BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025168
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 190/231 (82%), Gaps = 1/231 (0%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 13 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN + WDD
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 353 bits (907), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 190/231 (82%), Gaps = 1/231 (0%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 13 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 72
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 73 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 132
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 133 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN + WDD
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 353 bits (906), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 190/231 (82%), Gaps = 1/231 (0%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 36 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 95
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+SL RA+ YM+ QCLGA+C
Sbjct: 96 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAIC 155
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 156 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN + WDD
Sbjct: 215 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 265
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 352 bits (902), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/231 (74%), Positives = 189/231 (81%), Gaps = 1/231 (0%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 32 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 91
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ YM+ QCLGA+C
Sbjct: 92 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAIC 151
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 152 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 210
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN + WDD
Sbjct: 211 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 261
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/231 (74%), Positives = 189/231 (81%), Gaps = 1/231 (0%)
Query: 26 QSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85
Q KDY +PPPAP F+ GELK WSF+RA IAEF+AT LFLYITV TV+G SK C +V
Sbjct: 36 QHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSV 95
Query: 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVC 145
G+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGL LARK+ L RA+ YM+ QCLGA+C
Sbjct: 96 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAIC 155
Query: 146 GAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205
G G+VK F Y + GGGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR+ARD
Sbjct: 156 GVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 206 SHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
SHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IFN + WDD
Sbjct: 215 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 265
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 13/217 (5%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVS---KSNTKCSTVGIQ-GIAWAFGGMIF 99
E K F+RA +AEF+A LF++I++ + +G KSN V ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
L ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+ ++ G S
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 160 ERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFA 219
L G N +A G G GLG EIIGT LV V + TD +R PL IGF+
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGFS 177
Query: 220 VFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
V L HL I TG GINPARS G+++I H + DH
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVI---THNFQDH 211
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 11/215 (5%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFAL 101
E K F+RA +AEF+AT LF++I++ + +G N + + ++ AFG I L
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATL 63
Query: 102 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYER 161
ISG H+NPAVT GLLL+ ++S+ RA+ Y++ QC+GA+ ++ G S
Sbjct: 64 AQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNS 123
Query: 162 LGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVF 221
L G N +A G G GLG EIIGT LV V + TD +R RD + APL IG +V
Sbjct: 124 L--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVA 177
Query: 222 LVHLATIPITGTGINPARSLGAAIIFNKDHAWDDH 256
L HL I TG GINPARS G+A+I H + +H
Sbjct: 178 LGHLLAIDYTGCGINPARSFGSAVI---THNFSNH 209
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 12/209 (5%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---SVVGGLGVT 126
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLAT 227
HG T G GL E+I TF LV+T+F++ D+KR V L IGF+V + HL
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFA 182
Query: 228 IPITGTGINPARSLGAAIIFNKDHAWDDH 256
I TG +NPARS G A+I W++H
Sbjct: 183 INYTGASMNPARSFGPAVIMGN---WENH 208
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---SVVGGLGVT 165
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLAT 227
HG T G GL E+I TF LV+T+F++ D KR V L IGF+V + HL
Sbjct: 166 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFA 221
Query: 228 IPITGTGINPARSLGAAIIFNKDHAWDDH 256
I TG +NPARS G A+I W++H
Sbjct: 222 INYTGASMNPARSFGPAVIMGN---WENH 247
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ ++V + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS---VVGGLGVT 126
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLAT 227
HG T G GL E+I TF LV+T+F++ D KR V L IGF+V + HL
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFA 182
Query: 228 IPITGTGINPARSLGAAIIFNKDHAWDDH 256
I TG +NPARS G A+I W++H
Sbjct: 183 INYTGASMNPARSFGPAVIMGN---WENH 208
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 119/209 (56%), Gaps = 12/209 (5%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
+F++A AEF+A +F+ +++ + + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTE-KPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SGGHINPAVT ++ RK+S+ ++VFY+ QCLGA+ GAG++ +GG
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVT 117
Query: 169 VAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLAT 227
+ HG T G GL E+I TF LV+T+F++ D+KR + L IGF+V + HL
Sbjct: 118 MVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFA 173
Query: 228 IPITGTGINPARSLGAAIIFNKDHAWDDH 256
I TG +NPARS G A+I W++H
Sbjct: 174 INYTGASMNPARSFGPAVIMGN---WENH 199
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
E+ S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
+SGGHINPA+T LL+ ++SL RA FY+ Q +GA+ GAG++ G + R
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGN 117
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFL 222
N + + T+G + E+I TF L +F++TD++R + P+ +P L IG +V L
Sbjct: 118 LAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTL 172
Query: 223 VHLATIPITGTGINPARSLGAAIIFNK 249
HL I TG +NPARS G A++ N+
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVMNR 199
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
EL+S SF+RA AEF A+ +++ +G S +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
ISG H+NPAVTF L+ ++SL RA+ YMV Q LGAV GA V+ + + R
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 223
N + G + G EI T V +F+ D +RN R V L +GF++ L
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 224 HLATIPITGTGINPARSLGAAII 246
HL + TG G+NPARS AI+
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL 194
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVY 103
EL+S SF+RA AEF AT +++ +G S +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 104 CTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLG 163
ISG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 164 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 223
N + G + G EI T V +F+ D +RN R V L +GF++ L
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 224 HLATIPITGTGINPARSLGAAII 246
HL + TG G+NPARS AI+
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL 194
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 103/201 (51%), Gaps = 11/201 (5%)
Query: 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCT 105
+S SF+RA AEF AT +++ +G S +Q +A AFG + LV
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAV 55
Query: 106 AGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGG 165
ISG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R
Sbjct: 56 GHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLA 113
Query: 166 ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 225
N + G + G EI T V +F+ D +RN R V L +GF++ L HL
Sbjct: 114 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHL 169
Query: 226 ATIPITGTGINPARSLGAAII 246
+ TG G+NPARS AI+
Sbjct: 170 FGMYYTGAGMNPARSFAPAIL 190
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 101/198 (51%), Gaps = 11/198 (5%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGI 108
SF+RA AEF AT +++ +G S +Q +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHI 56
Query: 109 SGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANV 168
SG H+NPAVTF L+ ++SL RA+ Y+V Q LGAV GA V+ + + R N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNT 114
Query: 169 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 228
+ G + G EI T V +F+ D +RN R V L +GF++ L HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 229 PITGTGINPARSLGAAII 246
TG G+NPARS AI+
Sbjct: 171 YYTGAGMNPARSFAPAIL 188
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A L+HL +IP+T T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAI 198
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 94 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 153
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+HL +IP+T T +NPARS AI
Sbjct: 154 DKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+HL +IP+T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAI 198
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+HL +IP+T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAI 198
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A A+G + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+HL +IP+T T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 198
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 45 LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCST-----VGIQGIAWAFGGMIF 99
+S+ R +AEF TF V G S + +G G+A AFG +
Sbjct: 24 FQSYVMGRKLLAEFFGTFWL-------VFGGCGSAVFAAAFPELGIGFTGVALAFGLTVL 76
Query: 100 ALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNY 159
+ Y GISGGH NPAV+ GL +A + + V Y++ Q GA+ A + K
Sbjct: 77 TMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAG 136
Query: 160 ERLGGGANV-----VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPL 214
LGG A+ GY+ L EII T + + +T + A AP+
Sbjct: 137 IDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPI 190
Query: 215 PIGFAVFLVHLATIPITGTGINPARSLGAAI 245
IG A+ L+HL +IP+T T +NPARS G A+
Sbjct: 191 AIGLALTLIHLISIPVTNTSVNPARSTGQAL 221
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 57 EFMATFLFLY----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGH 112
EF+ TFLFL+ I + + + + I++ FG + V+ T +SGG+
Sbjct: 51 EFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGN 110
Query: 113 INPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG 172
+NPAVT L+LAR + R + Q + + AG + AN + G
Sbjct: 111 LNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI-----AFANALGGG 165
Query: 173 YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITG 232
++ GL E GT +L TV K A AP IG A+ + HL I TG
Sbjct: 166 ASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTG 220
Query: 233 TGINPARSLGAAI 245
G+NPARS G A+
Sbjct: 221 AGLNPARSFGPAV 233
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A AFG + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+ L +IP+T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAI 198
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAV 144
+G G+A A+G + + + ISGGH NPAVT GL + V Y++ Q +G +
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 145 CGAGVV-------KGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197
A ++ GF+ + + G GY+ L E++ + + + AT
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT 156
Query: 198 DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
D A AP+ IG A+ L+ L +IP+T +NPARS AI
Sbjct: 157 DKFAPAG------FAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAI 198
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 55 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGIS 109
IAEF+ T L ++ + L V G S + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMA--------IYLTAGVS 63
Query: 110 GGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLG 163
G H+NPAVT L L + + ++V Q GA C A +V G F+ + + +
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 164 GGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP 213
G V T E++ T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 214 LPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
L IG + ++ + P+TGT +NPAR G +
Sbjct: 181 LLIGLLIAVIGASMGPLTGTAMNPARDFGPKV 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 49 SFYRAGIAEFMATFLFLY-------ITVLTVMGVSKSN-------TKCSTVGIQGIAWAF 94
S + IAEF+ TF+ ++ +T++ G + N I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 95 GGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFE 154
G I A +Y ISG HINPAVT GL +K V Y++ Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 155 GSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPL 214
G G GA G + + AE++GTF+L+ T+ +R + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 215 PIGFAVFLVHLATIPITGTGINPARSLGAAI---IFNKDHAWDDH 256
IG V + I+G+ +NPAR+ G + IF W+ +
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYY 222
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 55 IAEFMATFLFLY-----ITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGIS 109
IAEF+ T L ++ + L V G S + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 110 GGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG------FEGSKNYERLG 163
G H+NPAVT L L + + ++V Q GA C A +V G F+ + + +
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 164 GGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP 213
G V T E++ T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 214 LPIGFAVFLVHLATIPITGTGINPARSLGAAI 245
L IG + ++ + P+TG +NPAR G +
Sbjct: 181 LLIGLLIAVIGASMGPLTGFAMNPARDFGPKV 212
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 56 AEFMATFLFLY-------ITVLTVMGVSKSN--TKCSTVGIQGIAWAFGGMIFAL----- 101
AE + TF+ ++ IT++ G K N W GM FAL
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 102 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYER 161
+Y ISG HINPAVT L + V Y+V Q +GA G+ + G
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATV 130
Query: 162 LGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVF 221
G GA G G + E IGTF+L+ + +R P A L IG V
Sbjct: 131 GGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVG 185
Query: 222 LVHLATIPITGTGINPARSLG 242
+ ITG+ +NPAR+ G
Sbjct: 186 GIITTIGNITGSSLNPARTFG 206
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG----IAWAFGGMIFALVYC 104
S+ R I EF+ TF+ +++ + T G+ G + +G +F +
Sbjct: 8 SYVREFIGEFLGTFVLMFLG-------EGATANFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 105 TAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKG 152
+A +SG H+N AV+ GL K L + Y Q LGA G V G
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYG 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,002
Number of Sequences: 62578
Number of extensions: 330541
Number of successful extensions: 737
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 34
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)