Query 025168
Match_columns 257
No_of_seqs 154 out of 1602
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 1.1E-43 2.3E-48 304.2 17.8 200 44-257 4-204 (238)
2 KOG0224 Aquaporin (major intri 100.0 1.6E-44 3.6E-49 311.8 11.0 195 47-247 28-235 (316)
3 PLN00184 aquaporin NIP1; Provi 100.0 8.3E-43 1.8E-47 308.9 21.7 201 46-257 49-251 (296)
4 COG0580 GlpF Glycerol uptake f 100.0 1.6E-42 3.5E-47 296.2 17.2 194 49-247 3-202 (241)
5 PF00230 MIP: Major intrinsic 100.0 2.5E-42 5.4E-47 297.4 17.2 207 44-257 1-210 (227)
6 PTZ00016 aquaglyceroporin; Pro 100.0 3.5E-41 7.6E-46 299.2 20.8 192 48-247 47-251 (294)
7 PLN00167 aquaporin TIP5; Provi 100.0 8.5E-40 1.8E-44 285.1 21.2 203 43-257 14-218 (256)
8 PLN00166 aquaporin TIP2; Provi 100.0 8.5E-40 1.8E-44 284.3 20.4 203 44-257 11-215 (250)
9 PRK05420 aquaporin Z; Provisio 100.0 1.8E-39 4E-44 279.6 19.8 198 51-257 2-206 (231)
10 PLN00027 aquaporin TIP; Provis 100.0 2.4E-39 5.2E-44 282.3 19.8 201 45-257 14-217 (252)
11 PLN00182 putative aquaporin NI 100.0 7.1E-39 1.5E-43 282.2 21.2 195 47-257 38-232 (283)
12 PLN00026 aquaporin NIP; Provi 100.0 7.3E-39 1.6E-43 283.2 19.7 194 47-257 67-260 (298)
13 PLN00183 putative aquaporin NI 100.0 5E-37 1.1E-41 269.5 19.4 224 17-257 10-234 (274)
14 cd00333 MIP Major intrinsic pr 100.0 1E-36 2.3E-41 262.6 18.0 201 52-257 1-208 (228)
15 TIGR00861 MIP MIP family chann 100.0 1.1E-35 2.4E-40 254.3 17.7 197 56-257 1-199 (216)
16 PLN00182 putative aquaporin NI 99.7 6.4E-18 1.4E-22 149.3 9.8 131 13-155 121-254 (283)
17 PLN00026 aquaporin NIP; Provi 99.7 2.6E-17 5.5E-22 146.1 8.3 131 14-156 151-283 (298)
18 cd00333 MIP Major intrinsic pr 99.7 3.2E-17 7E-22 141.3 8.4 135 12-152 79-227 (228)
19 PLN00183 putative aquaporin NI 99.7 6.1E-17 1.3E-21 142.5 9.8 132 13-157 124-258 (274)
20 KOG0223 Aquaporin (major intri 99.7 4.4E-17 9.6E-22 140.1 5.4 141 7-157 84-228 (238)
21 TIGR00861 MIP MIP family chann 99.7 5.3E-16 1.2E-20 132.7 9.8 131 13-149 80-215 (216)
22 PLN00184 aquaporin NIP1; Provi 99.6 2.2E-15 4.8E-20 134.0 11.1 134 14-157 134-275 (296)
23 PLN00166 aquaporin TIP2; Provi 99.6 6.9E-15 1.5E-19 128.2 10.5 138 13-157 102-239 (250)
24 PLN00027 aquaporin TIP; Provis 99.6 1.8E-14 3.8E-19 125.9 10.4 135 13-156 104-240 (252)
25 PRK05420 aquaporin Z; Provisio 99.6 1.7E-14 3.8E-19 124.5 9.5 137 12-157 81-230 (231)
26 PLN00167 aquaporin TIP5; Provi 99.5 3.8E-14 8.3E-19 123.9 9.0 138 12-157 105-242 (256)
27 COG0580 GlpF Glycerol uptake f 99.5 9E-14 1.9E-18 119.5 10.0 135 13-155 87-240 (241)
28 PTZ00016 aquaglyceroporin; Pro 99.5 1.7E-13 3.7E-18 122.1 9.6 103 48-157 181-292 (294)
29 PF00230 MIP: Major intrinsic 99.5 2.5E-13 5.5E-18 116.9 8.8 131 13-150 93-227 (227)
30 KOG0224 Aquaporin (major intri 98.6 4.1E-08 8.8E-13 86.1 4.9 137 14-157 113-277 (316)
31 PF01226 Form_Nir_trans: Forma 64.7 88 0.0019 27.3 10.1 110 88-199 58-174 (250)
32 PRK10805 formate transporter; 62.6 1.1E+02 0.0025 27.2 12.8 103 91-197 72-183 (285)
33 COG2116 FocA Formate/nitrite f 42.5 2.4E+02 0.0053 24.9 14.0 109 88-198 65-181 (265)
34 PRK12446 undecaprenyldiphospho 40.2 8.3 0.00018 35.2 -0.4 22 104-125 6-27 (352)
35 PF03033 Glyco_transf_28: Glyc 39.9 9.3 0.0002 29.2 -0.1 20 107-126 6-25 (139)
36 TIGR00790 fnt formate/nitrite 34.9 3E+02 0.0064 23.7 11.2 82 114-195 68-157 (239)
37 COG0730 Predicted permeases [G 32.4 2.2E+02 0.0047 24.5 7.4 30 124-153 68-97 (258)
38 PF01925 TauE: Sulfite exporte 30.7 2.3E+02 0.0051 23.6 7.2 27 126-152 60-86 (240)
39 PF03842 Silic_transp: Silicon 23.9 3.7E+02 0.0079 25.6 7.3 112 92-205 139-254 (512)
40 PRK11562 nitrite transporter N 22.7 5.4E+02 0.012 22.7 10.2 105 91-197 62-172 (268)
41 PRK09979 putative rho operon l 20.7 30 0.00064 19.6 -0.2 17 229-245 5-21 (33)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=304.24 Aligned_cols=200 Identities=52% Similarity=0.772 Sum_probs=179.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHH
Q 025168 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLL 123 (257)
Q Consensus 44 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~ 123 (257)
+.++++.+|++++||++|++++|++|+++..... .....+.+.+++.+|+.+++.+++++++||||+|||||+++++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~ 80 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV 80 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence 4567889999999999999999999998876553 1234567889999999999999999999999999999999999
Q ss_pred ccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHH-hcccccc
Q 025168 124 ARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRN 202 (257)
Q Consensus 124 ~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~-~~~~~~~ 202 (257)
.|++++.+++.||++|++|+++|+++.+.+.+.+ +.....+...+.++.+..++++.|++.||+|+++++. ..|+|++
T Consensus 81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~ 159 (238)
T KOG0223|consen 81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ-YNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS 159 (238)
T ss_pred hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc-cccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence 9999999999999999999999999999999885 3334445566788899999999999999999999999 7777765
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
.+.|+.||+++...+++.+++||++|||||+|||+++.+ .|++||
T Consensus 160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hw 204 (238)
T KOG0223|consen 160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHW 204 (238)
T ss_pred -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEE
Confidence 388999999999999999999999999999999999997 699998
No 2
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=311.80 Aligned_cols=195 Identities=31% Similarity=0.429 Sum_probs=170.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC
Q 025168 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 47 ~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~ 126 (257)
...+.|++++||+||++|++++++++.+...++.. ...+..+.+++|+.+++.+++.+++||||+|||||+++++.||
T Consensus 28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~--~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~ 105 (316)
T KOG0224|consen 28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGT--GGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR 105 (316)
T ss_pred HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCC--CCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC
Confidence 34689999999999999999999998887776433 2345667889999999999999999999999999999999999
Q ss_pred CcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCC-----C--------cccccCCCCccchhHHHHHHHHHHHHHH
Q 025168 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG-----G--------ANVVAHGYTKGDGLGAEIIGTFVLVYTV 193 (257)
Q Consensus 127 ~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~s~~~~~~~E~~~T~~l~~~i 193 (257)
++|+|+++|+++|++||++|++.+|.+|.+.+.+..++ + ++.+.|+.+.+++|+.|+++|.+|+.++
T Consensus 106 ~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l 185 (316)
T KOG0224|consen 106 LPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCL 185 (316)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999998874333221 1 1234578899999999999999999999
Q ss_pred HHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh
Q 025168 194 FSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (257)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~ 247 (257)
++++|++|..+ +.+.|+.+|+++.++.++.+.++|..+|||||||||+|.
T Consensus 186 ~aI~D~rN~~p----~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~ 235 (316)
T KOG0224|consen 186 FAITDKRNPIP----TGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFT 235 (316)
T ss_pred eEEecCCCCCC----cchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHH
Confidence 99999988443 468999999999999999999999999999999999994
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=8.3e-43 Score=308.90 Aligned_cols=201 Identities=27% Similarity=0.399 Sum_probs=165.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHcc
Q 025168 46 KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125 (257)
Q Consensus 46 ~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g 125 (257)
.+.+++|++++||+|||+|+|++|+++....... ...+...+++++|+.+++.+++++++||+|+|||||+++++.+
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~---~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g 125 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQND---NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCG 125 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhC
Confidence 3557889999999999999999998765332211 1234667789999999999999999999999999999999999
Q ss_pred CCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCC--CcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccC
Q 025168 126 KLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG--GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (257)
Q Consensus 126 ~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 203 (257)
+++|.++++||++|++||++|+++++.+++......... ......|..+..++|+.|+++||+|+++++.+.++++..
T Consensus 126 ~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~ 205 (296)
T PLN00184 126 RFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAI 205 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCC
Confidence 999999999999999999999999999986542111111 111223445778999999999999999999876544321
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 204 ~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
..+.|+.||+++.+.+++.+++||++||||||||||++++ .|+++|
T Consensus 206 -----~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~W 251 (296)
T PLN00184 206 -----GELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIW 251 (296)
T ss_pred -----CcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccc
Confidence 2378999999999999999999999999999999999986 788888
No 4
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=296.23 Aligned_cols=194 Identities=36% Similarity=0.531 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCc
Q 025168 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (257)
Q Consensus 49 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~ 128 (257)
+..|++++||+||++|++++++++........+....++..+++++|+.+++.+|+++++||+|+|||||++.++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 35678899999999999999999887776655555667778899999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhc-----CCCcccccCC-CCccchhHHHHHHHHHHHHHHHHhcccccc
Q 025168 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERL-----GGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (257)
Q Consensus 129 ~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~-----~~~~~~~~~~-~s~~~~~~~E~~~T~~l~~~il~~~~~~~~ 202 (257)
|++++.||++|++||++|+.+++.+++++..+.. ..+..+..|+ .+..++|+.|+++||+|+++|+.+.|+++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999988743333 1334445554 467889999999999999999998875443
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~ 247 (257)
. ..+.|+.||+.+..+.++.++.||.++|||||||||+++
T Consensus 163 -~----~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~ 202 (241)
T COG0580 163 -N----AGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAH 202 (241)
T ss_pred -c----ccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHH
Confidence 1 238999999999999999999999999999999999965
No 5
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=2.5e-42 Score=297.36 Aligned_cols=207 Identities=37% Similarity=0.527 Sum_probs=174.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---CCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHH
Q 025168 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTK---CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120 (257)
Q Consensus 44 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla 120 (257)
|.++++++|++++||+||++++|+++++..+.....++ ....+...+++++|+.+++.+++++++||+|+||+||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 45778999999999999999999999866543333221 122356778889999999999999999999999999999
Q ss_pred HHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcccc
Q 025168 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 200 (257)
Q Consensus 121 ~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~ 200 (257)
.++.|++++.+.+.|+++|++|+++|+++++.++++. ..........+.++.+..++++.|+++|++|+++++...|++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~ 159 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS-NSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDK 159 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH-HTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCc-ccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999875 222233344567788899999999999999999999999888
Q ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 201 RNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 201 ~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
++.+. +.+.|+.||+++.+..+..++.||++||||||||||++.+ .|+++|
T Consensus 160 ~~~~~---~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~w 210 (227)
T PF00230_consen 160 RKFPL---GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFW 210 (227)
T ss_dssp SSSTS---SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTT
T ss_pred ccccc---ccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEE
Confidence 76542 2378999999999999999999999999999999999986 588888
No 6
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=3.5e-41 Score=299.17 Aligned_cols=192 Identities=28% Similarity=0.361 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCC
Q 025168 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL 127 (257)
Q Consensus 48 ~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~ 127 (257)
++++|++++||+|||+|+|++++++......+ ...+...+++++|+.+++.+++++++||+|+|||||+++++.+++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i 123 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKF 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccC
Confidence 67889999999999999999998765432221 123456778999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCC-------------CcccccCCCCccchhHHHHHHHHHHHHHHH
Q 025168 128 SLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG-------------GANVVAHGYTKGDGLGAEIIGTFVLVYTVF 194 (257)
Q Consensus 128 ~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~E~~~T~~l~~~il 194 (257)
+|.+++.||++|++|+++|++++|.++++. ++..+. +.....|+.+..++|+.|+++||+|+++++
T Consensus 124 ~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~il 202 (294)
T PTZ00016 124 PWKKLPGYFVAQLLGAFVGAACVYGLYYGF-FKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVIL 202 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764 222111 122334566778999999999999999999
Q ss_pred HhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh
Q 025168 195 SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (257)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~ 247 (257)
.+.|+++... +...|+.||+++.+++++.+++||++||||||||||+++
T Consensus 203 a~~d~~~~~~----~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~ 251 (294)
T PTZ00016 203 AITDPNNCPA----FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFS 251 (294)
T ss_pred HhccCccCCC----cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHH
Confidence 9998776432 236799999999999999999999999999999999997
No 7
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=8.5e-40 Score=285.05 Aligned_cols=203 Identities=30% Similarity=0.434 Sum_probs=166.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHH
Q 025168 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFG 120 (257)
Q Consensus 43 ~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla 120 (257)
++...+.++|++++||+|||+|+|+++++...... .++.....+.+.+++++|+.+++.+++++++||+|+|||+|++
T Consensus 14 ~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~ 93 (256)
T PLN00167 14 QQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFG 93 (256)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHH
Confidence 34456778999999999999999999998764321 1111122356778999999999999999999999999999999
Q ss_pred HHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcccc
Q 025168 121 LLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAK 200 (257)
Q Consensus 121 ~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~ 200 (257)
+++.|+++|.+++.||++|++|+++|+.+++.++++.... .....++.+..++++.|+++|++|+++++.+.|++
T Consensus 94 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~ 168 (256)
T PLN00167 94 MAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVP-----TYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPR 168 (256)
T ss_pred HHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcccccc-----ccccCcccchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999887653211 11122345667899999999999999999988876
Q ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 201 RNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 201 ~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+... +...|+.||+++..+.++.+++||++||||||||||++++ .|++||
T Consensus 169 ~~~~----~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~w 218 (256)
T PLN00167 169 RGLL----GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQA 218 (256)
T ss_pred ccCC----CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcE
Confidence 5321 3478999999999999999999999999999999999975 577766
No 8
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=8.5e-40 Score=284.33 Aligned_cols=203 Identities=31% Similarity=0.502 Sum_probs=166.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCC-cCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHH
Q 025168 44 ELKSWSFYRAGIAEFMATFLFLYITVLTVMGV-SKSNT-KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL 121 (257)
Q Consensus 44 ~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~ 121 (257)
+..+++.+|++++||++||+|+|+++++.... ...++ .....+.+.+++++|+.+++.+++++++||+|+|||+|+++
T Consensus 11 ~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~ 90 (250)
T PLN00166 11 DSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGL 90 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 33456788999999999999999999876542 11111 11123456678999999999999999999999999999999
Q ss_pred HHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccc
Q 025168 122 LLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 201 (257)
Q Consensus 122 ~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~ 201 (257)
++.++++|.+.++||++|++|+++|+.+++.+++++.. ......++.+..++++.|+++||+|+++++...++++
T Consensus 91 ~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~ 165 (250)
T PLN00166 91 AIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESV-----PTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPK 165 (250)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----cccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999988764311 1112345567789999999999999999998766544
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 202 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.. .+.+.|+.||+++.++++..+++||++||||||||||++++ +|+++|
T Consensus 166 ~~~---~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~w 215 (250)
T PLN00166 166 KGS---LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIW 215 (250)
T ss_pred ccc---cccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccc
Confidence 321 12478999999999999999999999999999999999985 699998
No 9
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.8e-39 Score=279.61 Aligned_cols=198 Identities=30% Similarity=0.508 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCccc
Q 025168 51 YRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLT 130 (257)
Q Consensus 51 ~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~ 130 (257)
+|++++||+||++|+|++++++....... ....+...+++++|+.+++.+++++++||+|+|||||+++++.|+++|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHH
Confidence 68999999999999999998754322111 1123456678999999999999999999999999999999999999999
Q ss_pred chhhHHhhhhhHHHHHHHHHHhhcCCcc-hhhcC-----CCcccccC-CCCccchhHHHHHHHHHHHHHHHHhccccccC
Q 025168 131 RAVFYMVMQCLGAVCGAGVVKGFEGSKN-YERLG-----GGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (257)
Q Consensus 131 ~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~-~~~~~-----~~~~~~~~-~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 203 (257)
+.+.||++|++|+++|+.+++.+++... ++..+ .+.....| ..+..++++.|+++|++|+++++...|+++.
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~- 158 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRAP- 158 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 9999999999999999999998876531 11111 01111112 3466899999999999999999999886542
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 204 RDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 204 ~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.+.|+.||+++.+..++.+++||++||||||||||++++ +..|++||
T Consensus 159 -----~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~w 206 (231)
T PRK05420 159 -----AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQLW 206 (231)
T ss_pred -----CcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccceE
Confidence 2378999999999999999999999999999999999985 22345777
No 10
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=2.4e-39 Score=282.27 Aligned_cols=201 Identities=33% Similarity=0.512 Sum_probs=165.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHH
Q 025168 45 LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSK-S-NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (257)
Q Consensus 45 ~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~ 122 (257)
...+..+|++++||++||+|+|++++++..... . +.+....+.+.+++++|+.+++.+++++++||+|+|||+|++++
T Consensus 14 ~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~ 93 (252)
T PLN00027 14 ASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAF 93 (252)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHH
Confidence 334678899999999999999999987653211 1 11111234567899999999999999999999999999999999
Q ss_pred HccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhc-cccc
Q 025168 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKR 201 (257)
Q Consensus 123 ~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~-~~~~ 201 (257)
+.|+++|.+.++||++|++|+++|+.+++.+.+... .+.....++.+..++++.|+++||+|+++++.+. |+++
T Consensus 94 ~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~ 168 (252)
T PLN00027 94 IGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE-----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKK 168 (252)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999988765421 1223345677888999999999999999999875 4443
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 202 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
. . .+.+.|+.||+++..+.++++++||++||||||||||++++ .|++||
T Consensus 169 ~-~---~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~w 217 (252)
T PLN00027 169 G-D---LGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHW 217 (252)
T ss_pred C-C---ccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhh
Confidence 2 1 13478999999999999999999999999999999999986 799998
No 11
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=7.1e-39 Score=282.17 Aligned_cols=195 Identities=25% Similarity=0.393 Sum_probs=162.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC
Q 025168 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 47 ~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~ 126 (257)
.++++|++++||+|||+|+|++++++....... ...+...+++++|+.+++.+++++++||+|+|||||+++++.++
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 356889999999999999999998765432211 12345667889999999999999999999999999999999999
Q ss_pred CcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccCCCC
Q 025168 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDS 206 (257)
Q Consensus 127 ~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~ 206 (257)
++|.+++.||++|++|+++|+++++.+++.. ..+.....|+.+..++++.|+++|++|+++++.+.++++..
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~-----~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~--- 186 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVT-----PEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAV--- 186 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccC---
Confidence 9999999999999999999999999988532 11222334556778999999999999999999875544321
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 207 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 207 ~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.+.|+.+|+++.+..++.+++||++|||||+|||+++.+ .|+++|
T Consensus 187 --~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~w 232 (283)
T PLN00182 187 --GELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIW 232 (283)
T ss_pred --CcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---ccccee
Confidence 2357999999999999999999999999999999999875 688887
No 12
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=7.3e-39 Score=283.22 Aligned_cols=194 Identities=26% Similarity=0.385 Sum_probs=161.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC
Q 025168 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 47 ~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~ 126 (257)
..+++|++++||+|||+|+|++++......... ...+...+++++|+++++.+++++++||+|+|||||+++++.++
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~---~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYD---GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 446789999999999999999987544221111 11245667899999999999999999999999999999999999
Q ss_pred CcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccCCCC
Q 025168 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDS 206 (257)
Q Consensus 127 ~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~ 206 (257)
++|.+.++||++|++|+++|+++++.++++.. ..+. ..|+.+..++++.|+++||+|+++++.+.+++++.
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~----~~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~--- 214 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPFM----SGGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAV--- 214 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCCCc---
Confidence 99999999999999999999999999987531 1122 23566788999999999999999999765443321
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 207 HVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 207 ~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
..+.++.+|+++...+++.+++||++||||||||||++.+ .|+++|
T Consensus 215 --~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~w 260 (298)
T PLN00026 215 --GELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIW 260 (298)
T ss_pred --CCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---Cchhee
Confidence 2357899999999999999999999999999999999875 799888
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=5e-37 Score=269.51 Aligned_cols=224 Identities=25% Similarity=0.336 Sum_probs=172.5
Q ss_pred hhhhhhhhhcccccccCCCCCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHH
Q 025168 17 ERQPIGTSAQSDKDYKEPPPAPLFEPGE-LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFG 95 (257)
Q Consensus 17 ~~q~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 95 (257)
.-|..|..+.....-+.|..++..+.-. .-+.+.+|.+++||++||+++|++++++....... ...+...+++++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---~~~~~~~~al~~G 86 (274)
T PLN00183 10 VDQEAGSTASTLNGDDHPKRQRLFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---GEVGLLEYAATAG 86 (274)
T ss_pred hhhhhcCCCCcccCCCCchhhhhccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CccchHHHHHHHH
Confidence 3466666553332222232333333222 12346789999999999999999998765422211 1234566788999
Q ss_pred HHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCc
Q 025168 96 GMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTK 175 (257)
Q Consensus 96 ~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 175 (257)
+.+++.+++++++||+|+|||+|+++++.++++|.++++||++|++|+++|+++++.+++... ......|..+.
T Consensus 87 l~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~------~~~~~~p~~~~ 160 (274)
T PLN00183 87 LTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA------DLMTTKPAQGC 160 (274)
T ss_pred HHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccCCCcccH
Confidence 999999999999999999999999999999999999999999999999999999998886531 11222344456
Q ss_pred cchhHHHHHHHHHHHHHHHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCC
Q 025168 176 GDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD 255 (257)
Q Consensus 176 ~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~ 255 (257)
.++++.|+++|++|++.++.+.+++++. +.+.|+.+|+.+.+.+++.+++||++|||||+|||+++.. .|++
T Consensus 161 ~~~~~~E~v~T~iLv~~i~~~~~~~~~~-----~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~---~~~~ 232 (274)
T PLN00183 161 SSAFWVEFIATFIVMFLAASLTSQPQSL-----GHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSW---DFKD 232 (274)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccccCC-----CCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCC---Chhh
Confidence 7899999999999999999887765322 2357899999999999999999999999999999999874 7888
Q ss_pred CC
Q 025168 256 HV 257 (257)
Q Consensus 256 ~w 257 (257)
+|
T Consensus 233 ~w 234 (274)
T PLN00183 233 IW 234 (274)
T ss_pred ee
Confidence 87
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=1e-36 Score=262.63 Aligned_cols=201 Identities=40% Similarity=0.620 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccc
Q 025168 52 RAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTR 131 (257)
Q Consensus 52 r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~ 131 (257)
|++++||+|||+++++++++......+++ ...+...+++++|+.+.+.+++++++||+|+|||+|+++++.++++|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHH
Confidence 56889999999999999988765433221 1234566789999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCc-------ccccCCCCccchhHHHHHHHHHHHHHHHHhccccccCC
Q 025168 132 AVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGA-------NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNAR 204 (257)
Q Consensus 132 ~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~ 204 (257)
.++||++|++|+++|+.+.+.+++++..+..+... +.+.++.+..++++.|+++|++|+++++...++++...
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~ 158 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPP 158 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCC
Confidence 99999999999999999999998876332222111 22345667889999999999999999999887654311
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 205 DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 205 ~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
.....|+.+|+.+.+..+.++++||+++|||||||||++.+..+.|+++|
T Consensus 159 ---~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~ 208 (228)
T cd00333 159 ---PGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFW 208 (228)
T ss_pred ---CCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceee
Confidence 12468999999999999999999999999999999999985223588887
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=1.1e-35 Score=254.27 Aligned_cols=197 Identities=40% Similarity=0.662 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCC-cC-CccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchh
Q 025168 56 AEFMATFLFLYITVLTVMGVSKSNT-KC-STVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAV 133 (257)
Q Consensus 56 aEf~gT~~lv~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~ 133 (257)
+||+||++|+|+++++......... +. ...+...+++++|+.++..+++++++||+|+|||+|+++++.++++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 5999999999999988765332211 11 111456779999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccCCCCCCCcchh
Q 025168 134 FYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP 213 (257)
Q Consensus 134 ~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~~ 213 (257)
+||++|++|+++|+.+++.++++.. +..........++.+..++++.|+++|++|+++++...+++++... ....|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~---~~~~~ 156 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLF-PGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPR---GGFAP 156 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc-cCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCC---CccHH
Confidence 9999999999999999999887752 1111111112345677899999999999999999998776543221 23689
Q ss_pred HHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 214 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 214 ~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.+|+.+...++..+++||+++||||+|+|+++.++ ..|+++|
T Consensus 157 ~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~-~~~~~~~ 199 (216)
T TIGR00861 157 LAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGL-AGWGNHW 199 (216)
T ss_pred HHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcc-cccccee
Confidence 999999999999999999999999999999998742 4688877
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.74 E-value=6.4e-18 Score=149.27 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=97.7
Q ss_pred ccchhhhhhhhhhccccc---ccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDKD---YKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
--|+++|++|+..+.... ++..+ ....... ...+.++.+++|+++|++|+++++++... .. . . .. .
T Consensus 121 ~~Yi~aQ~lGa~~ga~~~~~~~~~~~-~~~~~~~--p~~s~~~a~~~E~l~TfiLv~~i~~~~~~-~~--~-~--~~--~ 189 (283)
T PLN00182 121 PLYIGAQLTGSLLASLTLRLMFNVTP-EAFFGTT--PTDSSGQALVAEIIISFLLMFVISGVATD-SR--A-V--GE--L 189 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-cceeeCC--CCcchHHHHHHHHHHHHHHHHHHHhheec-cc--c-C--Cc--c
Confidence 369999999999854311 11111 1111111 11356899999999999999998865432 11 1 1 11 1
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcC
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG 155 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~ 155 (257)
.++++|+.+++.+++.+++||+|+|||+|+++++.++ .|.+.|+||++|++|+++|+++++.+..
T Consensus 190 ~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 190 AGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred hhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999865 4889999999999999999999998864
No 17
>PLN00026 aquaporin NIP; Provisional
Probab=99.70 E-value=2.6e-17 Score=146.12 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=96.8
Q ss_pred cchhhhhhhhhhcccccc--cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHH
Q 025168 14 KFSERQPIGTSAQSDKDY--KEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIA 91 (257)
Q Consensus 14 ~y~~~q~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (257)
-|+++|++|++.+....+ ..+.... . ......+.++.++.||++||+|+++++++.. ..+ .. .. ..+
T Consensus 151 ~YiiaQilGAi~aa~~~~~~~~~~~~~--g-~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~-~~~--~~---~~--~~~ 219 (298)
T PLN00026 151 AYIAAQVSASICASFALKGVFHPFMSG--G-VTVPSVSTGQAFALEFIITFNLLFVVTAVAT-DTR--AV---GE--LAG 219 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccC--c-eeeecccHHHHHHHHHHHHHHHHHhheeeec-CCC--Cc---CC--ccc
Confidence 599999999999443211 1110000 0 0011236789999999999999999875321 111 11 11 136
Q ss_pred HHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCC
Q 025168 92 WAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS 156 (257)
Q Consensus 92 l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~ 156 (257)
+++|+.+++.+++.+++||+|+|||+|+++++.++ +|.+.|+||++|++||++|+++++.+...
T Consensus 220 l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~~~~~wVy~vaPilGAilga~ly~~~~~~ 283 (298)
T PLN00026 220 IAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-NYRAIWIYLVAPTLGALAGAGTYTAVKLR 283 (298)
T ss_pred hHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-CchheeHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88999999999999999999999999999999876 79999999999999999999998887543
No 18
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.70 E-value=3.2e-17 Score=141.34 Aligned_cols=135 Identities=23% Similarity=0.169 Sum_probs=98.4
Q ss_pred cccchhhhhhhhhhccc-------ccccCCCCCCC-----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 025168 12 ANKFSERQPIGTSAQSD-------KDYKEPPPAPL-----FEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSN 79 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~ 79 (257)
.--|+.+|.+|+..+.. ...++....+. .........+.+|.++.|+++|++|+++++......+..
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~- 157 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGP- 157 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccC-
Confidence 34699999999988322 11111111100 011112334678999999999999999988764321110
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCC--cccchhhHHhhhhhHHHHHHHHHHh
Q 025168 80 TKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL--SLTRAVFYMVMQCLGAVCGAGVVKG 152 (257)
Q Consensus 80 ~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~--~~~~~~~yi~aQ~~Ga~~ga~~~~~ 152 (257)
......++.+|+.+....+..+++||+|+|||+|+++++.++. +|.+.|+||++|++|+++|+++.+.
T Consensus 158 -----~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 158 -----PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred -----CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 1112357889999999999999999999999999999999987 7999999999999999999988664
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.70 E-value=6.1e-17 Score=142.53 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=98.2
Q ss_pred ccchhhhhhhhhhcccc---cccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDK---DYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
--|+.+|++|+..+... .+...+ ....... ....++.+++|+++|++|++++++...... +. +. .
T Consensus 124 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~--~~~~~~p--~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~----~~---~~-~ 191 (274)
T PLN00183 124 PLYITAQTVGSVLATYVGVSVYGVKA--DLMTTKP--AQGCSSAFWVEFIATFIVMFLAASLTSQPQ----SL---GH-L 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--ccccCCC--cccHHHHHHHHHHHHHHHHHhhheeecccc----CC---CC-c
Confidence 36999999999994432 111111 1111111 123578999999999999999876543211 10 11 1
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.++.+|+.+++.+++.+++||+|+|||+|+++++.+ .+|.+.|+||++|++|+++|+++++.++.+.
T Consensus 192 ~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~~~~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 192 SGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDFKDIWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred eehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CChhheehHHHHHHHHHHHHHHHHHHHhccC
Confidence 367889999999999999999999999999999987 4799999999999999999999999997655
No 20
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.4e-17 Score=140.09 Aligned_cols=141 Identities=19% Similarity=0.140 Sum_probs=108.3
Q ss_pred ccccccccchhhhhhhhhhcccccccCCCCC----CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcC
Q 025168 7 DVKLGANKFSERQPIGTSAQSDKDYKEPPPA----PLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKC 82 (257)
Q Consensus 7 ~~~~~~~~y~~~q~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~ 82 (257)
+.+..+.-|+.+|++|+..+....+...+.+ ...........+..+.++.|++.||+||+.+++......++
T Consensus 84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---- 159 (238)
T KOG0223|consen 84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS---- 159 (238)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc----
Confidence 4555677899999999999655444333331 11111122233567899999999999999887533321111
Q ss_pred CccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 83 STVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 83 ~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
...++.+|+.+.+.+++.+++||+++|||+|+++++..+. |..+|+||++|++|+++++++.+.++.++
T Consensus 160 -----~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~-w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 160 -----ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS-WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred -----ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 2347899999999999999999999999999999998885 99999999999999999999999998665
No 21
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.65 E-value=5.3e-16 Score=132.72 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=94.0
Q ss_pred ccchhhhhhhhhhccc--ccccCCC-CCC-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchh
Q 025168 13 NKFSERQPIGTSAQSD--KDYKEPP-PAP-LFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQ 88 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~--~~~~~~~-~~~-~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
--|+.+|.+|+..+.. +....+. ..+ ..........+.++.++.|+++|++|+++++.+... ++. ... + .
T Consensus 80 ~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~--~~~--~~~-~-~ 153 (216)
T TIGR00861 80 PVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDP--RNR--VPR-G-G 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecC--CCC--CCC-C-c
Confidence 4699999999998432 1111110 000 000001112467899999999999999988765432 111 011 1 1
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHcc-CCcccchhhHHhhhhhHHHHHHHH
Q 025168 89 GIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR-KLSLTRAVFYMVMQCLGAVCGAGV 149 (257)
Q Consensus 89 ~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g-~~~~~~~~~yi~aQ~~Ga~~ga~~ 149 (257)
..++.+|+.++..++..+++||+|+|||+++++++.+ ..+|.+.|+||++|++|+++++.+
T Consensus 154 ~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 154 FAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999999999999976 578999999999999999999875
No 22
>PLN00184 aquaporin NIP1; Provisional
Probab=99.62 E-value=2.2e-15 Score=133.95 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=96.9
Q ss_pred cchhhhhhhhhhcccc-------cccCCCCC-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCcc
Q 025168 14 KFSERQPIGTSAQSDK-------DYKEPPPA-PLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTV 85 (257)
Q Consensus 14 ~y~~~q~~g~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~ 85 (257)
-|+++|++|+..+... +...+... ..... .....+.++.++.|+++||+|+++++++..... . .
T Consensus 134 ~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~-t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~---~---~- 205 (296)
T PLN00184 134 AYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIG-SSPVGSDLQAFVMEFIVTFYLMFIISGVATDNR---A---I- 205 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhccccccceeec-cCcCCcHHHHHHHHHHHHHHHHHHHHheeccCc---C---C-
Confidence 6999999999984321 11111000 00000 011135789999999999999999886533111 0 0
Q ss_pred chhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 86 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 86 ~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
+. ..++.+|+.++...++.+++||+++|||+++++++... .|..+|+||++|++|+++|+++++.+...+
T Consensus 206 ~~-~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~~~~~WVy~vgPilGa~laal~y~~l~~~~ 275 (296)
T PLN00184 206 GE-LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-CYKGIWIYIVAPTLGAIAGAWVYNTVRYTD 275 (296)
T ss_pred Cc-chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-cccccchHHhHHHHHHHHHHHHHHHHhcCC
Confidence 11 23688999999999999999999999999999999755 478999999999999999999988886533
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.59 E-value=6.9e-15 Score=128.22 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=98.4
Q ss_pred ccchhhhhhhhhhcccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHH
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAW 92 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (257)
--|+.+|++|+..+....+...+.............+..+.++.|+++||+|++.++...... .+... ....++
T Consensus 102 ~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~--~~~~~----~~~~p~ 175 (250)
T PLN00166 102 FFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADP--KKGSL----GTIAPI 175 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccc--ccccc----ccchhH
Confidence 369999999999944322111111110000111234568999999999999999987653211 11000 012478
Q ss_pred HHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 93 AFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 93 ~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.+|+.++......++.||+.+|||+++++++..+ .|.+.|+||++|++|+++++++.+.++.+.
T Consensus 176 ~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~ 239 (250)
T PLN00166 176 AIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFSQIWIYWVGPLVGGALAGLIYGDVFIGS 239 (250)
T ss_pred HHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-CCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999865 588999999999999999999987776443
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.56 E-value=1.8e-14 Score=125.94 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=97.8
Q ss_pred ccchhhhhhhhhhcccccccCCCC--CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHH
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPPP--APLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGI 90 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
--|+.+|++|+..+....+...+. ....... ...+.++.++.|+++||+|++.++..... .++. +. + ...
T Consensus 104 ~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~-~~~~---~~-~-~~~ 175 (252)
T PLN00027 104 ILYWIAQLLGSVVACLLLKFSTGGLETSAFSLS--SGVGVWNAFVFEIVMTFGLVYTVYATAVD-PKKG---DL-G-IIA 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCC--CCccHHHHHHHHHHHHHHHHHHHHHhccc-cccC---Cc-c-chH
Confidence 369999999999844321111111 1111111 12357899999999999999998764321 1111 11 1 124
Q ss_pred HHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCC
Q 025168 91 AWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS 156 (257)
Q Consensus 91 ~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~ 156 (257)
++.+|+.+....+..++.||+.+|||+++++++... .|..+|+||++|++|+++|+++++.++.+
T Consensus 176 p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~-~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 176 PIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred HHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh-cchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888998889999999999999999999999876 48899999999999999999999888743
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.55 E-value=1.7e-14 Score=124.46 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=97.4
Q ss_pred cccchhhhhhhhhhcccccc--cCCCCC------CCC----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 025168 12 ANKFSERQPIGTSAQSDKDY--KEPPPA------PLF----EPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSN 79 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~~~--~~~~~~------~~~----~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~ 79 (257)
.-.|+.+|.+|+..+....+ ..++.. ... ........+..+.++.|+++|++|++.++.... .+.
T Consensus 81 ~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~--~~~- 157 (231)
T PRK05420 81 LVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATD--KRA- 157 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhC--CCC-
Confidence 34799999999999542111 100000 000 000112235789999999999999999886542 111
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC-CcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 80 TKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK-LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 80 ~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~-~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
. .+ ..++.+|+.+....+..++.||+.+|||+++++++..+ .++..+|+||++|++|+++++++.+.++.++
T Consensus 158 --~--~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 158 --P--AG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred --C--Cc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 1 11 24788999999999999999999999999999999753 3456899999999999999999988876554
No 26
>PLN00167 aquaporin TIP5; Provisional
Probab=99.52 E-value=3.8e-14 Score=123.90 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=97.4
Q ss_pred cccchhhhhhhhhhcccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHH
Q 025168 12 ANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIA 91 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (257)
.--|+.+|.+|+.......+...+.............+.++.++.|+++|++|++.++.... .+. .... ...+
T Consensus 105 ~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~--~~~-~~~~----~~~p 177 (256)
T PLN00167 105 AMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGD--PRR-GLLG----AIGP 177 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHhcc--ccc-cCCC----Ccch
Confidence 34799999999998433111111000000000011234578899999999999998775432 111 1111 1236
Q ss_pred HHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 92 WAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 92 l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
+.+|+.++...+..++.||+.+|||+++++.+... +|...|+||++|++|++++++++..++.+.
T Consensus 178 l~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~ 242 (256)
T PLN00167 178 LAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLLGGAVAGLLYDNVVFPT 242 (256)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-CccCcEEEeHHHHHHHHHHHHHHHHHhCCC
Confidence 78899999999999999999999999999999765 578889999999999999999998888655
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.51 E-value=9e-14 Score=119.46 Aligned_cols=135 Identities=21% Similarity=0.180 Sum_probs=96.3
Q ss_pred ccchhhhhhhhhhccc-------ccccCCC----CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 025168 13 NKFSERQPIGTSAQSD-------KDYKEPP----PAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTK 81 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~ 81 (257)
..|+++|++|++.+.. ...++.. ...-........++..+.++.|+++||+|++.+.+.... + +
T Consensus 87 ~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~---~--~ 161 (241)
T COG0580 87 LPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDD---G--N 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhcc---C--c
Confidence 3799999999999332 1111111 111111222333467899999999999999998774431 1 0
Q ss_pred CCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC----Ccc----cchhhHHhhhhhHHHHHHHHHHhh
Q 025168 82 CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK----LSL----TRAVFYMVMQCLGAVCGAGVVKGF 153 (257)
Q Consensus 82 ~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~----~~~----~~~~~yi~aQ~~Ga~~ga~~~~~~ 153 (257)
. +.+ ..++.+|+.++.+..+.++.||..+|||+++++.+... .+- ++.|+||++|++|+++|+++.+.+
T Consensus 162 ~-~~~--~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~ 238 (241)
T COG0580 162 A-NAG--FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLL 238 (241)
T ss_pred c-ccc--chHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHH
Confidence 0 111 23788999999999999999999999999999998322 111 589999999999999999999876
Q ss_pred cC
Q 025168 154 EG 155 (257)
Q Consensus 154 ~~ 155 (257)
+.
T Consensus 239 ~~ 240 (241)
T COG0580 239 LG 240 (241)
T ss_pred cc
Confidence 54
No 28
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.47 E-value=1.7e-13 Score=122.07 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHcc--
Q 025168 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR-- 125 (257)
Q Consensus 48 ~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g-- 125 (257)
.+..+.++.|+++||+|+++++.... .+... ..+ ..++.+|+.+.++.+..++.||+.+|||+++++++..
T Consensus 181 ~s~~~a~~~E~i~T~iLv~~ila~~d--~~~~~---~~~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~ 253 (294)
T PTZ00016 181 EGNFYAIFSELILTAILLLVILAITD--PNNCP---AFN--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAI 253 (294)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc--CccCC---CcC--cccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHH
Confidence 45689999999999999998886532 11111 111 1367788888888898999999999999999999963
Q ss_pred ---CCccc----chhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 126 ---KLSLT----RAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 126 ---~~~~~----~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
+..|. +.|+||++|++|+++|+++++.+.++.
T Consensus 254 ~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 254 LWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred hccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 33444 589999999999999999988887654
No 29
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.45 E-value=2.5e-13 Score=116.85 Aligned_cols=131 Identities=22% Similarity=0.225 Sum_probs=92.3
Q ss_pred ccchhhhhhhhhhcccccc--cCC--CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchh
Q 025168 13 NKFSERQPIGTSAQSDKDY--KEP--PPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQ 88 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
..|+.+|++|+..+....+ ..+ ..............+..+.++.|+++|++|+++++..... +... ..+.
T Consensus 93 ~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~--~~~~---~~~~- 166 (227)
T PF00230_consen 93 IVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADD--KRKF---PLGP- 166 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTST--TSSS---TSSG-
T ss_pred eeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccc--cccc---cccc-
Confidence 4699999999999433111 111 0111111112223456899999999999999987765432 1111 1111
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHH
Q 025168 89 GIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVV 150 (257)
Q Consensus 89 ~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~ 150 (257)
..++.+|+.+....+..++.+|+.+|||++++..+.... |...|+||++|++|+++|++++
T Consensus 167 ~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~-~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 167 LAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI-WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-HTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEEeecccccccccccccCchhhcCceeeccc-CCeEEEEEehHHHHHHHHHhhC
Confidence 236888888888888889999999999999999998776 8999999999999999998764
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.62 E-value=4.1e-08 Score=86.12 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=93.8
Q ss_pred cchhhhhhhhhhccc----------------ccccCCC--CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025168 14 KFSERQPIGTSAQSD----------------KDYKEPP--PAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV 75 (257)
Q Consensus 14 ~y~~~q~~g~~~~~~----------------~~~~~~~--~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~ 75 (257)
-|.++|.+|+..++. ++....| ....+-.-....-++++.++-||+||.+|+.+++..+ .
T Consensus 113 ~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~--D 190 (316)
T KOG0224|consen 113 VYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLCLFAIT--D 190 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhheeEEe--c
Confidence 488999999988433 1111111 0111111122334789999999999999987765432 2
Q ss_pred ccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHc----c--C--Cc--ccchhhHHhhhhhHHHH
Q 025168 76 SKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLA----R--K--LS--LTRAVFYMVMQCLGAVC 145 (257)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~----g--~--~~--~~~~~~yi~aQ~~Ga~~ 145 (257)
.+++ ... -..++.+|+.++++-.+.|-.+|--+|||+.+++.+. | . ++ -...|+-|+++++|+++
T Consensus 191 ~rN~---~p~--g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~ 265 (316)
T KOG0224|consen 191 KRNP---IPT--GLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAIL 265 (316)
T ss_pred CCCC---CCc--chhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhh
Confidence 2221 111 2347889999999999999999999999999998875 1 1 11 14567789999999999
Q ss_pred HHHHHHhhcCCc
Q 025168 146 GAGVVKGFEGSK 157 (257)
Q Consensus 146 ga~~~~~~~~~~ 157 (257)
|++++..+...+
T Consensus 266 G~~iY~~~Ig~h 277 (316)
T KOG0224|consen 266 GGWIYDFFIGFH 277 (316)
T ss_pred hhhhheeeeecc
Confidence 999998887544
No 31
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=64.74 E-value=88 Score=27.25 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc-chhhcCC--
Q 025168 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NYERLGG-- 164 (257)
Q Consensus 88 ~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~-~~~~~~~-- 164 (257)
+..++.+++.+...+...+..- -=|-.......+.|+.+|++.+--|.-=.+|=++|++++-.+.... .......
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLf--Tgn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~ 135 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELF--TGNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMG 135 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---T--TTTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhc--ccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 3345555555555555544332 2266656667778888988877666666666666665554443111 0110000
Q ss_pred -Cc---ccccCCCCccchhHHHHHHHHHHHHHHHHhccc
Q 025168 165 -GA---NVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDA 199 (257)
Q Consensus 165 -~~---~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~ 199 (257)
.. ....-+.+..+.|+.=.+|.++.++.++.....
T Consensus 136 ~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~~~ 174 (250)
T PF01226_consen 136 EYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAFAA 174 (250)
T ss_dssp HHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 001123456778888889999999988876533
No 32
>PRK10805 formate transporter; Provisional
Probab=62.59 E-value=1.1e+02 Score=27.18 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhcC-cCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhc-CCcchhhcCCC---
Q 025168 91 AWAFGGMIFALVYCTAG-ISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFE-GSKNYERLGGG--- 165 (257)
Q Consensus 91 ~l~~g~~v~~~i~~~~~-isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~-~~~~~~~~~~~--- 165 (257)
++.+.+.+.+.++..+. .+| |--.+++ .+.+|.++.+..-.|.-=.+|=++|++++-.+. ....+....+.
T Consensus 72 ~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~~~ 147 (285)
T PRK10805 72 GICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGL 147 (285)
T ss_pred HHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHHHH
Confidence 44555555545554443 344 5555543 577888888887444444444444444433222 11101000000
Q ss_pred -cccc---cCCCCccchhHHHHHHHHHHHHHHHHhc
Q 025168 166 -ANVV---AHGYTKGDGLGAEIIGTFVLVYTVFSAT 197 (257)
Q Consensus 166 -~~~~---~~~~s~~~~~~~E~~~T~~l~~~il~~~ 197 (257)
.... .-+.+..+.|+-=.+|-++.++.++...
T Consensus 148 ~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~~ 183 (285)
T PRK10805 148 NVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 1134566778888889999988887543
No 33
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=42.46 E-value=2.4e+02 Score=24.93 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcc
Q 025168 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGAN 167 (257)
Q Consensus 88 ~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~ 167 (257)
+.-++.+++.+.+.++..+..-=+ |--........++++|++.+--|+-=.+|=++|++++..++.-........+..
T Consensus 65 lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~ 142 (265)
T COG2116 65 LVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQW 142 (265)
T ss_pred HHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchh
Confidence 333455555554455543332111 323333344578888888887777777777777766655541110000111111
Q ss_pred ---c--c---cCCCCccchhHHHHHHHHHHHHHHHHhcc
Q 025168 168 ---V--V---AHGYTKGDGLGAEIIGTFVLVYTVFSATD 198 (257)
Q Consensus 168 ---~--~---~~~~s~~~~~~~E~~~T~~l~~~il~~~~ 198 (257)
. . .-+.+..+.|+.=++|-++.++.++....
T Consensus 143 ~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~ 181 (265)
T COG2116 143 GLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYS 181 (265)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0 11234467777888888888888876543
No 34
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=40.22 E-value=8.3 Score=35.25 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=18.3
Q ss_pred hhcCcCCcccChHHHHHHHHcc
Q 025168 104 CTAGISGGHINPAVTFGLLLAR 125 (257)
Q Consensus 104 ~~~~isGah~NPavTla~~~~g 125 (257)
+.++-+|||+.||++++-.+..
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 3456699999999999999864
No 35
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=39.88 E-value=9.3 Score=29.21 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.1
Q ss_pred CcCCcccChHHHHHHHHccC
Q 025168 107 GISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 107 ~isGah~NPavTla~~~~g~ 126 (257)
.-|+||+||.+.++..+.++
T Consensus 6 ~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHhcc
Confidence 34789999999999999764
No 36
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=34.94 E-value=3e+02 Score=23.72 Aligned_cols=82 Identities=20% Similarity=0.126 Sum_probs=44.8
Q ss_pred ChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCC--cchhhc---CCCccc---ccCCCCccchhHHHHHH
Q 025168 114 NPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS--KNYERL---GGGANV---VAHGYTKGDGLGAEIIG 185 (257)
Q Consensus 114 NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~--~~~~~~---~~~~~~---~~~~~s~~~~~~~E~~~ 185 (257)
|-.......+.|+.+|.+..-.|.-=.+|=++|++++-.+... ...+.. ...... ..-+.+..+.|+.=++|
T Consensus 68 n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gilc 147 (239)
T TIGR00790 68 NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGVGSLAIAEHKAHHTFVEAFFLGILC 147 (239)
T ss_pred chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 4444434466888888887777766666666666555444310 000000 000000 11234566777788888
Q ss_pred HHHHHHHHHH
Q 025168 186 TFVLVYTVFS 195 (257)
Q Consensus 186 T~~l~~~il~ 195 (257)
.++..+.++.
T Consensus 148 n~lV~lav~~ 157 (239)
T TIGR00790 148 NWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 37
>COG0730 Predicted permeases [General function prediction only]
Probab=32.38 E-value=2.2e+02 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=24.3
Q ss_pred ccCCcccchhhHHhhhhhHHHHHHHHHHhh
Q 025168 124 ARKLSLTRAVFYMVMQCLGAVCGAGVVKGF 153 (257)
Q Consensus 124 ~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~ 153 (257)
.++.+|+....+..+=++|+++|+.+...+
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456689999999999999999996666554
No 38
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=30.71 E-value=2.3e+02 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=22.3
Q ss_pred CCcccchhhHHhhhhhHHHHHHHHHHh
Q 025168 126 KLSLTRAVFYMVMQCLGAVCGAGVVKG 152 (257)
Q Consensus 126 ~~~~~~~~~yi~aQ~~Ga~~ga~~~~~ 152 (257)
+.+|+....+.++-+.|..+|+.+...
T Consensus 60 ~i~~~~~~~~~~~~~~g~~iG~~l~~~ 86 (240)
T PF01925_consen 60 NIDWKIVLPLIIGALIGVVIGAWLLSL 86 (240)
T ss_pred ccchhhhhhhhhHhHHHHHHHHhhhcc
Confidence 478999999999999999998777663
No 39
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=23.92 E-value=3.7e+02 Score=25.57 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhc----CCcchhhcCCCcc
Q 025168 92 WAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFE----GSKNYERLGGGAN 167 (257)
Q Consensus 92 l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~----~~~~~~~~~~~~~ 167 (257)
+..|+...+.....|..+ .+.|-+-..--++...+-....++-..-++-|-.=++.+++.+. +.. .+..+.+..
T Consensus 139 L~~GlaMil~t~~lGQLt-tQVNAshcMlDyINnyFalFTlyvam~IEfsGvmHssYLIq~i~~~~sGKP-I~SNE~Prt 216 (512)
T PF03842_consen 139 LDIGLAMILFTCVLGQLT-TQVNASHCMLDYINNYFALFTLYVAMAIEFSGVMHSSYLIQNILSALSGKP-IESNEPPRT 216 (512)
T ss_pred hccchHHHHHHHhhcccc-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC-cccCCCcch
Confidence 444555444555566655 78888888888888877777777777788888877777666553 222 111111111
Q ss_pred cccCCCCccchhHHHHHHHHHHHHHHHHhccccccCCC
Q 025168 168 VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARD 205 (257)
Q Consensus 168 ~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~ 205 (257)
....-+-+++.+++-.+..|.+-.++-+..+.+..-.+
T Consensus 217 g~~~~FFWgRvlmSl~ILgF~lAVtl~ALf~G~Ttmw~ 254 (512)
T PF03842_consen 217 GFQFAFFWGRVLMSLAILGFCLAVTLVALFNGKTTMWP 254 (512)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceecC
Confidence 11111224566777777778777777676666555443
No 40
>PRK11562 nitrite transporter NirC; Provisional
Probab=22.75 E-value=5.4e+02 Score=22.73 Aligned_cols=105 Identities=9% Similarity=-0.017 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCC--cchhhcCCCc-c
Q 025168 91 AWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS--KNYERLGGGA-N 167 (257)
Q Consensus 91 ~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~--~~~~~~~~~~-~ 167 (257)
+..+++.+.+.++..+..- -=|-.......+.|+.++++.+-.|.-=.+|=++|++++..+... .......... .
T Consensus 62 g~~F~~GLilVi~~G~eLF--Tgn~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~~ 139 (268)
T PRK11562 62 GATFGIALTLVIIAGSELF--TGHTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVH 139 (268)
T ss_pred HHHHHHHHHHHHHhCcccc--ccchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 4455555544444433321 114344434566788888877766666666666665555443211 0001000000 0
Q ss_pred c---ccCCCCccchhHHHHHHHHHHHHHHHHhc
Q 025168 168 V---VAHGYTKGDGLGAEIIGTFVLVYTVFSAT 197 (257)
Q Consensus 168 ~---~~~~~s~~~~~~~E~~~T~~l~~~il~~~ 197 (257)
. ...+.+..+.|+-=.+|-++.++.++...
T Consensus 140 ~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~ 172 (268)
T PRK11562 140 SVALAKTTAPAMVLFFKGALCNWLVCLAIWMAI 172 (268)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01134556778888888898888887644
No 41
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.73 E-value=30 Score=19.63 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=13.4
Q ss_pred CCCcCccchhhhHHHHH
Q 025168 229 PITGTGINPARSLGAAI 245 (257)
Q Consensus 229 ~~tG~~~NPAr~~gp~i 245 (257)
-++|.++||.--|..+.
T Consensus 5 qisgsslnpscrfssay 21 (33)
T PRK09979 5 QISGSSLNPSCRFSSAY 21 (33)
T ss_pred cccCCcCCccccccccc
Confidence 36889999998887664
Done!