Query 025166
Match_columns 257
No_of_seqs 321 out of 1296
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 2.5E-26 8.5E-31 183.4 17.0 140 50-203 3-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 5.2E-26 1.8E-30 185.1 17.7 148 51-206 4-161 (162)
3 3idf_A USP-like protein; unive 99.9 3.9E-25 1.3E-29 175.0 15.5 134 52-203 1-138 (138)
4 3fg9_A Protein of universal st 99.9 6.3E-25 2.2E-29 177.8 16.3 137 50-203 13-156 (156)
5 2dum_A Hypothetical protein PH 99.9 4.9E-25 1.7E-29 180.9 15.6 151 51-207 4-159 (170)
6 3hgm_A Universal stress protei 99.9 4.7E-26 1.6E-30 181.7 9.2 142 51-202 1-147 (147)
7 1tq8_A Hypothetical protein RV 99.9 3.1E-25 1.1E-29 182.6 13.0 141 49-206 14-160 (163)
8 2z08_A Universal stress protei 99.9 1.1E-24 3.8E-29 172.7 12.7 134 51-203 1-137 (137)
9 2gm3_A Unknown protein; AT3G01 99.9 3.3E-24 1.1E-28 176.9 15.2 148 51-206 4-165 (175)
10 3dlo_A Universal stress protei 99.9 3.9E-24 1.3E-28 174.6 15.0 128 51-203 23-155 (155)
11 3tnj_A Universal stress protei 99.9 2.7E-24 9.1E-29 172.5 13.3 141 51-206 5-149 (150)
12 3fdx_A Putative filament prote 99.9 9E-24 3.1E-28 167.9 12.5 137 52-203 1-143 (143)
13 1jmv_A USPA, universal stress 99.9 7.6E-23 2.6E-27 162.4 10.0 136 51-206 1-140 (141)
14 3olq_A Universal stress protei 99.9 1.4E-21 4.7E-26 175.0 15.4 143 51-205 6-151 (319)
15 3ab8_A Putative uncharacterize 99.9 3.2E-21 1.1E-25 168.8 13.3 145 53-205 1-150 (268)
16 3cis_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 170.6 15.4 140 50-206 17-163 (309)
17 3loq_A Universal stress protei 99.9 2.2E-21 7.4E-26 172.5 11.2 141 50-206 20-164 (294)
18 1q77_A Hypothetical protein AQ 99.8 1.6E-20 5.5E-25 148.6 13.7 130 51-203 3-138 (138)
19 3mt0_A Uncharacterized protein 99.8 2.5E-20 8.4E-25 165.5 13.8 135 51-205 133-277 (290)
20 3cis_A Uncharacterized protein 99.8 5.9E-20 2E-24 164.5 15.1 134 51-205 170-307 (309)
21 3olq_A Universal stress protei 99.8 3.9E-20 1.3E-24 165.5 11.9 141 51-206 155-307 (319)
22 3loq_A Universal stress protei 99.8 8.4E-20 2.9E-24 162.2 13.3 123 50-206 168-292 (294)
23 3mt0_A Uncharacterized protein 99.8 7.2E-20 2.5E-24 162.5 11.4 121 51-205 6-129 (290)
24 3ab8_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 146.2 12.7 114 51-203 153-268 (268)
25 2iel_A Hypothetical protein TT 92.2 0.63 2.2E-05 36.8 8.0 78 118-202 53-133 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 86.7 4.7 0.00016 37.7 10.8 96 51-173 17-130 (464)
27 2ywx_A Phosphoribosylaminoimid 85.2 3.2 0.00011 33.5 7.6 65 128-204 18-82 (157)
28 4b4k_A N5-carboxyaminoimidazol 83.1 6.5 0.00022 32.4 8.7 74 127-212 40-116 (181)
29 1wy5_A TILS, hypothetical UPF0 82.9 10 0.00035 33.3 10.8 38 51-88 23-63 (317)
30 4grd_A N5-CAIR mutase, phospho 82.5 5.6 0.00019 32.6 8.0 74 129-214 32-108 (173)
31 2xry_A Deoxyribodipyrimidine p 80.5 9.4 0.00032 35.7 10.1 112 64-206 52-163 (482)
32 3oow_A Phosphoribosylaminoimid 78.2 13 0.00046 30.1 8.9 69 128-208 24-95 (166)
33 3umv_A Deoxyribodipyrimidine p 77.8 10 0.00035 36.0 9.4 116 64-207 53-171 (506)
34 3trh_A Phosphoribosylaminoimid 77.2 11 0.00037 30.8 8.1 67 128-206 25-94 (169)
35 1xmp_A PURE, phosphoribosylami 76.8 10 0.00035 31.0 7.8 67 129-207 31-100 (170)
36 3kuu_A Phosphoribosylaminoimid 75.6 12 0.0004 30.7 7.9 67 128-206 31-100 (174)
37 1u11_A PURE (N5-carboxyaminoim 75.0 12 0.00042 30.8 7.9 67 129-207 41-110 (182)
38 3ors_A N5-carboxyaminoimidazol 72.6 16 0.00055 29.5 8.0 68 128-207 22-92 (163)
39 3rg8_A Phosphoribosylaminoimid 72.2 15 0.00053 29.5 7.7 67 128-206 21-91 (159)
40 3lp6_A Phosphoribosylaminoimid 71.9 14 0.00048 30.2 7.5 69 128-208 26-97 (174)
41 1efv_B Electron transfer flavo 71.7 14 0.00049 31.8 8.0 44 150-200 104-147 (255)
42 1o4v_A Phosphoribosylaminoimid 70.7 19 0.00065 29.7 8.1 67 129-207 33-102 (183)
43 1efp_B ETF, protein (electron 69.6 16 0.00055 31.3 7.9 44 150-200 101-144 (252)
44 1o97_C Electron transferring f 68.8 33 0.0011 29.6 9.8 44 150-200 100-143 (264)
45 2wq7_A RE11660P; lyase-DNA com 67.4 26 0.00087 33.4 9.6 118 64-206 44-163 (543)
46 1iv0_A Hypothetical protein; r 66.8 10 0.00035 27.8 5.3 50 151-205 40-94 (98)
47 3g40_A Na-K-CL cotransporter; 65.5 11 0.00038 33.4 6.0 100 66-207 181-280 (294)
48 1k92_A Argininosuccinate synth 61.0 72 0.0025 29.8 11.1 34 52-89 10-45 (455)
49 3tvs_A Cryptochrome-1; circadi 59.2 18 0.00062 34.5 6.8 116 64-205 19-137 (538)
50 3ih5_A Electron transfer flavo 58.9 24 0.00083 29.4 6.9 37 52-88 3-46 (217)
51 1np7_A DNA photolyase; protein 57.1 56 0.0019 30.4 9.7 119 64-206 21-139 (489)
52 2h31_A Multifunctional protein 56.9 38 0.0013 31.5 8.3 69 125-205 281-353 (425)
53 3fy4_A 6-4 photolyase; DNA rep 56.1 28 0.00097 33.2 7.6 72 125-205 70-141 (537)
54 1dnp_A DNA photolyase; DNA rep 52.5 28 0.00097 32.4 6.8 73 124-205 57-131 (471)
55 2l69_A Rossmann 2X3 fold prote 52.2 14 0.00047 27.4 3.6 68 125-203 15-82 (134)
56 2j07_A Deoxyribodipyrimidine p 50.7 46 0.0016 30.4 7.9 72 124-207 53-124 (420)
57 1zun_A Sulfate adenylyltransfe 48.9 48 0.0017 29.3 7.5 37 52-88 46-84 (325)
58 1owl_A Photolyase, deoxyribodi 46.3 47 0.0016 30.9 7.3 113 64-205 18-130 (484)
59 2j4d_A Cryptochrome 3, cryptoc 46.0 89 0.003 29.4 9.2 137 48-207 35-177 (525)
60 1u3d_A Cryptochrome 1 apoprote 43.5 1.5E+02 0.005 27.7 10.3 113 64-206 27-140 (509)
61 3d0c_A Dihydrodipicolinate syn 43.4 1.7E+02 0.0056 25.5 10.6 75 122-203 68-144 (314)
62 1ccw_A Protein (glutamate muta 42.2 85 0.0029 23.8 7.1 65 133-203 28-92 (137)
63 1qv9_A F420-dependent methylen 41.9 23 0.00078 30.7 3.9 49 151-206 53-101 (283)
64 2e0i_A 432AA long hypothetical 41.6 52 0.0018 30.4 6.7 113 64-207 16-129 (440)
65 1vhx_A Putative holliday junct 40.6 13 0.00045 29.3 2.1 56 150-208 43-102 (150)
66 1nu0_A Hypothetical protein YQ 40.5 18 0.0006 28.3 2.8 52 151-205 42-97 (138)
67 2nz2_A Argininosuccinate synth 36.5 1.7E+02 0.0058 26.8 9.3 23 151-173 100-122 (413)
68 3g40_A Na-K-CL cotransporter; 32.9 2.5E+02 0.0087 24.6 11.1 123 53-208 21-150 (294)
69 2c5s_A THII, probable thiamine 32.1 2.8E+02 0.0097 25.0 10.7 33 52-88 187-221 (413)
70 2yxb_A Coenzyme B12-dependent 31.9 77 0.0026 24.8 5.4 52 148-203 56-107 (161)
71 2q5c_A NTRC family transcripti 31.4 92 0.0031 25.2 6.0 21 183-205 59-79 (196)
72 2wte_A CSA3; antiviral protein 30.8 2.4E+02 0.0081 23.6 12.5 37 51-87 7-43 (244)
73 3e96_A Dihydrodipicolinate syn 30.0 2.5E+02 0.0084 24.4 8.9 76 122-204 68-145 (316)
74 2i2x_B MTAC, methyltransferase 28.5 1.6E+02 0.0054 24.8 7.2 65 133-204 148-212 (258)
75 1sur_A PAPS reductase; assimil 28.4 2.3E+02 0.0078 22.6 9.5 33 53-88 45-78 (215)
76 2ywb_A GMP synthase [glutamine 27.9 3.7E+02 0.013 24.9 10.7 33 53-88 210-243 (503)
77 3qja_A IGPS, indole-3-glycerol 27.2 2.9E+02 0.0099 23.5 9.7 69 125-202 151-219 (272)
78 1kor_A Argininosuccinate synth 26.9 3.5E+02 0.012 24.4 11.0 23 151-173 96-118 (400)
79 3rxy_A NIF3 protein; structura 26.3 50 0.0017 28.9 3.5 51 29-85 16-66 (278)
80 1nmo_A Hypothetical protein YB 26.3 69 0.0024 27.1 4.4 43 38-85 21-63 (247)
81 3fni_A Putative diflavin flavo 26.1 1.4E+02 0.0047 23.0 6.0 65 134-205 31-96 (159)
82 3gxq_A Putative regulator of t 25.9 52 0.0018 20.7 2.6 28 139-166 11-38 (54)
83 2qjg_A Putative aldolase MJ040 25.4 2E+02 0.007 23.8 7.4 42 152-204 169-210 (273)
84 1jq5_A Glycerol dehydrogenase; 25.3 1.2E+02 0.0041 26.8 6.1 68 126-205 48-119 (370)
85 1g63_A Epidermin modifying enz 25.1 68 0.0023 25.9 4.0 33 52-85 2-36 (181)
86 3qjg_A Epidermin biosynthesis 25.0 77 0.0026 25.5 4.3 33 52-85 5-39 (175)
87 3m9w_A D-xylose-binding peripl 24.5 2.2E+02 0.0077 23.4 7.5 63 132-204 28-91 (313)
88 3hly_A Flavodoxin-like domain; 24.5 1.5E+02 0.0052 22.7 5.9 65 134-205 27-91 (161)
89 3o1l_A Formyltetrahydrofolate 24.0 3.6E+02 0.012 23.5 9.1 128 31-210 85-217 (302)
90 3l6u_A ABC-type sugar transpor 23.8 2.5E+02 0.0084 22.8 7.5 69 127-205 29-98 (293)
91 1ni5_A Putative cell cycle pro 23.8 1.1E+02 0.0039 27.8 5.8 37 52-88 13-52 (433)
92 2yyb_A Hypothetical protein TT 23.1 95 0.0033 26.1 4.7 43 38-85 22-64 (242)
93 2pg3_A Queuosine biosynthesis 22.5 3E+02 0.01 22.1 9.4 32 53-88 3-36 (232)
94 2amj_A Modulator of drug activ 22.1 1.6E+02 0.0055 23.6 5.8 45 124-172 35-80 (204)
95 1v6t_A Hypothetical UPF0271 pr 22.1 3.7E+02 0.013 23.0 8.9 122 54-201 32-162 (255)
96 2is8_A Molybdopterin biosynthe 21.7 1.8E+02 0.006 22.6 5.8 41 132-174 30-75 (164)
97 1vl2_A Argininosuccinate synth 21.7 4.7E+02 0.016 24.0 11.0 36 49-88 11-48 (421)
98 3inp_A D-ribulose-phosphate 3- 21.6 73 0.0025 27.1 3.7 42 126-170 183-224 (246)
99 1sbz_A Probable aromatic acid 21.5 1.3E+02 0.0043 24.7 5.0 32 53-85 1-35 (197)
100 1vb5_A Translation initiation 21.4 2.7E+02 0.0092 23.8 7.4 45 162-209 177-224 (276)
101 3vk5_A MOEO5; TIM barrel, tran 21.3 78 0.0027 27.8 3.8 46 154-203 58-104 (286)
102 2dbs_A Hypothetical protein TT 21.3 90 0.0031 22.0 3.4 22 51-72 29-54 (90)
103 2bon_A Lipid kinase; DAG kinas 21.2 2.6E+02 0.0088 24.2 7.4 66 131-208 52-122 (332)
104 3bl5_A Queuosine biosynthesis 21.1 3E+02 0.01 21.6 10.1 22 153-174 104-125 (219)
105 2ejb_A Probable aromatic acid 21.1 1.3E+02 0.0043 24.5 4.9 32 53-85 2-35 (189)
106 2fyw_A Conserved hypothetical 21.1 73 0.0025 27.2 3.6 48 33-85 18-66 (267)
107 3zqu_A Probable aromatic acid 21.1 1.3E+02 0.0043 25.0 5.0 33 52-85 4-38 (209)
108 2oq2_A Phosphoadenosine phosph 20.6 3.7E+02 0.013 22.4 8.1 37 52-88 41-78 (261)
109 2hma_A Probable tRNA (5-methyl 20.6 4.5E+02 0.015 23.3 9.7 35 52-89 9-44 (376)
110 1y5e_A Molybdenum cofactor bio 20.0 1.6E+02 0.0055 23.0 5.3 38 135-174 43-85 (169)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=2.5e-26 Score=183.39 Aligned_cols=140 Identities=15% Similarity=0.243 Sum_probs=118.6
Q ss_pred CCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 50 ~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
.++++||||+|+|+ .+||+||+.+|...+++|++|||++.........+ .....+.+..++.+++.|++
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~ 73 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALD---------PVLSELLDAEAAHAKDAMRQ 73 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc---------cccHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999999999988999999999987643211100 01223444556677888999
Q ss_pred HHHHhhhCCCe-eEEEEEEecCchHHHHHH-HHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 128 YIRLCNDAKQV-TVETMLVESKATAKAILD-LISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 128 ~~~~~~~~g~v-~ve~~v~~G~~va~~Il~-~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
+.+.+...| + +++..+..|++ +++|++ +|++.++||||||++|++++.++++| |++++|+++++ |||||||
T Consensus 74 ~~~~~~~~g-~~~~~~~~~~g~~-~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~--~pVlvV~ 146 (146)
T 3s3t_A 74 RQQFVATTS-APNLKTEISYGIP-KHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVG-STTSYVVDHAP--CNVIVIR 146 (146)
T ss_dssp HHHHHTTSS-CCCCEEEEEEECH-HHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSC-HHHHHHHHHCS--SEEEEEC
T ss_pred HHHHHHhcC-CcceEEEEecCCh-HHHHHHHHHhhcCCCEEEECCCCCCCcceEEEc-chHHHHhccCC--CCEEEeC
Confidence 998888888 8 99999999998 899999 99999999999999999999887777 99999999999 9999996
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.94 E-value=5.2e-26 Score=185.07 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=117.4
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCC-----CCCCCcccc--c-ccccccHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPV-----TYINTPVGR--L-ARSQLNQEQVRVYVNEENNR 120 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~-----~~~~~~~g~--~-~~~~l~~~~~~~~~~~~~~~ 120 (257)
++++||||+|+|+ .+||+||+++|...+++|++|||+++. ......... + +. ..+....+.+..++.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEE 80 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999999754 110100000 1 10 000122344455667
Q ss_pred HHHHHHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 121 RRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 121 ~~~lL~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
+++.|+++.+.+...+ +++++.+..|++ +++|+++|++.++||||||+||++++.++++| |++++|+++++ ||||
T Consensus 81 ~~~~l~~~~~~~~~~g-~~~~~~v~~G~~-~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~G-Sv~~~vl~~~~--~pVl 155 (162)
T 1mjh_A 81 AKNKMENIKKELEDVG-FKVKDIIVVGIP-HEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG-SVTENVIKKSN--KPVL 155 (162)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC-HHHHHHHHHCC--SCEE
T ss_pred HHHHHHHHHHHHHHcC-CceEEEEcCCCH-HHHHHHHHHHcCCCEEEEcCCCCCCccceEec-chHHHHHHhCC--CCEE
Confidence 7888888888888888 999999999998 89999999999999999999999999988877 99999999999 9999
Q ss_pred EEcCCC
Q 025166 201 IVHDGK 206 (257)
Q Consensus 201 VVr~~~ 206 (257)
|||...
T Consensus 156 vv~~~~ 161 (162)
T 1mjh_A 156 VVKRKN 161 (162)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 998753
No 3
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.93 E-value=3.9e-25 Score=175.05 Aligned_cols=134 Identities=14% Similarity=0.193 Sum_probs=112.2
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHh-cCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHH-HHHHHHHHH
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHA-VSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEEN-NRRRNLLQK 127 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a-~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~~lL~~ 127 (257)
+++||||+|+|+ ..|++||+.+| +..+++|+++||+++....... + .....+.+..+ +.+++.|++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA-V---------LAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH-H---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc-c---------cCcHHHHHHHHHHHHHHHHHH
Confidence 579999999999 99999999999 9999999999999876421100 0 01112334445 677788999
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
+.+.+...+ ++++..+..|++ +++|+++++ ++||||||++|++++.+++ | |++++|+++++ |||||||
T Consensus 71 ~~~~~~~~g-~~~~~~v~~g~~-~~~I~~~a~--~~dliV~G~~~~~~~~~~~-G-s~~~~vl~~~~--~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKG-INPFVVIKEGEP-VEMVLEEAK--DYNLLIIGSSENSFLNKIF-A-SHQDDFIQKAP--IPVLIVK 138 (138)
T ss_dssp HHHHHHTTT-CCCEEEEEESCH-HHHHHHHHT--TCSEEEEECCTTSTTSSCC-C-CTTCHHHHHCS--SCEEEEC
T ss_pred HHHHHHHCC-CCeEEEEecCCh-HHHHHHHHh--cCCEEEEeCCCcchHHHHh-C-cHHHHHHhcCC--CCEEEeC
Confidence 988888888 999999999998 899999999 9999999999999998866 6 99999999999 9999996
No 4
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=6.3e-25 Score=177.82 Aligned_cols=137 Identities=16% Similarity=0.225 Sum_probs=112.9
Q ss_pred CCCCeEEEeec--CCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHH
Q 025166 50 AAASDVYVAVG--KDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLL 125 (257)
Q Consensus 50 ~~~~kILVaVD--gS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL 125 (257)
..+++||||+| +|+ .+|++||+.+|+..+++|++|||+++...... ..+ .+ .+.+..++.+++.|
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~~~-----~~----~~~~~~~~~~~~~l 81 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF--DSL-----TP----SKIQAKRKHVEDVV 81 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC--CSS-----HH----HHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc--ccC-----CH----HHHHHHHHHHHHHH
Confidence 46899999999 999 99999999999989999999999987542111 111 11 23344456677888
Q ss_pred HHHHHHhhhCCCe-eEEEEEEe-cCchHHHHHHH-HhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEE
Q 025166 126 QKYIRLCNDAKQV-TVETMLVE-SKATAKAILDL-ISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 202 (257)
Q Consensus 126 ~~~~~~~~~~g~v-~ve~~v~~-G~~va~~Il~~-A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVV 202 (257)
+++.+.+...| + .++..+.. |++ +++|+++ |++.++||||||++|++++. .++| |++++|+++++ ||||||
T Consensus 82 ~~~~~~~~~~g-~~~~~~~v~~~g~~-~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~G-s~~~~vl~~a~--~PVlvV 155 (156)
T 3fg9_A 82 AEYVQLAEQRG-VNQVEPLVYEGGDV-DDVILEQVIPEFKPDLLVTGADTEFPHS-KIAG-AIGPRLARKAP--ISVIVV 155 (156)
T ss_dssp HHHHHHHHHHT-CSSEEEEEEECSCH-HHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCS-CHHHHHHHHCS--SEEEEE
T ss_pred HHHHHHHHHcC-CCceEEEEEeCCCH-HHHHHHHHHHhcCCCEEEECCCCCCccc-eeec-chHHHHHHhCC--CCEEEe
Confidence 88888888778 8 58999999 888 8999999 99999999999999999987 4666 99999999999 999999
Q ss_pred c
Q 025166 203 H 203 (257)
Q Consensus 203 r 203 (257)
|
T Consensus 156 ~ 156 (156)
T 3fg9_A 156 R 156 (156)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.93 E-value=4.9e-25 Score=180.85 Aligned_cols=151 Identities=11% Similarity=0.002 Sum_probs=112.4
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccH-HHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQ-EQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~lL~~ 127 (257)
++++||||+|+|+ .+||+||+.+|+..+++|++|||+++.... .....++...... ...+.+.+..++.+++.|++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE-ELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG-CCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc-ccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 5899999999999 899999999999999999999999764211 0000010000000 00001122334556677888
Q ss_pred HHHHhhhCCCeeEEE--EEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 128 YIRLCNDAKQVTVET--MLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~--~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
+.+.+...+ ++++. .+..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++ |||||||..
T Consensus 83 ~~~~~~~~g-~~~~~~~~~~~g~~-~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~G-sv~~~vl~~~~--~PVlvv~~~ 157 (170)
T 2dum_A 83 KAEEVKRAF-RAKNVRTIIRFGIP-WDEIVKVAEEENVSLIILPSRGKLSLSHEFLG-STVMRVLRKTK--KPVLIIKEV 157 (170)
T ss_dssp HHHHHHHHT-TCSEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCCCC--TTCCC-HHHHHHHHHCS--SCEEEECCC
T ss_pred HHHHHHHcC-CceeeeeEEecCCh-HHHHHHHHHHcCCCEEEECCCCCCccccceec-hHHHHHHHhCC--CCEEEEccC
Confidence 887777667 88877 8889998 89999999999999999999999999887777 99999999999 999999975
Q ss_pred Cc
Q 025166 206 KK 207 (257)
Q Consensus 206 ~~ 207 (257)
..
T Consensus 158 ~~ 159 (170)
T 2dum_A 158 DE 159 (170)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.93 E-value=4.7e-26 Score=181.68 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=112.0
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
++++||||+|+|+ .+|++||+.+|...+++|+++||++.........+..+... .+.+.+..++.+++.++++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQ-----LDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGG-----GCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhh-----hhhHHHHHHHHHHHHHHHH
Confidence 4899999999999 99999999999989999999999986431000000000000 0001122345567778888
Q ss_pred HHHhhhCCCeeE---EEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEE
Q 025166 129 IRLCNDAKQVTV---ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 202 (257)
Q Consensus 129 ~~~~~~~g~v~v---e~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVV 202 (257)
.+.+...+ +++ +..+..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++ ||||||
T Consensus 76 ~~~~~~~g-~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~--~pVlvV 147 (147)
T 3hgm_A 76 KTRATELG-VPADKVRAFVKGGRP-SRTIVRFARKRECDLVVIGAQGTNGDKSLLLG-SVAQRVAGSAH--CPVLVV 147 (147)
T ss_dssp HHHHHHTT-CCGGGEEEEEEESCH-HHHHHHHHHHTTCSEEEECSSCTTCCSCCCCC-HHHHHHHHHCS--SCEEEC
T ss_pred HHHHHhcC-CCccceEEEEecCCH-HHHHHHHHHHhCCCEEEEeCCCCccccceeec-cHHHHHHhhCC--CCEEEC
Confidence 88888777 877 899999998 89999999999999999999999999887777 99999999999 999996
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=3.1e-25 Score=182.62 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=109.6
Q ss_pred CCCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEE--EEecCCCC-CCCcccccccccccHHHHHHHHHHHHHHHHH
Q 025166 49 DAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV--HVFSPVTY-INTPVGRLARSQLNQEQVRVYVNEENNRRRN 123 (257)
Q Consensus 49 ~~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~Ll--HV~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 123 (257)
...+++||||+|+|+ .+||+||+++|. .+++|++| ||+++... .... .+ ...+.+..++.+++
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~ 81 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI---LK--------DESYKVTGTAPIYE 81 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-------------------------------CCTHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc---cc--------cHHHHHHHHHHHHH
Confidence 346899999999999 999999999999 99999999 88765421 1100 00 01122223345667
Q ss_pred HHHHHHHHhhhCCCee-EEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEE
Q 025166 124 LLQKYIRLCNDAKQVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 202 (257)
Q Consensus 124 lL~~~~~~~~~~g~v~-ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVV 202 (257)
.|+++.+.+...+ ++ ++..+..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++ ||||||
T Consensus 82 ~l~~~~~~~~~~g-v~~v~~~v~~G~~-~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG-Sva~~vl~~a~--~PVlvV 156 (163)
T 1tq8_A 82 ILHDAKERAHNAG-AKNVEERPIVGAP-VDALVNLADEEKADLLVVGNVGLSTIAGRLLG-SVPANVSRRAK--VDVLIV 156 (163)
T ss_dssp HHHHHHHHHHTTT-CCEEEEEEECSSH-HHHHHHHHHHTTCSEEEEECCCCCSHHHHHTB-BHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCH-HHHHHHHHHhcCCCEEEECCCCCCcccceeec-cHHHHHHHhCC--CCEEEE
Confidence 7888888887778 88 9999999998 89999999999999999999999999887777 99999999999 999999
Q ss_pred cCCC
Q 025166 203 HDGK 206 (257)
Q Consensus 203 r~~~ 206 (257)
|...
T Consensus 157 ~~~~ 160 (163)
T 1tq8_A 157 HTTE 160 (163)
T ss_dssp CCC-
T ss_pred eCCC
Confidence 8653
No 8
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.92 E-value=1.1e-24 Score=172.72 Aligned_cols=134 Identities=24% Similarity=0.289 Sum_probs=104.0
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
++++||||+|+|+ .+|++||+.+|+..+++|++|||+++... .. ..+ .. +.+.+..++.+++.|+++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~-~~--~~~-----~~---~~~~~~~~~~~~~~l~~~ 69 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD-YL--GEP-----FF---EEALRRRLERAEGVLEEA 69 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------CHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc-cc--ccc-----ch---HHHHHHHHHHHHHHHHHH
Confidence 4799999999999 99999999999988999999999975321 10 000 00 012222344556667666
Q ss_pred HHHhhhCCCe-eEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 129 IRLCNDAKQV-TVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 129 ~~~~~~~g~v-~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
.+. .+ + +++..+..|++ +++|+++|++.++||||||++|++++.+.++| |++++|+++++ |||||||
T Consensus 70 ~~~---~g-~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~--~pVlvv~ 137 (137)
T 2z08_A 70 RAL---TG-VPKEDALLLEGVP-AEAILQAARAEKADLIVMGTRGLGALGSLFLG-SQSQRVVAEAP--CPVLLVR 137 (137)
T ss_dssp HHH---HC-CCGGGEEEEESSH-HHHHHHHHHHTTCSEEEEESSCTTCCSCSSSC-HHHHHHHHHCS--SCEEEEC
T ss_pred HHH---cC-CCccEEEEEecCH-HHHHHHHHHHcCCCEEEECCCCCchhhhhhhc-cHHHHHHhcCC--CCEEEeC
Confidence 554 46 7 77777889988 89999999999999999999999999887777 99999999999 9999996
No 9
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.92 E-value=3.3e-24 Score=176.94 Aligned_cols=148 Identities=20% Similarity=0.276 Sum_probs=104.3
Q ss_pred CCCeEEEeecCC----------h-HHHHHHHHHHhcC---CCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHH
Q 025166 51 AASDVYVAVGKD----------D-LHVLKWALDHAVS---PGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNE 116 (257)
Q Consensus 51 ~~~kILVaVDgS----------~-~~AL~~Al~~a~~---~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 116 (257)
.+++||||+|+| . .+||+||++++.+ .+++|++|||++.........+.. .........+.++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 80 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI---YASPEDFRDMRQS 80 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CC---CCSHHHHHHHTTS
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccc---cCCHHHHHHHHHH
Confidence 478999999998 4 8899999998744 589999999986532100000000 0011122223333
Q ss_pred HHHHHHHHHHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCC
Q 025166 117 ENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDY 196 (257)
Q Consensus 117 ~~~~~~~lL~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~ 196 (257)
.++.+++.|+++.+.+...+ ++++..+..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~g-~~~~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~G-sva~~vl~~a~-- 155 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHEIG-VGCEAWIKTGDP-KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVG-TVSAFCVKHAE-- 155 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CEEEEEEEESCH-HHHHHHHHHHHCCSEEEEEECCCC---------CHHHHHHHHCS--
T ss_pred HHHHHHHHHHHHHHHHHHCC-CceEEEEecCCH-HHHHHHHHHHhCCCEEEEeCCCCChhhhhhcC-chHHHHHhCCC--
Confidence 34456677888888777778 999999999998 89999999999999999999999999887777 99999999999
Q ss_pred ceEEEEcCCC
Q 025166 197 CEVTIVHDGK 206 (257)
Q Consensus 197 cPVLVVr~~~ 206 (257)
|||||||...
T Consensus 156 ~pVlvv~~~~ 165 (175)
T 2gm3_A 156 CPVMTIKRNA 165 (175)
T ss_dssp SCEEEEECCG
T ss_pred CCEEEEcCCc
Confidence 9999999754
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=3.9e-24 Score=174.60 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=106.6
Q ss_pred CCCeEEEeecC-Ch--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGK-DD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 51 ~~~kILVaVDg-S~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
+|++||||+|+ |+ .+||+||+.+|...+++|++|||++..... .+ ...+.+++.|++
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~------------~~--------~~~~~~~~~l~~ 82 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT------------KD--------EDIIEAKETLSW 82 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS------------CH--------HHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc------------cH--------HHHHHHHHHHHH
Confidence 58999999999 99 999999999999889999999999754210 00 112345666777
Q ss_pred HHHHhhhCCCeeEEEE--EEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 128 YIRLCNDAKQVTVETM--LVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~--v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
+.+.+...+ ++++.. +..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++ |||||||
T Consensus 83 ~~~~~~~~g-~~~~~~~~v~~G~~-~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG-Sv~~~vl~~a~--~PVLvVr 155 (155)
T 3dlo_A 83 AVSIIRKEG-AEGEEHLLVRGKEP-PDDIVDFADEVDAIAIVIGIRKRSPTGKLIFG-SVARDVILKAN--KPVICIK 155 (155)
T ss_dssp HHHHHHHTT-CCEEEEEEESSSCH-HHHHHHHHHHTTCSEEEEECCEECTTSCEECC-HHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHhcC-CCceEEEEecCCCH-HHHHHHHHHHcCCCEEEECCCCCCCCCCEEec-cHHHHHHHhCC--CCEEEeC
Confidence 777777777 766654 456888 89999999999999999999999999887777 99999999999 9999996
No 11
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.91 E-value=2.7e-24 Score=172.55 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=98.0
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCC-CcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYIN-TPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
++++||||+|+|+ .+||+||+.+|...+++|++|||+++..... ...+..+.. .. .+.+...+++++.|++
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLD-TE-----TTYDAMLDVEKQKLSQ 78 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSS-SC-----CCHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcC-HH-----HHHHHHHHHHHHHHHH
Confidence 4899999999999 9999999999998999999999998743210 001111110 00 1112233455566666
Q ss_pred HHHHhhhCCCee-EEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 128 YIRLCNDAKQVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 128 ~~~~~~~~g~v~-ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
+.+.+ + +. ++..+..|++ +++|+++|++.++||||||++|++++. .++| |++++|+++++ |||||||...
T Consensus 79 ~~~~~---~-~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~G-s~~~~vl~~~~--~pVlvv~~~~ 149 (150)
T 3tnj_A 79 IGNTL---G-IDPAHRWLVWGEP-REEIIRIAEQENVDLIVVGSHGRHGLA-LLLG-STANSVLHYAK--CDVLAVRLRD 149 (150)
T ss_dssp HHHHH---T-CCGGGEEEEESCH-HHHHHHHHHHTTCSEEEEEEC---------CC-CHHHHHHHHCS--SEEEEEECCC
T ss_pred HHHHc---C-CCcceEEEecCCH-HHHHHHHHHHcCCCEEEEecCCCCCcC-eEec-chHHHHHHhCC--CCEEEEeCCC
Confidence 65444 4 54 4677889998 899999999999999999999999988 7776 99999999999 9999999753
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.90 E-value=9e-24 Score=167.90 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=98.3
Q ss_pred CCeEEEeecCCh----HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 52 ASDVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 52 ~~kILVaVDgS~----~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
.++||||+|+|+ .+|++||+.+|...+++|++|||+++............ . . ....+ +..++.++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~-----~-~-~~~~~---~~~~~~~~~ 70 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYT-----A-E-LPGMD---ELREGSETQ 70 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------------CHH---HHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccccccccc-----c-h-hhhHH---HHHHHHHHH
Confidence 379999999998 69999999999989999999999987532211100000 0 0 00111 122233333
Q ss_pred HHHHhhhCC--CeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 128 YIRLCNDAK--QVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 128 ~~~~~~~~g--~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
+.+.+...+ .+.++..+..|++ +++|+++|++.++||||||++| +++.++++| |++++|+++++ |||||||
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~G-s~~~~v~~~~~--~pVlvv~ 143 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEGSP-KDKILALAKSLPADLVIIASHR-PDITTYLLG-SNAAAVVRHAE--CSVLVVR 143 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEESCH-HHHHHHHHHHTTCSEEEEESSC-TTCCSCSSC-HHHHHHHHHCS--SEEEEEC
T ss_pred HHHHHHHcCCCCCceEEEEEecCh-HHHHHHHHHHhCCCEEEEeCCC-CCCeeeeec-cHHHHHHHhCC--CCEEEeC
Confidence 333444332 1568899999988 8999999999999999999996 778877777 99999999999 9999996
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.88 E-value=7.6e-23 Score=162.37 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=101.2
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecC-CCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSP-VTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
++++||||+|+|+ .+||+||+.+|...+++|+++||++. +.... +... ...+.+.+...+++++.|++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~l~~ 71 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT---GLID------VNMSSMQDRISTETQKALLD 71 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC---CCEE------HHHHHHTTCCCCHHHHHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc---cccc------cchHHHHHHHHHHHHHHHHH
Confidence 4799999999999 99999999999988999999999954 21111 1000 01111111122334555655
Q ss_pred HHHHhhhCCCeeE-EEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 128 YIRLCNDAKQVTV-ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 128 ~~~~~~~~g~v~v-e~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
+.+. .+ +++ +..+..|++ +++|+++|++.++||||||++ ++++.+ +| |++++|+++++ |||||||.+.
T Consensus 72 ~~~~---~~-~~~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~-~~~~~~--lg-s~~~~vl~~~~--~pVlvv~~~~ 140 (141)
T 1jmv_A 72 LAES---VD-YPISEKLSGSGDL-GQVLSDAIEQYDVDLLVTGHH-QDFWSK--LM-SSTRQVMNTIK--IDMLVVPLRD 140 (141)
T ss_dssp HHHH---SS-SCCCCEEEEEECH-HHHHHHHHHHTTCCEEEEEEC-CCCHHH--HH-HHHHHHHTTCC--SEEEEEECCC
T ss_pred HHHH---cC-CCceEEEEecCCH-HHHHHHHHHhcCCCEEEEeCC-Cchhhh--hc-chHHHHHhcCC--CCEEEeeCCC
Confidence 5443 35 655 567778998 899999999999999999999 888876 46 99999999999 9999999753
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.87 E-value=1.4e-21 Score=174.95 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=114.5
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
.+++||||+|+|+ ..||+||+.+|+..+++|++|||++...... .+.. .....+.+.+...+.+++.|+++
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~l~~~ 78 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM--TTLL-----SPDERNAMRKGVINQKTAWIKQQ 78 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC--TTTS-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh--cccc-----ChhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999 9999999999999999999999987532111 0111 11222333444455667778888
Q ss_pred HHHhhhCCCeeEEEEEE-ecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLV-ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~-~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+...+ +++++.+. .|++ .++|++++++.++||||||++|++++.+.++| |++.+|+++++ ||||||+.+
T Consensus 79 ~~~~~~~~-v~~~~~~~~~g~~-~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~G-s~~~~vl~~~~--~PVlvv~~~ 151 (319)
T 3olq_A 79 ARYYLEAG-IQIDIKVIWHNRP-YEAIIEEVITDKHDLLIKMAHQHDKLGSLIFT-PLDWQLLRKCP--APVWMVKDK 151 (319)
T ss_dssp HHHHHHTT-CCEEEEEEECSCH-HHHHHHHHHHHTCSEEEEEEBCC--CCSCBCC-HHHHHHHHHCS--SCEEEEESS
T ss_pred HHHHhhcC-CeEEEEEEecCCh-HHHHHHHHHhcCCCEEEEecCcCchhhccccc-ccHHHHHhcCC--CCEEEecCc
Confidence 88777778 99999998 8888 89999999999999999999999999887777 99999999999 999999865
No 15
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=3.2e-21 Score=168.80 Aligned_cols=145 Identities=17% Similarity=0.054 Sum_probs=110.8
Q ss_pred CeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCC-CCcccccc-cccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYI-NTPVGRLA-RSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 53 ~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~-~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
++||||+|+|+ ..|++||+.+|+..+++|+++||++..... ....+... ...+ .+..+...+..++.+++.|+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPV-PVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999 999999999999899999999998753210 00000000 0000 0001111233455677788888
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCC-CcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSP-RSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s-~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+...+ ++++..+..|++ +++|+++ +.++||||||++|++ ++.+.++| |++++|+++++ |||||||..
T Consensus 80 ~~~~~~~g-~~~~~~~~~g~~-~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~G-s~~~~v~~~a~--~PVlvv~~~ 150 (268)
T 3ab8_A 80 RQSALAAG-VAVEAVLEEGVP-HEAILRR--ARAADLLVLGRSGEAHGDGFGGLG-STADRVLRASP--VPVLLAPGE 150 (268)
T ss_dssp HHHHHHTT-CCEEEEEEEECH-HHHHHHH--HTTCSEEEEESSCTTSCTTCCSCC-HHHHHHHHHCS--SCEEEECSS
T ss_pred HHHHHhCC-CCeEEEEecCCH-HHHHHhh--ccCCCEEEEeccCCCccccccccc-hhHHHHHHhCC--CCEEEECCC
Confidence 88888778 999999999999 8999999 779999999999999 88887777 99999999999 999999865
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.85 E-value=6.8e-21 Score=170.58 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=110.2
Q ss_pred CCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 50 ~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
..+++||||+|+|+ ..|++||+.+|+..+++|++|||+++.. ..+..+.++ .+ +.+..++.+++.|++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~~~~~~~~-----~~----~~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV-ATWLEVPLP-----PG----VLRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC-CCTTCCCCC-----HH----HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcc-cccccCCCC-----ch----hhHHHHHHHHHHHHH
Confidence 36899999999999 8999999999998899999999997432 111111111 11 122234455667777
Q ss_pred HHHHhhhC-----CCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEE
Q 025166 128 YIRLCNDA-----KQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 202 (257)
Q Consensus 128 ~~~~~~~~-----g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVV 202 (257)
+.+.+... + ++++..+..|++ +++|+++++ ++||||||++|++++.+.++| |++++|+++++ ||||||
T Consensus 87 ~~~~~~~~~~~~~~-~~~~~~~~~g~~-~~~I~~~a~--~~DliV~G~~g~~~~~~~~~G-s~~~~vl~~~~--~PVlvv 159 (309)
T 3cis_A 87 ALKVVEQASLRAGP-PTVHSEIVPAAA-VPTLVDMSK--DAVLMVVGCLGSGRWPGRLLG-SVSSGLLRHAH--CPVVII 159 (309)
T ss_dssp HHHHHHHHCSSSCC-SCEEEEEESSCH-HHHHHHHGG--GEEEEEEESSCTTCCTTCCSC-HHHHHHHHHCS--SCEEEE
T ss_pred HHHHHHHhcccCCC-ceEEEEEecCCH-HHHHHHHhc--CCCEEEECCCCCccccccccC-cHHHHHHHhCC--CCEEEE
Confidence 77666554 6 899999999998 899999997 899999999999999887777 99999999999 999999
Q ss_pred cCCC
Q 025166 203 HDGK 206 (257)
Q Consensus 203 r~~~ 206 (257)
+...
T Consensus 160 ~~~~ 163 (309)
T 3cis_A 160 HDED 163 (309)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8754
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.85 E-value=2.2e-21 Score=172.47 Aligned_cols=141 Identities=14% Similarity=0.151 Sum_probs=114.6
Q ss_pred CCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 50 ~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
-++++||||+|+|+ ..|++||+.+|+..+++|++|||++.........+.. . ..+.+..++.+++.|++
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~l~~ 90 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGID-----I----DHYIDEMSEKAEEVLPE 90 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCC-----T----THHHHHHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccccc-----H----HHHHHHHHHHHHHHHHH
Confidence 46899999999999 9999999999999999999999998754221111110 1 11223345567778888
Q ss_pred HHHHhhhCCCeeEEE-EEE-ecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 128 YIRLCNDAKQVTVET-MLV-ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~-~v~-~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
+.+.+...+ ++++. .+. .|++ +++| ++++.++||||||++|++.+.+.++| |++++|+++++ |||||||..
T Consensus 91 ~~~~~~~~g-~~~~~~~v~~~g~~-~~~I--~a~~~~~DliV~G~~g~~~~~~~~~G-s~~~~vl~~~~--~PVlvv~~~ 163 (294)
T 3loq_A 91 VAQKIEAAG-IKAEVIKPFPAGDP-VVEI--IKASENYSFIAMGSRGASKFKKILLG-SVSEGVLHDSK--VPVYIFKHD 163 (294)
T ss_dssp HHHHHHHTT-CEEEECSSCCEECH-HHHH--HHHHTTSSEEEEECCCCCHHHHHHHC-CHHHHHHHHCS--SCEEEECCC
T ss_pred HHHHHHHcC-CCcceeEeeccCCh-hHhe--eeccCCCCEEEEcCCCCccccceeec-cHHHHHHhcCC--CCEEEecCc
Confidence 888888888 99998 777 8998 8999 99999999999999999998887777 99999999999 999999876
Q ss_pred C
Q 025166 206 K 206 (257)
Q Consensus 206 ~ 206 (257)
.
T Consensus 164 ~ 164 (294)
T 3loq_A 164 M 164 (294)
T ss_dssp T
T ss_pred c
Confidence 4
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.85 E-value=1.6e-20 Score=148.56 Aligned_cols=130 Identities=12% Similarity=0.000 Sum_probs=96.7
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEe-cC-CCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVF-SP-VTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~-~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~ 126 (257)
++++||||+|+|+ .+||+||+.+|+..+++|++|||+ +. +..........+. .. .+.+...+.+++.|+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~ 75 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPF---PP----EIKEESKKRIERRLR 75 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCC---CT----HHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCC---Ch----HHHHHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999998 63 1000000000110 01 122233445666677
Q ss_pred HHHHHh--hhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 127 KYIRLC--NDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 127 ~~~~~~--~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
++ +.+ ...+ +++..+..|++ +++|+++|++.++||||||++|+ |++++|+++++ |||||||
T Consensus 76 ~~-~~~~~~~~~--~~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~g~----------sv~~~vl~~a~--~PVlvv~ 138 (138)
T 1q77_A 76 EV-WEKLTGSTE--IPGVEYRIGPL-SEEVKKFVEGKGYELVVWACYPS----------AYLCKVIDGLN--LASLIVK 138 (138)
T ss_dssp HH-HHHHHSCCC--CCCEEEECSCH-HHHHHHHHTTSCCSEEEECSCCG----------GGTHHHHHHSS--SEEEECC
T ss_pred HH-HHHhhccCC--cceEEEEcCCH-HHHHHHHHHhcCCCEEEEeCCCC----------chHHHHHHhCC--CceEeeC
Confidence 77 653 2222 56667888998 89999999999999999999986 89999999999 9999986
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.83 E-value=2.5e-20 Score=165.51 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=103.1
Q ss_pred CCCeEEEeecCCh---------HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD---------LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRR 121 (257)
Q Consensus 51 ~~~kILVaVDgS~---------~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 121 (257)
.+++||||+|+|+ .+|++||+.+|...+++|+++||+++..... . .+. . .+.+..++..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~---~-~~~----~----~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS---A-DPT----F----QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------C----H----HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc---c-Cch----h----HHHHHHHHHH
Confidence 6899999999997 4799999999999999999999998653211 0 110 0 1222333444
Q ss_pred HHHHHHHHHHhhhCCCee-EEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 122 RNLLQKYIRLCNDAKQVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 122 ~~lL~~~~~~~~~~g~v~-ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
++.|+++.+.. + ++ ++..+..|++ +++|+++|++.++||||||++|++++.++++| |++++|+++++ ||||
T Consensus 201 ~~~l~~~~~~~---g-~~~~~~~v~~g~~-~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~G-sv~~~vl~~~~--~pVL 272 (290)
T 3mt0_A 201 REACRTFQAEY---G-FSDEQLHIEEGPA-DVLIPRTAQKLDAVVTVIGTVARTGLSGALIG-NTAEVVLDTLE--SDVL 272 (290)
T ss_dssp HHHHHHHHHHH---T-CCTTTEEEEESCH-HHHHHHHHHHHTCSEEEEECCSSCCGGGCCSC-HHHHHHHTTCS--SEEE
T ss_pred HHHHHHHHHHc---C-CCcceEEEeccCH-HHHHHHHHHhcCCCEEEECCCCCcCCcceecc-hHHHHHHhcCC--CCEE
Confidence 55565554433 4 53 5667888988 89999999999999999999999999988877 99999999999 9999
Q ss_pred EEcCC
Q 025166 201 IVHDG 205 (257)
Q Consensus 201 VVr~~ 205 (257)
|||+.
T Consensus 273 vv~~~ 277 (290)
T 3mt0_A 273 VLKPD 277 (290)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.83 E-value=5.9e-20 Score=164.47 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=103.4
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
.+++||||+|+|+ .+||+||+.+|...+++|++|||+++..... .+. .. .+.+ .+..++.|+++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----~~~--~~---~~~~----~~~~~~~l~~~ 235 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE-----WPG--ID---WPAT----QSMAEQVLAER 235 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT-----CSS--CC---HHHH----HHHHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC-----CCc--cc---HHHH----HHHHHHHHHHH
Confidence 4789999999999 8999999999998999999999997643211 000 00 1112 22333344444
Q ss_pred HHHhhh--CCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCND--AKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~--~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+.. .+ ++++..+..|++ +++|+++++ ++||||||++|++++.++++| |++++|+++++ |||||||..
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~g~~-~~~I~~~a~--~adliV~G~~~~~~~~~~l~G-sv~~~vl~~~~--~pVlvv~~~ 307 (309)
T 3cis_A 236 LAGWQERYPN-VAITRVVVRDQP-ARQLVQRSE--EAQLVVVGSRGRGGYAGMLVG-SVGETVAQLAR--TPVIVARES 307 (309)
T ss_dssp HTTHHHHCTT-SCEEEEEESSCH-HHHHHHHHT--TCSEEEEESSCSSCCTTCSSC-HHHHHHHHHCS--SCEEEECC-
T ss_pred HHHHHhhCCC-CcEEEEEEcCCH-HHHHHHhhC--CCCEEEECCCCCCCccccccC-cHHHHHHhcCC--CCEEEeCCC
Confidence 443332 36 888888999988 899999997 899999999999999988877 99999999999 999999863
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.82 E-value=3.9e-20 Score=165.52 Aligned_cols=141 Identities=11% Similarity=0.106 Sum_probs=108.4
Q ss_pred CCCeEEEeecCCh---------HHHHHHHHHHhcCC--CCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD---------LHVLKWALDHAVSP--GARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENN 119 (257)
Q Consensus 51 ~~~kILVaVDgS~---------~~AL~~Al~~a~~~--~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 119 (257)
.+++||||+|+|+ .+||++|+.++... +++|++|||++....... ...+.. ....+.++.++
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ 227 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA--IELPDF-----DPNLYNNALRG 227 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC--TTCTTC-----CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh--ccCCcc-----cHHHHHHHHHH
Confidence 5799999999997 78999999999877 999999999987532110 111110 11223334445
Q ss_pred HHHHHHHHHHHHhhhCCCe-eEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCce
Q 025166 120 RRRNLLQKYIRLCNDAKQV-TVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCE 198 (257)
Q Consensus 120 ~~~~lL~~~~~~~~~~g~v-~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cP 198 (257)
.+++.|+++.+.+ + + .++..+..|++ +++|++++++.++||||||++|++++.++++| |++++|+++++ ||
T Consensus 228 ~~~~~l~~~~~~~---~-~~~~~~~v~~g~~-~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~G-sv~~~vl~~~~--~p 299 (319)
T 3olq_A 228 QHLIAMKELRQKF---S-IPEEKTHVKEGLP-EQVIPQVCEELNAGIVVLGILGRTGLSAAFLG-NTAEQLIDHIK--CD 299 (319)
T ss_dssp HHHHHHHHHHHHT---T-CCGGGEEEEESCH-HHHHHHHHHHTTEEEEEEECCSCCSTHHHHHH-HHHHHHHTTCC--SE
T ss_pred HHHHHHHHHHHHh---C-CCcccEEEecCCc-HHHHHHHHHHhCCCEEEEeccCccCCcccccc-HHHHHHHhhCC--CC
Confidence 5566666665443 3 3 34567788998 89999999999999999999999999988887 99999999999 99
Q ss_pred EEEEcCCC
Q 025166 199 VTIVHDGK 206 (257)
Q Consensus 199 VLVVr~~~ 206 (257)
|||||+..
T Consensus 300 VLvv~~~~ 307 (319)
T 3olq_A 300 LLAIKPDG 307 (319)
T ss_dssp EEEECCTT
T ss_pred EEEECCCC
Confidence 99998754
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.82 E-value=8.4e-20 Score=162.17 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=104.3
Q ss_pred CCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (257)
Q Consensus 50 ~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~ 127 (257)
..+++||||+|+|+ .+||++|+.++...+++|++|||++... .++.+++
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------------------HHHHHHH
Confidence 45799999999999 9999999999988999999999987532 0012333
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
+.+.+...+ ++++..+..|++ +++|++++++.++||||||++|++++.++++| |++++|+++++ |||||||++.
T Consensus 219 ~~~~l~~~~-~~~~~~~~~g~~-~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~G-s~~~~vl~~~~--~pvLvv~~~~ 292 (294)
T 3loq_A 219 MEEVIGAEG-IEVHVHIESGTP-HKAILAKREEINATTIFMGSRGAGSVMTMILG-STSESVIRRSP--VPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHTT-CCEEEEEECSCH-HHHHHHHHHHTTCSEEEEECCCCSCHHHHHHH-CHHHHHHHHCS--SCEEEECSCT
T ss_pred HHHHHHHcC-CcEEEEEecCCH-HHHHHHHHHhcCcCEEEEeCCCCCCccceeeC-cHHHHHHhcCC--CCEEEECCCC
Confidence 333444457 888899999988 89999999999999999999999999988887 99999999999 9999999764
No 23
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.81 E-value=7.2e-20 Score=162.50 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=101.3
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
.+++||||+|+|+ ..||+||+.+|+..+++|+++||.++.. .++.|+++
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----------------------------~~~~l~~~ 56 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----------------------------HSAALNDL 56 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----------------------------CHHHHHHH
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----------------------------HHHHHHHH
Confidence 5899999999999 9999999999999999999999986300 01123333
Q ss_pred HHHhhhCCCeeEEEEEEe-cCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVE-SKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~-G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+...+ +++++.+.. |++ .++|++++++.++||||||++|++.+.+.++| |++.+|+++++ ||||||+.+
T Consensus 57 ~~~~~~~~-~~~~~~~~~~g~~-~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~g-s~~~~vl~~~~--~PVlvv~~~ 129 (290)
T 3mt0_A 57 AQELREEG-YSVSTNQAWKDSL-HQTIIAEQQAEGCGLIIKQHFPDNPLKKAILT-PDDWKLLRFAP--CPVLMTKTA 129 (290)
T ss_dssp HHHHHHTT-CCEEEEEECSSSH-HHHHHHHHHHHTCSEEEEECCCSCTTSTTSCC-HHHHHHHHHCS--SCEEEECCC
T ss_pred HHHHhhCC-CeEEEEEEeCCCH-HHHHHHHHHhcCCCEEEEecccCCchhhcccC-HHHHHHHhcCC--CCEEEecCC
Confidence 33444567 899998885 667 89999999999999999999999998887777 99999999999 999999854
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.74 E-value=1.1e-17 Score=146.20 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
.+++||||+|+|+ .+|+++|..++...+++|+++||+++. + ..++.++++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----------------~-----------~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----------------A-----------RAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------------H-----------HHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------------H-----------HHHHHHHHH
Confidence 5789999999999 899999999998889999999998542 0 111234444
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
.+.+...+ ++++..+..|++ +++|++++++. ||||||+ ++.++++| |++++|+++++ |||||||
T Consensus 205 ~~~l~~~~-~~~~~~~~~g~~-~~~i~~~a~~~--dliV~G~----~~~~~~~G-s~~~~vl~~~~--~pvlvv~ 268 (268)
T 3ab8_A 205 EAYLRDHG-VEASALVLGGDA-ADHLLRLQGPG--DLLALGA----PVRRLVFG-STAERVIRNAQ--GPVLTAR 268 (268)
T ss_dssp HHHHHHTT-CCEEEEEECSCH-HHHHHHHCCTT--EEEEEEC----CCSCCSSC-CHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHcC-CceEEEEeCCCh-HHHHHHHHHhC--CEEEECC----cccccEec-cHHHHHHhcCC--CCEEEeC
Confidence 44455567 888888889988 89999999987 9999999 45666776 99999999999 9999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=92.22 E-value=0.63 Score=36.84 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCeeEE-EEEEecCchHHHHHHHHhhCC--CcEEEEccCCCCCcccccccCCHHHHHHhhCC
Q 025166 118 NNRRRNLLQKYIRLCNDAKQVTVE-TMLVESKATAKAILDLISVAN--VTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAP 194 (257)
Q Consensus 118 ~~~~~~lL~~~~~~~~~~g~v~ve-~~v~~G~~va~~Il~~A~e~~--aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~ 194 (257)
++.+++.|+...+.+...| +.++ ..+.+++| -.+|.+...+.+ +|-||+-+.-+. ..++|-. ..+++.-+ ..
T Consensus 53 ~~~A~~~l~~sl~aL~~~G-~~a~~G~v~d~~P-l~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~-DwasrAr~-~g 127 (138)
T 2iel_A 53 RRRAEEEAAAAKRALEAQG-IPVEEAKAGDISP-LLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRL-DVHTQAER-FG 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTT-CCCSEEEEEESSH-HHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHT-THHHHGGG-GS
T ss_pred HHHHHHHHHHHHHHHHHcC-CcccccccCCCCh-HHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhc-cHHHHHHh-cC
Confidence 3456666777777777888 8988 99999999 699999999999 999999998765 3555544 88888777 77
Q ss_pred CCceEEEE
Q 025166 195 DYCEVTIV 202 (257)
Q Consensus 195 ~~cPVLVV 202 (257)
+||+-+
T Consensus 128 --vPVlhl 133 (138)
T 2iel_A 128 --LPVIHV 133 (138)
T ss_dssp --SCEEEE
T ss_pred --CCEEEE
Confidence 999865
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=86.66 E-value=4.7 Score=37.69 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 025166 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (257)
Q Consensus 51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~ 128 (257)
..++|+||+.|.. ..+|.++.++....+-++.++||-.... | .+. .+-.+..
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr------g--------~~s------------~~~~~~v 70 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR------G--------RES------------EEEMEFV 70 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC------T--------HHH------------HHHHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC------c--------ccc------------HHHHHHH
Confidence 3578999999998 4444444444445678999999964321 0 000 0011222
Q ss_pred HHHhhhCCCeeEEEEEEe--------cCch--------HHHHHHHHhhCCCcEEEEccCCC
Q 025166 129 IRLCNDAKQVTVETMLVE--------SKAT--------AKAILDLISVANVTSLVMGTKLS 173 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~--------G~~v--------a~~Il~~A~e~~aDLIVmGsrG~ 173 (257)
.+.|...| +++...-+. |..+ ...+.++|++.+++.|++|.|..
T Consensus 71 ~~~~~~lg-i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 71 KRFCVERR-ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHTT-CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHcC-CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 33455556 766554332 1110 24566788889999999998743
No 27
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=85.20 E-value=3.2 Score=33.54 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=46.9
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
+...++..| ++++..+..-....+.+.+++++...+.||.|+-+...+. | -|.-..+ +||+-||.
T Consensus 18 a~~~l~~~g-i~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp----g-----vva~~t~--~PVIgVP~ 82 (157)
T 2ywx_A 18 AVNILKEFG-VEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP----G-----VVASLTT--KPVIAVPV 82 (157)
T ss_dssp HHHHHHHTT-CCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH----H-----HHHTTCS--SCEEEEEE
T ss_pred HHHHHHHcC-CCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH----H-----HHHhccC--CCEEEecC
Confidence 333444457 8888888876655688899998776788998886655443 2 3446777 99999998
No 28
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=83.08 E-value=6.5 Score=32.41 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHHHhhhCCCeeEEEEEEecCchHHHHHHHHh---hCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 127 KYIRLCNDAKQVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 127 ~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~---e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
++.+.+++.| ++++..+..-...-+.+.+|++ +.+++.||.|+-+...+. | -|.-..+ .||+-||
T Consensus 40 ~a~~~L~~~g-I~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp----G-----vvAa~T~--~PVIGVP 107 (181)
T 4b4k_A 40 YACDILDELN-IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP----G-----MVAAKTN--LPVIGVP 107 (181)
T ss_dssp HHHHHHHHTT-CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH----H-----HHHTTCC--SCEEEEE
T ss_pred HHHHHHHHcC-CCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch----h-----hHHhcCC--CCEEEEe
Confidence 3333444557 9999888876554566666664 467899999986655433 3 3345778 9999999
Q ss_pred CCCccccch
Q 025166 204 DGKKVVDGQ 212 (257)
Q Consensus 204 ~~~~~~~~~ 212 (257)
.........
T Consensus 108 v~s~~l~G~ 116 (181)
T 4b4k_A 108 VQSKALNGL 116 (181)
T ss_dssp CCCTTTTTH
T ss_pred cCCCCccch
Confidence 854433333
No 29
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=82.94 E-value=10 Score=33.27 Aligned_cols=38 Identities=18% Similarity=0.031 Sum_probs=25.7
Q ss_pred CCCeEEEeecCCh-HHHHHHHHH-HhcCCCCe-EEEEEEec
Q 025166 51 AASDVYVAVGKDD-LHVLKWALD-HAVSPGAR-IYLVHVFS 88 (257)
Q Consensus 51 ~~~kILVaVDgS~-~~AL~~Al~-~a~~~~a~-l~LlHV~~ 88 (257)
..++|+|++.|.. --+|-+.+. .....+-+ +.++||-.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~ 63 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNH 63 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEEC
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEEC
Confidence 3578999999998 444444443 33334667 99999964
No 30
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=82.47 E-value=5.6 Score=32.56 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=48.4
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHh---hCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~---e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
...++..| ++++..+..-+..-+.+.+|++ +.+++.||.|+-+-..+. | -|.-..+ +||+-||..
T Consensus 32 ~~~l~~~g-i~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp----g-----vvA~~t~--~PVIgVPv~ 99 (173)
T 4grd_A 32 VAILQEFG-VPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP----G-----MLAAKTT--VPVLGVPVA 99 (173)
T ss_dssp HHHHHHTT-CCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH----H-----HHHHHCC--SCEEEEEEC
T ss_pred HHHHHHcC-CCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch----h-----hheecCC--CCEEEEEcC
Confidence 33444557 8988888776554566666654 467899999887655443 2 2446778 999999975
Q ss_pred Cccccchhh
Q 025166 206 KKVVDGQKV 214 (257)
Q Consensus 206 ~~~~~~~~~ 214 (257)
.......++
T Consensus 100 ~~~l~G~ds 108 (173)
T 4grd_A 100 SKYLKGVDS 108 (173)
T ss_dssp CTTTTTHHH
T ss_pred CCCCCchhH
Confidence 444444443
No 31
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=80.52 E-value=9.4 Score=35.70 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETM 143 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~ 143 (257)
-.||..|++.+...+..|..|+++++.... .+ .... .-.-+-|..+.+.+.+.| +++ .
T Consensus 52 N~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~--------~~r~--------~Fl~~sL~~L~~~L~~~G-~~L--~ 109 (482)
T 2xry_A 52 NWALLFSRAIAKEANVPVVVVFCLTDEFLE---AG--------IRQY--------EFMLKGLQELEVSLSRKK-IPS--F 109 (482)
T ss_dssp CHHHHHHHHHHHHHTSCEEEEEEECTTGGG---SC--------HHHH--------HHHHHHHHHHHHHHHHTT-CCE--E
T ss_pred cHHHHHHHHHHHHcCCcEEEEEEeChhhhc---cC--------HHHH--------HHHHHHHHHHHHHHHHcC-CcE--E
Confidence 678888887765556789999999875321 01 0000 112233555555555556 553 5
Q ss_pred EEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 144 LVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 144 v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
+..|++ .+.|.+++++.+++.|+.-..... ..+ ..-..|.+... |+|..+....
T Consensus 110 v~~g~~-~~~l~~l~~~~~~~~V~~~~~~~~-~~~-----~~~~~v~~~lg--i~~~~~~~~~ 163 (482)
T 2xry_A 110 FLRGDP-GEKISRFVKDYNAGTLVTDFSPLR-IKN-----QWIEKVISGIS--IPFFEVDAHN 163 (482)
T ss_dssp EEESCH-HHHHHHHHHHTTCSEEEEECCCSH-HHH-----HHHHHHHHHCC--SCEEEECCSS
T ss_pred EEeCCH-HHHHHHHHHHcCCCEEEEecccch-hHH-----HHHHHHHHHcC--CEEEEEeCCE
Confidence 567998 799999999999999997543221 111 22234445457 9998887643
No 32
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=78.24 E-value=13 Score=30.13 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHhh---CCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e---~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
....++..| +.++..+..-....+.+.+++++ .+++.||.|+-+...+. | -|.-+.+ +||+=||.
T Consensus 24 a~~~l~~~g-i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~ 91 (166)
T 3oow_A 24 CCDILDNLG-IGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP----G-----MVAAKTT--LPVLGVPV 91 (166)
T ss_dssp HHHHHHHTT-CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH----H-----HHHHTCS--SCEEEEEC
T ss_pred HHHHHHHcC-CCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH----H-----HHHhccC--CCEEEeec
Confidence 333444457 88888887665545777777654 46899999886655443 2 3456778 99999997
Q ss_pred CCcc
Q 025166 205 GKKV 208 (257)
Q Consensus 205 ~~~~ 208 (257)
....
T Consensus 92 ~~~~ 95 (166)
T 3oow_A 92 KSST 95 (166)
T ss_dssp CCTT
T ss_pred CcCC
Confidence 5443
No 33
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=77.79 E-value=10 Score=36.03 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETM 143 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~ 143 (257)
-.||..|++.+...+..|+.|+|+++...... .+ . ..-.+ +.+-|..+.+.+.+.| +. ..
T Consensus 53 N~AL~~A~~~a~~~~~pVl~vfildp~~~~~~-~~--------~-~r~~F-------L~~sL~dL~~~L~~lG-~~--L~ 112 (506)
T 3umv_A 53 NWALLHAAGLAAASASPLAVAFALFPRPFLLS-AR--------R-RQLGF-------LLRGLRRLAADAAARH-LP--FF 112 (506)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECCCTTCGGG-CC--------H-HHHHH-------HHHHHHHHHHHHHHTT-CC--EE
T ss_pred cHHHHHHHHhhhhcCCCEEEEEeccchhhccC-CC--------H-HHHHH-------HHHHHHHHHHHHHHcC-Cc--eE
Confidence 67888888877656788999999987632111 01 0 00111 2223444444455555 44 46
Q ss_pred EEecCchHHHHHHHHhhCCCcEEEEccCCCCCccc--ccccCCHHHHHHh-hCCCCceEEEEcCCCc
Q 025166 144 LVESKATAKAILDLISVANVTSLVMGTKLSPRSRL--FTKKLSKGEFVKK-NAPDYCEVTIVHDGKK 207 (257)
Q Consensus 144 v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r--~~lGgSVs~~Vv~-~A~~~cPVLVVr~~~~ 207 (257)
++.|++ .+. .+++++.+|+.|+. . ...... ..-- .|...+-. ... |+|..+.....
T Consensus 113 v~~G~p-~~v-~~L~~~~~a~~V~~-d--~ep~~~~r~rD~-~V~~~l~~~~~g--i~~~~~~~~~l 171 (506)
T 3umv_A 113 LFTGGP-AEI-PALVQRLGASTLVA-D--FSPLRPVREALD-AVVGDLRREAPG--VAVHQVDAHNV 171 (506)
T ss_dssp EESSCT-THH-HHHHHHTTCSEEEE-C--CCCCHHHHHHHH-HHHHHHHHHCTT--SEEEEECCSCS
T ss_pred EEecCh-HHH-HHHHHhcCCCEEEe-c--cChhHHHHHHHH-HHHHHHhhccCC--eEEEEeCCcEE
Confidence 678999 688 99999999999996 2 222221 1111 23222221 345 99988865443
No 34
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=77.18 E-value=11 Score=30.78 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHH---hhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLI---SVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A---~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
+...++..| ++++..+..-....+.+.+++ ++.+++.||.|+-+...+. | -|.-+.+ +||+=||.
T Consensus 25 a~~~l~~~g-i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~ 92 (169)
T 3trh_A 25 AFTELKSLG-IPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA----G-----TIAAHTL--KPVIGVPM 92 (169)
T ss_dssp HHHHHHHTT-CCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH----H-----HHHHTCS--SCEEEEEC
T ss_pred HHHHHHHcC-CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH----H-----HHHhcCC--CCEEEeec
Confidence 333444557 888888876554446666665 4568998888886655433 2 3456778 99999997
Q ss_pred CC
Q 025166 205 GK 206 (257)
Q Consensus 205 ~~ 206 (257)
..
T Consensus 93 ~~ 94 (169)
T 3trh_A 93 AG 94 (169)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 35
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=76.79 E-value=10 Score=30.97 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHhh---CCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e---~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
...++..| ++++..+..-....+.+.+++++ .+++.||.|+-+...+. | -|.-.++ +||+-||..
T Consensus 31 ~~~L~~~G-i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~~ 98 (170)
T 1xmp_A 31 CDILDELN-IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP----G-----MVAAKTN--LPVIGVPVQ 98 (170)
T ss_dssp HHHHHHTT-CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH----H-----HHHTTCC--SCEEEEEEC
T ss_pred HHHHHHcC-CCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH----H-----HHHhccC--CCEEEeeCC
Confidence 33444457 88888887665445777777754 45898888886655443 2 3446778 999999975
Q ss_pred Cc
Q 025166 206 KK 207 (257)
Q Consensus 206 ~~ 207 (257)
..
T Consensus 99 ~~ 100 (170)
T 1xmp_A 99 SK 100 (170)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 36
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=75.62 E-value=12 Score=30.72 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHh---hCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~---e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
....++..| ++++..+..-....+.+.++++ +.+++.||.|+-+...+. | -|.-+.+ +||+=||.
T Consensus 31 a~~~L~~~G-i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~ 98 (174)
T 3kuu_A 31 AADVLTTLN-VPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP----G-----MLAAKTL--VPVLGVPV 98 (174)
T ss_dssp HHHHHHHTT-CCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH----H-----HHHHTCS--SCEEEEEE
T ss_pred HHHHHHHcC-CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH----H-----HHHhccC--CCEEEeeC
Confidence 333444557 8888888776554577777764 467899998886655433 2 3446778 99999987
Q ss_pred CC
Q 025166 205 GK 206 (257)
Q Consensus 205 ~~ 206 (257)
..
T Consensus 99 ~~ 100 (174)
T 3kuu_A 99 QS 100 (174)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 37
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=75.01 E-value=12 Score=30.78 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHhh---CCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e---~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
...+...| ++++..+..-+..-+.+.+|+++ .+++.||.|+-+-..+. | -|.-.++ +||+-||..
T Consensus 41 ~~~L~~~G-i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~~ 108 (182)
T 1u11_A 41 DALLTELE-IPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP----G-----MCAAWTR--LPVLGVPVE 108 (182)
T ss_dssp HHHHHHTT-CCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH----H-----HHHHHCS--SCEEEEEEC
T ss_pred HHHHHHcC-CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH----H-----HHHhccC--CCEEEeeCC
Confidence 33444457 88888887665545777777754 45898888886655443 2 3446778 999999975
Q ss_pred Cc
Q 025166 206 KK 207 (257)
Q Consensus 206 ~~ 207 (257)
..
T Consensus 109 ~~ 110 (182)
T 1u11_A 109 SR 110 (182)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 38
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=72.63 E-value=16 Score=29.55 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHh---hCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~---e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
....++..| ++++..+..-+...+.+.++++ +.+++.||.|+-+...+. | -|.-..+ +||+=||.
T Consensus 22 a~~~l~~~g-i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~ 89 (163)
T 3ors_A 22 SCNMLDYFE-IPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP----G-----MVASLTT--LPVIGVPI 89 (163)
T ss_dssp HHHHHHHTT-CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH----H-----HHHHHCS--SCEEEEEE
T ss_pred HHHHHHHcC-CCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH----H-----HHHhccC--CCEEEeeC
Confidence 333444457 8888888766554567767664 456898888886655433 2 3446788 99999987
Q ss_pred CCc
Q 025166 205 GKK 207 (257)
Q Consensus 205 ~~~ 207 (257)
...
T Consensus 90 ~~~ 92 (163)
T 3ors_A 90 ETK 92 (163)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 39
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=72.17 E-value=15 Score=29.54 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=44.9
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHHHhh---C-CCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDLISV---A-NVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e---~-~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
+...++..| ++++..+..-...-+.+.+++++ . +++.||.|+-+...+. | -|.-..+ +||+=||
T Consensus 21 a~~~l~~~g-i~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP 88 (159)
T 3rg8_A 21 IASELKTFG-IEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS----G-----FVDGFVK--GATIACP 88 (159)
T ss_dssp HHHHHHHTT-CEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH----H-----HHHHHSS--SCEEECC
T ss_pred HHHHHHHcC-CCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH----H-----HHHhccC--CCEEEee
Confidence 333444457 88888887665545777777643 2 5899999986655443 2 3446788 9999999
Q ss_pred CCC
Q 025166 204 DGK 206 (257)
Q Consensus 204 ~~~ 206 (257)
...
T Consensus 89 ~~~ 91 (159)
T 3rg8_A 89 PPS 91 (159)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 40
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=71.92 E-value=14 Score=30.25 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHhhhCCCeeEEEEEEecCchHHHHHHH---HhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 128 YIRLCNDAKQVTVETMLVESKATAKAILDL---ISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 128 ~~~~~~~~g~v~ve~~v~~G~~va~~Il~~---A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
+...++..| ++++..+..-....+.+.++ +++.+++.||.|+-+...+. | -|.-..+ +||+-||.
T Consensus 26 a~~~L~~~g-i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~ 93 (174)
T 3lp6_A 26 AAAALAEFD-IPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP----G-----MVAAATP--LPVIGVPV 93 (174)
T ss_dssp HHHHHHHTT-CCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH----H-----HHHHHCS--SCEEEEEE
T ss_pred HHHHHHHcC-CCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH----H-----HHHhccC--CCEEEeeC
Confidence 333444457 88888887654434666666 45568999998886655433 2 3446788 99999987
Q ss_pred CCcc
Q 025166 205 GKKV 208 (257)
Q Consensus 205 ~~~~ 208 (257)
....
T Consensus 94 ~~~~ 97 (174)
T 3lp6_A 94 PLGR 97 (174)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5443
No 41
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=71.68 E-value=14 Score=31.77 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 150 TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 150 va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
++..|.+++++.++|+|++|....++.. +.++.+|..... .|.+
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~-----~~v~p~lA~~L~--~~~v 147 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDC-----NQTGQMTAGFLD--WPQG 147 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CCEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCch-----hhHHHHHHHHhC--CCcc
Confidence 3567888888888999999998765432 255555555555 5543
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=70.66 E-value=19 Score=29.68 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=45.0
Q ss_pred HHHhhhCCCeeEEEEEEecCchHHHHHHHHh---hCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 129 IRLCNDAKQVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 129 ~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~---e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
...++..| ++++..+..-....+.+.++++ +.+++.||.|+-+...+. | -|.-.++ +||+-||..
T Consensus 33 ~~~L~~~G-i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp----g-----vvA~~t~--~PVIgVP~~ 100 (183)
T 1o4v_A 33 AEILEEFG-IDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP----G-----MVASITH--LPVIGVPVK 100 (183)
T ss_dssp HHHHHHTT-CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH----H-----HHHHHCS--SCEEEEEEC
T ss_pred HHHHHHcC-CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH----H-----HHHhccC--CCEEEeeCC
Confidence 33444457 8988888765444466666665 456898888886655443 2 3446788 999999975
Q ss_pred Cc
Q 025166 206 KK 207 (257)
Q Consensus 206 ~~ 207 (257)
..
T Consensus 101 ~~ 102 (183)
T 1o4v_A 101 TS 102 (183)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=69.56 E-value=16 Score=31.30 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 150 TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 150 va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
++..|.+++++.++|+|++|....++.. +.++.+|..... .|.+
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d~~~-----~~v~p~lA~~L~--~~~v 144 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAIDNDM-----NATGQMLAAILG--WAQA 144 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCch-----hhHHHHHHHHhC--CCcc
Confidence 4667888888888999999998765432 245555555555 5543
No 44
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=68.84 E-value=33 Score=29.56 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 150 TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 150 va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
++..|.+++++.++|+|++|....++.. +.++.+|..... .|.+
T Consensus 100 ~a~~La~~i~~~~~dlVl~G~~s~d~~~-----~~v~p~lA~~L~--~~~v 143 (264)
T 1o97_C 100 VGRILTEVIKKEAPDMVFAGVQSSDQAY-----ASTGISVASYLN--WPHA 143 (264)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CCEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCch-----hhHHHHHHHHhC--CCcc
Confidence 3567888888889999999998765332 245555555554 4443
No 45
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=67.43 E-value=26 Score=33.39 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcC--CCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEE
Q 025166 64 LHVLKWALDHAVS--PGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVE 141 (257)
Q Consensus 64 ~~AL~~Al~~a~~--~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve 141 (257)
..||..|++.+.. .+..|..|+++++........+ .... .+ .-+-|..+.+.+.+.| +.
T Consensus 44 N~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~--------~~r~-~F-------l~~sL~~L~~~L~~~G-~~-- 104 (543)
T 2wq7_A 44 NPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVG--------ANRW-RF-------LQQTLEDLDNQLRKLN-SR-- 104 (543)
T ss_dssp CHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSC--------HHHH-HH-------HHHHHHHHHHHHHHTT-CC--
T ss_pred HHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCC--------HHHH-HH-------HHHHHHHHHHHHHHCC-Ce--
Confidence 6788888876643 4667999999987532110111 1011 11 2233445555555556 54
Q ss_pred EEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 142 TMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 142 ~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
..++.|++ .+.|.+++++.+++.|+.-.. ........ - .-....++... |+|..+....
T Consensus 105 L~v~~g~~-~~~l~~l~~~~~~~~v~~~~~-~~p~~~~r-d-~~v~~~~~~~g--i~~~~~~~~~ 163 (543)
T 2wq7_A 105 LFVVRGKP-AEVFPRIFKSWRVEMLTFETD-IEPYSVTR-D-AAVQKLAKAEG--VRVETHCSHT 163 (543)
T ss_dssp CEEEESCH-HHHHHHHHHHTTEEEEEEECC-CSHHHHHH-H-HHHHHHHHHHT--CEEEEECCSS
T ss_pred EEEEeCCH-HHHHHHHHHHcCCCEEEEecC-cCHHHHHH-H-HHHHHHHHHcC--CEEEEecCCE
Confidence 35567998 799999999999999887533 12222111 1 12223445556 9998887663
No 46
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=66.80 E-value=10 Score=27.81 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCcEEEEccC----C-CCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 151 AKAILDLISVANVTSLVMGTK----L-SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 151 a~~Il~~A~e~~aDLIVmGsr----G-~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.|.+++++++++.||||-- | .+...+ ..- ..++.+-+. + +||..+-..
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~-~~~-~f~~~L~~~-~--lpV~~~DER 94 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKESAQAG-KVL-PLVEALRAR-G--VEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSS-TTH-HHHHHHHHT-T--CEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHH-HHH-HHHHHHhcC-C--CCEEEECCC
Confidence 578999999999999999932 2 111111 111 456677666 7 999988543
No 47
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=65.45 E-value=11 Score=33.38 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEEEE
Q 025166 66 VLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLV 145 (257)
Q Consensus 66 AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~v~ 145 (257)
++-.|..+....+++|.|+-|++.. ...+.+++.++++.+.+.-. ... .++
T Consensus 181 mlllAylL~~nW~A~I~L~~vV~de-------------------------~a~~~a~~~l~~Lv~~~Ri~--a~~--~vv 231 (294)
T 3g40_A 181 ALLIAYKLKSNWKASLSFMTFAPTA-------------------------IQAQAAENFLQSLAELARIP--NVK--MQV 231 (294)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSH-------------------------HHHHHHHHHHHHHHHHHTCC--SCE--EEE
T ss_pred HHHHHHHHhhCcCCeEEEEEecCCH-------------------------HHHHHHHHHHHHHHHHhcCC--ceE--EEe
Confidence 3333333333349999999998642 11234566677777766532 233 233
Q ss_pred ecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCCc
Q 025166 146 ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 207 (257)
Q Consensus 146 ~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~~ 207 (257)
. .+ -..|+..+ -+|||+++|-...-.+ -....++..+. ...+.|++...
T Consensus 232 ~-~~-F~~il~~s--~~ADL~flGl~~~~df-------~~~~~~~~~~~--ssc~f~~dsg~ 280 (294)
T 3g40_A 232 L-RE-NPIKSSKL--PFASLHIFSLDPNPDL-------DLARHLMEKAG--SSCIFALDSGE 280 (294)
T ss_dssp E-SS-CTTTSSSC--CCCSEEEEECCSSCCH-------HHHHHHHHHHT--SEEEEEECCSC
T ss_pred c-Cc-hHHHHhhC--cCCCEEEEcCCCCCcH-------HHHHHHHHhcC--CeEEEEecCch
Confidence 4 66 36666555 4699999998554333 34557778887 77888887543
No 48
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=61.02 E-value=72 Score=29.83 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=25.9
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecC
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSP 89 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~ 89 (257)
.++|+|++-|.. .-++.|+.+ .+.+|+.+|+.-.
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~G 45 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLG 45 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcC
Confidence 479999999888 566666644 2789999998643
No 49
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=59.25 E-value=18 Score=34.53 Aligned_cols=116 Identities=12% Similarity=-0.010 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhC---CCeeE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDA---KQVTV 140 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~---g~v~v 140 (257)
-.||..|++.+. .+..|+.|+|+++........| .. .- .-+.+-|..+.+.+.+. | +.
T Consensus 19 N~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~--------~~-r~-------~Fl~~sL~~L~~~L~~~~~~G-~~- 79 (538)
T 3tvs_A 19 NPALLAALADKD-QGIALIPVFIFDGESAGTKNVG--------YN-RM-------RFLLDSLQDIDDQLQAATDGR-GR- 79 (538)
T ss_dssp CHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCC--------HH-HH-------HHHHHHHHHHHHHGGGSCSSS-SC-
T ss_pred hHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCC--------HH-HH-------HHHHHHHHHHHHHHHHhhcCC-Ce-
Confidence 356666665442 4458999999987532111111 00 01 11223355555556655 5 43
Q ss_pred EEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 141 ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 141 e~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
..+..|++ .+.|.+++++.+|+.|+. .+......+.. - ......++... |++..+...
T Consensus 80 -L~v~~G~~-~~vl~~L~~~~~a~~V~~-n~~~~~~~~~R-D-~~v~~~l~~~g--i~~~~~~~~ 137 (538)
T 3tvs_A 80 -LLVFEGEP-AYIFRRLHEQVRLHRICI-EQDCEPIWNER-D-ESIRSLCRELN--IDFVEKVSH 137 (538)
T ss_dssp -CEEEESCH-HHHHHHHHHHHCEEEECE-ECCCCGGGHHH-H-HHHHHHHHHSS--CCCCEECCS
T ss_pred -EEEEeCCH-HHHHHHHHHHcCCCEEEE-ccCCCHHHHHH-H-HHHHHHHHhCC--ceEEEecCC
Confidence 45678999 799999999999999986 33333322111 1 12223445556 777666543
No 50
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=58.91 E-value=24 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCeEEEeecCC-----h--HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 52 ASDVYVAVGKD-----D--LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 52 ~~kILVaVDgS-----~--~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
++.|||=++-. + .++|..|.+++...+.++++|-+-+
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~ 46 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGT 46 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 46788877742 3 7889999888876788888887643
No 51
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=57.13 E-value=56 Score=30.44 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETM 143 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~ 143 (257)
..||..|++ .+..++.|+++++........+... ...... .+ ..+-|..+.+.+.+.| +.+ .
T Consensus 21 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~---~~~~r~-~F-------l~~sL~~L~~~L~~~G-~~L--~ 82 (489)
T 1np7_A 21 HEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAK---TGPWRS-NF-------LQQSVQNLAESLQKVG-NKL--L 82 (489)
T ss_dssp CHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBS---SCHHHH-HH-------HHHHHHHHHHHHHHTT-CCE--E
T ss_pred HHHHHHHHh----cCCCEEEEEEECchhhcccccccCC---CCHHHH-HH-------HHHHHHHHHHHHHHCC-CcE--E
Confidence 456776654 3468889999987532110000000 001111 11 2233455555555556 553 5
Q ss_pred EEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 144 LVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 144 v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
++.|++ .+.|.+++++.+++.|+.-..- ....+..-- .+.. .+.... |+|..+....
T Consensus 83 v~~g~~-~~~l~~l~~~~~~~~V~~~~~~-~~~~~~rd~-~v~~-~l~~~g--i~~~~~~~~~ 139 (489)
T 1np7_A 83 VTTGLP-EQVIPQIAKQINAKTIYYHREV-TQEELDVER-NLVK-QLTILG--IEAKGYWGST 139 (489)
T ss_dssp EEESCH-HHHHHHHHHHTTEEEEEEECCC-SHHHHHHHH-HHHH-HHHHHT--CEEEEECCSS
T ss_pred EEECCH-HHHHHHHHHHcCCCEEEEeccc-CHHHHHHHH-HHHH-HHHhcC--CeEEEecCCe
Confidence 567998 7999999999999988875332 222211211 3333 334456 8888876654
No 52
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=56.92 E-value=38 Score=31.50 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=42.8
Q ss_pred HHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHH---hhCCC-cEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEE
Q 025166 125 LQKYIRLCNDAKQVTVETMLVESKATAKAILDLI---SVANV-TSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 200 (257)
Q Consensus 125 L~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A---~e~~a-DLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVL 200 (257)
++++...+...| ++++..+..-+-.-+.+.+++ ++.++ +.||.|+-+.+.+. | -|.-.++ +||+
T Consensus 281 ~~~a~~~l~~~g-i~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp----g-----vva~~t~--~PVI 348 (425)
T 2h31_A 281 CEKIKKACGNFG-IPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG----P-----VMSGNTA--YPVI 348 (425)
T ss_dssp HHHHHHHHHHTT-CCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH----H-----HHHHHCS--SCEE
T ss_pred HHHHHHHHHHcC-CceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH----h-----HHhccCC--CCEE
Confidence 334444455567 888887776544345555554 45567 57777776554433 2 3446778 9999
Q ss_pred EEcCC
Q 025166 201 IVHDG 205 (257)
Q Consensus 201 VVr~~ 205 (257)
-||..
T Consensus 349 gvP~~ 353 (425)
T 2h31_A 349 SCPPL 353 (425)
T ss_dssp ECCCC
T ss_pred EeeCc
Confidence 99974
No 53
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=56.07 E-value=28 Score=33.18 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=43.3
Q ss_pred HHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 125 LQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 125 L~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
|..+.+.+.+.| +. ..+..|++ .+.|.+++++++|+.|+.-.. .....+.. - .-....++... |++..+..
T Consensus 70 L~~L~~~L~~~G-~~--L~v~~G~~-~~vl~~L~~~~~~~~V~~n~~-~~p~~~~R-D-~~v~~~l~~~g--I~~~~~~~ 140 (537)
T 3fy4_A 70 LKDLDSSLKKLG-SR--LLVFKGEP-GEVLVRCLQEWKVKRLCFEYD-TDPYYQAL-D-VKVKDYASSTG--VEVFSPVS 140 (537)
T ss_dssp HHHHHHHHHHTT-CC--CEEEESCH-HHHHHHHHTTSCEEEEEECCC-CSHHHHHH-H-HHHHHHHHHTT--CEEECCCC
T ss_pred HHHHHHHHHHcC-Cc--eEEEECCH-HHHHHHHHHHcCCCEEEEecc-ccHHHHHH-H-HHHHHHHHHcC--CeEEEecC
Confidence 444444455545 43 45677998 799999999999999987543 22222111 1 12223445556 88876654
Q ss_pred C
Q 025166 205 G 205 (257)
Q Consensus 205 ~ 205 (257)
.
T Consensus 141 ~ 141 (537)
T 3fy4_A 141 H 141 (537)
T ss_dssp S
T ss_pred C
Confidence 4
No 54
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=52.55 E-value=28 Score=32.43 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhCCCeeEEEEEE--ecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEE
Q 025166 124 LLQKYIRLCNDAKQVTVETMLV--ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 201 (257)
Q Consensus 124 lL~~~~~~~~~~g~v~ve~~v~--~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLV 201 (257)
-|..+.+.+.+.| +.+....+ .|++ .+.|.+++++.+++.|+.-..- ....+ ..-..|.+.+.. |+|..
T Consensus 57 sL~~L~~~L~~~G-~~L~v~~~~~~g~~-~~~l~~l~~~~~~~~v~~~~~~-~~~~~-----~rd~~v~~~l~~-i~~~~ 127 (471)
T 1dnp_A 57 QLNGLQIALAEKG-IPLLFREVDDFVAS-VEIVKQVCAENSVTHLFYNYQY-EVNER-----ARDVEVERALRN-VVCEG 127 (471)
T ss_dssp HHHHHHHHHHHTT-CCEEEEECSSHHHH-HHHHHHHHHHHTCCEEEEECCC-SHHHH-----HHHHHHHHHCTT-SEEEE
T ss_pred HHHHHHHHHHHCC-CeEEEEEccCCCCH-HHHHHHHHHHcCCCEEEEeccc-CchHH-----HHHHHHHHHhcC-cEEEE
Confidence 3445555555556 65433222 6888 7999999999999998874322 22221 122344444433 77776
Q ss_pred EcCC
Q 025166 202 VHDG 205 (257)
Q Consensus 202 Vr~~ 205 (257)
+...
T Consensus 128 ~~~~ 131 (471)
T 1dnp_A 128 FDDS 131 (471)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 6544
No 55
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.21 E-value=14 Score=27.44 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 125 LQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 125 L~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
|.+|.......| +++.+.-..-.- .+.|-++.+++++..+|+--..... . --+-+.++... .-|||+-
T Consensus 15 lrkfkdiikkng-fkvrtvrspqel-kdsieelvkkynativvvvvddkew------a-ekairfvkslg--aqvliii 82 (134)
T 2l69_A 15 LRKFKDIIKKNG-FKVRTVRSPQEL-KDSIEELVKKYNATIVVVVVDDKEW------A-EKAIRFVKSLG--AQVLIII 82 (134)
T ss_dssp HHHHHHHHHHTT-CEEEEECSHHHH-HHHHHHHTTCCCCEEEEEECSSHHH------H-HHHHHHHHHHC--CCCEEEE
T ss_pred HHHHHHHHHhcC-ceEEEecCHHHH-HHHHHHHHHHhCCeEEEEEEccHHH------H-HHHHHHHHhcC--CeEEEEE
Confidence 556666666667 777665433333 6778888888998888876543221 1 23334455555 5666653
No 56
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=50.69 E-value=46 Score=30.45 Aligned_cols=72 Identities=6% Similarity=-0.023 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 124 LLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 124 lL~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
-|..+.+.+.+.| ++ ..+..|++ .+.|.+++++.+++.|+.-..- ....+ ..-..|.+.+. |+|..+.
T Consensus 53 sL~~l~~~L~~~g-~~--l~~~~g~~-~~~l~~l~~~~~~~~v~~~~~~-~~~~~-----~rd~~v~~~l~--i~~~~~~ 120 (420)
T 2j07_A 53 NVRALREAYRARG-GA--LWVLEGLP-WEKVPEAARRLKAKAVYALTSH-TPYGR-----YRDGRVREALP--VPLHLLP 120 (420)
T ss_dssp HHHHHHHHHHHTT-CC--EEEEESCH-HHHHHHHHHHTTCSEEEEECCC-SHHHH-----HHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHHHHHHCC-Ce--EEEEeCCH-HHHHHHHHHHcCCCEEEEeccc-ChhHH-----HHHHHHHHHcC--CeEEEeC
Confidence 3455555555556 55 45567998 7999999999999998874322 22221 11223444445 8998887
Q ss_pred CCCc
Q 025166 204 DGKK 207 (257)
Q Consensus 204 ~~~~ 207 (257)
....
T Consensus 121 ~~~l 124 (420)
T 2j07_A 121 APHL 124 (420)
T ss_dssp CCCS
T ss_pred CCEE
Confidence 6543
No 57
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=48.90 E-value=48 Score=29.29 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=23.7
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
+.+|+|++-|.. .-.|..+.+.....+-++.++|+-.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDt 84 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDT 84 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEEC
Confidence 568999999988 4444444443332345788888853
No 58
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=46.28 E-value=47 Score=30.95 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETM 143 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~ 143 (257)
..||..|++.. ..|..|+++++........+ .... .+ ..+-|..+.+.+.+.| ++ ..
T Consensus 18 n~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~~--------~~r~-~f-------l~~sL~~L~~~L~~~G-~~--L~ 74 (484)
T 1owl_A 18 NIGLAAARAQS----AQLIGLFCLDPQILQSADMA--------PARV-AY-------LQGCLQELQQRYQQAG-SR--LL 74 (484)
T ss_dssp CHHHHHHHHHC----SCEEEEEEECHHHHTCTTCC--------HHHH-HH-------HHHHHHHHHHHHHHHT-SC--EE
T ss_pred hHHHHHHHhcC----CCEEEEEEEcchhhcCCCCC--------HHHH-HH-------HHHHHHHHHHHHHHCC-Ce--EE
Confidence 45677776532 37889999976421100011 0011 11 1223444444444446 54 35
Q ss_pred EEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 144 LVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 144 v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
++.|++ .+.|.+++++++++.|+.-..- ....+..-- .+. ..+.... |+|..+...
T Consensus 75 v~~g~~-~~~l~~l~~~~~~~~v~~~~~~-~p~~~~rd~-~v~-~~l~~~g--i~~~~~~~~ 130 (484)
T 1owl_A 75 LLQGDP-QHLIPQLAQQLQAEAVYWNQDI-EPYGRDRDG-QVA-AALKTAG--IRAVQLWDQ 130 (484)
T ss_dssp EEESCH-HHHHHHHHHHTTCSEEEEECCC-SHHHHHHHH-HHH-HHHHHTT--CEEEEECCS
T ss_pred EEeCCH-HHHHHHHHHHcCCCEEEEeccC-ChhHHHHHH-HHH-HHHHHcC--cEEEEecCC
Confidence 567998 7999999999999998874322 222211111 333 3344556 898888654
No 59
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=46.02 E-value=89 Score=29.45 Aligned_cols=137 Identities=8% Similarity=-0.001 Sum_probs=72.4
Q ss_pred cCCCCCeEEEeecCCh----HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcc-cccccccccHHHHHHHHHHHHHHHH
Q 025166 48 RDAAASDVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPV-GRLARSQLNQEQVRVYVNEENNRRR 122 (257)
Q Consensus 48 ~~~~~~kILVaVDgS~----~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~ 122 (257)
+.|+.+.+||=+=.+- ..||..|++ .+..|..|+++++........ +... ...... . -+-
T Consensus 35 ~~~~~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~---~~~~r~-~-------Fl~ 99 (525)
T 2j4d_A 35 KRKGKGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPK---TGALRG-G-------FLM 99 (525)
T ss_dssp CCTTCCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBS---SCHHHH-H-------HHH
T ss_pred cCCCCCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCC---CCHHHH-H-------HHH
Confidence 4555566676664333 567777765 345799999998743211000 0000 001111 1 122
Q ss_pred HHHHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhC-CCCceEEE
Q 025166 123 NLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNA-PDYCEVTI 201 (257)
Q Consensus 123 ~lL~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A-~~~cPVLV 201 (257)
+-|..+.+.+.+.| +. ..++.|++ .+.|.+++++.+++.|+.-..- ....+..-- .+...+-..- + |+|..
T Consensus 100 ~sL~~L~~~L~~~G-~~--L~v~~g~~-~~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd~-~v~~~l~~~gv~--i~~~~ 171 (525)
T 2j4d_A 100 ECLVDLRKNLMKRG-LN--LLIRSGKP-EEILPSLAKDFGARTVFAHKET-CSEEVDVER-LVNQGLKRVGNS--TKLEL 171 (525)
T ss_dssp HHHHHHHHHHHHTT-CC--CEEEESCH-HHHHHHHHHHHTCSEEEEECCC-SHHHHHHHH-HHHHHHHTTCSS--CEEEE
T ss_pred HHHHHHHHHHHHcC-Ce--EEEEeCCH-HHHHHHHHHHcCCCEEEEeccC-CHHHHHHHH-HHHHHHHhcCCc--eEEEE
Confidence 33445555555556 54 35567998 7999999999999998875332 222221211 3333332111 2 67777
Q ss_pred EcCCCc
Q 025166 202 VHDGKK 207 (257)
Q Consensus 202 Vr~~~~ 207 (257)
+.....
T Consensus 172 ~~~~~L 177 (525)
T 2j4d_A 172 IWGSTM 177 (525)
T ss_dssp ECCSCS
T ss_pred ecCCEE
Confidence 766533
No 60
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=43.47 E-value=1.5e+02 Score=27.71 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETM 143 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~ 143 (257)
..||..|++. + .+..|+|+++........+ . ....+ +-+-|..+.+.+.+.| +++ .
T Consensus 27 N~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~--------~-~~~~f-------l~~sL~~L~~~L~~~G-~~L--~ 82 (509)
T 1u3d_A 27 NPALAAAVRA----G-PVIALFVWAPEEEGHYHPG--------R-VSRWW-------LKNSLAQLDSSLRSLG-TCL--I 82 (509)
T ss_dssp CHHHHHHHHH----S-CEEEEEEECGGGGTTCCCC--------H-HHHHH-------HHHHHHHHHHHHHHTT-CCE--E
T ss_pred hHHHHHHHhC----C-CEEEEEEECchhcccCCcc--------h-HHHHH-------HHHHHHHHHHHHHHCC-CeE--E
Confidence 5678877764 2 5778889876532111101 0 00001 2233555555555556 653 4
Q ss_pred EEe-cCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 144 LVE-SKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 144 v~~-G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
++. |++ .+.|.+++++++++.|+.-..- .......-- .+ ...++... |+|..+....
T Consensus 83 v~~~g~~-~~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd~-~v-~~~l~~~g--i~~~~~~~~~ 140 (509)
T 1u3d_A 83 TKRSTDS-VASLLDVVKSTGASQIFFNHLY-DPLSLVRDH-RA-KDVLTAQG--IAVRSFNADL 140 (509)
T ss_dssp EEECSCH-HHHHHHHHHHHTCCEEEEECCC-SHHHHHHHH-HH-HHHHHTTT--CEEEEECCSC
T ss_pred EEeCCCH-HHHHHHHHHHcCCCEEEEeccc-CHHHHHHHH-HH-HHHHHHcC--cEEEEECCCE
Confidence 455 566 7999999999999999875422 222211111 22 23345556 9998887653
No 61
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=43.44 E-value=1.7e+02 Score=25.54 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhCCCeeEEEEEEecCchHHHH--HHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceE
Q 025166 122 RNLLQKYIRLCNDAKQVTVETMLVESKATAKAI--LDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 199 (257)
Q Consensus 122 ~~lL~~~~~~~~~~g~v~ve~~v~~G~~va~~I--l~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPV 199 (257)
.++++.+++.+.. . +++-.-+-. ...++| .+.|++.++|.|++-..-.......-+- .--..|...++ .||
T Consensus 68 ~~vi~~~~~~~~g-r-vpViaGvg~--st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~--lPi 140 (314)
T 3d0c_A 68 KQVATRVTELVNG-R-ATVVAGIGY--SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAV-EYYRNIIEALD--APS 140 (314)
T ss_dssp HHHHHHHHHHHTT-S-SEEEEEECS--SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHH-HHHHHHHHHSS--SCE
T ss_pred HHHHHHHHHHhCC-C-CeEEecCCc--CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC--CCE
Confidence 3445555554442 3 554443333 324443 5778899999999987654332211111 23346778888 999
Q ss_pred EEEc
Q 025166 200 TIVH 203 (257)
Q Consensus 200 LVVr 203 (257)
++-.
T Consensus 141 ilYn 144 (314)
T 3d0c_A 141 IIYF 144 (314)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
No 62
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=42.17 E-value=85 Score=23.76 Aligned_cols=65 Identities=5% Similarity=-0.029 Sum_probs=39.1
Q ss_pred hhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 133 NDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 133 ~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
...| .++...= ...| .+.|++.+.+.++|+|.+.+.-..... .+- .+.+.+-+...++++|++=-
T Consensus 28 ~~~G-~~Vi~lG-~~~p-~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~-~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 28 TNAG-FNVVNIG-VLSP-QELFIKAAIETKADAILVSSLYGQGEI--DCK-GLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHTT-CEEEEEE-EEEC-HHHHHHHHHHHTCSEEEEEECSSTHHH--HHT-THHHHHHHTTCTTCEEEEEE
T ss_pred HHCC-CEEEECC-CCCC-HHHHHHHHHhcCCCEEEEEecCcCcHH--HHH-HHHHHHHhcCCCCCEEEEEC
Confidence 3456 6543222 2345 799999999999999999876533322 222 55555544332237776543
No 63
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=41.91 E-value=23 Score=30.67 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCC
Q 025166 151 AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206 (257)
Q Consensus 151 a~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~ 206 (257)
.+.+++.+++++.|++|+.+.... .-|.+-+..++..+. .|++||.++.
T Consensus 53 ~~~~~~~~~~~~pDfvI~isPN~a-----~PGP~~ARE~l~~~~--iP~IvI~D~p 101 (283)
T 1qv9_A 53 VEMALDIAEDFEPDFIVYGGPNPA-----APGPSKAREMLADSE--YPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCTT-----SHHHHHHHHHHHTSS--SCEEEEEEGG
T ss_pred HHHhhhhhhhcCCCEEEEECCCCC-----CCCchHHHHHHHhCC--CCEEEEcCCc
Confidence 344567779999999999986643 346577888888888 9999997654
No 64
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=41.57 E-value=52 Score=30.38 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCc-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEE
Q 025166 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTP-VGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVET 142 (257)
Q Consensus 64 ~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~ 142 (257)
-.||..|++ .+.+|+.|+|+++....... .+ .... . -..+-|..+.+.+.+.| ++ .
T Consensus 16 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~--------~~r~-~-------Fl~~sL~~L~~~L~~~G-~~--L 72 (440)
T 2e0i_A 16 NTGLNYALS----ECDRVIPVFIADPRQLINNPYKS--------EFAV-S-------FMINSLLELDDELRKKG-SR--L 72 (440)
T ss_dssp CHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCC--------HHHH-H-------HHHHHHHHHHHHHHTTT-CC--C
T ss_pred hHHHHHHHh----cCCCEEEEEEeChhhhccCCcCC--------HHHH-H-------HHHHHHHHHHHHHHHcC-Ce--E
Confidence 346776765 35689999999864211100 11 0000 1 12233555555555556 54 3
Q ss_pred EEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCCCc
Q 025166 143 MLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 207 (257)
Q Consensus 143 ~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~~ 207 (257)
.+..|++ .+.|.++++ +++.|+.-.. .....+..-. .+. ..++... |+|..+.....
T Consensus 73 ~v~~g~~-~~~l~~l~~--~~~~v~~~~~-~~~~~~~rd~-~v~-~~l~~~g--i~~~~~~~~~l 129 (440)
T 2e0i_A 73 NVFFGEA-EKVVSRFFN--KVDAIYVNED-YTPFSISRDE-KIR-KVCEENG--IEFKAYEDYLL 129 (440)
T ss_dssp EEEESCH-HHHHHHHCT--TCSEEEEECC-CSHHHHHHHH-HHH-HHHHTTT--CEEEEECCSCS
T ss_pred EEEECCH-HHHHHHHHc--CCCEEEEecc-cChHHHHHHH-HHH-HHHHHcC--ceEEEecCCEE
Confidence 4567988 799999998 8999887432 2222211111 232 3344456 99988876543
No 65
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=40.56 E-value=13 Score=29.34 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhCCCcEEEEccC----CCCCcccccccCCHHHHHHhhCCCCceEEEEcCCCcc
Q 025166 150 TAKAILDLISVANVTSLVMGTK----LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKV 208 (257)
Q Consensus 150 va~~Il~~A~e~~aDLIVmGsr----G~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~~~ 208 (257)
..+.|.+++++++++.||||-- |.....-...- .++..+....+ +||..|......
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar-~f~~~L~~~~~--lpV~~vDEr~Ts 102 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQ-TFAKVLETTYN--VPVVLWDERLTT 102 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHH-HHHHHHHHHHC--SCEEEECCSSCH
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHH-HHHHHHHHhhC--CCEEEecCCCCH
Confidence 3799999999999999999943 11111100001 34445555567 999998765433
No 66
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=40.50 E-value=18 Score=28.25 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCcEEEEccC----CCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 151 AKAILDLISVANVTSLVMGTK----LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 151 a~~Il~~A~e~~aDLIVmGsr----G~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.|.+++++++++.||||-- |..+-.....- ..+..+-+..+ +||..+-..
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~-~f~~~L~~~~~--lpV~~~DER 97 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR-KFANRIHGRFG--VEVKLHDER 97 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHH-HHHHHHHHHHC--CCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHH-HHHHHHHHHhC--CCEEEEcCC
Confidence 689999999999999999932 21111100111 44556655567 999999654
No 67
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=36.50 E-value=1.7e+02 Score=26.75 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.1
Q ss_pred HHHHHHHHhhCCCcEEEEccCCC
Q 025166 151 AKAILDLISVANVTSLVMGTKLS 173 (257)
Q Consensus 151 a~~Il~~A~e~~aDLIVmGsrG~ 173 (257)
...+.++|++.++|.|+.|.++.
T Consensus 100 ~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 100 ARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCCEEEECCcCc
Confidence 46788899999999999999984
No 68
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=32.85 E-value=2.5e+02 Score=24.60 Aligned_cols=123 Identities=7% Similarity=0.030 Sum_probs=69.4
Q ss_pred CeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 025166 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIR 130 (257)
Q Consensus 53 ~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~ 130 (257)
-+|||+++... ...+++|..+. .+.+-++++++.+.... . . + .++ ++.+.+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~--~-------------~---l----~~q----l~~l~~ 73 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTDK--E-------------N---L----LSQ----LPSISE 73 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---CT--T-------------C---H----HHH----HHHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCCc--c-------------H---H----HHH----HHHHHH
Confidence 47999995444 88899887665 47788999998754320 0 0 0 001 233344
Q ss_pred HhhhCCCeeEEEEEEecCchHHHHHHHHhhCC-----CcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 131 LCNDAKQVTVETMLVESKATAKAILDLISVAN-----VTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 131 ~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~-----aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+++ +.+-..++....+...+...++.++ ...|+||-.....-...+ . .+... ++... .-|++.+.+
T Consensus 74 ~l~~r~-v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y-~-~~i~~-~~~~~--~nVlil~~~ 147 (294)
T 3g40_A 74 GFQEEG-VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEI-R-EIIRK-ASMYR--MGVLLFSKH 147 (294)
T ss_dssp HHHHTT-CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHH-H-HHHHH-HHHTT--CEEEEEECC
T ss_pred HHHhCC-ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHH-H-HHHHH-HHHhC--ceEEEEecC
Confidence 556667 8777766665444677777766654 578888876443211111 1 22222 34557 889999865
Q ss_pred Ccc
Q 025166 206 KKV 208 (257)
Q Consensus 206 ~~~ 208 (257)
...
T Consensus 148 ~~~ 150 (294)
T 3g40_A 148 PQA 150 (294)
T ss_dssp TTT
T ss_pred Ccc
Confidence 443
No 69
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=32.14 E-value=2.8e+02 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
.++++|++-|.. .-++.++.+ .|.+++.+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 468999998887 444443332 478999999864
No 70
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=31.88 E-value=77 Score=24.81 Aligned_cols=52 Identities=8% Similarity=-0.031 Sum_probs=32.3
Q ss_pred CchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166 148 KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 203 (257)
Q Consensus 148 ~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr 203 (257)
.| .+.|++.+.+.++|+|.+.+.-..... .+. .+.+.+-+...++++|+|=-
T Consensus 56 ~p-~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~-~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 56 QT-PEQVAMAAVQEDVDVIGVSILNGAHLH--LMK-RLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp CC-HHHHHHHHHHTTCSEEEEEESSSCHHH--HHH-HHHHHHHHTTCTTSCEEEEE
T ss_pred CC-HHHHHHHHHhcCCCEEEEEeechhhHH--HHH-HHHHHHHhcCCCCCEEEEeC
Confidence 45 799999999999999999876443222 122 44444434322237776653
No 71
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.36 E-value=92 Score=25.21 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=17.5
Q ss_pred CCHHHHHHhhCCCCceEEEEcCC
Q 025166 183 LSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 183 gSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
|+++.++-++.+ .||+-++..
T Consensus 59 Ggta~~lr~~~~--iPVV~I~~s 79 (196)
T 2q5c_A 59 GATSDYIKKSVS--IPSISIKVT 79 (196)
T ss_dssp HHHHHHHHTTCS--SCEEEECCC
T ss_pred ChHHHHHHHhCC--CCEEEEcCC
Confidence 388888888888 999999764
No 72
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=30.81 E-value=2.4e+02 Score=23.64 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCCeEEEeecCChHHHHHHHHHHhcCCCCeEEEEEEe
Q 025166 51 AASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVF 87 (257)
Q Consensus 51 ~~~kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlHV~ 87 (257)
-.+..++++.|.+..+++..++.-..++++|+|+...
T Consensus 7 ~~~~~~~tlGFd~~~~vral~~~g~~~~d~ViLv~~~ 43 (244)
T 2wte_A 7 HMKSYFVTMGFNETFLLRLLNETSAQKEDSLVIVVPS 43 (244)
T ss_dssp -CCEEEECCCSCCHHHHHHHHHTTCCTTSEEEEEEES
T ss_pred hhhhheeccCcChHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 4578899999999777777766656678899997753
No 73
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=29.97 E-value=2.5e+02 Score=24.39 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhCCCeeEEEEEEecCchHHHH--HHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceE
Q 025166 122 RNLLQKYIRLCNDAKQVTVETMLVESKATAKAI--LDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 199 (257)
Q Consensus 122 ~~lL~~~~~~~~~~g~v~ve~~v~~G~~va~~I--l~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPV 199 (257)
.++++.+.+.+.. . +.+-.-+ |....++| .+.|++.++|.|++-..-.......-+- .--..|...++ .||
T Consensus 68 ~~v~~~~v~~~~g-r-vpViaGv--g~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~--lPi 140 (316)
T 3e96_A 68 KEEVRRTVEYVHG-R-ALVVAGI--GYATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVY-AYFRDIIEALD--FPS 140 (316)
T ss_dssp HHHHHHHHHHHTT-S-SEEEEEE--CSSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHH-HHHHHHHHHHT--SCE
T ss_pred HHHHHHHHHHhCC-C-CcEEEEe--CcCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhCC--CCE
Confidence 3455555555442 3 5544433 44534443 4678889999999876543322111111 23346677778 999
Q ss_pred EEEcC
Q 025166 200 TIVHD 204 (257)
Q Consensus 200 LVVr~ 204 (257)
++-..
T Consensus 141 ilYn~ 145 (316)
T 3e96_A 141 LVYFK 145 (316)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 74
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=28.48 E-value=1.6e+02 Score=24.77 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=38.3
Q ss_pred hhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 133 NDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 133 ~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
...| .++...= ...| .+.|++.+++.++|+|.+.+.-..... .+. .+.+.+-+..+ .|||+|--.
T Consensus 148 ~~~G-~~Vi~LG-~~vp-~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~-~~i~~l~~~~~-~~~v~vGG~ 212 (258)
T 2i2x_B 148 RANG-YNVVDLG-RDVP-AEEVLAAVQKEKPIMLTGTALMTTTMY--AFK-EVNDMLLENGI-KIPFACGGG 212 (258)
T ss_dssp HHTT-CEEEEEE-EECC-SHHHHHHHHHHCCSEEEEECCCTTTTT--HHH-HHHHHHHTTTC-CCCEEEEST
T ss_pred HHCC-CEEEECC-CCCC-HHHHHHHHHHcCCCEEEEEeeccCCHH--HHH-HHHHHHHhcCC-CCcEEEECc
Confidence 3456 6553322 2356 699999999999999999875433322 111 33334333322 378777543
No 75
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=28.35 E-value=2.3e+02 Score=22.64 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=23.2
Q ss_pred CeEEEeecCCh-HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 53 ~kILVaVDgS~-~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
.+|+|++-|.. -.+|-+.+..+. .++.++|+-.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~---~~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR---PDIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS---TTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC---CCCeEEEeeC
Confidence 58999999988 555555554442 4688888864
No 76
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=27.85 E-value=3.7e+02 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.192 Sum_probs=23.6
Q ss_pred CeEEEeecCCh-HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 53 ~kILVaVDgS~-~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
++|+|++-|.. -.++-+.+..+ +.+++++|+-.
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~---g~~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA---GVDHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH---TCEEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc---CCeEEEEEEeC
Confidence 79999999988 43433333334 78999999854
No 77
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=27.20 E-value=2.9e+02 Score=23.51 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEE
Q 025166 125 LQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 202 (257)
Q Consensus 125 L~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVV 202 (257)
+.++.+.+...| +.+ +++-.. .+++. .|.+.++|+|.++.+....+. .+-....+++...+..+||+..
T Consensus 151 l~~l~~~a~~lG-l~~---lvev~t-~ee~~-~A~~~Gad~IGv~~r~l~~~~---~dl~~~~~l~~~v~~~~pvVae 219 (272)
T 3qja_A 151 LVSMLDRTESLG-MTA---LVEVHT-EQEAD-RALKAGAKVIGVNARDLMTLD---VDRDCFARIAPGLPSSVIRIAE 219 (272)
T ss_dssp HHHHHHHHHHTT-CEE---EEEESS-HHHHH-HHHHHTCSEEEEESBCTTTCC---BCTTHHHHHGGGSCTTSEEEEE
T ss_pred HHHHHHHHHHCC-CcE---EEEcCC-HHHHH-HHHHCCCCEEEECCCcccccc---cCHHHHHHHHHhCcccCEEEEE
Confidence 444445555556 653 233344 35544 444679999999876544433 1226777888887544777664
No 78
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=26.94 E-value=3.5e+02 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCCcEEEEccCCC
Q 025166 151 AKAILDLISVANVTSLVMGTKLS 173 (257)
Q Consensus 151 a~~Il~~A~e~~aDLIVmGsrG~ 173 (257)
...+.++|++.++|.|+.|.++.
T Consensus 96 ~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 96 AKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 35788899999999999999885
No 79
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=26.30 E-value=50 Score=28.92 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=34.3
Q ss_pred chhhhhhcccccccccccccCCCCCeEEEeecCChHHHHHHHHHHhcCCCCeEEEEE
Q 025166 29 SPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlH 85 (257)
..|+....++|+++-=+. .+..-++||+++|-.+ ..+. .|...++.+++-|
T Consensus 16 ~~e~aplae~~dd~Gllv-~~~eV~kIlvaLD~t~-~vv~----eA~~~g~dlIItH 66 (278)
T 3rxy_A 16 ALEMAEMRTLPADSAVYV-ESTDLKRVMMGIDIGP-AELL----LARQLGCDGVIAH 66 (278)
T ss_dssp HHHHTTCSSCCTTCEEEE-CCSCBSEEEEESSCCH-HHHH----HHHHTTCSEEEES
T ss_pred HHHhcCcccCCCCceeee-ccccccEEEEEECCCH-HHHH----HHHHcCCCEEEEC
Confidence 344444778888665355 5556799999999998 2333 3444568888776
No 80
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=26.27 E-value=69 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=28.5
Q ss_pred cccccccccccCCCCCeEEEeecCChHHHHHHHHHHhcCCCCeEEEEE
Q 025166 38 DHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 38 ~~~~~~~~~~~~~~~~kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlH 85 (257)
+|+++-=+.+.+..-++|++++|.++ ..++.|++ .++.+++.|
T Consensus 21 ~~d~~GL~v~~~~~V~~I~~~lD~t~-~vi~eAi~----~~adlIitH 63 (247)
T 1nmo_A 21 DYAPNGLQVEGKETVQKIVTGVTASQ-ALLDEAVR----LGADAVIVH 63 (247)
T ss_dssp CSSCCEEEECCCSBCCEEEEEEECCH-HHHHHHHH----TTCSEEEEE
T ss_pred CcCCCeeEECCCCccCEEEEEEcCCH-HHHHHHHh----CCCCEEEEC
Confidence 66633213333455799999999998 33555543 578888888
No 81
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=26.09 E-value=1.4e+02 Score=22.96 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=34.2
Q ss_pred hCCCeeEEEEEEecC-chHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 134 DAKQVTVETMLVESK-ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 134 ~~g~v~ve~~v~~G~-~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
..| ++++..-+... . ...|+.... ++|.||+|+.-..+-- -.- ..-..+........+|.++-..
T Consensus 31 ~~g-~~v~~~~~~~~~~-~~~~~~~~~--~~d~ii~Gspty~g~~--p~~-~~l~~l~~~~~~~k~va~fgs~ 96 (159)
T 3fni_A 31 KTG-VGVDVVDLGAAVD-LQELRELVG--RCTGLVIGMSPAASAA--SIQ-GALSTILGSVNEKQAVGIFETG 96 (159)
T ss_dssp HTT-CEEEEEESSSCCC-HHHHHHHHH--TEEEEEEECCBTTSHH--HHH-HHHHHHHHHCCTTSEEEEECCS
T ss_pred HCC-CeEEEEECcCcCC-HHHHHHHHH--hCCEEEEEcCcCCCCc--cHH-HHHHHHHhhcccCCEEEEEEcC
Confidence 346 76655444444 4 455554443 5799999998765321 011 2222333332233788887653
No 82
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=25.89 E-value=52 Score=20.71 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=21.4
Q ss_pred eEEEEEEecCchHHHHHHHHhhCCCcEE
Q 025166 139 TVETMLVESKATAKAILDLISVANVTSL 166 (257)
Q Consensus 139 ~ve~~v~~G~~va~~Il~~A~e~~aDLI 166 (257)
++..+++...+..++|++||++.+.|-+
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 5666777666668999999999887743
No 83
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=25.40 E-value=2e+02 Score=23.82 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 152 KAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 152 ~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
..+++.+.+.++|.|.++.. .+-.....+.+..+ +||+....
T Consensus 169 ~~~a~~a~~~Gad~i~~~~~---------~~~~~l~~i~~~~~--ipvva~GG 210 (273)
T 2qjg_A 169 AHAARLGAELGADIVKTSYT---------GDIDSFRDVVKGCP--APVVVAGG 210 (273)
T ss_dssp HHHHHHHHHTTCSEEEECCC---------SSHHHHHHHHHHCS--SCEEEECC
T ss_pred HHHHHHHHHcCCCEEEECCC---------CCHHHHHHHHHhCC--CCEEEEeC
Confidence 33457788899999998831 11134456777788 99988754
No 84
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=25.32 E-value=1.2e+02 Score=26.79 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHhhhCCCeeEEEEEEecCch---HHHHHHHHhhCCCcEEE-EccCCCCCcccccccCCHHHHHHhhCCCCceEEE
Q 025166 126 QKYIRLCNDAKQVTVETMLVESKAT---AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 201 (257)
Q Consensus 126 ~~~~~~~~~~g~v~ve~~v~~G~~v---a~~Il~~A~e~~aDLIV-mGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLV 201 (257)
++..+.+...+ +++...+..|++. .+.+++.+.+.++|+|| +|. |. .+ .++..+.-... +|++.
T Consensus 48 ~~v~~~L~~~g-~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG---Gs-----v~-D~aK~iA~~~~--~p~i~ 115 (370)
T 1jq5_A 48 HTIVNELKKGN-IAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG---GK-----TL-DTAKAVADELD--AYIVI 115 (370)
T ss_dssp HHHHHHHHTTT-CEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES---HH-----HH-HHHHHHHHHHT--CEEEE
T ss_pred HHHHHHHHHcC-CeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC---hH-----HH-HHHHHHHHhcC--CCEEE
Confidence 33444444556 7765455667653 34566677888999888 443 10 01 33334444446 99999
Q ss_pred EcCC
Q 025166 202 VHDG 205 (257)
Q Consensus 202 Vr~~ 205 (257)
||..
T Consensus 116 IPTT 119 (370)
T 1jq5_A 116 VPTA 119 (370)
T ss_dssp EESS
T ss_pred eccc
Confidence 9874
No 85
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=25.11 E-value=68 Score=25.92 Aligned_cols=33 Identities=0% Similarity=0.095 Sum_probs=25.5
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEE
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlH 85 (257)
.++|+|+|-||- .+++++.-. +++.+.+++++-
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~-L~~~g~~V~vv~ 36 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVE-LKQHFDEVNILF 36 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHH-HTTTSSCEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHH-HHHCCCEEEEEE
Confidence 589999999999 778877644 455688887765
No 86
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.97 E-value=77 Score=25.51 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEE
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlH 85 (257)
.++|++++-||- .+++++. +.+++.|.+++++-
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll-~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYI-IELKSKFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHH-HHHTTTCSEEEEEE
T ss_pred CCEEEEEEeCHHHHHHHHHHH-HHHHHCCCEEEEEE
Confidence 489999999999 7777765 45555788877664
No 87
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.47 E-value=2.2e+02 Score=23.44 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=29.9
Q ss_pred hhhCCCeeEEEEEEecCch-HHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcC
Q 025166 132 CNDAKQVTVETMLVESKAT-AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 204 (257)
Q Consensus 132 ~~~~g~v~ve~~v~~G~~v-a~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~ 204 (257)
+.+.| +.+......+++- ...+++.....++|-||+.......+. ... .-+..+. +||+++-.
T Consensus 28 a~~~g-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~------~~~-~~~~~~~--iPvV~~~~ 91 (313)
T 3m9w_A 28 AESLG-AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLS------NVV-KEAKQEG--IKVLAYDR 91 (313)
T ss_dssp HHHTS-CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH------HHH-HHHHTTT--CEEEEESS
T ss_pred HHHcC-CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH------HHH-HHHHHCC--CeEEEECC
Confidence 33445 6554443333331 123455555567887777554332211 111 2234456 78877754
No 88
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=24.47 E-value=1.5e+02 Score=22.66 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=32.7
Q ss_pred hCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 134 DAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 134 ~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
..| ++++..-+...+ ...+..... ++|.||+|+.-.++. +..-..-+.+....-...+|.++-..
T Consensus 27 ~~g-~~v~~~~~~~~~-~~~~~~~~~--~~d~ii~Gspty~g~---~p~~~fl~~l~~~~l~gk~v~~fgs~ 91 (161)
T 3hly_A 27 KTG-VAVEMVDLRAVD-PQELIEAVS--SARGIVLGTPPSQPS---EAVATALSTIFAAAHNKQAIGLFDSY 91 (161)
T ss_dssp HTT-CCEEEEETTTCC-HHHHHHHHH--HCSEEEEECCBSSCC---HHHHHHHHHHHHHCCTTSEEEEECCC
T ss_pred hCC-CeEEEEECCCCC-HHHHHHHHH--hCCEEEEEcCCcCCc---hhHHHHHHHHHhhhhCCCEEEEEEcC
Confidence 346 666544444444 355554433 479999999866431 10001222332221123788887653
No 89
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=23.98 E-value=3.6e+02 Score=23.46 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=66.2
Q ss_pred hhhhhcccccccccccccCCCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHH
Q 025166 31 EIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~ 108 (257)
++.++++.++-.+... ..+..+||+|=+-++. ..+|-++.+.- ..+++|.+| +.....
T Consensus 85 ~l~~la~~l~m~~~l~-~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~V--isn~~~---------------- 144 (302)
T 3o1l_A 85 AFTPIAEEFSMDWRIT-DSAQKKRVVLMASRESHCLADLLHRWHSD-ELDCDIACV--ISNHQD---------------- 144 (302)
T ss_dssp HHHHHHHHHTCEEEEE-ETTSCCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEE--EESSST----------------
T ss_pred HHHHHHHHhCCeeeec-ccCCCcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEE--EECcHH----------------
Confidence 3444555544223122 2234578888887777 77777765432 234555544 332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCeeEEEEEEec-Cc--hHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCH
Q 025166 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVES-KA--TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSK 185 (257)
Q Consensus 109 ~~~~~~~~~~~~~~~lL~~~~~~~~~~g~v~ve~~v~~G-~~--va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSV 185 (257)
++ ..+.+.| +++...-... +. .-.++++..++.++|+||+-.-++= +.
T Consensus 145 ------------~~-------~~A~~~g-Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~I------L~--- 195 (302)
T 3o1l_A 145 ------------LR-------SMVEWHD-IPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQI------LP--- 195 (302)
T ss_dssp ------------TH-------HHHHTTT-CCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCSC------CC---
T ss_pred ------------HH-------HHHHHcC-CCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhh------cC---
Confidence 00 1123446 7654431111 11 1256899999999999999865431 11
Q ss_pred HHHHHhhCCCCceEEEEcCCCcccc
Q 025166 186 GEFVKKNAPDYCEVTIVHDGKKVVD 210 (257)
Q Consensus 186 s~~Vv~~A~~~cPVLVVr~~~~~~~ 210 (257)
..++...+ -.++=+.+.-....
T Consensus 196 -~~~l~~~~--~~~INiHpSlLP~f 217 (302)
T 3o1l_A 196 -PQLCREYA--HQVINIHHSFLPSF 217 (302)
T ss_dssp -TTHHHHTT--TCEEEEESSCTTSS
T ss_pred -HHHHhhhh--CCeEEeCcccccCC
Confidence 23445555 55666665544444
No 90
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.81 E-value=2.5e+02 Score=22.76 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=36.6
Q ss_pred HHHHHhhhCCCeeEEEEEEecCch-HHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166 127 KYIRLCNDAKQVTVETMLVESKAT-AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205 (257)
Q Consensus 127 ~~~~~~~~~g~v~ve~~v~~G~~v-a~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~ 205 (257)
.+.+.+.+.| +.+......+++- ....++.....++|-||+......... .. -.-+..+. +||+++-..
T Consensus 29 gi~~~a~~~g-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~------~~-~~~~~~~~--iPvV~~~~~ 98 (293)
T 3l6u_A 29 AFKAEAKANK-YEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG------SA-IEEAKKAG--IPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH------HH-HHHHHHTT--CCEEEESSC
T ss_pred HHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH------HH-HHHHHHcC--CCEEEecCC
Confidence 3334445557 7665544444431 124555555678998888654322211 11 12345567 999998543
No 91
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=23.80 E-value=1.1e+02 Score=27.84 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCeEEEeecCCh-HHHHHHHH-HHhcC-CCCeEEEEEEec
Q 025166 52 ASDVYVAVGKDD-LHVLKWAL-DHAVS-PGARIYLVHVFS 88 (257)
Q Consensus 52 ~~kILVaVDgS~-~~AL~~Al-~~a~~-~~a~l~LlHV~~ 88 (257)
.++|+||+-|.. --+|-+.+ +.... .+-+++++||-.
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 478999999988 44444444 44433 578999999964
No 92
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=23.08 E-value=95 Score=26.11 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=27.6
Q ss_pred cccccccccccCCCCCeEEEeecCChHHHHHHHHHHhcCCCCeEEEEE
Q 025166 38 DHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 38 ~~~~~~~~~~~~~~~~kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlH 85 (257)
+|++.-=+..-+..-++|++++|.++ ..++.|++ .++.+++.|
T Consensus 22 ~~d~~GL~veG~~~V~~I~~alD~t~-~vi~eAi~----~~adlIitH 64 (242)
T 2yyb_A 22 DPSLNGLQVEGKRTVRKVGAAVDAGE-AIFRKALE----EEVDFLIVH 64 (242)
T ss_dssp CSSCCEEEECCCSBCCCEEEEEECSH-HHHHHHHH----TTCSEEEEE
T ss_pred CCCCCeEEEcCCcccCEEEEEEcCCH-HHHHHHHH----CCCCEEEEC
Confidence 56633213311145789999999998 44455543 578888888
No 93
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=22.49 E-value=3e+02 Score=22.10 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=22.2
Q ss_pred CeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 53 ~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
++++|++-|.. .-++.++.+. +.+++.+|+..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~ 36 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDY 36 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEEC
Confidence 68999999888 4445555442 36888888753
No 94
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.13 E-value=1.6e+02 Score=23.62 Aligned_cols=45 Identities=11% Similarity=-0.060 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhCCCeeEEEEEEe-cCchHHHHHHHHhhCCCcEEEEccCC
Q 025166 124 LLQKYIRLCNDAKQVTVETMLVE-SKATAKAILDLISVANVTSLVMGTKL 172 (257)
Q Consensus 124 lL~~~~~~~~~~g~v~ve~~v~~-G~~va~~Il~~A~e~~aDLIVmGsrG 172 (257)
+++.+.+.+.+.+ .+++..-+. +.+ ...+.+... .+|.||+++--
T Consensus 35 l~~~~~~~~~~~g-~~v~~~dL~~~~d-~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 35 LTEVADGTLRDLG-HDVRIVRADSDYD-VKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHTT-CEEEEEESSSCCC-HHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHcC-CEEEEEeCCcccc-HHHHHHHHH--hCCEEEEECCc
Confidence 3444444444446 666665553 445 466666665 48999999854
No 95
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=22.13 E-value=3.7e+02 Score=23.01 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=68.3
Q ss_pred eEEEeecCChHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025166 54 DVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (257)
Q Consensus 54 kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~~~ 133 (257)
+|-++.-.++....+..+++|+..|-.|-.==-++... ..|+-.. .++++.+. ....-.+..+..+|.
T Consensus 32 NIACGfHAGDp~~M~~tv~lA~~~gV~IGAHPgypDl~----GFGRR~m-~~s~~el~-------~~v~YQiGAL~a~a~ 99 (255)
T 1v6t_A 32 NVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLM----GFGRRYM-KLTPEEAR-------NYILYQVGALYAFAK 99 (255)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTT----TTTCSCC-CCCHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhccccCCCHHHHHHHHHHHHHcCCeEecCCCCCccc----CCCCCCC-CCCHHHHH-------HHHHHHHHHHHHHHH
Confidence 45454444445666667777776776655321122211 1132111 12233222 223334556666777
Q ss_pred hCCCeeEEEEEEec---------CchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEE
Q 025166 134 DAKQVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 201 (257)
Q Consensus 134 ~~g~v~ve~~v~~G---------~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLV 201 (257)
..| .++..+--.| ...+++|++.+...+.+|+++|-.| |.-.+..+... +||+-
T Consensus 100 ~~G-~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g-----------s~~~~~A~~~G--l~~~~ 162 (255)
T 1v6t_A 100 AEG-LELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN-----------SRVADIAEEMG--LKVAH 162 (255)
T ss_dssp HTT-CCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT-----------CHHHHHHHHHT--CCEEE
T ss_pred HcC-CEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC-----------hHHHHHHHHcC--CcEEE
Confidence 778 7776654444 2348899999999999999998533 44455566666 66653
No 96
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.72 E-value=1.8e+02 Score=22.64 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=24.4
Q ss_pred hhhCCCeeEEEEEEecCchHHHHHHHHhh----CCCcEEEE-ccCCCC
Q 025166 132 CNDAKQVTVETMLVESKATAKAILDLISV----ANVTSLVM-GTKLSP 174 (257)
Q Consensus 132 ~~~~g~v~ve~~v~~G~~va~~Il~~A~e----~~aDLIVm-GsrG~s 174 (257)
+.+.| +++....+..+. .+.|.+..++ .++|+||. |..|.+
T Consensus 30 l~~~G-~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 30 LAGGP-FEVAAYELVPDE-PPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HTTSS-EEEEEEEEECSC-HHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHCC-CeEeEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 34557 777766666666 4555554433 26898876 444443
No 97
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=21.65 E-value=4.7e+02 Score=23.96 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=24.5
Q ss_pred CCCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 49 DAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 49 ~~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
+++.++|+|++-|.- .-++.|+.+ .|.+++.+++.-
T Consensus 11 ~~~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~ 48 (421)
T 1vl2_A 11 HHMKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANV 48 (421)
T ss_dssp ---CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEES
T ss_pred ccccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEc
Confidence 567889999998888 455555533 378999988753
No 98
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.62 E-value=73 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEcc
Q 025166 126 QKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGT 170 (257)
Q Consensus 126 ~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGs 170 (257)
.++++.+.+.+ .++...+--|-. .+.+-+ +.+.+||.+|+|+
T Consensus 183 ~~lr~~~~~~~-~~~~I~VDGGI~-~~ti~~-~~~aGAD~~V~GS 224 (246)
T 3inp_A 183 KEISKWISSTD-RDILLEIDGGVN-PYNIAE-IAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHT-SCCEEEEESSCC-TTTHHH-HHTTTCCEEEESH
T ss_pred HHHHHHHHhcC-CCeeEEEECCcC-HHHHHH-HHHcCCCEEEEeh
Confidence 33444444334 444444433433 355444 4457999999996
No 99
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=21.54 E-value=1.3e+02 Score=24.71 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=23.9
Q ss_pred CeEEEeecCCh--HHHHHHHHHHhcCC-CCeEEEEE
Q 025166 53 SDVYVAVGKDD--LHVLKWALDHAVSP-GARIYLVH 85 (257)
Q Consensus 53 ~kILVaVDgS~--~~AL~~Al~~a~~~-~a~l~LlH 85 (257)
++|+++|-||- .++++..-.+ +.. |.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L-~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQAL-REMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHH-HTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHH-HhccCCEEEEEE
Confidence 48999999998 7788776554 444 78887764
No 100
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=21.39 E-value=2.7e+02 Score=23.75 Aligned_cols=45 Identities=4% Similarity=-0.062 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCC---CcccccccCCHHHHHHhhCCCCceEEEEcCCCccc
Q 025166 162 NVTSLVMGTKLSP---RSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVV 209 (257)
Q Consensus 162 ~aDLIVmGsrG~s---~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~~~~~ 209 (257)
++|++++|+.+-. ++... .|......+.++.. +||+|+-+.....
T Consensus 177 ~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~--vp~~V~a~~~K~~ 224 (276)
T 1vb5_A 177 EASIAIVGADMITKDGYVVNK-AGTYLLALACHENA--IPFYVAAETYKFH 224 (276)
T ss_dssp TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTT--CCEEEECCGGGBC
T ss_pred cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcC--CCEEEeccccccC
Confidence 6999999998743 33322 45333345556667 9999998754433
No 101
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=21.31 E-value=78 Score=27.81 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=32.7
Q ss_pred HHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEE-Ec
Q 025166 154 ILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI-VH 203 (257)
Q Consensus 154 Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLV-Vr 203 (257)
+++.+.+.+.|.|+|||.|-..+...+ . .+...|-++.+ .||++ .+
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~~-~-~~v~~ik~~~~--lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESHM-E-PYVAAVKAATP--LPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHHH-H-HHHHHHHHHCS--SCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHHH-H-HHHHHHHHhCC--CCEEEECC
Confidence 566677789999999966665333322 2 56666667688 99999 76
No 102
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=21.29 E-value=90 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCCeEEEeecCCh----HHHHHHHHH
Q 025166 51 AASDVYVAVGKDD----LHVLKWALD 72 (257)
Q Consensus 51 ~~~kILVaVDgS~----~~AL~~Al~ 72 (257)
+..-.||+.|.|+ ..||.||.+
T Consensus 29 P~~y~LV~L~~dePEvaa~AL~~A~e 54 (90)
T 2dbs_A 29 PPTYRLVLLPLDEPEVAAQALAWAME 54 (90)
T ss_dssp CSSCEEEEEETTCHHHHHHHHHHHHS
T ss_pred CCceEEEecCCCCHHHHHHHHHHHHh
Confidence 3445788888887 778888864
No 103
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.18 E-value=2.6e+02 Score=24.19 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=36.8
Q ss_pred HhhhCCCeeEEEEEEec-CchHHHHHHHHhhCCCcEEEE-ccCCCCCcccccccCCHHHHHHh---hCCCCceEEEEcCC
Q 025166 131 LCNDAKQVTVETMLVES-KATAKAILDLISVANVTSLVM-GTKLSPRSRLFTKKLSKGEFVKK---NAPDYCEVTIVHDG 205 (257)
Q Consensus 131 ~~~~~g~v~ve~~v~~G-~~va~~Il~~A~e~~aDLIVm-GsrG~s~l~r~~lGgSVs~~Vv~---~A~~~cPVLVVr~~ 205 (257)
.+.+.+ +++....... .. +..+.+.+...++|+||+ |--| . +. .++..+.+ ... +|+.++|-|
T Consensus 52 ~l~~~g-~~~~~~~t~~~~~-~~~~~~~~~~~~~d~vvv~GGDG--T-----l~-~v~~~l~~~~~~~~--~plgiiP~G 119 (332)
T 2bon_A 52 LLREEG-MTIHVRVTWEKGD-AARYVEEARKFGVATVIAGGGDG--T-----IN-EVSTALIQCEGDDI--PALGILPLG 119 (332)
T ss_dssp HHHTTT-CCEEEEECCSTTH-HHHHHHHHHHHTCSEEEEEESHH--H-----HH-HHHHHHHHCCSSCC--CEEEEEECS
T ss_pred HHHHcC-CcEEEEEecCcch-HHHHHHHHHhcCCCEEEEEccch--H-----HH-HHHHHHhhcccCCC--CeEEEecCc
Confidence 344456 6666554442 23 345554444457887665 4322 1 22 66666664 345 899999877
Q ss_pred Ccc
Q 025166 206 KKV 208 (257)
Q Consensus 206 ~~~ 208 (257)
..-
T Consensus 120 t~N 122 (332)
T 2bon_A 120 TAN 122 (332)
T ss_dssp SSC
T ss_pred CHH
Confidence 543
No 104
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=21.12 E-value=3e+02 Score=21.56 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=16.7
Q ss_pred HHHHHHhhCCCcEEEEccCCCC
Q 025166 153 AILDLISVANVTSLVMGTKLSP 174 (257)
Q Consensus 153 ~Il~~A~e~~aDLIVmGsrG~s 174 (257)
.+.++|++.+++.|+.|.+..-
T Consensus 104 ~~~~~a~~~g~~~i~tG~~~dd 125 (219)
T 3bl5_A 104 FASILAYQIGARHIITGVCETD 125 (219)
T ss_dssp HHHHHHHHHTCSEEECCCCC--
T ss_pred HHHHHHHHcCCCEEEEeccccc
Confidence 3367889999999999997643
No 105
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=21.11 E-value=1.3e+02 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=23.7
Q ss_pred CeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEE
Q 025166 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 53 ~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlH 85 (257)
++|+|++-||- .++++..-.+. ..+.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~-~~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLE-ELDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHH-HTTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 68999999997 77777765444 4587877663
No 106
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=21.11 E-value=73 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhhccccc-ccccccccCCCCCeEEEeecCChHHHHHHHHHHhcCCCCeEEEEE
Q 025166 33 VEIGEDHS-RSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~~~~~kILVaVDgS~~~AL~~Al~~a~~~~a~l~LlH 85 (257)
.+..++|+ .-+.--+.+..-++|++++|.++ -.++.|...++.+++.|
T Consensus 18 ~~~a~~~D~~GL~vG~~~~~V~~I~~alD~t~-----~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 18 QEFSMEGDSRGLQIGTLDKGIQRVMVALDIRE-----ETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp GGGSCTTCCCEEEESCSSSBCSEEEEESCCCH-----HHHHHHHHTTCSEEEES
T ss_pred HhHcCCCCCCeeEeCCCcCccCEEEEEEcCCH-----HHHHHHHHCCCCEEEEC
No 107
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.08 E-value=1.3e+02 Score=24.98 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=25.0
Q ss_pred CCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEE
Q 025166 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (257)
Q Consensus 52 ~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlH 85 (257)
.++|+|+|-||- .++++..-. +++.|.+++++-
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~-L~~~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDC-LVQEEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHH-HHHTTCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHH-HHHCCCEEEEEE
Confidence 389999999998 778877644 444688887764
No 108
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=20.63 E-value=3.7e+02 Score=22.36 Aligned_cols=37 Identities=8% Similarity=-0.171 Sum_probs=23.7
Q ss_pred CCeEEEeecCCh-HHHHHHHHHHhcCCCCeEEEEEEec
Q 025166 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFS 88 (257)
Q Consensus 52 ~~kILVaVDgS~-~~AL~~Al~~a~~~~a~l~LlHV~~ 88 (257)
+.+|+|++-|.. -.+|-+.+..+...+..+.++|+-.
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecC
Confidence 458999999988 4444444444432245788888753
No 109
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=20.56 E-value=4.5e+02 Score=23.33 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=23.6
Q ss_pred CCeEEEeecCCh-HHHHHHHHHHhcCCCCeEEEEEEecC
Q 025166 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (257)
Q Consensus 52 ~~kILVaVDgS~-~~AL~~Al~~a~~~~a~l~LlHV~~~ 89 (257)
.++|+|++-|.. -.++-+.+. ..+-+|+.||+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~---~~G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLK---EQGYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHH---HTTCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHH---HcCCcEEEEEEECC
Confidence 468999999888 333333332 24788999998643
No 110
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.04 E-value=1.6e+02 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCCeeEEEEEEecCchHHHHHHHHhh----CCCcEEEE-ccCCCC
Q 025166 135 AKQVTVETMLVESKATAKAILDLISV----ANVTSLVM-GTKLSP 174 (257)
Q Consensus 135 ~g~v~ve~~v~~G~~va~~Il~~A~e----~~aDLIVm-GsrG~s 174 (257)
.| +++....+.++. .+.|.+..++ .++|+||. |..|.+
T Consensus 43 ~G-~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 43 AG-HKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp HT-CEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred CC-CeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 36 777666666776 4666554433 27898876 444443
Done!