BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025166
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 20/185 (10%)
Query: 55 VYVAVGKDDLHVLK------WALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
++VAV K HV K WAL + + G +I L+HV P I + + +E
Sbjct: 47 IFVAVDK---HVAKSKSTLIWALQN--TGGKKICLIHVHQPSQMIPLMGAKFPVGAVKEE 101
Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVM 168
+VRV+ +E + +L Y+R+C + V E M +E ++ I+ LIS + LVM
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQ-RGVRAEKMFIEMESIENGIVQLISELGIRKLVM 160
Query: 169 GTKLSPRSRLFTKKLS-----KGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSS 223
G + R ++++++ K FV++ AP C++ G + + + + +
Sbjct: 161 G---AAADRHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYA 217
Query: 224 SPSPS 228
SP PS
Sbjct: 218 SPRPS 222
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 23/158 (14%)
Query: 55 VYVAVGKDDLHV---LKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
+YVAV + DL L WA+ + S G +VHV P+ G + +++++R
Sbjct: 36 IYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPIP------GEM----FHEQKLR 83
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTK 171
+Y E++ +N +KY+++C QVT E + +E+ + K IL LIS VT LVMG
Sbjct: 84 LYRKEKDKAHKNS-EKYLQICRQM-QVTAEIIYIETDSVEKGILQLISQRGVTKLVMGAA 141
Query: 172 ----LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205
S R R K K ++ + AP C + +G
Sbjct: 142 ADRHYSMRMRDLKSK--KAIYIHREAPATCLIWFTCNG 177
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 65 HVLKWALDHAVSPGARIY-LVHVFSPVTYINTPVG-RLARSQLNQEQVRVYVNEENNRRR 122
+V+ WAL+ + G + L++V PV+YI TP+G +A S+L ++ V Y E +
Sbjct: 36 YVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVVSAYKQELDWSAN 95
Query: 123 NLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKK 182
+L+ Y ++ + ++V VE +L++S A AI + I+ VT LV+G L F++K
Sbjct: 96 EMLRPYKKMF-ERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMSL---RGFFSRK 151
Query: 183 LSKGEFVKKNAPDYCEVTIVHDGK 206
+ + P +C V ++ GK
Sbjct: 152 IDMSSLIATAVPRFCTVYVISKGK 175
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
+YVAV +D L WAL + +I+L+HV P + + T RL +S+++ Q
Sbjct: 5 IYVAVNQDVRESKKTLLWALKNLQV--KKIFLLHVHLPFS-LTTSSSRLEQSEIDAIQ-- 59
Query: 112 VYVNEENNRRRNLLQKYIRLC--NDAKQVTVETMLVESKATAKAILDLISVANVTSLVMG 169
+ E N N L KY +C + V+T ++ + I++LI +T+LVMG
Sbjct: 60 ---DSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMG 116
Query: 170 TKLSPR-SRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELAR-SSSPSP 227
P SR + K E+V ++AP C++ + GK + Q+ L S S S
Sbjct: 117 AAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLI--KQRERSFYLGNPSDSFSE 174
Query: 228 SSPGTGRPQVKGKSR 242
S +P KG+ R
Sbjct: 175 FSTSAEKPISKGRRR 189
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 65 HVLKWALDHAVSPG-ARIYLVHVFSPVTYINTPVGR-LARSQLNQEQVRVYVNEENNRRR 122
+V+ WA++ + G L+H+ +T + TP+G + S++ + V Y E +
Sbjct: 34 YVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSE 93
Query: 123 NLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKK 182
+L+ Y +L ++V VE +++ES A AI + ++ ++ +V+G S RS F++K
Sbjct: 94 EMLKPYTKLFV-RRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGG--SSRS-FFSRK 149
Query: 183 LSKGEFVKKNAPDYCEVTIVHDGK 206
+ P++C V +V GK
Sbjct: 150 ADICSVISALMPNFCTVYVVSKGK 173
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 35/158 (22%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFS-PVTYINTPVGRLARSQLNQEQV 110
VY+AVG D + WAL + I L+H+ + ++ TP G+L S +++E++
Sbjct: 22 VYIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQDFVYTPFGKLPASSVSEEKL 81
Query: 111 RVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGT 170
+V E+ + LL KYI C ++V +L +A
Sbjct: 82 QVLRKYEDQKIDKLLSKYITFCGKVCPLSVNFVLFGKSKSA------------------- 122
Query: 171 KLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKV 208
+S +V +N P++CE I+ GK V
Sbjct: 123 ------------ISGSFYVYQNKPEFCEFYIICGGKMV 148
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 55 VYVAVGKD--DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRV 112
+YVAVG D + L WA+ + + G +VHV P+
Sbjct: 16 IYVAVGSDLGNKSTLVWAIQN--TGGKEFCIVHVHQPL---------------------- 51
Query: 113 YVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 172
+E + + +L KY++ C QV E + ++ ++ K I+ LIS NV LVMG
Sbjct: 52 -YRKEKEKTQKILDKYLQKCRQM-QVCAEMIHIKMESVEKGIIQLISERNVKKLVMGAAS 109
Query: 173 SPRSRLFTKKL--SKGEFVKKNAPDYCEVTIVHDG 205
R + L +K ++++ AP C + G
Sbjct: 110 DTRYSMRMADLLSTKAIYIRQEAPATCCIWFTCKG 144
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 39/198 (19%)
Query: 57 VAVGKDDLHV------------LKWALDHAVSPGAR-IYLVHVFSPVTYINTPVGRLARS 103
+A+G D +HV L WAL + GA+ + ++HV+ P T +P R
Sbjct: 5 MAMGNDVVHVAVKSDVRESRSTLLWALRNL---GAKKVCILHVYQPKT--ASPAAR---- 55
Query: 104 QLNQEQVRVYVNEENNRRRNLLQKYIRLCND--AKQVTVETMLVESKATAKAILDLISVA 161
+L + + +Y L Y C + + +E + IL+LI +
Sbjct: 56 KLEELEAIMY---------ETLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILELIHES 106
Query: 162 NVTSLVMGTKLS--PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAEL 219
+ LVMG ++F K K ++V ++AP CEV + DG + EA L
Sbjct: 107 KIKKLVMGAASDHHYSEKMFDLKSRKAKYVYQHAPSSCEVMFMCDGHLIY----TKEANL 162
Query: 220 ARSSSPSPSSPGTGRPQV 237
+ S G +P++
Sbjct: 163 EDCMGETESEAGQSKPKL 180
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
++VAV +D + WA + G +I L++V + +L + V+
Sbjct: 17 IFVAVAEDVERSKTTVLWAARNF--SGKKICLLYVHRTARAASWTHKKLVGGSFKKHDVK 74
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTK 171
V E + L+ Y++L ++ ++ + + + + + I++LI+ + LVMG
Sbjct: 75 VIERVEKPKVDELMNSYLQLLSET-EIQTDKLCIAGQNIEECIVELIARHKIKWLVMGAA 133
Query: 172 LSP--RSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205
++ K K FV K APD C + + G
Sbjct: 134 SDKHYSWKMTDLKSKKAIFVCKKAPDSCHIWFLCKG 169
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 103 SQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVT--VETMLVESKATAKAILDLISV 160
S L Q ++ E R + L KY +C D + V+ + + + I++LI
Sbjct: 6 SGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQ 65
Query: 161 ANVTSLVMGTKLSPRSRLFTKKL-----SKGEFVKKNAPDYCEVTIVHDGKKV 208
N+ L+MG +++ + +K ++V ++AP C + +V +G +
Sbjct: 66 NNIKKLIMGATADSH---YSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLI 115
>sp|Q974N4|SYL1_SULTO Leucine--tRNA ligase 1 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=leuS1 PE=3 SV=1
Length = 945
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 82 YLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVE 141
YL + V +++ +G+ A E+V +YVN++NN R LL+K I D K ++
Sbjct: 807 YLRSIIEDVNRLSSELGKEA------EKVVIYVNDDNNLRE-LLKKAIIAIKDRK--SLR 857
Query: 142 TMLVESKATAKAILDLISVANV 163
++E+ K + +ANV
Sbjct: 858 DFMIENNVDDKTARRIYELANV 879
>sp|P06684|CO5_MOUSE Complement C5 OS=Mus musculus GN=C5 PE=1 SV=2
Length = 1680
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 141 ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDY 196
++ L+E+ +K+ L VA SL G + PR RL L K FVK + P Y
Sbjct: 1176 DSFLLENTLPSKSTFTLAIVAYALSL--GDRTHPRFRLIVSALRKEAFVKGDPPIY 1229
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 136 KQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNA-- 193
++V ++ M++ES A AI + ++ LV+G + S +F+ KL + + A
Sbjct: 85 REVQLDIMVLESDDIADAISKAVQDHGISELVIG---ASSSIIFSWKLKRSNLSSRIADA 141
Query: 194 -PDYCEVTIVHDGK 206
P +C V ++ GK
Sbjct: 142 TPRFCSVHVISKGK 155
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 173 SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDG---QKVAEAELARSSSPSPSS 229
SP+ LF ++ EF + + + + I+ + + G Q+V E R P SS
Sbjct: 875 SPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSS 934
Query: 230 PGTGRPQVKGK 240
P T + + GK
Sbjct: 935 PATLKSLLTGK 945
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,299,168
Number of Sequences: 539616
Number of extensions: 3635671
Number of successful extensions: 16499
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 16188
Number of HSP's gapped (non-prelim): 194
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)