G +IG G +I+ +R+ SGA I I
Sbjct: 4 SCVVLDDAASSSVPQVSV----ILTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI- 58
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ +R+V I+G+V + A I N+ +E+
Sbjct: 59 --------SDGSCPERIVTITGNVDTINKAFSMICNKFQED 91
>gi|72164650|ref|XP_794805.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 341
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V FR++V S + G VIGK G I+++R E AT+ I D+ +RV+ I V +
Sbjct: 9 VTFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNIPDSSG--PDRVLQI-------VAN 59
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHV--AANTIRLLIAGSQAGCLIGMSGQNI 165
EN L I LI +++ E S + G T+ +L+ SQ G +IG G I
Sbjct: 60 SRENGLDIIKELIPLIRE-----EVSPFSDGEADPYTTTLSVLVQTSQVGAIIGRGGSKI 114
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++LR S+ + +L LP + ++R VQI+G AVL A+ EI E P
Sbjct: 115 KELRQSTETKVKVLQ-ECLP-----YSTERRVQINGAPDAVLLAIGEIYVTCSEAP 164
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ +G VIG+ G RI+ IR ++A I+IA+ + E+RVI I + VS A+
Sbjct: 269 QVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITI--RGTQEQVSHAQ 326
Query: 113 NALQ 116
LQ
Sbjct: 327 FLLQ 330
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IR+E+ A IKI + ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILE--GNCPERIITLTGPTNA---- 67
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ A +I K ++D NS +K A T+RL++ +Q G LIG G I+++
Sbjct: 68 ----IFKAFAMIIYKLEEDINSSMTKSTAASRLV-TLRLVVPATQCGSLIGKGGCKIKEI 122
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
R S+GA + + A + LP + ++R + I+G VP + V+
Sbjct: 123 RKSTGAQVQV-AGDMLP-----NSTERAITIAG-VPQSVTKCVK 159
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHE 93
+I S K A ++ V R++VP+ Q G +IGK G +I++IR+ T A +++A D +
Sbjct: 82 DINSSMTKSTAASRLVTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQVAGDMLPNST 141
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
ER I I+ V ++QI L++ + S+S KV
Sbjct: 142 ERAITIA-----GVPQSVTKCVKQI-CLVMLETLSHSPQGKV 177
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I IL N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLREN 220
A+ A I +L E+
Sbjct: 66 NAIFKAFAMIIYKLEED 82
>gi|25144314|ref|NP_740869.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
gi|373218905|emb|CCD64191.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
Length = 397
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCT--------VTADEK 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+L+ S AG LIG +G I++LR
Sbjct: 103 TVLNILKDVLPRLEDNFSERDPCE--------VRMLVHQSHAGALIGRNGSKIKELREKC 154
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + PA
Sbjct: 155 SARLKIFTG-----CAPG-STDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPA 208
Query: 232 YNY 234
+NY
Sbjct: 209 FNY 211
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 103 TVLNILKDVLPRLEDN 118
>gi|149018652|gb|EDL77293.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018654|gb|EDL77295.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018655|gb|EDL77296.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018656|gb|EDL77297.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018658|gb|EDL77299.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018659|gb|EDL77300.1| rCG25644, isoform CRA_a [Rattus norvegicus]
Length = 183
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 94/181 (51%), Gaps = 19/181 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E P ++ S
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEEPLSRITRAS 182
Query: 230 P 230
P
Sbjct: 183 P 183
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL++
Sbjct: 162 -----CVRQICAVILEE 173
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|148222025|ref|NP_001090223.1| neuro-oncological ventral antigen 2 [Xenopus laevis]
gi|49256115|gb|AAH72959.1| Nova1 protein [Xenopus laevis]
Length = 413
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 28 KRRREDGEIEGSDPKRR---AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
++R + E + KR A+ ++ ++++PS G +IGK G I +++ ET ATIK
Sbjct: 9 RKRPLETPTEATSTKRSNTAAEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIK 68
Query: 85 IA---DAIARHEERVIIISSKDN-----DNVVSDAENALQQ------IAALILKDDDSNS 130
++ D ERV ++ N +++ + Q + L+ N+
Sbjct: 69 LSKSKDFYPGTTERVCLVQGSAEALLSVHNFIAEKVREVPQGAPKNDLGVLLPPQSTINA 128
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E +K A +L++ + AG +IG G + + SGA + + +Q P ++
Sbjct: 129 ERAKQA---------KLIVPNTTAGLIIGKGGATVRNIMEESGAWVQL---SQKPAGSNL 176
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
HE RVV +SG+ V A+ I ++ RE+PP+ ++ +Y
Sbjct: 177 HE--RVVTVSGEPSQVQKAIHSIIHKSREDPPQGTTHLNISY 216
>gi|410970839|ref|XP_003991884.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Felis catus]
Length = 542
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A VEI +LRE +++++ P N SA+
Sbjct: 280 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|410970835|ref|XP_003991882.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Felis catus]
Length = 536
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A VEI +LRE +++++ P N SA+
Sbjct: 274 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 308
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|358255903|dbj|GAA57520.1| heterogeneous nuclear ribonucleoprotein K, partial [Clonorchis
sinensis]
Length = 1085
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 25/162 (15%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121
G +IGK G IQ+IREE + I D+ ERV+++ D + L+
Sbjct: 3 GVIIGKGGENIQRIREEYSVKVMIPDS--NGPERVLVLDG--------DLGSVLEIFVEN 52
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ + ++ E +RLL+ SQAGC+IG G I++LR SG + L
Sbjct: 53 LERMQNNRDEGVD----------LRLLVHQSQAGCIIGRGGYKIKELREQSG--LQTLKV 100
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
Q+ LC + +DRV+Q+ GD+ V++ L I L PP+
Sbjct: 101 YQM-LCPGS--TDRVIQLVGDLDKVVDCLQAIAELLEGAPPK 139
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ V ++ IG ++G+ G RI ++R+E+ A IKI+ E+R+I I+ + +A+
Sbjct: 282 QVSVSNKMIGAIMGRAGVRINQVRQESNADIKISRQEPGVEDRIITITGTPEQ--IQNAQ 339
Query: 113 NALQQIAALILKDDDSN 129
LQ L+ +N
Sbjct: 340 FLLQMWKILVSCSSSTN 356
>gi|345796405|ref|XP_535832.3| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 2 [Canis lupus familiaris]
Length = 531
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 166
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 167 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 212
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 213 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 268
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A VEI +LRE +++++ P N SA+
Sbjct: 269 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 303
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 348 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 407
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 408 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 455
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 456 VIGKGGKTVNELQNLTSAEVIV 477
>gi|395839827|ref|XP_003792777.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Otolemur garnettii]
Length = 554
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEE 94
+G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+
Sbjct: 179 QGHGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEK 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 239 PVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLV 284
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G+N++K+ + +G I I + L S + +R + + G V A NA +EI
Sbjct: 285 GRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIM 340
Query: 215 NQLRENPPRQVISISPAYNY-SAIRPAQPF 243
+LRE +++++ Y S++ P F
Sbjct: 341 KKLREAFENDMLAVNTHSGYFSSLYPHHQF 370
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 374 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 433
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 434 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 481
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 482 KGGKTVNELQNLTSAEVIV 500
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 99/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
NA+ + A+I L++ S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 66 ---NAIFKAFAMIIDKLEEVFSSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E V S S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEE-----VFSSSMTNSTAASRP 96
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 243 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 302
Query: 95 RVIIIS 100
R + I+
Sbjct: 303 RQVTIT 308
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIA 119
++G +IGK G I+ IR+++ A I I+D ER++ I+ + A I
Sbjct: 1 EVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITGS-----IGTINKAFGMIC 53
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
A + D + + + + T+RL++ +Q GC+IG G I+++R ++GA+I +
Sbjct: 54 AKL--QQDLQALPNSIPKPPI---TMRLIVPATQCGCIIGKGGTKIKEIREATGASIQV- 107
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
A LP ++R V ISG ++++ + I L E PP+
Sbjct: 108 ASEMLP-----SSTERAVTISGSADSIVDCMRNICQILLEAPPK 146
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS D++V
Sbjct: 72 ITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQVASEMLPSSTERAVTISG-SADSIV 130
Query: 109 SDAENALQ 116
N Q
Sbjct: 131 DCMRNICQ 138
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 38/197 (19%)
Query: 29 RRREDGEIEGSDPKRRAKAQDV------LFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
+R DG+ G + KR ++ DV RI++ S+ G +IGK G I+++R E A
Sbjct: 27 KRPADGDYNG-NVKRMRESSDVDSNAPTTLRILIQSKDAGGIIGKGGTNIRRLRTEYNAV 85
Query: 83 IKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
+ + D ERV+ I++ ++AL +A ++ K +V GH
Sbjct: 86 VNVPDT--NSNERVLTITAP--------RQSALDILAEVVPK-------IGEVQYGH--- 125
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
I++L+ SQ G +IG +G I+++R SGA + + A + LP + ++RVV +SG
Sbjct: 126 -EIQMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFA-DCLP-----NSTERVVTMSGS 178
Query: 203 ----VPAVLNALVEIGN 215
V V N LV I N
Sbjct: 179 AETIVKCVENVLVAIAN 195
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSDA 111
+++V Q+G +IG+ G++I++IRE + A +K+ AD + ERV+ +S + +V
Sbjct: 128 QMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFADCLPNSTERVVTMSGSA-ETIVKCV 186
Query: 112 ENALQQIAALILK 124
EN L IA LK
Sbjct: 187 ENVLVAIANAPLK 199
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI+ IR A IKI D + +R+I I+ N ++ A+
Sbjct: 347 QVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLPGSNDRIITITG--NQEQINHAQ 404
Query: 113 NALQQ 117
LQQ
Sbjct: 405 YLLQQ 409
>gi|281354032|gb|EFB29616.1| hypothetical protein PANDA_003725 [Ailuropoda melanoleuca]
Length = 434
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 42 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 99
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 100 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 145
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 146 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 201
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A VEI +LRE +++++ P N SA+
Sbjct: 202 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 236
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 281 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 340
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 341 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 388
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 389 VIGKGGKTVNELQNLTSAEVIV 410
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 98/179 (54%), Gaps = 20/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG-NQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLEQSPPKGV 175
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVDGSADRQVTIT 291
>gi|301759723|ref|XP_002915742.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Ailuropoda melanoleuca]
Length = 599
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A VEI +LRE +++++ P N SA+
Sbjct: 337 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|255559157|ref|XP_002520600.1| conserved hypothetical protein [Ricinus communis]
gi|223540199|gb|EEF41773.1| conserved hypothetical protein [Ricinus communis]
Length = 161
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D ++R+IVP ++G +IG++G I+++ ET+A I+I D +R+++IS K+ +
Sbjct: 26 DNVYRLIVPVAKVGSIIGRKGELIKQMCIETRARIRILDGPPSISDRIVLISGKEEPEAA 85
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + +A+ A A +++RLL+A SQA LIG G I+
Sbjct: 86 LSPAIDAVLRVFKRVSGPSAGEGDATGSAVAGAAFSSVRLLVASSQAINLIGKQGSTIKS 145
Query: 168 LRNS 171
+ S
Sbjct: 146 ILES 149
>gi|71895775|ref|NP_001025686.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
gi|62205009|gb|AAH93475.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
Length = 413
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 31/225 (13%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
++R + E + KR A + + ++++PS G +IGK G I +++ ET ATIK
Sbjct: 9 RKRPLETPTEATSTKRSNTAGEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIK 68
Query: 85 IA---DAIARHEERVIIISSKDND-----NVVSDAENALQQ------IAALILKDDDSNS 130
++ D ERV ++ N +++ + Q + L+ N+
Sbjct: 69 LSKSKDFYPGTTERVCLVQGSAESLLSVHNFIAEKVREVPQGGTKNDLGVLLPPQTTINA 128
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E +K A +L++ + AG +IG G + + SGA + + +Q P +
Sbjct: 129 ERAKQA---------KLIVPNTTAGLIIGKGGATVRSIMEESGAWVQL---SQKPAGPNL 176
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS 235
HE RVV +SG+ V A+ I ++ RE+PP+ ++ +Y S
Sbjct: 177 HE--RVVTVSGEPSQVQKAIRSIIHKSREDPPQGTTHLNISYTNS 219
>gi|361066699|gb|AEW07661.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+A SQ G LIG G NI+K+R SGA I I ++LP CA + D +V ISGD A
Sbjct: 52 RLLVANSQIGSLIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDATA 109
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
V AL + L ++ P++ I +S I PA
Sbjct: 110 VKKALYAVSAFLYKHLPKEQIP------WSLILPA 138
>gi|196049606|pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 21/165 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN------- 57
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 58 --AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 114
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
R S+GA + + A + LP + ++R + I+G +++ + +I
Sbjct: 115 RESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQI 153
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 6 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 56
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 57 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 87
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 140
>gi|327267261|ref|XP_003218421.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Anolis carolinensis]
Length = 576
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 34/234 (14%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
V+ P+P R G RE G G S PK+ D RI+VP++ +G +IGKEG
Sbjct: 159 VSSPQPPQRSRRGGHSSREQGPSPGGSSQPKQL----DFPLRILVPTQFVGAIIGKEGLT 214
Query: 72 IQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129
I+ + ++T++ + I + E+ + I ++ + A + I ++ K+ +
Sbjct: 215 IKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDIMQKEAEET 268
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
A ++ +++L S G LIG G+N++K+ +G I I L +
Sbjct: 269 KSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTI--- 317
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+ +R + + G + A NA EI N+LRE +++++ P N +A+
Sbjct: 318 -YNPERTITVKGSIEACSNAEAEIMNKLREAYENDIVTVNQQANLIPGLNLNAL 370
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA-RHEERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 408 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPEASERMVIITGPPEAQF----- 462
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 463 KAQGRIFGKLKEENFFNPKEEVKLEAHIK-------VPSSAAGRVIGKGGKTVNELQNLT 515
Query: 173 GATIVI 178
A +++
Sbjct: 516 SAEVIV 521
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 92/174 (52%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + +PP+
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILGSPPK 176
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILGSPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 213 VTKLQQLSGHAVPFASPSVVP 233
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|326935642|ref|XP_003213877.1| PREDICTED: poly(rC)-binding protein 2-like, partial [Meleagris
gallopavo]
Length = 168
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 22/168 (13%)
Query: 61 IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAA 120
+G +IGK G ++K+REE+ A I I++ ER+I ++ N A+ + A
Sbjct: 1 VGSIIGK-GKSVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKAFA 48
Query: 121 LI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+I L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA +
Sbjct: 49 MIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 107
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 108 V-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 149
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 73 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 124
>gi|350591798|ref|XP_003483335.1| PREDICTED: replication factor C (activator 1) 4, 37kDa [Sus scrofa]
Length = 578
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 156 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 213
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 214 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 259
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 260 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 315
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 316 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 350
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 395 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 454
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 455 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 502
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 503 VIGKGGKTVNELQNLTSAEVIV 524
>gi|326925691|ref|XP_003209044.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Meleagris gallopavo]
Length = 502
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 32/242 (13%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEG-SDPKRRAKAQDVLFRIIVPSRQIGK 63
+++ P V + P P R G RE G G S PK+ D R++VP++ +G
Sbjct: 77 KVSYIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSQPKQL----DFPLRMLVPTQFVGA 132
Query: 64 VIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ + ++T++ + I + E+ + I ++ + A + I +
Sbjct: 133 IIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDI 186
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 187 MQKEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL 238
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L + + +R + + G A NA VEI +LRE +++++ P N S
Sbjct: 239 QDLTI----YNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLS 294
Query: 236 AI 237
A+
Sbjct: 295 AL 296
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA-RHEERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 334 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQF----- 388
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + AG +IG G+ + +L+N +
Sbjct: 389 KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGRVIGKGGKTVNELQNLT 441
Query: 173 GATIVI 178
A +++
Sbjct: 442 SAEVIV 447
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 21/165 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN------- 66
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 67 --AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
R S+GA + + A + LP + ++R + I+G +++ + +I
Sbjct: 124 RESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQI 162
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 38/185 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISS------- 101
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 102 --KDNDNVVSDAEN------------------ALQQIAALILKDDDSNSEASKVAAGHVA 141
K V+ +A A+QQ + + ++ A A+
Sbjct: 158 CVKQICVVMLEAYTIQGQYAIPQPDLTKLHQLAMQQ-SHFPMTHGNTGFSAGLDASAQTT 216
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
++ L I GC+IG G I ++R SGA I I P + +DR V I+G
Sbjct: 217 SH--ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-------GSTDRQVTITG 267
Query: 202 DVPAV 206
++
Sbjct: 268 SAASI 272
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 211 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 266
>gi|363737066|ref|XP_003641794.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Gallus gallus]
Length = 564
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 111/243 (45%), Gaps = 33/243 (13%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P V + P P R G RE G G S PK+ D R++VP++ +G
Sbjct: 138 KVSYIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQPKQL----DFPLRMLVPTQFVG 193
Query: 63 KVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAA 120
+IGKEG I+ + ++T++ + I + E+ + I ++ + A + I
Sbjct: 194 AIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILD 247
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++ K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 248 IMQKEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISP 299
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNY 234
L + + +R + + G A NA VEI +LRE +++++ P N
Sbjct: 300 LQDL----TIYNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNL 355
Query: 235 SAI 237
SA+
Sbjct: 356 SAL 358
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 396 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQF----- 450
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + AG +IG G+ + +L+N +
Sbjct: 451 KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGRVIGKGGKTVNELQNLT 503
Query: 173 GATIVI 178
A +++
Sbjct: 504 SAEVIV 509
>gi|440899520|gb|ELR50813.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Bos grunniens
mutus]
Length = 597
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 175 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 232
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 233 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 278
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 279 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 334
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 335 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 369
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 414 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 473
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 474 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 521
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 522 VIGKGGKTVNELQNLTSAEVIV 543
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S+GA + + A + LP + +++ + I+G +V + +I + E IS
Sbjct: 123 IRKSTGAQVQV-AGDMLP-----NSTEQAITIAGMPQSVTECVKQICLVMLE-----TIS 171
Query: 228 ISPAYNYSAIRPAQPF 243
SP I P QP
Sbjct: 172 QSPQGRVMTI-PYQPM 186
>gi|312085525|ref|XP_003144713.1| hypothetical protein LOAG_09137 [Loa loa]
Length = 327
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 39/222 (17%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A+ + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 21 TAGKRQRQD-----SYQKALAEGKYEL-RLLVTSRGAGAIIGKKGESVKNIQAECDATVS 74
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + + +
Sbjct: 75 VPD--SQTPERVV--------QLVATVENVVRCVEMIIARIDEVHDNQDR-------DSE 117
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + ++R++QI+G
Sbjct: 118 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSE------CCPQSTERIIQINGKPE 171
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
++ LV I + L+E P + P+ Y +I F +P
Sbjct: 172 KIVACLVTIISTLKEIPIK-----GPSRPYESI-----FFDP 203
>gi|300795407|ref|NP_001179433.1| insulin-like growth factor 2 mRNA-binding protein 2 [Bos taurus]
gi|296491332|tpg|DAA33395.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 1
[Bos taurus]
Length = 599
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G V A NA +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|353243541|emb|CCA75070.1| related to poly(rC)-binding protein 3 [Piriformospora indica DSM
11827]
Length = 631
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQD L R +V ++ G +IGK G + +RE+T ++ +A ERV+ ++
Sbjct: 274 AQDTLTLRALVGTKDAGIIIGKAGKNVADLREQTGVKAGVSKVVAGVHERVLSVTGS--- 330
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
V A I ++ S++ A + H IRLLI+ + G +IG +G I
Sbjct: 331 --VQGVAKAYTTILQQLVTSSPSSTTAPANPSNHT---IIRLLISHNLMGTIIGRNGLKI 385
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ +++SSGA +V + LP ++R+V++ G A+ A+ EIG L E+ R +
Sbjct: 386 KNIQDSSGARMVA-QKDMLP-----QSTERIVEVQGSPEAIGKAIEEIGKCLLEDWERGL 439
Query: 226 ISI 228
++
Sbjct: 440 GTV 442
>gi|332215033|ref|XP_003256641.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Nomascus leucogenys]
gi|397470079|ref|XP_003806661.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Pan paniscus]
gi|179479950|gb|ACB86627.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 493
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 274 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 309
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 310 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 369
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 370 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 417
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 418 VIGKGGKTVNELQNLTSAEVIV 439
>gi|119598616|gb|EAW78210.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_b
[Homo sapiens]
Length = 428
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
>gi|432934409|ref|XP_004081928.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Oryzias latipes]
Length = 600
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 20/184 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEER 95
GS R + QD RI+VP++ +G +IGKEG I+ + ++T++ + I + E+
Sbjct: 176 GSYSSPRPRQQDFPLRILVPTQFVGAIIGKEGLTIKNVTKQTQSKVDIHRKENAGAAEKP 235
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+ I S+ + +A + I ++ K+ + ++ +++L S G
Sbjct: 236 ITIHSTPEG------CSSACRMILDIMQKEANETKTNEEIP--------LKILAHNSLVG 281
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG G+N++K+ +G I I + L +C +R + + G + A A VEI
Sbjct: 282 RLIGKEGRNLKKIEEETGTKITISSLQDLTIC----NPERTITVKGSLEACCKAEVEIMK 337
Query: 216 QLRE 219
+L+E
Sbjct: 338 KLKE 341
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 21/165 (12%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 421 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 479
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 480 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 527
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPA 205
G+ + +L+N + A VI+ +Q+P E+D V V+ISG A
Sbjct: 528 GKTVNELQNLTSAE-VIVPRDQIP-----DENDEVFVKISGHFFA 566
>gi|74177637|dbj|BAE38921.1| unnamed protein product [Mus musculus]
Length = 464
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L LK D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLKSDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|332215031|ref|XP_003256640.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Nomascus leucogenys]
Length = 556
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|197101075|ref|NP_001125573.1| insulin-like growth factor 2 mRNA-binding protein 2 [Pongo abelii]
gi|75041981|sp|Q5RB68.1|IF2B2_PONAB RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|55728499|emb|CAH90992.1| hypothetical protein [Pongo abelii]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|313151207|ref|NP_998159.2| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 429
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+GKR +D E E P +R++ D V RI++ S+ G VIGK G I+ +R + AT+
Sbjct: 19 NGKRSADDSEEE--KPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ ++ + AE L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSVSA----DIPTVAEILLKIIPTL---------EEYQHHKGVDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR+S+ TI + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQ----ECCPQS--TDRVVLVGGKA 175
Query: 204 PAVLNAL 210
V+ +
Sbjct: 176 ERVVQCI 182
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITG--TQDQIQ 411
Query: 110 DAENALQQIAALIL 123
+A+ LQ A +L
Sbjct: 412 NAQYLLQNSALHLL 425
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 125 DDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
D +S+ ++S + G + + T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 331 DSNSSWDSSYQSGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKID 390
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
P Q DR++ I+G + NA + N
Sbjct: 391 EPLQ-------GSEDRIITITGTQDQIQNAQYLLQN 419
>gi|148689196|gb|EDL21143.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689197|gb|EDL21144.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689198|gb|EDL21145.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
Length = 244
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 22/201 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+ P +S
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEHHP---VS 177
Query: 228 ISPAYNYSAIRPAQPFVEPTS 248
P Y F+ P S
Sbjct: 178 SEPLPRYCPPLGQPGFLCPGS 198
>gi|32451938|gb|AAH54653.1| Heterogeneous nuclear ribonucleoprotein K [Danio rerio]
gi|182890942|gb|AAI65841.1| Hnrnpk protein [Danio rerio]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+GKR +D E E P +R++ D V RI++ S+ G VIGK G I+ +R + AT+
Sbjct: 19 NGKRSADDSEEE--KPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKDIKALRTDYNATV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ ++ + AE L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSVSA----DIPTVAEILLKIIPTL---------EEYQHHKGVDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR+S+ TI + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQ----ECCPQS--TDRVVLVGGKA 175
Query: 204 PAVLNAL 210
V+ +
Sbjct: 176 ERVVQCI 182
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ +
Sbjct: 342 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQD----- 396
Query: 110 DAENALQQ---IAALIL 123
+NAL Q + +LIL
Sbjct: 397 QIQNALYQPPTVCSLIL 413
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I P Q DR++ I+G
Sbjct: 343 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQ-------GSEDRIITITGTQ 395
Query: 204 PAVLNALVE 212
+ NAL +
Sbjct: 396 DQIQNALYQ 404
>gi|109042331|ref|XP_001095005.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Macaca mulatta]
gi|402860701|ref|XP_003894761.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Papio anubis]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|56118219|ref|NP_001007226.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform b [Homo
sapiens]
gi|4883681|gb|AAD31596.1|AF057352_1 hepatocellular carcinoma autoantigen [Homo sapiens]
gi|119598615|gb|EAW78209.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Homo sapiens]
gi|410223072|gb|JAA08755.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251294|gb|JAA13614.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302888|gb|JAA30044.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342485|gb|JAA40189.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++++ Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|212542979|ref|XP_002151644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
gi|210066551|gb|EEA20644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
Length = 367
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
E GE+E AQ VL R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 ESGELEDQPKTEEEYAQAVLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A +V G V N IR
Sbjct: 89 GVHDRVLTVTGG-----LQGCARAYSIVAKGLLEG------APQVGMGGVVQNNGTHPIR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPRQVISI--SPAYNYSAIRPAQP 242
A+ EIG L ++ R ++ +PA S QP
Sbjct: 192 EKAVWEIGKCLIDDWQRGTGTVLYNPAVRVSVGGSGQP 229
>gi|268570691|ref|XP_002640810.1| C. briggsae CBR-PES-4 protein [Caenorhabditis briggsae]
Length = 447
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+ A
Sbjct: 77 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 132
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 133 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 184
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GA+I + A LP H ++R V +SG A+ + ++ L E
Sbjct: 185 GASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLE 225
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I+ IRE T A+I++A + H ER + +S
Sbjct: 155 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSG------T 208
Query: 109 SDAEN-ALQQIAALILK 124
+DA N + Q+ ++L+
Sbjct: 209 ADAINLCMTQVCQILLE 225
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 75 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 125
Query: 204 PAVLNALVEIGNQLREN 220
+ A + N+ E+
Sbjct: 126 GVIGKAFNMVCNKFEED 142
>gi|395536709|ref|XP_003770354.1| PREDICTED: uncharacterized protein LOC100914843 [Sarcophilus
harrisii]
Length = 1087
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 22/201 (10%)
Query: 21 PRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80
PR RE G G +AK D RI+VP++ +G +IGKEG I+ + ++T+
Sbjct: 506 PRSRRGDYSSREHGHSPGGP--AQAKQLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQ 563
Query: 81 ATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+ + I + E+ V I +S + A A + I ++ K+ D ++
Sbjct: 564 SKVDIHRKENAGASEKPVTIHASPEG------ASEACRMILEIMQKEADETKAVEEIP-- 615
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+++L S G LIG G+N++K+ +G I I L + + +R +
Sbjct: 616 ------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDL----TIYNPERTIT 665
Query: 199 ISGDVPAVLNALVEIGNQLRE 219
+ G + A +A VEI +LRE
Sbjct: 666 VKGPIEACSSAEVEIMRKLRE 686
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA-RHEERVIIISSKDNDN 106
Q+V++ + +P++ +G +IGK+GH I+++ A+IKIA ER++II+
Sbjct: 910 QEVVY-LFIPTQAVGAIIGKKGHHIKQLARFAGASIKIAPPEGPEASERMVIITGPPEAQ 968
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A +I + +++ N + H+ + S AG +IG G+ +
Sbjct: 969 F-----KAQGRIFGKLKEENFFNPKEEVKLKAHIR-------VPSSAAGRVIGKGGKTVN 1016
Query: 167 KLRNSSGATIVI 178
+L N + A +++
Sbjct: 1017 ELHNLTSAEVIV 1028
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 26/183 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G + K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESV-KMREESGARINISEG--NCPERIITLAGPTN----- 65
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 66 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 120
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 121 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 174
Query: 223 RQV 225
+ V
Sbjct: 175 KGV 177
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 242 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 301
Query: 95 RVIIIS 100
R + I+
Sbjct: 302 RQVTIT 307
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+++ K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESV-KMREESGARINISEGN----CP-----ERIITLAGPT 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 65 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 95
>gi|240281620|gb|EER45123.1| KH domain RNA-binding protein [Ajellomyces capsulatus H143]
Length = 275
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPRQVISI 228
+ A+ EIG L ++ R ++
Sbjct: 186 GIEKAVWEIGKCLIDDWQRGTGTV 209
>gi|395839831|ref|XP_003792779.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Otolemur garnettii]
Length = 574
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEE 94
+G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+
Sbjct: 179 QGHGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEK 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 239 PVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLV 284
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G+N++K+ + +G I I + L S + +R + + G V A NA +EI
Sbjct: 285 GRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIM 340
Query: 215 NQLRENPPRQVISIS------PAYNYSAI 237
+LRE +++++ P N SA+
Sbjct: 341 KKLREAFENDMLAVNQQANLIPGLNLSAL 369
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 407 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 461
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 462 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 514
Query: 173 GATIVI 178
A +++
Sbjct: 515 SAEVIV 520
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 23/176 (13%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G +++IREE+ A I I++ ER+I ++ N A+ +
Sbjct: 4 KEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN---------AIFKA 52
Query: 119 AALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R S+GA +
Sbjct: 53 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 112
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVISI 228
+ A + LP + ++R + I+G +V + +I L ++P +V++I
Sbjct: 113 QV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 162
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 79 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 133
Query: 109 SDAENALQQIAALILK 124
++QI ++L+
Sbjct: 134 QSVTECVKQICLVMLE 149
>gi|387915114|gb|AFK11166.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 436
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 13/196 (6%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR ED + E + + R Q V R+++ S+ G VIGK G I+ +R + A++ + D
Sbjct: 26 KRPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSVPD 85
Query: 88 AIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
+ ER++ I++ + +++S L+++ + E+ + G +
Sbjct: 86 SSG--PERILSINADIETIGDILSKIIPTLEEVRCVHFH---HLQESYQHYKGKDFDCEL 140
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L+ SQAG +IG+ G I++LR S+ TI + H +DRVV + G
Sbjct: 141 RMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQE------CCPHSTDRVVLLGGKPDR 194
Query: 206 VLNALVEIGNQLRENP 221
V+ + I L E+P
Sbjct: 195 VVECIKIIMGLLSESP 210
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 362 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ--IQ 419
Query: 110 DAENALQQIAALIL 123
+A+ LQ +
Sbjct: 420 NAQYLLQNSCSSFF 433
>gi|395839829|ref|XP_003792778.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Otolemur garnettii]
Length = 575
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEE 94
+G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+
Sbjct: 179 QGHGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEK 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 239 PVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLV 284
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G+N++K+ + +G I I + L S + +R + + G V A NA +EI
Sbjct: 285 GRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIM 340
Query: 215 NQLRENPPRQVISIS------PAYNYSAI 237
+LRE +++++ P N SA+
Sbjct: 341 KKLREAFENDMLAVNQQANLIPGLNLSAL 369
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 408 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 462
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 463 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 515
Query: 173 GATIVI 178
A +++
Sbjct: 516 SAEVIV 521
>gi|395839825|ref|XP_003792776.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Otolemur garnettii]
Length = 597
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEE 94
+G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+
Sbjct: 179 QGHGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEK 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 239 PVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLV 284
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G+N++K+ + +G I I + L S + +R + + G V A NA +EI
Sbjct: 285 GRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIM 340
Query: 215 NQLRENPPRQVISIS------PAYNYSAI 237
+LRE +++++ P N SA+
Sbjct: 341 KKLREAFENDMLAVNQQANLIPGLNLSAL 369
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 417 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 476
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 477 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 524
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 525 KGGKTVNELQNLTSAEVIV 543
>gi|348582424|ref|XP_003476976.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Cavia porcellus]
Length = 532
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 6 EITVNPTVSVVTEPEPRHDVSGKRR-REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P+ G RE G G +A+ D RI+VP++ +G +
Sbjct: 84 KISYIPDEEVSSPPPPQGAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAI 141
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ I ++T++ + I + E+ V I ++ + + A + I ++
Sbjct: 142 IGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIM 195
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A ++ +++L G LIG G+N++K+ + +G I I +
Sbjct: 196 QKEADETKLAEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQ 247
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L S + +R + + G V A +A VEI +LRE ++++ P N SA
Sbjct: 248 DL----SIYNPERTITVKGAVEACASAEVEIMKKLREAFENDMLAVHQQANLIPGLNLSA 303
Query: 237 I 237
+
Sbjct: 304 L 304
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 349 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 408
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 409 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 456
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 457 VIGKGGKTVNELQNLTSAEVIV 478
>gi|149039794|gb|EDL93910.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Rattus
norvegicus]
Length = 386
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
>gi|148709317|gb|EDL41263.1| mCG6893, isoform CRA_b [Mus musculus]
gi|148709318|gb|EDL41264.1| mCG6893, isoform CRA_b [Mus musculus]
Length = 368
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 21/163 (12%)
Query: 66 GKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--- 122
GK+G ++K+REE+ A I I++ ER+I ++ N A+ + A+I
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKAFAMIIDK 70
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA + + A +
Sbjct: 71 LEEDISSSMTNSTAASKPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 128
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 129 MLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 166
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 90 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 141
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 259 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 314
>gi|147832545|emb|CAN68300.1| hypothetical protein VITISV_009906 [Vitis vinifera]
Length = 408
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ +Q GC+IG GQ I+ +R+ SGA I IL + LP C+ + S+ ++QIS +
Sbjct: 284 TVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSCSLS--SNELIQISREP 341
Query: 204 PAVLNALVEIGNQLRENPPRQ---VISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
V L +I ++L +NP R + + P YS+ + + TSG P++ L
Sbjct: 342 FIVRKILYQIASRLHDNPSRSQHLFVYVVPI-GYSS---SGSLMGLTSGAPIIGL 392
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E+ G D + +A V R++VPS QIG VIGK G IQ IR E+ A I+I ++
Sbjct: 271 EVHGEDSE---EANQVTVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILK-----DD 322
Query: 95 RVIIISSKDNDNVVSDAE-----NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+ S N+ + E L QIA+ L D+ S S+ H+ + I
Sbjct: 323 HLPSCSLSSNELIQISREPFIVRKILYQIASR-LHDNPSRSQ-------HLFVYVVP--I 372
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
S +G L+G+ +SGA I+ LAP
Sbjct: 373 GYSSSGSLMGL----------TSGAPIIGLAP 394
>gi|296420990|ref|XP_002840050.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636260|emb|CAZ84241.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
DG+ EG+ + + R IV S++ G +IGK G + +REET ++ +
Sbjct: 34 HDGDHEGARTEEEYAQSPLTLRAIVSSKEAGVIIGKAGKNVADLREETGVKAGVSKVVTG 93
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+RV+ ++ + A ++ +L S T+RLLI+
Sbjct: 94 IPDRVLTVTGP-----LDGVAKAYAMVSQTLLDSPPSTIGGGPPP----GPGTLRLLISH 144
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+Q G +IG G I+ +++ SG T + A LP ++RVV ++GD A+ A+
Sbjct: 145 NQMGTIIGRQGLKIKHIQDVSG-TRMTAAKEMLP-----QSTERVVDVAGDPEAIRTAIW 198
Query: 212 EIGNQLRENPPRQVISI 228
EIG L ++ R ++
Sbjct: 199 EIGKCLVDDWQRGTGTV 215
>gi|313228809|emb|CBY17960.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R ++PS+ G VIGK G I+ +R + + + D A+ ERV+ +D S
Sbjct: 134 VGHRFLIPSKMAGAVIGKGGTTIKSLRSDFACQLNVPD--AQGPERVLRFVCED-----S 186
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT---IRLLIAGSQAGCLIGMSGQNIE 166
+ ++++ L+ D V A++ +R+L+ S+AG +IG G+ I+
Sbjct: 187 NVSPLIEKVGNLLRND--------MVERNRAQADSDIDMRMLVHQSKAGAVIGFKGETIK 238
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
LR+ +G I + Q P + H SDR+++++G + EI L + PP+ +
Sbjct: 239 GLRDKTGCKINVY---QDP---APHSSDRLIKVAGQPDKIATCFGEILLILNDIPPKGFV 292
>gi|126314788|ref|XP_001377551.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2,
partial [Monodelphis domestica]
Length = 504
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+AK D RI+VP++ +G +IGKEG I+ + ++T++ + I + E+ V I +S
Sbjct: 89 QAKPPDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGASEKPVTIHAS 148
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A ++I ++ K+ D +V +++L S G LIG
Sbjct: 149 PEGSS------EACRRILEIMQKEADETKAVEEVP--------LKILAHNSLVGRLIGKE 194
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I L + + +R + + G + A +A VEI +LRE
Sbjct: 195 GRNLKKIEQDTGTKITISPLQDLTI----YNPERTITVKGTIEACSSAEVEIMRKLREAY 250
Query: 222 PRQVISIS------PAYNYSAI 237
+++++ P N SA+
Sbjct: 251 ENDMLTVNQQGSLIPGLNLSAL 272
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDN 106
Q+V++ + +P++ +G +IGK+GH I+++ +A+IKIA A ER++II+
Sbjct: 327 QEVVY-LFIPTQAVGAIIGKKGHHIKQLARFARASIKIAPAEGPDVGERMVIITGPPEAQ 385
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A +I + +++ N + H+ + S AG +IG G+ +
Sbjct: 386 F-----KAQGRIFGKLKEENFFNPKEEVKLKAHIR-------VPSSAAGRVIGKGGKTVN 433
Query: 167 KLRNSSGATIVI 178
+L+N + A +++
Sbjct: 434 ELQNLTSAEVIV 445
>gi|169844143|ref|XP_001828793.1| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
gi|116510164|gb|EAU93059.1| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
Length = 343
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 19/194 (9%)
Query: 39 SDPKRR----AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
S P+ R A + + R +V ++ G +IGK G + +RE+T ++ IA E
Sbjct: 13 SPPRSRSPTPAPNETLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIAGVHE 72
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV+ V+ + A+ + LI+ S++ A+ A+ +IRLLI+ +
Sbjct: 73 RVL---------TVTGSVEAVAKAYNLIISQLVSSNPAAPPASSSNVHTSIRLLISHNLM 123
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG +G I+ ++++SGA +V + LP ++RVV++ G A+ A+ EIG
Sbjct: 124 GTIIGRNGLKIKAIQDNSGARMVA-SKEMLP-----QSTERVVEVQGSPEAIGRAVEEIG 177
Query: 215 NQLRENPPRQVISI 228
L E+ R + ++
Sbjct: 178 KCLLEDWERGLGTV 191
>gi|325087770|gb|EGC41080.1| KH domain RNA-binding protein [Ajellomyces capsulatus H88]
Length = 321
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 GIEKAVWEIGKCLIDDWQR 204
>gi|291400301|ref|XP_002716510.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 2 [Oryctolagus cuniculus]
Length = 556
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A EI +LRE +++++ Y S++ P F
Sbjct: 337 AEAEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQF 372
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|355695692|gb|AES00095.1| insulin-like growth factor 2 mRNA binding protein 2 [Mustela
putorius furo]
Length = 194
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G + A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 15 REQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 72
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 73 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 118
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 119 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 174
Query: 209 ALVEIGNQLRE 219
A VEI +LRE
Sbjct: 175 AEVEIMKKLRE 185
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVC--------TVTADEK 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+LI S AG LIG +G I++LR
Sbjct: 103 TVLNILKDVLPRLEDNFSERDPCE--------VRMLIHQSHAGALIGRNGSKIKELREKC 154
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + P+
Sbjct: 155 SARLKIFTG-----CAPG-STDRVLITSGEQKNVLAIIEEVMRELKEIPIKGSATPYLPS 208
Query: 232 YNY 234
++Y
Sbjct: 209 FHY 211
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 103 TVLNILKDVLPRLEDN 118
>gi|119583082|gb|EAW62678.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
gi|119583085|gb|EAW62681.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
Length = 463
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 441
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 442 DQIQNAQYLLQNSVKQ 457
>gi|156358556|ref|XP_001624583.1| predicted protein [Nematostella vectensis]
gi|156211373|gb|EDO32483.1| predicted protein [Nematostella vectensis]
Length = 853
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISS 101
R K D R+++P + +G VIG G++I+KI E T +I I R E ++++ I
Sbjct: 70 RPMKEADYSIRMLIPCKMVGAVIGTSGNKIKKITEATNTSIDIHRKEDRREVDKLVTIRG 129
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
D NA QI L+ ++ D+N +++V +RL+I S AG +IG
Sbjct: 130 S-----PQDCSNANMQIHQLMREETDANLRSNEVE--------MRLVIHDSHAGRIIGRK 176
Query: 162 GQNIEKLRNSSGATIVILAPN---QLPLCASAHESDRVVQI 199
G N++ + + +GA+ + ++ N ++ + + DR+V I
Sbjct: 177 GNNLKSVMDETGASSIKVSGNTGDRMGHSSMLNPGDRIVSI 217
>gi|327263405|ref|XP_003216510.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Anolis
carolinensis]
Length = 425
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDTEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H SDRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSSDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI------RPAQPFVEPTSGQ 250
V+ + I + + E+P P Y+Y R +P P G+
Sbjct: 173 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGR 231
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 353 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 412
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 413 LQNSVKQYSGKFF 425
>gi|154275678|ref|XP_001538690.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415130|gb|EDN10492.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225556762|gb|EEH05050.1| KH domain RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 GIEKAVWEIGKCLIDDWQR 204
>gi|380812326|gb|AFE78037.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
Length = 459
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 386 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 445
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 446 LQNSVKQYA 454
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 384 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 436
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 437 DQIQNAQYLLQNSVKQ 452
>gi|119583083|gb|EAW62679.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_e [Homo
sapiens]
Length = 464
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 441
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 442 DQIQNAQYLLQNSVKQ 457
>gi|119583080|gb|EAW62676.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Homo
sapiens]
Length = 462
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 390 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 449
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 450 LQNSVKQYSGKFF 462
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 388 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 440
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 441 DQIQNAQYLLQNSVKQ 456
>gi|392873506|gb|AFM85585.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 424
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
S KR ED + E + + R Q V R+++ S+ G VIGK G I+ +R + A++ +
Sbjct: 24 SCKRPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSV 83
Query: 86 ADAIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
D+ ER++ I++ + +++S L++ KD D
Sbjct: 84 PDSSG--PERILSINADIETIGDILSKIVPTLEEYQHYKGKDFDCE-------------- 127
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+R+L+ SQAG +IG+ G I++LR S+ TI + H +DRVV + G
Sbjct: 128 -LRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQE------CCPHSTDRVVLLGGKP 180
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + I L E+P
Sbjct: 181 DRVVECIKIIMGLLSESP 198
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 350 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ--IQ 407
Query: 110 DAENALQQIAALIL 123
+A+ LQ +
Sbjct: 408 NAQYLLQNSCSSFF 421
>gi|355567865|gb|EHH24206.1| hypothetical protein EGK_07823 [Macaca mulatta]
Length = 464
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQPTITLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
V+ I G V+ + I + + E+P
Sbjct: 192 VILIGGKPDRVVECIKIILDLISESP 217
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + ++++I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGFKDQIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|59381084|gb|AAW84289.1| heterogeneous nuclear ribonucleoprotein K transcript variant [Homo
sapiens]
Length = 464
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISTDIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|432109005|gb|ELK33475.1| Heterogeneous nuclear ribonucleoprotein K [Myotis davidii]
Length = 438
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSDAENALQQIA 119
G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N +N+++Q A
Sbjct: 374 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 433
>gi|195154050|ref|XP_002017936.1| GL17034 [Drosophila persimilis]
gi|194113732|gb|EDW35775.1| GL17034 [Drosophila persimilis]
Length = 506
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D D KR + +D + RI++PS G VIGK G IQK+R T K+
Sbjct: 2 KREMNDAGDGPQDQKRNRRNEDTV-RILIPSSIAGAVIGKGGQHIQKMR-----TQKVEG 55
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+ + + K + +D E L+ I ++ ++ + + +RL
Sbjct: 56 KSKPNRDSI----PKATIQISADIEATLEIITEMLKYFEERDEDFD-----------VRL 100
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQAQVI 155
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 EAVREVITLTRDTPIKGAIHNYDPMNFDRV 185
>gi|71897277|ref|NP_001026556.1| heterogeneous nuclear ribonucleoprotein K [Gallus gallus]
gi|75571241|sp|Q5ZIQ3.1|HNRPK_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|53135051|emb|CAG32390.1| hypothetical protein RCJMB04_24e23 [Gallus gallus]
Length = 427
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADTETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 173 DRVVECIKIILDLISESP 190
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 414
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 415 LQNSVKQYSGKFF 427
>gi|334333295|ref|XP_003341704.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
Length = 470
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 398 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 457
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 458 LQNSVKQYSGKFF 470
>gi|402860705|ref|XP_003894763.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Papio anubis]
Length = 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 280 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|74144445|dbj|BAE36070.1| unnamed protein product [Mus musculus]
Length = 463
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|332215029|ref|XP_003256639.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Nomascus leucogenys]
Length = 536
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 308
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|74195705|dbj|BAE39657.1| unnamed protein product [Mus musculus]
Length = 463
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +I K G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIVKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|397470077|ref|XP_003806660.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Pan paniscus]
gi|179479906|gb|ACB86626.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 536
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 308
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|397470081|ref|XP_003806662.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Pan paniscus]
gi|179479866|gb|ACB86625.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 280 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|332215037|ref|XP_003256643.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 6 [Nomascus leucogenys]
Length = 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 280 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|402860703|ref|XP_003894762.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Papio anubis]
Length = 536
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 308
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|355559801|gb|EHH16529.1| hypothetical protein EGK_11818, partial [Macaca mulatta]
Length = 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 280 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ +A+ Q LK++ + +V + + S AG
Sbjct: 419 VIITGP------PEAQFKAQGRIFGKLKEEKFFTPKEEVKL------EAHIRVPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|354499998|ref|XP_003512090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Cricetulus griseus]
Length = 464
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|344282127|ref|XP_003412826.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Loxodonta africana]
Length = 599
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGG--ASQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAT 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 337 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|354500000|ref|XP_003512091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Cricetulus griseus]
Length = 463
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
gi|14165435|ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
gi|16923998|ref|NP_476482.1| heterogeneous nuclear ribonucleoprotein K [Rattus norvegicus]
gi|114625188|ref|XP_001155028.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 17
[Pan troglodytes]
gi|114625190|ref|XP_001155252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 21
[Pan troglodytes]
gi|126334813|ref|XP_001368466.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Monodelphis domestica]
gi|296189583|ref|XP_002742833.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Callithrix jacchus]
gi|332236649|ref|XP_003267512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Nomascus leucogenys]
gi|332236653|ref|XP_003267514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Nomascus leucogenys]
gi|338719650|ref|XP_003364038.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475601|ref|XP_003809222.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2 [Pan
paniscus]
gi|397475605|ref|XP_003809224.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4 [Pan
paniscus]
gi|402897757|ref|XP_003911911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Papio anubis]
gi|402897759|ref|XP_003911912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Papio anubis]
gi|403300940|ref|XP_003941170.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Saimiri boliviensis boliviensis]
gi|410978215|ref|XP_003995491.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Felis catus]
gi|410978217|ref|XP_003995492.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Felis catus]
gi|426362133|ref|XP_004048235.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Gorilla gorilla gorilla]
gi|426362135|ref|XP_004048236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Gorilla gorilla gorilla]
gi|48429097|sp|P61980.1|HNRPK_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=dC stretch-binding protein;
Short=CSBP
gi|48429103|sp|P61978.1|HNRPK_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=Transformation up-regulated
nuclear protein; Short=TUNP
gi|48429104|sp|P61979.1|HNRPK_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|241478|gb|AAB20770.1| heterogeneous nuclear ribonucleoprotein complex K [Homo sapiens]
gi|409389|dbj|BAA04566.1| dC-stretch binding protein [Rattus norvegicus]
gi|12847547|dbj|BAB27614.1| unnamed protein product [Mus musculus]
gi|15929044|gb|AAH14980.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|119583079|gb|EAW62675.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Homo
sapiens]
gi|148709316|gb|EDL41262.1| mCG6893, isoform CRA_a [Mus musculus]
gi|149039793|gb|EDL93909.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Rattus
norvegicus]
gi|380812324|gb|AFE78036.1| heterogeneous nuclear ribonucleoprotein K isoform b [Macaca
mulatta]
gi|410337441|gb|JAA37667.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401355|gb|JAA47567.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 463
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|332215027|ref|XP_003256638.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Nomascus leucogenys]
Length = 599
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|281337729|gb|EFB13313.1| hypothetical protein PANDA_003005 [Ailuropoda melanoleuca]
Length = 453
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 448
Query: 113 NALQ 116
LQ
Sbjct: 449 YLLQ 452
>gi|453088188|gb|EMF16228.1| KH domain RNA-binding protein [Mycosphaerella populorum SO2202]
Length = 369
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R IV S++ G +IGK G + +R++T ++ + +RV+ ++ +++
Sbjct: 43 LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT-----GILN 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEK 167
+A +A ++K VAA A NT IRLLI+ +Q G +IG G I++
Sbjct: 98 GIADAYGLVADCLVKGAPQMGIGGSVAA---APNTHPIRLLISHNQMGTIIGRQGLKIKQ 154
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
++++SG +V LP ++R+V++ G + A+ EIG L ++ R +
Sbjct: 155 IQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPDGIQKAVWEIGKCLVDDEQRGYGT 208
Query: 228 I--SPAYNYSAIRPAQPF 243
+ SP+ PA P
Sbjct: 209 VLYSPSVRVGGGAPAAPL 226
>gi|126330639|ref|XP_001363707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
gi|395515329|ref|XP_003761858.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Sarcophilus
harrisii]
Length = 471
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 398 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 457
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 458 LQNSVKQYA 466
>gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse
Length = 464
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|14165439|ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197101649|ref|NP_001126766.1| heterogeneous nuclear ribonucleoprotein K [Pongo abelii]
gi|388454448|ref|NP_001253875.1| heterogeneous nuclear ribonucleoprotein K [Macaca mulatta]
gi|114625208|ref|XP_001155079.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 18
[Pan troglodytes]
gi|114625210|ref|XP_001155315.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 22
[Pan troglodytes]
gi|149758457|ref|XP_001489114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Equus caballus]
gi|296189573|ref|XP_002742828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Callithrix jacchus]
gi|296189575|ref|XP_002742829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Callithrix jacchus]
gi|296189579|ref|XP_002742831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Callithrix jacchus]
gi|301758414|ref|XP_002915066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Ailuropoda melanoleuca]
gi|332236647|ref|XP_003267511.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Nomascus leucogenys]
gi|332236651|ref|XP_003267513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Nomascus leucogenys]
gi|344272026|ref|XP_003407837.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Loxodonta africana]
gi|395819298|ref|XP_003783031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Otolemur
garnettii]
gi|397475599|ref|XP_003809221.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1 [Pan
paniscus]
gi|397475603|ref|XP_003809223.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3 [Pan
paniscus]
gi|397475609|ref|XP_003809226.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6 [Pan
paniscus]
gi|402897753|ref|XP_003911909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Papio anubis]
gi|402897755|ref|XP_003911910.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Papio anubis]
gi|402897761|ref|XP_003911913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Papio anubis]
gi|403300938|ref|XP_003941169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Saimiri boliviensis boliviensis]
gi|403300942|ref|XP_003941171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Saimiri boliviensis boliviensis]
gi|403300944|ref|XP_003941172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Saimiri boliviensis boliviensis]
gi|410978211|ref|XP_003995489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Felis catus]
gi|410978213|ref|XP_003995490.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Felis catus]
gi|426362129|ref|XP_004048233.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Gorilla gorilla gorilla]
gi|426362131|ref|XP_004048234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Gorilla gorilla gorilla]
gi|75056718|sp|Q5R5H8.1|HNRPK_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|75075750|sp|Q4R4M6.1|HNRPK_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|12653175|gb|AAH00355.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|13879427|gb|AAH06694.1| Hnrpk protein [Mus musculus]
gi|26347481|dbj|BAC37389.1| unnamed protein product [Mus musculus]
gi|38197650|gb|AAH61867.1| Hnrpk protein [Rattus norvegicus]
gi|48145659|emb|CAG33052.1| HNRPK [Homo sapiens]
gi|55732576|emb|CAH92988.1| hypothetical protein [Pongo abelii]
gi|58475965|gb|AAH89328.1| Hnrpk protein [Mus musculus]
gi|61359196|gb|AAX41682.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|67971214|dbj|BAE01949.1| unnamed protein product [Macaca fascicularis]
gi|74139420|dbj|BAE40851.1| unnamed protein product [Mus musculus]
gi|74141211|dbj|BAE35915.1| unnamed protein product [Mus musculus]
gi|74178242|dbj|BAE29905.1| unnamed protein product [Mus musculus]
gi|74183280|dbj|BAE22563.1| unnamed protein product [Mus musculus]
gi|74185026|dbj|BAE39121.1| unnamed protein product [Mus musculus]
gi|119583081|gb|EAW62677.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_c [Homo
sapiens]
gi|123979648|gb|ABM81653.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|123994453|gb|ABM84828.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|158256108|dbj|BAF84025.1| unnamed protein product [Homo sapiens]
gi|197692227|dbj|BAG70077.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197692481|dbj|BAG70204.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|351696771|gb|EHA99689.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
gi|380812328|gb|AFE78038.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|380812330|gb|AFE78039.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|410337439|gb|JAA37666.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401379|gb|JAA47578.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 464
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|363744460|ref|XP_003643054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Gallus gallus]
Length = 426
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 32/238 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI-----RPAQPFVEPTSGQ 250
V+ + I + + E+P P Y+Y R +P P G+
Sbjct: 173 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMFDDRRGRPVGFPMRGR 230
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 354 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 413
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 414 LQNSVKQYSGKFF 426
>gi|61369343|gb|AAX43320.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
Length = 465
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|126723252|ref|NP_001075594.1| heterogeneous nuclear ribonucleoprotein K [Oryctolagus cuniculus]
gi|12230546|sp|O19049.1|HNRPK_RABIT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|2644968|emb|CAA05815.1| hnRNP-K protein [Oryctolagus cuniculus]
Length = 463
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 FKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|326500580|dbj|BAK06379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VS 109
+FR++V ++G +IG+ G I+++ E T+A +++ D R+++IS+ + ++
Sbjct: 95 VFRLVVAGDKVGGLIGRRGEVIKRLCEVTRARVRVLDPTDGVSSRIVLISATEETQAELA 154
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +A +I + + N + + +G + RLL+ +Q LIG G I+ ++
Sbjct: 155 PAMDAAVRIFKHVNDIEGINPDFTLPVSGPEICSA-RLLVPKAQGRHLIGKQGTTIQLMQ 213
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
S+G TI I+ ++ L ++ +R+V+I G VLNAL + LR
Sbjct: 214 ESTGTTIRIIDKDE--LLSNQMVEERIVEIRGASLKVLNALKSVLGLLR 260
>gi|345329393|ref|XP_001506808.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ornithorhynchus anatinus]
Length = 464
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|268567874|ref|XP_002640100.1| Hypothetical protein CBG12588 [Caenorhabditis briggsae]
Length = 398
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 34/217 (15%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVL---------FRIIVPSRQIGKVIGKEGHRIQKIREE 78
KR E+ E + S +R K R++V S+ G +IGK G I+++R E
Sbjct: 19 KREHENDEGDRSSRHKRQKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAE 78
Query: 79 TKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
A +++ D+ ERV V +D + L + ++ + +D+ SE
Sbjct: 79 FNAHVQVPDS--NTPERVC--------TVTADEKTVLNILKDVLPRLEDNFSERDPCE-- 126
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+R+LI S AG LIG +G I++LR A + I CA +DRV+
Sbjct: 127 ------VRVLIHQSHAGALIGRNGTKIKELREKCSARLKIFTG-----CAPG-STDRVLI 174
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNY 234
SG+ VL + E+ +L+E P + P+++Y
Sbjct: 175 TSGEQKNVLAIIEEVMKELKEIPIKGSATPYLPSFHY 211
>gi|449272169|gb|EMC82214.1| Heterogeneous nuclear ribonucleoprotein K [Columba livia]
Length = 422
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI------RPAQPFVEPTSGQ 250
V+ + I + + E+P P Y+Y R +P P G+
Sbjct: 173 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGR 231
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 64 VIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQ 116
+IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+ LQ
Sbjct: 366 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQYLLQ 416
>gi|332818640|ref|XP_001151234.2| PREDICTED: LOW QUALITY PROTEIN: insulin-like growth factor 2 mRNA
binding protein 2 isoform 7 [Pan troglodytes]
Length = 599
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 337 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|332215035|ref|XP_003256642.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 5 [Nomascus leucogenys]
Length = 577
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G + A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 178 REQGHAPGGTSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 235
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 236 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 281
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 282 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 337
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 338 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 372
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 410 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 464
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 465 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 517
Query: 173 GATIVI 178
A +++
Sbjct: 518 SAEVIV 523
>gi|45361501|ref|NP_989327.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
gi|39794355|gb|AAH64170.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + ILK E + G+
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHFKGNDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI 237
V+ + I + + E+P P Y+Y
Sbjct: 173 DRVVECIKVILDLISESPVKGRSQPYDPNFYDETYDYGGF 212
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+ + + +A+
Sbjct: 324 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQ--IQNAQ 381
Query: 113 NALQ 116
LQ
Sbjct: 382 FLLQ 385
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 322 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---DDRIITITGTQ 374
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 375 DQIQNAQFLLQNSVKQ 390
>gi|4191610|gb|AAD09827.1| IGF-II mRNA-binding protein 2 [Homo sapiens]
gi|18204201|gb|AAH21290.1| Insulin-like growth factor 2 mRNA binding protein 2 [Homo sapiens]
gi|123982692|gb|ABM83087.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
gi|157928388|gb|ABW03490.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
Length = 598
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 176 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 233
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 234 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 279
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 280 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 335
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 336 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 370
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 415 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 474
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 475 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 522
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 523 VIGKGGKTVNELQNLTSAEVIV 544
>gi|109042328|ref|XP_001095336.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 5 [Macaca mulatta]
gi|402860699|ref|XP_003894760.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Papio anubis]
Length = 599
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 337 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|308499839|ref|XP_003112105.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
gi|308268586|gb|EFP12539.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
Length = 721
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV +++ D V++
Sbjct: 375 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTA-DEKTVLNILR 431
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L + L+D+ S + +V R+LI S AG LIG +G I++LR
Sbjct: 432 DVLPR-----LEDNFSERDPCEV----------RMLIHQSHAGALIGRNGTKIKELREKC 476
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + P+
Sbjct: 477 SARLKIFTG-----CAPG-STDRVLITSGEQKNVLAIIEEVMKELKEIPIKGSSTPYLPS 530
Query: 232 YNY 234
++Y
Sbjct: 531 FHY 533
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 374 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 424
Query: 205 AVLNALVEIGNQLREN 220
VLN L ++ +L +N
Sbjct: 425 TVLNILRDVLPRLEDN 440
>gi|64085377|ref|NP_006539.3| insulin-like growth factor 2 mRNA-binding protein 2 isoform a [Homo
sapiens]
gi|224471831|sp|Q9Y6M1.2|IF2B2_HUMAN RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=Hepatocellular carcinoma autoantigen p62; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|119598617|gb|EAW78211.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Homo sapiens]
gi|158254760|dbj|BAF83353.1| unnamed protein product [Homo sapiens]
gi|410223074|gb|JAA08756.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251296|gb|JAA13615.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302886|gb|JAA30043.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342487|gb|JAA40190.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 599
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 337 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|402225510|gb|EJU05571.1| hypothetical protein DACRYDRAFT_20011 [Dacryopinax sp. DJM-731 SS1]
Length = 413
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
D + E D R Q++ R ++ ++ +IGK G + +IRE++ A I ++++I +
Sbjct: 105 DKDEENEDGTREPPPQNIHMRALIVTQDASIIIGKGGSHVNEIREKSGARITVSESIPGN 164
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
ER++ NV + + ++ + +D E V A TI+ +I S
Sbjct: 165 PERIL--------NVTGPLDAVAKAFGLIVRQINDEPFEQPSVPGSR--AVTIKFIIPNS 214
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ G LIG +G I++++ +SGA + + LP ++RV+ +SG A+ A
Sbjct: 215 RMGTLIGKAGSKIKEIQEASGAKLH-ASEGLLP-----GSTERVLNVSGVADAIHIATYY 268
Query: 213 IGNQLRENPP 222
+GN L + P
Sbjct: 269 VGNSLLNSHP 278
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 44/192 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIIISSKDNDNVV 108
V + I+P+ ++G +IGK G +I++I+E + A + ++ + ERV+ +S V
Sbjct: 205 VTIKFIIPNSRMGTLIGKAGSKIKEIQEASGAKLHASEGLLPGSTERVLNVSG------V 258
Query: 109 SDAEN-ALQQIAALILKDDDSNSEASK---------VAAGHVAANTI------------- 145
+DA + A + +L S S + + NT
Sbjct: 259 ADAIHIATYYVGNSLLNSHPSYSSTHASYKQQRRPMASTTYYPPNTPVSNYGYPGPAAAP 318
Query: 146 ---------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA-----H 191
I G +IG G I ++R+ SG I IL P Q P S
Sbjct: 319 APVSLQQTQNFYIPNDLVGSIIGKGGAKINEIRHVSGCQIKILEPGQGPAPGSGAVQPMS 378
Query: 192 ESDRVVQISGDV 203
E++R+V I+G +
Sbjct: 379 ETERMVTITGGI 390
>gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens]
Length = 464
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQDFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|409083451|gb|EKM83808.1| hypothetical protein AGABI1DRAFT_117279 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 340
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
QD L R +V ++ G +IGK G + +RE+T ++ I ERV+
Sbjct: 22 QDSLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVL--------- 72
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNI 165
VS + +A+ + LI+ + S AS V + +T IRLLI+ + G +IG +G I
Sbjct: 73 TVSGSVDAVAKAYTLIITQLVTASPASPVVSSPSTVHTSIRLLISHNLMGTIIGRNGLKI 132
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++++SGA +V + LP ++R+V++ G A+ A+ EIG L E+ R
Sbjct: 133 KAIQDNSGARMV-ASKEMLP-----QSTERIVEVQGAPEAIGRAVEEIGKCLLEDWER 184
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ LR +G A + + P HE RV+ +SG
Sbjct: 26 TLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPG-------VHE--RVLTVSG 76
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
V AV A I QL P + SP+ +++IR
Sbjct: 77 SVDAVAKAYTLIITQLVTASPASPVVSSPSTVHTSIR 113
>gi|431838851|gb|ELK00780.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Pteropus
alecto]
Length = 820
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G + A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 398 REQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 455
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 456 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 501
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 502 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 557
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 558 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 592
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 640 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 699
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 700 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 747
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 748 KGGKTVNELQNLTSAEVIV 766
>gi|67536752|ref|XP_662150.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|40741699|gb|EAA60889.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|259482624|tpe|CBF77283.1| TPA: KH domain RNA-binding protein (AFU_orthologue; AFUA_2G02780)
[Aspergillus nidulans FGSC A4]
Length = 542
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 208 DEGDLEVAPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 267
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ +S A +A +L+ A ++ G + +N IR
Sbjct: 268 GVHDRVLTVT-----GALSGTARAYALVAKGLLEG------APQMGMGGIVSNNGTHPIR 316
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 317 LLISHNQMGTIIGRQGLKIKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGI 370
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 371 EKAIWEIGKCLIDDWQRGTGTI--LYN 395
>gi|261197389|ref|XP_002625097.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239595727|gb|EEQ78308.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239606718|gb|EEQ83705.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327358051|gb|EGE86908.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 363
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R + GE +G AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RNDQGEADGPPKTEEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G V +NT
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVVSNTGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 GIEKAVWEIGKCLIDDWQR 204
>gi|426217762|ref|XP_004003121.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Ovis aries]
Length = 556
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQPF 243
A +EI +LRE +++ + Y S++ P F
Sbjct: 337 AEIEIMKKLREAFENDMLAANTHSGYFSSLCPPHQF 372
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|387018122|gb|AFJ51179.1| Heterogeneous nuclear ribonucleoprotein K-like [Crotalus
adamanteus]
Length = 426
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDIEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + ILK E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H SDRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSSDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI------RPAQPFVEPTSGQ 250
V+ + I + + E+P P Y+Y R +P P G+
Sbjct: 173 DRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGR 231
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 353 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 412
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 413 LQNSVKQYA 421
>gi|326530414|dbj|BAJ97633.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISSKD 103
++ RI+ S IG VIG+ G ++++ ++T A I + DA ER+I+ISSK+
Sbjct: 65 EEFSIRILCASELIGPVIGRSGANVRQVEQQTGARIVVQELHKDASG---ERLIVISSKE 121
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT------IRLLIAGSQAGCL 157
A+ I ALIL S ASKV+ + + RL++ + GC+
Sbjct: 122 -----IPADPVSPTIEALILL--HSKVSASKVSEPSESEPSGEHKLVTRLVVPSKKVGCI 174
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+G G+ I ++R GA I + + P S +E +VQ+SG AL EI ++L
Sbjct: 175 LGEGGKVITEMRRRIGAEIRVYSKADKPKYLSFNEE--LVQVSGSPDIAREALTEIASRL 232
Query: 218 RE 219
R+
Sbjct: 233 RD 234
>gi|355733298|gb|AES10985.1| poly binding protein 2 [Mustela putorius furo]
Length = 148
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 15/128 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------P 76
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 77 TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 169 RNSSGATI 176
R S+GA +
Sbjct: 136 RESTGAQV 143
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 77
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 78 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 108
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
V R++VP+ Q G +IGK G +I++IRE T A +++A
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 146
>gi|119585581|gb|EAW65177.1| poly(rC) binding protein 4, isoform CRA_f [Homo sapiens]
Length = 244
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 19/164 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
++GA + + A + LP + ++R V +SG A++ + +I
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQI 166
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILK 124
++QI A+IL+
Sbjct: 162 -----CVRQICAVILE 172
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + P +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP--------ERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRP 100
>gi|295660901|ref|XP_002791006.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280933|gb|EEH36499.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 EGIEKAVWEIGKCLIDDWQR 205
>gi|226289821|gb|EEH45305.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 EGIEKAVWEIGKCLIDDWQR 205
>gi|390474894|ref|XP_002758191.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Callithrix jacchus]
Length = 1052
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 630 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 687
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 688 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 733
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A
Sbjct: 734 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAC 789
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 790 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 824
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 869 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 928
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 929 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 976
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 977 VIGKGGKTVNELQNLTSAEVIV 998
>gi|119583084|gb|EAW62680.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_f [Homo
sapiens]
Length = 440
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 427 LQNSVKQYA 435
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|348519761|ref|XP_003447398.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 3 [Oreochromis niloticus]
Length = 588
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDLTI----YNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSGQPLLQ 254
+ +I+ P N +A+ R A P V P P LQ
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAPAGYNPFLQ 409
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 409 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 467
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 468 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 515
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPAVLNA---LVEIGNQL 217
G+ + +L+N + A +++ P + E+D V V+ISG A A + EI Q+
Sbjct: 516 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFASQTAQRKIREIIQQV 569
Query: 218 R--ENPPRQVISISPAYN 233
+ E +Q ++SP ++
Sbjct: 570 KQQEQKHQQGAAVSPHHS 587
>gi|225682425|gb|EEH20709.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 364
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ A+ EIG L ++ R
Sbjct: 186 EGIEKAVWEIGKCLIDDWQR 205
>gi|426201505|gb|EKV51428.1| hypothetical protein AGABI2DRAFT_182391 [Agaricus bisporus var.
bisporus H97]
Length = 340
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
QD L R +V ++ G +IGK G + +RE+T ++ I ERV+
Sbjct: 22 QDSLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVL--------- 72
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNI 165
VS + +A+ + LI+ + S AS V + +T IRLLI+ + G +IG +G I
Sbjct: 73 TVSGSVDAVAKAYTLIITQLVTASPASPVVSSPSTIHTSIRLLISHNLMGTIIGRNGLKI 132
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++++SGA +V + LP ++R+V++ G A+ A+ EIG L E+ R
Sbjct: 133 KAIQDNSGARMV-ASKEMLP-----QSTERIVEVQGAPEAIGRAVEEIGKCLLEDWER 184
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ LR +G A + + P HE RV+ +SG
Sbjct: 26 TLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPG-------VHE--RVLTVSG 76
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
V AV A I QL P + SP+ +++IR
Sbjct: 77 SVDAVAKAYTLIITQLVTASPASPVVSSPSTIHTSIR 113
>gi|363744462|ref|XP_425032.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Gallus gallus]
Length = 430
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 32/235 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + + +I E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP------PRQVISISPAYNYSAI-----RPAQPFVEPTSGQ 250
+ + I + + E+P P Y+Y R +P P G+
Sbjct: 179 VECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMFDDRRGRPVGFPMRGR 233
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 416
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 417 LQNSVKQYA 425
>gi|404351641|ref|NP_998156.3| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 431
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYSGTDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGG 174
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 418
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 419 LQNSVKQYSGRFF 431
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 357 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 409
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ NA + N +++ R
Sbjct: 410 DQIQNAQYLLQNSVKQYSGR 429
>gi|392353290|ref|XP_003751453.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++L+ ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELQENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + L E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLLSESP 217
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IK + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKTDEPLEGSEDRIITITGTQDQIQNTQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK G I+ IR+++ A I I+D ER++ I+ A I
Sbjct: 11 KEVGSIIGKRGDHIKLIRDQSGAKINISDGSC--PERIVTITGS-----TGTINKAFIMI 63
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
A + D + + + + T+RL++ +Q GC+IG G I+++R ++GA+I +
Sbjct: 64 CAKL--QQDLQALPNSIPKPPI---TMRLIVPATQCGCIIGKGGSKIKEIREATGASIQV 118
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
A LP ++R V ISG ++++ + I L E P +
Sbjct: 119 -ASEMLP-----SSTERAVTISGSADSIVDCMRNICQILLEAPAK 157
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS D++V
Sbjct: 83 ITMRLIVPATQCGCIIGKGGSKIKEIREATGASIQVASEMLPSSTERAVTISG-SADSIV 141
Query: 109 SDAENALQ 116
N Q
Sbjct: 142 DCMRNICQ 149
>gi|426217760|ref|XP_004003120.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Ovis aries]
Length = 599
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 24/208 (11%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G V A +A +EI +LRE
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLRE 347
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|291400299|ref|XP_002716509.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 1 [Oryctolagus cuniculus]
Length = 599
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A EI +LRE +++++ P N SA+
Sbjct: 337 AEAEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 371
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|363749247|ref|XP_003644841.1| hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888474|gb|AET38024.1| Hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
Length = 398
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R++ + V+G +G RI +I+E+TK I ++D I ERV+ +
Sbjct: 48 VHMRMLCLVKHASMVVGAKGERISRIKEDTKTRINVSDNIKNVPERVVYLRGS-----CE 102
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
D A +I+ I +DD S + T+ LLI G +IG G + ++
Sbjct: 103 DVAKAFGKISRAINDEDDRESNERSLPL------TVNLLIPHHLMGYVIGKQGSRLREIE 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ S A +V P QLP+ +DRV+ I+G A+ A +G + P+
Sbjct: 157 DLSAARLV-AGPQQLPM-----SNDRVLCITGVADAIHIATYYVGQTILTCEPK 204
>gi|79550843|ref|NP_178410.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|45752620|gb|AAS76208.1| At2g03110 [Arabidopsis thaliana]
gi|46359791|gb|AAS88759.1| At2g03110 [Arabidopsis thaliana]
gi|330250570|gb|AEC05664.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 153
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 83 IKIADAIARHEERVIIISSK---------DNDNVVSDAENALQQIAALILKDDDSNSEAS 133
+++ +A+ +ERV+ I S DN++ V A +AL ++ +++ ++ + +
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 134 KV----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ G T+R+L+ Q G LIG G I+ LRN + A I + N LP+CA
Sbjct: 61 NDNDEYSEGQTVV-TVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDN-LPMCAL 118
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
A D ++QI GD AV AL ++ L NP R
Sbjct: 119 ALSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD------AIA-RHEERVIIISSK 102
V R++VPS QIG +IGK G IQ +R +T A I++ + A+A H+E + II
Sbjct: 73 VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSHDELLQIIGDP 132
Query: 103 DNDNVVSDAENALQQIAALILKD 125
S AL Q+A L+ +
Sbjct: 133 ------SAVREALYQVAFLLYNN 149
>gi|332236655|ref|XP_003267515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Nomascus leucogenys]
gi|332832094|ref|XP_001154460.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 8 [Pan
troglodytes]
gi|338719652|ref|XP_003364039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475607|ref|XP_003809225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5 [Pan
paniscus]
gi|402897763|ref|XP_003911914.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Papio anubis]
gi|410978219|ref|XP_003995493.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Felis catus]
gi|426362137|ref|XP_004048237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Gorilla gorilla gorilla]
gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus]
gi|26353476|dbj|BAC40368.1| unnamed protein product [Mus musculus]
gi|194374597|dbj|BAG62413.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 427 LQNSVKQYSGKFF 439
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|354500004|ref|XP_003512093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 4
[Cricetulus griseus]
Length = 439
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 427 LQNSVKQYSGKFF 439
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|241956728|ref|XP_002421084.1| RNA-binding protein, putative [Candida dubliniensis CD36]
gi|223644427|emb|CAX41241.1| RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 377
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 83 YRVLVSAKEAGCLIGTNGQVIDSIRNETSTKAGISRLIPGSHERILTVSGK-----LDDC 137
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + N + NT +RLLI SQ G LIG G I+
Sbjct: 138 AKALSYFAQALINGNIENYNYFPLKQLSSTPNTNDTTILRLLIPNSQMGTLIGFKGIRIQ 197
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
+L+N+ ++ I + + LP ++R+V++ G V + ++L
Sbjct: 198 QLQNNYNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL 235
>gi|62088704|dbj|BAD92799.1| heterogeneous nuclear ribonucleoprotein K isoform a variant [Homo
sapiens]
Length = 442
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 22 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 81
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS+ ++ I ILK E + G +R
Sbjct: 82 DSSG--PERILSISAD------------IETIGE-ILKKIIPTLEEYQHYKGSDFDCELR 126
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 127 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 180
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 181 VECIKIILDLISESP 195
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 369 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 428
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 429 LQNSVKQYA 437
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 367 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 419
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 420 DQIQNAQYLLQNSVKQ 435
>gi|390355846|ref|XP_003728637.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Strongylocentrotus purpuratus]
Length = 345
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
DV FR++V S + G +I K G I+++R + AT+ I D+ I+ +SK+N
Sbjct: 8 DVTFRLLVSSNKAGGLIAKGGQNIKRLRSDYNATVSIPDSSGPDRVLQIVANSKEN---- 63
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHV--AANTIRLLIAGSQAGCLIGMSGQNIE 166
+ ++++ LI E S + G T+ +L+ SQ G +IG +G I+
Sbjct: 64 --GLDIIEELIPLI------REEVSPFSDGEADPCTTTLSVLVQTSQVGAIIGRAGIKIK 115
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+LR S+ + + LP C+ ++ +VQI+G AVL A+ EI E P
Sbjct: 116 ELRESTKTKVKVFQ-ECLP-CS----TESLVQINGTPDAVLLAIGEIYVTCSEAP 164
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
++ +P+ +G VIG+ G RI+ IR ++A I+IA+ + E+RVI I + +S A
Sbjct: 272 LQVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITI--RGTQEQISHA 329
Query: 112 ENALQ 116
+ LQ
Sbjct: 330 QFLLQ 334
>gi|354542956|emb|CCE39674.1| hypothetical protein CPAR2_600900 [Candida parapsilosis]
Length = 375
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IREET I+ IA ER++ +S K + D
Sbjct: 111 YRVLVSAKEAGCLIGQNGKVIDSIREETNTKAGISRLIAGTHERILTVSGK-----LDDC 165
Query: 112 ENALQQIAALILKDDDSN------SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
AL A +L + S +RLLI SQ G LIG G I
Sbjct: 166 AKALSYFAQALLGSSIETYNYFPLKQLSSTPCVEHETTILRLLIPNSQMGTLIGAKGARI 225
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++++ G ++ I + + LP ++R+V++ G V + +AL I L E+ V
Sbjct: 226 QQIQHNFGISM-IASKSFLP-----GSNERLVELQGTVDDLYDALRIISRCLIEDFSSSV 279
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADAIARHEERVIIISSKDNDN 106
+ + R+++P+ Q+G +IG +G RIQ+I+ + I + ER++ +
Sbjct: 201 ETTILRLLIPNSQMGTLIGAKGARIQQIQHNFGISMIASKSFLPGSNERLVEL-----QG 255
Query: 107 VVSDAENALQQIAALILKDDDSN--SEASKVAAGHVAA--NTIRLLIAGSQAGCLIGMSG 162
V D +AL+ I+ +++D S+ + V H + +T + G LIG +G
Sbjct: 256 TVDDLYDALRIISRCLIEDFSSSVGTTTYYVPKSHQSTRKSTATISFPNDMVGALIGKNG 315
Query: 163 QNIEKLRNSSGATIVI 178
I+ +R SGA I I
Sbjct: 316 SRIQGVRKVSGAMIGI 331
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
PK + I P+ +G +IGK G RIQ +R+ + A I I +A+ +ERV I+
Sbjct: 287 PKSHQSTRKSTATISFPNDMVGALIGKNGSRIQGVRKVSGAMIGIGEAVEGSDERVFTIT 346
>gi|354500002|ref|XP_003512092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Cricetulus griseus]
Length = 440
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 427 LQNSVKQYA 435
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|218184511|gb|EEC66938.1| hypothetical protein OsI_33565 [Oryza sativa Indica Group]
Length = 800
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P+ ++G VIG G R++++ EETKA ++ I A E VII + + D
Sbjct: 241 VFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKP 300
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ + DD + + + R+L QA LIG G I ++
Sbjct: 301 PAIDALLRVYECTINDDGLDVRYNNIVVA-------RILTPSEQAASLIGDQGSVINYIK 353
Query: 170 NSSGATIVIL 179
+S I ++
Sbjct: 354 KASKTNIHVI 363
>gi|168277712|dbj|BAG10834.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|184186906|gb|ACC69193.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
Length = 440
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 427 LQNSVKQYA 435
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|66910286|gb|AAH96867.1| Heterogeneous nuclear ribonucleoprotein K, like [Danio rerio]
gi|182889168|gb|AAI64732.1| Hnrpkl protein [Danio rerio]
Length = 431
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYSGTDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGG 174
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 418
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 419 LQNSVKQYSGRFF 431
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 357 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 409
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ NA + N +++ R
Sbjct: 410 DQIQNAQYLLQNSVKQYSGR 429
>gi|444513545|gb|ELV10391.1| Poly(rC)-binding protein 4 [Tupaia chinensis]
Length = 399
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ +V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGSNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E S
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEG-------FS 175
Query: 230 PAYNYSAIRPAQ 241
Y A+ PA+
Sbjct: 176 VQGQYGAVTPAE 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVA----------AGHVA----------------A 142
++QI A+IL+ + V +GH
Sbjct: 162 -----CVRQICAVILEGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQT 216
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
++ L+ GC+IG G I ++R SGA I I
Sbjct: 217 SSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 252
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 207 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 262
Query: 96 VIIIS 100
+ I+
Sbjct: 263 HVTIT 267
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA + RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGSNVSRP 100
>gi|388582172|gb|EIM22478.1| eukaryotic type KH-domain (KH-domain type I) [Wallemia sebi CBS
633.66]
Length = 319
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 25/202 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V +++ G +IGK G + +RE T ++ IA ERV+ I+ S
Sbjct: 21 LTLRALVSTKEAGIIIGKGGKNVADLRERTGVKAGVSKVIAGVHERVLSITGS-----TS 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+A IA IL D+ N + + + A IRLLI+ + G +IG G I++++
Sbjct: 76 AIADAFSIIAQTIL-DNPLNPSTAPLQSPPSATTAIRLLISHNLMGTVIGRQGIKIKQIQ 134
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--------- 220
++SG +V + LP ++R+V++ G V ++ A+ +I L E+
Sbjct: 135 DTSGVRMV-ASKELLP-----QSTERIVEVQGTVESIHIAINDIAKCLLEDWDRYSGTIL 188
Query: 221 ----PPRQVISISPAYNYSAIR 238
PP + + ++N S+IR
Sbjct: 189 YTPAPPNEHSLFNSSFNNSSIR 210
>gi|348519763|ref|XP_003447399.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 4 [Oreochromis niloticus]
Length = 584
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDLTI----YNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSGQP 251
+ +I+ P N +A+ P + P +G P
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPP 393
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
+ A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 405 QSAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 463
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 464 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 511
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPAVLNA---LVEIGNQL 217
G+ + +L+N + A +++ P + E+D V V+ISG A A + EI Q+
Sbjct: 512 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFASQTAQRKIREIIQQV 565
Query: 218 R--ENPPRQVISISPAYN 233
+ E +Q ++SP ++
Sbjct: 566 KQQEQKHQQGAAVSPHHS 583
>gi|354484184|ref|XP_003504270.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Cricetulus griseus]
gi|344239809|gb|EGV95912.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Cricetulus
griseus]
Length = 530
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 29/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G S R+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHSGSSSQTRQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 165
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ + A +V +++L
Sbjct: 166 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEAEDTKLAEEVP--------LKIL 211
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G + A N
Sbjct: 212 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTIDACAN 267
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 268 AEMEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 302
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 363 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 417
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 418 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 470
Query: 173 GATIVI 178
A +++
Sbjct: 471 SAEVIV 476
>gi|124359391|gb|ABN05855.1| KH, type 1 [Medicago truncatula]
Length = 222
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------- 99
A V FR++ S +IG VIGK G I+ ++ T A I+I D+ +RVI++
Sbjct: 45 AGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNID 104
Query: 100 -------SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
S D + + VS A+ AL ++ IL + +E + G + RL+
Sbjct: 105 GKVMVRSHSGDGEAIEVSKAQEALLRVFDRIL---EVAAEMEGIELGDRTV-SCRLVADS 160
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+QAG +IG G+ +EK++ +G I + N LP C S+ D V++ S
Sbjct: 161 AQAGSVIGKGGKVVEKIKKDTGCKIWVCKDN-LPACISS--PDEVIECS 206
>gi|449266969|gb|EMC77947.1| Insulin-like growth factor 2 mRNA-binding protein 2, partial
[Columba livia]
Length = 522
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 31/242 (12%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIG 62
+I+ P V + P P R G RE G G S PK+ + R++VP++ +G
Sbjct: 72 KISYIPDEEVSSSPPPQRSRRGGHSSRERGSSPGGSSQPKQL----EFPLRMLVPTQFVG 127
Query: 63 KVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121
+IGKEG I+ + ++T++ + I A E+ I I + A + I +
Sbjct: 128 AIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPE-----GCSEACRMILDI 182
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 183 MQKEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL 234
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYS 235
L + + +R + + G A A VEI +LRE V++++ P N +
Sbjct: 235 QDLTI----YNPERTITVKGSTEACSKAQVEIMKKLREAYENDVVAVNQQANLIPGLNLN 290
Query: 236 AI 237
A+
Sbjct: 291 AL 292
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 353 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERMVIITGPPEAQF----- 407
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + AG +IG G+ + +L+N +
Sbjct: 408 KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGRVIGKGGKTVNELQNLT 460
Query: 173 GATIVI 178
A +++
Sbjct: 461 SAEVIV 466
>gi|193848519|gb|ACF22709.1| hypothetical protein-2 [Brachypodium distachyon]
Length = 429
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + FR++ G +IGK+G I+ ET A+I + + + ERVI IS+ ++
Sbjct: 279 QQISFRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESPGK 338
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S ++A IL D E + + R+L+ SQ L+G+ G I++
Sbjct: 339 HSKVQSA-------ILCIFDRMEEVERNLMFGKPECSARVLVPKSQFSSLVGLGGAIIKE 391
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+ S+GA I IL +P CAS +RV+Q S
Sbjct: 392 MVKSTGARIEILDEMDVPACAS--NCERVLQAS 422
>gi|299029|gb|AAB26047.1| pre-mRNA binding K protein, hnRNP K [Xenopus laevis, Peptide, 396
aa]
Length = 396
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 35/204 (17%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEDEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI------LKDDDSNSEASKVAA 137
+ D+ ER++ IS +D E + + +I K +D + E
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKIIPTLEEHFKGNDFDCE------ 117
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV
Sbjct: 118 -------LRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVV 164
Query: 198 QISGDVPAVLNALVEIGNQLRENP 221
I G V+ + I + + E+P
Sbjct: 165 LIGGRPDRVVECIKVILDLISESP 188
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+
Sbjct: 321 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITIT 368
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 319 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---DDRIITITGTQ 371
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 372 DQIQNARFLLQNSVKQ 387
>gi|302839775|ref|XP_002951444.1| hypothetical protein VOLCADRAFT_105091 [Volvox carteri f.
nagariensis]
gi|300263419|gb|EFJ47620.1| hypothetical protein VOLCADRAFT_105091 [Volvox carteri f.
nagariensis]
Length = 1261
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 28 KRRREDGEIEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR+ +D + + +RR++ + + FR++ Q G VIGK G ++ IR+ + A +
Sbjct: 37 KRKPQDKDNKEKAKRRRSEKPAVPKGIHFRLLCHEGQAGAVIGKGGDTVRNIRKNSGAEV 96
Query: 84 KIADAIARHEERVIIISSKDNDNVVSD--AENALQQIAALILKDDD--SNSEASKVAAGH 139
+ I H RVIII S + V A+ AL A L ++ D + + SK+
Sbjct: 97 SVQPPIQGHRLRVIIIDSSPGNRAVPSYPAKEALLTCAMLTVEGDQPLNAPDPSKLV--- 153
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQN----IEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+RLL+ + A L+G+ + + GA ++I + P A A E
Sbjct: 154 ----DVRLLVHSALAAGLLGLKHSHGSLAAGDISARCGANVIIPGEAERPKLAEADE--E 207
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSG 249
+ + G PAV AL + +++R RQ + P VEPT G
Sbjct: 208 YLLLRGPWPAVYAALGMVADEVR----RQFFELR-----------DPHVEPTLG 246
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 35 EIEGSDPKRRAKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADA 88
I G P+ R+ A+ V ++++VP + G+ IGK G ++ +R +T+K+ A
Sbjct: 325 HIAGLVPEFRSSAEASTPIAVTYKLVVPESKAGRFIGKGGENLRDMRLALGLSTLKVHPA 384
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ RV+ +SS + A N AL+ + + A G+ TI++L
Sbjct: 385 VKDTSVRVLEVSSTE-----PAASNRCAAADALLYYVERLGQNTPQGAGGNRGRITIKML 439
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ G ++G I ++ + A+ V+ +P + D+ ++ GD V
Sbjct: 440 LQQQHCGPVVGPRAAVIRQISALTKASCVVHKKGDVPPYGA--PDDQELEAEGDAQHVFE 497
Query: 209 AL 210
A+
Sbjct: 498 AI 499
>gi|334343559|ref|XP_003341817.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Monodelphis
domestica]
Length = 367
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNS--SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
SQ G LIG +G I+++R S GATI L L +++ + G V
Sbjct: 110 ASQCGSLIGKAGTKIKEIRESPPKGATIPYHP--SLSLGTVLLSANQGFSVQGQYGTVTP 167
Query: 209 ALVEIGNQLRENP-PRQVISISPAYNYSAIRPAQPFVEP 246
A V QL +P P S+ P + SA +Q F+ P
Sbjct: 168 AEVSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQEFLVP 206
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETK--ATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSANQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLI 158
V+ AE + LQQ++ + S V +A T L+ GC+I
Sbjct: 159 QGQYGTVTPAEVSKLQQLSG----HPVPFASPSVVPGLDPSAQTSSQEFLVPNDLIGCVI 214
Query: 159 GMSGQNIEKLRNSSGATIVI 178
G G I ++R SGA I I
Sbjct: 215 GRQGSKISEIRQMSGAHIKI 234
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPSAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGSGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
>gi|348517286|ref|XP_003446165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 435
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED + + S + R + V RI++ S+ G VIGK G I+ +R + KA++
Sbjct: 17 ETNGKRPAEDADEQKSFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS+ ++ + E L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSISA----DIETVGEILLKIIPTL---------EEYQQYNGMDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQ----ECCPQS--TDRVVLVGGKT 175
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + + + E P
Sbjct: 176 ERVVECIKTMLELISEAP 193
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + N
Sbjct: 360 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNA 419
Query: 108 VSDAENALQQIAALIL 123
+N+++Q + +L
Sbjct: 420 QYLLQNSVKQYSGHLL 435
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+S+S S + G + N T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 336 DNSSSWDSYQSGGRGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 395
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
PL S DR++ ISG + NA + N +++
Sbjct: 396 ----DEPLEGS---EDRIITISGTQDQIQNAQYLLQNSVKQ 429
>gi|390604812|gb|EIN14203.1| hypothetical protein PUNSTDRAFT_95868 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 330
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 92/179 (51%), Gaps = 15/179 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +R++T ++ + +RV+ IS
Sbjct: 28 LTLRALVSTKDAGVIIGKGGKNVADLRDQTGVKAGVSKVVPGVHDRVLTISG-------- 79
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + + + LI+ +++ S ++A ++RLLI+ + G +IG G I+ ++
Sbjct: 80 -SVDRVAKAYGLIVAQLVASNPTSPISASSSTHTSLRLLISHNLMGTIIGRGGTRIKAIQ 138
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
++SGA +V + + LP ++RVV++ G V A+ A+ +IG L E+ R + ++
Sbjct: 139 DNSGARMV-ASKDMLP-----QSTERVVEVHGSVEAIERAVDDIGKSLLEDWERGLGTV 191
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG G+N+ LR+ +G A + + P H DRV+ ISG
Sbjct: 29 TLRALVSTKDAGVIIGKGGKNVADLRDQTGVKAGVSKVVPG-------VH--DRVLTISG 79
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYS 235
V V A I QL + P IS S + + S
Sbjct: 80 SVDRVAKAYGLIVAQLVASNPTSPISASSSTHTS 113
>gi|392347947|ref|XP_003749978.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V I++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+ +I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDWIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|410925644|ref|XP_003976290.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Takifugu rubripes]
Length = 430
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +++ ++ I ++LK + E +G +
Sbjct: 78 SVPDSSG--PERILSVNA------------SIDTIGKILLKIIPTLEEYQHY-SGIDFDS 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + I + E P
Sbjct: 177 ERVIECIKVILELVSETP 194
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E A+IKI + + E+R+I I+ + N
Sbjct: 358 QVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 417
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 418 LQNSVRQYSGRFF 430
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ GA+I I PL S DR++ I+G
Sbjct: 356 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI----DEPLEGS---EDRIITITGTQ 408
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ NA + N +R+ R
Sbjct: 409 DQIQNAQYLLQNSVRQYSGR 428
>gi|281341187|gb|EFB16771.1| hypothetical protein PANDA_007698 [Ailuropoda melanoleuca]
Length = 323
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 67 KEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126
++G ++K+REE+ A I I++ ER++ I+ +DA + A ++D
Sbjct: 4 QKGETVKKMREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEED 55
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
NS ++ A T+RL++ SQ G LIG G I+++R S+GA + + A + LP
Sbjct: 56 IINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP- 112
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++R V ISG A++ + +I + E+PP+
Sbjct: 113 ----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 145
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 71 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 129
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 130 ----QCVKQICVVMLES 142
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 261 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 307
>gi|410925642|ref|XP_003976289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Takifugu rubripes]
Length = 430
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +++ ++ I ++LK + E +G +
Sbjct: 78 SVPDSSG--PERILSVNA------------SIDTIGKILLKIIPTLEEYQHY-SGIDFDS 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + I + E P
Sbjct: 177 ERVIECIKVILELVSETP 194
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 22 RHD-VSGKRRREDGEIEGSDPKRRAKAQDV-----LFRIIVPSRQIGKVIGKEGHRIQKI 75
R+D +SG R + E R D+ ++ +P G +IGK G RI++I
Sbjct: 321 RYDSMSGSRYDNNSSWERFQSGSRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQI 380
Query: 76 REETKATIKIADAIARHEERVIIISSKDN--DNVVSDAENALQQIAALIL 123
R E A+IKI + + E+R+I I+ + N +N+++Q +
Sbjct: 381 RHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVRQYSGRFF 430
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 127 DSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+NS + +G + T ++ I AG +IG GQ I+++R+ GA+I I
Sbjct: 331 DNNSSWERFQSGSRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI 390
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
PL S DR++ I+G + NA + N +R+ R
Sbjct: 391 ----DEPLEGS---EDRIITITGTQDQIQNAQYLLQNSVRQYSGR 428
>gi|147903924|ref|NP_001080563.1| heterogeneous nuclear ribonucleoprotein K [Xenopus laevis]
gi|27882469|gb|AAH44711.1| Hnrpk protein [Xenopus laevis]
Length = 399
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 EANGKRPAEDMEEEQAFKRSRNTDLMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S +D E + ILK E + G+
Sbjct: 74 SVPDSSG--PERILSMS--------ADIETIGE-----ILKKIIPTLEEYQHFKGNDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI 237
V+ + I + + E+P P Y+Y
Sbjct: 173 DRVVECIKVILDLISESPVKGRTQPYDPNFYDETYDYGGF 212
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V ++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+ + +
Sbjct: 321 VTTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQ--IQ 378
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 379 NAQFLLQ 385
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 322 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---DDRIITITGTQ 374
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ NA + N +++ S Y+Y
Sbjct: 375 DQIQNAQFLLQNSVKQ--------FSEDYSY 397
>gi|375065844|ref|NP_001243477.1| heterogeneous nuclear ribonucleoprotein K [Canis lupus familiaris]
Length = 464
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I+K ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|449514357|ref|XP_002192510.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Taeniopygia
guttata]
Length = 434
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + ILK E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGG 170
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 361 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 420
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 421 LQNSVKQYA 429
>gi|74225344|dbj|BAE31602.1| unnamed protein product [Mus musculus]
Length = 459
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G+R ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 424
Query: 113 NALQ 116
LQ
Sbjct: 425 YLLQ 428
>gi|242785360|ref|XP_002480578.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218720725|gb|EED20144.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 367
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 22/197 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
E GE+E AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 ESGELEEQPKTDEEYAQAILTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A +V G V N IR
Sbjct: 89 GVHDRVLTVTG-----ALQGCARAYSIVAKGLLEG------APQVGMGGVVQNNGTHPIR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPR 223
A+ EIG L ++ R
Sbjct: 192 EKAVWEIGKCLIDDWQR 208
>gi|392333155|ref|XP_003752811.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V I++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNTQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|74198765|dbj|BAE30613.1| unnamed protein product [Mus musculus]
Length = 450
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G+R ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 424
Query: 113 NALQQIAALILKDDDSNS 130
LQ + DSN+
Sbjct: 425 YLLQNSVKSMQMLKDSNA 442
>gi|403270472|ref|XP_003927203.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Saimiri boliviensis boliviensis]
Length = 585
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 163 REQGNAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 220
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ + A ++ +++L
Sbjct: 221 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEAEETKLAEEIP--------LKIL 266
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A
Sbjct: 267 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAC 322
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
A +EI +LRE +++++ P N SA+
Sbjct: 323 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 357
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 402 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 461
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 462 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 509
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 510 VIGKGGKTVNELQNLTSAEVIV 531
>gi|332856422|ref|XP_524310.3| PREDICTED: RNA-binding protein Nova-2 [Pan troglodytes]
Length = 607
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
P P H G R G + S PK + + ++++PS G +IGK G I ++++E
Sbjct: 124 PRPCHPAHG---RSPGSV--SPPK--TEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 176
Query: 79 TKATIKIA---DAIARHEERVIII--SSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
T ATIK++ D ERV ++ +++ + V S +++I + K + N
Sbjct: 177 TGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQP 236
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ A +L++ S AG +IG G ++ + SGA + + +Q P + E
Sbjct: 237 QTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE- 292
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENP 221
RVV +SG+ V A+ I +++E+P
Sbjct: 293 -RVVTVSGEPEQVHKAVSAIVQKVQEDP 319
>gi|345785612|ref|XP_855043.2| PREDICTED: RNA-binding protein Nova-2 [Canis lupus familiaris]
Length = 597
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DA 88
E + G + + RA+ + ++++PS G +IGK G I ++++ET ATIK++ D
Sbjct: 120 ERTDTSGPNLQIRAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 179
Query: 89 IARHEERVIII--SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ERV ++ +++ + V S +++I + K + N + A +
Sbjct: 180 YPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK 239
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG+ V
Sbjct: 240 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQV 294
Query: 207 LNALVEIGNQLRENP 221
A+ I +++E+P
Sbjct: 295 HKAVSAIVQKVQEDP 309
>gi|344232044|gb|EGV63923.1| hypothetical protein CANTEDRAFT_104592 [Candida tenuis ATCC 10573]
Length = 408
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 39/195 (20%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R+++ S++ G +IG+ G I IR+ET I+ +A +ER++ +S + +
Sbjct: 99 YRLLISSKESGCLIGQSGSVINSIRQETDTKAGISKLLAHTQERILTVS-----GTLDNC 153
Query: 112 ENALQQIAALILKDDDSNSEASKVA--------------------------AGHVAANTI 145
A+ + +++ ++A+ A AGH + +
Sbjct: 154 SKAISYFSQALIEAQQHEADAASTASAGPMPSSVEEYPHFPLRQLSIHKNIAGH--STVL 211
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLLI SQ G +IG G I++++ G ++ I + + LP ++R+V++ G VP
Sbjct: 212 RLLIPNSQMGTIIGAKGARIQRIQQVFGVSM-IASKSFLP-----GSNERLVELQGSVPE 265
Query: 206 VLNALVEIGNQLREN 220
+ AL I L E+
Sbjct: 266 LYAALRVISRCLIED 280
>gi|473912|gb|AAA21731.1| phosphoprotein [Mus cookii]
Length = 464
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVEVLNYPH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI + AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQTLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 441
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 442 DQIQNAQYLLQNSVKQ 457
>gi|328716031|ref|XP_001944817.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 415
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 49 DVLFRI-IVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
DV+ I I+ ++I +IG+ G ++ +R +++ATI I D+ ER++ ++ N+
Sbjct: 18 DVVLTIRILMGKEILPLIGEYGEVVRDLRNQSEATITITDS--STPERIVTVTG----NI 71
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQN 164
N +Q+ ALI K + NS + ++N TI+L++ SQ G LIG G
Sbjct: 72 -----NIIQKAFALITKILEQNSPTHLQNSRKPSSNNSTTIKLIVPASQCGSLIGKGGVK 126
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I ++R +SGA +V +A + L + ++R V ISG A+ A+ +I + E P R
Sbjct: 127 IREIREASGA-MVNVASDLL-----QNSTERTVSISGTAEAITEAIHQICIVMLETPGR- 179
Query: 225 VISISPAYNYSAIRPAQPFV 244
P Y +PFV
Sbjct: 180 ----GPTVAY------RPFV 189
>gi|426258298|ref|XP_004022751.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
Length = 330
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 24 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 83
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 84 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 141
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + +DR
Sbjct: 142 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPQSTDR 195
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 196 VVLIGGKPDRVVECIKIILDLISESP 221
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 22/185 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNV 107
D R+++ G +IG +G +I+++RE T+ TIK+ + + +RV++I K D V
Sbjct: 148 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKP-DRV 206
Query: 108 VSDAENALQQIAALILK------DDDSNSEASKVAAGHVAANTIR-----LLIAGSQ--A 154
V + L I+ +K D + E + + R + G + A
Sbjct: 207 VECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGREDLA 266
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG GQ I+++R+ SGA+I I P + DR++ I+G + NA +
Sbjct: 267 GSIIGKGGQRIKQIRHESGASIKIDEPLE-------GSEDRIITITGTQDQIQNAQYLLQ 319
Query: 215 NQLRE 219
N +++
Sbjct: 320 NSVKQ 324
>gi|255943089|ref|XP_002562313.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587046|emb|CAP94706.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 24/207 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
D+ R IV S++ G +IGK G + +R+ET ++ + +RV+ ++ + +
Sbjct: 46 DLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGQ-----L 100
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQN 164
A +A +L+ A ++ G + +N +RLLI+ +Q G +IG G
Sbjct: 101 RSLARAYAIVAKGLLEG------APQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLK 154
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++ R
Sbjct: 155 IKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLLDDWQRG 208
Query: 225 VISISPAYNYSAIRPAQPFVEPTSGQP 251
++ YN A+R + +P + P
Sbjct: 209 TGTV--LYN-PAVRASLSGSQPLNNNP 232
>gi|449304748|gb|EMD00755.1| hypothetical protein BAUCODRAFT_60994 [Baudoinia compniacensis UAMH
10762]
Length = 333
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 24/201 (11%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + ++R++T ++ + +RV+ ++
Sbjct: 14 AQAQ-ITLRAIVTSKEAGVIIGKAGQNVAELRDKTGVRAGVSKVVPGVHDRVLTVTGP-- 70
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGM 160
++ A +A ++K A ++ G V AN IRLLI+ +Q G +IG
Sbjct: 71 ---LTGISEAYGLVADGLVKG------APQMGMGGVVANPNTHPIRLLISHNQMGTIIGR 121
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I++++++SG +V LP ++R+V+I G V A+ EIG L ++
Sbjct: 122 QGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEIQGTPDGVQKAVWEIGKCLIDD 175
Query: 221 PPRQVISI--SPAYNYSAIRP 239
R ++ SPA P
Sbjct: 176 QERGYGTVLYSPAVRVQGAAP 196
>gi|452846671|gb|EME48603.1| hypothetical protein DOTSEDRAFT_67594 [Dothistroma septosporum
NZE10]
Length = 361
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +RE+T ++ + +RV+ ++
Sbjct: 38 AQAQ-LTLRAIVTSKEAGVIIGKAGQNVADLREKTGVRAGVSKVVPGVHDRVLTVT---- 92
Query: 105 DNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIG 159
AL IA A L D A ++ G V N IRLLI+ +Q G +IG
Sbjct: 93 --------GALTGIADAYGLVADSLVKGAPQMGMGGVVGNPNTHPIRLLISHNQMGTIIG 144
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I++++++SG +V LP ++R+V++ G + A+ EIG L +
Sbjct: 145 RQGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPDGIQKAVWEIGKCLVD 198
Query: 220 NPPRQVISI--SPA 231
+ R ++ SPA
Sbjct: 199 DEQRGYGTVLYSPA 212
>gi|452989355|gb|EME89110.1| hypothetical protein MYCFIDRAFT_71441 [Pseudocercospora fijiensis
CIRAD86]
Length = 360
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R IV S++ G +IGK G + +R++T ++ + +RV+ ++ ++
Sbjct: 41 LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT-----GALT 95
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQNI 165
+A +A ++K ++ G V N IRLLI+ +Q G +IG G I
Sbjct: 96 GISDAYGLVADSLVKG------VPQMGMGGVVGNPNTHPIRLLISHNQMGTIIGRQGLKI 149
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++++SG +V LP ++R+V++ G V A+ EIG L ++ R
Sbjct: 150 KQIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPEGVQKAVWEIGKCLIDDEQRGY 203
Query: 226 ISI--SPAYNYSAIRPAQPF 243
++ SPA PA P
Sbjct: 204 GTVLYSPAVRVQGGAPAPPL 223
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFR-IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R +G +G P R +D+ + I +P+ +G +IG+ G +I +IR+ + A I IA A
Sbjct: 257 RRNGPSDGGPPPRPEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISIAKA 315
>gi|354484186|ref|XP_003504271.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Cricetulus griseus]
Length = 487
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G S R+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHSGSSSQTRQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 165
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ + A +V +++L
Sbjct: 166 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEAEDTKLAEEVP--------LKIL 211
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G + A N
Sbjct: 212 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTIDACAN 267
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY 234
A +EI +LRE +++++ Y
Sbjct: 268 AEMEIMKKLREAFENDMLAVNSHSGY 293
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 320 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 374
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 375 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 427
Query: 173 GATIVI 178
A +++
Sbjct: 428 SAEVIV 433
>gi|357146019|ref|XP_003573848.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 470
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 8/207 (3%)
Query: 17 TEPEPRHDVSGKRRREDGEIEGS-DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
TEPE V E EG P+ +FR++V ++G +IG+ G I+++
Sbjct: 53 TEPEQHPPVPAPTNSASTEEEGEFRPRWPGFPGASVFRLVVAGDKVGGLIGRRGETIRRL 112
Query: 76 REETKATIKI---ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
EET+A +++ AD +A ++ V+I ++++ ++ A +A +I + + + N+
Sbjct: 113 CEETRARVRVLDPADGVAG-QQIVLISATEETQAELAPAMDAAIKIFKHVNEIEGINASV 171
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +A + RLL+ QA LIG G I+ ++ ++G+TI I+ + L
Sbjct: 172 T-FSASAPEICSARLLVPKEQAAHLIGKQGIMIKSIQETTGSTIRIIDKDD--LLNYRMV 228
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRE 219
+R+V+I G LNAL + LR+
Sbjct: 229 DERIVEILGASLKALNALKSVLGLLRK 255
>gi|348519757|ref|XP_003447396.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Oreochromis niloticus]
Length = 611
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 42/234 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDLTI----YNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSGQPLL 253
+ +I+ P N +A+ R A P V P P L
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAPAGYNPFL 408
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 432 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 490
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 491 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 538
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPAVLNA---LVEIGNQL 217
G+ + +L+N + A +++ P + E+D V V+ISG A A + EI Q+
Sbjct: 539 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFASQTAQRKIREIIQQV 592
Query: 218 R--ENPPRQVISISPAYN 233
+ E +Q ++SP ++
Sbjct: 593 KQQEQKHQQGAAVSPHHS 610
>gi|255719726|ref|XP_002556143.1| KLTH0H06050p [Lachancea thermotolerans]
gi|238942109|emb|CAR30281.1| KLTH0H06050p [Lachancea thermotolerans CBS 6340]
Length = 392
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D E +DP + R++ +Q ++G G +I +++EET I ++D
Sbjct: 34 KRVALDDTEETNDPGNEINKDYIHLRMLCLVKQASMIVGPGGEKISRMKEETNTRINVSD 93
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTI 145
I ERVI I + D + ++ ++++ + +++ E+S+ + A T+
Sbjct: 94 NIRGVPERVIFIRGRCED---------VAKVFGMVVRAINGETDGESSEQS----ATLTL 140
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+LI GC+IG G + ++ S A + + P LP+ +DR++ +SG A
Sbjct: 141 NILIPHHMMGCVIGRQGSRLREIEELSAAKL-MAGPQTLPM-----SNDRILCVSGVADA 194
Query: 206 VLNALVEIG 214
+ A +G
Sbjct: 195 IHIATYYVG 203
>gi|395334662|gb|EJF67038.1| cytoplasmic protein [Dichomitus squalens LYAD-421 SS1]
Length = 327
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 15/183 (8%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
A D L R +V ++ G +IGK G + ++RE+T ++ I ERV+
Sbjct: 25 ADDSLTLRALVSTKDAGVIIGKAGKNVAELREQTGVKAGVSKVIPGVHERVL-------- 76
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
V E + + ++ + +N + + IRLLI+ + G +IG +G I
Sbjct: 77 TVTGSVEGVAKAYSLIVSQLVSANPSSPVTSNSSSPTTAIRLLISHNLMGSVIGRNGLKI 136
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ +++SSGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R V
Sbjct: 137 KAIQDSSGARMV-ASKDMLP-----QSTERIVEVQGSSESIGRAIEEIGRCLLEDWERGV 190
Query: 226 ISI 228
++
Sbjct: 191 GTV 193
>gi|291358560|gb|ADD96765.1| heterogeneous nuclear ribonuclear protein K [Capra hircus]
Length = 441
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 369 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 428
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 429 LQNSVKQYSGKFF 441
>gi|256083133|ref|XP_002577804.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230299|emb|CCD76470.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 298
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL+ SQAGC+IG +G I++LR SG + L Q+ LC + +DRV+Q+ GDV
Sbjct: 11 LRLLVHQSQAGCVIGRAGYKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVG 65
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSG 249
VL+ L I L PP+ NY A R A F+ P G
Sbjct: 66 KVLDCLRSIAELLEGAPPK-----GSRQNYDA-RNADEFISPEYG 104
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ V ++ IG ++G+ G RI ++R E+ A IKI+ E+R+I I+
Sbjct: 227 QVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITG 275
>gi|358368755|dbj|GAA85371.1| KH domain RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 360
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+D +IE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DDVDIETTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ N A +A +L+ A ++ G + +N +R
Sbjct: 84 GVHDRVLTVTGPLNGTA-----RAYALVAKGLLEG------APQMGMGGIVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTI--LYN 211
>gi|426256848|ref|XP_004022049.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Ovis aries]
Length = 466
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C + +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 448
Query: 113 NALQ 116
LQ
Sbjct: 449 YLLQ 452
>gi|269784927|ref|NP_001161615.1| NOVA-like protein [Saccoglossus kowalevskii]
gi|268054231|gb|ACY92602.1| NOVA-like protein [Saccoglossus kowalevskii]
Length = 516
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 24 DVSGKRRRE-DGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
D+S R+R +G++E PKR + + ++++PS G VIGK G + +++ E
Sbjct: 15 DISDSRKRPLEGDVESGIPKRTNIGGNDDNKYILKMLIPSAAAGSVIGKGGQTVVQLQRE 74
Query: 79 TKATIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALIL-KDDDSNSEASK 134
T A IK++ D ERV++I+ +L + ++ K DS A+K
Sbjct: 75 TGANIKLSKSNDYYPGTSERVVLITG---------TVESLTAVGNFVIEKVRDSPQLAAK 125
Query: 135 V----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
A A ++++I S AG +IG G I+ +G+ + I ++
Sbjct: 126 TGNESAVSQERARQVKIIIPNSTAGLIIGKGGATIKAFMEQTGSKLQISQKSE-----GV 180
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ S+RV+ ISG+ A A+ + ++++E+P
Sbjct: 181 NLSERVLTISGEGDANKKAMNAVISKVQEDP 211
>gi|63115359|gb|AAY33858.1| KH domain-containing protein [Betula platyphylla]
Length = 166
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
V + T RLL+ S+ GCLIG G + ++R + A I IL+ LP AS E D +VQI
Sbjct: 3 VISFTTRLLVPTSRIGCLIGKGGAIVTEMRRLTKANIRILSKENLPKVAS--EDDEMVQI 60
Query: 200 SGDVPAVLNALVEIGNQLREN 220
SGD+ +AL+++ +LR N
Sbjct: 61 SGDLDVAKDALMQVVTRLRAN 81
>gi|449281891|gb|EMC88850.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 330
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK + + ++ +I + ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINISEGNCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 174
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 268 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 314
>gi|410922719|ref|XP_003974830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Takifugu
rubripes]
Length = 434
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 21/185 (11%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+GKR ED + + S + R + V RI++ S+ G VIGK G I+ +R + KA++ +
Sbjct: 19 NGKRPAEDADEQKSFKRSRNCDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASVSV 78
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ ER++ IS+ ++ + E L+ I L E + +G +
Sbjct: 79 PDSSG--PERILSISA----DIKTVGEILLKIIPTL---------EEYQQYSGMDFDCEL 123
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G +
Sbjct: 124 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQ----ECCPQS--TDRVVLVGGKMER 177
Query: 206 VLNAL 210
V+ +
Sbjct: 178 VVECI 182
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V ++ +P G +IGK G RI++IR ++ A IKI + + E+R+I I+ + +
Sbjct: 359 VTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKIDEPLEGSEDRIITITG--TQDQIQ 416
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ +L D
Sbjct: 417 NAQFLLQSSVLHLLGHKD 434
>gi|426243970|ref|XP_004015811.1| PREDICTED: RNA-binding protein Nova-2 [Ovis aries]
Length = 255
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 10/186 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVI 97
P A+ + ++++PS G +IGK G I ++++ET ATIK++ D ERV
Sbjct: 5 PGSSAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVC 64
Query: 98 II--SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
++ +++ + V S +++I + K + N + A +L++ S AG
Sbjct: 65 LVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAG 124
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG G ++ + SGA + + +Q P + E RVV +SG+ V A+ I
Sbjct: 125 LIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQ 179
Query: 216 QLRENP 221
+++E+P
Sbjct: 180 KVQEDP 185
>gi|392513715|ref|NP_001254774.1| heterogeneous nuclear ribonucleoprotein K [Sus scrofa]
Length = 463
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 451 LQNSVKQYSGKFF 463
>gi|169775165|ref|XP_001822050.1| RNA-binding protein rnc1 [Aspergillus oryzae RIB40]
gi|238496215|ref|XP_002379343.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|83769913|dbj|BAE60048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694223|gb|EED50567.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|391872927|gb|EIT82002.1| polyC-binding proteins alphaCP-1 [Aspergillus oryzae 3.042]
Length = 357
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G+++ + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DEGDMDITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G V +N +R
Sbjct: 84 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGVVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG SG I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRSGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTI--LYN 211
>gi|348528027|ref|XP_003451520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 429
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 21/178 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ + N ++ + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSV----NASIDTIGEILLKIIPTL---------EEYQHYSGIDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGG 174
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 416
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 417 LQNSVRQYSGRFF 429
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 407
Query: 204 PAVLNALVEIGNQLRENPPR 223
+ NA + N +R+ R
Sbjct: 408 DQIQNAQYLLQNSVRQYSGR 427
>gi|145238284|ref|XP_001391789.1| RNA-binding protein rnc1 [Aspergillus niger CBS 513.88]
gi|134076273|emb|CAL00757.1| unnamed protein product [Aspergillus niger]
gi|350635790|gb|EHA24151.1| hypothetical protein ASPNIDRAFT_209528 [Aspergillus niger ATCC
1015]
Length = 360
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+D +IE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DDVDIETTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ N A +A +L+ A ++ G + +N +R
Sbjct: 84 GVHDRVLTVTGPLNGTA-----RAYALVAKGLLEG------APQMGMGGIVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTI--LYN 211
>gi|77736071|ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|426219903|ref|XP_004004157.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Ovis aries]
gi|426219905|ref|XP_004004158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ovis aries]
gi|426224282|ref|XP_004006301.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
gi|426256846|ref|XP_004022048.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Ovis aries]
gi|108860777|sp|Q3T0D0.1|HNRPK_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|74354615|gb|AAI02451.1| Heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|296484523|tpg|DAA26638.1| TPA: heterogeneous nuclear ribonucleoprotein K [Bos taurus]
Length = 464
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|147844462|emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]
Length = 473
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 39/208 (18%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-------IAR 91
S+ K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D I
Sbjct: 67 SEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIGX 126
Query: 92 HEERVIIISSKDNDNV---------------VSDAENALQQIAALI--LKDDDSNSEASK 134
E++++ + K DN+ +S A +A+ ++ + L + + + +
Sbjct: 127 MEKKMLSVLLKVVDNLLEKVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGLFDQ 186
Query: 135 VAAGH---VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
V G + A+T+R A G QN+ + +L N++P A+A
Sbjct: 187 VNTGEHWCICASTVRSWFAH------FGSKFQNLXAFSXE----VYLLXQNEVPFYAAAD 236
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRE 219
E R+V++ G+ V AL + LR+
Sbjct: 237 E--RIVELQGEALKVQKALEAVVGHLRK 262
>gi|302766557|ref|XP_002966699.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
gi|300166119|gb|EFJ32726.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
Length = 324
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIIISSKDNDNVV 108
R +V + G VIGK G I + ++ A I+++ + +RV ++S +
Sbjct: 17 LRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNHEYFPGTSDRVAVLSGS-----L 71
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+D A Q I + I+KDD+ + S ++LL+ + G +IG G NI+K
Sbjct: 72 ADVLTAFQLIISKIIKDDNQDDTKSI---------QVKLLVPKTVCGAIIGKGGSNIKKF 122
Query: 169 RNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
S A+I + + +Q LP DR+V I G+V ++ A+ I +L E +
Sbjct: 123 VEDSQASIKLSSQDQLLPGVI-----DRIVTIGGNVDQIIKAVTLILTKLTEESSYTETT 177
Query: 228 ISPAYNYSAIRPAQPFV 244
+P Y RP V
Sbjct: 178 STPLV-YPGTRPTSFIV 193
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++ R+E+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + +I+ ++D NS + A T+RL++ Q G LIG G I++
Sbjct: 67 ----AIFKAFVMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPAYQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
A TIRLL+ + G +IG G++ ++ R SGA I I N C +R++ ++
Sbjct: 12 ATLTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEGN----CP-----ERIITLT 62
Query: 201 GDVPAVLNALVEIGNQLREN-------------PPRQVISISPAYNYSAI 237
G A+ A V I ++L E+ PP + + PAY ++
Sbjct: 63 GPTNAIFKAFVMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPAYQCGSL 112
>gi|348519759|ref|XP_003447397.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Oreochromis niloticus]
Length = 581
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDLTI----YNPERTITVKGSIDACCKAEVEITKKLRE 352
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 402 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 460
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 461 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 508
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPAVLNA---LVEIGNQL 217
G+ + +L+N + A +++ P + E+D V V+ISG A A + EI Q+
Sbjct: 509 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFASQTAQRKIREIIQQV 562
Query: 218 R--ENPPRQVISISPAYN 233
+ E +Q ++SP ++
Sbjct: 563 KQQEQKHQQGAAVSPHHS 580
>gi|410897014|ref|XP_003961994.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Takifugu rubripes]
Length = 607
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 33/243 (13%)
Query: 21 PRHDVSGKRRREDGEIE----GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
PR G+ R G + G R QD+ RIIVP++ +G +IGKEG I+ +
Sbjct: 166 PRTRRGGRLSRNQGASQPGPSGEFGAPRTTQQDL--RIIVPTQYVGAIIGKEGLTIKNVT 223
Query: 77 EETKATIKIA-DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
++T++ + I A E+ I I S A + I ++ K+ + +
Sbjct: 224 KQTQSKVDIHRKENAGAAEKPITIHSTP-----EGCSAACRMIMEIMQKEANETKAMEDI 278
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
++++ + + G LIG G+N++K+ +G I I + L + + ++R
Sbjct: 279 P--------LKIIASNNYIGRLIGKQGRNLKKIEEETGTKITISSLQDLNI----YNNER 326
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---RPAQPFVEP 246
+ + G + A NA VEI +LRE + +I+ P N +A+ P + P
Sbjct: 327 TITVKGSLEACCNAEVEIMKKLREAYENDIAAINQQTSLIPGLNLNALGIFSSTLPVLSP 386
Query: 247 TSG 249
+G
Sbjct: 387 AAG 389
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKD 103
A+ Q+V + + +P++ +G +IGK+G I+++ A+IK+A A + ER++II+
Sbjct: 430 AQEQEVAY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKVAPAEMPDATERMVIITG-- 486
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+A+ Q LK+++ + +V + + + AG +IG G+
Sbjct: 487 ----TPEAQFKAQGRIFGKLKEENIFTGKEEVRL------ETHIKVPSTAAGRVIGKGGK 536
Query: 164 NIEKLRNSSGATIVI 178
+ +L++ + A +++
Sbjct: 537 TVNELQSLTSAEVIV 551
>gi|355753438|gb|EHH57484.1| hypothetical protein EGM_07121 [Macaca fascicularis]
Length = 464
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 21/207 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
GK ED E EG KR +++ RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKCLVEDME-EGQIFKRPGNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
Query: 86 ADAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASK 134
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 79 PDSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQ 136
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
G A +RLLI S AG +IG+ G I++LR ++ TI + H +D
Sbjct: 137 HYKGSDFACELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSAD 190
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENP 221
RVV I G V+ + I + + E+P
Sbjct: 191 RVVLIGGKPDRVVECIKIILDLISESP 217
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|407924223|gb|EKG17277.1| K-like protein [Macrophomina phaseolina MS6]
Length = 357
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 41 AQAQ-LTLRAIVSSKEAGVIIGKAGQNVANLRDETGVRAGVSKVVPGVHDRVLTVT---- 95
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLLIAGSQAGCLIGM 160
+S A +A +L+ A V G V + +RLLI+ +Q G +IG
Sbjct: 96 -GALSGISKAYHLVAKGLLEG------APSVGMGGVINTSGTHPVRLLISHNQMGTIIGR 148
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+G I++++++SG +V LP ++R+V+I G + A EIG L ++
Sbjct: 149 AGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEIQGTPEGIEKATWEIGKCLIDD 202
Query: 221 PPR 223
R
Sbjct: 203 HER 205
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R +++ +AG +IG +GQN+ LR+ +G A + + P H DRV+ ++G
Sbjct: 46 TLRAIVSSKEAGVIIGKAGQNVANLRDETGVRAGVSKVVPG-------VH--DRVLTVTG 96
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
+ + A + L E P + + N S P + +
Sbjct: 97 ALSGISKAYHLVAKGLLEGAPS--VGMGGVINTSGTHPVRLLI 137
>gi|440905354|gb|ELR55741.1| Heterogeneous nuclear ribonucleoprotein K [Bos grunniens mutus]
Length = 464
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C + +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++I E+ A+IKI + + E+R+I I+ + N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIHHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|376338927|gb|AFB33992.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338929|gb|AFB33993.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338931|gb|AFB33994.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338933|gb|AFB33995.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
Length = 86
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T +LLI +Q GCL+G G I ++R + A I IL LP C A +SD +VQI GD+
Sbjct: 4 TTKLLIPSNQTGCLLGKGGAIISEMRKQTRANIRILPKEDLPPC--ALDSDEMVQIVGDI 61
Query: 204 PAVLNALVEIGNQLRENPPRQV 225
A ALV++ ++LR R++
Sbjct: 62 RAARAALVQVTSRLRSFIHREI 83
>gi|226485617|emb|CAX75228.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL+ SQAGC+IG G I++LR SG + L Q+ LC S+ +DRV+Q+ GDV
Sbjct: 11 LRLLVHYSQAGCVIGRGGYKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIQLVGDVG 65
Query: 205 AVLNALVEIGNQLRENPPR 223
VLN L I L PP+
Sbjct: 66 KVLNCLQSIAELLEGAPPK 84
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ V ++ IG ++G+ G RI ++R E+ A IKI+ E+R+I I+
Sbjct: 226 QVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKLEPGVEDRIITITG 274
>gi|226485615|emb|CAX75227.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL+ SQAGC+IG G I++LR SG + L Q+ LC S+ +DRV+Q+ GDV
Sbjct: 11 LRLLVHYSQAGCVIGRGGYKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIQLVGDVG 65
Query: 205 AVLNALVEIGNQLRENPPR 223
VLN L I L PP+
Sbjct: 66 KVLNCLQSIAELLEGAPPK 84
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ V ++ IG ++G+ G RI ++R E+ A IKI+ E+R+I I+
Sbjct: 226 QVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKLEPGVEDRIITITG 274
>gi|223649086|gb|ACN11301.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 440
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E S + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 ETNGKRPAEDAEEEQSFKRSRNTDDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS++ + + E L+ I L E + G
Sbjct: 78 SVPDSSG--PERILSISAE----IETVGEILLKIIPTL---------EEYQQYNGMDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G
Sbjct: 123 ELRLLIHQSLAGSIIGVKGAKIKELRENTQTSIKLFQ----ECCPQS--TDRVVLVGGKS 176
Query: 204 PAVLNAL 210
V+ +
Sbjct: 177 ERVVECI 183
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + +
Sbjct: 365 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQ--IQ 422
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ A +L D
Sbjct: 423 NAQYLLQNSALHLLGHQD 440
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+++S S + G + N T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 341 DNNSSWDSYQSGGRGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 400
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
PL S DR++ ISG + NA
Sbjct: 401 ----DEPLEGS---EDRIITISGTQDQIQNA 424
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 543 QATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL-------- 594
Query: 106 NVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
VS +A+ + LI++ +D+ AS + V TIR ++ S+ G +IG G
Sbjct: 595 -TVSGPLDAVSKAFGLIVRRINDEPFDLASVPGSKSV---TIRFIVPNSRMGSVIGKQGS 650
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++++ +SGA + LP ++RV+ ISG AV A+ +G+ L E+P R
Sbjct: 651 KIKEIQEASGARLTA-GEAMLP-----GSTERVLSISGVADAVHIAVYYVGSILLEHPDR 704
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 54/224 (24%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 627 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 682
Query: 106 NVVSDAEN-ALQQIAALILKDDDSNSE---------ASKVAAGHVAAN------------ 143
V+DA + A+ + +++L+ D N+ AG AN
Sbjct: 683 --VADAVHIAVYYVGSILLEHPDRNANNLPYRPTAGGPSTRAGAAGANPYAAPQQPFGYG 740
Query: 144 ------------------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
T ++ I GC+IG G I ++R+ S + I I+
Sbjct: 741 APAAGFGGAPAGAGGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKIM 800
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
P A ++R+V I+G P + A+ + +L + R
Sbjct: 801 EPGAGIA-AGGSGNERLVTITGPPPNIQMAVSLLYQRLEQEKMR 843
>gi|378726019|gb|EHY52478.1| hypothetical protein HMPREF1120_00690 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 34 GEIEGSDPKRR---AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
GE E PK A++Q + R IV +++ G +IGK G + +REET ++ +
Sbjct: 28 GERENEQPKTEEDYAQSQ-LTLRAIVSTKEAGVIIGKAGKNVADLREETGVKAGVSKVVQ 86
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ +S A +A +L+ A +V G V N IR
Sbjct: 87 GVHDRVLTVTGP-----LSGIAKAYSLVAKGLLEG------APQVGMGGVVQNNGTHPIR 135
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 136 LLISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 189
Query: 207 LNALVEIGNQLRENPPR 223
A+ EIG L ++ R
Sbjct: 190 DKAVWEIGKCLVDDWQR 206
>gi|226485613|emb|CAX75226.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL+ SQAGC+IG G I++LR SG + L Q+ LC S+ +DRV+Q+ GDV
Sbjct: 11 LRLLVHYSQAGCVIGRGGYKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIQLVGDVG 65
Query: 205 AVLNALVEIGNQLRENPPR 223
VLN L I L PP+
Sbjct: 66 KVLNCLQSIAELLEGAPPK 84
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
++ V ++ IG ++G+ G RI ++R E+ A IKI+ E+R+I I+
Sbjct: 226 QVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKLEPGVEDRIITITG 274
>gi|302792551|ref|XP_002978041.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
gi|300154062|gb|EFJ20698.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
Length = 324
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIIISSKDNDNVV 108
R +V + G VIGK G I + ++ A I+++ + +RV ++S +
Sbjct: 17 LRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNHEYFPGTSDRVAVLSGS-----L 71
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+D A Q I + I+KDD+ + S ++LL+ + G +IG G NI+K
Sbjct: 72 ADVLTAFQLIISKIIKDDNQDDTKSI---------QVKLLVPKTVCGAIIGKGGSNIKKF 122
Query: 169 RNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
S A+I + + +Q LP DR+V I G+V ++ A+ I +L E +
Sbjct: 123 VEDSQASIKLSSQDQLLPGVI-----DRIVTIGGNVDQIIKAVTLILTKLTEESSYTETT 177
Query: 228 ISPAYNYSAIRPAQPFV 244
+P Y P PF+
Sbjct: 178 STPLV-YPGTGPT-PFI 192
>gi|425769369|gb|EKV07864.1| hypothetical protein PDIP_71440 [Penicillium digitatum Pd1]
gi|425770994|gb|EKV09451.1| hypothetical protein PDIG_62050 [Penicillium digitatum PHI26]
Length = 364
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 24/207 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ R IV S++ G +IGK G + +R+ET ++ + +RV+ ++ + +
Sbjct: 44 ELTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGQ-----L 98
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQN 164
A +A +L+ A ++ G + +N IRLLI+ +Q G +IG G
Sbjct: 99 RSLARAYAIVAKGLLEG------APQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLK 152
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++ R
Sbjct: 153 IKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLLDDWQRG 206
Query: 225 VISISPAYNYSAIRPAQPFVEPTSGQP 251
++ YN A+R + +P + P
Sbjct: 207 TGTV--LYN-PAVRASLSGSQPLNSNP 230
>gi|209151855|gb|ACI33086.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 433
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED E E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMEEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYNGIDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C + +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + I + + E P
Sbjct: 177 DRVVECIKVILDLVSEAP 194
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 361 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITINGTQDQIQNAQYL 420
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 421 LQNSVKQYSGRFF 433
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 15/120 (12%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT--------- 65
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
NA+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R
Sbjct: 66 NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIR 124
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
A+ A I ++L E+ IS S + +A RP
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP 96
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 248 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 307
Query: 95 RVIIIS 100
R + I+
Sbjct: 308 RQVTIT 313
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
V R++VP+ Q G +IGK G +I++IRE T+A +K
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIREVTEAALK 132
>gi|448533092|ref|XP_003870552.1| hypothetical protein CORT_0F01960 [Candida orthopsilosis Co 90-125]
gi|380354907|emb|CCG24423.1| hypothetical protein CORT_0F01960 [Candida orthopsilosis]
Length = 384
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IREET I+ IA ER++ +S K + D
Sbjct: 120 YRVLVSAKEAGCLIGQNGKVIDSIREETNTKAGISRLIAGTHERILTVSGK-----LDDC 174
Query: 112 ENALQQIAALILKD--DDSN----SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
AL A +L + N + S +RLLI SQ G LIG G I
Sbjct: 175 AKALSYFAQALLGSSIETYNYFPLKQLSSTPCVEHETTILRLLIPNSQMGTLIGARGARI 234
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
++++++ A +I + + LP ++R+V++ G V + +AL
Sbjct: 235 QQIQHNF-AISMIASKSFLP-----GSNERLVELQGTVDDLYDAL 273
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADAIARHEERVIIISSKDNDN 106
+ + R+++P+ Q+G +IG G RIQ+I+ + I + ER++ +
Sbjct: 210 ETTILRLLIPNSQMGTLIGARGARIQQIQHNFAISMIASKSFLPGSNERLVEL-----QG 264
Query: 107 VVSDAENALQQIAALILKDDDSN--SEASKVAAGH--VAANTIRLLIAGSQAGCLIGMSG 162
V D +AL+ I+ +++D S+ + V H +T + G LIG +G
Sbjct: 265 TVDDLYDALRIISRCLIEDFSSSVGTTTYYVPKSHQLTRKSTATISFPNDMVGALIGKNG 324
Query: 163 QNIEKLRNSSGATIVI 178
I+ +R SGA I I
Sbjct: 325 SRIQGVRKVSGAMIGI 340
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
PK + I P+ +G +IGK G RIQ +R+ + A I I +A+ +ERV I+
Sbjct: 296 PKSHQLTRKSTATISFPNDMVGALIGKNGSRIQGVRKVSGAMIGIGEAVEGSDERVFTIT 355
>gi|426219907|ref|XP_004004159.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Ovis aries]
Length = 439
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C + +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENP 221
+ + I + + E+P
Sbjct: 179 VECIKIILDLISESP 193
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 426
Query: 111 AENALQQIAALIL 123
+N+++Q +
Sbjct: 427 LQNSVKQYSGKFF 439
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 417
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +++
Sbjct: 418 DQIQNAQYLLQNSVKQ 433
>gi|409045569|gb|EKM55049.1| hypothetical protein PHACADRAFT_95060 [Phanerochaete carnosa
HHB-10118-sp]
Length = 409
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ N
Sbjct: 107 AANIHMRCLIVTQDASIIIGKAGTHVNEIREKSGARVMVSESIPGNPERIL--------N 158
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + V A TI+ +I S+ G +IG G I+
Sbjct: 159 VSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR--AVTIKFMIPNSRMGSVIGKGGAKIK 216
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++++SGA + + LP ++RV+ +SG A+ A IGN L E R
Sbjct: 217 EIQDASGARLN-ASEGMLP-----GSTERVLSVSGVADAIHIATYYIGNILIEANERM-- 268
Query: 227 SISPAYNYSAIRPA 240
P+Y S+ RP+
Sbjct: 269 ---PSYQNSSYRPS 279
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 48/194 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVV 108
V + ++P+ ++G VIGK G +I++I++ + A + ++ + ERV+ +S V
Sbjct: 193 VTIKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNASEGMLPGSTERVLSVSG------V 246
Query: 109 SDAEN-ALQQIAALILKDDD---------------SNSEA-----SKVAAGHVAA----- 142
+DA + A I ++++ ++ S S A S V GH +A
Sbjct: 247 ADAIHIATYYIGNILIEANERMPSYQNSSYRPSSTSRSRAPYQGSSYVPIGHASALLQPH 306
Query: 143 --------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP-------NQLPLC 187
T ++ I GC+IG G I ++R+ S + I I+ P N P
Sbjct: 307 APPPGAQLQTQQIYIPNDLVGCIIGKGGSKINEIRHVSASQIKIMEPGAVGVGMNGQPAP 366
Query: 188 ASAHESDRVVQISG 201
A+AHE +R+V I+G
Sbjct: 367 AAAHEGERLVVITG 380
>gi|403299426|ref|XP_003940488.1| PREDICTED: RNA-binding protein Nova-2 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 216 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 275
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 276 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 335
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 336 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 388
>gi|390479167|ref|XP_002762342.2| PREDICTED: RNA-binding protein Nova-2-like [Callithrix jacchus]
Length = 608
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 129 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 188
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 189 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 248
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 249 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 301
>gi|164655395|ref|XP_001728827.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
gi|159102713|gb|EDP41613.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
Length = 382
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
++ R ++ + +IGK+G I +IRE + A + I+++I + ER++ VS
Sbjct: 85 IVMRALIITSDASVIIGKQGRHINEIRELSNARLNISESIPSNPERIL---------TVS 135
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +A+ + L+++ + G AA +IR +I S+ G +IG G I++++
Sbjct: 136 GALDAVSKAFGLLVRRINDEPFDQPSLPGSRAA-SIRFIIPNSRMGAIIGRQGSKIKEIQ 194
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+SGA + LP ++R++ I+G A+ A+ +G L E+P R
Sbjct: 195 EASGARLHA-GETMLP-----GSTERILSITGVADALHIAVYYVGATLLEHPDR 242
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 51/221 (23%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVI 97
S P RA + R I+P+ ++G +IG++G +I++I+E + A + + + ER++
Sbjct: 161 SLPGSRAAS----IRFIIPNSRMGAIIGRQGSKIKEIQEASGARLHAGETMLPGSTERIL 216
Query: 98 IISSKDNDNVVSDAEN-ALQQIAALILKDDD--SNSEASKVAAGHVAAN----------- 143
I+ V+DA + A+ + A +L+ D SN+ + AA + A
Sbjct: 217 SITG------VADALHIAVYYVGATLLEHPDRGSNNLPYRPAAVNRALTPSLVGSPLNSP 270
Query: 144 -------------------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
T ++ I GC+IG GQ I ++R S + I I
Sbjct: 271 SASMLALSATNSPKALASVLTPGLQTQQIFIPNDLVGCIIGKGGQKINEIRQLSASHIKI 330
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ N + A S+R+V I+G P + A+ + +L +
Sbjct: 331 MERNA-GIAAGGSGSERLVTITGPPPNIQMAVTLLYQRLEQ 370
>gi|238883031|gb|EEQ46669.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 365
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 71 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 125
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 126 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 185
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
+L+N+ ++ I + + LP ++R+V++ G V + ++L
Sbjct: 186 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL 223
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
I P+ +G +IGK G RI +R+ + A I I++AI ERV I+
Sbjct: 288 ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTIT 334
>gi|68473490|ref|XP_719303.1| hypothetical protein CaO19.13072 [Candida albicans SC5314]
gi|46441115|gb|EAL00415.1| hypothetical protein CaO19.13072 [Candida albicans SC5314]
Length = 369
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 73 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 127
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 128 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 187
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
+L+N+ ++ I + + LP ++R+V++ G V + ++L
Sbjct: 188 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL 225
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
I P+ +G +IGK G RI +R+ + A I I++AI ERV I+
Sbjct: 292 ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTIT 338
>gi|68473725|ref|XP_719187.1| hypothetical protein CaO19.5627 [Candida albicans SC5314]
gi|46440993|gb|EAL00294.1| hypothetical protein CaO19.5627 [Candida albicans SC5314]
Length = 368
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 126
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 127 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 186
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
+L+N+ ++ I + + LP ++R+V++ G V + ++L
Sbjct: 187 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL 224
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
I P+ +G +IGK G RI +R+ + A I I++AI ERV I+
Sbjct: 291 ISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTIT 337
>gi|389751124|gb|EIM92197.1| hypothetical protein STEHIDRAFT_89021 [Stereum hirsutum FP-91666
SS1]
Length = 339
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
QDVL R +V ++ G +IGK G + +R++T ++ I ERV+
Sbjct: 25 GQDVLTLRALVSTKDAGVIIGKAGKNVADLRDQTGVKAGVSKVIPGVHERVL-------- 76
Query: 106 NVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
V+ A +++ + ALI+ ++N + V++ + +IRLLI+ + G +IG +G
Sbjct: 77 -TVTGAVDSVAKAYALIIAQLVEANPASPSVSSSSGSHTSIRLLISHNLMGTIIGRNGLK 135
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ +++ SGA +V + + LP ++RVV + G ++ A+ EIG L E+ R
Sbjct: 136 IKAIQDGSGARMVA-SKDMLP-----QSTERVVDVQGSPESIGRAIEEIGRCLLEDWERG 189
Query: 225 VISI 228
+ ++
Sbjct: 190 LGTV 193
>gi|302508471|ref|XP_003016196.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
gi|291179765|gb|EFE35551.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
Length = 531
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 208 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 264
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 265 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 316
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L
Sbjct: 317 GLKIKYIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCL 366
>gi|351705765|gb|EHB08684.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Heterocephalus
glaber]
Length = 546
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 107 RQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 166
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 167 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 212
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 213 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 268
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 269 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 300
>gi|281348784|gb|EFB24368.1| hypothetical protein PANDA_018514 [Ailuropoda melanoleuca]
Length = 346
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|296825084|ref|XP_002850758.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
gi|238838312|gb|EEQ27974.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
Length = 367
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 22/197 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+ GE E AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 DQGEAEAPPKTDEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIR 146
+RV+ ++ + A +A +L+ A ++ G V N ++R
Sbjct: 89 GVHDRVLTVTGP-----LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPR 223
A+ EIG L ++ R
Sbjct: 192 EKAIWEIGKCLIDDWQR 208
>gi|395333911|gb|EJF66288.1| hypothetical protein DICSQDRAFT_159257 [Dichomitus squalens
LYAD-421 SS1]
Length = 405
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 26/220 (11%)
Query: 20 EPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
E R D + G GS P A ++ R ++ ++ +IGK G + +IRE++
Sbjct: 76 ESRGDSATASTAPGGTGSGSTP-----AANIHMRCLIVTQDASIIIGKGGSHVNEIREKS 130
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
A + ++++I + ER++ NV + + ++ + +D + V
Sbjct: 131 GARVMVSESIPGNPERIL--------NVSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR 182
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
A TI+ +I S+ G +IG G I++++++SGA + + LP ++R++ +
Sbjct: 183 --AVTIKFMIPNSRMGSVIGKGGTKIKEIQDASGARLN-ASEGMLP-----GSTERLLSV 234
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
SG A+ A IGN L E R P+ N+S RP
Sbjct: 235 SGVADAIHIATYYIGNILIEANERM-----PSSNHSTYRP 269
>gi|430813652|emb|CCJ29027.1| unnamed protein product [Pneumocystis jirovecii]
Length = 383
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 16/227 (7%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G R DGE G + +Q V R +V +++ G +IG++G + ++R ++
Sbjct: 50 GVDRLFDGEGRGEEYDGYGGSQ-VTLRALVSTKEAGIIIGRQGKNVAELRGANGIKAGVS 108
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ +RV+ IS + VS A A+ Q A I D+ + ++ ++IR
Sbjct: 109 KVVPNIHDRVLTISGSLDG--VSKAYAAIAQ--AFI--DNPIGHSTNHASSSSEPQSSIR 162
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ + G +IG G I+ +++ SGA ++ LP ++R+V++ G V ++
Sbjct: 163 LLISHNMMGTIIGRQGLKIKHIQDLSGARMIAF-KEILP-----QSTERIVEVQGVVSSI 216
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGQPLL 253
A+ EIG L ++ R + ++ YN S +R + V G +L
Sbjct: 217 QTAIWEIGKCLIDDWERGIGTV--FYNPS-LRLSSTLVPGHQGNSIL 260
>gi|301786262|ref|XP_002928556.1| PREDICTED: RNA-binding protein Nova-2-like [Ailuropoda melanoleuca]
Length = 329
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|426340777|ref|XP_004034304.1| PREDICTED: poly(rC)-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|335299140|ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREE--TKATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSTNQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
V+ AE LQQ++ + S S + G ++ L+ GC+IG
Sbjct: 159 QGQYGAVTPAEVTKLQQLSGHAV-PFASPSMVPGLDPG-TQTSSQEFLVPNDLIGCVIGR 216
Query: 161 SGQNIEKLRNSSGATIVI 178
G I ++R SGA I I
Sbjct: 217 QGSKISEIRQMSGAHIKI 234
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|402221820|gb|EJU01888.1| hypothetical protein DACRYDRAFT_22325 [Dacryopinax sp. DJM-731 SS1]
Length = 355
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 14/185 (7%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A+ + R +V ++ G +IGK G + +RE T ++ + ERV+ ++
Sbjct: 25 AEILTLRALVSTKDAGIIIGKAGRNVADLRESTGVKAGVSKVVPGVHERVLSVTGP---- 80
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAA---GHVAANTIRLLIAGSQAGCLIGMSGQ 163
V A IA+ +L S + T+RLLI+ + G LIG SG
Sbjct: 81 -VEAVAKAYTLIASQLLSPPAPPSPPQTPPPSPPNQASTLTLRLLISHNLMGTLIGRSGL 139
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I+ ++++SG +V A LP ++RVV++ GD ++ A+ E+G L E+ R
Sbjct: 140 KIKSIQDASGVRMVA-AKEMLP-----QSTERVVEVIGDAESIGRAVEEVGRCLVEDWER 193
Query: 224 QVISI 228
V ++
Sbjct: 194 GVGTV 198
>gi|348522861|ref|XP_003448942.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Oreochromis niloticus]
Length = 588
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 21/180 (11%)
Query: 44 RAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIIS 100
R K Q D+ R++VP++ +G +IGKEG I+ I ++T + I I + E+ + I S
Sbjct: 188 RPKVQSDIPLRMLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITIHS 247
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ D NA + I ++ K+ ++ +++L S G LIG
Sbjct: 248 TPDG------CSNACKTIMDIMQKEALDTKFTEEIP--------LKILAHNSFVGRLIGK 293
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+N++K+ +G I I L L + +R + + G + A A E+ ++RE+
Sbjct: 294 EGRNLKKIEQETGTKITISPLQDLTL----YNPERTITVKGSIEACAKAEEEVMKKIRES 349
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 45/211 (21%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA--------------------D 87
+++ +I+ + +G++IGKEG ++KI +ET I I+ +
Sbjct: 274 EEIPLKILAHNSFVGRLIGKEGRNLKKIEQETGTKITISPLQDLTLYNPERTITVKGSIE 333
Query: 88 AIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDSNSE----- 131
A A+ EE V+ I S ++D + + NAL S S
Sbjct: 334 ACAKAEEEVMKKIRESYESDMAAMNLQSNLIPGLNLNALGLFPTTAPGMGPSMSSITPPG 393
Query: 132 ---ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA 188
S GH + T+ L I G +IG GQ+I++L + +GA+I I AP +
Sbjct: 394 AHGGSSSFGGHPESETVHLFIPALAVGAIIGKQGQHIKQLSHFAGASIKI-APAE----- 447
Query: 189 SAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
R+V I G A A I +L+E
Sbjct: 448 GMDAKQRMVIIVGPPEAQFKAQCRIFGKLKE 478
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A ++ ++I +V E
Sbjct: 411 HLFIPALAVGAIIGKQGQHIKQLSHFAGASIKIAPAEGMDAKQRMVI-------IVGPPE 463
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ + K + N K A + + AG +IG G+ + +L+N +
Sbjct: 464 AQFKAQCRIFGKLKEENFFGPKEEVKLEA----HIKVPAFAAGRVIGKGGKTVNELQNLT 519
Query: 173 GATIVILAPNQLPLCASAHESDRV-VQISGDVPAV 206
A +V+ P + E+D+V V+ISG A
Sbjct: 520 CAEVVV------PRDQTPDENDQVIVKISGHFFAC 548
>gi|326470883|gb|EGD94892.1| KH domain RNA-binding protein [Trichophyton tonsurans CBS 112818]
gi|326478447|gb|EGE02457.1| KH domain RNA-binding protein [Trichophyton equinum CBS 127.97]
Length = 367
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
E E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 32 EAEATPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVH 91
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLI 149
+RV+ ++ + A +A +L+ A ++ G V N ++RLLI
Sbjct: 92 DRVLTVTGP-----LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLI 140
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G + A
Sbjct: 141 SHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKA 194
Query: 210 LVEIGNQLRENPPR 223
+ EIG L ++ R
Sbjct: 195 IWEIGKCLIDDWQR 208
>gi|291575150|ref|NP_065151.2| poly(rC)-binding protein 4 isoform a [Homo sapiens]
gi|114587204|ref|XP_001170813.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan troglodytes]
gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens]
gi|119585570|gb|EAW65166.1| poly(rC) binding protein 4, isoform CRA_b [Homo sapiens]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|343427422|emb|CBQ70949.1| related to PBP2-PAB1 binding protein [Sporisorium reilianum SRZ2]
Length = 416
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 109 QATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL-------- 160
Query: 106 NVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
VS +A+ + LI++ +D+ + S + V TIR ++ S+ G +IG G
Sbjct: 161 -TVSGPLDAVSKAFGLIVRRINDEPFDQPSVPGSKSV---TIRFIVPNSRMGSVIGKQGS 216
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++++ +SGA + LP ++RV+ ISG AV A+ +G L E+ R
Sbjct: 217 KIKEIQEASGARLT-AGEAMLP-----GSTERVLSISGVADAVHIAVYYVGTILLEHQDR 270
Query: 224 QV--ISISPAYNYSAIRPAQPFVEPTSG--QPL 252
+ P + RP P P + QP
Sbjct: 271 NANNLPYRPTAGGPSTRPPAPGANPYAAPQQPF 303
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 54/220 (24%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 193 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 248
Query: 106 NVVSDAEN-ALQQIAALILKDDDSNSE-------------------ASKVAA-----GHV 140
V+DA + A+ + ++L+ D N+ A+ AA G+
Sbjct: 249 --VADAVHIAVYYVGTILLEHQDRNANNLPYRPTAGGPSTRPPAPGANPYAAPQQPFGYG 306
Query: 141 ---------------------AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ T ++ I GC+IG G I ++R+ S + I I+
Sbjct: 307 APAPPFGGAPAGAGGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKIM 366
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P + A ++R+V I+G P + A+ + +L +
Sbjct: 367 EPGAG-IAAGGSGNERLVTITGPPPNIQMAVSLLYQRLEQ 405
>gi|410951301|ref|XP_003982336.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Felis catus]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREE--TKATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSANQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
V+ AE LQQ++ + S S + G ++ L+ GC+IG
Sbjct: 159 QGQYGAVTPAEVTKLQQLSGHAV-PFASPSMVPGLDPG-TQTSSQEFLVPNDLIGCVIGR 216
Query: 161 SGQNIEKLRNSSGATIVI 178
G I ++R SGA I I
Sbjct: 217 QGSKISEIRQMSGAHIKI 234
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|358334721|dbj|GAA27863.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 759
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA- 86
KR +D + + PKR +V ++++PS G VIGK G I KI+++T +KI+
Sbjct: 16 KRPPDDVLLPETTPKRANCDDNVHLKVLIPSIAAGAVIGKYGEAIGKIQKDTNTKVKISK 75
Query: 87 --DAIARHEERVIIISSKDNDNVVSDAENALQ---QIAALILKDDDSNSEASKVAAGHVA 141
+ ERV +I V E + I IL+ D N A+ +V
Sbjct: 76 QDEFYPGTTERVCLI--------VGSMEGVMSVHNYIMDRILEKPDPNPHATCEGRLNVE 127
Query: 142 ANT-IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+ +++L+ S AG +IG G I++++ +GA + I
Sbjct: 128 RHKQVKILVPNSTAGMVIGKGGSYIQEIKEKTGAYVQI 165
>gi|327289205|ref|XP_003229315.1| PREDICTED: RNA-binding protein Nova-1-like [Anolis carolinensis]
Length = 507
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA- 86
++ R E+EG K + + ++++PS G +IGK G I ++++ET ATIK++
Sbjct: 48 EKERGGEELEGDLTKPDMEDGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK 107
Query: 87 --DAIARHEERVIII-SSKDNDNVVSD--AENALQQIAALILKDDDSNSEASKVAAGHVA 141
D ERV ++ + + N V + AE +++I ++K + N +
Sbjct: 108 SKDFYPGTTERVCLVQGTAEALNAVHNFIAEK-VREIPQSVVKPESVNILQPQTTMNPDR 166
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
A ++++ S AG +IG G ++ + SGA + + +Q P + E RVV ISG
Sbjct: 167 AKQAKVIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPEGINLQE--RVVTISG 221
Query: 202 DVPAVLNALVEIGNQLRENP 221
+ + A+ I +++E+P
Sbjct: 222 EPEQIHKAVDIIVQKIQEDP 241
>gi|70989127|ref|XP_749413.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|66847044|gb|EAL87375.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|159128828|gb|EDP53942.1| KH domain RNA-binding protein [Aspergillus fumigatus A1163]
Length = 355
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 19 DEGDMEVTPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 78
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 79 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 127
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 128 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 181
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 182 EKAVWEIGKCLIDDWQRGTGTI--LYN 206
>gi|301767224|ref|XP_002919001.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
Length = 360
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREE--TKATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSANQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLI 158
V+ AE LQQ++ + + S V A T L+ GC+I
Sbjct: 159 QGQYGAVTPAEVTKLQQLSGHAVP----FASPSMVPGLDPGAQTSSQEFLVPNDLIGCVI 214
Query: 159 GMSGQNIEKLRNSSGATIVI 178
G G I ++R SGA I I
Sbjct: 215 GRQGSKISEIRQMSGAHIKI 234
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|339242773|ref|XP_003377312.1| poly(rC)-binding protein 3 [Trichinella spiralis]
gi|316973900|gb|EFV57443.1| poly(rC)-binding protein 3 [Trichinella spiralis]
Length = 410
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ S P + Q + R+++ +++G +IGK + A I I+D ER
Sbjct: 28 LSNSTPPNLSLVQTI--RLLMQGKEVGSIIGK-----------SMAKINISDGTC--PER 72
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
++ I+ V + A + I ++D V + T RL++ +Q G
Sbjct: 73 IVTITGS-----VQAIDTAFKMICKKF--EEDQQQIPDSVPKPPI---TFRLIVPATQCG 122
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
CLIG G I+ +R ++GA+I + A LP + ++R V +SG A++ + +I
Sbjct: 123 CLIGRGGSKIKDIREATGASIQV-ASEMLP-----NSTERAVTLSGTAEAIIQCMNQICL 176
Query: 216 QLRENPPRQVI 226
L E+PP+ I
Sbjct: 177 ILLESPPKGAI 187
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 28 KRRREDGE-IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
K+ ED + I S PK + FR+IVP+ Q G +IG+ G +I+ IRE T A+I++A
Sbjct: 92 KKFEEDQQQIPDSVPK-----PPITFRLIVPATQCGCLIGRGGSKIKDIREATGASIQVA 146
Query: 87 -DAIARHEERVIIIS 100
+ + ER + +S
Sbjct: 147 SEMLPNSTERAVTLS 161
>gi|89272931|emb|CAJ83219.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 376
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 23/181 (12%)
Query: 43 RRAKAQDVL--FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+R++ D++ RI++ S+ G VIGK G I+ +R + A++ + D+ ER++ IS
Sbjct: 8 KRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSIS 65
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+D E + ILK E + G+ +RLLI S AG +IG+
Sbjct: 66 --------ADIETIGE-----ILKKIIPTLEEYQHFKGNDFDCELRLLIHQSLAGGIIGV 112
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I++LR + TI + C H +DRVV I G V+ + I + + E+
Sbjct: 113 KGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRVVECIKVILDLISES 166
Query: 221 P 221
P
Sbjct: 167 P 167
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+ + + +A+
Sbjct: 301 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQ--IQNAQ 358
Query: 113 NALQ 116
LQ
Sbjct: 359 FLLQ 362
>gi|327307466|ref|XP_003238424.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326458680|gb|EGD84133.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 367
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 101 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 206
Query: 222 PR 223
R
Sbjct: 207 QR 208
>gi|402906002|ref|XP_003915796.1| PREDICTED: RNA-binding protein Nova-2 [Papio anubis]
Length = 618
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 158 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 217
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 218 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 277
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 278 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 330
>gi|299116281|emb|CBN76089.1| poly(rc) binding protien (Partial) [Ectocarpus siliculosus]
Length = 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI----ARHEERVIIISSKDNDNVV 108
R+++P+ +IG VIGK G I+ IRE + A + I+D+ ++R ++++ N V
Sbjct: 104 RVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSDDR--MVTAAGTFNSV 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAG--HVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A + A + D D +A G AN+ RLLI +AG LIG G I+
Sbjct: 162 QLAFTHILSHAGAVGPDAD---PVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIK 218
Query: 167 KLRNSSGATIVI 178
+R SGA I I
Sbjct: 219 AIREQSGARIEI 230
>gi|441656325|ref|XP_004093124.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein Nova-2
[Nomascus leucogenys]
Length = 500
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 66 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 125
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 126 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 185
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 186 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 238
>gi|302654659|ref|XP_003019130.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
gi|291182834|gb|EFE38485.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 56 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 112
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 113 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 164
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 165 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 218
Query: 222 PR 223
R
Sbjct: 219 QR 220
>gi|431909188|gb|ELK12778.1| RNA-binding protein Nova-2 [Pteropus alecto]
Length = 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|115442854|ref|XP_001218234.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
gi|114188103|gb|EAU29803.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
Length = 355
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 24/204 (11%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
EIE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 26 EIEVTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKAGKNVADLRDETGVKAGVSKVVPGVH 85
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLI 149
+RV+ ++ + A +A +L+ A ++ G + +N +RLLI
Sbjct: 86 DRVLTVTGP-----LHGTARAYALVAKGLLEG------APQMGMGGIVSNNGTHPVRLLI 134
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G + A
Sbjct: 135 SHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKA 188
Query: 210 LVEIGNQLRENPPRQVISISPAYN 233
+ EIG L ++ R +I YN
Sbjct: 189 VWEIGKCLIDDWQRGTGTI--LYN 210
>gi|444727083|gb|ELW67590.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Tupaia
chinensis]
Length = 644
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 29/219 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 258 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 317
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 318 PEGTSA------ACKSILEIMYKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 363
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 364 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 419
Query: 222 PRQVISIS------PAYNYSAIR---PAQPFVEPTSGQP 251
+ S++ P N +A+ P PTSG P
Sbjct: 420 ENDIASMNLQAHLIPGLNLNALGLFPPTSGIPPPTSGPP 458
>gi|338714774|ref|XP_003363150.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Equus
caballus]
Length = 360
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREE--TKATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSANQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLI 158
V+ AE LQQ++ + + S V A T L+ GC+I
Sbjct: 159 QGQYGAVTSAEVTKLQQLSGHAVP----FASPSMVPGLDPGAQTSSQEFLVPNDLIGCVI 214
Query: 159 GMSGQNIEKLRNSSGATIVI 178
G G I ++R SGA I I
Sbjct: 215 GRQGSKISEIRQMSGAHIKI 234
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLREN 220
AV +A+ I +L E+
Sbjct: 70 AAVFHAVSMIAFKLDED 86
>gi|338723967|ref|XP_001497902.3| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Equus caballus]
Length = 638
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 248 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 307
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 308 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 353
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + I G+V A EI ++RE+
Sbjct: 354 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITIKGNVETCAKAEEEIMKKIRESY 409
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 410 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 441
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 27/197 (13%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 456 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 515
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 516 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 561
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEI 213
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G A A + EI
Sbjct: 562 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEI 615
Query: 214 GNQLRENPPRQVISISP 230
Q++++ ++ + P
Sbjct: 616 LTQVKQHQQQKALQSGP 632
>gi|392339927|ref|XP_003753941.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Rattus norvegicus]
gi|392347297|ref|XP_003749789.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Rattus norvegicus]
gi|149033413|gb|EDL88214.1| insulin-like growth factor 2, binding protein 3 [Rattus norvegicus]
Length = 579
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAV 206
N S A +V+ P + E+D+ VV+I+G A
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYAC 546
>gi|348581995|ref|XP_003476762.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Cavia porcellus]
Length = 360
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNS--SGATI 176
+R S GATI
Sbjct: 127 IRESPPKGATI 137
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETK--ATIKIADAIARHEERVIIISSKDNDNV 107
V R+++P+ Q G +IGK G +I++IRE ATI +++ +++S+ +V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLG---TVLLSANQGFSV 158
Query: 108 ------VSDAE-NALQQIAALILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLI 158
V+ AE LQQ++ + + S V AA T L+ GC+I
Sbjct: 159 QGQYGAVTPAEVTKLQQLSGHAVP----FASPSVVPGLDPAAQTSSQEFLVPNDLIGCVI 214
Query: 159 GMSGQNIEKLRNSSGATIVI 178
G G I ++R SGA I I
Sbjct: 215 GRQGSKISEIRQMSGAHIKI 234
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPAAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
I I+
Sbjct: 245 HITIT 249
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV +A+ I +L E+ + +PA S RP
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRP 100
>gi|315055291|ref|XP_003177020.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
gi|311338866|gb|EFQ98068.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
Length = 367
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 101 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 206
Query: 222 PR 223
R
Sbjct: 207 QR 208
>gi|326378263|gb|ADZ57231.1| neuro-oncological ventral antigen [Branchiostoma floridae]
Length = 511
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 101/205 (49%), Gaps = 29/205 (14%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + G+ EDG++ L ++++PS G +IGK G I ++++ET A
Sbjct: 52 RSNFGGEGGPEDGQL--------------LLKVLIPSYAAGSIIGKGGQTIVQLQKETGA 97
Query: 82 TIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
TIK++ D ER+++I+ + D++ S + +++I+ S SE + A
Sbjct: 98 TIKLSKSNDFYPGTTERIVVITGSE-DSLKSVHKFLMEKISQAPQPPAKSPSEQN---AN 153
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL--APNQLPLCASAHESDRV 196
+ A +++++ S AG +IG G I+ + +G+ + I A N + L +RV
Sbjct: 154 NNRAKQVKIVVPNSTAGLIIGKGGATIKFIMEQTGSRVQISQKATNGINL------PERV 207
Query: 197 VQISGDVPAVLNALVEIGNQLRENP 221
+ I+G+ A I N++ E+P
Sbjct: 208 ITITGEPEQNDKACAFIVNKIVEDP 232
>gi|119498177|ref|XP_001265846.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
gi|119414010|gb|EAW23949.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
Length = 360
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DEGDMEITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 84 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTI--LYN 211
>gi|209148569|gb|ACI32944.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 443
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED + E S + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 ETNGKRPAEDADEEQSYKRSRNTEDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ I ++ ++ + ++LK + E + G
Sbjct: 78 SVPDSSG--PERILSIGAE------------IETVGDILLKIIPTLEEYQQY-NGMDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ I + C + +DRVV +SG
Sbjct: 123 ELRLLIHQSLAGSIIGVKGAKIKELRENTQTNIKLFQ----ECCPQS--TDRVVLVSGKS 176
Query: 204 PAVLNAL 210
V+ +
Sbjct: 177 ERVVECI 183
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + +
Sbjct: 368 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQ--IQ 425
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ A +L D
Sbjct: 426 NAQYLLQNSALHLLGHQD 443
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+S+S S + G + N T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 344 DNSSSWNSYQSGGRASYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 403
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
PL S DR++ ISG + NA
Sbjct: 404 ----DEPLEGS---EDRIITISGTQDQIQNA 427
>gi|2673961|gb|AAB88661.1| astrocytic NOVA-like RNA-binding protein [Homo sapiens]
Length = 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 38 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 97
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 98 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 157
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 158 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 210
>gi|296477630|tpg|DAA19745.1| TPA: neuro-oncological ventral antigen 2-like [Bos taurus]
Length = 640
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 180 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 239
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 240 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 299
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 300 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 352
>gi|409051686|gb|EKM61162.1| hypothetical protein PHACADRAFT_247591 [Phanerochaete carnosa
HHB-10118-sp]
Length = 326
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A ++ + R +V ++ G +IGK G + ++RE T ++ I ERV+
Sbjct: 23 AGSEVLTLRSLVSTKDAGVIIGKAGKNVAELREATAVKAGVSKVIPGVHERVL------- 75
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
V E + A ++ + +++ + + ++IRLLI+ + G +IG SG
Sbjct: 76 -TVTGSVEGVAKAYAMIVNQLSSTSATSPVSPTPSSSQSSIRLLISHNLMGSVIGRSGLK 134
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ +++SSGA + LP ++R+V++ G ++ A+ +IG L E+ R
Sbjct: 135 IKAIQDSSGARM-FAQKEMLP-----QSTERIVEVHGSAESIGRAIEDIGRALLEDWDRA 188
Query: 225 VISI----SPAYNYSAIRPAQ 241
++ A S RP Q
Sbjct: 189 TGTVYFHPGAADERSGRRPGQ 209
>gi|345566886|gb|EGX49826.1| hypothetical protein AOL_s00076g710 [Arthrobotrys oligospora ATCC
24927]
Length = 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 32 EDGEIEGSDPKRRAK--AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+D E E +P R + AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 28 QDREGEAGEPVRTDEDYAQSPLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 87
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ +RV+ ++ + A +A ++ +S + + + +RLL
Sbjct: 88 VPGVHDRVLTVTGN-----LDGVAKAYAMVAQTLV-----DSPPGAIPTTPMGTHPVRLL 137
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 138 ISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGSADGIRQ 191
Query: 209 ALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 192 AIWEIGKCLVDDWQRGTGTI--LYN 214
>gi|359324034|ref|XP_003640270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Canis lupus familiaris]
Length = 466
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK ED E E + + R + V RI++ S+ G VIGK G I+ + + A++ +
Sbjct: 20 GKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHPTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
G +IGK G RI+++R E+ A+IKI + + E+RVI I+
Sbjct: 400 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITG 439
>gi|194376532|dbj|BAG57412.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 12/200 (6%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYYLVFVVF 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQ-----QIAALILKDDDSNSEASKVAAGHVA 141
D+I + I ++ E LQ + L L+ D + G
Sbjct: 80 DSILSISADIETIGEILK-KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDF 138
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G
Sbjct: 139 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGG 192
Query: 202 DVPAVLNALVEIGNQLRENP 221
V+ + I + + E+P
Sbjct: 193 KPDRVVECIKIILDLISESP 212
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 386 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 445
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 446 LQNSVKQYA 454
>gi|451847129|gb|EMD60437.1| hypothetical protein COCSADRAFT_99089 [Cochliobolus sativus ND90Pr]
Length = 364
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+GE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 EGEVIPRTEEEYAEAQ-LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGV 87
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLL 148
+RV+ ++ +S A A +L+ A + G V + IRLL
Sbjct: 88 HDRVLSVTGS-----LSGISKAYGLAAKGLLEG------APAMGMGGVIRTDGTHPIRLL 136
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I++++++SG +V LP ++RVV++ G +
Sbjct: 137 ISHNQMGTIIGRQGLKIKQIQDASGVRMV-AQKEMLP-----QSTERVVEVQGSPAGIEK 190
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
A+ EIG L ++ R ++ YN A+R QP V P
Sbjct: 191 AVWEIGKCLIDDHERGYGTV--LYN-PAVR-VQPGVGP 224
>gi|359324036|ref|XP_003640271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Canis lupus familiaris]
Length = 464
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK ED E E + + R + V RI++ S+ G VIGK G I+ + + A++ +
Sbjct: 20 GKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHPTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP 221
VV I G V+ + I + + E+P
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESP 217
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSDAENALQQIA 119
G +IGK G RI+++R E+ A+IKI + + E+RVI I+ + N +N+++Q A
Sbjct: 400 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQNSVKQYA 459
>gi|291219869|ref|NP_001025048.2| neuro-oncological ventral antigen 2 [Mus musculus]
Length = 492
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|47220208|emb|CAF98973.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + + A
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKAFA- 75
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ A ++D NS ++ +A T+RL++ SQ G LIG G I+++R +
Sbjct: 76 -----MIAYKFEEDIINSMSNSLATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMREA 128
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + + +R+V I+G
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGNCPERIVTITGPT 67
Query: 204 PAVLNALVEIGNQLREN 220
+ A I + E+
Sbjct: 68 DTIFKAFAMIAYKFEED 84
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SDP A + +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I
Sbjct: 258 SDPGLDATPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQIT 317
Query: 99 IS 100
I+
Sbjct: 318 IT 319
>gi|432873594|ref|XP_004072294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Oryzias
latipes]
Length = 433
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 21/198 (10%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED + S + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 17 ETNGKRPAEDADEHKSFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRSDYNASV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS+ ++ + E L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSISA----DIETVGEILLKIIPTL---------EEYQQYNGMDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQ----ECCPQS--TDRVVLVGGKS 175
Query: 204 PAVLNALVEIGNQLRENP 221
V+ + + + E P
Sbjct: 176 ERVVECVKTMLELISEAP 193
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 358 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 417
Query: 108 VSDAENALQQIAALIL 123
+N+++Q + +L
Sbjct: 418 QYLLQNSVKQYSGHLL 433
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+S+S S + G + + T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 334 DNSSSWDSYQSGGRGSYSDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 393
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
PL S DR++ I+G + NA + N +++
Sbjct: 394 ----DEPLEGS---EDRIITITGTQDQIQNAQYLLQNSVKQ 427
>gi|329663502|ref|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus]
Length = 492
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|5902724|ref|NP_002507.1| RNA-binding protein Nova-2 [Homo sapiens]
gi|33516944|sp|Q9UNW9.1|NOVA2_HUMAN RecName: Full=RNA-binding protein Nova-2; AltName: Full=Astrocytic
NOVA1-like RNA-binding protein; AltName:
Full=Neuro-oncological ventral antigen 2
gi|3851553|gb|AAC72355.1| RNA-binding protein Nova-2 [Homo sapiens]
gi|195934809|gb|AAI68367.1| Neuro-oncological ventral antigen 2 [synthetic construct]
Length = 492
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|291415485|ref|XP_002723980.1| PREDICTED: neuro-oncological ventral antigen 2 [Oryctolagus
cuniculus]
Length = 492
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|258566349|ref|XP_002583919.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
gi|237907620|gb|EEP82021.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
Length = 366
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 22/182 (12%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMS 161
+ A +A +L+ A +V G + N +RLLI+ +Q G +IG
Sbjct: 101 --LQGTAKAYGMVAKSLLEG------APQVGMGGIIQNNGTHPVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAVWEIGKCLIDDW 206
Query: 222 PR 223
R
Sbjct: 207 QR 208
>gi|451997944|gb|EMD90409.1| hypothetical protein COCHEDRAFT_1225891 [Cochliobolus
heterostrophus C5]
Length = 365
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+GE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 EGEVVPRTEEEYAEAQ-LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGV 87
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLL 148
+RV+ ++ +S A A +L+ A + G V + IRLL
Sbjct: 88 HDRVLSVTGS-----LSGISKAYGLAAKGLLEG------APAMGMGGVIRTDGTHPIRLL 136
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I++++++SG +V LP ++R+V++ G +
Sbjct: 137 ISHNQMGTIIGRQGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEVQGSPAGIEK 190
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
A+ EIG L ++ R ++ YN A+R QP V P
Sbjct: 191 AVWEIGKCLIDDHERGYGTV--LYN-PAVR-VQPGVGP 224
>gi|56753095|gb|AAW24757.1| SJCHGC01201 protein [Schistosoma japonicum]
Length = 270
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL+ SQAGC+IG G I++LR SG + L Q+ LC S+ +DRV+ + GDV
Sbjct: 11 LRLLVHYSQAGCVIGRGGYKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIHLVGDVG 65
Query: 205 AVLNALVEIGNQLRENPPR 223
VLN L I L PP+
Sbjct: 66 KVLNCLQSIAELLEGAPPK 84
>gi|395830897|ref|XP_003788549.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Otolemur garnettii]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|73976012|ref|XP_539474.2| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 1 [Canis lupus familiaris]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|2105469|gb|AAC35208.1| putative RNA binding protein KOC [Homo sapiens]
gi|4098297|gb|AAD09223.1| Koc1 [Homo sapiens]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 55 IVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAEN 113
+P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 411 FIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQF 464
Query: 114 ALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 465 KAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQNL 516
Query: 172 SGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQVIS 227
S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++ +
Sbjct: 517 SSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKALQ 570
Query: 228 ISP 230
P
Sbjct: 571 SGP 573
>gi|354475601|ref|XP_003500016.1| PREDICTED: poly(rC)-binding protein 2-like [Cricetulus griseus]
Length = 325
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 16/136 (11%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +I K+G ++K+REE+ A I+D ER+I ++
Sbjct: 17 RLLMHGKEVGSIIAKKGESVKKMREESGARTSISD--GNCPERIITLAGPT--------- 65
Query: 113 NALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
NA+ + A+I L++ S+S + AA +RL++ SQ G LIG G I+++R
Sbjct: 66 NAIFKAFAMIIDKLEEGISSSMTNSTAASRPPV-ALRLVVPASQCGSLIGKGGCKIKEIR 124
Query: 170 NSSGATIVILAPNQLP 185
S+GA + + A + LP
Sbjct: 125 ESTGAQVQV-AGDMLP 139
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + E I I+
Sbjct: 98 VALRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTEWAITIA 149
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+ G A T RLL+ G + G +I G++++K+R SGA I + + +
Sbjct: 6 IEGGLNATLTSRLLMHGKEVGSIIAKKGESVKKMREESGARTSI---------SDGNCPE 56
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
R++ ++G A+ A I ++L E IS S + +A RP
Sbjct: 57 RIITLAGPTNAIFKAFAMIIDKLEEG-----ISSSMTNSTAASRP 96
>gi|296209450|ref|XP_002751548.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Callithrix jacchus]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAV 206
N S A +V+ P + E+D+ VV+I+G A
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYAC 546
>gi|355560757|gb|EHH17443.1| hypothetical protein EGK_13854 [Macaca mulatta]
gi|355747773|gb|EHH52270.1| hypothetical protein EGM_12689 [Macaca fascicularis]
Length = 583
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
>gi|410952454|ref|XP_003982895.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Felis catus]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|403287927|ref|XP_003935171.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Saimiri boliviensis boliviensis]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAV 206
N S A +V+ P + E+D+ VV+I+G A
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYAC 546
>gi|301771920|ref|XP_002921378.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
isoform 2 [Ailuropoda melanoleuca]
Length = 582
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 412 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 465
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 466 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 517
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 518 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 571
Query: 226 ISISP 230
+ P
Sbjct: 572 LQSGP 576
>gi|109067156|ref|XP_001098422.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 3 [Macaca mulatta]
gi|402863939|ref|XP_003896249.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Papio anubis]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|322698395|gb|EFY90165.1| KH domain RNA-binding protein [Metarhizium acridum CQMa 102]
Length = 367
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 16/198 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
RR DGE + A+AQ + R IV S++ G +IGK G + +R+ET ++
Sbjct: 27 RRGPDGEPAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKV 85
Query: 89 IARHEERVIIISSKDNDNVVSDA-ENALQQIAALILKDDDSNSEASKVAAG--HVAANTI 145
+ +RV+ I+ + DA A +A +L+ + V + H+++ I
Sbjct: 86 VQGVHDRVLTITGE------CDAISRAYAIVARALLEGAPAMGMGGIVQSNGTHLSSTAI 139
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+LLI+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G
Sbjct: 140 KLLISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPDG 193
Query: 206 VLNALVEIGNQLRENPPR 223
+ A+ EI L ++ R
Sbjct: 194 IQRAVWEICKCLVDDWQR 211
>gi|73976022|ref|XP_863341.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 7 [Canis lupus familiaris]
Length = 580
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 27/197 (13%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ Q + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQAPQTETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEI 213
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G A A + EI
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEI 557
Query: 214 GNQLRENPPRQVISISP 230
Q++++ ++ + P
Sbjct: 558 LTQVKQHQQQKALQSGP 574
>gi|355746831|gb|EHH51445.1| hypothetical protein EGM_10814, partial [Macaca fascicularis]
Length = 542
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
P R + RE G G +A+ D R++VP++ +G GKEG I+ I ++
Sbjct: 108 PPQRPQLGDHSSREQGHAPGGT--SQARQIDFPLRVLVPTQFVGANSGKEGLTIKNITKQ 165
Query: 79 TKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVA 136
T++ + I + E+ V I ++ + + A + I ++ K+ D A ++
Sbjct: 166 TQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP 219
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
A N + G LIG G+N++K+ + +G I I + L S + +R
Sbjct: 220 LKIFAHNGL--------VGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERT 267
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI 237
+ + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 268 ITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSAL 314
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A +R+
Sbjct: 359 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSKRM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|149236405|ref|XP_001524080.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452456|gb|EDK46712.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 399
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K A A + +R++V +++ G +IG+ G I IR ET I+ ER++ +
Sbjct: 115 DDKSNADAL-INYRVLVSAKEAGCLIGQNGGVIDSIRNETNTKAGISRLTPGTHERILTV 173
Query: 100 SSKDNDNVVSDAENALQQIA------ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S K + D+ AL A A+ L + + S IRLLI SQ
Sbjct: 174 SGK-----LDDSAKALSYFAQALCDSAIELYNYFPLKQLSSTPCVEGETTIIRLLIPNSQ 228
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG G I++++ S G +++ ++L L S ++R+V++ G V + ++L I
Sbjct: 229 MGTLIGSKGARIQQIQQSFGVSMI---ASKLFLPGS---NERLVELQGTVDDLYDSLRVI 282
Query: 214 GNQLRENPPRQV 225
L E+ V
Sbjct: 283 SRCLIEDFSSSV 294
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKD 103
+ + + R+++P+ Q+G +IG +G RIQ+I++ ++ IA + ER++ +
Sbjct: 214 EGETTIIRLLIPNSQMGTLIGSKGARIQQIQQSFGVSM-IASKLFLPGSNERLVEL---- 268
Query: 104 NDNVVSDAENALQQIAALILKDDDSN--SEASKVAAGH--VAANTIRLLIAGSQAGCLIG 159
V D ++L+ I+ +++D S+ + V H +T + G LIG
Sbjct: 269 -QGTVDDLYDSLRVISRCLIEDFSSSVGTTTYYVPRSHQMTRKSTATINFPNDMVGALIG 327
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G I+ +R SGA I I A +RV I+G AV A + + L
Sbjct: 328 KNGSRIQGVRKVSGAMIGISE-------AEDGSDERVFTITGTQQAVEKAKGLLYHNLER 380
Query: 220 NPPRQVISISPAYN 233
R+ + S N
Sbjct: 381 EEQRRAEATSAGEN 394
>gi|30795212|ref|NP_006538.2| insulin-like growth factor 2 mRNA-binding protein 3 [Homo sapiens]
gi|114612360|ref|XP_001157593.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 4 [Pan troglodytes]
gi|397472938|ref|XP_003807987.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3 [Pan
paniscus]
gi|254763311|sp|O00425.2|IF2B3_HUMAN RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 3;
Short=IGF2 mRNA-binding protein 3; Short=IMP-3; AltName:
Full=IGF-II mRNA-binding protein 3; AltName: Full=KH
domain-containing protein overexpressed in cancer;
Short=hKOC; AltName: Full=VICKZ family member 3
gi|4191612|gb|AAD09828.1| IGF-II mRNA-binding protein 3 [Homo sapiens]
gi|40807047|gb|AAH65269.1| Insulin-like growth factor 2 mRNA binding protein 3 [Homo sapiens]
gi|51095013|gb|EAL24257.1| IGF-II mRNA-binding protein 3 [Homo sapiens]
gi|119614193|gb|EAW93787.1| insulin-like growth factor 2 mRNA binding protein 3, isoform CRA_b
[Homo sapiens]
gi|261861412|dbj|BAI47228.1| insulin-like growth factor 2 mRNA binding protein 3 [synthetic
construct]
gi|410216456|gb|JAA05447.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410260770|gb|JAA18351.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410287810|gb|JAA22505.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410334615|gb|JAA36254.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
Length = 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|395854336|ref|XP_003799652.1| PREDICTED: RNA-binding protein Nova-2, partial [Otolemur garnettii]
Length = 487
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 27 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 86
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 87 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 146
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 147 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 199
>gi|410982764|ref|XP_003997718.1| PREDICTED: RNA-binding protein Nova-2 [Felis catus]
Length = 372
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII 99
R + + ++++PS G +IGK G I ++++ET ATIK++ D ERV ++
Sbjct: 34 RDGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLV 93
Query: 100 --SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+++ + V S +++I + K + N + A +L++ S AG +
Sbjct: 94 QGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLI 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ + SGA + + +Q P + E RVV +SG+ V A+ I ++
Sbjct: 154 IGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKV 208
Query: 218 RENP 221
+E+P
Sbjct: 209 QEDP 212
>gi|410952456|ref|XP_003982896.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 2 [Felis catus]
Length = 580
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 410 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 463
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 464 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 515
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 516 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 569
Query: 226 ISISP 230
+ P
Sbjct: 570 LQSGP 574
>gi|431908994|gb|ELK12585.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Pteropus
alecto]
Length = 613
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KPKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
>gi|403174064|ref|XP_003333074.2| hypothetical protein PGTG_14860, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375170814|gb|EFP88655.2| hypothetical protein PGTG_14860, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 365
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+DP A +V R +V +++ G +IGK G + +IRE+T ++ A+ +R+
Sbjct: 14 GADP-----ASNVTLRALVSTKEAGVIIGKGGKTVAEIREQTGTKAGVSKAVQGVHDRIF 68
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSE-ASKVAAGHVAANTIRLLIAGSQAGC 156
+S + A +A IL++ + ++ A V IR+L++ + G
Sbjct: 69 SVSGG-----LEGVSKAYAIVAEAILQNPLAATDPALTVPPPTATTTIIRVLVSHNLMGS 123
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG G I++++++SG +V + LP ++RVV++ G A+ A+ EIG
Sbjct: 124 IIGRQGSKIKEIQDTSGVRMV-ASKEMLP-----QSTERVVEVQGAPDAIRVAIHEIGKC 177
Query: 217 LRENPPR 223
L ++ R
Sbjct: 178 LMDDWER 184
>gi|147767494|emb|CAN60206.1| hypothetical protein VITISV_036062 [Vitis vinifera]
Length = 242
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T++LL+ Q GC+IG GQ I+ + + SGA I IL + L CA + D +VQISG+
Sbjct: 83 TVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYILKNDHLLSCALSF--DELVQISGER 140
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSGQPLLQL 255
P + +++ + + SI P YS+ + PTSG P++ L
Sbjct: 141 PLLGRLFIKL-HLFFMIIQHLLASIVPI-GYSS---GGSLIGPTSGAPIMGL 187
>gi|119577801|gb|EAW57397.1| neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 556
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 96 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 155
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 156 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 215
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 216 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 268
>gi|397493518|ref|XP_003817651.1| PREDICTED: RNA-binding protein Nova-2 [Pan paniscus]
Length = 349
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 5 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 64
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 65 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 124
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 125 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 177
>gi|395738667|ref|XP_003780758.1| PREDICTED: LOW QUALITY PROTEIN: insulin-like growth factor 2
mRNA-binding protein 3 [Pongo abelii]
Length = 567
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 178 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 237
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 238 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 283
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 284 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 339
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 340 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 371
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 397 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 450
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 451 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 502
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 503 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 556
Query: 226 ISISP 230
+ P
Sbjct: 557 LQSGP 561
>gi|119614192|gb|EAW93786.1| insulin-like growth factor 2 mRNA binding protein 3, isoform CRA_a
[Homo sapiens]
Length = 422
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 33 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 92
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 93 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 138
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 139 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 194
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 195 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 226
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 253 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 306
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 307 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 358
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQVI 226
S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++ +
Sbjct: 359 LSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKAL 412
Query: 227 SISP 230
P
Sbjct: 413 QSGP 416
>gi|328850348|gb|EGF99514.1| hypothetical protein MELLADRAFT_73383 [Melampsora larici-populina
98AG31]
Length = 383
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+DP +V R +V +++ G +IGK G + +IRE+T ++ A+ +RV+
Sbjct: 30 GADP-----TSNVTLRSLVSTKEAGVIIGKGGKTVAEIREQTGTKAGVSKAVQGVHDRVL 84
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS-KVAAGHVAANTIRLLIAGSQAGC 156
+S + A +A IL++ + ++ S V IR+L++ + G
Sbjct: 85 SVSGG-----LEGVSKAYSIVADAILQNPLAATDPSLTVPPPTATTTAIRVLVSHNLMGS 139
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG G I+++++ SG +V + LP ++RVV++ G A+ A+ EIG
Sbjct: 140 IIGRQGSKIKEIQDISGVRMV-ASKEMLP-----QSTERVVEVQGSPEAIRVAIHEIGKC 193
Query: 217 LRENPPR 223
L E+ R
Sbjct: 194 LMEDWER 200
>gi|281353861|gb|EFB29445.1| hypothetical protein PANDA_010268 [Ailuropoda melanoleuca]
Length = 596
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
>gi|213410260|ref|XP_002175900.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
gi|212003947|gb|EEB09607.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
Length = 381
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + R ++ +R+ G +IGK G + ++R T I A+ +RV+ IS
Sbjct: 84 QQLTLRALLSTREAGIIIGKSGKNVAELRSTTNVKAGITKAVPNVHDRVLTIS------- 136
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
EN ++ +I +++ A+ A +RLLIA S G +IG +G I K
Sbjct: 137 -GSLENVVRAYRFIIDIFAKNSTNANGTPVDPHAPRKLRLLIAHSLMGSIIGRNGLRI-K 194
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
L + +I + + LP ++R V++ G V + A+ EIG L ++ R +
Sbjct: 195 LIQDKCSCRMIASKDMLP-----QSTERTVEVHGTVENLHAAIWEIGKCLIDDWERGAGT 249
Query: 228 ISPAYNYSAIRPAQPF 243
+ YN + R QPF
Sbjct: 250 V--FYNPVS-RLTQPF 262
>gi|301771918|ref|XP_002921377.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
isoform 1 [Ailuropoda melanoleuca]
Length = 579
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 409 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 462
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 463 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 514
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 515 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 568
Query: 226 ISISP 230
+ P
Sbjct: 569 LQSGP 573
>gi|218189965|gb|EEC72392.1| hypothetical protein OsI_05673 [Oryza sativa Indica Group]
gi|222622089|gb|EEE56221.1| hypothetical protein OsJ_05205 [Oryza sativa Japonica Group]
Length = 442
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 94/178 (52%), Gaps = 19/178 (10%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-AIARHEERVIIISSKDNDNV-V 108
+FR++V + ++G +IG+ G I+++ E+T+A +++ + A A R+++IS+ + +
Sbjct: 98 VFRLVVATDKVGGLIGRRGDTIKRLCEDTRARVRVLEAAAAAAANRIVLISATEESQAEL 157
Query: 109 SDAENA-------LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
A +A + I + D S S K +A +LL+ +QA LIG
Sbjct: 158 PPAMDAAIKIFMHINDIEKINCDDTLSGSAPEKCSA--------KLLVPSAQATHLIGKQ 209
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I+ ++ ++GAT+ I+ +++ L + +R+V I G VL+AL + LR+
Sbjct: 210 GVRIKSIQETTGATVKII--DKVELLSYDVVDERIVDIHGAPLKVLHALKSVLGVLRK 265
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
D + GS P++ + +++VPS Q +IGK+G RI+ I+E T AT+KI D +
Sbjct: 180 DDTLSGSAPEKCSA------KLLVPSAQATHLIGKQGVRIKSIQETTGATVKIIDKV 230
>gi|426227471|ref|XP_004007841.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Ovis aries]
Length = 580
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 27/198 (13%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEI 213
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G A A + EI
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEI 557
Query: 214 GNQLRENPPRQVISISPA 231
Q++++ ++ + P+
Sbjct: 558 LTQVKQHQQQKALQSGPS 575
>gi|300796214|ref|NP_001179217.1| insulin-like growth factor 2 mRNA-binding protein 3 [Bos taurus]
gi|296488613|tpg|DAA30726.1| TPA: insulin-like growth factor 2 mRNA binding protein 3 [Bos
taurus]
Length = 580
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 27/198 (13%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEI 213
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G A A + EI
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEI 557
Query: 214 GNQLRENPPRQVISISPA 231
Q++++ ++ + P+
Sbjct: 558 LTQVKQHQQQKALQSGPS 575
>gi|443926268|gb|ELU44971.1| cytoplasmic protein [Rhizoctonia solani AG-1 IA]
Length = 389
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SDP AQ + R ++ ++ +IGK G + +IRE++ A + ++++I + ER++
Sbjct: 59 SDPPAPPAAQ-IHMRCLIVTQDASIIIGKAGKHVNEIREKSGARVMVSESIPGNPERIL- 116
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
NV + + ++ + +D + V A TI+ +I S+ G +I
Sbjct: 117 -------NVSGPLDAVSKSFGLIVRRINDEPFDTPSVPGSR--AVTIKFIIPHSRMGSVI 167
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I++++++SGA + + LP ++R++ +SG A+ A +GN L
Sbjct: 168 GRGGSKIKEIQDASGAKLN-ASEGMLP-----GSTERILSVSGVADAIHIATYYVGNILI 221
Query: 219 ENPPRQVISISPA-YNYSAIRPAQPFVEPT 247
E RQ S S + Y S P PT
Sbjct: 222 EAAERQPHSSSTSTYRPSGTSSRGPRYAPT 251
>gi|384490263|gb|EIE81485.1| hypothetical protein RO3G_06190 [Rhizopus delemar RA 99-880]
Length = 426
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A ++ R +V + G +IGK G + +IR+ + A + I+D + ER++ +
Sbjct: 76 AGNISLRSLVGMKDAGLIIGKGGKNVSEIRDSSMARVNISDIVPGAAERILTVVGP---- 131
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNI 165
VS A +A I+ ++++ +E +K G + + TI++LI ++ G +IG SG I
Sbjct: 132 -VSAVAKAYALVAEKII-EENTLAEDNK---GPIQQDVTIKILILANRMGSIIGKSGSVI 186
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ +SGA + + + PL S ++RVV I G A+ A+ +IG+ L + P
Sbjct: 187 RSIQETSGAKV---SAQEEPLPLS---TERVVTIHGTPDAIEQAVKKIGDILVDQP 236
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
+I +P+ +G +IGK G +I +IR+ + + IKIAD ER+I I+ N
Sbjct: 352 QIYIPNEMVGCIIGKGGMKINEIRQTSGSHIKIADPSTDSHERLITITGTPESN 405
>gi|393247644|gb|EJD55151.1| hypothetical protein AURDEDRAFT_50272, partial [Auricularia
delicata TFB-10046 SS5]
Length = 313
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R +V ++ G +IGK G + IR+ T ++ + ERV+ I+ V
Sbjct: 3 LRALVTTKDAGVIIGKAGKNVADIRDHTGVKAGVSKVVPGVHERVLTITGS-----VDGV 57
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A I +L S+ S A +RLLI+ + G +IG +G I+ ++++
Sbjct: 58 AKAYTLIITQLLSASTSSPTISSPPPTQTA---LRLLISHNLMGSVIGRNGLKIKAIQDA 114
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVISIS 229
SGA +V + + LP ++R+V++ G A+ A+ EIG L E+ R +
Sbjct: 115 SGARMV-ASKDMLP-----QSTERIVEVQGTAEAIGRAIEEIGKCLLEDWERGQGTVLFH 168
Query: 230 PAYNYSAIR------PAQPFVEPT 247
P + R PA F P+
Sbjct: 169 PGHGVDDGRSPSRRSPASTFTSPS 192
>gi|148691147|gb|EDL23094.1| neuro-oncological ventral antigen 2 [Mus musculus]
Length = 411
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 3 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 62
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 63 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 122
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 123 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 175
>gi|335289843|ref|XP_003127279.2| PREDICTED: RNA-binding protein Nova-2 [Sus scrofa]
Length = 492
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 204
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 65 IGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+G++G +++IREE+ A I I++ ER+I ++ N A+ + A+I+
Sbjct: 111 LGRKGTSVKRIREESGARINISEG--NCPERIITLTGPTN---------AIFKAFAMIID 159
Query: 125 --DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
++D NS + A T+RL++ +Q G LIG G I+++R S+GA + + A +
Sbjct: 160 KLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 218
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVISI 228
LP + ++R + I+G +V + +I L ++P +V++I
Sbjct: 219 MLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 263
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 180 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 234
Query: 109 SDAENALQQIAALILK 124
++QI ++L+
Sbjct: 235 QSVTECVKQICLVMLE 250
>gi|340522569|gb|EGR52802.1| predicted protein [Trichoderma reesei QM6a]
Length = 369
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 31 DGELAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 89
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLL 148
+RV+ I+ DA + I A L + A V G V N I+LL
Sbjct: 90 HDRVLTITGG------CDAISRAYAIVARALLEG-----APVVGMGGVVQNNGTHPIKLL 138
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V + LP ++R+V++ G +
Sbjct: 139 ISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKDMLP-----QSTERIVEVQGTPEGIQR 192
Query: 209 ALVEIGNQLRENPPR 223
A+ EI L ++ R
Sbjct: 193 AIWEISKCLVDDWQR 207
>gi|406697218|gb|EKD00483.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 8904]
Length = 793
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
AQ + R ++ ++ +IG+ G + +IRE++ A + I+++I + ER++ N
Sbjct: 85 AQQISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERIL--------N 136
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + + V A TI+ +I S+ G +IG G I+
Sbjct: 137 VFGALDAVSKAFGLIVRRINDEPFDVASVPGSR--AVTIKFIIPNSRMGSVIGRGGSKIK 194
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+++++SGA L +++ L S ++R++ +SG A+ A+ IG L E
Sbjct: 195 EIQDASGAR---LNASEVMLPGS---TERILSVSGVADAIHIAVYYIGTILLE 241
>gi|440901500|gb|ELR52431.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Bos grunniens
mutus]
Length = 600
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 383
>gi|358398587|gb|EHK47938.1| hypothetical protein TRIATDRAFT_47313 [Trichoderma atroviride IMI
206040]
Length = 369
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 30 DGELAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 88
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+RV+ I+ DA + I A L + + G+ + I+LLI+ +
Sbjct: 89 HDRVLTITGG------CDAISRAYAIVARALLEGAPAVGMGGIVQGN-GTHPIKLLISHN 141
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q G +IG G I+ ++++SG +V LP ++RVV++ G + A+ E
Sbjct: 142 QMGTIIGRQGLKIKHIQDTSGVRMV-AQKEMLP-----QSTERVVEVQGTPEGIQRAIWE 195
Query: 213 IGNQLRENPPRQVISISPAYN 233
I L ++ R ++ YN
Sbjct: 196 ISKCLVDDWQRGTGTV--LYN 214
>gi|256079872|ref|XP_002576208.1| rna-binding protein related [Schistosoma mansoni]
gi|353231011|emb|CCD77429.1| rna-binding protein related [Schistosoma mansoni]
Length = 666
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 25/197 (12%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH---EERVIIISSKDND 105
+V F+I+VPS G +IGK G I +I+ +T A +K++ A A + ERV +I
Sbjct: 42 NVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGTTERVCLIV----- 96
Query: 106 NVVSDAENALQQIAALILKDDDS----NSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ Q I+ I + +S E + H +++L+ S AG +IG
Sbjct: 97 GTIESILRVFQYISEKIYEKPESVPKTGCEGRVLTERH---KQVKILVPNSTAGMIIGKG 153
Query: 162 GQNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I++L++++G I V +L L ++R V ++G++ +A+ I +++ E+
Sbjct: 154 GSFIKELKDTTGVFIQVSQKSKELNL------AERCVTVAGELSQTRDAIALILSKIAED 207
Query: 221 PPRQVISISPAYNYSAI 237
P S P +YS I
Sbjct: 208 PQS---SSCPNISYSEI 221
>gi|401880798|gb|EJT45110.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 2479]
Length = 793
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
AQ + R ++ ++ +IG+ G + +IRE++ A + I+++I + ER++ N
Sbjct: 85 AQQISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERIL--------N 136
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + + V A TI+ +I S+ G +IG G I+
Sbjct: 137 VFGALDAVSKAFGLIVRRINDEPFDVASVPGSR--AVTIKFIIPNSRMGSVIGRGGSKIK 194
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+++++SGA L +++ L S ++R++ +SG A+ A+ IG L E
Sbjct: 195 EIQDASGAR---LNASEVMLPGS---TERILSVSGVADAIHIAVYYIGTILLE 241
>gi|225000564|gb|AAI72604.1| Neuro-oncological ventral antigen 2 [synthetic construct]
Length = 583
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKDND 105
++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++ +
Sbjct: 125 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALN 184
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
V S +++I + K + N + A +L++ S AG +IG G +
Sbjct: 185 AVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATV 244
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 245 KAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 295
>gi|449667206|ref|XP_002160219.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Hydra
magnipapillata]
Length = 393
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D G K R + V R ++ S+ G +IGK G I+++R E AT+ + D
Sbjct: 7 KRMNNDSGSGGGAKKMRGDS--VTLRFLLMSKHAGGIIGKGGQTIKRLRSEYSATVNVPD 64
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHVAANTIR 146
+ ERV+ I++ ENA++ + L L + + + +
Sbjct: 65 --SNSSERVLSIAASQ--------ENAIKILCECLPLFHEPPYQVSGGGSQNQKNEFEVD 114
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L+ SQ G +IG SG I++LR + A + + LP + ++RVV + G +
Sbjct: 115 FLVHSSQVGGIIGRSGFKIKELREQTNANVKVFQE-CLP-----NSTERVVALGGGEAEI 168
Query: 207 LNALVEIGNQLRENPPRQVISI 228
++AL +I ++E+P + I++
Sbjct: 169 VDALKKILEIMQESPIKGNIAL 190
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++ +P+ G +IG+ G RI+ IR+ + A IKI D +RVI I+
Sbjct: 318 QVTIPNDLAGAIIGRGGERIRNIRQRSGADIKIQDPGEGKNDRVITIT 365
>gi|45198501|ref|NP_985530.1| AFL018Cp [Ashbya gossypii ATCC 10895]
gi|44984452|gb|AAS53354.1| AFL018Cp [Ashbya gossypii ATCC 10895]
gi|374108759|gb|AEY97665.1| FAFL018Cp [Ashbya gossypii FDAG1]
Length = 392
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 32/225 (14%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVL-----------FRIIVPSRQIGKVIGKEGHRIQKIR 76
KR+ +D E +R DVL R++ + V+G +G RI +I+
Sbjct: 15 KRKPDDDEKALEAEIKRVALDDVLPGAARISDYIHMRMLCLVKDASMVVGHKGERISRIK 74
Query: 77 EETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVA 136
ET I +++ I ERV+ + + A +I+ I +DD S +
Sbjct: 75 LETGTRINVSENIKNVPERVVFLRGS-----CENVAKAFGKISRAINDEDDRESNDRSLP 129
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
T+ LL+ G +IG G + ++ + S A +V P QLPL +DRV
Sbjct: 130 L------TVNLLVPHHLMGYVIGKQGSRLREIEDLSAARLV-AGPQQLPL-----SNDRV 177
Query: 197 VQISGDVPAVLNALVEIGNQLRENPP----RQVISISPAYNYSAI 237
+ I+G A+ A +G + P R+ I P+ +S +
Sbjct: 178 LCITGVADAIHIATYYVGQTILSCEPKYRARKTIFYQPSAMHSVL 222
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+EG +P+ R + V+ I + +G VIG+ G I +I+E T +I+IAD + +ER
Sbjct: 292 VEGINPQTRITS--VVQEIFIEELMVGNVIGRGGKNITQIKESTGCSIQIADPVPGKDER 349
Query: 96 VIII 99
+ I
Sbjct: 350 KLTI 353
>gi|326378247|gb|ADZ57223.1| neuro-oncological ventral antigen [Branchiostoma lanceolatum]
Length = 508
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 25/203 (12%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + G+ EDG++ L ++++PS G +IGK G I ++++ET A
Sbjct: 52 RSNFGGEGGPEDGQL--------------LLKVLIPSYAAGSIIGKGGQTIVQLQKETGA 97
Query: 82 TIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
TIK++ D ER+++I+ + D++ S + +++I S SE + A
Sbjct: 98 TIKLSKSNDFYPGTTERIVVITGSE-DSLKSVHKFLMEKIGQAPRPPAKSPSEQN---AN 153
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+ A +++++ S AG +IG G I+ + +G+ + I + + +RV+
Sbjct: 154 NNRAKQVKIVVPNSTAGLIIGKGGATIKFIMEQTGSRVQI----SQKATSGINLPERVIT 209
Query: 199 ISGDVPAVLNALVEIGNQLRENP 221
I+G+ A I N++ E+P
Sbjct: 210 ITGEPEQNDKACAFIVNKIVEDP 232
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK +++IREE+ A I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKNEESVKRIREESGARFSISEG--NCPERIITLTGPTCA---- 67
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ A +I K ++D NS + A T+RL++ +Q G LIG G I+++
Sbjct: 68 ----IFKAFAMMINKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 169 RNSSGATIVI---LAPN 182
R S+GA + + + PN
Sbjct: 124 RESTGAQVQVSGDMLPN 140
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A ++++ D + E+ I ++ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVSGDMLPNSTEQAITVAV-----VP 152
Query: 109 SDAENALQQIAALILK 124
+QQI ++L+
Sbjct: 153 QSVTECVQQICLVMLE 168
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG + ++++++R SGA I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKNEESVKRIREESGARFSI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLREN 220
A+ A + N+L E+
Sbjct: 66 CAIFKAFAMMINKLEED 82
>gi|353237678|emb|CCA69645.1| related to PBP2-PAB1 binding protein [Piriformospora indica DSM
11827]
Length = 406
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E+G+ S+ A + R ++ ++ +IGK G + +IRE++ A + ++++I
Sbjct: 89 ENGQKSSSNAATAPPASTIHMRCLIVTQDASIIIGKGGSHVNEIREKSNAKVMVSESIPG 148
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ ER++ VS A +A+ + LI++ + V A TI+ +I
Sbjct: 149 NPERIL---------NVSGALDAVSKAFGLIVRRINDEPMGPSVPGSR--AVTIKFIIPH 197
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
S+ G +IG G I++++ +SGA + + LP ++R++ ++G A+ A
Sbjct: 198 SRMGSVIGKGGAKIKEIQEASGARLN-ASEGMLP-----GSTERILSVTGVADAIHIATY 251
Query: 212 EIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSG 249
IGN L + +Q + +Y RP + F E G
Sbjct: 252 YIGNILIQ---QQEAHGAVGLSYRQSRPPRAFNETMGG 286
>gi|395751404|ref|XP_003780598.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein Nova-2 [Pongo
abelii]
Length = 681
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH---EERVIII--SSKD 103
+ + ++PS G +IGK G I ++++ET ATIK + H ERV ++ +++
Sbjct: 132 EYFLKELIPSYAAGSIIGKGGQTIVQLQKETGATIKXXXXVPWHTGTTERVCLVQGTAEA 191
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 192 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 251
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 252 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 304
>gi|440907529|gb|ELR57670.1| RNA-binding protein Nova-2, partial [Bos grunniens mutus]
Length = 298
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 4 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 63
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 64 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 123
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 124 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 176
>gi|121710626|ref|XP_001272929.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
gi|119401079|gb|EAW11503.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
Length = 362
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G+++ + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 25 DEGDMDITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 84
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 85 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 133
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 134 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 187
Query: 207 LNALVEIGNQLRENPPRQVISISPAYN 233
A+ EIG L ++ R +I YN
Sbjct: 188 EKAVWEIGKCLIDDWQRGTGTI--LYN 212
>gi|348564372|ref|XP_003467979.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Cavia porcellus]
Length = 741
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 353 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 412
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 413 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 458
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 459 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 514
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 515 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 546
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 24/157 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 572 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 625
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A H+ + AG +IG G+ + +L+N
Sbjct: 626 FKAQGRIYGKIKEENFVSPKEEVKLEA-HIRVPSF-------AAGRVIGKGGKTVNELQN 677
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAV 206
S A +V+ P + E+D+ VV+I+G A
Sbjct: 678 LSSAEVVV------PRDQTPDENDQVVVKITGHFYAC 708
>gi|432101641|gb|ELK29690.1| RNA-binding protein Nova-2 [Myotis davidii]
Length = 294
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 10/192 (5%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII 99
R A+ + ++++PS G +IGK G I ++++ET ATIK++ D ERV ++
Sbjct: 34 RNAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLV 93
Query: 100 --SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+++ + V S +++I + K + N + A +L++ S AG +
Sbjct: 94 QGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLI 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ + SGA + + +Q P + E RVV +SG+ V A+ I +L
Sbjct: 154 IGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKL 208
Query: 218 RENPPRQVISIS 229
++++ I+
Sbjct: 209 AAESAKELVEIA 220
>gi|4235140|gb|AAD13116.1| RNA-binding protein Nova-2 [AA 29-492] [Homo sapiens]
Length = 464
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 4 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 63
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 64 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 123
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 124 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 176
>gi|402593291|gb|EJW87218.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 359
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 32/235 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
SGKR+R D E A R++V SR G +IGK G I+++R E A + +
Sbjct: 21 SGKRQRPDSYQEA------LAAGKYELRLLVSSRGAGGIIGKGGENIKRLRSEYDANVTV 74
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ + ER+ I V+ EN L + +I K DD ++ + + +
Sbjct: 75 PDS--QTPERIATI--------VATVENVLSIVTEIIPKLDDRTLQSREGDSNRPIE--L 122
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L+ S AG +IG G I++++ G + + A Q P ++RVV I G
Sbjct: 123 RVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCP----PQSTERVVSIKGAPDK 176
Query: 206 VLNALVEIGNQLRENP------PRQVISISPAYN--YSAIRPAQPFVEPTSGQPL 252
+L + I N L+E P P + + P+Y+ Y P + + P P+
Sbjct: 177 ILACVNHIMNMLKEIPIKGVTKPYESMFYDPSYSSEYGGYPPDRNYRGPMIRGPM 231
>gi|344270303|ref|XP_003406985.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Loxodonta africana]
Length = 492
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 103 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 162
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 163 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 208
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 209 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 264
Query: 222 PRQVISIS------PAYNYSAIRPAQPFVEPTSGQP 251
+ S++ P N +A+ PTSG P
Sbjct: 265 ENDIASMNLQAHLIPGLNLNALG----LFPPTSGMP 296
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 27/185 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDA 111
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A
Sbjct: 322 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEA 375
Query: 112 ENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ Q +K+++ S E K+ A + + AG +IG G+ + +L+
Sbjct: 376 QFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQ 427
Query: 170 NSSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQV 225
N S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++
Sbjct: 428 NLSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQQKA 481
Query: 226 ISISP 230
+ P
Sbjct: 482 LQSGP 486
>gi|403417714|emb|CCM04414.1| predicted protein [Fibroporia radiculosa]
Length = 420
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 26/199 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++
Sbjct: 115 APAANIHMRCLIVTQDASIIIGKGGSHVNEIREKSSARVMVSESIPGNPERIL------- 167
Query: 105 DNVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
VS +A+ + LI++ +D+ + S + V TI+ +I S+ G +IG G
Sbjct: 168 --NVSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSRAV---TIKFMIPNSRMGSVIGKGG 222
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++++SGA + + LP ++RV+ +SG A+ A IGN L E
Sbjct: 223 AKIKEIQDASGARLN-ASEGMLP-----GSTERVLSVSGVADAIHIATYYIGNILIEANE 276
Query: 223 RQVISISPAYNYSA-IRPA 240
R P+YN S+ RP+
Sbjct: 277 RL-----PSYNNSSYYRPS 290
>gi|392337608|ref|XP_001075246.3| PREDICTED: RNA-binding protein Nova-2 [Rattus norvegicus]
Length = 560
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 117 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 176
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ S +++I + K + N + A +L++ S AG +IG G
Sbjct: 177 LNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 236
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 237 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 289
>gi|321468687|gb|EFX79671.1| hypothetical protein DAPPUDRAFT_225024 [Daphnia pulex]
Length = 573
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 21 PRHDVSGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
P H S ++R DG+ + SD K+ D + +++VPS G +IGK G I ++++E
Sbjct: 27 PEH--SERKRPLDGDSDLSDRKKSHFTGDGSIYLKVLVPSVAAGAIIGKGGETIAQVQKE 84
Query: 79 TKATIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
A IK++ D ERV +I ++V+S L I I D N++ +
Sbjct: 85 VNARIKMSKANDFYPGTTERVCLIKGT-TESVMS----MLTFICEKIRDKPDPNAKPAMD 139
Query: 136 AAGHVAA---NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
A +++L+ S AG +IG G I++++ SGA I I
Sbjct: 140 FDSKTPAERDKQVKILVPNSTAGMIIGKGGSFIKQIKEESGAYIQI 185
>gi|71019141|ref|XP_759801.1| hypothetical protein UM03654.1 [Ustilago maydis 521]
gi|46099599|gb|EAK84832.1| hypothetical protein UM03654.1 [Ustilago maydis 521]
Length = 442
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
D IEG+ A Q R +V +++ G +IGK G + ++RE+T ++ +
Sbjct: 38 DENIEGATIDPNATLQ---LRALVSTKEAGIIIGKGGANVAELREQTGVKAGVSKVVPGV 94
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKD--------DDSNSEASKVAAGHVAANT 144
+RV+ ++ + +A IA IL++ D S +EA+ +
Sbjct: 95 HDRVLSVTG-----TLVGISDAFALIAKTILENPLNAPVQADGSPAEAA------AQTTS 143
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ + G +IG G I+ +++ SGA +V + LP ++RVV++ G V
Sbjct: 144 VRLLISHNLMGTVIGRQGLKIKHIQDLSGARMVA-SKEMLP-----QSTERVVEVQGSVD 197
Query: 205 AVLNALVEIGNQLRENPPR 223
A+ A+ EI L E+ R
Sbjct: 198 AIRVAIHEIAKCLAEDWDR 216
>gi|392344006|ref|XP_002728759.2| PREDICTED: RNA-binding protein Nova-2 [Rattus norvegicus]
Length = 576
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 6 EITVNPTVSVVTEPEPRHD---VSGKRRREDGEIEGSDPKR----RAKAQDVLFRIIVPS 58
E++V PT ++T D ++ RE G G P++ + + ++++PS
Sbjct: 68 EVSVPPTSGLLTSDWVEWDQEKLALGCDREKGV--GVTPEKLGVTHGEEGEYFLKVLIPS 125
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKDNDNVVSDAEN 113
G +IGK G I ++++ET ATIK++ D ERV ++ +++ + S
Sbjct: 126 YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAHSFIAE 185
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
+++I + K + N + A +L++ S AG +IG G ++ + SG
Sbjct: 186 KVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSG 245
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
A + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 246 AWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP 288
>gi|242020720|ref|XP_002430800.1| predicted protein [Pediculus humanus corporis]
gi|212515997|gb|EEB18062.1| predicted protein [Pediculus humanus corporis]
Length = 515
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 95/192 (49%), Gaps = 21/192 (10%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVII 98
P A+ D RI+V S +G +IG++G I++I ++T+A + + D + E+ + I
Sbjct: 105 PAASARQTDFPLRILVQSDMVGAIIGRQGTTIRQITQQTRARVDVHRKDNVGSLEKAITI 164
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+ DN NA ++I ++ +EAS G + ++++L + G +I
Sbjct: 165 YGNPDN------CTNACKKILEVM------QAEASNTNKGEI---SLKILAHNNLIGRII 209
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+++ + + I + + N + ++ +R++ + G + + A EI +LR
Sbjct: 210 GKGGNTIKRIMQDTDSKITVSSINDI----NSFNLERIITVKGTIDNMSRAESEISAKLR 265
Query: 219 ENPPRQVISISP 230
++ + +++P
Sbjct: 266 QSYENDLQAMAP 277
>gi|443924046|gb|ELU43123.1| cytoplasmic protein [Rhizoctonia solani AG-1 IA]
Length = 386
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 31/238 (13%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DG + + P + + R +V +++ G +IGK G + +RE+T ++ +
Sbjct: 29 DGTAQNNGPD----SDTLTLRALVTTKEAGVIIGKGGKNVADLREQTGVKAGVSKVVQGV 84
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALI---------LKDDDSNSEASKVAAGHVAAN 143
ERV+ +S D V+ A +L + A L L +S +
Sbjct: 85 NERVLSVSGTVED--VAKARYSLHRPAILHFAYTLIITQLLQSAPSSPGAPPPPPSSTHT 142
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
++RLLI+ + G +IG G I+ ++++SGA +V + LP ++RVV++ G
Sbjct: 143 SLRLLISHNLMGTIIGRGGLKIKAIQDNSGARMVA-SKEMLP-----QSTERVVEVQGSS 196
Query: 204 PAVLNALVEIGNQLRENPPRQVISI----------SPAYNYSAIRPAQPFVEPTSGQP 251
++ A+ EIG L E+ R + ++ P A R + F TS P
Sbjct: 197 ESIGRAIAEIGRCLLEDWERGLGTVLYHPGPGTGADPLGGTGARRNSGAFAPSTSTTP 254
>gi|398397391|ref|XP_003852153.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
gi|339472034|gb|EGP87129.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
Length = 362
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +R++T ++ + +RV+ ++
Sbjct: 37 AQAQ-LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT---- 91
Query: 105 DNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHVAA--NT--IRLLIAGSQAGCLIG 159
AL IA A L D A ++ G V NT IRLLI+ +Q G +IG
Sbjct: 92 --------GALTGIADAYGLVADSLVKGAPQMGMGGVVGSPNTHPIRLLISHNQMGTIIG 143
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I++++++SG +V LP ++R+V++ G + ++ EIG L +
Sbjct: 144 RQGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIQKSVWEIGKCLID 197
Query: 220 NPPRQVISI--SPA 231
+ R ++ SPA
Sbjct: 198 DEQRGYGTVLYSPA 211
>gi|349802451|gb|AEQ16698.1| putative poly(rC)-binding protein 2 isoform g [Pipa carvalhoi]
Length = 207
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ +
Sbjct: 16 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSII- 74
Query: 109 SDAENALQQIAALILKDDDSN---------SEASKVAAGHVAANTIR------------- 146
++QI ++L+ S + + AG A TI+
Sbjct: 75 ----ECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG--GAYTIQGQAIPQPIDASAQ 128
Query: 147 -----LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
L I GC+IG G I ++R SGA I I P + +DR V I+G
Sbjct: 129 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-------GSTDRQVTITG 181
Query: 202 DVPAV 206
++
Sbjct: 182 STASI 186
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 125 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 180
>gi|50292201|ref|XP_448533.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527845|emb|CAG61494.1| unnamed protein product [Candida glabrata]
Length = 460
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK ++QD+ R++ +Q ++G +G I K++E+T I ++ I ERVI
Sbjct: 71 DPKTNIQSQDISLRMLCLVKQASIIVGPKGESINKLKEQTSTKINVSPNIRGVPERVI-- 128
Query: 100 SSKDNDNVVSDAEN---ALQQIAALILKDDDSN--SEASKVAAGHVAANT---------I 145
+V EN A +IA +I++ D N +++S + N+ +
Sbjct: 129 ------HVKGSCENVGKAFGKIARIIIEKDSKNNANQSSSSLDSEASQNSSDAEDTTLIL 182
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
LLI+ + G +IG G + ++ S A + +PNQL + +DR++ I+G
Sbjct: 183 NLLISHALMGSVIGKGGSQLREIEERSAAKLY-ASPNQLMMS-----NDRILSITG 232
>gi|351695057|gb|EHA97975.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
Length = 445
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 21/187 (11%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
GKR ED E E + KR DV RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQA-FKRSRNTDDVFELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
Query: 86 ADAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASK 134
D+ E ++ IS+ ++ E LQ + L L+ D K
Sbjct: 79 PDSSG--PECILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYK 136
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
G +RLLI S AG +IG+ G I++ R ++ TI + H +D
Sbjct: 137 HYKGSDFDCDLRLLIHQSLAGGIIGVKGVKIKEFRENTQTTIKLFQE------CCPHSTD 190
Query: 195 RVVQISG 201
RVV I G
Sbjct: 191 RVVLIGG 197
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNV 107
D R+++ G +IG +G +I++ RE T+ TIK+ H +RV++I K +D V
Sbjct: 144 DCDLRLLIHQSLAGGIIGVKGVKIKEFRENTQTTIKLFQECCPHSTDRVVLIGGK-SDRV 202
Query: 108 VSDAENALQQIAALILK 124
V + L I+ ++K
Sbjct: 203 VECTKIILDLISESLVK 219
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK +I++IR E+ +IKI + + E+R+I I+ + N
Sbjct: 372 QVTIPKDLAGSIIGKGAQQIKQIRHESGVSIKIDEPLEGSEDRIITITGTQDQIQNAQYL 431
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 432 LQNSVKQYA 440
>gi|345320258|ref|XP_001518426.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein
1-like, partial [Ornithorhynchus anatinus]
Length = 464
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-----ERVII 98
+ +A DV R++VP++ +G +IGKEG I+ I ++T++ I + R E E+ I
Sbjct: 243 KQQAADVPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKID----VHRKENSGAAEKAIS 298
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I S +A + I ++ K+ A +V +++L + G LI
Sbjct: 299 IQSSPG-----GCSSACRMILEIMHKEAKDTKTADEVP--------LKVLAHNNFVGRLI 345
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+N++K+ + I I + L L + +R + + G + A EI ++R
Sbjct: 346 GKEGRNLKKVEQDTDTKITISSLQDLTL----YNPERTITVKGSIENCSRAEQEIMKKVR 401
Query: 219 ENPPRQVISISP 230
E V ++SP
Sbjct: 402 EAYENDVAAMSP 413
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
EI + K A +V +++ + +G++IGKEG ++K+ ++T I I+ D
Sbjct: 315 EIMHKEAKDTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISSLQDLTLY 374
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ ER I + + + A Q+I +K E A +++ I
Sbjct: 375 NPERTITVKGS-----IENCSRAEQEI----MKKVREAYENDVAAMSPPEQEMVQVFIPA 425
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVI 178
G +IG GQ+I++L + A+I +
Sbjct: 426 QAVGAIIGKKGQHIKQLSRFASASIKV 452
>gi|154295229|ref|XP_001548051.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347829292|emb|CCD44989.1| similar to KH domain RNA-binding protein [Botryotinia fuckeliana]
Length = 371
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R IV S++ G +IGK G + +R+ET ++ + +RV+ IS
Sbjct: 50 LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTISGG-----CD 104
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQNI 165
A +A +L+ A ++ G V +N I+LLI+ +Q G +IG G I
Sbjct: 105 SISRAYSIVAKALLEG------APQMGMGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKI 158
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++++SG +V LP ++R+V++ G+ + A+ EI L ++ R
Sbjct: 159 KHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGNPEGIQKAIWEICKCLVDDWAR 210
>gi|340959534|gb|EGS20715.1| hypothetical protein CTHT_0025510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 373
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 18/202 (8%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE + A+ Q + R +V S++ G +IGK G + +REET ++ +
Sbjct: 35 DGEPAPKTDEEYAQTQ-LTLRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGV 93
Query: 93 EERVIIISSKDNDNVVSDA-ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+RV+ I+ DA A +A +L+ + S V H + I+LLI+
Sbjct: 94 YDRVLTITGG------CDAVSRAYAVVARALLEGAPAVSMGGVVQ--HNGTHPIKLLISH 145
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+Q G +IG GQ I+ +++ SG +V LP ++R+V++ G + A+
Sbjct: 146 NQMGTIIGRQGQRIKYIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIQRAVW 199
Query: 212 EIGNQLRENPPRQVISISPAYN 233
EI L ++ R ++ YN
Sbjct: 200 EICKCLVDDWQRGTGTV--FYN 219
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R L++ +AG +IG GQN+ LR +G + Q DRV+ I+G
Sbjct: 52 TLRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGVY-------DRVLTITGGC 104
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AV A + L E P +S+ ++ P
Sbjct: 105 DAVSRAYAVVARALLEGAP--AVSMGGVVQHNGTHP 138
>gi|328702094|ref|XP_003241800.1| PREDICTED: hypothetical protein LOC100161431 isoform 2
[Acyrthosiphon pisum]
gi|328702096|ref|XP_001944651.2| PREDICTED: hypothetical protein LOC100161431 isoform 1
[Acyrthosiphon pisum]
Length = 657
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 25 VSGKRRREDGEIEGSDPKRR-----AKAQDVLF--RIIVPSRQIGKVIGKEGHRIQKIRE 77
V ++R ++G++ KR A D ++ +I++P G +IGK G I +++
Sbjct: 164 VENRKRPLQDTLDGTNVKRTHSSSVAGNSDGMYHMKILIPCITAGAIIGKGGETIAQLQT 223
Query: 78 ETKATIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
ET IK++ D ERV IIS ++++++ +++I K D SN +
Sbjct: 224 ETNTKIKMSKTNDFYPGTTERVCIISGSSSEHIMAALTFIMERIRE---KPDASNRVQNS 280
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
A +++LI S AG +IG +G I++L+ SG + I + +
Sbjct: 281 GDAIADREKQVKILIPNSTAGMIIGKAGAYIKQLKEDSGCFVQISQKAK-----DTTLQE 335
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENP 221
R + +SG+ + I N++ E+P
Sbjct: 336 RCITVSGNTEGNKKVCLCILNKIIEDP 362
>gi|388854780|emb|CCF51673.1| related to PBP2-PAB1 binding protein [Ustilago hordei]
Length = 446
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 22/197 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 136 QATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL-------- 187
Query: 106 NVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
VS +A+ + LI++ +D+ + S + V TIR ++ S+ G +IG G
Sbjct: 188 -TVSGPLDAVSKAFGLIVRRINDEPFDQPSVPGSKSV---TIRFIVPNSRMGSVIGKQGS 243
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++++ +SGA L + L S ++RV+ ISG AV A+ +G L E+ R
Sbjct: 244 KIKEIQEASGAR---LTAGEAMLPGS---TERVLSISGVADAVHIAVYYVGTILLEHQDR 297
Query: 224 QVISISPAYNYSAIRPA 240
++ AY +A P+
Sbjct: 298 NANNL--AYRPTAGGPS 312
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 57/223 (25%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 220 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 275
Query: 106 NVVSDAEN-ALQQIAALIL--KDDDSNSEASKVAAGHVA--------------------- 141
V+DA + A+ + ++L +D ++N+ A + AG +
Sbjct: 276 --VADAVHIAVYYVGTILLEHQDRNANNLAYRPTAGGPSTRPPAPANPYAAAQQPFGYGA 333
Query: 142 -------------------------ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+ T ++ I GC+IG G I ++R+ S + I
Sbjct: 334 HAPPFAGAAAPAVGAGAGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASQI 393
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
I+ P + A ++R+V I+G P + A+ + +L +
Sbjct: 394 KIMEPGAG-IAAGGGGNERLVTITGPPPNIQMAVSLLYQRLEQ 435
>gi|238836386|gb|ACR61401.1| IGF-II mRNA-binding protein 2a variant B [Danio rerio]
Length = 542
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 19 PEPRHDVSGKRRREDGE---IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 164 PATRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ + I S+ + A I ++ K+
Sbjct: 224 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG------CSTACHMIMDIMQKEAVDTKVTE 277
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ +++L S G LIG G+N++K+ + I I + L + +
Sbjct: 278 DIP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNP 325
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G + A A VEI +LRE
Sbjct: 326 ERTIIVKGSIEACCRAEVEIMKKLRE 351
>gi|336376793|gb|EGO05128.1| hypothetical protein SERLA73DRAFT_174106 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389739|gb|EGO30882.1| hypothetical protein SERLADRAFT_455154 [Serpula lacrymans var.
lacrymans S7.9]
Length = 335
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R +V +++ G +IGK G + +RE+T ++ I ERV+ IS V
Sbjct: 32 LRALVSTKEAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVLAISGS-----VEAV 86
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A I + ++ S + + H IRLLI+ + G +IG SG I+ +++
Sbjct: 87 AKAYTIITSQLVTSSSSLVSSPPPSLSH---TVIRLLISHNLMGTIIGRSGLKIKAIQDV 143
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
SGA +V + + LP ++R+V++ G A+ A+ EIG L E+ R
Sbjct: 144 SGARMVA-SKDMLP-----QSTERIVEVQGTPEAIGRAIEEIGRCLLEDWER 189
>gi|119195161|ref|XP_001248184.1| hypothetical protein CIMG_01955 [Coccidioides immitis RS]
gi|303310665|ref|XP_003065344.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105006|gb|EER23199.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|392862573|gb|EAS36772.2| KH domain RNA-binding protein [Coccidioides immitis RS]
Length = 366
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV +++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G + N +RLLI+ +Q G +IG +
Sbjct: 101 --LQGTAKAYGMVAKSLLEG------APQMGMGGIIQNNGTHPVRLLISHNQMGTIIGRN 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKCIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAVWEIGKCLIDDW 206
Query: 222 PRQVISI--SPAY--NYSAIRPAQPFVEPT----SGQPL 252
R ++ +PA N FV P SG+P
Sbjct: 207 QRGTGTVLYNPAVRANVGGASMNSAFVGPNPNTYSGRPY 245
>gi|167614344|gb|ABZ89744.1| IGF-II mRNA-binding protein 2a [Danio rerio]
Length = 607
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 19 PEPRHDVSGKRRREDGE---IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 164 PATRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ + I S+ + A I ++ K+
Sbjct: 224 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG------CSTACHMIMDIMQKEAVDTKVTE 277
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ +++L S G LIG G+N++K+ + I I + L + +
Sbjct: 278 DIP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNP 325
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G + A A VEI +LRE
Sbjct: 326 ERTIIVKGSIEACCRAEVEIMKKLRE 351
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSK 102
+A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + +R++II+
Sbjct: 430 QAPEQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP 488
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+A+ Q LK+++ + +V + + S AG +IG G
Sbjct: 489 ------PEAQFKAQGRIFGKLKEENFFTAKEEVKL------ETHIKVPSSAAGRVIGKGG 536
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPA 205
+ + +L+N + A +++ P + E+D V V+ISG A
Sbjct: 537 KTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFA 574
>gi|392571215|gb|EIW64387.1| cytoplasmic protein [Trametes versicolor FP-101664 SS1]
Length = 325
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
+ + R +V ++ G +IGK G + ++R++T ++ I ERV+ ++
Sbjct: 25 SDSLTLRALVSTKDAGVIIGKAGKNVAELRDQTGVKAGVSKVIPGVHERVLTVT-----G 79
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V A I + ++ S+ S ++ A IRLLI+ + G +IG +G I+
Sbjct: 80 TVEGVAKAYSLIVSQLVSASPSSPTMSPTSSPTTA---IRLLISHNLMGSVIGRNGLKIK 136
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++SSGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R V
Sbjct: 137 AIQDSSGARMV-ASKDMLP-----QSTERIVEVQGSSESIGRAIEEIGRCLLEDWERGVG 190
Query: 227 SI 228
++
Sbjct: 191 TV 192
>gi|238836390|gb|ACR61403.1| IGF-II mRNA-binding protein 2a variant D [Danio rerio]
Length = 388
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 19 PEPRHDVSGKRRREDGE---IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 10 PATRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 69
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ + I S+ + A I ++ K+
Sbjct: 70 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG------CSTACHMIMDIMQKEAVDTKVTE 123
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ +++L S G LIG G+N++K+ + I I + L + +
Sbjct: 124 DIP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNP 171
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G + A A VEI +LRE
Sbjct: 172 ERTIIVKGSIEACCRAEVEIMKKLRE 197
>gi|354490712|ref|XP_003507500.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Cricetulus griseus]
Length = 731
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 342 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKPITILST 401
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A A + I ++ K+ +V +++L + G LIG
Sbjct: 402 PEG------ASAACKSILEIMHKEAQDTKLTEEVP--------LKILAHNNFVGRLIGKE 447
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 448 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCARAEEEIMKKIRESY 503
Query: 222 PRQVISIS------PAYNYSAI 237
+ S++ P N +A+
Sbjct: 504 ENDIASMNLQAHLIPGLNLNAL 525
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 562 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 615
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 616 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 667
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQVI 226
S A +V+ P + E+++ VV+I+G A A + EI +Q++++ ++ +
Sbjct: 668 LSSAEVVV------PRDQTPDENNQVVVKITGHFYACQVAQRKIQEILSQVKQHQQQKAL 721
Query: 227 SISP 230
P
Sbjct: 722 QSGP 725
>gi|320034805|gb|EFW16748.1| KH domain RNA-binding protein [Coccidioides posadasii str.
Silveira]
Length = 345
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV +++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G + N +RLLI+ +Q G +IG +
Sbjct: 101 --LQGTAKAYGMVAKSLLEG------APQMGMGGIIQNNGTHPVRLLISHNQMGTIIGRN 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKCIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGIEKAVWEIGKCLIDDW 206
Query: 222 PRQVISI--SPAY--NYSAIRPAQPFVEPT----SGQPL 252
R ++ +PA N FV P SG+P
Sbjct: 207 QRGTGTVLYNPAVRANVGGASMNSAFVGPNPNTYSGRPY 245
>gi|238836388|gb|ACR61402.1| IGF-II mRNA-binding protein 2a variant C [Danio rerio]
Length = 453
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 19 PEPRHDVSGKRRREDGE---IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 10 PATRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 69
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ + I S+ + A I ++ K+
Sbjct: 70 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG------CSTACHMIMDIMQKEAVDTKVTE 123
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ +++L S G LIG G+N++K+ + I I + L + +
Sbjct: 124 DIP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNP 171
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G + A A VEI +LRE
Sbjct: 172 ERTIIVKGSIEACCRAEVEIMKKLRE 197
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSK 102
+A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + +R++II+
Sbjct: 276 QAPEQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP 334
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+A+ Q LK+++ + +V + + S AG +IG G
Sbjct: 335 ------PEAQFKAQGRIFGKLKEENFFTAKEEVKL------ETHIKVPSSAAGRVIGKGG 382
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPAVLNA 209
+ + +L+N + A +++ P + E+D V V+ISG A A
Sbjct: 383 KTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFASQTA 424
>gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative
[Tribolium castaneum]
Length = 1116
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+++ D RI+V S +G +IG++G I++I ++T+A + + D + E+ + I +
Sbjct: 124 QSRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQQTRARVDVHRKDNVGSLEKAITIYGN 183
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+N NA ++I L + ++N+ A + +++L + G +IG
Sbjct: 184 PEN------CTNACKRI--LEVMQQEANNTNKGYAKKYYYEICLKILAHNNLIGRIIGKG 235
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++ + I + + N + ++ +R++ + G + + A +I +LR++
Sbjct: 236 GNTIKRIMQETDTKITVSSINDI----NSFNLERIITVKGAIDNMSRAEAQISAKLRQSY 291
Query: 222 PRQVISISP 230
+ +++P
Sbjct: 292 ENDLQAMAP 300
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD------AIARHEERVIIISSKDNDNV 107
+ +P+ +G +IG +G I+ I + A++KIA ++E RV I+ S +
Sbjct: 354 LYIPNNAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPE---- 409
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + LI + E VA T+ +++ SQ G +IG GQN+ +
Sbjct: 410 ------AQWKAQYLIF---EKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRE 460
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
L+ +G+ VI P Q AS E + V I G +V +A
Sbjct: 461 LQRVTGS--VIKLPEQ---GASPQEDETTVHIIGPFFSVQSA 497
Score = 44.3 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 13 VSVVTEPEPRHDVSG---KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEG 69
V++V PE + ++ RE+G + GSD R + I+VPS Q+G++IGK G
Sbjct: 402 VTIVGSPEAQWKAQYLIFEKMREEGFVAGSDDVR------LTVEIMVPSSQVGRIIGKGG 455
Query: 70 HRIQKIREETKATIKIADAIARHEE 94
+++++ T + IK+ + A +E
Sbjct: 456 QNVRELQRVTGSVIKLPEQGASPQE 480
>gi|393218460|gb|EJD03948.1| hypothetical protein FOMMEDRAFT_140050 [Fomitiporia mediterranea
MF3/22]
Length = 347
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
+ + R +V ++ G +IGK G + +R+ET ++ + ERV+ +S
Sbjct: 35 ETLTLRALVSTKDAGVIIGKGGKNVADLRDETGVKAGVSKVVPGVHERVLTVS------- 87
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
D E + +I + D++ + + + +IRLLI+ + G +IG G I+
Sbjct: 88 -GDVEKVAKAYRLIIAQLIDASPPSPTTTS-PPSNTSIRLLISHNLMGTIIGRGGLKIKA 145
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++++SGA +V + + LP ++R+V++ G A+ A+ +IG L E+ R
Sbjct: 146 IQDASGARMVA-SKDMLP-----QSTERIVEVQGSADAIGLAIEQIGKCLLEDWER 195
>gi|358252903|dbj|GAA50475.1| poly(rC)-binding protein 2/3/4 [Clonorchis sinensis]
Length = 859
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 34/198 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
++ R+++ +++G +IGK G ++K REE+ A I I+D ER++ I+ +S
Sbjct: 200 LIVRLLMSGKEVGSIIGKRGENVKKYREESGARINISD--GSSPERIVTITGTTEQ--IS 255
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + Q K +D ++ LL +Q G +IG G I+++R
Sbjct: 256 VAFTLMSQ------KFEDDFTQG--------------LLRMATQCGSIIGKGGSRIKEVR 295
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
+GA+I + A LP ++R V ISG A+ + + + ++P + VI
Sbjct: 296 ELTGASIQV-ASEALPA-----STERTVTISGAAKAISKCVRHLCDIFVDSPAKGPVIPY 349
Query: 229 SPAYNYSA---IRPAQPF 243
P +++ P PF
Sbjct: 350 RPKPAFTSQNMTCPGSPF 367
>gi|256071468|ref|XP_002572062.1| hypothetical protein [Schistosoma mansoni]
Length = 453
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND--N 106
+V R ++P R G +IGK G I+KIR + + I D+ R ER++ I +
Sbjct: 26 NVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDS--RGPERIMTIEGDLQAICS 83
Query: 107 VVSDAENALQQIAALILKDDDS--NSEASK---------VAAGHVAANTI--RLLIAGSQ 153
++ D L+ I L D ++ S+ N I R+L+ SQ
Sbjct: 84 IMRDVCPKLKDIMNAKLSDPKRIMGTQGSRRRPRRSEDPERDDEEDENMIDFRILVHESQ 143
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
AG +IG G+ I+ LR+ ++ + PL +DRVVQ+ D V+ L +
Sbjct: 144 AGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPL-----STDRVVQMVADPDNVVQCLRAV 198
Query: 214 GNQLRENPPRQVISISPAYNYS 235
+ PPR A N+S
Sbjct: 199 IEAVESAPPRGRREDYDAANFS 220
>gi|47229298|emb|CAG04050.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 39/191 (20%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++K+REE+ A I I++ ER+I ++ + +
Sbjct: 50 QEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTT--------SIFKAF 99
Query: 119 AALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG---- 173
+ +I K ++D ++ + A TIRL++ SQ G LIG G I+++R SG
Sbjct: 100 SMIIEKLEEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGCKIKEIREVSGVAPA 159
Query: 174 -------------------ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
V +A + LP + ++R + I+G +++ + +I
Sbjct: 160 GKGFRSLRCNPAAVSLQSAGAQVQVAGDMLP-----NSTERAITIAGTPQSIIECVKQIC 214
Query: 215 NQLRENPPRQV 225
+ E+PP+ V
Sbjct: 215 VVMLESPPKGV 225
>gi|449551271|gb|EMD42235.1| hypothetical protein CERSUDRAFT_110766 [Ceriporiopsis subvermispora
B]
Length = 324
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +R+ T ++ I ERV+ +S V
Sbjct: 28 LTLRALVSTKDAGVIIGKAGKNVADLRDHTGVKAGVSKVIPGVHERVLTVSGS-----VE 82
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I + ++ + S+ + V + A IRLLI+ + G +IG +G I+ ++
Sbjct: 83 GVAKAYALIVSQLVAANPSSPVSPTVPSQQTA---IRLLISHNLMGSVIGRNGLKIKAIQ 139
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
++SGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R + ++
Sbjct: 140 DASGARMV-ASKDMLP-----QSTERIVEVQGASDSIGRAIEEIGRCLLEDWERGLGTV 192
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ LR+ +G A + + P HE RV+ +SG
Sbjct: 29 TLRALVSTKDAGVIIGKAGKNVADLRDHTGVKAGVSKVIPG-------VHE--RVLTVSG 79
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
V V A I +QL P +S + +AIR
Sbjct: 80 SVEGVAKAYALIVSQLVAANPSSPVSPTVPSQQTAIR 116
>gi|19075184|ref|NP_587684.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|74626925|sp|O74919.1|RNC1_SCHPO RecName: Full=RNA-binding protein rnc1; AltName: Full=RNA-binding
protein that suppresses calcineurin deletion 1
gi|3702642|emb|CAA21234.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces pombe]
Length = 398
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 26/207 (12%)
Query: 14 SVVTEPEPRHDV---SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGH 70
S+ +PEP V S K +D Q + R ++ +R+ G +IGK G
Sbjct: 64 SMTNQPEPTSQVPPISAKPPMDDATY---------ATQQLTLRALLSTREAGIIIGKAGK 114
Query: 71 RIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130
+ ++R T + A+ +RV+ IS +NVV + A D + S
Sbjct: 115 NVAELRSTTNVKAGVTKAVPNVHDRVLTISGP-LENVVRAYRFIIDIFAKNSTNPDGTPS 173
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A+ +RLLIA S G +IG +G I KL + +I + + LP
Sbjct: 174 DAN-------TPRKLRLLIAHSLMGSIIGRNGLRI-KLIQDKCSCRMIASKDMLP----- 220
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQL 217
++R V+I G V + A+ EIG L
Sbjct: 221 QSTERTVEIHGTVDNLHAAIWEIGKCL 247
>gi|367008424|ref|XP_003678712.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
gi|359746369|emb|CCE89501.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
Length = 430
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
I+G D R V R++ +Q ++G +G I KI+ T I ++D + ER
Sbjct: 73 IDGMDNSSR----HVHLRMLCLVKQASMIVGHKGENISKIKAVTSTRINVSDNVRGVPER 128
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
V+ V EN + ++ +D + E G+ +TI LLI+ G
Sbjct: 129 VVY--------VRGSCENVAKAFGMIVRSINDRHGEEG--YDGNSIMSTINLLISHHLMG 178
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG G + ++ S A + +P QL + +DR++ I+G A+ A IG
Sbjct: 179 CIIGKHGSRLREIEELSAARLS-ASPQQLIM-----SNDRILSITGVADAIHIATFYIGQ 232
Query: 216 QL 217
+
Sbjct: 233 TI 234
>gi|195972875|ref|NP_001108030.2| insulin-like growth factor 2 mRNA-binding protein 2 [Danio rerio]
gi|124021198|gb|ABM88867.1| IGF2 mRNA-binding protein 2 [Danio rerio]
Length = 607
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 19 PEPRHDVSGKRRREDGE---IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P R+ G+ RE GS R K D R++VP++ +G +IGKEG I+ I
Sbjct: 164 PGTRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ + I S+ + A I ++ K+
Sbjct: 224 TKQTQSKVDIHRKENAGAAEKPITIHSTPEG------CSTACHMIMDIMQKEAVDTKVTE 277
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ +++L S G LIG G+N++K+ + I I + L + +
Sbjct: 278 DIP--------LKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTI----YNP 325
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRE 219
+R + + G + A A VEI +LRE
Sbjct: 326 ERTIIVKGSIEACCRAEVEIMKKLRE 351
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSK 102
+A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + +R++II+
Sbjct: 430 QAPEQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP 488
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+A+ Q LK+++ + +V + + S AG +IG G
Sbjct: 489 ------PEAQFKAQGRIFGKLKEENFFTAKEEVKL------ETHIKVPSSAAGRVIGKGG 536
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISGDVPA 205
+ + +L+N + A +++ P + E+D V V+ISG A
Sbjct: 537 KTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISGHFFA 574
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 21/194 (10%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ N
Sbjct: 60 AANIHMRCLIVTQDASIIIGKAGSHVNEIREKSGARVVVSESIPGNPERIL--------N 111
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + V A TI+ +I S+ G +IG G I+
Sbjct: 112 VSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR--AVTIKFMIPNSRMGSVIGKGGTKIK 169
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++ +SGA + + LP ++R++ +SG A+ A IGN L E R
Sbjct: 170 EIQEASGARLN-ASETMLP-----GSTERLLSVSGVADAIHIATYYIGNILIEANERM-- 221
Query: 227 SISPAYNYSAIRPA 240
P N S+ RP+
Sbjct: 222 ---PTTNNSSYRPS 232
>gi|90081810|dbj|BAE90186.1| unnamed protein product [Macaca fascicularis]
Length = 300
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 75 IREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
+REE+ A I I++ ER++ I+ +DA + A ++D NS ++
Sbjct: 1 MREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEEDIINSMSNS 52
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
A T+RL++ SQ G LIG G I+++R S+GA + + A + LP + ++
Sbjct: 53 PATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTE 105
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPR 223
R V ISG A++ + +I + E+PP+
Sbjct: 106 RAVTISGTPDAIIQCVKQICVVMLESPPK 134
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 60 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 118
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 119 ----QCVKQICVVMLES 131
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 227 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 273
>gi|401626761|gb|EJS44683.1| pbp2p [Saccharomyces arboricola H-6]
Length = 416
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R++ + ++G +G I KI+ ET A I +++ I ER++ +
Sbjct: 70 VHLRMLCLVKHASLIVGHKGATISKIKSETSARINVSNNIRGVPERIVYVRG-----TCD 124
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
D A I +L++ ++ + + TI LLI GC+IG G + ++
Sbjct: 125 DVAKAYSMIVRALLEEHENEDQEEDIEV------TINLLIPHHLMGCIIGKRGSRLREIE 178
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL----RENPPRQV 225
+ S A + +PNQL L +DR++ ISG A+ A IG L E+P +++
Sbjct: 179 DLSAAKL-FASPNQLLL-----SNDRILTISGVPDAIHIATFYIGQTLLNFQMESPQKKL 232
Query: 226 ---ISISPA-YNYSAIRPAQP 242
I P +N I +QP
Sbjct: 233 KRSIFYQPTQFNSVLIDHSQP 253
>gi|270009705|gb|EFA06153.1| hypothetical protein TcasGA2_TC008998 [Tribolium castaneum]
Length = 564
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 35/178 (19%)
Query: 21 PRHDVSGKRRRE-DGEIEGSDPKRRAKA----QDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P +++ R+R DG+ + D KR + F+++VPS G +IGK G I ++
Sbjct: 11 PSPEIADSRKRPLDGDTDNGDTKRSHFSPGGDGTYHFKVLVPSVAAGAIIGKGGETIAQL 70
Query: 76 REETKATIKIA---DAIARHEERVIIIS-SKDNDNVVSDA-----------ENALQQIAA 120
++ET A +K++ D ERV +I+ S D VV+D L + +
Sbjct: 71 QKETGARVKMSKSHDFYPGTTERVCLITGSVDAIMVVADFIADKIREKPDLTKPLVETES 130
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+++D D +++L+ S AG +IG +G I++++ +SG+ + I
Sbjct: 131 KLMQDRDKQ---------------VKILVPNSTAGMIIGKAGNYIKQIKETSGSYVQI 173
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI---ADAIARHEERVIIISSKDN 104
+D +I+VP+ G +IGK G+ I++I+E + + ++I A ++ E + +I K+
Sbjct: 136 RDKQVKILVPNSTAGMIIGKAGNYIKQIKETSGSYVQISQKAKDVSLQERCITVIGEKEQ 195
Query: 105 DNVVSDAENALQQIAALILKDDDSNS 130
+ A Q I A I++D S +
Sbjct: 196 N------RQACQMILAKIVEDPQSGT 215
>gi|388855866|emb|CCF50441.1| related to poly(rC)-binding protein 3 [Ustilago hordei]
Length = 440
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+L R +V +++ G +IGK G + ++RE+T ++ + +RV+ ++ +
Sbjct: 43 LLVRALVSTKEAGIIIGKGGANVAELREQTGVKAGVSKVVPGVHDRVLSVT-----GTLV 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEK 167
+A IA IL++ + + AA T +RLLI+ + G +IG G I+
Sbjct: 98 GISDAFALIAKTILENPLNAPVQADGTPAQAAAQTSSVRLLISHNLMGTVIGRQGLKIKH 157
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++ SGA +V + LP ++RVV++ G V A+ A+ +I L E+ R
Sbjct: 158 IQDLSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIRVAVHQIARCLAEDCDR 207
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQ 183
DD+N+ S A +R L++ +AG +IG G N+ +LR +G A + + P
Sbjct: 26 DDANNNLSAAELDPDATLLVRALVSTKEAGIIIGKGGANVAELREQTGVKAGVSKVVPG- 84
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
H DRV+ ++G + + +A I + ENP
Sbjct: 85 ------VH--DRVLSVTGTLVGISDAFALIAKTILENP 114
>gi|351697928|gb|EHB00847.1| RNA-binding protein Nova-2 [Heterocephalus glaber]
Length = 320
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII- 99
R + + ++++PS G +IGK G I ++++ET ATIK++ D ERV ++
Sbjct: 20 REEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 79
Query: 100 -SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+++ + V S +++I + K + N + A +L++ S AG +I
Sbjct: 80 GTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLII 139
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G ++ + SGA + + +Q P + E RVV +SG+ V A+ I +L
Sbjct: 140 GKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKLA 194
Query: 219 ENPPRQVISIS 229
++++ I+
Sbjct: 195 AESAKELVEIA 205
>gi|256078989|ref|XP_002575774.1| far upstream (fuse) binding protein [Schistosoma mansoni]
gi|360043995|emb|CCD81541.1| putative far upstream (fuse) binding protein [Schistosoma mansoni]
Length = 530
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V +P R +G VIGK G +I +++ +T+ ++I+ A ER + ++
Sbjct: 99 VTTETAIPDRYVGLVIGKGGEQITQLQNDTQCKVQISQAGT--PERTVTLTGTPQQ---- 152
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
++A Q I +I + + + + + TI +++ G +AG +IG +G+ I+ L+
Sbjct: 153 -IDHAKQMIGDIIERAGKNGTPTTPAYNSTGSITTIEMMVPGLKAGLVIGKNGETIKNLQ 211
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+G +V++ + P D+ ++ISG+
Sbjct: 212 EENGVKMVLIQQSNNPT-----PEDKPLRISGE 239
>gi|218190341|gb|EEC72768.1| hypothetical protein OsI_06421 [Oryza sativa Indica Group]
Length = 658
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 22/229 (9%)
Query: 37 EGSDPKRRAKA--QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
GS P+ + Q I +P+ ++G +IGK G I+ ++ ++ A I++ DA+
Sbjct: 87 HGSTPQYSSYGGYQGTSKTIEIPNGRVGVIIGKSGETIKNLQLQSGAKIQVTRDLDALPG 146
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ R + +S + +S AE + ++ A N + K A A+ ++ IA
Sbjct: 147 SQTRPVELSGTPDQ--ISRAEQLINEVLAEADAASSGNLSSRKYNAPQPGADQFQMKIAN 204
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA-- 209
++ G +IG G+ I+ ++ SGA I ++ P LP A E R V I G + A
Sbjct: 205 NKVGLVIGKGGETIKSMQAKSGARIQVV-PLHLPPGDPATE--RTVYIDGTQEQIETAKQ 261
Query: 210 -LVEIGNQLR-ENPPRQVISISPAYNYSAIRPAQP--FVEPTSGQPLLQ 254
++E+ ++ R NP +S Y+ RP +P P G P+ Q
Sbjct: 262 LVIEVTSENRARNP------MSGGYSQQGYRPPRPQSNWGPHGGAPMQQ 304
>gi|353229707|emb|CCD75878.1| hypothetical protein Smp_005860.1 [Schistosoma mansoni]
Length = 437
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND--N 106
+V R ++P R G +IGK G I+KIR + + I D+ R ER++ I +
Sbjct: 26 NVSIRFLIPGRAAGIMIGKGGENIKKIRSQYNVKLNIPDS--RGPERIMTIEGDLQAICS 83
Query: 107 VVSDAENALQQIAALILKDDDS--NSEASK---------VAAGHVAANTI--RLLIAGSQ 153
++ D L+ I L D ++ S+ N I R+L+ SQ
Sbjct: 84 IMRDVCPKLKDIMNAKLSDPKRIMGTQGSRRRPRRSEDPERDDEEDENMIDFRILVHESQ 143
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
AG +IG G+ I+ LR+ ++ + PL +DRVVQ+ D V+ L +
Sbjct: 144 AGSVIGRGGERIKDLRDKYKMRVIKVYQMLAPL-----STDRVVQMVADPDNVVQCLRAV 198
Query: 214 GNQLRENPPRQVISISPAYNYS 235
+ PPR A N+S
Sbjct: 199 IEAVESAPPRGRREDYDAANFS 220
>gi|113677906|ref|NP_001038254.1| neuro-oncological ventral antigen 1 [Danio rerio]
gi|213624727|gb|AAI71499.1| Neuro-oncological ventral antigen 1 [Danio rerio]
gi|213627516|gb|AAI71495.1| Neuro-oncological ventral antigen 1 [Danio rerio]
Length = 495
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 19 PEPRHDVSGKRRRE-DGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKI 75
P+ D+S R+R + E S KR ++ ++++PS G +IGK G I ++
Sbjct: 23 PQMDPDLSDSRKRPLETPTEASSTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQL 82
Query: 76 REETKATIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
++ET ATIK++ D ERV +I +A N + A +++ +S+
Sbjct: 83 QKETGATIKLSKSKDFYPGTTERVCLIQG------TVEALNGVHNFIAEKVREMPQSSQK 136
Query: 133 SKVAAGHVAANTI--------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
++ + T+ +L++ S AG +IG G ++ + SGA + + +Q
Sbjct: 137 TEPVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQK 193
Query: 185 PLCASAHESDRVVQISGD 202
P + E RVV +SG+
Sbjct: 194 PEGINLQE--RVVTVSGE 209
>gi|440636503|gb|ELR06422.1| hypothetical protein GMDG_02138 [Geomyces destructans 20631-21]
Length = 365
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V + R +V G+R DGE + A AQ + R IV S++ G +IGK G + +
Sbjct: 15 VVDAMDRLNVDGERLGPDGEPAPKTEEDYAIAQ-LTLRAIVSSKEAGVIIGKAGKNVADL 73
Query: 76 REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
R+ET ++ + +R++ I+ DA + I A L + A +
Sbjct: 74 RDETGVKAGVSKVVQGVHDRILTITGG------CDAISKAYAIVAKALLEG-----APMM 122
Query: 136 AAGHVAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
G + + T I+LLI+ +Q G +IG G I+ ++++SG +V LP
Sbjct: 123 GMGGLVSTTGTHPIKLLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----Q 176
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R+V++ G + A+ E+ L ++ R
Sbjct: 177 STERIVEVQGTPEGIQKAIWEMCKCLIDDWER 208
>gi|357481253|ref|XP_003610912.1| Far upstream element-binding protein [Medicago truncatula]
gi|355512247|gb|AES93870.1| Far upstream element-binding protein [Medicago truncatula]
Length = 807
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 31/191 (16%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
+HD S +++ I GSD R +I VPS ++G +IGK G I+ ++ + A
Sbjct: 168 QHDTSSGQKQP---ISGSDTTTR--------KIEVPSNKVGVLIGKSGDTIRYLQYNSGA 216
Query: 82 TIKI---ADAIARHEERVI-IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137
I+I ADA R + +I + ++ + AE + ++ + D+ + VA
Sbjct: 217 KIQITRDADADPHSSTRPVELIGTLES---IDKAEKLMN----AVIAEADAGGSPALVAR 269
Query: 138 GH------VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
G V ++ I++ + + G +IG G+ I+ L+ +GA I ++ P LP +
Sbjct: 270 GLSPAQAIVGSDQIQIQVPNEKVGLIIGKGGETIKSLQTKTGARIQLI-PQHLPEGDDSK 328
Query: 192 ESDRVVQISGD 202
E R VQ++GD
Sbjct: 329 E--RTVQVTGD 337
>gi|189188542|ref|XP_001930610.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972216|gb|EDU39715.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 364
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 26/218 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+GE+ + A++Q + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 EGEVAPRTEEEYAESQ-LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGV 87
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLL 148
+RV+ ++ +S A A +L+ A + G V + IRLL
Sbjct: 88 HDRVLSVTGS-----LSGISKAYGLAAKGLLEG------APAMGMGGVIRTDGTHPIRLL 136
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I++++++SG +V LP ++R+V++ G +
Sbjct: 137 ISHNQMGTIIGRQGLKIKQIQDASGVRMVA-QKEMLP-----QSTERIVEVQGSPAGIEK 190
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
A+ EIG L ++ R ++ Y+ + QP P
Sbjct: 191 AVWEIGKCLIDDHERGYGTVL----YNPVVRVQPGAGP 224
>gi|358387038|gb|EHK24633.1| hypothetical protein TRIVIDRAFT_54511 [Trichoderma virens Gv29-8]
Length = 369
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 31 DGELAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 89
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLL 148
+RV+ I+ DA + I A L + A V G V + I+LL
Sbjct: 90 HDRVLTITGG------CDAISRAYAIVARALLEG-----APAVGMGGVIQSNGTHPIKLL 138
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 139 ISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIQR 192
Query: 209 ALVEIGNQLRENPPR 223
A+ EI L ++ R
Sbjct: 193 AIWEISKCLVDDWQR 207
>gi|189239335|ref|XP_973573.2| PREDICTED: similar to pasilla CG16765-PK [Tribolium castaneum]
Length = 535
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 35/178 (19%)
Query: 21 PRHDVSGKRRRE-DGEIEGSDPKRR----AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
P +++ R+R DG+ + D KR F+++VPS G +IGK G I ++
Sbjct: 11 PSPEIADSRKRPLDGDTDNGDTKRSHFSPGGDGTYHFKVLVPSVAAGAIIGKGGETIAQL 70
Query: 76 REETKATIKIA---DAIARHEERVIIIS-SKDNDNVVSDA-----------ENALQQIAA 120
++ET A +K++ D ERV +I+ S D VV+D L + +
Sbjct: 71 QKETGARVKMSKSHDFYPGTTERVCLITGSVDAIMVVADFIADKIREKPDLTKPLVETES 130
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+++D D +++L+ S AG +IG +G I++++ +SG+ + I
Sbjct: 131 KLMQDRDKQ---------------VKILVPNSTAGMIIGKAGNYIKQIKETSGSYVQI 173
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI---ADAIARHEERVIIISSKDN 104
+D +I+VP+ G +IGK G+ I++I+E + + ++I A ++ E + +I K+
Sbjct: 136 RDKQVKILVPNSTAGMIIGKAGNYIKQIKETSGSYVQISQKAKDVSLQERCITVIGEKEQ 195
Query: 105 DNVVSDAENALQQIAALILKDDDSNS 130
+ A Q I A I++D S +
Sbjct: 196 N------RQACQMILAKIVEDPQSGT 215
>gi|310792993|gb|EFQ28454.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 384
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE + A AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 31 DGEPAPRTDEEYAMAQ-LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGV 89
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLL 148
+RV+ I+ S AE A +A +L+ A + G V N I+LL
Sbjct: 90 HDRVLTITG----GCQSVAE-AYAIVAKALLEG------APSMGMGGVVQNNGTHPIKLL 138
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 139 ISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIKG 192
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSG 249
A+ EI L ++ R ++ Y+ + QP T+G
Sbjct: 193 AIWEICKCLVDDWQRGTGTVL----YNPVVRTQPGTTSTAG 229
>gi|160333253|ref|NP_001103813.1| P-element somatic inhibitor [Bombyx mori]
gi|159031799|dbj|BAF91871.1| Bombyx homolog of P-element somatic inhibitor [Bombyx mori]
Length = 703
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 20/211 (9%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
V G R G GS P Q + I VP R +G +IG+ G +I +++ E+ I+
Sbjct: 77 VGGGGRMIAGAGPGSGPTNLLPDQSINEYIRVPDRMVGLIIGRGGEQITRLQAESGCKIQ 136
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD------DDSNSEASKVAAG 138
+A + +R+ ++ + + + A+ + QI ++ D S + G
Sbjct: 137 MAPPTDGNPDRLCTLTG--SRDAIQRAKELVNQIVNHRGRENAPQHQDPSEPGMNMSRPG 194
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL--APNQLPLCASAHESDRV 196
A I +I G++ G +IG +G+ I++L+ +GA +V++ PN+ S ++
Sbjct: 195 PNAMEEI--MIPGAKVGLIIGKNGKTIKQLQEQTGAKMVVIQDGPNE----NSFKPQEKP 248
Query: 197 VQISGDVPAVLNA----LVEIGNQLRENPPR 223
++ISGD V +A + N+ + PPR
Sbjct: 249 LRISGDPAKVEHAKQLVFELLANKDMQEPPR 279
>gi|395733400|ref|XP_003776231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Pongo abelii]
Length = 466
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G + GK G I+ + + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAMTGKGGENIKALPTDYSASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDN-------VVSDAENALQ-----QIAALILKDDDSNSEASK 134
D+ +R++ IS+ D D ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PQRILSISA-DIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLEPDAVECLNYQ 136
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
G +RLLI S AG +I + G I++LR ++ TI + C H +D
Sbjct: 137 HYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQE-----CC-PHSTD 190
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI------RPAQP 242
RVV I G V+ + I + + E+P P Y+Y R A+P
Sbjct: 191 RVVLIGGKPDWVVECIKLILDLISESPIKGRAQPYDRNFYDETYDYGGFTMMFDDRFARP 250
Query: 243 FVEPTSGQ 250
P G+
Sbjct: 251 VGFPMRGR 258
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++ +P G +IGK G RI++I E+ A+IKI + + E+R+I I+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQICHESGASIKIDEPLEGSEDRIITIT 438
>gi|395733398|ref|XP_003776230.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Pongo abelii]
Length = 464
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G + GK G I+ + + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAMTGKGGENIKALPTDYSASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDN-------VVSDAENALQ-----QIAALILKDDDSNSEASK 134
D+ +R++ IS+ D D ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PQRILSISA-DIDTIGEILKKIIPTLEEGLQLPSPTATSQLPLEPDAVECLNYQ 136
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
G +RLLI S AG +I + G I++LR ++ TI + C H +D
Sbjct: 137 HYKGSDFDYELRLLIHQSLAGGIIRVKGVKIKELRENTQTTIKLFQE-----CC-PHSTD 190
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENP------PRQVISISPAYNYSAI------RPAQP 242
RVV I G V+ + I + + E+P P Y+Y R A+P
Sbjct: 191 RVVLIGGKPDWVVECIKLILDLISESPIKGRAQPYDRNFYDETYDYGGFTMMFDDRFARP 250
Query: 243 FVEPTSGQ 250
P G+
Sbjct: 251 VGFPMRGR 258
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++I E+ A+IKI + + E+R+I I+ N
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQICHESGASIKIDEPLEGSEDRIITITGTQEQIQNAQYL 450
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 451 LQNSVKQYA 459
>gi|170084019|ref|XP_001873233.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650785|gb|EDR15025.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 318
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +RE+T ++ I ERV+ ++ V +
Sbjct: 1 LTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVLTVTGP----VEA 56
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ I+ L++ + S S + +IRLLI+ + G +IG SG I+ ++
Sbjct: 57 VAKAYTLIISQLVISNPSSPVTPSSSPS--SLHTSIRLLISHNLMGTIIGRSGLKIKAIQ 114
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+ SGA +V + LP ++RVV++ G A+ A+ EIG L E+ R + ++
Sbjct: 115 DGSGARMVA-SKEMLP-----QSTERVVEVQGSPEAIGRAVEEIGKCLLEDWERGLGTV 167
>gi|391338140|ref|XP_003743419.1| PREDICTED: far upstream element-binding protein 3-like, partial
[Metaseiulus occidentalis]
Length = 502
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 38 GSDPKRRAKAQDVLFRI-------------IVPSRQIGKVIGKEGHRIQKIREETKATIK 84
G +PK+ A +Q V+ + VP + +G +IG++G +I +++ ET ++
Sbjct: 68 GPEPKKMAASQTVIPGVQPPMPSNSVSEEWSVPDKMVGLIIGRDGKQISRLQHETSCKVQ 127
Query: 85 IADAIARHEER-VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
++ ER ++I +K E A + I+ALI + +++ +A + G
Sbjct: 128 LSSESNGTPERPCVLIGTKQA------VEKAKEMISALISRGQETSHKAGSMNGGPGQGE 181
Query: 144 TIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
+ + S+AG +IG +G+ I L++ +G +V+L N
Sbjct: 182 IVEDMPCPASKAGLVIGRNGETIRNLQSRAGVKMVLLQDN 221
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSDA 111
+++VP + +G VIGK G I++I+ ET A ++ H +R+ +I+ + N V+
Sbjct: 296 QLLVPQQAVGVVIGKHGEMIKRIQHETGARVQFQGTPDETHPDRICVITGQSN-QVLGAC 354
Query: 112 ENALQQIAALILKDDD 127
I +++ +DD+
Sbjct: 355 SKISDLITSVLQRDDE 370
>gi|344250764|gb|EGW06868.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 306
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 16/130 (12%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +I K+G ++K+REE+ A I+D ER+I ++ N A+ +
Sbjct: 4 KEVGSIIAKKGESVKKMREESGARTSISDG--NCPERIITLAGPTN---------AIFKA 52
Query: 119 AALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
A+I L++ S+S + AA +RL++ SQ G LIG G I+++R S+GA
Sbjct: 53 FAMIIDKLEEGISSSMTNSTAASRPPV-ALRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 111
Query: 176 IVILAPNQLP 185
+ + A + LP
Sbjct: 112 VQV-AGDMLP 120
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + E I I+
Sbjct: 79 VALRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTEWAITIA 130
>gi|390335395|ref|XP_003724137.1| PREDICTED: far upstream element-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 689
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
EG D R + F VP++ +G +IG++G +I ++ E+ I+IA +R
Sbjct: 127 YEGEDQNRDGHGTEEFF---VPNKMVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDR 183
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+ ++ A+ +LIL D N + A G++ T+ +LI ++ G
Sbjct: 184 QVTLTG---------TPEAVMHAKSLIL--DIVNKASQNEAEGNM---TVDMLIPATKVG 229
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+IG G+ I++L+ +G +V++ + P+ D+ ++ISGD
Sbjct: 230 LVIGKGGETIKQLQEQAGVRMVMI--QEGPVATGM---DKPLRISGD 271
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+IVP +G VIG+ G I++I+E+TKA ++ ERV +I+
Sbjct: 310 VIVPKHAVGMVIGRGGDMIKRIQEQTKARVQFKPGDRDAPERVALIT 356
>gi|330917577|ref|XP_003297863.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
gi|311329164|gb|EFQ93994.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
Length = 371
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 31/239 (12%)
Query: 18 EPEPRHDVSG-----KRRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHR 71
+P P D S R DGE E + A+ L R IV S++ G +IGK G
Sbjct: 7 QPGPGQDASRVADQLDRLNMDGESEVAPRTEEEYAESQLTLRAIVSSKEAGVIIGKAGKN 66
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
+ +R+ET ++ + +RV+ ++ +S A A +L+
Sbjct: 67 VADLRDETGVRAGVSKVVQGVHDRVLSVTGS-----LSGISKAYGLAAKGLLEG------ 115
Query: 132 ASKVAAGHV----AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
A + G V + IRLLI+ +Q G +IG G I++++++SG +V LP
Sbjct: 116 APAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQIQDASGVRMV-AQKEMLP-- 172
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
++R+V++ G + A+ EIG L ++ R ++ Y+ + QP P
Sbjct: 173 ---QSTERIVEVQGSPAGIEKAVWEIGKCLIDDHERGYGTVL----YNPVVRVQPGAGP 224
>gi|358335626|dbj|GAA29562.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 673
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIIISSKDND 105
+V F+I+VPS G +IGK G I I+ +T A +K++ D ERV +I
Sbjct: 27 NVHFKILVPSIAAGAIIGKGGEAITDIQNKTSAKVKMSKANDFYPGTTERVCLIV----- 81
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA---NTIRLLIAGSQAGCLIGMSG 162
+ Q I+ I + +S ++ G + A +++L+ S AG +IG G
Sbjct: 82 GTIDSILRVFQYISEKIYEKPESILRSTN-KGGRMPAERHKQVKILVPNSTAGIIIGKGG 140
Query: 163 QNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
I++++ S+G I V +L L ++R V ++G++P A+ ++ ++ ++P
Sbjct: 141 SFIKEVKESTGVFIQVSQKSKELNL------AERCVTVAGELPQTFEAVKQLLFKIADDP 194
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,799,215,482
Number of Sequences: 23463169
Number of extensions: 148852386
Number of successful extensions: 401934
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 1537
Number of HSP's that attempted gapping in prelim test: 390265
Number of HSP's gapped (non-prelim): 8470
length of query: 257
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 118
effective length of database: 9,097,814,876
effective search space: 1073542155368
effective search space used: 1073542155368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)