Query 025168
Match_columns 257
No_of_seqs 154 out of 1602
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 2.7E-51 9.1E-56 363.6 15.4 230 27-257 37-266 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 1.3E-46 4.6E-51 335.6 20.1 222 26-257 22-248 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 1.5E-46 5.1E-51 321.0 18.5 199 49-257 2-200 (223)
4 2zz9_A Aquaporin-4; water tran 100.0 1.4E-45 4.7E-50 326.3 21.2 206 42-257 4-209 (301)
5 1j4n_A Aquaporin 1; membrane p 100.0 1.8E-45 6.2E-50 322.6 21.3 206 43-257 3-212 (271)
6 3llq_A Aquaporin Z 2; aquapori 100.0 1E-45 3.5E-50 320.6 15.4 202 47-257 26-232 (256)
7 2b6o_A Aquaporin-0, lens fiber 100.0 1.6E-44 5.5E-49 315.3 22.7 201 43-257 2-202 (263)
8 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 4.9E-45 1.7E-49 318.8 15.4 201 43-257 4-205 (266)
9 2w2e_A AQY1, aquaporin, aquapo 100.0 5.3E-44 1.8E-48 314.0 19.1 199 47-257 41-243 (279)
10 2o9g_A Aquaporin Z; integral m 100.0 2.7E-44 9.3E-49 309.2 15.2 199 50-257 4-209 (234)
11 2f2b_A Aquaporin AQPM; protein 100.0 8.6E-44 3E-48 308.4 17.5 204 49-257 3-223 (246)
12 1ldf_A Glycerol uptake facilit 100.0 1.3E-43 4.5E-48 312.6 13.9 193 49-247 6-214 (281)
13 3c02_A Aquaglyceroporin; membr 100.0 1.4E-43 4.8E-48 308.9 12.0 194 48-248 7-205 (258)
14 2f2b_A Aquaporin AQPM; protein 99.8 1.6E-18 5.4E-23 149.8 8.6 136 12-155 100-245 (246)
15 2w2e_A AQY1, aquaporin, aquapo 99.6 3.9E-16 1.3E-20 136.8 8.6 137 13-157 131-267 (279)
16 2b6o_A Aquaporin-0, lens fiber 99.6 2.2E-15 7.7E-20 131.1 12.0 137 13-157 87-226 (263)
17 2o9g_A Aquaporin Z; integral m 99.6 6.1E-16 2.1E-20 132.6 6.9 136 13-157 85-233 (234)
18 3llq_A Aquaporin Z 2; aquapori 99.6 8.4E-16 2.9E-20 132.9 7.3 133 13-154 110-253 (256)
19 3iyz_A Aquaporin-4; water tran 99.6 4.5E-15 1.5E-19 132.4 10.9 137 13-157 133-272 (340)
20 2zz9_A Aquaporin-4; water tran 99.6 3.8E-15 1.3E-19 131.6 10.1 137 12-156 93-232 (301)
21 3d9s_A Aquaporin-5, AQP-5; aqu 99.6 2.7E-15 9.2E-20 130.7 8.4 137 13-157 89-229 (266)
22 3gd8_A Aquaporin-4; proton exc 99.6 4.1E-15 1.4E-19 126.5 8.0 133 13-155 85-222 (223)
23 1j4n_A Aquaporin 1; membrane p 99.6 6.8E-15 2.3E-19 128.6 8.8 137 13-157 97-236 (271)
24 3cn5_A Aquaporin; membrane pro 99.5 6.1E-15 2.1E-19 130.5 7.8 140 12-157 142-290 (304)
25 3c02_A Aquaglyceroporin; membr 99.5 3E-14 1E-18 123.8 7.7 141 12-157 88-245 (258)
26 1ldf_A Glycerol uptake facilit 99.5 1.8E-14 6.2E-19 126.6 6.3 103 49-157 144-258 (281)
27 3s2u_A UDP-N-acetylglucosamine 50.2 2.3 7.8E-05 37.4 -1.1 21 106-126 9-29 (365)
28 3tds_E Formate/nitrite transpo 38.0 1.2E+02 0.0042 25.5 7.9 106 90-197 67-178 (268)
29 3kcu_A Probable formate transp 31.5 2.4E+02 0.0081 23.9 11.9 105 90-198 71-184 (285)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=2.7e-51 Score=363.61 Aligned_cols=230 Identities=74% Similarity=1.270 Sum_probs=185.3
Q ss_pred ccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhc
Q 025168 27 SDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTA 106 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~ 106 (257)
..||+++|++.+..+.+|+++++++|++++||+|||+|+|++++++.+.....++....+++.+++++|+.+++++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g 116 (304)
T 3cn5_A 37 HGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA 116 (304)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEee
Confidence 35888888888888889999999999999999999999999999877654333333456778899999999999999999
Q ss_pred CcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHH
Q 025168 107 GISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGT 186 (257)
Q Consensus 107 ~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T 186 (257)
++||||+|||||+++++.|+++|++++.||++|++||++|+++++.++++. ++..+.+...+.++.+..++|+.|+++|
T Consensus 117 ~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~-~~~~~~g~~~~~~~~s~~~~f~~E~i~T 195 (304)
T 3cn5_A 117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP-YNQFGGGANSVALGYNKGTALGAEIIGT 195 (304)
T ss_dssp TTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHTTTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred ccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcccccCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 5555555555667788899999999999
Q ss_pred HHHHHHHHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 187 FVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 187 ~~l~~~il~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
|+|+++|+.+.|+++...+++.+.+.|+.||++++++.++++++||++||||||||||+++++++.|+++|
T Consensus 196 fiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~W 266 (304)
T 3cn5_A 196 FVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQW 266 (304)
T ss_dssp HHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTT
T ss_pred HHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceE
Confidence 99999999988876644322234589999999999999999999999999999999999976667899998
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-46 Score=335.60 Aligned_cols=222 Identities=36% Similarity=0.574 Sum_probs=183.3
Q ss_pred cccccccCCCCCCCC-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHH
Q 025168 26 QSDKDYKEPPPAPLF-----EPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFA 100 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~ 100 (257)
-..+++.+|+.++.- ..++....+++|++++||+|||+|+|++++++.+.. ..++....+++.+++++|+++++
T Consensus 22 ~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~ 100 (340)
T 3iyz_A 22 MGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIAT 100 (340)
T ss_pred cCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHH
Confidence 455677776655522 123445568899999999999999999999887542 22223345678899999999999
Q ss_pred HHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhH
Q 025168 101 LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG 180 (257)
Q Consensus 101 ~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 180 (257)
++++++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++.. . ...+.+.+.++.+..++|+
T Consensus 101 ~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~-~-~~lg~~~~~~~~s~~~~f~ 178 (340)
T 3iyz_A 101 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV-V-GGLGVTTVHGNLTAGHGLL 178 (340)
T ss_pred heeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-c-CceeeccCCCccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987652 1 1223344566778899999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 181 AEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 181 ~E~~~T~~l~~~il~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
.|+++||+|+++|+.+.|+++... ..+.|+.||+++.+..+.++++||++||||||||||++.+ .|+++|
T Consensus 179 ~E~i~Tf~Lv~~Ila~~d~~~~~~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~W 248 (340)
T 3iyz_A 179 VELIITFQLVFTIFASCDDKRTDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHW 248 (340)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCc----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEe
Confidence 999999999999999988776432 2467999999998777877899999999999999999975 799998
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=321.00 Aligned_cols=199 Identities=39% Similarity=0.648 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCc
Q 025168 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (257)
Q Consensus 49 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~ 128 (257)
+++|++++||+|||+|++++++++.+.. ..++....+++.+++++|+.+++.+++++++||+|+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~-~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTT-TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 4689999999999999999999887542 222333457788999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccCCCCCC
Q 025168 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHV 208 (257)
Q Consensus 129 ~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~ 208 (257)
|++++.|+++|++||++|+.+++.+++++. . ...+.+.+.++.+..++++.|+++||+|+++++.+.|++++..
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~-~-~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~---- 154 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSV-V-GGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV---- 154 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-H-TTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc-c-cceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCc----
Confidence 999999999999999999999999987652 2 1233445667778889999999999999999999988776432
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 209 PILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 209 ~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.+.|+.||+++......+++.||++||||||||||++.+ +|++||
T Consensus 155 ~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~W 200 (223)
T 3gd8_A 155 TGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHW 200 (223)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTT
T ss_pred cCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEE
Confidence 2478999999987777777789999999999999999985 899999
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=1.4e-45 Score=326.32 Aligned_cols=206 Identities=38% Similarity=0.607 Sum_probs=173.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHH
Q 025168 42 PGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL 121 (257)
Q Consensus 42 ~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~ 121 (257)
.++..+.+++|++++||+|||+|+|++++++.+.... .+....+++.+++++|+++++++++++++||||+|||||+++
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~ 82 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM 82 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHH
Confidence 3456677899999999999999999999887654422 222345677889999999999999999999999999999999
Q ss_pred HHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhccccc
Q 025168 122 LLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 201 (257)
Q Consensus 122 ~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~ 201 (257)
++.|+++|.+++.||++|++||++|+++++.++++.. . ...+.+.+.++.+..++|+.|+++||+|+++|+.+.|+++
T Consensus 83 ~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~-~-~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~ 160 (301)
T 2zz9_A 83 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV-V-GGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKR 160 (301)
T ss_dssp HHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCG-G-GTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c-CceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999998752 2 2233444556778889999999999999999999888765
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 202 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
... +.+.|+.||+++....+.++++||++||||||||||++.+ .|++||
T Consensus 161 ~~~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~W 209 (301)
T 2zz9_A 161 TDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHW 209 (301)
T ss_dssp SCC----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTT
T ss_pred CCc----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCccee
Confidence 432 3478999999998888887789999999999999999985 899998
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=1.8e-45 Score=322.61 Aligned_cols=206 Identities=41% Similarity=0.661 Sum_probs=174.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHH
Q 025168 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKS----NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 118 (257)
Q Consensus 43 ~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavT 118 (257)
+|.++++++|++++||+||++|+|++++++.+.... +......+.+.+++++|+.+++.+++++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 466778899999999999999999999987754321 1112223577889999999999999999999999999999
Q ss_pred HHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcc
Q 025168 119 FGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD 198 (257)
Q Consensus 119 la~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~ 198 (257)
+++++.|+++|++++.||++|++||++|+++++.++++.. ....+...+.++.+..++++.|+++||+|+++|+.+.|
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d 160 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP--DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD 160 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--TCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--ccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999986531 11223444567778889999999999999999999988
Q ss_pred ccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 199 AKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 199 ~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+++... +.+.|+.||+++....+.++++||++||||||||||++.+ +|++||
T Consensus 161 ~~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~w 212 (271)
T 1j4n_A 161 RRRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHW 212 (271)
T ss_dssp SSCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTT
T ss_pred ccCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCccee
Confidence 765432 3488999999998777877789999999999999999975 899998
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1e-45 Score=320.58 Aligned_cols=202 Identities=32% Similarity=0.490 Sum_probs=165.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC
Q 025168 47 SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 47 ~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~ 126 (257)
..+++|++++||+|||+|++++|+++....... ....+++.+++++|+++++++++++++||+|+|||||+++++.|+
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 103 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcC
Confidence 446789999999999999999999865333221 224567889999999999999999999999999999999999999
Q ss_pred CcccchhhHHhhhhhHHHHHHHHHHhhcCCc-chhhcC---CCcccccC-CCCccchhHHHHHHHHHHHHHHHHhccccc
Q 025168 127 LSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK-NYERLG---GGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKR 201 (257)
Q Consensus 127 ~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~-~~~~~~---~~~~~~~~-~~s~~~~~~~E~~~T~~l~~~il~~~~~~~ 201 (257)
++|++++.||++|++||++|+++++.++++. .++..+ .+.....| ..+..++|+.|+++||+|+++++.+.|+++
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~ 183 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRV 183 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998543 122111 11112223 457788999999999999999999988654
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 202 NARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 202 ~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
. +.+.|+.||++++++.++.+++||++||||||||||++++ +..|+++|
T Consensus 184 ~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~W 232 (256)
T 3llq_A 184 P------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLW 232 (256)
T ss_dssp C------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTT
T ss_pred C------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCccccee
Confidence 2 2488999999999999999999999999999999999984 33566888
No 7
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=1.6e-44 Score=315.34 Aligned_cols=201 Identities=36% Similarity=0.519 Sum_probs=172.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHH
Q 025168 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (257)
Q Consensus 43 ~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~ 122 (257)
+|.++.+++|++++||+|||+|++++++++... .....+++.+++++|+++++.+++++++||+|+|||||++++
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-----~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~ 76 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFL 76 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHH
Confidence 356778899999999999999999999887532 112345677899999999999999999999999999999999
Q ss_pred HccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcccccc
Q 025168 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (257)
Q Consensus 123 ~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~ 202 (257)
+.|+++|.+++.||++|++||++|+.+++.+++++. . ...+...+.++.+..++|+.|+++||+|+++++.+.|+++.
T Consensus 77 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~-~-~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~ 154 (263)
T 2b6o_A 77 VGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-R-GNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRN 154 (263)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTT-C-SSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc-c-cccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999998652 2 12334445677788899999999999999999999886654
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
.. +.+.|+.||+++++..+.++++||++||||||||||++.+ +|++||
T Consensus 155 ~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~W 202 (263)
T 2b6o_A 155 GR----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHW 202 (263)
T ss_dssp SS----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCT
T ss_pred CC----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---Ccccee
Confidence 32 3478999999999999999999999999999999999986 899998
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-45 Score=318.76 Aligned_cols=201 Identities=37% Similarity=0.562 Sum_probs=172.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHH
Q 025168 43 GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (257)
Q Consensus 43 ~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~ 122 (257)
+|.++.+++|++++||+|||+|+|++++++.... . ...+.+.+++++|+++++.+++++++||||+|||||++++
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~--~---~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~ 78 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP--S---ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALL 78 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS--S---SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C---CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHH
Confidence 3556778899999999999999999999875311 1 1246778899999999999999999999999999999999
Q ss_pred HccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcccccc
Q 025168 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (257)
Q Consensus 123 ~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~ 202 (257)
+.|+++|.+++.||++|++||++|+++++.+++++ . ....+.+.+.++.+..++|+.|+++||+|+++|+.+.|+++.
T Consensus 79 ~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~-~-~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~ 156 (266)
T 3d9s_A 79 VGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLN-A-RGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRT 156 (266)
T ss_dssp HTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-H-HTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc-c-cCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999764 2 222333445566788899999999999999999999887664
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCC-CC
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDD-HV 257 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~-~w 257 (257)
.. +.+.|+.||+++.+..+.++++||++||||||||||++.+ +|++ ||
T Consensus 157 ~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~W 205 (266)
T 3d9s_A 157 SP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHW 205 (266)
T ss_dssp SC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHH
T ss_pred Cc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEe
Confidence 32 2478999999999999999999999999999999999985 8888 77
No 9
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=5.3e-44 Score=314.01 Aligned_cols=199 Identities=31% Similarity=0.452 Sum_probs=166.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh--ccccC--CCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHH
Q 025168 47 SWSFYRAGIAEFMATFLFLYITVLTVM--GVSKS--NTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLL 122 (257)
Q Consensus 47 ~~~~~r~~~aEf~gT~~lv~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~ 122 (257)
.++.+|++++||+|||+|+|++++++. +.... +......+++.+++++|+.+++++++++++||||+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 346789999999999999999988632 22111 11122345678899999999999999999999999999999999
Q ss_pred HccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHHHhcccccc
Q 025168 123 LARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (257)
Q Consensus 123 ~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~ 202 (257)
+.|+++|++++.||++|++||++|+++++.++++.. . ..+.+.++.+..++|+.|+++||+|+++|+.+.+++++
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~-~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI-A----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-C----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc-e----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999997762 1 12334456778899999999999999999998765543
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
. +.+.|+.||++++++.++++++||++||||||||||++++ ..|+++|
T Consensus 196 ~-----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~W 243 (279)
T 2w2e_A 196 A-----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHW 243 (279)
T ss_dssp T-----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTT
T ss_pred C-----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhh
Confidence 2 3489999999999999999999999999999999999985 2456788
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=2.7e-44 Score=309.21 Aligned_cols=199 Identities=29% Similarity=0.447 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcc
Q 025168 50 FYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSL 129 (257)
Q Consensus 50 ~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~ 129 (257)
++|++++||+|||+|+|++++++...... +....+.+.+++++|+.+++.+++++++||+|+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~--~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGF--PELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 57999999999999999999876432211 1123467888999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhhhHHHHHHHHHHhhcCCcc-hhhc-----CCCcccccC-CCCccchhHHHHHHHHHHHHHHHHhcccccc
Q 025168 130 TRAVFYMVMQCLGAVCGAGVVKGFEGSKN-YERL-----GGGANVVAH-GYTKGDGLGAEIIGTFVLVYTVFSATDAKRN 202 (257)
Q Consensus 130 ~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~-~~~~-----~~~~~~~~~-~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~ 202 (257)
++++.||++|++||++|+.+++.++++.. ++.. ..+.....| +.+..++|+.|+++||+|+++++.+.|+++.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 161 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999987531 2211 111222222 4677899999999999999999999885432
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhCCCCCCCCCC
Q 025168 203 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHV 257 (257)
Q Consensus 203 ~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~w~~~w 257 (257)
+.+.|+.||+++.++.+..+++||++||||||||||++++ +..|+++|
T Consensus 162 ------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~W 209 (234)
T 2o9g_A 162 ------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLW 209 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHH
T ss_pred ------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceee
Confidence 2489999999999999999999999999999999999984 33566887
No 11
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=8.6e-44 Score=308.42 Aligned_cols=204 Identities=29% Similarity=0.380 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCC--------cC-----CccchhHHHHHHHHHHHHHHHhhcCcCCcccC
Q 025168 49 SFYRAGIAEFMATFLFLYITVLTVMGVS-KSNT--------KC-----STVGIQGIAWAFGGMIFALVYCTAGISGGHIN 114 (257)
Q Consensus 49 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~-~~~~--------~~-----~~~~~~~~~l~~g~~v~~~i~~~~~isGah~N 114 (257)
+++|++++||+|||+|+|++++++.+.. .+++ .. ...+++.+++++|+.+++.+++++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 3689999999999999999998776543 1110 00 12234568999999999999999999999999
Q ss_pred hHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCCCcccccCCCCccchhHHHHHHHHHHHHHHH
Q 025168 115 PAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF 194 (257)
Q Consensus 115 PavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~il 194 (257)
||||+++++.|+++|++++.||++|++||++|+.+++.+++++.......+.+.+.++.+..++++.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999998742222222233344567888999999999999999999
Q ss_pred HhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHH--h-CCCCCCCCCC
Q 025168 195 SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII--F-NKDHAWDDHV 257 (257)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~--~-~~~~~w~~~w 257 (257)
...++++.. +.+.|+.+|+++.++.++.+++||++||||||||||++ . +++++|+|.|
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~ 223 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYS 223 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTT
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEE
Confidence 876544432 24789999999999999999999999999999999994 3 4578999888
No 12
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=1.3e-43 Score=312.59 Aligned_cols=193 Identities=28% Similarity=0.406 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCc
Q 025168 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLS 128 (257)
Q Consensus 49 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~ 128 (257)
+++|++++||+|||+|+|++++++.+...++. ..+.+.+++++|+.+++.+++++++||+|+|||||+++++.|+++
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 82 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFD 82 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCC
Confidence 46899999999999999999988765444321 234455899999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhc----------------CCCcccccCCCCccchhHHHHHHHHHHHHH
Q 025168 129 LTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERL----------------GGGANVVAHGYTKGDGLGAEIIGTFVLVYT 192 (257)
Q Consensus 129 ~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~~~~~~E~~~T~~l~~~ 192 (257)
|++++.||++|++||++|+++++.+++++..+.. ....+.+.++.+..++|+.|+++||+|+++
T Consensus 83 ~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~ 162 (281)
T 1ldf_A 83 KRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGL 162 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976521110 001122344567889999999999999999
Q ss_pred HHHhccccccCCCCCCCcchhHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHh
Q 025168 193 VFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF 247 (257)
Q Consensus 193 il~~~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~ 247 (257)
|+.+.|+++... .+.+.|+.||++++++.++.+++||++||||||||||+++
T Consensus 163 il~~~d~~~~~~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~ 214 (281)
T 1ldf_A 163 ILALTDDGNGVP---RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFA 214 (281)
T ss_dssp HHHHHCTTSSSC---CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHHHhccCCCCc---ccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHH
Confidence 999988766431 1358999999999999999999999999999999999997
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-43 Score=308.88 Aligned_cols=194 Identities=22% Similarity=0.306 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCC
Q 025168 48 WSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKL 127 (257)
Q Consensus 48 ~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~ 127 (257)
++++|++++||+|||+|+|++++++.+....+ ...+.+.+++++|+.+++.+++++++||+|+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 35689999999999999999998776543221 134677889999999999999999999999999999999999999
Q ss_pred cccchhhHHhhhhhHHHHHHHHHHhhcCCcchhhcCC----CcccccCCCCccchhHHHHHHHHHHHHHHHHhccccccC
Q 025168 128 SLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGG----GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNA 203 (257)
Q Consensus 128 ~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 203 (257)
+|++++.||++|++||++|+++++.+++++ ++.... +........+..++++.|+++||+|+++++.+.|+|++.
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~-~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~ 162 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLYHGF-ISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICG 162 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTHHH-HHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcchh-hhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 999999999999999999999999999765 332211 111122233445699999999999999999998876531
Q ss_pred CCCCCCcch-hHHHHHHHHHHHHHhcCCCcCccchhhhHHHHHHhC
Q 025168 204 RDSHVPILA-PLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFN 248 (257)
Q Consensus 204 ~~~~~~~~~-~~~ig~~v~~~~~~~~~~tG~~~NPAr~~gp~i~~~ 248 (257)
. .+.+. |+.||++++++.++.+++||++||||||||||++++
T Consensus 163 ~---~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~ 205 (258)
T 3c02_A 163 K---FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSL 205 (258)
T ss_dssp S---CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred c---ccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHh
Confidence 1 13478 999999999999999999999999999999999973
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.75 E-value=1.6e-18 Score=149.81 Aligned_cols=136 Identities=20% Similarity=0.166 Sum_probs=98.2
Q ss_pred cccchhhhhhhhhhcccccc--cCCC--CCCCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccc
Q 025168 12 ANKFSERQPIGTSAQSDKDY--KEPP--PAPLFEPGEL-KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVG 86 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~~~--~~~~--~~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~ 86 (257)
.-.|+.+|++|++.+....+ ..++ .......... ...+..+.++.|+++||+|+++++++....+. ..
T Consensus 100 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~------~~- 172 (246)
T 2f2b_A 100 VVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERA------PK- 172 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSTTS------CT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheeeEEecCCCC------CC-
Confidence 34699999999998443211 1100 0000111111 22356789999999999999998875431111 01
Q ss_pred hhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHH-----ccCCcccchhhHHhhhhhHHHHHHHHHHhhcC
Q 025168 87 IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLL-----ARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG 155 (257)
Q Consensus 87 ~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~-----~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~ 155 (257)
...++.+|+.++...+..+++||+|+|||||+++++ .++..|.+.|+||++|++|+++|+++++.+++
T Consensus 173 -~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 173 -GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 124789999999999999999999999999999999 34567889999999999999999999888764
No 15
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.63 E-value=3.9e-16 Score=136.83 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=98.7
Q ss_pred ccchhhhhhhhhhcccccccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHH
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAW 92 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (257)
-.|+++|++|++.+....+..-+.........-...+..+.++.|+++||+|++++++.... +.. .. ...++
T Consensus 131 ~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~--~~~----~~--~~~pl 202 (279)
T 2w2e_A 131 ILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVE--KHR----AT--WFAPF 202 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTS--CST----TG--GGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccC--CCC----Cc--CcHHH
Confidence 46999999999995442221111111111110012346788999999999999998875431 111 11 12478
Q ss_pred HHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 93 AFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 93 ~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.+|+.+++..+..++.||+.+|||+++++++....-+...|+||++|++|+++|+++++.+...+
T Consensus 203 ~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~ 267 (279)
T 2w2e_A 203 VIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267 (279)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccC
Confidence 89999999999999999999999999999998764456799999999999999999998886544
No 16
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.62 E-value=2.2e-15 Score=131.11 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=98.4
Q ss_pred ccchhhhhhhhhhcccccc--cCCCCCCCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDKDY--KEPPPAPLFEPGEL-KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
-.|+.+|++|++.+....+ ..+..........+ ...+..+.++.|+++||+|++++++.. ...+.. ..+ .
T Consensus 87 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~~---~~~--~ 159 (263)
T 2b6o_A 87 ICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY--DERRNG---RLG--S 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS--CTTSCS---SCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh--cccCCC---Ccc--c
Confidence 4699999999998443111 11110111111111 112457899999999999999988652 111111 111 2
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.++.+|+.+++..+..++.||+.+|||+++++.+..+ .|.++|+||++|++|+++|+++++.++.++
T Consensus 160 ~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 226 (263)
T 2b6o_A 160 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226 (263)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTTCTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-CccceeHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3678899999899999999999999999999999766 689999999999999999999999887654
No 17
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.61 E-value=6.1e-16 Score=132.59 Aligned_cols=136 Identities=14% Similarity=0.169 Sum_probs=98.2
Q ss_pred ccchhhhhhhhhhcccccc---cCCC---------CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 025168 13 NKFSERQPIGTSAQSDKDY---KEPP---------PAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNT 80 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~ 80 (257)
-.|+.+|++|+..+....+ .+.+ .............+..+.++.|+++||+|++++++... ++.
T Consensus 85 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d--~~~-- 160 (234)
T 2o9g_A 85 VGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KFA-- 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTS--TTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcC--CCC--
Confidence 4699999999998433111 0000 00001111112335688999999999999999876531 111
Q ss_pred cCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHcc-CCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 81 KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR-KLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 81 ~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g-~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
..+ ..++.+|+.++...+..++.||+.+|||+++++.+.. ...|.+.|+||++|++|+++|+++++.++.++
T Consensus 161 ---~~~--~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~~ 233 (234)
T 2o9g_A 161 ---PAG--FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233 (234)
T ss_dssp ---CTT--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ---ccc--hHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence 111 2478899999999999999999999999999999964 44577999999999999999999998887643
No 18
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.60 E-value=8.4e-16 Score=132.93 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=95.4
Q ss_pred ccchhhhhhhhhhcccccc---------cCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcC
Q 025168 13 NKFSERQPIGTSAQSDKDY---------KEPP-PAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKC 82 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~ 82 (257)
-.|+++|++|++.+....+ +.+. ...-.........+..+.++.|+++||+|++++++... ++.
T Consensus 110 ~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d--~~~---- 183 (256)
T 3llq_A 110 VPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTH--GRV---- 183 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHS--TTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CCC----
Confidence 4699999999998443111 1000 00000011112335788999999999999998876432 111
Q ss_pred CccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHc-cCCcccchhhHHhhhhhHHHHHHHHHHhhc
Q 025168 83 STVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLA-RKLSLTRAVFYMVMQCLGAVCGAGVVKGFE 154 (257)
Q Consensus 83 ~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~-g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~ 154 (257)
..+ ..++.+|+.++.+.+..++.||+.+|||+++++.+. +...|...|+||++|++|+++|+++++.+.
T Consensus 184 -~~~--~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 184 -PAG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred -Ccc--chhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 111 237889999999999999999999999999999985 444567899999999999999999998875
No 19
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.59 E-value=4.5e-15 Score=132.42 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=96.4
Q ss_pred ccchhhhhhhhhhcccccccCCCC--CCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPPP--APLFEPGE-LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
..|+++|++|++.+....+...+. ........ ....+..+.++.|+++||+|++++++.... .... ..+ .
T Consensus 133 ~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~--~~~~---~~~--~ 205 (340)
T 3iyz_A 133 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDD--KRTD---VTG--S 205 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcC--ccCC---ccc--c
Confidence 469999999999955422211110 00011111 112356789999999999999998765321 1110 011 1
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.++++|+.+.+.....++.||+.+|||+++++.+... .|.+.|+||++|++|+++|++++..++.+.
T Consensus 206 ~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~~WVywvgPiiGailaallY~~l~~p~ 272 (340)
T 3iyz_A 206 VALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCPD 272 (340)
T ss_pred hhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCcEeehhHHHHHHHHHHHHHHHHHhCCC
Confidence 3678888887777777789999999999999999765 589999999999999999999998887543
No 20
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.59 E-value=3.8e-15 Score=131.57 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=96.1
Q ss_pred cccchhhhhhhhhhcccccccCCCC--CCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchh
Q 025168 12 ANKFSERQPIGTSAQSDKDYKEPPP--APLFEPGE-LKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQ 88 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
.-.|+++|++|++.+....+..-+. ........ ....+..+.++.|+++||+|++++++... ..... ..+
T Consensus 93 ~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d--~~~~~---~~~-- 165 (301)
T 2zz9_A 93 SVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD--DKRTD---VTG-- 165 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSC--SSSSC---CSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcC--CCCCC---ccc--
Confidence 3469999999999944422211110 00011111 11234678999999999999999876431 11110 111
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCC
Q 025168 89 GIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGS 156 (257)
Q Consensus 89 ~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~ 156 (257)
..++++|+.+.+.....++.||+.+|||+++++.+... .|.+.|+||++|++|+++|+++++.++.+
T Consensus 166 ~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~~WVy~vgPiiGailaa~ly~~l~~~ 232 (301)
T 2zz9_A 166 SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 232 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTTTTHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcceeeeeeHHHHHHHHHHHHHHHHhCC
Confidence 13678888887777777789999999999999999865 69999999999999999999999888754
No 21
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=130.71 Aligned_cols=137 Identities=19% Similarity=0.153 Sum_probs=97.4
Q ss_pred ccchhhhhhhhhhcccccccCCCC--CCCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPPP--APLFEPGEL-KSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
-.|+++|++|+..+....+..-+. ......... ...+..+.++.|+++||+|++++++... .++.. ..+ .
T Consensus 89 ~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d--~~~~~---~~~--~ 161 (266)
T 3d9s_A 89 FFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTD--SRRTS---PVG--S 161 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHC--TTCCS---CCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhc--ccCCC---ccc--h
Confidence 469999999999844321110000 000111111 1234678899999999999999887531 11111 111 1
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccc-hhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTR-AVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~-~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.++.+|+.+.+.....+++||+.+|||+++++.+..+ .|.+ +|+||++|++|+++|+++++.++.++
T Consensus 162 ~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 229 (266)
T 3d9s_A 162 PALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCTTHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-CcccCEeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 4678888888888888899999999999999999765 6888 99999999999999999999887654
No 22
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=126.53 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=92.9
Q ss_pred ccchhhhhhhhhhcccccccCCC-----CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccch
Q 025168 13 NKFSERQPIGTSAQSDKDYKEPP-----PAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGI 87 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~ 87 (257)
-.|+.+|++|+..+....+..-+ ......+. ...+..+.++.|+++||+|++.++.... .+... ..+.
T Consensus 85 ~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~--~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~--~~~~~---~~~~ 157 (223)
T 3gd8_A 85 VFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH--GNLTAGHGLLVELIITFQLVFTIFASCD--SKRTD---VTGS 157 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCC--TTSCHHHHHHHHHHHHHHHHHHHHHHTC--TTCSC---CCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccceeeccCC--CccCHHHHHHHHHHHHHHHHHHHHHHhc--cccCC---ccCC
Confidence 46999999999984432110000 00001111 1124578899999999999999876432 11111 1111
Q ss_pred hHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcC
Q 025168 88 QGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG 155 (257)
Q Consensus 88 ~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~ 155 (257)
.++.+|+.+.+.....++.||+.+|||+++++.+... .|.+.|+||++|++|+++|+++++.++.
T Consensus 158 --~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~~Wvy~vgP~~Ga~la~~~y~~~~~ 222 (223)
T 3gd8_A 158 --IALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGGLYEYVFC 222 (223)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --ccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCcEEeehhHHHHHHHHHHHHHHHHcC
Confidence 3677887777666666688999999999999999765 6999999999999999999999887753
No 23
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.56 E-value=6.8e-15 Score=128.57 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=94.7
Q ss_pred ccchhhhhhhhhhccccccc--CCCCCCCCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhH
Q 025168 13 NKFSERQPIGTSAQSDKDYK--EPPPAPLFEPGELK-SWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQG 89 (257)
Q Consensus 13 ~~y~~~q~~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
-.|+++|++|++.+....+. .+.+.......... ..+..+.++.|+++||+|++++++... .++.. ..+ .
T Consensus 97 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d--~~~~~---~~~--~ 169 (271)
T 1j4n_A 97 IMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD--RRRRD---LGG--S 169 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC--SSCCC---CCS--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcc--ccCCC---ccc--c
Confidence 36999999999984432111 11011111111111 122356788999999999999876431 11111 111 2
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
.++.+|+.+++.....++.||+.+|||+++++.+... .|.+.|+||++|++|+++|+++++.++.++
T Consensus 170 ~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~ 236 (271)
T 1j4n_A 170 GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDHWIFWVGPFIGAALAVLIYDFILAPR 236 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTTTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCcceeHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3678888888777777789999999999999998765 688999999999999999999999887543
No 24
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.55 E-value=6.1e-15 Score=130.52 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=97.7
Q ss_pred cccchhhhhhhhhhccccc-------ccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCc
Q 025168 12 ANKFSERQPIGTSAQSDKD-------YKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCST 84 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~ 84 (257)
...|+++|++|++.+.... ++...... ... ....+..+.++.|+++||+|+++++... ..+..... .
T Consensus 142 ~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~-~~~--~~~~s~~~~f~~E~i~TfiLv~~Il~~~--d~~~~~~~-~ 215 (304)
T 3cn5_A 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGA-NSV--ALGYNKGTALGAEIIGTFVLVYTVFSAT--DPKRSARD-S 215 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTC-CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTE--EEEEESTT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc-ccc--CCCccHHHHHHHHHHHHHHHHHHHhhee--cCccCCCC-c
Confidence 3469999999999843311 11111000 000 1123467899999999999999988432 11111110 0
Q ss_pred cchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHc--cCCcccchhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 85 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLA--RKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 85 ~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~--g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
......++.+|+.+++..+..++.||+.+|||+++++++. +...|.+.|+||++|++|+++|+++++.++.++
T Consensus 216 ~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 216 HVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 0001137889999999999999999999999999999997 234688999999999999999999998887654
No 25
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.50 E-value=3e-14 Score=123.75 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=96.4
Q ss_pred cccchhhhhhhhhhcccc-------cccCCCCCCCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCC
Q 025168 12 ANKFSERQPIGTSAQSDK-------DYKEPPPAPLFEP-GELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCS 83 (257)
Q Consensus 12 ~~~y~~~q~~g~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~ 83 (257)
.-.|+.+|++|+..+... ..++......... ....+....+.++.|+++||+|++++++... .++..
T Consensus 88 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d--~~~~~--- 162 (258)
T 3c02_A 88 IPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVD--ENICG--- 162 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHC--HHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhC--cccCC---
Confidence 346999999999984331 1111110100000 1111223346899999999999999887542 11100
Q ss_pred ccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccC-----Ccc----cchhhHHhhhhhHHHHHHHHHHhhc
Q 025168 84 TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARK-----LSL----TRAVFYMVMQCLGAVCGAGVVKGFE 154 (257)
Q Consensus 84 ~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~-----~~~----~~~~~yi~aQ~~Ga~~ga~~~~~~~ 154 (257)
....+.+++.+|+.++...+..++.||+.+|||+++++.+... ..| .+.|+||++|++|+++|+++++.+.
T Consensus 163 ~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~ 242 (258)
T 3c02_A 163 KFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVI 242 (258)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHh
Confidence 0112223788999999999999999999999999999999642 244 4589999999999999999998887
Q ss_pred CCc
Q 025168 155 GSK 157 (257)
Q Consensus 155 ~~~ 157 (257)
.++
T Consensus 243 ~~~ 245 (258)
T 3c02_A 243 CPL 245 (258)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 26
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.49 E-value=1.8e-14 Score=126.57 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCCccchhHHHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHcc---
Q 025168 49 SFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR--- 125 (257)
Q Consensus 49 ~~~r~~~aEf~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g--- 125 (257)
+..+.++.|+++||+|++++++... .++.. ... ...++.+|+.++...+..++.||+.+|||+++++.+..
T Consensus 144 s~~~~~~~E~i~Tf~Lv~~il~~~d--~~~~~--~~~--~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~ 217 (281)
T 1ldf_A 144 NFVQAFAVEMVITAILMGLILALTD--DGNGV--PRG--PLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLA 217 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC--TTSSS--CCG--GGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc--cCCCC--ccc--chHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhc
Confidence 5688999999999999999887542 11110 001 12478899999999999999999999999999998853
Q ss_pred ---CCccc------chhhHHhhhhhHHHHHHHHHHhhcCCc
Q 025168 126 ---KLSLT------RAVFYMVMQCLGAVCGAGVVKGFEGSK 157 (257)
Q Consensus 126 ---~~~~~------~~~~yi~aQ~~Ga~~ga~~~~~~~~~~ 157 (257)
...|. ..|+||++|++|+++|+++++.++.++
T Consensus 218 g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 218 GWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp TTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred ccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCcc
Confidence 22232 699999999999999999999887544
No 27
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=50.22 E-value=2.3 Score=37.45 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred cCcCCcccChHHHHHHHHccC
Q 025168 106 AGISGGHINPAVTFGLLLARK 126 (257)
Q Consensus 106 ~~isGah~NPavTla~~~~g~ 126 (257)
++=||||++|+++++-.+..+
T Consensus 9 ~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 344899999999999999654
No 28
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=37.99 E-value=1.2e+02 Score=25.51 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhcC-CcchhhcCCC--c
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEG-SKNYERLGGG--A 166 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~~-~~~~~~~~~~--~ 166 (257)
-++.+++.+.+.++..+..-=+ |-.......+.++.+|.+.+--|.-=.+|=++|++++-.+.. ...++..... .
T Consensus 67 ~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~~~ 144 (268)
T 3tds_E 67 MGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFF 144 (268)
T ss_dssp HHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHHHH
Confidence 3455554554444433322111 433233455788889888877766666666666655544431 1111000000 0
Q ss_pred ccc---cCCCCccchhHHHHHHHHHHHHHHHHhc
Q 025168 167 NVV---AHGYTKGDGLGAEIIGTFVLVYTVFSAT 197 (257)
Q Consensus 167 ~~~---~~~~s~~~~~~~E~~~T~~l~~~il~~~ 197 (257)
..+ .-+.+..+.|+-=++|-++.++.++...
T Consensus 145 ~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~ 178 (268)
T 3tds_E 145 ANTAASKASMPFTALFFRGILCNILVCVSVLCSF 178 (268)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001 1134556778888888999888887644
No 29
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=31.48 E-value=2.4e+02 Score=23.87 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhcCcCCcccChHHHHHHHHccCCcccchhhHHhhhhhHHHHHHHHHHhhc--CCcchhhcCC--C
Q 025168 90 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFE--GSKNYERLGG--G 165 (257)
Q Consensus 90 ~~l~~g~~v~~~i~~~~~isGah~NPavTla~~~~g~~~~~~~~~yi~aQ~~Ga~~ga~~~~~~~--~~~~~~~~~~--~ 165 (257)
-++.+++.+.+.++..+..-=+ |--.+ ...+.++.+|.+.+--|.-=.+|=++|++++-.+. ... .....+ +
T Consensus 71 ~g~~F~vGL~lVvl~G~ELFTg--n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~-~~~~~~~~~ 146 (285)
T 3kcu_A 71 GGICFSLGLILCVVCGADLFTS--TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGE-YMTANGQWG 146 (285)
T ss_dssp HHHHHTHHHHHHHHHTCCCTTT--THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTG-GGTTTTHHH
T ss_pred HHHHHHHHHHHHHHhCcccccc--chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cccCchHHH
Confidence 3555555555555554443222 32223 33457888887776666555555555555444432 111 100000 0
Q ss_pred --cccc---cCCCCccchhHHHHHHHHHHHHHHHHhcc
Q 025168 166 --ANVV---AHGYTKGDGLGAEIIGTFVLVYTVFSATD 198 (257)
Q Consensus 166 --~~~~---~~~~s~~~~~~~E~~~T~~l~~~il~~~~ 198 (257)
...+ .-+.+..+.|+-=++|-++.++.++....
T Consensus 147 ~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ 184 (285)
T 3kcu_A 147 LNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYS 184 (285)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001 12345567888888899999988877543
Done!