BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025169
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
Vivax In Complex With Mt-Coformycin
Length = 371
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 85 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPNKEEIQSMLDFLP-QRIG 140
VG D G+ + + + RE G+ +++H GE +PN + S + L +RIG
Sbjct: 195 VGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIG 252
Query: 141 HACCFEE--EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDS 198
H E E +K I +E+C SN+ + S+D H LY A + + +DD
Sbjct: 253 HGIRVAESQELIDMVKEKNILLEVCPISNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDP 312
Query: 199 GVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 248
G+F T+++ +Y+ + + + ++ + A++ F + +K+ +K ++
Sbjct: 313 GMFLTNINDDYEELYTHLNFTLEDFMKMNEWALEKSFMDSNIKDKIKNLY 362
>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
Asp172) From Plasmodium Vivax In Complex With
Mt-Coformycin
Length = 370
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 85 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPNKEEIQSMLDFLP-QRIG 140
VG D G+ + + + RE G+ +++H GE +PN + S + L +RIG
Sbjct: 194 VGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIG 251
Query: 141 HACCFEE--EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDS 198
H E E +K I +E+C SN+ + S+D H LY A + + +DD
Sbjct: 252 HGIRVAESQELIDMVKEKNILLEVCPISNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDP 311
Query: 199 GVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 248
G+F T+++ +Y+ + + + ++ + A++ F + +K+ +K ++
Sbjct: 312 GMFLTNINDDYEELYTHLNFTLEDFMKMNEWALEKSFMDSNIKDKIKNLY 361
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 108 AREQGLQITLHCGE---IPNKEEIQSMLDFLP-QRIGHACCFEE--EEWRKLKSSKIPVE 161
R+ GL +T+H GE +PN + + ++ L +RIGH E E +K I +E
Sbjct: 229 VRDHGLHLTVHAGEDATLPNLNTLYTAINILNVERIGHGIRVSESDELIELVKKKDILLE 288
Query: 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRR 221
+C SN+ + S+D H LY A + + +DD G+F ++++ Y+ +
Sbjct: 289 VCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKLYIHLNFTLE 348
Query: 222 EMFQLAKSAVKFIFANGRVKEDLKEIF 248
E + A + F + VK +LK ++
Sbjct: 349 EFMIMNNWAFEKSFVSDDVKSELKALY 375
>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Adenosine
pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Pentostatin
pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Guanosine
Length = 371
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 85 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE---IPNKEEIQSMLDFLP-QRIG 140
VG D G+ + + + RE G+ +++H GE +PN + S + L +RIG
Sbjct: 203 VGFDHGGHEV--DLKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKVERIG 260
Query: 141 HACCFEE--EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDS 198
H E E +K I +E+C SN+ + S D H LY A + + +DD
Sbjct: 261 HGIRVAESQELIDXVKEKNILLEVCPISNVLLKNAKSXDTHPIRQLYDAGVKVSVNSDDP 320
Query: 199 GVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 248
G F T+++ +Y+ + + + + + A++ F + +K+ +K ++
Sbjct: 321 GXFLTNINDDYEELYTHLNFTLEDFXKXNEWALEKSFXDSNIKDKIKNLY 370
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G R + VR +L R + + ++ E V+L + R+ VV IDL+G+ T E ++ P
Sbjct: 140 GERDFGVKVRSILCCMRHQPSWSS-EVVELCKKYREQTVVAIDLAGDETI-EGSSLFPGH 197
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACCFEEEE--WRKLKSSKI 158
A A + G+ T+H GE+ + ++ +D L +R+GH E+ + +L+ +
Sbjct: 198 VQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLRQENM 257
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
EIC S+ T H + Q L TDD +F +++ +Y +
Sbjct: 258 HFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGF 317
Query: 219 GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253
E +L +A K F +++ KE+ DL K
Sbjct: 318 TEEEFKRLNINAAKSSFLP---EDEKKELLDLLYK 349
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G R + VR +L R + + ++ E V+L + R+ VV IDL+G+ T E ++ P
Sbjct: 139 GERDFGVKVRSILCCMRHQPSWSS-EVVELCKKYREQTVVAIDLAGDETI-EGSSLFPGH 196
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A A + G+ T+H GE+ + ++ +D L +R+GH E+ + +L+ +
Sbjct: 197 VQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLRQENM 256
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
EIC S+ T H + Q L TDD +F +++ +Y +
Sbjct: 257 HFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGF 316
Query: 219 GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253
E +L +A K F +++ KE+ DL K
Sbjct: 317 TEEEFKRLNINAAKSSFLP---EDEKKELLDLLYK 348
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G R + VR +L R + + ++ E V+L + R+ VV IDL+G+ T E ++ P
Sbjct: 140 GERDFGVKVRSILCCMRHQPSWSS-EVVELCKKYREQTVVAIDLAGDETI-EGSSLFPGH 197
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A A + G+ T+H GE+ + ++ +D L +R+GH E+ + +L+ +
Sbjct: 198 VQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLRQENM 257
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
EIC S+ T H + Q L TDD +F +++ +Y +
Sbjct: 258 HFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGF 317
Query: 219 GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253
E +L +A K F +++ KE+ DL K
Sbjct: 318 TEEEFKRLNINAAKSSFLP---EDEKKELLDLLYK 349
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G R + VR +L R + + ++ E V+L + R+ VV IDL+G+ T E ++ P
Sbjct: 139 GERDFGVKVRSILCCMRHQPSWSS-EVVELCKKYREQTVVAIDLAGDETI-EGSSLFPGH 196
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A A + G+ T+H GE+ + ++ +D L +R+GH E+ + +L+ +
Sbjct: 197 VQAYAEAVKSGVHRTVHAGEVGSANVVKEAVDTLKTERLGHGYHTLEDTTLYNRLRQENM 256
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
EIC S+ T H + Q L TDD +F +++ +Y +
Sbjct: 257 HFEICPWSSYLTGAWKPDTEHAVIRFKNDQVNYSLNTDDPLIFKSTLDTDYQMTKKDMGF 316
Query: 219 GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253
E +L +A K F +++ KE+ DL K
Sbjct: 317 TEEEFKRLNINAAKSSFLP---EDEKKELLDLLYK 348
>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
Length = 326
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 56 LLLSIDRRETTEAAMETVKLALEMRDLGV-VGIDLS--GNPTKGEWTTFLPALKFAREQG 112
L+LS R + E A +T+ AL RD + VG+D S G+P + F AR +G
Sbjct: 135 LILSFLRHLSEEQAQKTLDQALPFRDAFIAVGLDSSEVGHPP----SKFQRVFDRARSEG 190
Query: 113 LQITLHCGEIPNKEEIQSMLDFLP-QRIGHAC-CFEEEEW-RKLKSSKIPVEICLTSNIR 169
H GE E I LD L +RI H FE+E R+L +IP+ +C SN +
Sbjct: 191 FLTVAHAGEEGPPEYIWEALDLLKVERIDHGVRAFEDERLXRRLIDEQIPLTVCPLSNTK 250
Query: 170 TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKS 229
H +D + + + +DD F V+ + + + +LA++
Sbjct: 251 LCVFDDXSQHTILDXLERGVKVTVNSDDPAYFGGYVTENFHALQQSLGXTEEQARRLAQN 310
Query: 230 AV 231
++
Sbjct: 311 SL 312
>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
Length = 367
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 14/216 (6%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G R + R +L R + + + V+L + + VV IDL+G+ T ++ LP
Sbjct: 137 GERDFGVKARSILCCMRHQPNWSP-KVVELCKKYQQQTVVAIDLAGDETI-PGSSLLPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+GH E++ + +L+ +
Sbjct: 195 VQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGYHTLEDQALYNRLRQENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
EIC S+ T H + L Q L TDD +F +++ +Y +
Sbjct: 255 HFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDMGF 314
Query: 219 GRREMFQLAKSAVKFIFANGRVKEDLK-EIFDLAEK 253
E +L +A K F + ED K E+ DL K
Sbjct: 315 TEEEFKRLNINAAKSSF----LPEDEKRELLDLLYK 346
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 140 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 197
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+GH E+E + +L +
Sbjct: 198 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENM 257
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TDD +F +++ +Y +
Sbjct: 258 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGF 317
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 318 TEEEFKRLNINAAKSSF 334
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 137 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+GH E+E + +L +
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TDD +F +++ +Y +
Sbjct: 255 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGF 314
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 315 TEEEFKRLNINAAKSSF 331
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 19/205 (9%)
Query: 47 TRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR---DLGVVGIDLSGNPTKGE-WTTFL 102
T + I ++++ S R + E++++A+ +R V G DL G+ G +
Sbjct: 253 THPEFIGIKIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYK 312
Query: 103 PALKFAREQGLQIT--LHCGEIPNKEEI--QSMLDFL---PQRIGHACCFEEEEWRKLKS 155
AL + G+++ H GE + +++LD L RIGH + + S
Sbjct: 313 EALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYS 372
Query: 156 SK--IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAA 213
K IP+E+C SN + +S L H L HP+V+ +DD +F YD
Sbjct: 373 WKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAK-GLSYDFYE 431
Query: 214 SAFSLGR-----REMFQLAKSAVKF 233
+G R + QLA +++K+
Sbjct: 432 VFMGIGGMKADLRTLKQLAMNSIKY 456
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 137 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+GH E+E + +L +
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L T+D +F +++ +Y +
Sbjct: 255 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTEDPLIFKSTLDTDYQMTKKDMGF 314
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 315 TEEEFKRLNINAAKSSF 331
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 140 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 197
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H G++ + E ++ +D L +R+GH E+E + +L +
Sbjct: 198 VEAYEGAVKNGIHRTVHAGQVGSPEVVREAVDILKTERVGHGEHTIEDEALYNRLLKENM 257
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TDD +F +++ +Y +
Sbjct: 258 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGF 317
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 318 TEEEFKRLNINAAKSSF 334
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 137 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+GH E+E + +L +
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TD +F +++ +Y +
Sbjct: 255 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLIFKSTLDTDYQMTKKDMGF 314
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 315 TEEEFKRLNINAAKSSF 331
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 137 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+G E+E + +L +
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGEGYHTIEDEALYNRLLKENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TDD +F +++ +Y +
Sbjct: 255 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGF 314
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 315 TEEEFKRLNINAAKSSF 331
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL+G+ T E ++ P
Sbjct: 137 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLAGDETI-EGSSLFPGH 194
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP-QRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE+ + E ++ +D L +R+G E+E + +L +
Sbjct: 195 VEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGAGYHTIEDEALYNRLLKENM 254
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TDD +F +++ +Y +
Sbjct: 255 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQMTKKDMGF 314
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 315 TEEEFKRLNINAAKSSF 331
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 56 LLLSIDRRETTE-AAMETVKLALEMR-DLGVVGIDLS--GNPTKGEWTTFLPALKFAREQ 111
LL++ R+ +E +A+E + L M + +G+D + GNP + F + A E
Sbjct: 137 LLIAAFLRDMSEDSALEVLDQLLAMHAPIAGIGLDSAEVGNPP----SKFERLYQRAAEA 192
Query: 112 GLQITLHCGEIPNKEEIQSMLDFLP-QRIGHAC-CFEEEEW-RKLKSSKIPVEICLTSNI 168
GL+ H GE I LD L +RI H C E+ + ++L + ++P+ +C SN+
Sbjct: 193 GLRRIAHAGEEGPASYITEALDVLHVERIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNV 252
Query: 169 RTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAK 228
R + L H ++ + + +DD F V ++ E LA
Sbjct: 253 RLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGGYVDDNFEQLVKVLEFSVPEQATLAA 312
Query: 229 SAVKFIFAN 237
++++ FA+
Sbjct: 313 NSIRSSFAS 321
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 46 GTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-- 103
G + I VR +L R + + ++E ++L + VV +DL G+ T E ++ P
Sbjct: 141 GEQAFGIKVRSILCCMRHQPS-WSLEVLELCKKYNQKTVVAMDLIGDETI-EGSSLFPGH 198
Query: 104 --ALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACCFEEEE--WRKLKSSKI 158
A + A + G+ T+H GE + E ++ +D L +R+GH E+E + +L +
Sbjct: 199 VEAYEGAVKNGIHRTVHAGEFGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENM 258
Query: 159 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL 218
E+C S+ T H V + L TD F +++ +Y +
Sbjct: 259 HFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDAPLEFKSTLDTDYQMTKKDMGF 318
Query: 219 GRREMFQLAKSAVKFIF 235
E +L +A K F
Sbjct: 319 TEEEFKRLNINAAKSSF 335
>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
Length = 380
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 39 NMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR--DLGVVGIDLSGNPTKG 96
M DA R I RL+ SIDR + + A+ V R ++ +GID N
Sbjct: 140 GMRDAA---RDFGIGARLIPSIDREQDPDEAVAIVDWMKANRADEVAGIGIDYRENDRPP 196
Query: 97 EWTTFLPALKFAREQGLQITLHCGE--IPNKEEIQSMLDFL 135
E F A + AR G + T H GE +P + +++ +D L
Sbjct: 197 E--LFWKAYRDARAAGFRTTAHAGEFGMPWR-NVETAVDLL 234
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 63 RETTEAAMETVKLALEMRDLGVV----GIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 118
+ T + + LA ++ +G+ G+DL N G L LKF +
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 119 CGEIPNKEEIQ 129
CGEIP +Q
Sbjct: 281 CGEIPQGGNLQ 291
>pdb|3KSU|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Oenococcus Oeni Psu-1
pdb|3KSU|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Oenococcus Oeni Psu-1
Length = 262
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 109 REQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140
+QG ++ L+ ++ N+EE+ + DF + G
Sbjct: 59 EDQGAKVALYQSDLSNEEEVAKLFDFAEKEFG 90
>pdb|3H11|A Chain A, Zymogen Caspase-8:c-Flipl Protease Domain Complex
pdb|3H13|A Chain A, C-Flipl Protease-Like Domain
Length = 272
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 109 REQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICL 164
+EQ L+ L + P K+ IQ FLPQ I EE K+KS P+ ICL
Sbjct: 1 KEQRLKEQLGAQQEPVKKSIQESEAFLPQSI-------PEERYKMKSK--PLGICL 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,851,222
Number of Sequences: 62578
Number of extensions: 252748
Number of successful extensions: 705
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 27
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)