Query 025165
Match_columns 257
No_of_seqs 156 out of 1462
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 2.1E-30 7.1E-35 215.0 13.7 166 47-222 3-178 (178)
2 3krm_A Insulin-like growth fac 100.0 2.4E-29 8.1E-34 205.7 14.6 159 49-224 2-161 (163)
3 2jzx_A Poly(RC)-binding protei 100.0 3E-29 1E-33 204.5 11.1 159 47-220 2-160 (160)
4 2jvz_A KH type-splicing, FAR u 100.0 3.2E-28 1.1E-32 198.9 14.3 157 50-219 2-160 (164)
5 1j4w_A FUSE binding protein; s 100.0 4.6E-28 1.6E-32 200.3 13.3 160 49-217 2-174 (174)
6 2qnd_A FMR1 protein; KH domain 99.9 3.3E-21 1.1E-25 154.6 12.1 137 49-219 3-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.8 8E-20 2.7E-24 155.8 10.1 157 49-228 33-200 (219)
8 3n89_A Defective in GERM LINE 99.8 4.1E-19 1.4E-23 161.6 13.1 167 45-219 25-261 (376)
9 1tua_A Hypothetical protein AP 99.7 1.4E-16 4.9E-21 132.7 12.6 149 51-222 5-163 (191)
10 2axy_A Poly(RC)-binding protei 99.6 3.8E-16 1.3E-20 110.8 7.3 70 142-220 4-73 (73)
11 1dtj_A RNA-binding neurooncolo 99.6 1.2E-15 4E-20 109.0 8.5 72 143-219 3-75 (76)
12 2axy_A Poly(RC)-binding protei 99.6 4.9E-16 1.7E-20 110.2 5.6 71 47-124 2-72 (73)
13 2hh2_A KH-type splicing regula 99.6 2E-15 7E-20 114.9 8.5 94 144-245 8-102 (107)
14 1zzk_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 108.0 9.2 72 142-220 6-77 (82)
15 1wvn_A Poly(RC)-binding protei 99.6 2.2E-15 7.4E-20 109.3 7.9 72 142-220 5-76 (82)
16 2p2r_A Poly(RC)-binding protei 99.6 2E-15 6.9E-20 107.8 7.4 72 142-220 4-75 (76)
17 2p2r_A Poly(RC)-binding protei 99.6 1.1E-15 3.7E-20 109.2 5.6 73 48-125 3-75 (76)
18 1ec6_A RNA-binding protein NOV 99.6 3.5E-15 1.2E-19 109.4 7.2 73 143-220 3-76 (87)
19 1zzk_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 107.5 7.8 73 48-125 5-77 (82)
20 2opv_A KHSRP protein; KH domai 99.6 1E-14 3.5E-19 106.4 9.5 73 142-219 13-85 (85)
21 1wvn_A Poly(RC)-binding protei 99.6 3.3E-15 1.1E-19 108.3 6.2 73 48-125 4-76 (82)
22 2dgr_A Ring finger and KH doma 99.6 2.8E-15 9.5E-20 108.9 5.4 71 140-220 7-77 (83)
23 1x4n_A FAR upstream element bi 99.5 1E-14 3.6E-19 107.9 7.9 74 141-221 13-86 (92)
24 1x4m_A FAR upstream element bi 99.5 6.8E-15 2.3E-19 109.4 6.7 76 140-220 12-87 (94)
25 1j5k_A Heterogeneous nuclear r 99.5 8.5E-15 2.9E-19 107.8 6.8 72 142-220 13-84 (89)
26 2hh3_A KH-type splicing regula 99.5 2.3E-14 8E-19 108.7 8.0 72 143-221 11-82 (106)
27 1dtj_A RNA-binding neurooncolo 99.5 1.2E-14 4.1E-19 103.6 6.1 71 49-124 2-75 (76)
28 1j5k_A Heterogeneous nuclear r 99.5 7.2E-15 2.5E-19 108.1 5.0 73 48-125 12-84 (89)
29 1x4n_A FAR upstream element bi 99.5 1.7E-14 5.8E-19 106.8 6.9 74 48-126 13-86 (92)
30 1we8_A Tudor and KH domain con 99.5 1.9E-14 6.6E-19 108.9 7.3 77 141-222 13-89 (104)
31 1x4m_A FAR upstream element bi 99.5 5.9E-14 2E-18 104.2 8.7 75 46-125 11-87 (94)
32 2dgr_A Ring finger and KH doma 99.5 3.2E-14 1.1E-18 103.3 6.3 71 46-124 6-76 (83)
33 2hh3_A KH-type splicing regula 99.5 5.1E-14 1.8E-18 106.8 6.2 72 50-126 11-82 (106)
34 1ec6_A RNA-binding protein NOV 99.5 3.9E-14 1.3E-18 103.7 5.3 71 49-124 2-75 (87)
35 2opv_A KHSRP protein; KH domai 99.5 1.1E-13 3.8E-18 100.9 7.5 71 48-123 12-84 (85)
36 2ctm_A Vigilin; K homology typ 99.5 1.3E-13 4.6E-18 102.5 7.9 73 141-221 15-87 (95)
37 2ctl_A Vigilin; K homology typ 99.5 1.7E-13 5.8E-18 102.4 8.5 71 143-219 17-87 (97)
38 1vig_A Vigilin; RNA-binding pr 99.5 9.5E-14 3.3E-18 97.8 6.4 66 143-217 5-70 (71)
39 2cte_A Vigilin; K homology typ 99.4 1.4E-13 4.9E-18 102.2 6.8 74 141-223 15-88 (94)
40 2hh2_A KH-type splicing regula 99.4 1.4E-13 4.7E-18 104.7 6.0 70 51-125 8-80 (107)
41 1vig_A Vigilin; RNA-binding pr 99.4 2.4E-13 8.2E-18 95.8 6.0 67 48-121 3-69 (71)
42 1we8_A Tudor and KH domain con 99.4 2.4E-13 8.1E-18 102.9 6.0 73 48-125 13-87 (104)
43 2jvz_A KH type-splicing, FAR u 99.4 1.1E-12 3.7E-17 106.5 10.2 76 143-223 2-77 (164)
44 2ctl_A Vigilin; K homology typ 99.4 5.3E-13 1.8E-17 99.7 6.5 72 48-124 15-87 (97)
45 2anr_A Neuro-oncological ventr 99.4 7.7E-13 2.6E-17 109.0 8.0 79 141-224 4-83 (178)
46 2ctk_A Vigilin; K homology typ 99.4 7.7E-13 2.6E-17 100.0 7.0 69 142-219 16-84 (104)
47 2cte_A Vigilin; K homology typ 99.4 4.2E-13 1.5E-17 99.6 5.2 73 46-125 13-85 (94)
48 3krm_A Insulin-like growth fac 99.4 1.4E-12 4.8E-17 105.9 8.4 73 143-221 3-75 (163)
49 1j4w_A FUSE binding protein; s 99.3 1.5E-12 5.3E-17 106.9 7.4 73 142-221 2-74 (174)
50 2ctm_A Vigilin; K homology typ 99.3 2.3E-12 8E-17 95.8 5.9 74 46-125 13-86 (95)
51 2jzx_A Poly(RC)-binding protei 99.3 4.7E-12 1.6E-16 102.4 6.7 70 142-220 4-73 (160)
52 2ctk_A Vigilin; K homology typ 99.3 4.2E-12 1.4E-16 95.9 5.0 70 49-125 16-85 (104)
53 2ctf_A Vigilin; K homology typ 99.2 1.4E-11 4.9E-16 92.6 7.5 66 143-220 27-93 (102)
54 2ctj_A Vigilin; K homology typ 99.2 1.2E-11 4.2E-16 91.8 6.8 71 141-220 15-86 (95)
55 2ctj_A Vigilin; K homology typ 99.2 1.8E-11 6E-16 91.0 5.1 76 44-126 11-87 (95)
56 2ctf_A Vigilin; K homology typ 99.2 9.8E-11 3.4E-15 88.0 8.6 66 49-124 26-92 (102)
57 2cpq_A FragIle X mental retard 98.9 7.8E-10 2.7E-14 81.0 5.3 68 141-220 13-82 (91)
58 3n89_A Defective in GERM LINE 98.9 7.4E-10 2.5E-14 100.8 6.1 75 140-216 27-103 (376)
59 2qnd_A FMR1 protein; KH domain 98.8 3.3E-09 1.1E-13 84.5 6.2 69 51-124 68-142 (144)
60 2cpq_A FragIle X mental retard 98.8 2.6E-09 8.9E-14 78.3 4.8 53 46-103 11-64 (91)
61 1k1g_A SF1-BO isoform; splicin 98.8 2.8E-08 9.4E-13 77.9 9.1 78 142-219 6-99 (131)
62 1k1g_A SF1-BO isoform; splicin 98.7 3.1E-08 1.1E-12 77.6 7.5 73 48-124 5-99 (131)
63 2yqr_A KIAA0907 protein; struc 98.7 5E-08 1.7E-12 75.0 7.6 77 143-219 12-99 (119)
64 2yqr_A KIAA0907 protein; struc 98.7 4.9E-08 1.7E-12 75.1 7.2 72 49-124 11-99 (119)
65 2e3u_A PH-DIM2P, hypothetical 98.5 8.2E-08 2.8E-12 81.5 6.1 66 142-219 33-103 (219)
66 2bl5_A MGC83862 protein, quaki 98.5 2.2E-07 7.4E-12 73.3 6.8 75 50-124 2-101 (140)
67 2bl5_A MGC83862 protein, quaki 98.4 3.1E-07 1.1E-11 72.4 6.1 79 143-222 2-104 (140)
68 1tua_A Hypothetical protein AP 98.4 5.3E-07 1.8E-11 74.9 6.9 69 144-224 5-78 (191)
69 3u1k_A Polyribonucleotide nucl 98.3 6.5E-07 2.2E-11 86.8 6.6 92 109-217 537-629 (630)
70 2cxc_A NUSA; transcription ter 98.2 1.8E-06 6.1E-11 68.5 4.9 104 50-179 36-139 (144)
71 3v69_A Protein filia; RNA-bind 98.0 1.4E-05 4.8E-10 62.1 7.8 67 144-218 57-123 (140)
72 4aid_A Polyribonucleotide nucl 97.9 7.5E-06 2.6E-10 80.3 4.0 100 108-224 539-639 (726)
73 3u1k_A Polyribonucleotide nucl 97.8 9.1E-06 3.1E-10 78.8 3.6 63 49-121 566-628 (630)
74 3v69_A Protein filia; RNA-bind 97.5 0.00028 9.6E-09 54.8 6.8 67 50-122 56-122 (140)
75 2asb_A Transcription elongatio 97.2 4.5E-05 1.6E-09 65.5 0.1 98 59-183 126-224 (251)
76 1k0r_A NUSA; two component arr 97.1 0.00055 1.9E-08 61.9 6.1 105 51-182 236-346 (366)
77 4aid_A Polyribonucleotide nucl 97.1 0.00012 4.3E-09 71.8 1.1 64 50-123 570-633 (726)
78 1hh2_P NUSA, N utilization sub 96.7 0.003 1E-07 56.7 7.0 96 59-181 245-341 (344)
79 3cdi_A Polynucleotide phosphor 96.6 0.0006 2E-08 67.1 2.1 98 109-223 530-628 (723)
80 1e3p_A Guanosine pentaphosphat 96.0 0.00048 1.6E-08 68.1 -2.7 92 108-217 568-660 (757)
81 3cdi_A Polynucleotide phosphor 94.6 0.006 2.1E-07 60.0 0.0 64 49-122 559-622 (723)
82 1e3p_A Guanosine pentaphosphat 93.5 0.0057 1.9E-07 60.4 -2.7 46 52-103 600-645 (757)
83 2cxc_A NUSA; transcription ter 92.7 0.074 2.5E-06 41.8 3.2 37 144-180 37-73 (144)
84 2asb_A Transcription elongatio 91.0 0.21 7.1E-06 42.7 4.3 40 49-88 183-222 (251)
85 1hh2_P NUSA, N utilization sub 89.4 0.25 8.7E-06 44.2 3.7 41 47-87 300-340 (344)
86 1k0r_A NUSA; two component arr 88.4 0.31 1.1E-05 43.9 3.6 41 48-88 305-345 (366)
87 2pt7_G HP1451, hypothetical pr 86.9 0.35 1.2E-05 38.2 2.7 31 50-80 33-63 (152)
88 1wh9_A 40S ribosomal protein S 81.7 0.64 2.2E-05 33.5 1.9 28 51-78 36-63 (92)
89 1wh9_A 40S ribosomal protein S 76.0 1.1 3.8E-05 32.2 1.7 27 144-170 36-62 (92)
90 2pt7_G HP1451, hypothetical pr 73.5 1.6 5.5E-05 34.3 2.2 29 144-172 34-62 (152)
91 2ba0_A Archeal exosome RNA bin 64.4 21 0.00071 29.7 7.3 59 145-216 138-196 (229)
92 3gku_A Probable RNA-binding pr 62.0 2.7 9.1E-05 35.3 1.3 34 51-84 93-126 (225)
93 2z0s_A Probable exosome comple 58.2 22 0.00076 29.6 6.4 63 145-220 150-213 (235)
94 3u5c_D RP13, YS3, 40S ribosoma 57.4 4.3 0.00015 34.3 1.8 29 51-79 45-73 (240)
95 3j20_C 30S ribosomal protein S 56.8 4.2 0.00014 33.7 1.6 27 52-78 42-68 (210)
96 2xzm_C KH domain containing pr 55.5 5.6 0.00019 33.7 2.2 30 50-79 47-76 (243)
97 3iev_A GTP-binding protein ERA 53.5 6.9 0.00024 33.7 2.6 38 49-86 239-285 (308)
98 3iz6_B 40S ribosomal protein S 53.1 4.4 0.00015 34.0 1.2 30 50-79 44-73 (227)
99 3iev_A GTP-binding protein ERA 52.9 6.7 0.00023 33.8 2.4 36 143-178 240-284 (308)
100 3r8n_C 30S ribosomal protein S 48.9 4.5 0.00015 33.4 0.5 27 52-78 63-89 (206)
101 3u5c_D RP13, YS3, 40S ribosoma 48.4 7.1 0.00024 32.9 1.7 27 144-170 45-71 (240)
102 3j20_C 30S ribosomal protein S 47.8 7.1 0.00024 32.3 1.6 36 144-179 41-83 (210)
103 3iz6_B 40S ribosomal protein S 47.7 12 0.0004 31.4 2.9 28 143-170 44-71 (227)
104 2zkq_c 40S ribosomal protein S 47.5 5.2 0.00018 33.9 0.7 30 50-79 44-73 (243)
105 2xzm_C KH domain containing pr 47.4 9 0.00031 32.4 2.2 28 143-170 47-74 (243)
106 3i1m_C 30S ribosomal protein S 45.8 5.2 0.00018 33.6 0.5 27 52-78 64-90 (233)
107 2jva_A Peptidyl-tRNA hydrolase 44.2 30 0.001 25.3 4.4 57 66-124 24-97 (108)
108 2vqe_C 30S ribosomal protein S 43.6 8 0.00027 32.6 1.3 27 52-78 64-90 (239)
109 3gku_A Probable RNA-binding pr 43.5 7.1 0.00024 32.6 1.0 34 144-177 93-126 (225)
110 3bbn_C Ribosomal protein S3; s 42.8 7 0.00024 32.5 0.8 28 52-79 72-99 (218)
111 3r8n_C 30S ribosomal protein S 39.9 7.5 0.00026 32.0 0.6 35 144-178 62-100 (206)
112 2zkq_c 40S ribosomal protein S 37.3 8.5 0.00029 32.5 0.5 29 143-171 44-72 (243)
113 3i1m_C 30S ribosomal protein S 37.0 8.6 0.0003 32.3 0.5 34 144-177 63-100 (233)
114 1wf3_A GTP-binding protein; GT 36.4 7.2 0.00025 33.6 -0.1 33 146-178 233-274 (301)
115 2vqe_C 30S ribosomal protein S 36.0 13 0.00043 31.4 1.4 28 144-171 63-90 (239)
116 1wf3_A GTP-binding protein; GT 33.9 9.4 0.00032 32.9 0.2 35 52-86 232-275 (301)
117 1go3_E DNA-directed RNA polyme 33.4 28 0.00094 27.6 3.0 35 50-87 7-53 (187)
118 3dhx_A Methionine import ATP-b 32.5 69 0.0024 22.8 4.8 52 161-215 34-87 (106)
119 3bbn_C Ribosomal protein S3; s 31.9 11 0.00039 31.2 0.4 27 144-170 71-97 (218)
120 4dh9_Y YAEJ; ribosome, YAEJ, r 31.4 62 0.0021 24.7 4.6 58 66-125 24-98 (140)
121 1j26_A Immature colon carcinom 29.7 33 0.0011 25.3 2.6 31 94-124 75-105 (112)
122 2ja9_A Exosome complex exonucl 26.9 56 0.0019 25.9 3.7 35 145-179 93-128 (175)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.97 E-value=2.1e-30 Score=215.04 Aligned_cols=166 Identities=25% Similarity=0.388 Sum_probs=134.4
Q ss_pred CCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc---ccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 025165 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~ 123 (257)
+++++++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|..+ ++.+|..+|.+++.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~-----~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE-----ALNAVHGFIAEKIR 77 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH-----HHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH-----HHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999854 3568899999999843 68899999999987
Q ss_pred cCCCCCchhh--hh-----ccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceE
Q 025165 124 KDDDSNSEAS--KV-----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196 (257)
Q Consensus 124 ~~~~~~~~~~--~~-----~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~ 196 (257)
+......... .. ........+.+++||.+++|+|||++|++||+|+++|||+|+|.+....+. +.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~-----~~~~~ 152 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-----LQNRV 152 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC---------CCEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC-----CCceE
Confidence 6543211000 00 001123468899999999999999999999999999999999975433332 67899
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcCCC
Q 025165 197 VQISGDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 197 V~I~G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
|+|+|++++|.+|+++|.++|+++|.
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~p~ 178 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQEDPQ 178 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999874
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=205.74 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=132.3
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc-ccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~-~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~ 127 (257)
+-+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|++ ..+.+|+.+|.+.+.+...
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~-----e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP-----EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhcccc
Confidence 3478999999999999999999999999999999999975 567899999999974 3788999999999876532
Q ss_pred CCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHH
Q 025165 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~ 207 (257)
.... .....+.++.||.+++|+|||++|++|++|+++|||+|.|.. +..|. ...++.|+|+|++++|+
T Consensus 77 ~~~~-------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~----~~~~~~v~I~G~~~~v~ 144 (163)
T 3krm_A 77 FGPK-------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD----ENDQVIVKIIGHFYASQ 144 (163)
T ss_dssp SCSS-------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC----TTSEEEEEEEECHHHHH
T ss_pred cccc-------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC----CCCceEEEEEeCHHHHH
Confidence 2111 122357799999999999999999999999999999999854 44454 14456999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 025165 208 NALVEIGNQLRENPPRQ 224 (257)
Q Consensus 208 ~A~~~I~~~l~e~~~~~ 224 (257)
+|..+|.++|++..+++
T Consensus 145 ~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 145 MAQRKIRDILAQVKQQH 161 (163)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999866543
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=204.52 Aligned_cols=159 Identities=28% Similarity=0.493 Sum_probs=131.5
Q ss_pred CCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCC
Q 025165 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~ 126 (257)
+.+++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+. .++.+|+.+|.+.+.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH-----HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH-----HHHHHHHHHHHHHHHhhc
Confidence 356889999999999999999999999999999999999976 5789999999984 368889999988886532
Q ss_pred CCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHH
Q 025165 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206 (257)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v 206 (257)
....... ........+.++.||.+++|+|||++|++|++|+++|||+|+|.+ +..|. +.++.|+|+|+++++
T Consensus 75 ~~~~~~~--~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~-----~~~~~v~I~G~~~~v 146 (160)
T 2jzx_A 75 SSSMTNS--TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN-----STERAITIAGIPQSI 146 (160)
T ss_dssp TSCCCSS--SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT-----CCEEEEEEEECHHHH
T ss_pred cccCCCC--ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC-----CCceEEEEEcCHHHH
Confidence 1110000 001123468999999999999999999999999999999999854 34453 678999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 025165 207 LNALVEIGNQLREN 220 (257)
Q Consensus 207 ~~A~~~I~~~l~e~ 220 (257)
.+|+++|.+++.|+
T Consensus 147 ~~A~~~I~~~i~e~ 160 (160)
T 2jzx_A 147 IECVKQICVVMLET 160 (160)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=198.94 Aligned_cols=157 Identities=19% Similarity=0.325 Sum_probs=127.9
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccc--cCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~ 127 (257)
++++|+||.+.+|.||||+|++||+|+++|||+|++.+.. +++.+|+|+|+|.+ ..+.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH-----HHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999997542 45679999999974 3788999999999876542
Q ss_pred CCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHH
Q 025165 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~ 207 (257)
........ .+.....+.++.||.+++|+|||++|++|++|+++|||+|+|.+.+ + .+.++.|+|+|++++++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~-----~~~~~~v~I~G~~~~v~ 148 (164)
T 2jvz_A 77 GGFGDRNE-YGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G-----TGPEKIAHIMGPPDRCE 148 (164)
T ss_dssp CCCSSCSS-CTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T-----TSSEEEEEEESCHHHHH
T ss_pred CCCCCccc-cCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C-----CCCcEEEEEEcCHHHHH
Confidence 21111000 0111124578999999999999999999999999999999996532 1 25689999999999999
Q ss_pred HHHHHHHHHHhc
Q 025165 208 NALVEIGNQLRE 219 (257)
Q Consensus 208 ~A~~~I~~~l~e 219 (257)
+|..+|.++|++
T Consensus 149 ~A~~~I~~~i~~ 160 (164)
T 2jvz_A 149 HAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999976
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.95 E-value=4.6e-28 Score=200.28 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=126.3
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~ 128 (257)
+.+++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|+.+ ++.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD-----RAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHH-----HHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHhcccC
Confidence 56899999999999999999999999999999999998765568899999999843 6888999998888664321
Q ss_pred Cchhh------------hhc-cCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCce
Q 025165 129 NSEAS------------KVA-AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195 (257)
Q Consensus 129 ~~~~~------------~~~-~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r 195 (257)
..... ... .......+.++.||.+++|+|||++|++||+|+++|||+|+|.+.. .+ +. ++.++
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~-~~--~~~~~ 152 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PP-NA--DPNMK 152 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TT-TS--CTTEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CC-CC--CCCce
Confidence 10000 000 0011235789999999999999999999999999999999997532 12 21 36789
Q ss_pred EEEEEcCHHHHHHHHHHHHHHH
Q 025165 196 VVQISGDVPAVLNALVEIGNQL 217 (257)
Q Consensus 196 ~V~I~G~~~~v~~A~~~I~~~l 217 (257)
.|+|+|+++++.+|+++|.++|
T Consensus 153 ~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 153 LFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.86 E-value=3.3e-21 Score=154.60 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=101.9
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~ 128 (257)
.++.+|+||.+.+|++||++|++|++|++++| |++.... ..+++++...+.++ .+.+| ..++. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~-----~v~~~----~~~l~-~--- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQD-----AVKKA----RSFLE-F--- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHH-----HHHHH----HHHHC-E---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHH-----HHHHH----HHhhh-c---
Confidence 57899999999999999999999999999999 5544321 13444444444432 23332 22221 1
Q ss_pred CchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCC-eEEEeCCCCCCcccCCCCCc--eEEEEEcCHHH
Q 025165 129 NSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA-TIVILAPNQLPLCASAHESD--RVVQISGDVPA 205 (257)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~~~--r~V~I~G~~~~ 205 (257)
...++.||.+++|++|||+|.+|+.|++.||+ +|+|.+.++... ...+ +.|+|+|++++
T Consensus 67 --------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~----~~~~~~~~vtI~G~~~~ 128 (144)
T 2qnd_A 67 --------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV----PQEEGMVPFVFVGTKDS 128 (144)
T ss_dssp --------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC----CCCTTEEEEEEEEEHHH
T ss_pred --------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc----cccCCeeEEEEEeCHHH
Confidence 13789999999999999999999999999997 999986433210 0233 46899999999
Q ss_pred HHHHHHHHHHHHhc
Q 025165 206 VLNALVEIGNQLRE 219 (257)
Q Consensus 206 v~~A~~~I~~~l~e 219 (257)
|+.|.++|.++|++
T Consensus 129 v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 129 IANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999976
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.81 E-value=8e-20 Score=155.78 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=117.5
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~ 128 (257)
.-..++.||.+.+|.|||++|++|+.|+++|||+|++.. .++.|.|.+........++++|..+|..+......
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~- 106 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSP- 106 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCH-
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCc-
Confidence 345699999999999999999999999999999999983 35678888865211134788999999988743211
Q ss_pred CchhhhhccCCCcceEEEEEec-----------cCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEE
Q 025165 129 NSEASKVAAGHVAANTIRLLIA-----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197 (257)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~Vp-----------~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V 197 (257)
+...... ..+.....+.++ ...+|+|||++|++|+.|++.|||+|.|. ++.|
T Consensus 107 --e~g~~ll-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------------~~~v 169 (219)
T 2e3u_A 107 --ERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------------GKTV 169 (219)
T ss_dssp --HHHGGGG-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------------TTEE
T ss_pred --cccceec-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------------CeEE
Confidence 1000000 011111122222 12689999999999999999999999984 2569
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCCCCCcccC
Q 025165 198 QISGDVPAVLNALVEIGNQLRENPPRQVISI 228 (257)
Q Consensus 198 ~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~~ 228 (257)
+|.|++++++.|..+|.++|.+.++..++.+
T Consensus 170 ~i~G~~~~i~~A~~~i~~li~g~~~~~vy~~ 200 (219)
T 2e3u_A 170 AIIGNPIQIEIAKTAIEKLARGSPHGSVYRY 200 (219)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999999999999999888765544
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.80 E-value=4.1e-19 Score=161.56 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=120.7
Q ss_pred CCCCCeEEEEEecCcccccccccCc--hhHHHHHhhhCceEEEcccc--c---CCCccEEEecCCCCCchhhHHHHHHHH
Q 025165 45 AKAQDVLFRIIVPSRQIGKVIGKEG--HRIQKIREETKATIKIADAI--A---RHEERVIIISSKDNDNVVSDAENALQQ 117 (257)
Q Consensus 45 ~~~~~~~~rilVP~~~vg~IIGkgG--~~Ik~I~~~tga~I~i~~~~--~---~~~ervv~I~G~~~~~~~~~~~~a~~~ 117 (257)
.+.+.+++.+.||...|+.||||+| ++|++|+++|||+|+|++.. . ......|+|+|.++ ++.+|..+
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~e-----nVE~AR~~ 99 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFG-----DVDRARML 99 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHH-----HHHHHHHH
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHH-----HHHHHHHH
Confidence 4467899999999999999999999 99999999999999999764 1 12346799999965 56677776
Q ss_pred HHHH----------------------HhcCCCC----------C-----chh----------hh----------h-cc--
Q 025165 118 IAAL----------------------ILKDDDS----------N-----SEA----------SK----------V-AA-- 137 (257)
Q Consensus 118 I~~~----------------------i~~~~~~----------~-----~~~----------~~----------~-~~-- 137 (257)
|.++ +...... . .+. .. . ..
T Consensus 100 I~~l~Pl~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e 179 (376)
T 3n89_A 100 MRRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES 179 (376)
T ss_dssp HHHSCEEEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh
Confidence 6552 2110000 0 000 00 0 00
Q ss_pred -CCCcceEEEEEeccCccceeecCCC--hhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHH
Q 025165 138 -GHVAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214 (257)
Q Consensus 138 -~~~~~~~~~l~Vp~~~vG~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~ 214 (257)
.....++..+.|+..+|..|||++| ..|++|+++|||+|.++..++..+. ......|+|+|+.++|.+|++.|+
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~---~~~~~~ItItGs~e~V~~Ark~I~ 256 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET---RGNIYEIKVVGNIDNVLKARRYIM 256 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC------------CCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc---cCCceEEEEEeCHHHHHHHHHHHH
Confidence 1124578899999999999999999 5579999999999998654331110 024679999999999999999999
Q ss_pred HHHhc
Q 025165 215 NQLRE 219 (257)
Q Consensus 215 ~~l~e 219 (257)
++|-=
T Consensus 257 ~lLPv 261 (376)
T 3n89_A 257 DLLPI 261 (376)
T ss_dssp HTSEE
T ss_pred hhCCE
Confidence 98753
No 9
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.70 E-value=1.4e-16 Score=132.70 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=113.2
Q ss_pred EEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCCCc
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~~~ 130 (257)
.++++||.+.+|.|||++|++++.|++.+|++|++. ..++.++|...........+++|...|..+.......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e-- 77 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPE-- 77 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHH--
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHH--
Confidence 369999999999999999999999999999999997 3477888874332222457899999998877654321
Q ss_pred hhhhhccCCCcceEEEEEec----------cCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEE
Q 025165 131 EASKVAAGHVAANTIRLLIA----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200 (257)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~Vp----------~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~ 200 (257)
+..+.. ..+.....+.++ ....|+|||++|.+|+.|++.|||+|.|. ++.|.|.
T Consensus 78 ~A~~Ll--~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------------~~~v~i~ 141 (191)
T 1tua_A 78 KAFRLL--EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------------EYEVAII 141 (191)
T ss_dssp HHGGGG--STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC--------------SSEEEEE
T ss_pred Hhhhcc--cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc--------------CCEEEEE
Confidence 111110 011122223343 23589999999999999999999999983 2479999
Q ss_pred cCHHHHHHHHHHHHHHHhcCCC
Q 025165 201 GDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 201 G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
|++++++.|...|.++|...++
T Consensus 142 G~~~~i~~Ar~~i~~li~g~~h 163 (191)
T 1tua_A 142 GDYERAMAAKQAIEMLAEGRMH 163 (191)
T ss_dssp EEHHHHHHHHHHHHHHHTTCCH
T ss_pred eChHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999987665
No 10
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.64 E-value=3.8e-16 Score=110.83 Aligned_cols=70 Identities=34% Similarity=0.617 Sum_probs=63.6
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
....+++||.+.+|.|||++|++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|.++|.++|.|+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~---------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS---------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC---------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999999999999999999642 146899999999999999999999999874
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.62 E-value=1.2e-15 Score=108.98 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=63.5
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.+.++.||.+.+|+|||++|++|++|++.|||+|+|.+.++ .| ++.++.|+|+|+++++.+|..+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP-----GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST-----TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999975432 23 36789999999999999999999999875
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.61 E-value=4.9e-16 Score=110.24 Aligned_cols=71 Identities=25% Similarity=0.502 Sum_probs=64.4
Q ss_pred CCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
+.+++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|.+ .++.+|+.+|.+++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~-----~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECH-----HHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999976 5789999999984 3788999999998865
No 13
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=114.85 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=66.2
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCCCC
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~~~ 223 (257)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.... .+. .+..+|.|+|+|++++|++|+++|.++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~~---~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~-- 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PPN---GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL-- 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CTT---CCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC--
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CCC---CCCCceEEEEECCHHHHHHHHHHHHHHHhccc--
Confidence 689999999999999999999999999999999996532 221 12578999999999999999999999998864
Q ss_pred CcccCCCCCCC-CCCCCCCCCcC
Q 025165 224 QVISISPAYNY-SAIRPAQPFVE 245 (257)
Q Consensus 224 ~~~~~~p~~~~-~~~~~~~~~~~ 245 (257)
..|.|...- ...+.++.|.+
T Consensus 82 --~~~~p~~~~~~~~~~~~~~~~ 102 (107)
T 2hh2_A 82 --CPVGPGPGGPGPAGPMGPFNP 102 (107)
T ss_dssp --CEEC-----------------
T ss_pred --ccCCCCCCCCCCCCCCCCCCC
Confidence 245443222 23333466665
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.60 E-value=3.7e-15 Score=108.00 Aligned_cols=72 Identities=32% Similarity=0.485 Sum_probs=64.5
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+++|+|||++|++|++|+++|||+|+|.. ..+ ++.+|.|+|+|+++++++|+++|.+++.+.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLE-----GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTS-----CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999953 222 267899999999999999999999999874
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.60 E-value=2.2e-15 Score=109.25 Aligned_cols=72 Identities=35% Similarity=0.520 Sum_probs=63.6
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+++|+|||++|++|++|+++|||+|+|... .+ ++.+|.|+|+|+++++++|+++|.+++.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VE-----GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT-----TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CC-----CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999642 22 367999999999999999999999999886
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=107.82 Aligned_cols=72 Identities=32% Similarity=0.512 Sum_probs=64.5
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+++|+|||++|++|++|+++|||+|+|... .+ ++.+|.|+|+|+++++.+|.++|.+++.+.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VE-----GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT-----TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CC-----CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3578999999999999999999999999999999999642 22 367999999999999999999999999864
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=109.22 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=66.1
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|++ .++.+|..+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA-----ASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCH-----HHHHHHHHHHHHHHHcc
Confidence 56889999999999999999999999999999999999987677889999999984 37889999999988653
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.57 E-value=3.5e-15 Score=109.36 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=65.0
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
.+.++.||.+.+|+|||++|++|++|++.|||+|+|.+.++ .| ++.++.|+|+|+++++.+|..+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~-----g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP-----GTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST-----TSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC-----CCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999975432 23 267899999999999999999999999874
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.57 E-value=4.7e-15 Score=107.50 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=65.6
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..+++.+|.|+|+|++ .++++|..+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999987677889999999984 37889999999988653
No 20
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=106.38 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=63.8
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
....++.||.+.+|+|||++|++||+|+++|||+|.|......+ .+.+|.|+|+|+++++.+|.++|.++++|
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN-----TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS-----TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC-----CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999996532212 26789999999999999999999999875
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.56 E-value=3.3e-15 Score=108.30 Aligned_cols=73 Identities=26% Similarity=0.421 Sum_probs=64.8
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|+++ ++.+|..+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA-----SISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHH-----HHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHH-----HHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999876678899999999853 7889999999988654
No 22
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=108.89 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=63.4
Q ss_pred CcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.+..+.++.||.+++|+||||+|++||+|+++|||+|+|++. ..+++|+|+|+++++++|+++|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~----------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR----------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS----------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC----------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 345788999999999999999999999999999999999643 2368999999999999999999998776
Q ss_pred C
Q 025165 220 N 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 77 r 77 (83)
T 2dgr_A 77 R 77 (83)
T ss_dssp C
T ss_pred c
Confidence 4
No 23
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.55 E-value=1e-14 Score=107.94 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=65.7
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.+|.||.+++|+|||++|++|++|+++|||+|+|.... + +..+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999996432 2 257899999999999999999999999885
Q ss_pred C
Q 025165 221 P 221 (257)
Q Consensus 221 ~ 221 (257)
.
T Consensus 86 ~ 86 (92)
T 1x4n_A 86 R 86 (92)
T ss_dssp T
T ss_pred c
Confidence 4
No 24
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.55 E-value=6.8e-15 Score=109.38 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=66.2
Q ss_pred CcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
++..+.+|+||.+.+|+||||+|++||+|+++|||+|+|....... ...+|.|+|+|+++++.+|+++|.+++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-----TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-----SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999996432211 14789999999999999999999999987
Q ss_pred C
Q 025165 220 N 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 87 ~ 87 (94)
T 1x4m_A 87 Q 87 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.54 E-value=8.5e-15 Score=107.76 Aligned_cols=72 Identities=32% Similarity=0.471 Sum_probs=64.8
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+.+|.|||++|++||+|+++|||+|+|.. ..+. +.+|.|+|+|+++++++|+++|.+++.+.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~~-----~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEG-----SEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCSS-----SSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCCC-----CCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999999953 2232 67899999999999999999999999885
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=108.74 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=63.9
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
.+.++.||.+++|+||||+|++||+|+++|||+|+|.+.+ + .+.+|.|+|+|+++++++|+++|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G-----TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C-----CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999996432 2 2568999999999999999999999998854
No 27
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=1.2e-14 Score=103.64 Aligned_cols=71 Identities=23% Similarity=0.380 Sum_probs=61.8
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc---ccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|++ .++.+|..+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESH-----HHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999964 356788999999984 3788999999888754
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.52 E-value=7.2e-15 Score=108.14 Aligned_cols=73 Identities=29% Similarity=0.513 Sum_probs=65.9
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|++..+++.+|.|+|+|+++ ++++|+.+|.+++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e-----~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD-----QIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHH-----HHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999999999876778899999999853 7889999999988653
No 29
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.52 E-value=1.7e-14 Score=106.81 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=66.3
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~ 126 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|+++ ++++|..+|.+++.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e-----~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPE-----SVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHH-----HHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999999876667899999999843 78899999999887653
No 30
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.52 E-value=1.9e-14 Score=108.88 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=66.3
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.+|.||.+.+|+|||++|++|++|+++|||+|+|.+..+.. .+.++.|+|+|+++++++|+++|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-----SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 346789999999999999999999999999999999996532211 146899999999999999999999999886
Q ss_pred CC
Q 025165 221 PP 222 (257)
Q Consensus 221 ~~ 222 (257)
+.
T Consensus 88 ~~ 89 (104)
T 1we8_A 88 EE 89 (104)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 31
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.50 E-value=5.9e-14 Score=104.25 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=66.0
Q ss_pred CCCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccccc--CCCccEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 025165 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~--~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~ 123 (257)
.++.++++|+||.+.+|+||||+|++||+|+++|||+|+|.+... ...+|+|+|+|+++ .+.+|+.+|.+++.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY-----KVQQAKEMVLELIR 85 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTT-----THHHHHHHHHHHHC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHH-----HHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999997532 35799999999765 68899999999987
Q ss_pred cC
Q 025165 124 KD 125 (257)
Q Consensus 124 ~~ 125 (257)
+.
T Consensus 86 ~~ 87 (94)
T 1x4m_A 86 DQ 87 (94)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 32
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=103.25 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=62.6
Q ss_pred CCCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
.++.++++|.||.+.+|+||||+|++||+|+++|||+|+|+.. .++++++|+|.++ ++++|..+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e-----~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPE-----NVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTT-----THHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHH-----HHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999864 4579999999976 688899999997654
No 33
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=106.83 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=63.1
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCC
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~ 126 (257)
.+++|+||.+.++.||||+|++||+|+++|+|+|+|.+..+.+++|+|+|+|+++ ++++|..+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e-----~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPD-----RCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHH-----HHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHH-----HHHHHHHHHHHHHhccc
Confidence 3689999999999999999999999999999999999765567899999999843 68899999999887643
No 34
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=3.9e-14 Score=103.69 Aligned_cols=71 Identities=24% Similarity=0.387 Sum_probs=62.7
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc---ccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|++ .++.+|..+|.+++.+
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~-----~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRVTY 75 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSH-----HHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999964 356789999999984 3788999999998865
No 35
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=100.87 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=61.7
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccc--cCCCccEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~ 123 (257)
....++|.||.+.+|.||||+|++||+|+++|||+|+|.+.. +.+.+|.|+|+|.+ ..+.+|..+|.+++.
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~-----~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECH-----HHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999752 34679999999964 378889999888875
No 36
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.3e-13 Score=102.54 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..++..+.||.+++|.|||++|++|++|+++|||+|+|+...+ ..++.|+|+|.+++|++|+++|..++.+.
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA--------PDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC--------SCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC--------CCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999964211 34689999999999999999999998874
Q ss_pred C
Q 025165 221 P 221 (257)
Q Consensus 221 ~ 221 (257)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.7e-13 Score=102.35 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=63.0
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
++..|.||..++|.|||++|++|++|+++|||+|+|++..+ +. ..++.|+|+|+.+++.+|+.+|..++.+
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~~-----~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-GN-----QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-CS-----SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999964321 21 3679999999999999999999999876
No 38
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.46 E-value=9.5e-14 Score=97.83 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=59.1
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 217 (257)
.+..+.||.+++|.|||++|++|++|+++|||+|+|++. +..++.|+|+|+++++++|+++|.+++
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~---------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD---------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC---------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC---------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999642 135689999999999999999998864
No 39
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.4e-13 Score=102.19 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=64.8
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.++.||.+.+|.|||++|++||+|+++|||+|+|++.+ +.++.|+|+|+++++.+|..+|.+++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~---------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD---------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT---------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC---------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 346899999999999999999999999999999999996421 33589999999999999999999999885
Q ss_pred CCC
Q 025165 221 PPR 223 (257)
Q Consensus 221 ~~~ 223 (257)
...
T Consensus 86 ~~~ 88 (94)
T 2cte_A 86 DKR 88 (94)
T ss_dssp HTC
T ss_pred ccc
Confidence 443
No 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=104.67 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=61.3
Q ss_pred EEEEEecCcccccccccCchhHHHHHhhhCceEEEcccc---cCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI---ARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~---~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
+++|+||.+.+|.||||+|++||+|+++|||+|+|.+.. .+..+|+|+|+|+. .++.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~-----e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSP-----QQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCH-----HHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCH-----HHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999752 23468999999974 47899999999998654
No 41
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.41 E-value=2.4e-13 Score=95.76 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=58.0
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHH
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~ 121 (257)
...+..|.||.+.+|.|||++|++|++|+++|||+|+|++. +..+|.|+|+|..+ .+.+|+.+|..+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQ-----GVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSH-----HHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHH-----HHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999975 45778999999853 678888877765
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=2.4e-13 Score=102.85 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=63.0
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccC--CCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
-..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+...+ ..+|.|+|+|..+ .+.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999999999999975432 3689999999854 6788999999988653
No 43
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=106.46 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=66.2
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCCC
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
++.+|+||.+.+|+|||++|++||+|+++|||+|++.+....+ +..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN-----TNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS-----SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC-----CCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999996432222 25789999999999999999999999998654
Q ss_pred C
Q 025165 223 R 223 (257)
Q Consensus 223 ~ 223 (257)
.
T Consensus 77 ~ 77 (164)
T 2jvz_A 77 G 77 (164)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=5.3e-13 Score=99.66 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=61.0
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccc-cCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
..+++.|.||.+.++.||||+|++|++|+++|||+|+|++.. ++..+|.|+|+|+.+ ++.+|..+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e-----~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEK-----NTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHH-----HHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999753 234689999999843 577788888777654
No 45
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.38 E-value=7.7e-13 Score=109.01 Aligned_cols=79 Identities=30% Similarity=0.471 Sum_probs=69.0
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
+.++++++||.+.+|.|||++|++|++|+++|||+|+|.+..+ .|. ..+|.|+|+|+++++.+|..+|.+++.+
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG-----TTERVCLIQGTIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT-----SSEEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC-----CCCceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999965422 343 6789999999999999999999999998
Q ss_pred CCCCC
Q 025165 220 NPPRQ 224 (257)
Q Consensus 220 ~~~~~ 224 (257)
.+...
T Consensus 79 ~~~~~ 83 (178)
T 2anr_A 79 MPQNV 83 (178)
T ss_dssp CCCC-
T ss_pred cCCcc
Confidence 76543
No 46
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=7.7e-13 Score=100.02 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=61.7
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.....+.||.+++|.|||++|++|++|+++|||+|+|+.. +...+.|+|+|+++++++|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~---------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP---------ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT---------TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC---------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999642 13356999999999999999999999877
No 47
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.37 E-value=4.2e-13 Score=99.62 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=62.8
Q ss_pred CCCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
....++.+|.||.+.+|.||||+|++||+|+++|||+|+|++. +..++.|+|+|.. ..+.+|..+|..++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~-----e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTK-----EGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECH-----HHHHHHHHHHHHHhhcc
Confidence 3467899999999999999999999999999999999999965 2346889999984 36888999998888653
No 48
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=105.90 Aligned_cols=73 Identities=30% Similarity=0.466 Sum_probs=65.5
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
.+++++||.+.+|.|||++|++|++|+++|||+|+|... ..|. +.+|+|+|+|+++++.+|+.+|.+++.+..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~~-----~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETPD-----SKVRMVIITGPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SSTT-----CSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999643 3333 689999999999999999999999999863
No 49
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.34 E-value=1.5e-12 Score=106.85 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=65.2
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
..+.+|+||.+++|.|||++|++||+|+++|||+|+|.+.+ +. ..+|.|+|+|++++|.+|+.+|.+++.+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~-----~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--GT-----TPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--TS-----CSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999996432 22 578999999999999999999999999865
No 50
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=2.3e-12 Score=95.77 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=62.3
Q ss_pred CCCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
....+++.|.||.+.+|.|||++|++|++|+++|||+|+|++.. ...++.|+|+|.++ ++.+|+.+|..++.+.
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e-----~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPE-----NVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHH-----HHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHH-----HHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999998652 13578999999853 6788888888877654
No 51
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=102.44 Aligned_cols=70 Identities=34% Similarity=0.617 Sum_probs=63.9
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
....+++||.+.+|.|||++|++|++|+++|||+|+|... +..+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999642 146899999999999999999999999885
No 52
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.2e-12 Score=95.94 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=60.3
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
.....|.||.+.+|.|||+||++|++|+++|||+|+|++. +...+.|+|+|..+ ++.+|..+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e-----~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAA-----NLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHH-----HHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHH-----HHHHHHHHHHHHHhhH
Confidence 4789999999999999999999999999999999999975 33456899999853 6788888888887653
No 53
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=1.4e-11 Score=92.64 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=59.7
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHH-hCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNS-SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
.+.++.||..+|++|||++|++|++|+++ ++++|+|+. .++.|+|+|+++.|.+|..+|..++.+.
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 599999852 3578999999999999999999999873
No 54
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=1.2e-11 Score=91.82 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=63.0
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHh-CCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
...+..+.||..+++.|||++|.+|++|+++| ||+|+|+.. ++..+.|+|.|...++++|+++|.+++.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~---------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE---------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT---------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC---------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999 999998532 24567899999999999999999999987
Q ss_pred C
Q 025165 220 N 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 3
No 55
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=1.8e-11 Score=90.97 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=64.5
Q ss_pred cCCCCCeEEEEEecCcccccccccCchhHHHHHhhh-CceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHH
Q 025165 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 44 ~~~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i 122 (257)
+...+.++..|.||.++++.|||++|.+|++|+++| ||+|+|++. +...+.|+|+|+.+ .+.+|..+|..++
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~iv 83 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSS-----DVEKAKKQLLHLA 83 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHH-----HHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999 999999975 45667899999853 6788888888888
Q ss_pred hcCC
Q 025165 123 LKDD 126 (257)
Q Consensus 123 ~~~~ 126 (257)
.+..
T Consensus 84 ~e~e 87 (95)
T 2ctj_A 84 EEKQ 87 (95)
T ss_dssp HHHS
T ss_pred hhhh
Confidence 6543
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=9.8e-11 Score=88.05 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=57.2
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhh-hCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREE-TKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~-tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
.++.+|.||+.+|+.|||++|++|++|+++ ++++|+|++ .++.|+|+|+++ .+.+|..+|..++.+
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~-----~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTE-----DVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHH-----HHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHH-----HHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 499999996 367899999954 677888888777754
No 57
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=7.8e-10 Score=81.05 Aligned_cols=68 Identities=26% Similarity=0.230 Sum_probs=58.3
Q ss_pred cceEEEEEeccCccceeecCCChhHHHHHHHhCCe-EEEeCCCCCCcccCCCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Q 025165 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT-IVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLR 218 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~ 218 (257)
..+...+.||.+.+|.+||++|++|++|+++|||+ |.|. +.+..|+|.| +.+++++|+++|..+-.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~------------eddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD------------EDTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE------------TTTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE------------cCCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 34678999999999999999999999999999998 9994 2358899999 88999999998866544
Q ss_pred cC
Q 025165 219 EN 220 (257)
Q Consensus 219 e~ 220 (257)
..
T Consensus 81 ~~ 82 (91)
T 2cpq_A 81 FI 82 (91)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 58
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.94 E-value=7.4e-10 Score=100.77 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=61.7
Q ss_pred CcceEEEEEeccCccceeecCCC--hhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 025165 140 VAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 216 (257)
.+.+++++.||..+|+.||||+| ++|++|+++|||+|+|+..+. +... .......|+|+|.+++|++|+..|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~-~~~~-~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSV-GGTT-PDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCC-CSSS-CCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcc-cccC-CcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 34679999999999999999999 999999999999999965430 0000 014567899999999999999999885
No 59
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.85 E-value=3.3e-09 Score=84.51 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=56.7
Q ss_pred EEEEEecCcccccccccCchhHHHHHhhhCc-eEEEcccccC---CCcc--EEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKA-TIKIADAIAR---HEER--VIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga-~I~i~~~~~~---~~er--vv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
..++.||.+.+|++|||+|.+||.|++.||+ +|+|...... ..++ .|+|+|+. .++++|..+|.+++..
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~-----~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTK-----DSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEH-----HHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCH-----HHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999997 9999854211 2344 48899995 4788999999888864
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.84 E-value=2.6e-09 Score=78.25 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=46.8
Q ss_pred CCCCeEEEEEecCcccccccccCchhHHHHHhhhCce-EEEcccccCCCccEEEecCCC
Q 025165 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT-IKIADAIARHEERVIIISSKD 103 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~-I~i~~~~~~~~ervv~I~G~~ 103 (257)
....+...|.||.+.+|.+||++|.+|++|+++||++ |+|.+ ++..|.|.|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~ 64 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGES 64 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESS
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECC
Confidence 3456889999999999999999999999999999998 99974 35789999954
No 61
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.78 E-value=2.8e-08 Score=77.86 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=60.6
Q ss_pred ceEEEEEeccC------ccceeecCCChhHHHHHHHhCCeEEEeCCCCCCccc---------CCCCCceEEEEEc-CHHH
Q 025165 142 ANTIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA---------SAHESDRVVQISG-DVPA 205 (257)
Q Consensus 142 ~~~~~l~Vp~~------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~---------~~~~~~r~V~I~G-~~~~ 205 (257)
..+.++.||.+ ++|.|||++|.+||+|+++|||+|.|..+....... ...+.+-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 35789999987 889999999999999999999999996421110000 0012366899999 5789
Q ss_pred HHHHHHHHHHHHhc
Q 025165 206 VLNALVEIGNQLRE 219 (257)
Q Consensus 206 v~~A~~~I~~~l~e 219 (257)
+++|+++|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.71 E-value=3.1e-08 Score=77.57 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=58.6
Q ss_pred CCeEEEEEecCc------ccccccccCchhHHHHHhhhCceEEEccccc----------------CCCccEEEecCCCCC
Q 025165 48 QDVLFRIIVPSR------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------------RHEERVIIISSKDND 105 (257)
Q Consensus 48 ~~~~~rilVP~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~----------------~~~ervv~I~G~~~~ 105 (257)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|..... ..++--|.|++...
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~- 83 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM- 83 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH-
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH-
Confidence 457889999988 8899999999999999999999999975210 01245678888643
Q ss_pred chhhHHHHHHHHHHHHHhc
Q 025165 106 NVVSDAENALQQIAALILK 124 (257)
Q Consensus 106 ~~~~~~~~a~~~I~~~i~~ 124 (257)
..+.+|+.+|..++.+
T Consensus 84 ---e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ---ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp ---HHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHhc
Confidence 4688999999999865
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=5e-08 Score=75.03 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=56.7
Q ss_pred eEEEEEeccC-------ccceeecCCChhHHHHHHHhCCeEEEeCCCCC---CcccCCCCCceEEEEEc-CHHHHHHHHH
Q 025165 143 NTIRLLIAGS-------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQL---PLCASAHESDRVVQISG-DVPAVLNALV 211 (257)
Q Consensus 143 ~~~~l~Vp~~-------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~---p~~~~~~~~~r~V~I~G-~~~~v~~A~~ 211 (257)
.+.+|.||-. ++|.|||++|.+||+|+++|||+|.|..+... +........+-.|.|.+ +.+++++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4678888754 78999999999999999999999999632110 00000002344677776 5889999999
Q ss_pred HHHHHHhc
Q 025165 212 EIGNQLRE 219 (257)
Q Consensus 212 ~I~~~l~e 219 (257)
+|.++|.+
T Consensus 92 ~Ie~Ll~~ 99 (119)
T 2yqr_A 92 LCENLLQT 99 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99999987
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=4.9e-08 Score=75.12 Aligned_cols=72 Identities=22% Similarity=0.128 Sum_probs=54.4
Q ss_pred CeEEEEEecCc-------ccccccccCchhHHHHHhhhCceEEEccccc----------CCCccEEEecCCCCCchhhHH
Q 025165 49 DVLFRIIVPSR-------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------RHEERVIIISSKDNDNVVSDA 111 (257)
Q Consensus 49 ~~~~rilVP~~-------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~----------~~~ervv~I~G~~~~~~~~~~ 111 (257)
.+..||.||.+ .+|.|||++|.+||+|+++|||+|.|..... ..++-.|.|.+... ..+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i 86 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGL 86 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHH
Confidence 35678888875 6999999999999999999999999973310 01334677877643 367
Q ss_pred HHHHHHHHHHHhc
Q 025165 112 ENALQQIAALILK 124 (257)
Q Consensus 112 ~~a~~~I~~~i~~ 124 (257)
.+|+.+|.+++.+
T Consensus 87 ~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 87 AAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 8888888888754
No 65
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.55 E-value=8.2e-08 Score=81.52 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=58.2
Q ss_pred ceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcC-----HHHHHHHHHHHHHH
Q 025165 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-----VPAVLNALVEIGNQ 216 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~-----~~~v~~A~~~I~~~ 216 (257)
....++.||.+.+|.|||++|.+|+.|+++|||+|++. ..++.|+|.|+ ++++++|..+|..+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~------------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID------------SETGEVWITSTKETEDPLAVWKARDIVLAI 100 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC------------TTTCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE------------cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999984 23577889886 69999999999999
Q ss_pred Hhc
Q 025165 217 LRE 219 (257)
Q Consensus 217 l~e 219 (257)
++.
T Consensus 101 ~rg 103 (219)
T 2e3u_A 101 GRG 103 (219)
T ss_dssp HTT
T ss_pred hcc
Confidence 854
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.49 E-value=2.2e-07 Score=73.33 Aligned_cols=75 Identities=17% Similarity=0.404 Sum_probs=55.0
Q ss_pred eEEEEEecCcc------cccccccCchhHHHHHhhhCceEEEcccccC------------------CCccEEEecCCCCC
Q 025165 50 VLFRIIVPSRQ------IGKVIGKEGHRIQKIREETKATIKIADAIAR------------------HEERVIIISSKDND 105 (257)
Q Consensus 50 ~~~rilVP~~~------vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~------------------~~ervv~I~G~~~~ 105 (257)
+.-||.||.+. +|.|||++|.++|+|+++|||+|.|-..-.. .+.--|.|++....
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46788999766 9999999999999999999999999843100 01125778875432
Q ss_pred -chhhHHHHHHHHHHHHHhc
Q 025165 106 -NVVSDAENALQQIAALILK 124 (257)
Q Consensus 106 -~~~~~~~~a~~~I~~~i~~ 124 (257)
.....+++|+..|..++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 2223578888989888864
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.43 E-value=3.1e-07 Score=72.44 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=57.0
Q ss_pred eEEEEEeccC------ccceeecCCChhHHHHHHHhCCeEEEeCCCCCC------------cccCCCCCceEEEEEcC-H
Q 025165 143 NTIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP------------LCASAHESDRVVQISGD-V 203 (257)
Q Consensus 143 ~~~~l~Vp~~------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~~~~~~~~r~V~I~G~-~ 203 (257)
.+.++.||.. ++|.|||++|.++|+|+++|||+|.|-.+...- .... .+..--|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~-~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH-LNEDLHVLITVEDA 80 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHT-TTSCCEEEEEECSC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccc-cCCCcEEEEEecCc
Confidence 3567888854 599999999999999999999999997432110 0000 012237889984 3
Q ss_pred H-----HHHHHHHHHHHHHhcCCC
Q 025165 204 P-----AVLNALVEIGNQLRENPP 222 (257)
Q Consensus 204 ~-----~v~~A~~~I~~~l~e~~~ 222 (257)
+ .+.+|+++|.++|...++
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p~~e 104 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVPAAE 104 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred hhhHHHHHHHHHHHHHHHCCCCCc
Confidence 3 789999999999986554
No 68
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.39 E-value=5.3e-07 Score=74.86 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=61.4
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHh
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS-----GDVPAVLNALVEIGNQLR 218 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~-----G~~~~v~~A~~~I~~~l~ 218 (257)
..++.||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|..+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id------------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD------------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE------------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE------------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999994 346788999 999999999999999888
Q ss_pred cCCCCC
Q 025165 219 ENPPRQ 224 (257)
Q Consensus 219 e~~~~~ 224 (257)
..+..+
T Consensus 73 gf~~e~ 78 (191)
T 1tua_A 73 GFPPEK 78 (191)
T ss_dssp TCCHHH
T ss_pred CCCHHH
Confidence 765443
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.31 E-value=6.5e-07 Score=86.78 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCccc
Q 025165 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA 188 (257)
Q Consensus 109 ~~~~~a~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 188 (257)
..+.+++..|++.+.+........ ..........+.||.+.+|.|||+||.+||.|+++|||+|.|.
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~----~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~--------- 603 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRAS----RKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV--------- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSS----CCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---------
Confidence 356677777777776543221110 0112235678999999999999999999999999999999983
Q ss_pred CCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 025165 189 SAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (257)
Q Consensus 189 ~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 217 (257)
.+..|.|.|. .+.+++|+++|..++
T Consensus 604 ----d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 ----DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp ----SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 2467999986 678999999987654
No 70
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=98.16 E-value=1.8e-06 Score=68.47 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=74.1
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCCC
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~~ 129 (257)
-.+.|+|+...+|+.||++|++|+.|+++.|-+|++-... ++ + ...|...+.......
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s---~d--------~-----------~~fI~naLsPA~V~~ 93 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS---SD--------L-----------ERIVKNLFPGVKIES 93 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC---SS--------H-----------HHHHHHHSTTSCEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC---CC--------H-----------HHHHHHhcCCceEEE
Confidence 4689999999999999999999999999999999988542 11 0 112222221110000
Q ss_pred chhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEe
Q 025165 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179 (257)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~ 179 (257)
.. .... .+.....+.||.++.+..|||+|.+++-..+-||.+|.|.
T Consensus 94 V~---i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 94 IN---VRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EE---EEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EE---Eeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00 0000 1234688999999999999999999999999999988874
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.05 E-value=1.4e-05 Score=62.11 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=58.5
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~ 218 (257)
...+.+.+..++.|||++|+.|+.|+..|++.|++..-+. ++...|+|.|++..-..|..+|..+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s--------~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP--------ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT--------TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC--------CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999965321 457889999999999999999887654
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.86 E-value=7.5e-06 Score=80.34 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025165 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~a~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+........ ..........+.||.+.++.|||+||.+||.|+++||++|.|.
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~----~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-------- 606 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRAD----VGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-------- 606 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSS----CCSSCCC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh----hcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE--------
Confidence 3456777788888876543321111 1112234578889999999999999999999999999999983
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcCCCCC
Q 025165 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQLRENPPRQ 224 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~e~~~~~ 224 (257)
.+..|.|.+. .+++++|+.+|..++.+....+
T Consensus 607 -----ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~ 639 (726)
T 4aid_A 607 -----DDGVVKVSASDGAKIKAAIDWIKSITDEAEVGK 639 (726)
T ss_dssp ------------CCSCHHHHHHHHHC------------
T ss_pred -----CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCc
Confidence 2455777775 7899999999999887655444
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.80 E-value=9.1e-06 Score=78.78 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=50.4
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHH
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~ 121 (257)
.-...|.||.+.+|.|||+||.+||+|+++|||+|+|.+ +..|.|.+... ..+.+|+.+|..+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~----~~~~~A~~~I~~i 628 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTP----SAMHEARDFITEI 628 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSH----HHHHHHHHHTTC-
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCH----HHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999984 35688988642 2456666665443
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.46 E-value=0.00028 Score=54.80 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=51.8
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHH
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i 122 (257)
-.+.|.|.+..++.|+|++|+.|+.|+..|++.|++..-.+ +.+--|+|.|++. .=.++..+|..+.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~-----~Q~rak~MI~sLA 122 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPP-----FRRDVDRMLTDLA 122 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHH-----HHHHHHHHHHHHH
Confidence 45777889999999999999999999999999999996633 4567799999853 2234445554443
No 75
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.25 E-value=4.5e-05 Score=65.47 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=67.2
Q ss_pred cccccccccCchhHHHH-HhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhcc
Q 025165 59 RQIGKVIGKEGHRIQKI-REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (257)
Q Consensus 59 ~~vg~IIGkgG~~Ik~I-~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~~~~~~~~~~ 137 (257)
+-+|+.||++|++|+.| ++-.|-+|+|-... ++ ....|...+......... .
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s---~d-------------------p~~fi~nalsPA~V~~V~-----i 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD---DD-------------------PARFVANALSPAKVVSVS-----V 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTTTSCCSEEE-----E
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec---CC-------------------HHHHHHhccCCcceEEEE-----E
Confidence 34999999999999999 77788888887542 11 012222222211111000 0
Q ss_pred CCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCC
Q 025165 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183 (257)
Q Consensus 138 ~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~ 183 (257)
.........+.||.++.+.-|||+|.|++-..+-||.+|.|.+..+
T Consensus 179 ~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 179 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 0001136899999999999999999999999999999999976443
No 76
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.15 E-value=0.00055 Score=61.89 Aligned_cols=105 Identities=24% Similarity=0.284 Sum_probs=72.2
Q ss_pred EEEEEecC-----cccccccccCchhHHHHHhhh-CceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 51 LFRIIVPS-----RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 51 ~~rilVP~-----~~vg~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
-.++-|-+ +-+|+.||++|++|+.|.++. |-+|+|-.. +++ -...|...+..
T Consensus 236 RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~---s~d-------------------p~~fi~nalsP 293 (366)
T 1k0r_A 236 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY---DDD-------------------PARFVANALSP 293 (366)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC---CSS-------------------HHHHHHHHTTT
T ss_pred eEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEc---CCC-------------------HHHHHHHhcCC
Confidence 34566655 569999999999999999998 888888754 111 01222222221
Q ss_pred CCCCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCC
Q 025165 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182 (257)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~ 182 (257)
....... .. ........+.||.++.+..|||+|.+++-..+-||.+|.|.+..
T Consensus 294 A~V~~V~---~~--~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 294 AKVVSVS---VI--DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp SCCSEEE---EE--ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cceeEEE---EE--cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 1111000 00 01124789999999999999999999999999999999997643
No 77
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.06 E-value=0.00012 Score=71.75 Aligned_cols=64 Identities=28% Similarity=0.426 Sum_probs=8.8
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~ 123 (257)
-...+.||.+.++.|||+||.+||+|+++||++|+|.+. ..|.|.+... ..+.+|+.+|..++.
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~----~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDG----AKIKAAIDWIKSITD 633 (726)
T ss_dssp C-------------------------------------------------CCSCH----HHHHHHHHC------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCH----HHHHHHHHHHHHHhh
Confidence 356788899999999999999999999999999999853 4577877642 355666666666654
No 78
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.70 E-value=0.003 Score=56.73 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=65.9
Q ss_pred cccccccccCchhHHHHHhhh-CceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhcc
Q 025165 59 RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (257)
Q Consensus 59 ~~vg~IIGkgG~~Ik~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~~~~~~~~~~~~~ 137 (257)
+-+|+.||.+|.+|+.|.++. |-+|++-... ++ -...|...|........ .-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s---~d-------------------~~~fi~nal~Pa~v~~v-----~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS---DD-------------------PKQLIANALAPATVIEV-----EI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTCSSCCSEE-----EE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC---CC-------------------HHHHHHHhcCccEEEEE-----EE
Confidence 348999999999999999997 7777776441 11 01222232311111000 00
Q ss_pred CCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCC
Q 025165 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181 (257)
Q Consensus 138 ~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~ 181 (257)
.........+.||.++.+.-|||+|.|++-..+-||.+|.|.+.
T Consensus 298 ~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00112478999999999999999999999999999999999653
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.64 E-value=0.0006 Score=67.06 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCccc
Q 025165 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA 188 (257)
Q Consensus 109 ~~~~~a~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 188 (257)
..+.+++..|.+.+.+.........+ ........+.||.+.++.+||++|.+|+.|.++||+.|.|.
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~----~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~--------- 596 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDIS----EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE--------- 596 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhcc----ccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec---------
Confidence 34566677777777554322111100 11223567889999999999999999999999999999873
Q ss_pred CCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcCCCC
Q 025165 189 SAHESDRVVQISGD-VPAVLNALVEIGNQLRENPPR 223 (257)
Q Consensus 189 ~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~e~~~~ 223 (257)
.+..|.|.+. .+.+.+|.+.|..++.+....
T Consensus 597 ----~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG 628 (723)
T 3cdi_A 597 ----DDGTVKIAATDGEKAKHAIRRIEEITAEIEVG 628 (723)
T ss_dssp ------------------------------------
T ss_pred ----CCccEEEecCCHHHHHHHHHHHHHHhhhhhcC
Confidence 2456777664 567788888887776554333
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.98 E-value=0.00048 Score=68.06 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025165 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~a~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+..... ...+ ........+.||.+.+|.+||++|.+||.|+++||+.|.|.
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~-~~~~----~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-------- 634 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTP-DEMS----PNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-------- 634 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSC-CCCC----TTSCBCCCC------------------CTTCCCCCSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cccc----ccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec--------
Confidence 3456667777777776533222 1111 11223456789999999999999999999999999999983
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 025165 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 217 (257)
.+..|.|.+. ....++|.+.|..+.
T Consensus 635 -----~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 635 -----DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----------CCCBSSHHHHCC---------
T ss_pred -----CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 2456777764 567777776776655
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.59 E-value=0.006 Score=59.96 Aligned_cols=64 Identities=31% Similarity=0.519 Sum_probs=0.0
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCCCCchhhHHHHHHHHHHHHH
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i 122 (257)
.....+.||.+.++.+||+||.+|+.|.++||+.|++.+ +..+.|.+.... .+.+|..+|..++
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~----~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGE----KAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHH----HHHHHHHHHHHHh
Confidence 345677889999999999999999999999999998884 345667665432 3444555444443
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.48 E-value=0.0057 Score=60.43 Aligned_cols=46 Identities=37% Similarity=0.630 Sum_probs=16.6
Q ss_pred EEEEecCcccccccccCchhHHHHHhhhCceEEEcccccCCCccEEEecCCC
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~ervv~I~G~~ 103 (257)
..|.||.+.+|.+||++|.+||+|+++||+.|+|.+ +..|.|+...
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~ 645 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAAD 645 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSS
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCC
Confidence 456789999999999999999999999999999884 4557777754
No 83
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.69 E-value=0.074 Score=41.76 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=34.9
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHhCCeEEEeC
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~ 180 (257)
...++|+...+|..||++|++|+.|+++.|-+|.+..
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 6889999999999999999999999999999999875
No 84
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=90.96 E-value=0.21 Score=42.72 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=36.7
Q ss_pred CeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc
Q 025165 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~ 88 (257)
.....+.||.+..+..|||+|.|++.-.+-||.+|+|...
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 4578899999999999999999999999999999999754
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.38 E-value=0.25 Score=44.18 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEcc
Q 025165 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~ 87 (257)
++.....+.||.+..+..|||+|.|++.-.+-||.+|+|..
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 34567899999999999999999999999999999999863
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=88.43 E-value=0.31 Score=43.95 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCeEEEEEecCcccccccccCchhHHHHHhhhCceEEEccc
Q 025165 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~ 88 (257)
+.....+.||.+..+..|||+|.|++-..+-||.+|+|...
T Consensus 305 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 305 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 35678999999999999999999999999999999999744
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=86.94 E-value=0.35 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.7
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhhC
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~tg 80 (257)
-++.|.+..+..|.+|||.|.|++.||--+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3566777889999999999999999998874
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=81.67 E-value=0.64 Score=33.46 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.0
Q ss_pred EEEEEecCcccccccccCchhHHHHHhh
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~ 78 (257)
.+++.|....-|.|||++|..|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4677888889999999999999888765
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=75.98 E-value=1.1 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=23.4
Q ss_pred EEEEEeccCccceeecCCChhHHHHHH
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
..++.|....-|.|||++|..|++|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 578888888899999999999988763
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.47 E-value=1.6 Score=34.33 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.1
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHh
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~t 172 (257)
++.+.+-.+..|.||||.|.+++.||--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 57777889999999999999999998544
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=64.37 E-value=21 Score=29.68 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=44.4
Q ss_pred EEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 025165 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 216 (257)
.-+.++...+.+++|++++.++.|.+.+++.|-+- . .-.|-|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG------------~-NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG------------Q-NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC------------T-TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE------------C-CcEEEEeCCchhHHHHHHHHHHH
Confidence 44578888999999999999999999999999872 2 34455889877555555445444
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=62.04 E-value=2.7 Score=35.27 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=27.8
Q ss_pred EEEEEecCcccccccccCchhHHHHHhhhCceEE
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~tga~I~ 84 (257)
.+.|.+.....|.+|||.|.+++.||.-+..-++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 4566667788999999999999999998875443
No 93
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=58.17 E-value=22 Score=29.56 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=45.4
Q ss_pred EEEEeccCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcC
Q 025165 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~e~ 220 (257)
.-+.++...+.+++|++|..+..|.+.+++.|-+- . +..|-|.+ ++.....+...|..+=.++
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG------------~-NG~IWi~~~~~~~~~~~~~ai~~~e~~~ 213 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA------------R-NGRIHLECPNEDLEAIAVMAIKIIDEEA 213 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE------------T-TTEEEEECSCHHHHHHHHHHHHHHHHCS
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe------------C-CCEEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 45678888999999999999999998999999883 2 34566776 5555555555555443333
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=57.45 E-value=4.3 Score=34.31 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.4
Q ss_pred EEEEEecCcccccccccCchhHHHHHhhh
Q 025165 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGkgG~~Ik~I~~~t 79 (257)
.+++.|....-|.|||++|..|++|++..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 36777788889999999999999887663
No 95
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.83 E-value=4.2 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.8
Q ss_pred EEEEecCcccccccccCchhHHHHHhh
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~ 78 (257)
+++.|....-|.|||++|..|++|+++
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 566777788999999999999988664
No 96
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=55.48 E-value=5.6 Score=33.67 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=25.2
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhh
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|..|++|+++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 346777888899999999999999987763
No 97
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=53.53 E-value=6.9 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=27.5
Q ss_pred CeEEEEEecCc-ccccccccCchhHHHHHhh--------hCceEEEc
Q 025165 49 DVLFRIIVPSR-QIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (257)
Q Consensus 49 ~~~~rilVP~~-~vg~IIGkgG~~Ik~I~~~--------tga~I~i~ 86 (257)
.+...|+|..+ +.+.||||+|+.||+|..+ +|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 36667777776 4788999999999988544 56665543
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=53.09 E-value=4.4 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=25.1
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhh
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|+.|++|+++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 346788888999999999999999887653
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=52.92 E-value=6.7 Score=33.82 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=27.0
Q ss_pred eEEEEEeccC-ccceeecCCChhHHHHH--------HHhCCeEEE
Q 025165 143 NTIRLLIAGS-QAGCLIGMSGQNIEKLR--------NSSGATIVI 178 (257)
Q Consensus 143 ~~~~l~Vp~~-~vG~iIGk~G~~Ik~I~--------~~tga~I~i 178 (257)
+...++|..+ +.+.|||++|+.||+|. +-+|++|.+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4556667764 66999999999999874 456777765
No 100
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=48.92 E-value=4.5 Score=33.42 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.1
Q ss_pred EEEEecCcccccccccCchhHHHHHhh
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~ 78 (257)
+++.|....-|.|||++|+.|++|+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667778899999999999888764
No 101
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=48.43 E-value=7.1 Score=32.93 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.2
Q ss_pred EEEEEeccCccceeecCCChhHHHHHH
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
..++.|....-|.|||++|+.|++|+.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 467888888899999999999988763
No 102
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.82 E-value=7.1 Score=32.27 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=27.7
Q ss_pred EEEEEeccCccceeecCCChhHHHHH----HHhC---CeEEEe
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSG---ATIVIL 179 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tg---a~I~i~ 179 (257)
..++.|....-|.|||++|+.|++|+ +.++ .+|.+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 46777888888999999999998875 4565 556653
No 103
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.74 E-value=12 Score=31.38 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=23.9
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHH
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
...++.|....-|.|||++|+.|++|+.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3578888888999999999999988763
No 104
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=47.47 E-value=5.2 Score=33.86 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred eEEEEEecCcccccccccCchhHHHHHhhh
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|..|++|+++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 456777888899999999999999988764
No 105
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=47.43 E-value=9 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=24.2
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHH
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
...++.|....-|.|||++|+.|++|+.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 74 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQ 74 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHH
Confidence 3578888888999999999999998864
No 106
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=45.83 E-value=5.2 Score=33.65 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.2
Q ss_pred EEEEecCcccccccccCchhHHHHHhh
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~ 78 (257)
+++.|....-|.|||++|+.|++|+++
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 556667778899999999999888764
No 107
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=44.15 E-value=30 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=33.6
Q ss_pred ccCchhHHHHHhhhCceEEEccc---cc--------------CCCccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 66 GKEGHRIQKIREETKATIKIADA---IA--------------RHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 66 GkgG~~Ik~I~~~tga~I~i~~~---~~--------------~~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
|+||.++++. +|.+++.++-. .| -+.+.+++|+....-....+-++|++.+.++|.+
T Consensus 24 GpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~ 97 (108)
T 2jva_A 24 GAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVN 97 (108)
T ss_dssp TCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHH
Confidence 8888888764 45556665211 11 0124457777665543344567788888887754
No 108
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=43.59 E-value=8 Score=32.61 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=22.0
Q ss_pred EEEEecCcccccccccCchhHHHHHhh
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~ 78 (257)
+++.|-...-|.|||++|+.|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 445566678899999999999988765
No 109
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=43.47 E-value=7.1 Score=32.65 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=27.8
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHHhCCeEE
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~ 177 (257)
.+.+.+.....|.|||+.|.+++.||.-+...++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 4666677888999999999999999977765544
No 110
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.83 E-value=7 Score=32.52 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=22.3
Q ss_pred EEEEecCcccccccccCchhHHHHHhhh
Q 025165 52 FRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 52 ~rilVP~~~vg~IIGkgG~~Ik~I~~~t 79 (257)
+++.|....-|.|||++|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4555666778999999999999987664
No 111
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=39.89 E-value=7.5 Score=32.04 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=26.7
Q ss_pred EEEEEeccCccceeecCCChhHHHHH----HHhCCeEEE
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSGATIVI 178 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tga~I~i 178 (257)
..++.|....-|.|||++|+.|++|+ +.++.++++
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 35667777788999999999998875 456766554
No 112
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.32 E-value=8.5 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=24.4
Q ss_pred eEEEEEeccCccceeecCCChhHHHHHHH
Q 025165 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~ 171 (257)
...++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35778888888999999999999988753
No 113
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=37.04 E-value=8.6 Score=32.29 Aligned_cols=34 Identities=35% Similarity=0.661 Sum_probs=25.5
Q ss_pred EEEEEeccCccceeecCCChhHHHHH----HHhCCeEE
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSGATIV 177 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tga~I~ 177 (257)
.+++.|....-|.|||++|+.|++|+ +.++..++
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 100 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 45677777788999999999998876 45665433
No 114
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=36.39 E-value=7.2 Score=33.63 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEec-cCccceeecCCChhHHHHH--------HHhCCeEEE
Q 025165 146 RLLIA-GSQAGCLIGMSGQNIEKLR--------NSSGATIVI 178 (257)
Q Consensus 146 ~l~Vp-~~~vG~iIGk~G~~Ik~I~--------~~tga~I~i 178 (257)
.+.|. .++.+.|||++|+.||+|. +-.|+++.+
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 44554 3567999999999998774 556777765
No 115
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=35.98 E-value=13 Score=31.40 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=22.1
Q ss_pred EEEEEeccCccceeecCCChhHHHHHHH
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNS 171 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~ 171 (257)
.+++.|....-|.|||++|+.|++|+..
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3456666777899999999999888643
No 116
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=33.94 E-value=9.4 Score=32.88 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=23.7
Q ss_pred EEEEecC-cccccccccCchhHHHHHhh--------hCceEEEc
Q 025165 52 FRIIVPS-RQIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (257)
Q Consensus 52 ~rilVP~-~~vg~IIGkgG~~Ik~I~~~--------tga~I~i~ 86 (257)
..+.|.. ++.+.||||+|+.||+|..+ +|++|.+.
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 3445543 44688999999999988544 56666543
No 117
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=33.37 E-value=28 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEEecCcccccccccCchhHHHH-Hhhh--------Cc---eEEEcc
Q 025165 50 VLFRIIVPSRQIGKVIGKEGHRIQKI-REET--------KA---TIKIAD 87 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGkgG~~Ik~I-~~~t--------ga---~I~i~~ 87 (257)
+...+.||.+..|.+|| .+|+++ ++++ |+ .+++.+
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 45678899999999999 699995 9999 88 455554
No 118
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=32.45 E-value=69 Score=22.83 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CChhHHHHHHHhCCeEEEeCCCC--CCcccCCCCCceEEEEEcCHHHHHHHHHHHHH
Q 025165 161 SGQNIEKLRNSSGATIVILAPNQ--LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215 (257)
Q Consensus 161 ~G~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~ 215 (257)
....|.++-+++|+.++|....- +-.. .-..=+|.+.|+.+++.+|+..+.+
T Consensus 34 ~~PiIs~l~~~~~v~vnIL~g~I~~i~~~---~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 34 DAPLLSETARRFNVNNNIISAQMDYAGGV---KFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp TCCHHHHHHHHSCCEEEEEEEEEEEETTE---EEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCCEEEEEEEeEEECCe---eEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 34579999999999999875321 0000 0123478999999999988777654
No 119
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.90 E-value=11 Score=31.18 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.5
Q ss_pred EEEEEeccCccceeecCCChhHHHHHH
Q 025165 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
.+++.|....-|.|||++|..|++|++
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~ 97 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKI 97 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHH
Confidence 355666677789999999999988864
No 120
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=31.43 E-value=62 Score=24.75 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=34.6
Q ss_pred ccCchhHHHHHhhhCceEEEccc---ccC--------------CCccEEEecCCCCCchhhHHHHHHHHHHHHHhcC
Q 025165 66 GKEGHRIQKIREETKATIKIADA---IAR--------------HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 66 GkgG~~Ik~I~~~tga~I~i~~~---~~~--------------~~ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~~ 125 (257)
|+||.++++. +|.|.+.++-. .|. +.+..++|+....-....+-..|+..+.++|.+.
T Consensus 24 GpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a 98 (140)
T 4dh9_Y 24 GAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKEL 98 (140)
T ss_dssp SSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHh
Confidence 8999999854 67777776411 111 1123455655544333445678888888887653
No 121
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=29.71 E-value=33 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=20.7
Q ss_pred ccEEEecCCCCCchhhHHHHHHHHHHHHHhc
Q 025165 94 ERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 94 ervv~I~G~~~~~~~~~~~~a~~~I~~~i~~ 124 (257)
+.+++|+....-....+-++|++++.++|.+
T Consensus 75 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~ 105 (112)
T 1j26_A 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAE 105 (112)
T ss_dssp SSEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCccCHHHHHHHHHHHHHHHHHH
Confidence 4457777766544445667888888888764
No 122
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=26.87 E-value=56 Score=25.90 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=30.9
Q ss_pred EEEEeccCccceeecCCCh-hHHHHHHHhCCeEEEe
Q 025165 145 IRLLIAGSQAGCLIGMSGQ-NIEKLRNSSGATIVIL 179 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~-~Ik~I~~~tga~I~i~ 179 (257)
.-+.|+...+.+++|+.|+ .++.|.+.+++.|-+-
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG 128 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG 128 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE
Confidence 5678999999999999888 8999999999999883
Done!