Query 025169
Match_columns 257
No_of_seqs 195 out of 1703
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01321 ADGF Adenosine deamina 100.0 2.3E-50 4.9E-55 364.6 25.0 235 16-250 83-343 (345)
2 PTZ00124 adenosine deaminase; 100.0 1.3E-49 2.8E-54 360.7 26.3 230 16-248 119-361 (362)
3 PF00962 A_deaminase: Adenosin 100.0 6.6E-50 1.4E-54 360.6 20.3 232 16-247 91-331 (331)
4 COG1816 Add Adenosine deaminas 100.0 3.1E-49 6.8E-54 352.4 23.2 241 16-256 98-345 (345)
5 cd00443 ADA_AMPD Adenosine/AMP 100.0 4.4E-48 9.4E-53 345.3 25.8 231 16-247 59-304 (305)
6 PRK09358 adenosine deaminase; 100.0 3.4E-47 7.3E-52 344.4 27.9 244 10-253 87-339 (340)
7 KOG1097 Adenine deaminase/aden 100.0 6.7E-47 1.5E-51 338.1 24.7 240 16-255 134-390 (399)
8 TIGR01431 adm_rel adenosine de 100.0 1.8E-46 4E-51 350.6 26.3 252 4-255 196-474 (479)
9 TIGR01430 aden_deam adenosine 100.0 3.7E-46 8E-51 335.5 26.9 238 11-248 79-324 (324)
10 cd01320 ADA Adenosine deaminas 100.0 7.9E-43 1.7E-47 313.9 27.0 239 10-248 79-325 (325)
11 cd01319 AMPD AMP deaminase (AM 99.9 4.3E-27 9.2E-32 219.3 14.8 133 113-248 327-464 (496)
12 PLN03055 AMP deaminase; Provis 99.9 2.4E-26 5.3E-31 216.8 13.6 132 113-247 417-553 (602)
13 TIGR01429 AMP_deaminase AMP de 99.9 4.6E-26 9.9E-31 215.6 15.0 137 108-247 431-575 (611)
14 PLN02768 AMP deaminase 99.9 2.2E-25 4.8E-30 213.8 12.8 132 113-247 650-786 (835)
15 PRK07213 chlorohydrolase; Prov 99.9 8.1E-24 1.8E-28 194.1 18.2 187 41-237 127-326 (375)
16 cd01312 Met_dep_hydrolase_D Me 99.9 3.6E-23 7.9E-28 190.1 20.0 191 43-237 101-336 (381)
17 TIGR03314 Se_ssnA putative sel 99.9 3.4E-23 7.3E-28 193.8 20.1 189 40-235 138-355 (441)
18 TIGR01224 hutI imidazoloneprop 99.9 8.7E-23 1.9E-27 186.9 20.7 218 11-238 102-335 (377)
19 cd01305 archeal_chlorohydrolas 99.9 3.1E-23 6.6E-28 181.4 16.2 177 38-232 78-262 (263)
20 PTZ00310 AMP deaminase; Provis 99.9 1.3E-23 2.8E-28 211.2 12.8 132 113-247 1110-1246(1453)
21 PRK07203 putative chlorohydrol 99.9 5E-22 1.1E-26 185.9 20.8 190 39-235 138-356 (442)
22 PRK09228 guanine deaminase; Pr 99.9 6.8E-22 1.5E-26 184.5 21.5 197 38-238 141-369 (433)
23 PRK15493 5-methylthioadenosine 99.9 3E-22 6.5E-27 187.1 18.6 192 42-237 134-355 (435)
24 PRK08418 chlorohydrolase; Prov 99.9 6.2E-22 1.3E-26 183.5 19.0 190 44-237 129-359 (408)
25 PRK06687 chlorohydrolase; Vali 99.9 8E-22 1.7E-26 183.2 18.7 194 41-238 132-355 (419)
26 PTZ00310 AMP deaminase; Provis 99.9 1.1E-22 2.4E-27 204.6 13.5 140 109-250 473-620 (1453)
27 cd01303 GDEase Guanine deamina 99.9 2E-21 4.3E-26 181.2 20.4 197 38-238 137-372 (429)
28 cd01296 Imidazolone-5PH Imidaz 99.9 1.1E-21 2.5E-26 179.1 18.2 153 82-238 176-331 (371)
29 PRK08393 N-ethylammeline chlor 99.9 1.5E-21 3.3E-26 181.7 18.5 193 41-237 124-347 (424)
30 cd01313 Met_dep_hydrolase_E Me 99.9 1.1E-20 2.5E-25 175.6 22.5 193 38-237 128-367 (418)
31 TIGR02967 guan_deamin guanine 99.9 8.5E-21 1.8E-25 175.3 20.0 195 40-238 118-344 (401)
32 PRK09230 cytosine deaminase; P 99.9 6.5E-21 1.4E-25 177.6 18.9 217 11-238 109-365 (426)
33 PRK12393 amidohydrolase; Provi 99.9 1.5E-20 3.2E-25 176.7 21.4 194 38-237 137-375 (457)
34 PRK09229 N-formimino-L-glutama 99.9 3E-20 6.5E-25 174.6 22.8 192 38-236 137-376 (456)
35 TIGR02022 hutF formiminoglutam 99.9 1.3E-20 2.8E-25 177.0 20.3 191 38-236 137-376 (455)
36 PRK06380 metal-dependent hydro 99.9 1.4E-20 3.1E-25 174.8 19.4 191 42-236 124-344 (418)
37 PRK08203 hydroxydechloroatrazi 99.9 7.6E-20 1.6E-24 171.5 21.9 196 38-237 135-371 (451)
38 PRK06038 N-ethylammeline chlor 99.9 2.5E-20 5.4E-25 173.9 18.2 192 42-237 126-348 (430)
39 COG0402 SsnA Cytosine deaminas 99.9 4.6E-20 1E-24 171.6 19.8 190 42-236 133-355 (421)
40 PRK09045 N-ethylammeline chlor 99.8 1.4E-19 3.1E-24 169.4 20.0 190 43-238 139-361 (443)
41 PRK08204 hypothetical protein; 99.8 1.9E-19 4E-24 168.7 20.3 196 39-238 131-363 (449)
42 cd01292 metallo-dependent_hydr 99.8 4.3E-18 9.3E-23 146.7 20.2 222 6-232 37-274 (275)
43 PRK06886 hypothetical protein; 99.8 4.4E-18 9.6E-23 153.0 19.3 143 95-237 158-328 (329)
44 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.8 6.9E-18 1.5E-22 155.6 19.5 191 42-237 128-352 (411)
45 PRK07228 N-ethylammeline chlor 99.8 1.6E-17 3.5E-22 155.5 20.7 193 42-238 129-358 (445)
46 cd01293 Bact_CD Bacterial cyto 99.8 2.4E-17 5.1E-22 151.3 18.1 168 67-236 158-357 (398)
47 PRK06151 N-ethylammeline chlor 99.8 3.1E-17 6.8E-22 155.4 17.2 192 40-238 142-385 (488)
48 PRK14085 imidazolonepropionase 99.7 1.8E-17 3.8E-22 152.5 13.7 140 94-237 202-344 (382)
49 PRK09356 imidazolonepropionase 99.7 3.4E-17 7.5E-22 151.4 14.3 152 84-238 207-361 (406)
50 KOG3968 Atrazine chlorohydrola 99.7 3.9E-17 8.5E-22 146.9 12.1 185 43-239 151-380 (439)
51 cd01299 Met_dep_hydrolase_A Me 99.7 2E-16 4.4E-21 142.9 16.3 169 65-238 118-315 (342)
52 PRK07572 cytosine deaminase; V 99.7 8.8E-16 1.9E-20 143.2 15.5 141 98-238 190-361 (426)
53 PRK07583 cytosine deaminase-li 99.6 4.2E-14 9.1E-19 132.4 14.8 142 97-238 210-381 (438)
54 PRK05985 cytosine deaminase; P 99.5 2.6E-13 5.6E-18 125.2 16.1 138 93-238 185-348 (391)
55 KOG1096 Adenosine monophosphat 99.5 1.9E-14 4.1E-19 135.3 6.7 131 113-246 587-722 (768)
56 COG1228 HutI Imidazolonepropio 99.5 2E-13 4.4E-18 126.2 12.8 144 88-238 209-357 (406)
57 cd01300 YtcJ_like YtcJ_like me 99.5 5.6E-13 1.2E-17 126.0 14.0 142 96-238 292-464 (479)
58 PRK06846 putative deaminase; V 99.4 2.3E-11 5E-16 113.0 16.3 143 70-222 178-342 (410)
59 PRK12394 putative metallo-depe 99.3 4.7E-10 1E-14 103.2 19.0 184 42-237 104-321 (379)
60 cd01306 PhnM PhnM is believed 99.1 1.5E-09 3.2E-14 97.8 14.6 134 96-238 160-294 (325)
61 cd01309 Met_dep_hydrolase_C Me 99.1 8E-10 1.7E-14 101.0 12.3 132 101-238 182-321 (359)
62 PF01979 Amidohydro_1: Amidohy 99.1 6.5E-10 1.4E-14 99.3 9.0 133 92-238 137-316 (333)
63 PRK15446 phosphonate metabolis 99.0 4.3E-09 9.3E-14 97.1 14.1 135 95-238 210-345 (383)
64 COG1574 Predicted metal-depend 99.0 9.1E-09 2E-13 98.0 13.1 139 96-238 318-488 (535)
65 PLN02942 dihydropyrimidinase 98.9 6.4E-08 1.4E-12 92.0 18.5 145 93-238 161-383 (486)
66 TIGR02033 D-hydantoinase D-hyd 98.9 3.8E-07 8.3E-12 85.6 20.0 144 93-238 157-379 (454)
67 cd01314 D-HYD D-hydantoinases 98.9 1.4E-07 3E-12 88.5 16.9 145 93-238 156-377 (447)
68 TIGR01975 isoAsp_dipep isoaspa 98.8 4.8E-08 1E-12 90.2 12.3 189 40-237 110-344 (389)
69 PRK10657 isoaspartyl dipeptida 98.8 1.9E-07 4E-12 86.0 14.8 194 40-238 110-344 (388)
70 TIGR02318 phosphono_phnM phosp 98.7 3.7E-07 8E-12 84.1 13.1 133 97-237 207-340 (376)
71 PF07969 Amidohydro_3: Amidohy 98.6 1.6E-07 3.4E-12 86.6 10.0 146 88-238 215-389 (404)
72 PRK09357 pyrC dihydroorotase; 98.6 2.2E-06 4.7E-11 80.0 17.3 197 35-238 99-365 (423)
73 PRK08323 phenylhydantoinase; V 98.6 1.1E-05 2.4E-10 76.0 20.2 144 93-237 154-376 (459)
74 TIGR00010 hydrolase, TatD fami 98.5 2.3E-05 4.9E-10 67.4 18.1 184 41-234 43-250 (252)
75 cd01307 Met_dep_hydrolase_B Me 98.3 5.6E-05 1.2E-09 68.4 17.2 147 82-237 129-297 (338)
76 cd00530 PTE Phosphotriesterase 98.3 7.1E-05 1.5E-09 66.2 17.5 134 99-232 136-291 (293)
77 cd01297 D-aminoacylase D-amino 98.3 5.1E-05 1.1E-09 70.7 17.1 163 66-237 163-355 (415)
78 PRK09237 dihydroorotase; Provi 98.3 4.3E-05 9.4E-10 70.2 16.3 146 82-237 148-316 (380)
79 cd01295 AdeC Adenine deaminase 98.3 4.7E-05 1E-09 71.2 16.8 191 33-236 49-254 (422)
80 cd01310 TatD_DNAse TatD like p 98.1 0.00036 7.8E-09 59.8 17.7 127 99-234 108-250 (251)
81 COG1099 Predicted metal-depend 98.1 0.0011 2.3E-08 56.1 19.0 213 5-236 16-253 (254)
82 TIGR01178 ade adenine deaminas 98.0 0.00032 6.9E-09 67.8 16.1 102 135-238 175-297 (552)
83 cd00854 NagA N-acetylglucosami 98.0 3.3E-05 7.2E-10 71.0 8.7 100 137-238 241-345 (374)
84 PRK09236 dihydroorotase; Revie 97.9 9.7E-05 2.1E-09 69.5 11.4 126 101-237 218-368 (444)
85 PRK13207 ureC urease subunit a 97.9 0.00012 2.6E-09 70.3 11.8 156 83-239 213-421 (568)
86 cd01317 DHOase_IIa Dihydroorot 97.9 6.9E-05 1.5E-09 68.9 9.7 131 99-238 172-326 (374)
87 PRK10812 putative DNAse; Provi 97.6 0.0015 3.3E-08 57.4 13.5 132 99-239 111-259 (265)
88 PRK07575 dihydroorotase; Provi 97.5 0.0005 1.1E-08 64.6 9.2 127 99-237 212-362 (438)
89 TIGR00857 pyrC_multi dihydroor 97.5 0.018 3.9E-07 53.7 18.9 197 35-238 85-352 (411)
90 PRK13309 ureC urease subunit a 97.4 0.0079 1.7E-07 58.1 16.2 194 37-239 179-425 (572)
91 TIGR01792 urease_alph urease, 97.4 0.0025 5.5E-08 61.4 12.7 188 41-239 178-420 (567)
92 PRK09875 putative hydrolase; P 97.4 0.019 4.2E-07 51.1 17.1 133 99-233 139-290 (292)
93 PRK06361 hypothetical protein; 97.3 0.0088 1.9E-07 50.5 14.0 183 40-232 12-206 (212)
94 COG3964 Predicted amidohydrola 97.3 0.0065 1.4E-07 53.8 13.3 155 71-238 142-321 (386)
95 PRK06189 allantoinase; Provisi 97.3 0.0021 4.4E-08 60.7 10.9 129 100-237 220-373 (451)
96 PRK13206 ureC urease subunit a 97.3 0.01 2.2E-07 57.3 15.3 156 82-238 218-425 (573)
97 cd01308 Isoaspartyl-dipeptidas 97.3 0.03 6.6E-07 51.4 18.2 199 37-238 105-343 (387)
98 PRK10425 DNase TatD; Provision 97.2 0.064 1.4E-06 46.9 17.8 126 99-233 108-255 (258)
99 PF13147 Amidohydro_4: Amidohy 97.2 0.00059 1.3E-08 58.9 4.9 61 178-238 226-290 (304)
100 PRK11449 putative deoxyribonuc 97.1 0.043 9.2E-07 48.0 16.1 126 99-234 114-256 (258)
101 cd01302 Cyclic_amidohydrolases 97.1 0.092 2E-06 47.6 18.6 137 96-238 112-288 (337)
102 TIGR03217 4OH_2_O_val_ald 4-hy 97.0 0.034 7.5E-07 50.4 15.4 182 38-228 114-312 (333)
103 PRK08392 hypothetical protein; 97.0 0.023 5E-07 48.2 13.1 88 130-225 111-211 (215)
104 cd01315 L-HYD_ALN L-Hydantoina 96.9 0.081 1.8E-06 49.6 17.3 143 96-238 159-374 (447)
105 cd00375 Urease_alpha Urease al 96.8 0.048 1E-06 52.6 14.9 192 38-238 176-420 (567)
106 PRK13985 ureB urease subunit b 96.8 0.058 1.3E-06 51.9 15.3 155 83-238 213-420 (568)
107 PF01026 TatD_DNase: TatD rela 96.8 0.021 4.7E-07 49.6 11.4 182 42-232 43-252 (255)
108 TIGR03178 allantoinase allanto 96.8 0.016 3.4E-07 54.5 11.1 130 99-237 216-370 (443)
109 TIGR03583 EF_0837 probable ami 96.6 0.13 2.9E-06 46.9 16.1 130 98-238 165-314 (365)
110 PRK08195 4-hyroxy-2-oxovalerat 96.5 0.062 1.3E-06 48.9 12.6 118 38-158 115-246 (337)
111 PRK08044 allantoinase; Provisi 96.3 0.026 5.6E-07 53.3 9.8 130 99-237 222-375 (449)
112 PRK13308 ureC urease subunit a 96.3 0.09 1.9E-06 50.8 12.8 191 37-238 175-421 (569)
113 PLN02303 urease 96.3 0.13 2.8E-06 51.7 14.2 192 37-239 444-690 (837)
114 PRK09061 D-glutamate deacylase 96.2 0.58 1.3E-05 45.0 18.1 100 66-166 165-286 (509)
115 TIGR01496 DHPS dihydropteroate 96.1 0.13 2.8E-06 45.0 12.2 98 65-166 21-127 (257)
116 COG0084 TatD Mg-dependent DNas 96.0 0.57 1.2E-05 40.9 15.8 124 99-232 112-252 (256)
117 PRK07945 hypothetical protein; 95.8 0.51 1.1E-05 42.9 15.1 86 135-226 221-322 (335)
118 PLN02795 allantoinase 95.6 0.69 1.5E-05 44.4 16.0 140 96-237 209-428 (505)
119 PRK07328 histidinol-phosphatas 95.5 0.24 5.2E-06 43.4 11.6 62 135-197 154-230 (269)
120 PRK00912 ribonuclease P protei 95.5 0.34 7.3E-06 41.6 12.1 176 39-226 17-205 (237)
121 PRK05588 histidinol-phosphatas 95.4 0.21 4.5E-06 43.4 10.8 72 147-219 169-242 (255)
122 PRK09195 gatY tagatose-bisphos 95.4 0.69 1.5E-05 41.1 13.9 188 65-253 27-248 (284)
123 PRK12857 fructose-1,6-bisphosp 95.3 1.2 2.5E-05 39.6 15.0 188 65-253 27-248 (284)
124 cd00947 TBP_aldolase_IIB Tagat 95.2 1.6 3.5E-05 38.6 15.7 189 65-254 22-243 (276)
125 cd07939 DRE_TIM_NifV Streptomy 94.8 0.69 1.5E-05 40.3 12.2 106 31-139 100-211 (259)
126 COG1001 AdeC Adenine deaminase 94.7 1 2.2E-05 43.6 13.8 187 39-238 123-324 (584)
127 PRK08609 hypothetical protein; 94.6 1.5 3.2E-05 42.8 15.2 200 17-226 329-556 (570)
128 PRK07627 dihydroorotase; Provi 94.5 4.2 9E-05 38.1 19.3 152 82-236 145-364 (425)
129 cd07948 DRE_TIM_HCS Saccharomy 94.5 1.1 2.3E-05 39.3 12.8 107 29-139 100-213 (262)
130 PRK02382 dihydroorotase; Provi 94.4 0.59 1.3E-05 44.0 11.7 139 97-237 159-361 (443)
131 PRK09059 dihydroorotase; Valid 94.3 3.9 8.4E-05 38.4 16.9 138 98-237 165-370 (429)
132 COG1735 Php Predicted metal-de 94.3 1.3 2.7E-05 39.6 12.5 111 83-197 135-258 (316)
133 cd07940 DRE_TIM_IPMS 2-isoprop 94.3 0.97 2.1E-05 39.6 12.0 123 32-157 105-245 (268)
134 PRK12737 gatY tagatose-bisphos 94.2 2.1 4.6E-05 38.0 14.0 188 65-253 27-248 (284)
135 PRK13404 dihydropyrimidinase; 94.2 0.71 1.5E-05 44.0 11.8 133 99-237 221-385 (477)
136 PRK06552 keto-hydroxyglutarate 94.2 1.3 2.9E-05 37.5 12.2 95 91-196 88-185 (213)
137 cd01294 DHOase Dihydroorotase 94.1 4.3 9.3E-05 36.6 16.3 140 98-238 112-299 (335)
138 TIGR01858 tag_bisphos_ald clas 94.1 3.1 6.8E-05 36.9 14.8 188 65-253 25-246 (282)
139 PF02126 PTE: Phosphotriestera 93.9 0.38 8.3E-06 43.2 8.7 187 45-233 72-306 (308)
140 COG0191 Fba Fructose/tagatose 93.8 4.3 9.3E-05 36.0 14.9 188 65-255 27-252 (286)
141 TIGR00167 cbbA ketose-bisphosp 93.7 4.8 0.0001 35.8 15.3 189 65-253 27-252 (288)
142 PF04909 Amidohydro_2: Amidohy 93.7 0.3 6.5E-06 41.9 7.5 167 66-234 83-271 (273)
143 PRK12738 kbaY tagatose-bisphos 93.6 4.5 9.7E-05 36.0 14.9 187 65-252 27-247 (286)
144 PRK05692 hydroxymethylglutaryl 93.6 2 4.2E-05 38.2 12.7 105 32-139 111-228 (287)
145 cd03174 DRE_TIM_metallolyase D 93.6 2.2 4.8E-05 36.8 12.9 121 34-157 108-246 (265)
146 cd07945 DRE_TIM_CMS Leptospira 93.5 1.5 3.2E-05 38.8 11.8 105 33-140 107-221 (280)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 93.4 2.1 4.6E-05 37.3 12.5 98 39-139 113-214 (263)
148 PRK11858 aksA trans-homoaconit 93.2 1.4 3E-05 40.7 11.5 120 17-139 89-217 (378)
149 cd07938 DRE_TIM_HMGL 3-hydroxy 93.2 3.6 7.9E-05 36.2 13.6 106 32-140 105-223 (274)
150 COG2159 Predicted metal-depend 93.1 6 0.00013 35.2 17.0 181 42-238 88-292 (293)
151 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.1 2.3 5E-05 37.5 12.2 97 40-139 120-221 (275)
152 PRK09060 dihydroorotase; Valid 92.9 8.2 0.00018 36.3 16.5 97 141-237 231-364 (444)
153 PRK07998 gatY putative fructos 92.7 6.8 0.00015 34.8 14.5 188 65-253 27-245 (283)
154 cd07944 DRE_TIM_HOA_like 4-hyd 92.6 2.4 5.2E-05 37.2 11.6 94 43-139 114-212 (266)
155 PLN02746 hydroxymethylglutaryl 92.6 2.5 5.4E-05 38.7 12.0 105 33-140 154-271 (347)
156 TIGR02660 nifV_homocitr homoci 92.5 1.8 3.8E-05 39.8 11.1 104 33-139 105-214 (365)
157 PRK12330 oxaloacetate decarbox 92.5 1.7 3.7E-05 41.7 11.2 118 38-158 124-257 (499)
158 PRK12331 oxaloacetate decarbox 92.2 3.5 7.5E-05 39.1 12.8 116 40-158 125-254 (448)
159 COG5016 Pyruvate/oxaloacetate 92.1 1.1 2.5E-05 41.4 9.1 100 40-142 127-231 (472)
160 PRK12581 oxaloacetate decarbox 92.0 2.4 5.2E-05 40.3 11.5 101 37-140 131-236 (468)
161 TIGR02090 LEU1_arch isopropylm 92.0 2.6 5.7E-05 38.7 11.6 104 33-139 104-213 (363)
162 PF00682 HMGL-like: HMGL-like 91.7 1.4 3E-05 37.6 9.0 106 32-140 99-211 (237)
163 PF01081 Aldolase: KDPG and KH 91.5 2.5 5.5E-05 35.4 9.9 95 91-196 80-178 (196)
164 PRK07114 keto-hydroxyglutarate 91.4 6.5 0.00014 33.6 12.5 97 91-196 91-190 (222)
165 cd01301 rDP_like renal dipepti 91.4 4.9 0.00011 36.1 12.4 128 99-231 154-307 (309)
166 PRK06801 hypothetical protein; 91.1 11 0.00023 33.6 15.4 184 65-252 27-248 (286)
167 PRK09248 putative hydrolase; V 91.1 1.3 2.8E-05 38.1 8.2 91 131-222 121-219 (246)
168 PRK08185 hypothetical protein; 91.1 11 0.00023 33.5 15.7 185 65-253 22-244 (283)
169 TIGR01182 eda Entner-Doudoroff 91.0 3.7 8E-05 34.6 10.6 90 96-196 85-178 (204)
170 COG0826 Collagenase and relate 91.0 2.1 4.5E-05 39.1 9.7 96 71-169 17-125 (347)
171 PRK14042 pyruvate carboxylase 90.9 3.3 7.1E-05 40.6 11.5 98 40-140 125-227 (596)
172 PRK15108 biotin synthase; Prov 90.8 3.1 6.6E-05 38.0 10.7 93 65-159 77-186 (345)
173 TIGR00284 dihydropteroate synt 90.8 9.3 0.0002 36.7 14.2 108 53-166 151-260 (499)
174 PRK06015 keto-hydroxyglutarate 90.7 4 8.7E-05 34.4 10.5 93 91-194 76-171 (201)
175 PRK10027 cryptic adenine deami 90.7 4.7 0.0001 39.5 12.4 144 82-238 178-331 (588)
176 PRK08610 fructose-bisphosphate 90.6 12 0.00026 33.3 15.3 189 65-253 27-249 (286)
177 PRK08417 dihydroorotase; Provi 89.9 4.5 9.9E-05 37.3 11.2 140 96-237 127-335 (386)
178 TIGR01108 oadA oxaloacetate de 89.8 4.7 0.0001 39.5 11.6 98 39-139 119-221 (582)
179 COG1387 HIS2 Histidinol phosph 89.7 8.3 0.00018 33.2 12.0 99 111-214 93-213 (237)
180 PRK09389 (R)-citramalate synth 89.7 5.6 0.00012 38.1 11.8 105 32-139 105-215 (488)
181 TIGR00856 pyrC_dimer dihydroor 89.7 8.9 0.00019 34.9 12.7 154 83-237 92-301 (341)
182 PRK07709 fructose-bisphosphate 89.7 14 0.00031 32.8 15.6 189 65-253 27-249 (285)
183 PF01116 F_bP_aldolase: Fructo 89.5 1.4 3E-05 39.2 7.1 189 65-254 26-252 (287)
184 cd01318 DHOase_IIb Dihydroorot 89.4 4.6 9.9E-05 37.0 10.7 58 181-238 233-308 (361)
185 PRK00915 2-isopropylmalate syn 89.3 6.6 0.00014 37.8 12.1 130 7-139 81-225 (513)
186 PF01244 Peptidase_M19: Membra 89.0 2.2 4.7E-05 38.5 8.1 129 100-233 161-317 (320)
187 COG1820 NagA N-acetylglucosami 89.0 19 0.00041 33.3 17.5 209 27-238 58-346 (380)
188 COG1831 Predicted metal-depend 88.9 15 0.00033 32.2 14.1 168 45-228 69-273 (285)
189 TIGR00221 nagA N-acetylglucosa 88.8 19 0.00042 33.2 17.9 36 203-238 314-350 (380)
190 PRK03892 ribonuclease P protei 88.5 7.4 0.00016 32.9 10.2 123 97-226 69-204 (216)
191 PRK05718 keto-hydroxyglutarate 88.5 7 0.00015 33.2 10.4 146 32-194 22-182 (212)
192 PRK14041 oxaloacetate decarbox 88.4 6.1 0.00013 37.6 11.0 116 40-158 124-253 (467)
193 PRK09282 pyruvate carboxylase 88.4 6.5 0.00014 38.6 11.5 98 40-140 125-227 (592)
194 PRK07369 dihydroorotase; Provi 88.3 22 0.00048 33.2 16.3 151 83-237 148-367 (418)
195 cd07941 DRE_TIM_LeuA3 Desulfob 88.1 9.4 0.0002 33.5 11.4 105 33-140 111-225 (273)
196 PRK14040 oxaloacetate decarbox 88.1 6.4 0.00014 38.7 11.2 99 38-139 124-227 (593)
197 PF03932 CutC: CutC family; I 88.1 5.9 0.00013 33.3 9.6 153 17-190 21-194 (201)
198 PRK07998 gatY putative fructos 88.0 6.3 0.00014 35.0 10.2 93 97-197 113-232 (283)
199 PRK07329 hypothetical protein; 87.9 1 2.2E-05 39.0 5.1 71 148-219 169-241 (246)
200 COG3454 Metal-dependent hydrol 87.5 7.8 0.00017 35.1 10.3 131 98-238 209-342 (377)
201 COG0800 Eda 2-keto-3-deoxy-6-p 86.9 12 0.00027 31.6 10.8 94 91-196 85-181 (211)
202 PRK08123 histidinol-phosphatas 86.7 0.87 1.9E-05 39.9 4.0 48 147-197 200-251 (270)
203 TIGR01856 hisJ_fam histidinol 86.5 0.99 2.2E-05 39.2 4.3 46 148-197 189-238 (253)
204 PLN03228 methylthioalkylmalate 86.4 6.5 0.00014 37.8 10.0 130 6-139 169-315 (503)
205 PRK06740 histidinol-phosphatas 86.2 1.7 3.7E-05 39.4 5.7 68 148-218 243-315 (331)
206 PRK11572 copper homeostasis pr 86.1 20 0.00043 31.2 11.9 143 30-191 32-194 (248)
207 COG2355 Zn-dependent dipeptida 86.1 17 0.00036 32.8 11.8 127 100-232 150-305 (313)
208 PRK12344 putative alpha-isopro 86.0 8.7 0.00019 37.2 10.7 104 33-139 118-230 (524)
209 TIGR00973 leuA_bact 2-isopropy 84.5 11 0.00024 36.1 10.7 133 4-139 75-222 (494)
210 PRK05451 dihydroorotase; Provi 84.3 32 0.00069 31.2 14.2 139 97-238 116-305 (345)
211 PF04551 GcpE: GcpE protein; 84.2 1.9 4E-05 39.3 4.9 143 22-169 98-277 (359)
212 PRK12999 pyruvate carboxylase; 84.1 13 0.00027 39.6 11.6 100 38-140 654-764 (1146)
213 PF13918 PLDc_3: PLD-like doma 83.8 3.1 6.8E-05 34.3 5.7 61 7-67 84-149 (177)
214 PRK06806 fructose-bisphosphate 83.8 9.7 0.00021 33.7 9.2 184 65-252 27-245 (281)
215 COG1038 PycA Pyruvate carboxyl 83.6 19 0.00041 36.6 11.7 98 133-239 78-202 (1149)
216 PRK00208 thiG thiazole synthas 83.5 23 0.00051 30.8 11.1 124 55-190 64-199 (250)
217 PLN02321 2-isopropylmalate syn 83.1 21 0.00046 35.3 12.1 132 4-139 168-316 (632)
218 TIGR03234 OH-pyruv-isom hydrox 82.2 31 0.00067 29.4 15.5 93 16-119 27-143 (254)
219 PRK07315 fructose-bisphosphate 82.0 37 0.00081 30.2 15.7 186 65-253 27-248 (293)
220 PRK06256 biotin synthase; Vali 81.9 19 0.00041 32.4 10.6 81 65-147 92-174 (336)
221 PF05913 DUF871: Bacterial pro 81.8 7.2 0.00016 35.8 7.9 99 65-166 12-120 (357)
222 PLN02599 dihydroorotase 81.6 43 0.00094 30.8 20.1 139 98-237 135-323 (364)
223 PRK05835 fructose-bisphosphate 81.1 13 0.00029 33.4 9.1 188 65-253 26-271 (307)
224 cd04728 ThiG Thiazole synthase 80.8 34 0.00074 29.7 11.1 124 55-190 64-199 (248)
225 PRK04165 acetyl-CoA decarbonyl 80.6 53 0.0012 31.2 14.7 129 47-189 85-226 (450)
226 PRK11449 putative deoxyribonuc 80.4 38 0.00083 29.4 13.1 139 42-196 23-181 (258)
227 TIGR03569 NeuB_NnaB N-acetylne 80.4 30 0.00065 31.4 11.3 39 96-137 73-111 (329)
228 COG0084 TatD Mg-dependent DNas 80.3 39 0.00086 29.5 12.1 140 41-197 20-180 (256)
229 TIGR01859 fruc_bis_ald_ fructo 80.2 42 0.00091 29.7 13.8 91 99-197 115-233 (282)
230 PRK11613 folP dihydropteroate 80.1 23 0.0005 31.4 10.2 62 101-165 78-141 (282)
231 PF01261 AP_endonuc_2: Xylose 80.1 19 0.00041 29.2 9.3 140 17-162 9-190 (213)
232 PRK07094 biotin synthase; Prov 79.6 32 0.0007 30.7 11.3 77 65-145 71-149 (323)
233 COG0119 LeuA Isopropylmalate/h 79.6 28 0.00061 32.6 11.1 104 32-139 108-220 (409)
234 PRK10812 putative DNAse; Provi 79.0 43 0.00094 29.2 11.6 134 42-194 24-177 (265)
235 TIGR01235 pyruv_carbox pyruvat 78.7 26 0.00056 37.3 11.6 97 40-140 654-762 (1143)
236 PRK08508 biotin synthase; Prov 78.5 38 0.00082 29.8 11.2 78 64-144 40-121 (279)
237 PRK14057 epimerase; Provisiona 78.3 46 0.00099 29.1 15.1 170 66-252 31-241 (254)
238 cd07942 DRE_TIM_LeuA Mycobacte 77.9 50 0.0011 29.3 12.6 135 5-140 79-239 (284)
239 TIGR00433 bioB biotin syntheta 77.4 32 0.00069 30.1 10.5 48 99-147 98-145 (296)
240 PRK09240 thiH thiamine biosynt 77.1 47 0.001 30.6 11.8 85 65-153 105-192 (371)
241 PRK10425 DNase TatD; Provision 76.9 50 0.0011 28.7 11.3 140 40-197 17-177 (258)
242 TIGR00970 leuA_yeast 2-isoprop 76.5 65 0.0014 31.5 13.0 136 4-140 103-267 (564)
243 TIGR00977 LeuA_rel 2-isopropyl 76.4 43 0.00093 32.5 11.7 104 33-139 114-227 (526)
244 KOG1706 Argininosuccinate synt 76.4 11 0.00023 33.9 6.9 68 99-166 98-178 (412)
245 KOG3020 TatD-related DNase [Re 76.4 31 0.00066 30.9 9.8 67 99-167 135-206 (296)
246 PRK13753 dihydropteroate synth 75.8 57 0.0012 28.9 12.4 61 99-163 60-125 (279)
247 PRK13209 L-xylulose 5-phosphat 75.7 35 0.00076 29.6 10.2 106 16-122 34-161 (283)
248 COG0804 UreC Urea amidohydrola 75.4 38 0.00083 31.8 10.3 114 37-159 175-295 (568)
249 PRK13404 dihydropyrimidinase; 75.1 78 0.0017 30.1 14.6 26 95-120 162-187 (477)
250 PLN02858 fructose-bisphosphate 74.4 43 0.00092 36.5 12.0 184 65-249 1123-1343(1378)
251 TIGR01521 FruBisAldo_II_B fruc 73.3 31 0.00067 31.6 9.3 97 65-162 25-139 (347)
252 PRK09196 fructose-1,6-bisphosp 73.2 30 0.00066 31.6 9.2 97 65-162 27-141 (347)
253 PRK07084 fructose-bisphosphate 73.2 27 0.00058 31.6 8.8 74 65-138 33-111 (321)
254 PRK07084 fructose-bisphosphate 72.7 38 0.00082 30.7 9.6 100 98-197 125-271 (321)
255 TIGR01859 fruc_bis_ald_ fructo 72.5 69 0.0015 28.3 15.9 187 65-253 25-246 (282)
256 PRK00369 pyrC dihydroorotase; 72.4 82 0.0018 29.2 14.9 131 103-238 145-319 (392)
257 TIGR03178 allantoinase allanto 72.3 18 0.00038 33.9 7.9 26 96-122 158-183 (443)
258 TIGR02351 thiH thiazole biosyn 71.9 56 0.0012 29.9 10.9 85 65-153 104-191 (366)
259 PRK11840 bifunctional sulfur c 71.5 75 0.0016 28.8 11.1 99 55-156 138-247 (326)
260 PRK13399 fructose-1,6-bisphosp 71.4 37 0.0008 31.1 9.3 188 65-253 27-293 (347)
261 PRK03739 2-isopropylmalate syn 71.2 80 0.0017 30.8 12.2 135 5-140 108-268 (552)
262 TIGR03586 PseI pseudaminic aci 71.0 68 0.0015 29.1 10.9 24 96-119 74-97 (327)
263 TIGR01520 FruBisAldo_II_A fruc 70.9 87 0.0019 28.8 12.4 189 65-253 36-303 (357)
264 PF01026 TatD_DNase: TatD rela 70.9 13 0.00029 32.1 6.2 139 43-196 19-179 (255)
265 PRK10076 pyruvate formate lyas 70.0 21 0.00046 30.2 7.1 65 64-128 19-83 (213)
266 PLN02389 biotin synthase 69.8 56 0.0012 30.2 10.4 61 98-159 152-228 (379)
267 PRK13210 putative L-xylulose 5 69.5 51 0.0011 28.4 9.8 112 4-120 19-154 (284)
268 PF03102 NeuB: NeuB family; I 67.1 25 0.00053 30.5 7.0 62 96-160 53-116 (241)
269 cd00423 Pterin_binding Pterin 66.9 71 0.0015 27.7 10.0 64 100-166 63-129 (258)
270 TIGR03278 methan_mark_10 putat 66.5 82 0.0018 29.5 10.8 74 64-139 54-132 (404)
271 PRK09197 fructose-bisphosphate 66.3 23 0.00049 32.5 6.9 189 65-253 30-295 (350)
272 PRK08610 fructose-bisphosphate 66.2 49 0.0011 29.4 8.8 78 65-145 157-236 (286)
273 cd00453 FTBP_aldolase_II Fruct 65.8 41 0.00089 30.6 8.4 189 65-253 22-288 (340)
274 TIGR00612 ispG_gcpE 1-hydroxy- 65.6 83 0.0018 28.7 10.1 138 22-169 97-268 (346)
275 cd00740 MeTr MeTr subgroup of 65.5 82 0.0018 27.3 10.0 66 98-166 55-128 (252)
276 cd00739 DHPS DHPS subgroup of 65.5 92 0.002 27.1 12.4 63 101-166 64-129 (257)
277 cd04946 GT1_AmsK_like This fam 65.3 1.1E+02 0.0025 28.1 13.2 92 100-199 247-344 (407)
278 PRK09140 2-dehydro-3-deoxy-6-p 64.0 87 0.0019 26.3 9.9 156 59-235 14-177 (206)
279 PRK11170 nagA N-acetylglucosam 64.0 1.2E+02 0.0026 28.0 19.8 36 203-238 311-347 (382)
280 cd07947 DRE_TIM_Re_CS Clostrid 63.5 1.1E+02 0.0023 27.1 12.3 123 16-139 87-232 (279)
281 TIGR00542 hxl6Piso_put hexulos 63.2 1E+02 0.0022 26.7 12.4 106 16-122 29-156 (279)
282 COG2100 Predicted Fe-S oxidore 63.2 1.2E+02 0.0027 27.7 12.1 45 65-111 142-187 (414)
283 PRK07315 fructose-bisphosphate 62.8 1.1E+02 0.0024 27.3 10.5 31 112-142 202-232 (293)
284 COG1456 CdhE CO dehydrogenase/ 62.4 1.1E+02 0.0024 28.3 10.2 121 59-190 102-232 (467)
285 COG3589 Uncharacterized conser 62.3 57 0.0012 29.8 8.4 98 65-165 14-121 (360)
286 TIGR01858 tag_bisphos_ald clas 62.3 57 0.0012 28.9 8.5 61 85-145 172-233 (282)
287 KOG2367 Alpha-isopropylmalate 62.2 92 0.002 29.8 10.0 133 5-141 133-282 (560)
288 cd00946 FBP_aldolase_IIA Class 62.2 59 0.0013 29.8 8.7 189 65-253 25-291 (345)
289 PRK07709 fructose-bisphosphate 62.0 70 0.0015 28.4 9.0 78 65-145 157-236 (285)
290 KOG1579 Homocysteine S-methylt 61.8 51 0.0011 29.7 8.1 111 44-156 180-311 (317)
291 COG1603 RPP1 RNase P/RNase MRP 61.8 1E+02 0.0023 26.4 11.7 125 97-227 62-201 (229)
292 PRK14847 hypothetical protein; 61.5 1.3E+02 0.0028 27.4 12.6 108 32-140 142-270 (333)
293 PRK15452 putative protease; Pr 61.4 1.2E+02 0.0025 28.8 10.9 120 40-171 48-185 (443)
294 TIGR01182 eda Entner-Doudoroff 61.4 99 0.0021 26.0 9.9 154 59-236 12-175 (204)
295 COG3142 CutC Uncharacterized p 61.0 1.1E+02 0.0024 26.4 10.4 96 69-168 75-180 (241)
296 PRK00366 ispG 4-hydroxy-3-meth 60.6 1E+02 0.0022 28.4 9.8 172 22-202 105-310 (360)
297 PRK09613 thiH thiamine biosynt 59.8 1.6E+02 0.0036 28.1 11.7 45 94-139 144-194 (469)
298 PRK13802 bifunctional indole-3 59.5 1.5E+02 0.0034 29.8 11.8 138 97-248 145-319 (695)
299 TIGR01975 isoAsp_dipep isoaspa 59.2 77 0.0017 29.4 9.2 91 65-160 169-278 (389)
300 cd03811 GT1_WabH_like This fam 59.0 85 0.0018 26.6 9.1 143 99-256 205-352 (353)
301 COG0076 GadB Glutamate decarbo 58.9 27 0.00059 33.2 6.3 71 45-120 172-245 (460)
302 COG1242 Predicted Fe-S oxidore 58.2 1.4E+02 0.003 26.7 11.9 88 64-160 97-184 (312)
303 cd01317 DHOase_IIa Dihydroorot 57.1 1.5E+02 0.0033 26.9 10.9 38 83-122 105-142 (374)
304 COG0800 Eda 2-keto-3-deoxy-6-p 57.0 1.1E+02 0.0024 25.9 8.9 96 59-165 17-112 (211)
305 PRK12737 gatY tagatose-bisphos 56.7 1.4E+02 0.0031 26.4 11.8 43 101-143 191-233 (284)
306 COG0502 BioB Biotin synthase a 56.4 1.1E+02 0.0023 28.0 9.3 98 65-166 85-199 (335)
307 TIGR03700 mena_SCO4494 putativ 56.2 91 0.002 28.3 9.1 53 65-119 80-132 (351)
308 TIGR01290 nifB nitrogenase cof 55.9 1.3E+02 0.0029 28.4 10.4 75 63-138 59-136 (442)
309 PRK08185 hypothetical protein; 55.2 1.5E+02 0.0033 26.3 12.0 21 138-158 201-222 (283)
310 TIGR00167 cbbA ketose-bisphosp 54.6 69 0.0015 28.5 7.8 61 85-145 177-239 (288)
311 cd01311 PDC_hydrolase 2-pyrone 54.6 1.4E+02 0.003 25.7 14.6 61 82-143 92-155 (263)
312 PRK12738 kbaY tagatose-bisphos 54.3 1E+02 0.0022 27.4 8.8 78 65-145 156-235 (286)
313 COG0107 HisF Imidazoleglycerol 53.8 1.2E+02 0.0026 26.3 8.6 84 71-156 31-119 (256)
314 COG0329 DapA Dihydrodipicolina 53.6 84 0.0018 28.0 8.2 73 66-138 24-102 (299)
315 PRK00507 deoxyribose-phosphate 53.6 1.4E+02 0.003 25.4 11.2 86 50-140 120-206 (221)
316 PF01212 Beta_elim_lyase: Beta 53.3 40 0.00086 29.9 6.1 70 50-119 91-165 (290)
317 PRK08091 ribulose-phosphate 3- 53.2 1.5E+02 0.0032 25.5 14.5 97 66-168 24-131 (228)
318 PRK14024 phosphoribosyl isomer 52.8 1.5E+02 0.0032 25.4 9.9 74 79-155 44-119 (241)
319 PF00834 Ribul_P_3_epim: Ribul 52.4 97 0.0021 25.9 8.0 96 69-168 14-118 (201)
320 PRK09195 gatY tagatose-bisphos 52.3 1.7E+02 0.0037 26.0 12.2 35 109-143 199-233 (284)
321 COG0134 TrpC Indole-3-glycerol 52.3 70 0.0015 28.0 7.2 41 97-140 141-181 (254)
322 PF00282 Pyridoxal_deC: Pyrido 51.8 48 0.001 30.5 6.6 77 44-120 155-232 (373)
323 PRK08445 hypothetical protein; 51.2 1.5E+02 0.0033 27.0 9.7 52 65-119 74-126 (348)
324 cd00947 TBP_aldolase_IIB Tagat 51.2 1.8E+02 0.0038 25.8 12.3 43 101-143 185-227 (276)
325 cd06283 PBP1_RegR_EndR_KdgR_li 50.7 1.3E+02 0.0029 24.9 8.9 66 98-163 15-84 (267)
326 PRK09875 putative hydrolase; P 50.1 1.9E+02 0.004 25.8 13.0 112 39-157 105-233 (292)
327 cd06270 PBP1_GalS_like Ligand 50.0 1.5E+02 0.0032 24.8 9.1 67 97-163 14-84 (268)
328 PLN02826 dihydroorotate dehydr 49.6 2.3E+02 0.0049 26.6 14.0 82 3-88 203-297 (409)
329 KOG4656 Copper chaperone for s 49.2 90 0.002 26.5 7.0 74 1-82 15-91 (247)
330 TIGR03471 HpnJ hopanoid biosyn 48.8 2.1E+02 0.0045 27.1 10.5 97 63-160 226-339 (472)
331 cd08213 RuBisCO_large_III Ribu 48.6 89 0.0019 29.4 7.8 73 41-120 187-259 (412)
332 PLN00200 argininosuccinate syn 48.3 44 0.00096 31.2 5.8 153 98-253 99-312 (404)
333 PF00809 Pterin_bind: Pterin b 48.3 1.6E+02 0.0035 24.6 10.6 63 101-166 59-125 (210)
334 TIGR03326 rubisco_III ribulose 47.9 98 0.0021 29.1 8.0 71 42-120 201-272 (412)
335 PRK09196 fructose-1,6-bisphosp 47.2 2.3E+02 0.005 26.0 14.4 99 99-197 123-280 (347)
336 PRK04208 rbcL ribulose bisopho 47.1 1.1E+02 0.0023 29.3 8.2 73 41-120 216-289 (468)
337 PRK15452 putative protease; Pr 46.8 2.4E+02 0.0051 26.8 10.4 24 95-118 42-65 (443)
338 TIGR00423 radical SAM domain p 46.7 2.1E+02 0.0045 25.4 10.1 20 148-171 149-168 (309)
339 PRK06015 keto-hydroxyglutarate 46.7 1.8E+02 0.0038 24.5 9.8 113 58-190 7-119 (201)
340 COG0826 Collagenase and relate 46.1 2.4E+02 0.0051 25.8 16.1 201 33-249 45-289 (347)
341 CHL00040 rbcL ribulose-1,5-bis 45.9 92 0.002 29.8 7.5 73 41-120 223-296 (475)
342 PRK12857 fructose-1,6-bisphosp 45.8 1.6E+02 0.0035 26.1 8.7 45 101-145 191-235 (284)
343 TIGR03128 RuMP_HxlA 3-hexulose 45.7 1.4E+02 0.0031 24.4 8.1 90 99-196 89-188 (206)
344 cd08207 RLP_NonPhot Ribulose b 45.4 1.2E+02 0.0027 28.3 8.2 69 41-120 199-268 (406)
345 COG0191 Fba Fructose/tagatose 45.3 1.1E+02 0.0025 27.2 7.5 56 84-139 174-231 (286)
346 cd03799 GT1_amsK_like This is 45.1 2E+02 0.0044 24.8 11.3 97 99-199 195-295 (355)
347 PRK05265 pyridoxine 5'-phospha 45.0 99 0.0021 26.8 6.9 41 98-140 112-152 (239)
348 PLN02858 fructose-bisphosphate 44.9 3.8E+02 0.0082 29.5 12.7 91 98-196 1209-1333(1378)
349 PF01876 RNase_P_p30: RNase P 44.8 13 0.00029 29.3 1.6 93 134-226 45-146 (150)
350 cd05560 Xcc1710_like Xcc1710_l 43.7 43 0.00093 25.1 4.1 45 124-168 41-90 (109)
351 TIGR00683 nanA N-acetylneurami 43.5 2.2E+02 0.0047 25.1 9.2 14 142-155 141-154 (290)
352 cd06273 PBP1_GntR_like_1 This 43.3 1.9E+02 0.0042 24.0 8.9 66 98-163 15-84 (268)
353 PRK06552 keto-hydroxyglutarate 41.8 2.1E+02 0.0046 24.1 9.8 156 59-235 17-181 (213)
354 PRK09856 fructoselysine 3-epim 41.7 2.2E+02 0.0049 24.3 14.0 101 16-119 26-149 (275)
355 TIGR02493 PFLA pyruvate format 41.6 66 0.0014 27.0 5.5 57 64-120 46-102 (235)
356 TIGR02313 HpaI-NOT-DapA 2,4-di 41.5 2.3E+02 0.0051 25.0 9.2 14 142-155 140-153 (294)
357 TIGR03699 mena_SCO4550 menaqui 41.4 1.6E+02 0.0036 26.4 8.3 53 64-119 72-125 (340)
358 cd01541 PBP1_AraR Ligand-bindi 41.4 1.9E+02 0.0041 24.3 8.4 66 98-163 15-89 (273)
359 PRK15427 colanic acid biosynth 41.3 2.9E+02 0.0062 25.4 13.8 97 99-199 238-338 (406)
360 PRK08005 epimerase; Validated 41.1 2.2E+02 0.0048 24.0 14.9 153 66-232 12-186 (210)
361 PRK05301 pyrroloquinoline quin 41.1 2.8E+02 0.0061 25.2 12.9 51 64-118 46-96 (378)
362 PRK09722 allulose-6-phosphate 41.0 2.3E+02 0.005 24.3 15.8 105 56-166 5-119 (229)
363 PRK14042 pyruvate carboxylase 40.8 3.7E+02 0.0081 26.6 17.8 182 33-226 59-266 (596)
364 PRK05370 argininosuccinate syn 40.7 3.3E+02 0.0071 25.9 12.0 64 100-163 110-186 (447)
365 PLN02590 probable tyrosine dec 40.6 1.4E+02 0.0031 29.0 8.1 77 44-120 243-325 (539)
366 COG1105 FruK Fructose-1-phosph 40.4 2.4E+02 0.0052 25.4 8.9 81 66-156 113-195 (310)
367 cd03820 GT1_amsD_like This fam 40.4 2.2E+02 0.0049 23.9 10.8 88 99-198 194-285 (348)
368 PRK06267 hypothetical protein; 40.1 2.1E+02 0.0045 26.1 8.8 114 97-216 151-290 (350)
369 TIGR03822 AblA_like_2 lysine-2 40.1 2.2E+02 0.0047 25.6 8.8 37 83-119 136-175 (321)
370 PRK14461 ribosomal RNA large s 40.0 3.1E+02 0.0066 25.5 9.7 160 32-193 133-346 (371)
371 KOG4013 Predicted Cu2+ homeost 39.9 1.4E+02 0.003 25.2 6.7 61 57-120 62-131 (255)
372 cd00248 Mth938-like Mth938-lik 39.9 59 0.0013 24.3 4.3 60 124-192 40-105 (109)
373 TIGR00559 pdxJ pyridoxine 5'-p 39.7 1.3E+02 0.0028 26.0 6.8 41 98-140 109-149 (237)
374 cd00952 CHBPH_aldolase Trans-o 39.6 2.4E+02 0.0052 25.1 9.0 11 144-154 150-160 (309)
375 COG0036 Rpe Pentose-5-phosphat 39.6 2.4E+02 0.0053 24.1 13.3 158 70-242 19-208 (220)
376 cd00950 DHDPS Dihydrodipicolin 39.6 1.8E+02 0.0039 25.3 8.1 81 30-114 13-97 (284)
377 cd03819 GT1_WavL_like This fam 39.3 2.6E+02 0.0055 24.3 9.8 45 146-199 254-298 (355)
378 TIGR02320 PEP_mutase phosphoen 39.2 2.8E+02 0.006 24.6 15.2 146 34-193 61-238 (285)
379 PF13407 Peripla_BP_4: Peripla 39.0 1.7E+02 0.0036 24.4 7.6 66 43-117 20-85 (257)
380 cd01335 Radical_SAM Radical SA 38.6 1.9E+02 0.0041 22.5 9.4 115 85-214 46-166 (204)
381 PRK05718 keto-hydroxyglutarate 38.5 2.4E+02 0.0053 23.8 9.7 150 59-230 19-176 (212)
382 cd08206 RuBisCO_large_I_II_III 38.3 1.5E+02 0.0033 27.9 7.6 71 43-120 190-261 (414)
383 COG0635 HemN Coproporphyrinoge 38.2 2.3E+02 0.005 26.5 8.9 66 45-112 141-217 (416)
384 PRK13585 1-(5-phosphoribosyl)- 38.2 2.4E+02 0.0053 23.7 9.2 73 82-156 47-121 (241)
385 COG4770 Acetyl/propionyl-CoA c 38.1 3.8E+02 0.0083 26.4 10.2 99 133-239 72-196 (645)
386 cd06279 PBP1_LacI_like_3 Ligan 37.9 2.2E+02 0.0047 24.2 8.3 64 99-163 21-85 (283)
387 PRK07535 methyltetrahydrofolat 37.8 2.7E+02 0.006 24.2 9.5 65 98-165 54-124 (261)
388 cd03812 GT1_CapH_like This fam 37.8 1.7E+02 0.0037 25.5 7.7 89 99-199 208-300 (358)
389 cd00003 PNPsynthase Pyridoxine 37.7 1.5E+02 0.0032 25.6 6.8 41 98-140 109-149 (234)
390 cd00959 DeoC 2-deoxyribose-5-p 37.6 2.4E+02 0.0051 23.4 10.5 14 99-112 131-144 (203)
391 PRK04527 argininosuccinate syn 37.4 3.5E+02 0.0076 25.3 10.2 153 98-254 95-309 (400)
392 cd00408 DHDPS-like Dihydrodipi 37.1 2.3E+02 0.005 24.5 8.4 79 30-114 10-94 (281)
393 COG1180 PflA Pyruvate-formate 36.5 1.3E+02 0.0029 26.1 6.6 79 84-163 84-178 (260)
394 PF01116 F_bP_aldolase: Fructo 36.4 1.4E+02 0.0031 26.4 6.9 78 65-145 156-238 (287)
395 PRK14456 ribosomal RNA large s 36.2 3E+02 0.0064 25.4 9.1 86 33-118 258-348 (368)
396 COG1242 Predicted Fe-S oxidore 36.0 3.2E+02 0.007 24.5 8.8 49 97-145 166-222 (312)
397 PRK06801 hypothetical protein; 36.0 3.1E+02 0.0068 24.3 11.9 23 137-159 205-228 (286)
398 TIGR02495 NrdG2 anaerobic ribo 35.9 2.3E+02 0.005 22.8 10.5 113 64-195 47-160 (191)
399 PF01081 Aldolase: KDPG and KH 35.6 2.6E+02 0.0057 23.3 8.4 45 115-160 60-104 (196)
400 cd08209 RLP_DK-MTP-1-P-enolase 35.5 1.9E+02 0.0041 27.0 7.7 70 42-120 181-251 (391)
401 PF05690 ThiG: Thiazole biosyn 35.5 3E+02 0.0065 23.9 11.3 150 54-214 63-225 (247)
402 TIGR00126 deoC deoxyribose-pho 35.4 2.7E+02 0.0059 23.5 9.6 31 51-82 117-147 (211)
403 PF07287 DUF1446: Protein of u 35.4 2.9E+02 0.0062 25.5 8.8 95 99-195 58-167 (362)
404 TIGR03799 NOD_PanD_pyr putativ 35.2 2.1E+02 0.0046 27.6 8.4 78 45-122 224-305 (522)
405 cd08208 RLP_Photo Ribulose bis 35.1 2.4E+02 0.0052 26.7 8.4 69 41-120 216-285 (424)
406 PRK13397 3-deoxy-7-phosphohept 35.1 3.1E+02 0.0066 23.9 12.0 62 57-120 21-87 (250)
407 PRK07114 keto-hydroxyglutarate 35.0 2.9E+02 0.0062 23.6 9.8 116 59-190 19-134 (222)
408 COG1243 ELP3 Histone acetyltra 34.9 2.3E+02 0.0049 27.2 8.1 77 40-119 170-254 (515)
409 cd06309 PBP1_YtfQ_like Peripla 34.9 2E+02 0.0044 24.1 7.5 65 99-163 16-86 (273)
410 cd06305 PBP1_methylthioribose_ 34.7 2.3E+02 0.0051 23.6 7.9 64 99-163 16-86 (273)
411 KOG0369 Pyruvate carboxylase [ 34.6 1.5E+02 0.0031 30.0 6.9 31 183-217 154-184 (1176)
412 PLN02880 tyrosine decarboxylas 34.5 1.8E+02 0.004 27.8 7.8 76 45-120 196-277 (490)
413 TIGR00674 dapA dihydrodipicoli 34.5 2.6E+02 0.0057 24.4 8.3 50 30-79 11-63 (285)
414 cd01542 PBP1_TreR_like Ligand- 34.4 2.6E+02 0.0057 23.0 8.5 64 99-163 16-84 (259)
415 cd01999 Argininosuccinate_Synt 34.4 3.8E+02 0.0083 24.9 12.8 154 98-254 92-306 (385)
416 PRK12331 oxaloacetate decarbox 34.3 4.1E+02 0.009 25.2 18.6 199 16-226 39-266 (448)
417 cd00953 KDG_aldolase KDG (2-ke 34.1 3.1E+02 0.0066 24.0 8.6 71 37-113 19-92 (279)
418 cd08212 RuBisCO_large_I Ribulo 33.7 2.2E+02 0.0047 27.1 7.9 72 42-120 202-273 (450)
419 PRK15062 hydrogenase isoenzyme 33.7 2.1E+02 0.0045 26.4 7.5 91 70-163 119-218 (364)
420 PRK02048 4-hydroxy-3-methylbut 33.5 1E+02 0.0022 30.4 5.8 124 19-144 104-266 (611)
421 PF00977 His_biosynth: Histidi 33.4 3E+02 0.0064 23.3 9.8 151 78-231 40-214 (229)
422 COG1850 RbcL Ribulose 1,5-bisp 33.3 3.6E+02 0.0078 25.3 8.9 105 2-120 169-282 (429)
423 PF00356 LacI: Bacterial regul 32.8 95 0.002 19.4 3.8 38 210-250 3-40 (46)
424 cd00377 ICL_PEPM Members of th 32.8 2.7E+02 0.0058 23.9 7.9 70 70-145 160-229 (243)
425 PRK08599 coproporphyrinogen II 32.7 3.8E+02 0.0083 24.4 11.0 71 84-154 52-130 (377)
426 COG2873 MET17 O-acetylhomoseri 32.7 2.2E+02 0.0049 26.5 7.5 82 48-141 123-204 (426)
427 PRK08745 ribulose-phosphate 3- 32.7 3.1E+02 0.0068 23.3 16.1 95 67-166 16-121 (223)
428 TIGR02852 spore_dpaB dipicolin 32.6 76 0.0017 26.3 4.3 72 138-213 95-170 (187)
429 PRK13745 anaerobic sulfatase-m 32.4 3.8E+02 0.0083 24.8 9.4 46 64-109 48-94 (412)
430 PRK06294 coproporphyrinogen II 32.4 3.9E+02 0.0085 24.4 9.6 23 97-119 137-160 (370)
431 PRK03170 dihydrodipicolinate s 32.3 2.9E+02 0.0062 24.2 8.2 50 30-79 14-66 (292)
432 PLN02417 dihydrodipicolinate s 32.0 3.5E+02 0.0075 23.6 9.4 17 181-197 167-183 (280)
433 PRK05835 fructose-bisphosphate 31.9 3.3E+02 0.0072 24.5 8.5 91 65-159 156-250 (307)
434 TIGR02109 PQQ_syn_pqqE coenzym 31.8 2E+02 0.0044 25.8 7.4 52 64-119 37-88 (358)
435 TIGR02494 PFLE_PFLC glycyl-rad 31.5 1.1E+02 0.0024 26.7 5.5 55 65-119 107-161 (295)
436 PRK15447 putative protease; Pr 31.5 2.8E+02 0.0061 24.6 8.0 22 96-117 45-66 (301)
437 PRK11145 pflA pyruvate formate 31.5 91 0.002 26.5 4.8 34 86-119 73-106 (246)
438 COG2040 MHT1 Homocysteine/sele 31.4 1.2E+02 0.0025 27.2 5.3 108 42-155 164-294 (300)
439 PRK14459 ribosomal RNA large s 31.4 4.1E+02 0.0089 24.6 9.2 85 34-119 262-355 (373)
440 PLN02428 lipoic acid synthase 31.2 4.2E+02 0.0091 24.3 9.5 77 38-117 235-319 (349)
441 PF00016 RuBisCO_large: Ribulo 31.1 1.6E+02 0.0034 26.6 6.3 74 41-120 70-143 (309)
442 smart00148 PLCXc Phospholipase 31.1 1.6E+02 0.0035 22.8 5.7 18 9-26 33-51 (135)
443 PRK10076 pyruvate formate lyas 31.1 3.2E+02 0.007 23.0 8.2 64 52-117 132-211 (213)
444 PRK08136 glycosyl transferase 30.8 1.3E+02 0.0029 27.1 5.8 106 1-122 1-119 (317)
445 cd06285 PBP1_LacI_like_7 Ligan 30.8 3.1E+02 0.0068 22.7 8.9 65 99-163 16-84 (265)
446 cd03465 URO-D_like The URO-D _ 30.8 3.7E+02 0.0081 23.6 13.8 110 101-213 210-325 (330)
447 cd06322 PBP1_ABC_sugar_binding 30.8 2.4E+02 0.0053 23.4 7.3 65 99-163 16-86 (267)
448 cd06281 PBP1_LacI_like_5 Ligan 30.5 3.2E+02 0.007 22.8 8.8 66 98-163 15-85 (269)
449 PRK06252 methylcobalamin:coenz 30.5 2.3E+02 0.0049 25.3 7.4 18 95-112 320-337 (339)
450 PF01791 DeoC: DeoC/LacD famil 30.4 2.2E+02 0.0047 24.1 6.9 96 40-140 114-226 (236)
451 TIGR00075 hypD hydrogenase exp 30.2 2.5E+02 0.0055 25.9 7.4 91 70-163 125-224 (369)
452 cd04911 ACT_AKiii-YclM-BS_1 AC 30.0 45 0.00097 23.5 2.1 22 147-168 19-40 (76)
453 TIGR03128 RuMP_HxlA 3-hexulose 29.8 3.1E+02 0.0067 22.4 11.2 111 113-232 55-181 (206)
454 PRK14464 ribosomal RNA large s 29.4 3.1E+02 0.0068 25.0 8.0 86 34-119 223-313 (344)
455 cd00166 SAM Sterile alpha moti 29.3 1.5E+02 0.0033 18.7 5.4 44 207-250 17-61 (63)
456 cd03794 GT1_wbuB_like This fam 29.3 3.6E+02 0.0079 23.0 12.1 92 99-199 236-333 (394)
457 COG2039 Pcp Pyrrolidone-carbox 29.2 53 0.0012 27.5 2.7 126 24-165 8-136 (207)
458 PF04748 Polysacc_deac_2: Dive 29.2 1.5E+02 0.0032 25.1 5.5 95 5-115 106-205 (213)
459 COG3528 Uncharacterized protei 29.1 52 0.0011 29.2 2.8 39 151-197 186-224 (330)
460 cd06278 PBP1_LacI_like_2 Ligan 29.1 3.3E+02 0.0071 22.4 8.9 101 99-199 16-126 (266)
461 TIGR02026 BchE magnesium-proto 29.1 5.1E+02 0.011 24.7 10.1 96 62-160 220-339 (497)
462 PRK11320 prpB 2-methylisocitra 28.9 4.2E+02 0.0091 23.6 13.6 148 34-193 61-232 (292)
463 TIGR03332 salvage_mtnW 2,3-dik 28.8 2.6E+02 0.0056 26.2 7.5 71 41-120 195-266 (407)
464 cd08210 RLP_RrRLP Ribulose bis 28.7 4.7E+02 0.01 24.1 11.8 64 45-118 185-249 (364)
465 PRK05660 HemN family oxidoredu 28.7 4.6E+02 0.01 24.0 11.3 71 84-154 59-137 (378)
466 cd06274 PBP1_FruR Ligand bindi 28.6 3.4E+02 0.0074 22.5 8.5 65 99-163 16-84 (264)
467 cd00003 PNPsynthase Pyridoxine 28.6 2.4E+02 0.0051 24.4 6.6 106 29-145 98-216 (234)
468 PRK12595 bifunctional 3-deoxy- 28.5 3.9E+02 0.0085 24.5 8.6 25 97-121 167-191 (360)
469 TIGR00559 pdxJ pyridoxine 5'-p 28.5 3.1E+02 0.0068 23.7 7.3 106 28-144 97-216 (237)
470 COG4130 Predicted sugar epimer 28.4 3.9E+02 0.0084 23.1 10.4 66 16-85 30-101 (272)
471 TIGR01036 pyrD_sub2 dihydrooro 28.1 4.5E+02 0.0098 23.7 11.8 82 3-88 153-245 (335)
472 cd04951 GT1_WbdM_like This fam 27.8 4E+02 0.0086 23.0 9.8 43 147-199 254-296 (360)
473 cd06306 PBP1_TorT-like TorT-li 27.7 3.5E+02 0.0075 22.7 7.8 65 99-163 16-87 (268)
474 cd08148 RuBisCO_large Ribulose 27.7 2.8E+02 0.006 25.7 7.4 72 40-120 182-254 (366)
475 PLN02828 formyltetrahydrofolat 27.6 2.8E+02 0.006 24.4 7.1 83 103-193 114-201 (268)
476 PRK09549 mtnW 2,3-diketo-5-met 27.6 3.3E+02 0.0071 25.6 7.9 71 41-120 190-261 (407)
477 cd00019 AP2Ec AP endonuclease 27.6 3.9E+02 0.0085 22.9 8.4 21 99-119 123-143 (279)
478 cd06308 PBP1_sensor_kinase_lik 27.5 3.5E+02 0.0075 22.6 7.8 64 99-163 16-87 (270)
479 PRK10307 putative glycosyl tra 27.1 4.7E+02 0.01 23.6 13.1 73 119-199 265-341 (412)
480 TIGR03821 AblA_like_1 lysine-2 27.0 66 0.0014 29.0 3.2 108 145-253 191-301 (321)
481 KOG3076 5'-phosphoribosylglyci 26.7 3.3E+02 0.0072 22.8 6.9 88 100-195 46-143 (206)
482 TIGR00010 hydrolase, TatD fami 26.7 3.7E+02 0.0081 22.3 11.2 52 134-195 120-174 (252)
483 PF03740 PdxJ: Pyridoxal phosp 26.4 3.9E+02 0.0084 23.2 7.6 41 98-140 110-150 (239)
484 PLN02925 4-hydroxy-3-methylbut 26.4 1.6E+02 0.0035 29.7 5.8 125 19-145 173-336 (733)
485 PRK14466 ribosomal RNA large s 26.2 4.9E+02 0.011 23.8 8.7 85 35-119 232-321 (345)
486 COG0325 Predicted enzyme with 26.2 3.7E+02 0.0081 23.1 7.4 108 28-143 97-222 (228)
487 PF13378 MR_MLE_C: Enolase C-t 26.1 72 0.0016 23.4 2.8 37 83-122 20-56 (111)
488 cd01575 PBP1_GntR Ligand-bindi 26.1 3.7E+02 0.0081 22.1 8.9 65 99-163 16-84 (268)
489 TIGR01520 FruBisAldo_II_A fruc 26.1 5.2E+02 0.011 23.8 9.2 48 98-145 236-290 (357)
490 cd04726 KGPDC_HPS 3-Keto-L-gul 26.0 3.5E+02 0.0077 21.8 10.1 86 99-196 90-188 (202)
491 PRK13820 argininosuccinate syn 25.9 1.8E+02 0.004 27.1 6.0 152 98-253 95-305 (394)
492 COG1856 Uncharacterized homolo 25.8 4.4E+02 0.0096 22.9 11.6 94 45-140 143-250 (275)
493 PF04055 Radical_SAM: Radical 25.8 2.9E+02 0.0062 20.7 6.8 108 65-190 29-142 (166)
494 cd03798 GT1_wlbH_like This fam 25.7 4.1E+02 0.0089 22.4 8.8 90 99-198 218-311 (377)
495 TIGR03551 F420_cofH 7,8-dideme 24.8 4.9E+02 0.011 23.4 8.5 53 64-119 70-123 (343)
496 TIGR03811 tyr_de_CO2_Ent tyros 24.7 3.5E+02 0.0075 26.9 7.9 73 45-119 237-318 (608)
497 PF08187 Tetradecapep: Myoacti 24.7 19 0.00041 16.5 -0.4 8 136-143 7-14 (14)
498 PLN02866 phospholipase D 24.7 1.3E+02 0.0028 31.7 5.1 56 2-57 341-402 (1068)
499 cd06272 PBP1_hexuronate_repres 24.6 4E+02 0.0087 22.0 8.3 64 99-163 16-80 (261)
500 PRK14455 ribosomal RNA large s 24.5 5.5E+02 0.012 23.5 9.2 86 34-119 243-333 (356)
No 1
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=2.3e-50 Score=364.61 Aligned_cols=235 Identities=21% Similarity=0.302 Sum_probs=213.0
Q ss_pred ccceeeeeccCcc---ccccCCCchhhhhhHh---h-cccCC--CcEEEEEEEeeCCCCHHHHHHHHHHHHhhC---CCc
Q 025169 16 AVSAVDVDFASRS---IDVRRPVNTKNMNDAC---N-GTRGK--KIYVRLLLSIDRRETTEAAMETVKLALEMR---DLG 83 (257)
Q Consensus 16 ~v~y~E~r~~p~~---~~~~~~~~~~~~~~~~---~-a~~~~--gir~~li~~~~r~~~~e~~~~~~~~~~~~~---~~~ 83 (257)
||+|+|+||+|.. ++.+|++.+++++++. + +.+.. ||.+++|+|++|+.+++.+.+.++.+.+++ .+.
T Consensus 83 gV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~ 162 (345)
T cd01321 83 NVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDF 162 (345)
T ss_pred CCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCe
Confidence 6999999999954 4458899999887766 2 22233 899999999999999999999999998874 235
Q ss_pred eEEEeccCCCC-CCChhcHHHHHHHHHHcC--CceeeecCCCCC-----HhhHHHHHhcCCcEEeecccc--cHHHHHHH
Q 025169 84 VVGIDLSGNPT-KGEWTTFLPALKFAREQG--LQITLHCGEIPN-----KEEIQSMLDFLPQRIGHACCF--EEEEWRKL 153 (257)
Q Consensus 84 vvg~~l~g~~~-~~~~~~~~~~~~~A~~~g--l~v~~Ha~E~~~-----~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l 153 (257)
|+|+|++|+|. ..++..|.++|+.||+.| +++|+||||..+ +.++++++.+|++|||||+.+ +|++++++
T Consensus 163 VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l 242 (345)
T cd01321 163 IAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLV 242 (345)
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHH
Confidence 99999999984 668899999999999999 999999999974 457888998999999999998 69999999
Q ss_pred hcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCC-ChHHHHHHHHHhCC---CCHHHHHHHHHH
Q 025169 154 KSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFST-SVSREYDLAASAFS---LGRREMFQLAKS 229 (257)
Q Consensus 154 ~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~-~l~~E~~~a~~~~~---ls~~~v~~~~~n 229 (257)
++++|++++||+||..++.++++..||++.|+++||+|+||||||+.|++ ++++||+.+...+| ++.+++.++++|
T Consensus 243 ~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~g~~~l~~~~l~~l~~n 322 (345)
T cd01321 243 KKKNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGLAPADAGLRGLKQLAEN 322 (345)
T ss_pred HHcCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999 999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHH
Q 025169 230 AVKFIFANGRVKEDLKEIFDL 250 (257)
Q Consensus 230 ~~~~~~~~~~~k~~l~~~~~~ 250 (257)
|+++||+++++|++|+++|++
T Consensus 323 si~~sF~~~~~K~~l~~~~~~ 343 (345)
T cd01321 323 SIRYSALSDQEKDEAVAKWEK 343 (345)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999864
No 2
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=1.3e-49 Score=360.70 Aligned_cols=230 Identities=21% Similarity=0.340 Sum_probs=209.7
Q ss_pred ccceeeeeccCccc-cccCCCchhhhhhHhh----ccc--CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEe
Q 025169 16 AVSAVDVDFASRSI-DVRRPVNTKNMNDACN----GTR--GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGID 88 (257)
Q Consensus 16 ~v~y~E~r~~p~~~-~~~~~~~~~~~~~~~~----a~~--~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~ 88 (257)
||.|+|+||+|..+ +.+|++.+++++++++ +.+ ++||.+++|+|++|+.+++.+.+.++++.+|++. ++|+|
T Consensus 119 gV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~-vvGiD 197 (362)
T PTZ00124 119 GVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD-FVGFD 197 (362)
T ss_pred CCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCCCHHHHHHHHHHHHhccCC-eEEEe
Confidence 79999999999654 5689999999887763 445 6899999999999999999999999999998775 99999
Q ss_pred ccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCH---hhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcEEe
Q 025169 89 LSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK---EEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 89 l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~---~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~ 162 (257)
++|+|... ..|.++|+.||+.|+++|+||||..++ .++.+++. +|++|||||+.+ +|++++++++++|++++
T Consensus 198 LaG~E~~~--~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~~d~~l~~~l~~~~I~lEv 275 (362)
T PTZ00124 198 HAGHEVDL--KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVAESQELIDMVKEKDILLEV 275 (362)
T ss_pred ccCCCCCc--HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccCCCHHHHHHHHHcCCeEEE
Confidence 99988753 569999999999999999999997432 35566664 899999999998 79999999999999999
Q ss_pred cccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHH
Q 025169 163 CLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKE 242 (257)
Q Consensus 163 cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~ 242 (257)
||+||+.++.++++..||++.|+++|+||+||||||+.|++++++||..+...+|++.+++.++++||++++|+++++|+
T Consensus 276 CPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~~~gls~~~l~~l~~nai~asF~~~~~K~ 355 (362)
T PTZ00124 276 CPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDYEELYTHLNFTLADFMKMNEWALEKSFLDKDIKL 355 (362)
T ss_pred CCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCCChhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 025169 243 DLKEIF 248 (257)
Q Consensus 243 ~l~~~~ 248 (257)
+|++++
T Consensus 356 ~l~~~~ 361 (362)
T PTZ00124 356 KIKKLY 361 (362)
T ss_pred HHHHhh
Confidence 999875
No 3
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=6.6e-50 Score=360.56 Aligned_cols=232 Identities=33% Similarity=0.471 Sum_probs=204.6
Q ss_pred ccceeeeeccCccccccC--CCchhhhhhHh----hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEec
Q 025169 16 AVSAVDVDFASRSIDVRR--PVNTKNMNDAC----NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDL 89 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~~--~~~~~~~~~~~----~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l 89 (257)
||+|+|+||+|..+...+ .+..++++++. ++.+++|+.++++.+..|..+.+.+.+.++++.+|++..++|+|+
T Consensus 91 nV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~~~~~~~~~~~~~~~~~~~~~vvG~dl 170 (331)
T PF00962_consen 91 NVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRHFPDEWAEEIVELASKYPDKGVVGFDL 170 (331)
T ss_dssp TEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTSTHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccccccccccccccccccchHHHHHHHHHHHhhcccceEEEEEe
Confidence 699999999999888877 77888887765 566778999999999999878888899999999999878999999
Q ss_pred cCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcEEecccc
Q 025169 90 SGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 90 ~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~S 166 (257)
+|+|...++..|..+++.|+++|+++++||||..++..+++++. +|++|||||+.+ +|++++++++++|++++||+|
T Consensus 171 ~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptS 250 (331)
T PF00962_consen 171 AGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGADRIGHGVRLIKDPELLELLAERQIPIEVCPTS 250 (331)
T ss_dssp ESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHH
T ss_pred cCCcccCchHHHHHHHhhhcccceeecceecccCCcccccchhhhccceeecchhhhhhhhHHHHHHHHhCCCeeeCCCc
Confidence 99999999999999999999999999999999999988988887 499999999988 688999999999999999999
Q ss_pred cceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 025169 167 NIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE 246 (257)
Q Consensus 167 N~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~ 246 (257)
|..++.++++..||+++|+++||+|+||||||++|++++++||..++..+|+|.+|+.++++||+++||+++++|++|++
T Consensus 251 N~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~~~~l~~ey~~~~~~~~l~~~~l~~l~~nsi~~sf~~~~~K~~ll~ 330 (331)
T PF00962_consen 251 NVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVFGTTLSDEYYLAAEAFGLSLADLKQLARNSIEASFLSEEEKAELLA 330 (331)
T ss_dssp HHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHHT-SHHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHHH
T ss_pred CcccceeeecchhHHHHHHHcCCceeccCCCccccCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 025169 247 I 247 (257)
Q Consensus 247 ~ 247 (257)
+
T Consensus 331 ~ 331 (331)
T PF00962_consen 331 K 331 (331)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.1e-49 Score=352.43 Aligned_cols=241 Identities=29% Similarity=0.395 Sum_probs=229.4
Q ss_pred ccceeeeeccCccccccCCCchhhhhhHh----hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccC
Q 025169 16 AVSAVDVDFASRSIDVRRPVNTKNMNDAC----NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSG 91 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~~~~~~~~~~~~~----~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g 91 (257)
|+.|+|+||+|+.|+.+|++.+++++.+. ++.+++||..++|+|+.|+.+++.+.+.++.+.+++.+.++|+|+.|
T Consensus 98 ~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~~~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~ 177 (345)
T COG1816 98 NVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPAERDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAG 177 (345)
T ss_pred CCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHHhhccCCccceEEEEEeecCHHHHHHHHHHHhhcccccCccCCCCc
Confidence 79999999999999999999999887655 57899999999999999999999999999999999887677999999
Q ss_pred CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcEEecccccc
Q 025169 92 NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 92 ~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
++...++..|..+++.+|++|+++|+||||..+++.+++++. ++++||+||+.+ +++++.++++++|++++||+||+
T Consensus 178 ~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~rI~HGi~~~~d~~L~~~l~~~qI~levCP~SNi 257 (345)
T COG1816 178 SESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAERIGHGIRAIEDPELLYRLAERQIPLEVCPLSNI 257 (345)
T ss_pred ccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhhhccccccccCHHHHHHHHHhCCeeEECCcchh
Confidence 999999999999999999999999999999999999999997 699999999987 78999999999999999999999
Q ss_pred eeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 025169 169 RTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 248 (257)
Q Consensus 169 ~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~ 248 (257)
+++.++++..|||++|+++||+|+||||||+.|++++..||..++..++|+..|+.++++||+++||+++++|..|++++
T Consensus 258 ~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~l~~Ey~~aa~~~~l~~~dl~~~arnav~~af~~~~~K~~ll~~~ 337 (345)
T COG1816 258 QLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQIYGLSREDLCELARNAVEAAFISEEEKAALLGKV 337 (345)
T ss_pred hcccccchhhCcHHHHHHcCCceEEcCCChhhcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 025169 249 DLAEKKLD 256 (257)
Q Consensus 249 ~~~~~~~~ 256 (257)
.+..++++
T Consensus 338 ~~~~~~~~ 345 (345)
T COG1816 338 LKTSIAHN 345 (345)
T ss_pred HhhHHhcC
Confidence 98777653
No 5
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=4.4e-48 Score=345.28 Aligned_cols=231 Identities=36% Similarity=0.544 Sum_probs=214.1
Q ss_pred ccceeeeeccCcccccc-CCCchhhhhhHh----hcccCCC-cEEEEEEEeeCCCCHH----HHHHHHHHHHhhCCCceE
Q 025169 16 AVSAVDVDFASRSIDVR-RPVNTKNMNDAC----NGTRGKK-IYVRLLLSIDRRETTE----AAMETVKLALEMRDLGVV 85 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~-~~~~~~~~~~~~----~a~~~~g-ir~~li~~~~r~~~~e----~~~~~~~~~~~~~~~~vv 85 (257)
||+|+|+||+|+.+... |++..++++.++ ++.+++| |++++|+|++|+.+++ .+.+.++++.++.+ .++
T Consensus 59 ~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~lI~~~~R~~~~~~~~~~~~~~~~l~~~~~~-~vv 137 (305)
T cd00443 59 NVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQWFPPIKVRLILSVDRRGPYVQNYLVASEILELAKFLSN-YVV 137 (305)
T ss_pred CCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHHHcCCeeEeEEEEEeCCCChhhhhhhHHHHHHHHHHhcC-CEE
Confidence 69999999999988877 999988877655 4566777 9999999999999888 88999999988866 599
Q ss_pred EEeccCCCCCC--ChhcHHHHHHHHHHcC-CceeeecCCCCCHhhHHHHHhcCCcEEeeccccc--HHHHHHHhcCCCcE
Q 025169 86 GIDLSGNPTKG--EWTTFLPALKFAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE--EEEWRKLKSSKIPV 160 (257)
Q Consensus 86 g~~l~g~~~~~--~~~~~~~~~~~A~~~g-l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~--~~~~~~l~~~~i~v 160 (257)
|+|++|+|... ++..|.++++.|++.| +++++|+||+.++..+.+++..+++|||||+++. |++++++++++|++
T Consensus 138 G~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~~~RIgHg~~~~~~p~~~~~l~~~~i~i 217 (305)
T cd00443 138 GIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLLPDRIGHGIFLLKHPELIYLVKLRNIPI 217 (305)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhccceeeceEecCCCHHHHHHHHHcCCEE
Confidence 99999998877 8899999999999999 9999999999888888888886799999999994 59999999999999
Q ss_pred EecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHH
Q 025169 161 EICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRV 240 (257)
Q Consensus 161 ~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~ 240 (257)
++||+||+.++..+++..||+++|+++|++|+||||||+++++++++||..++..++++.+++.++++||+++||+++++
T Consensus 218 e~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~l~~nsi~~sf~~~~~ 297 (305)
T cd00443 218 EVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYSLAAKTFGLTFEDLCELNRNSVLSSFAKDEE 297 (305)
T ss_pred EECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025169 241 KEDLKEI 247 (257)
Q Consensus 241 k~~l~~~ 247 (257)
|++|++.
T Consensus 298 K~~l~~~ 304 (305)
T cd00443 298 KKSLLEV 304 (305)
T ss_pred HHHHHhc
Confidence 9999864
No 6
>PRK09358 adenosine deaminase; Provisional
Probab=100.00 E-value=3.4e-47 Score=344.39 Aligned_cols=244 Identities=30% Similarity=0.388 Sum_probs=218.1
Q ss_pred HHHHhh-ccceeeeeccCccccccCCCchhhhhhHh----hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHh-hCCCc
Q 025169 10 VVEGLR-AVSAVDVDFASRSIDVRRPVNTKNMNDAC----NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE-MRDLG 83 (257)
Q Consensus 10 ~~~~~~-~v~y~E~r~~p~~~~~~~~~~~~~~~~~~----~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~-~~~~~ 83 (257)
+.+.++ +|.|+|+|++|..|+..|++.+++++++. ++.+++||++++++++.|..+++.+.+.++.+.+ +.+++
T Consensus 87 ~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~~ 166 (340)
T PRK09358 87 LEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRHFGEEAAARELEALAARYRDDG 166 (340)
T ss_pred HHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCCCCHHHHHHHHHHHHHHhcCCc
Confidence 344444 58999999999988889999988876544 6678889999999999998777776666665544 45556
Q ss_pred eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcE
Q 025169 84 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPV 160 (257)
Q Consensus 84 vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v 160 (257)
++|+|++|++..++++.++++++.|++.|+++++|++|+.++.++.++++ +|++||+||+++ +|+++++|+++|+++
T Consensus 167 vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v 246 (340)
T PRK09358 167 VVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGVRAIEDPALMARLADRRIPL 246 (340)
T ss_pred EEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeE
Confidence 99999999888888899999999999999999999999987778888887 899999999999 577899999999999
Q ss_pred EecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHH
Q 025169 161 EICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRV 240 (257)
Q Consensus 161 ~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~ 240 (257)
++||+||++++.+++++.||+++|+++||+|+||||+|++++++|++||+.+++.+|++.+++.++++||+++||+++++
T Consensus 247 ~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~~~~~~~~l~~~el~~l~~nai~~sf~~~~~ 326 (340)
T PRK09358 247 EVCPTSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYEALAEAFGLSDEDLAQLARNALEAAFLSEEE 326 (340)
T ss_pred EECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 025169 241 KEDLKEIFDLAEK 253 (257)
Q Consensus 241 k~~l~~~~~~~~~ 253 (257)
|++|++++++..|
T Consensus 327 k~~l~~~~~~~~~ 339 (340)
T PRK09358 327 KAALLAEVDAWLA 339 (340)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 7
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.7e-47 Score=338.06 Aligned_cols=240 Identities=30% Similarity=0.385 Sum_probs=219.3
Q ss_pred ccceeeee-ccCccccccC-CCchhhhhhHh----hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhh---CCCceEE
Q 025169 16 AVSAVDVD-FASRSIDVRR-PVNTKNMNDAC----NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM---RDLGVVG 86 (257)
Q Consensus 16 ~v~y~E~r-~~p~~~~~~~-~~~~~~~~~~~----~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~---~~~~vvg 86 (257)
||+|+|+| +.|++|+.+| .+.+++++.+. ++.+++||.+++|+|+.|+.+++.+.+++..+.+. .+..|+|
T Consensus 134 gVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~~~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvG 213 (399)
T KOG1097|consen 134 GVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAKRDFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNFVVG 213 (399)
T ss_pred CceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 69999999 7799999999 88888776544 67899999999999999999999998988877762 3456999
Q ss_pred EeccCCC-CCCChhcHHHHHHHHHHcCCceeeecCCCC-CHhhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcEE
Q 025169 87 IDLSGNP-TKGEWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVE 161 (257)
Q Consensus 87 ~~l~g~~-~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~-~~~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~ 161 (257)
|||+|+| ...++..|.+++..+++.|+++|+||||+. ++..++++++ +|++|||||+.+ +|+++.++++++|+++
T Consensus 214 idL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lE 293 (399)
T KOG1097|consen 214 IDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALDLLGTERIGHGYFLTKDPELINLLKSRNIALE 293 (399)
T ss_pred EecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHHhhCCccccCceeccCCHHHHHHHHhcCceEE
Confidence 9999998 567889999999999999999999999995 7778889998 899999999998 6778999999999999
Q ss_pred ecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCC-ChHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCCh
Q 025169 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFST-SVSREYDLAASAFS--LGRREMFQLAKSAVKFIFANG 238 (257)
Q Consensus 162 ~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~-~l~~E~~~a~~~~~--ls~~~v~~~~~n~~~~~~~~~ 238 (257)
+||+||..++.++++.+||+.+|++.|+|++||||||+.|++ .++.|++.+....+ ++.+++.++++||+++||+++
T Consensus 294 iCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~dfy~A~~~~~~~~~~~~l~~la~nai~~S~l~e 373 (399)
T KOG1097|consen 294 ICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSDDPGFFGAAPLTLDFYLAFLGIAPNLDLRELKRLALNAIKYSFLSE 373 (399)
T ss_pred EccchhhheeccccccccHHHHHHhCCCCEEEeCCCcccccCccccHHHHHHHHhccccCCHHHHHHHHHHHhhhccCCH
Confidence 999999999999999999999999999999999999999985 79999999988765 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 025169 239 RVKEDLKEIFDLAEKKL 255 (257)
Q Consensus 239 ~~k~~l~~~~~~~~~~~ 255 (257)
++|++++.+|++...+|
T Consensus 374 eek~~~l~~~~~~~~~~ 390 (399)
T KOG1097|consen 374 EEKNELLERVQKSWDKY 390 (399)
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999999999887766
No 8
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=100.00 E-value=1.8e-46 Score=350.61 Aligned_cols=252 Identities=21% Similarity=0.258 Sum_probs=216.4
Q ss_pred HHHHHHHHHHhh--ccceeeeeccC-ccccccCC--CchhhhhhHh----hcccCC--CcEEEEEEEeeCCCCHHHHHHH
Q 025169 4 RSYMDAVVEGLR--AVSAVDVDFAS-RSIDVRRP--VNTKNMNDAC----NGTRGK--KIYVRLLLSIDRRETTEAAMET 72 (257)
Q Consensus 4 ~~y~~~~~~~~~--~v~y~E~r~~p-~~~~~~~~--~~~~~~~~~~----~a~~~~--gir~~li~~~~r~~~~e~~~~~ 72 (257)
+.|+..+++.+. ||+|+|+|++| ..|+.+|. +.+++++.+. ++.++. +|.+++|+|..|..+++.+.+.
T Consensus 196 ~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~~R~~~~~~~~~~ 275 (479)
T TIGR01431 196 RDYYYRALEEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSPLRNKDKEELDNY 275 (479)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCCHHHHHHH
Confidence 345555555444 69999999997 78888887 4456665544 222223 6999999999999999999999
Q ss_pred HHHHHhhCC---CceEEEeccCCCC-CCChhcHHHHHH-HHHHcCCceeeecCCCC-----CHhhHHHHHhcCCcEEeec
Q 025169 73 VKLALEMRD---LGVVGIDLSGNPT-KGEWTTFLPALK-FAREQGLQITLHCGEIP-----NKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 73 ~~~~~~~~~---~~vvg~~l~g~~~-~~~~~~~~~~~~-~A~~~gl~v~~Ha~E~~-----~~~~i~~~l~lg~~ri~Hg 142 (257)
++.+.+++. +.++||||+|+|. ..|+..|.+.+. .+++.|+++++||||+. .+.++.+|+.+|++|||||
T Consensus 276 ~~~a~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG 355 (479)
T TIGR01431 276 IKVAMELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHG 355 (479)
T ss_pred HHHHHHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCc
Confidence 999987743 3599999999985 568889998887 45569999999999996 2467889998899999999
Q ss_pred ccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCC-ChHHHHHHHHHhCC--
Q 025169 143 CCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFST-SVSREYDLAASAFS-- 217 (257)
Q Consensus 143 ~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~-~l~~E~~~a~~~~~-- 217 (257)
+.+ +|++++++++++|++|+||+||..++.++++..||++.|+++||||+||||||+.+++ +|+.||+.+...++
T Consensus 356 ~~l~~~P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~~~ 435 (479)
T TIGR01431 356 FALVKHPLVLQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLASA 435 (479)
T ss_pred ccccCCHHHHHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhccc
Confidence 998 6999999999999999999999999999999999999999999999999999999994 89999999999887
Q ss_pred -CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc
Q 025169 218 -LGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKL 255 (257)
Q Consensus 218 -ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~~ 255 (257)
++..++.++++||+++||+++++|++++++|++.-+++
T Consensus 436 ~~~l~~L~~la~NSi~~Sfl~~~eK~~~~~~~~~~W~~f 474 (479)
T TIGR01431 436 KADLRTLKQLALNSIKYSALSEEEKRTALAKWQKQWDKF 474 (479)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999888877664
No 9
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=100.00 E-value=3.7e-46 Score=335.52 Aligned_cols=238 Identities=29% Similarity=0.411 Sum_probs=215.7
Q ss_pred HHHhh-ccceeeeeccCccccccCCCchhhhhhHh----hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceE
Q 025169 11 VEGLR-AVSAVDVDFASRSIDVRRPVNTKNMNDAC----NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVV 85 (257)
Q Consensus 11 ~~~~~-~v~y~E~r~~p~~~~~~~~~~~~~~~~~~----~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vv 85 (257)
.+.++ +|.|+|+|++|..++..|++.++++++++ ++.+++||+++++++++|..+++.+.+.++++.+|++++++
T Consensus 79 ~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~vv 158 (324)
T TIGR01430 79 EKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEETLELAKPYKEQTIV 158 (324)
T ss_pred HHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHhhccCcEE
Confidence 34444 58999999999999999999999887444 66789999999999999988888899999999888776789
Q ss_pred EEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHH-hcCCcEEeecccc--cHHHHHHHhcCCCcEEe
Q 025169 86 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML-DFLPQRIGHACCF--EEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 86 g~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l-~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~ 162 (257)
|+|+++.+..++++.+.++++.|+++|+++++|++|+.+..++..++ .+|++|++||+++ +++++++|+++|+++++
T Consensus 159 g~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~ 238 (324)
T TIGR01430 159 GFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHGVRALEDPELLKRLAQENITLEV 238 (324)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchhhhhccCHHHHHHHHHcCceEEE
Confidence 99999887778889999999999999999999999987666777777 5899999999999 77899999999999999
Q ss_pred cccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHH
Q 025169 163 CLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKE 242 (257)
Q Consensus 163 cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~ 242 (257)
||+||++++.+++++.||+++|+++||+|+||||+|++++++|++||..++..+|+++.|+.+++.||++++|+++++|+
T Consensus 239 cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~~~l~~~el~~~~~na~~~~f~~~~~k~ 318 (324)
T TIGR01430 239 CPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELKQLARNALEGSFLSDDEKK 318 (324)
T ss_pred CCcccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999876767799999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 025169 243 DLKEIF 248 (257)
Q Consensus 243 ~l~~~~ 248 (257)
+|++++
T Consensus 319 ~l~~~~ 324 (324)
T TIGR01430 319 ELLAKL 324 (324)
T ss_pred HHHhhC
Confidence 999864
No 10
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=100.00 E-value=7.9e-43 Score=313.85 Aligned_cols=239 Identities=33% Similarity=0.453 Sum_probs=214.3
Q ss_pred HHHHhh-ccceeeeeccCccccccCCCchhhhhhH----hhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCce
Q 025169 10 VVEGLR-AVSAVDVDFASRSIDVRRPVNTKNMNDA----CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGV 84 (257)
Q Consensus 10 ~~~~~~-~v~y~E~r~~p~~~~~~~~~~~~~~~~~----~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~v 84 (257)
+.+.++ +|.|+|+|++|..++..|++.++.++.+ .++.+++|+++++++++.|..+++.+.+.++++.+|+.+.+
T Consensus 79 ~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (325)
T cd01320 79 LEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQETLELALKYRDKGV 158 (325)
T ss_pred HHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCCE
Confidence 344444 5889999999999999999998876553 35677889999999999997788888999999988877779
Q ss_pred EEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCCcEEeecccc--cHHHHHHHhcCCCcEE
Q 025169 85 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVE 161 (257)
Q Consensus 85 vg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~ 161 (257)
+|+|+++.+...+++.++++++.|+++|+++++|++|+.++..+.++++ +|+++++||+++ +|+++++|+++|++++
T Consensus 159 vg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~~l~~~~~~~~~l~~~gi~v~ 238 (325)
T cd01320 159 VGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGIRAIEDPELVKRLAERNIPLE 238 (325)
T ss_pred EEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhhccCccHHHHHHHHHcCCeEE
Confidence 9999998776678899999999999999999999999977777888887 899999999999 5779999999999999
Q ss_pred ecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHH
Q 025169 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVK 241 (257)
Q Consensus 162 ~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k 241 (257)
+||+||+.++..+++..+|+++|+++||+|+||||+++++++++++||+.++..+++++.++.+++.||++++|+++++|
T Consensus 239 ~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~~~na~~~~f~~~~~k 318 (325)
T cd01320 239 VCPTSNVQTGAVKSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKLARNAVEASFLSEEEK 318 (325)
T ss_pred ECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999987666678999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 025169 242 EDLKEIF 248 (257)
Q Consensus 242 ~~l~~~~ 248 (257)
+++++.+
T Consensus 319 ~~~~~~~ 325 (325)
T cd01320 319 AELLKRI 325 (325)
T ss_pred HHHHhhC
Confidence 9998753
No 11
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=99.95 E-value=4.3e-27 Score=219.27 Aligned_cols=133 Identities=22% Similarity=0.270 Sum_probs=123.7
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.++.||||..+++++.+++ ++++|||||+.+ +|.++.++++++|++++||+||..+ ++++..||++.|+++|++
T Consensus 327 f~~r~HaGE~g~~~~l~~al-L~adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l--~~~~~~HP~~~~l~~Gl~ 403 (496)
T cd01319 327 FVLRPHCGEAGDIDHLASAF-LLAHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSL--FLSYEKNPFPEFFKRGLN 403 (496)
T ss_pred cceeeecCCCCChHHHHHHh-hcCcccccccccCCCHHHHHHHHHcCCeEEEecCccHhh--hcCcccChHHHHHHCCCe
Confidence 68999999999888998888 899999999988 6777788889999999999999865 567789999999999999
Q ss_pred EEecCCCCCCCCC---ChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 025169 191 LVLCTDDSGVFST---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 248 (257)
Q Consensus 191 v~lgTD~~~~~~~---~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~ 248 (257)
|+|+||||+.|++ +|.+||..+++.+++|..|+.++++||+.+||+++++|+.|++.+
T Consensus 404 VsInTDDPl~f~~t~~~L~eEY~~a~~~~~Ls~~Dl~eLarNSV~~Sf~~~~~K~~~l~~~ 464 (496)
T cd01319 404 VSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSTCDMCELARNSVLQSGFEHSIKRHWLGPN 464 (496)
T ss_pred EEEeCCCchhhCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999985 599999999999999999999999999999999999999999886
No 12
>PLN03055 AMP deaminase; Provisional
Probab=99.94 E-value=2.4e-26 Score=216.80 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=124.0
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.++.||||.++++.+.+++ +|++||+||+.+ +|.++.++++++|++++||+||.. .++++..||++.|+++|++
T Consensus 417 ~~~rpHAGEag~~~~v~~al-L~a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~--l~~~y~~HP~~~~~~~Gl~ 493 (602)
T PLN03055 417 IKFRPHAGEAGDIDHLAAAF-LLAHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNS--LFLDYHRNPFPMFFARGLN 493 (602)
T ss_pred CCccccCCCCCCHHHHHHHh-hCCceecCccccCCCHHHHHHHHHcCCeEEEccCcchh--hccchhhChHHHHHHCCCE
Confidence 67899999998888888888 999999999988 789999999999999999999984 4678899999999999999
Q ss_pred EEecCCCCCCCCC---ChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 025169 191 LVLCTDDSGVFST---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 247 (257)
Q Consensus 191 v~lgTD~~~~~~~---~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~ 247 (257)
|+|+||||+.+++ +|.+||..+++.+++|..|+.++++||+.+||+++++|+.|++.
T Consensus 494 VSInTDDPl~f~tT~epL~eEY~~aa~~~~LS~~DL~eLarNSV~~Sf~~~~~K~~~lg~ 553 (602)
T PLN03055 494 VSLSTDDPLQIHLTKEPLVEEYSIAAQVWKLSSCDLCEIARNSVLQSGFPHASKKHWVGD 553 (602)
T ss_pred EEEcCCCcchhcCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 9999999999986 59999999999999999999999999999999999999999975
No 13
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=99.94 E-value=4.6e-26 Score=215.58 Aligned_cols=137 Identities=23% Similarity=0.286 Sum_probs=125.5
Q ss_pred HHHcCCc---eeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHH
Q 025169 108 AREQGLQ---ITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFV 182 (257)
Q Consensus 108 A~~~gl~---v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~ 182 (257)
.++.|++ ++.||||..+++.+.+++ ++++||+||+.+ +|.+..++++++|++++||+||.. .+.++..|||+
T Consensus 431 R~~rGLnt~~LrpHaGEag~~e~l~~A~-L~adRIgHGi~l~~dp~L~yl~~~~qI~LevCPtSN~~--l~~~y~~HP~~ 507 (611)
T TIGR01429 431 RRERGLNTFLLRPHCGEAGSVDHLVSAF-LTSHGINHGILLRKVPVLQYLYYLTQIPIAMSPLSNNS--LFLEYSKNPLP 507 (611)
T ss_pred HHHcCCCccceeecCCCCCCHHHHHHHh-hcCcccccceecCCCHHHHHHHHHcCCeEEEcCCcchh--hccChhhChHH
Confidence 3555766 999999999888888888 899999999988 678888889999999999999983 46778899999
Q ss_pred HHHhcCCCEEecCCCCCCCCC---ChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 025169 183 DLYKAQHPLVLCTDDSGVFST---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 247 (257)
Q Consensus 183 ~l~~~Gv~v~lgTD~~~~~~~---~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~ 247 (257)
+|+++|++|+|+||||+.|++ +|.+||..+++.++++..|+.++++||+.+||+++++|++|++.
T Consensus 508 ~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~~~~Ls~~Dl~eLarNSV~~S~~~~~~K~~~lg~ 575 (611)
T TIGR01429 508 EYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQVWKLSTCDMCELARNSVLQSGFEHQVKQHWLGP 575 (611)
T ss_pred HHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Confidence 999999999999999999985 69999999999999999999999999999999999999999975
No 14
>PLN02768 AMP deaminase
Probab=99.93 E-value=2.2e-25 Score=213.79 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=124.0
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.++.||||..+++.+.+++ ++++||+||+.+ +|.++.++..++|++++||+||. +.+.++..|||++|+++|++
T Consensus 650 f~fRPHAGEag~~e~I~~Al-L~AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~--~l~~~y~~HPf~~f~~~GL~ 726 (835)
T PLN02768 650 IKFRPHSGEAGDIDHLAATF-LTCHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHRNPFPMFFLRGLN 726 (835)
T ss_pred cccccccCCCCCHHHHHHHH-hcCCccCCccccCcCHHHHHHHHHcCCeEEECCCcch--hhhcchhhChHHHHHHCCCE
Confidence 56999999999899999999 999999999988 68888899999999999999998 45778899999999999999
Q ss_pred EEecCCCCCCCCC---ChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 025169 191 LVLCTDDSGVFST---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 247 (257)
Q Consensus 191 v~lgTD~~~~~~~---~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~ 247 (257)
|+|+||||..|++ .|.+||..+++.++++..|+.++++||+.+||+++++|++|+..
T Consensus 727 VSLNTDDPL~fhtT~epL~EEYsvAak~~~LS~~DL~ELarNSV~aSff~~~~K~~wLg~ 786 (835)
T PLN02768 727 VSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGK 786 (835)
T ss_pred EEEcCCCccccCCCCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999986 59999999999999999999999999999999999999999975
No 15
>PRK07213 chlorohydrolase; Provisional
Probab=99.92 E-value=8.1e-24 Score=194.05 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=144.3
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
+.+.++..+.|+|+.++ +......++...+.++...+. ..|+++.+ +..++++.++++++.|+++|+++++|++
T Consensus 127 ~~~~~a~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~-~~~~s~~~l~~~~~~A~~~g~~v~~H~~ 200 (375)
T PRK07213 127 NLLKKASSDLPIKPIIL-GRPTEADENELKKEIREILKN----SDGIGLSG-ANEYSDEELKFICKECKREKKIFSIHAA 200 (375)
T ss_pred HHHHHHHHcCCCceEEe-cCCCcccchhhHHHHHHHHHh----cccccccc-cccCCHHHHHHHHHHHHHcCCEEEEeeC
Confidence 34445667889888642 111111233444444433221 22444444 3467889999999999999999999999
Q ss_pred CCCCH----------hhHHHHHhcCCc--EEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcC
Q 025169 121 EIPNK----------EEIQSMLDFLPQ--RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ 188 (257)
Q Consensus 121 E~~~~----------~~i~~~l~lg~~--ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G 188 (257)
|+..+ ..+..+.++|.. .++||++++++++++|+++|+.+++||+||++++. +.+|+++|+++|
T Consensus 201 e~~~e~~~~~~~~G~~~v~~~~~~G~~~~~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~----g~~~v~~l~~~G 276 (375)
T PRK07213 201 EHKGSVEYSLEKYGMTEIERLINLGFKPDFIVHATHPSNDDLELLKENNIPVVVCPRANASFNV----GLPPLNEMLEKG 276 (375)
T ss_pred CchhHHHHHHHHcCCChHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCcEEECCcchhhhcc----CCccHHHHHHCC
Confidence 98643 124555666665 89999999999999999999999999999999886 789999999999
Q ss_pred CCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 189 HPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 189 v~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|+|+||||+.++++.++++||+.+...+++++.+++++ +.|++++++++
T Consensus 277 v~v~lGTD~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 326 (375)
T PRK07213 277 ILLGIGTDNFMANSPSIFREMEFIYKLYHIEPKEILKMATINGAKILGLI 326 (375)
T ss_pred CEEEEeeCCCCCchHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC
Confidence 99999999976656799999999988789999999998 58999999875
No 16
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.91 E-value=3.6e-23 Score=190.11 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=145.2
Q ss_pred HhhcccCCCcEEEEEEEeeCCCCH---HHHHHHHHHHHhhC--CCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCcee
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRETT---EAAMETVKLALEMR--DLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQIT 116 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~~~---e~~~~~~~~~~~~~--~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v~ 116 (257)
++++.++.|+|+.+...++...+. +...+..+.+.++. .++.+.+.++ ..+++++++.++.+.+.|+++|++++
T Consensus 101 ~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~ 180 (381)
T cd01312 101 LLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPHAPYSVHPELAQDLIDLAKKLNLPLS 180 (381)
T ss_pred HHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCCCCcccCHHHHHHHHHHHHHcCCeEE
Confidence 456778899999999887653221 12223333333321 2334444444 35678899999999999999999999
Q ss_pred eecCCCCCHhh-H--------------------------HHHH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEecc
Q 025169 117 LHCGEIPNKEE-I--------------------------QSML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICL 164 (257)
Q Consensus 117 ~Ha~E~~~~~~-i--------------------------~~~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP 164 (257)
+|++|+..... + .+.+ + +|+ ..++||++++++++++|+++|+.+++||
T Consensus 181 ~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P 260 (381)
T cd01312 181 THFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCP 260 (381)
T ss_pred EEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECCcCCHHHHHHHHHcCCeEEECc
Confidence 99999843211 0 0111 1 355 4689999999999999999999999999
Q ss_pred cccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhCC-----CCHHHHHHH-HHHHHHHcCCC
Q 025169 165 TSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFS-----LGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 165 ~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~~-----ls~~~v~~~-~~n~~~~~~~~ 237 (257)
.||++++. +..|+++|+++||+|+||||++.+++ .+|++||+.+..... +++.++++| +.||+++.+++
T Consensus 261 ~sn~~lg~----g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~ 336 (381)
T cd01312 261 RSNRLLNG----GKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLN 336 (381)
T ss_pred chhhhhcC----CCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCCC
Confidence 99999886 77899999999999999999987776 599999999987643 578899998 58999999864
No 17
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.91 E-value=3.4e-23 Score=193.76 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=142.1
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCH---HH-HHHHHHHHHhhCC--CceEEEecc-CCCCCCChhcHHHHHHHHHHcC
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETT---EA-AMETVKLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFAREQG 112 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~---e~-~~~~~~~~~~~~~--~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~g 112 (257)
.+++++++++.|+|+.+.+.+.+..++ ++ ..+..++..+|+. ++.+.+.++ ..+++++++.++.+.+.|+++|
T Consensus 138 ~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~ 217 (441)
T TIGR03314 138 LSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATG 217 (441)
T ss_pred HHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcC
Confidence 566778899999999998887753221 11 2233344445543 234444444 3467889999999999999999
Q ss_pred CceeeecCCCCCHh----------hHHHHHh---cCCc-EEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCc
Q 025169 113 LQITLHCGEIPNKE----------EIQSMLD---FLPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDI 178 (257)
Q Consensus 113 l~v~~Ha~E~~~~~----------~i~~~l~---lg~~-ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~ 178 (257)
+++++|++|+.... .+....+ +|++ .++||++++++++++|+++|+.+++||.||++++. +.
T Consensus 218 ~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP~sn~~l~~----G~ 293 (441)
T TIGR03314 218 RGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNPESNMGNAV----GY 293 (441)
T ss_pred CCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECHHHHhhhcc----CC
Confidence 99999999985321 1111112 3554 58999999999999999999999999999999987 88
Q ss_pred ccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCC-------CHHHHHHH-HHHHHHHcC
Q 025169 179 HHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL-------GRREMFQL-AKSAVKFIF 235 (257)
Q Consensus 179 ~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~l-------s~~~v~~~-~~n~~~~~~ 235 (257)
.|+++|+++||+|+||||+. ..||++||+.++...+. ...++++| +.+|+++..
T Consensus 294 ~p~~~~~~~Gv~v~LGtD~~---~~d~~~em~~a~~~~~~~~~~~~~~~~~~~~~aT~~ga~al~ 355 (441)
T TIGR03314 294 NPVLRMFKNGILLGLGTDGY---TSDMFESLKFANFKHKDAGGDLNAAWPESPAMLFENNNEIAE 355 (441)
T ss_pred CCHHHHHHCCCEEEEcCCCC---CcCHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 35999999998765421 24678887 579988874
No 18
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.91 E-value=8.7e-23 Score=186.93 Aligned_cols=218 Identities=13% Similarity=0.012 Sum_probs=159.9
Q ss_pred HHHhh-ccceeeeeccCccccccCCCchh---hhhhHhhcccCCCcEEEEEEEeeCCCC------HHH-HHHHHH-HHHh
Q 025169 11 VEGLR-AVSAVDVDFASRSIDVRRPVNTK---NMNDACNGTRGKKIYVRLLLSIDRRET------TEA-AMETVK-LALE 78 (257)
Q Consensus 11 ~~~~~-~v~y~E~r~~p~~~~~~~~~~~~---~~~~~~~a~~~~gir~~li~~~~r~~~------~e~-~~~~~~-~~~~ 78 (257)
.+.++ ++.|+|+|.. .|++..+ +++++.++..+.|+++.++.+..+..+ +++ ..+..+ ...+
T Consensus 102 ~e~l~~Gvt~ve~~~~------~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (377)
T TIGR01224 102 KSMLRSGTTTAEVKSG------YGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRPDDYVDGICEELIPQ 175 (377)
T ss_pred HHHHHCCceEEEeccc------CCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHHHH
Confidence 34444 4788888732 2343332 334444556678899988744322222 111 112222 2222
Q ss_pred hCC-CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCC
Q 025169 79 MRD-LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSK 157 (257)
Q Consensus 79 ~~~-~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~ 157 (257)
+.. ..+.++++.+.+...+++.++++++.|+++|+++++|++|......+..+..+|..+++||++++++++++++++|
T Consensus 176 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~~~~~H~~~~~~~~l~~la~~g 255 (377)
T TIGR01224 176 VAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGAVSADHLEHASDAGIKALAEAG 255 (377)
T ss_pred HHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCCCccHHHhcCCHHHHHHHHhcC
Confidence 222 2367777777666677899999999999999999999998765555666666888999999999999999999999
Q ss_pred CcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC-CCC-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHc
Q 025169 158 IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG-VFS-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 158 i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~-~~~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~ 234 (257)
+.+++||+||+.++. +.+|+++|+++|++|++|||... .++ .++..++..+....+++..+++++ +.|+++++
T Consensus 256 ~~~~~~P~~~~~l~~----~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~l 331 (377)
T TIGR01224 256 TVAVLLPGTTFYLRE----TYPPARQLIDYGVPVALATDLNPGSSPTLSMQLIMSLACRLMKMTPEEALHAATVNAAYAL 331 (377)
T ss_pred CEEEECchHHHhcCC----cCccHHHHHHCCCCEEEECCCCCCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 999999999998874 67899999999999999999643 443 477777777777789999999996 68999999
Q ss_pred CCCh
Q 025169 235 FANG 238 (257)
Q Consensus 235 ~~~~ 238 (257)
++++
T Consensus 332 g~~~ 335 (377)
T TIGR01224 332 GLGE 335 (377)
T ss_pred CCCC
Confidence 9865
No 19
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.91 E-value=3.1e-23 Score=181.36 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=136.5
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
+.+++++++.+++|+|++.++. +....+...+ ..+ ...+++..+ +.+++ ++++++.|+++|+++++
T Consensus 78 ~~~~a~~~a~~~~g~r~~~~~~--~~~~~~~~~~----~~~----~~~~~~~~~-~~~~~---l~~~~~~A~~~g~~v~~ 143 (263)
T cd01305 78 EGIELLRRALGKLPVPFEVILG--RPTEPDDPEI----LLE----VADGLGLSS-ANDVD---LEDILELLRRRGKLFAI 143 (263)
T ss_pred hHHHHHHHHHHhcCCCceEEec--cCCcchHHHH----HHh----hcccccCCC-CCccC---HHHHHHHHHHCCCeeEE
Confidence 3567778899999999744433 2112111111 111 112222222 33333 99999999999999999
Q ss_pred ecCCCCC---HhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEec
Q 025169 118 HCGEIPN---KEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLC 194 (257)
Q Consensus 118 Ha~E~~~---~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lg 194 (257)
|++|... ...+..++++|+++++||++++++++++|+++|+.+++||+||++++. +.+|+++|+++||+|++|
T Consensus 144 H~~e~~~~~g~~~i~~~~~~~~~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l~~----g~~p~~~l~~~Gv~v~lG 219 (263)
T cd01305 144 HASETRESVGMTDIERALDLEPDLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGV----GIPPVAELLKLGIKVLLG 219 (263)
T ss_pred ecCCCCCCCCchhHHHHHhCCCCEEEEcCCCCHHHHHHHHHcCCcEEEChhhHHHhCC----CCCCHHHHHHCCCcEEEE
Confidence 9999864 234667777899999999999999999999999999999999998876 789999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCC----CHHHHHHH-HHHHHH
Q 025169 195 TDDSGVFSTSVSREYDLAASAFSL----GRREMFQL-AKSAVK 232 (257)
Q Consensus 195 TD~~~~~~~~l~~E~~~a~~~~~l----s~~~v~~~-~~n~~~ 232 (257)
||++..++.++++||+.+...+++ ++.+++++ +.||++
T Consensus 220 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~ 262 (263)
T cd01305 220 TDNVMVNEPDMWAEMEFLAKYSRLQGYLSPLEILRMATVNAAE 262 (263)
T ss_pred CCCCccCCCCHHHHHHHHHHHhcccccCCHHHHHHHHhhcccc
Confidence 999876668999999999887766 99999998 578865
No 20
>PTZ00310 AMP deaminase; Provisional
Probab=99.90 E-value=1.3e-23 Score=211.24 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=124.4
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.++.||||..+++++.+++ +|++||+||+.+ +|.++.++..++|++++||+||.. .++++..|||++|+++|++
T Consensus 1110 f~~rpHAGEag~~~hI~~Al-L~a~RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~--l~~sy~~hP~~~f~~~Gl~ 1186 (1453)
T PTZ00310 1110 FALRPHCGESGSMDHLYGAF-LCANSICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNA--LFLAFLENPFPVFFHRGLN 1186 (1453)
T ss_pred cCccccCCCCCCHHHHHHHH-hCCccccchhhhCcCHHHHHHHHHcCCeEEECCCchHh--hhhchhhCcHHHHHHCCCE
Confidence 47999999999999999999 999999999988 788899999999999999999975 4678899999999999999
Q ss_pred EEecCCCCCCCCCC---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 025169 191 LVLCTDDSGVFSTS---VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 247 (257)
Q Consensus 191 v~lgTD~~~~~~~~---l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~ 247 (257)
|+||||||+.|+++ |.+||..+++.+++|..|+.++++||+..|+.+...|+.|+..
T Consensus 1187 VSLnTDDPl~f~tT~EpL~eEYsiaa~~~~LS~~Dl~elarNSV~~SGf~~~~K~~wlG~ 1246 (1453)
T PTZ00310 1187 VSLSTDDPLMFHQTQEPLIEEYSIAARVWGLSLNDLCEIARNSVLQSGFDAAFKRNAIGD 1246 (1453)
T ss_pred EEECCCCccccCCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCHHHHHHhhcc
Confidence 99999999999977 9999999999999999999999999999999999999999973
No 21
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.90 E-value=5e-22 Score=185.85 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=142.1
Q ss_pred hhhhHhhcccCCCcEEEEEEEeeCCCCHHH----HHHHHHHHHhhCC--CceEEEecc-CCCCCCChhcHHHHHHHHHHc
Q 025169 39 NMNDACNGTRGKKIYVRLLLSIDRRETTEA----AMETVKLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~~~~r~~~~e~----~~~~~~~~~~~~~--~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~ 111 (257)
.++++++++++.|+|+.+...+.+..+.+. ..+..++...++. .+.+.+.++ ..+++++++.++.+++.|+++
T Consensus 138 ~~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~ 217 (442)
T PRK07203 138 SLFTIADAAKKVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKET 217 (442)
T ss_pred hHHHHHHHHHHhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHc
Confidence 345677888999999998876654322222 2233344444443 234555544 346688999999999999999
Q ss_pred CCceeeecCCCCCHhh----------HHHHHh---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCC
Q 025169 112 GLQITLHCGEIPNKEE----------IQSMLD---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLD 177 (257)
Q Consensus 112 gl~v~~Ha~E~~~~~~----------i~~~l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~ 177 (257)
|+++++|++|+..+.. +....+ +++ ..++||++++++++++|+++|+.+++||.||++++. +
T Consensus 218 g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~----g 293 (442)
T PRK07203 218 GRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAV----G 293 (442)
T ss_pred CCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhccc----C
Confidence 9999999999854311 111111 455 458999999999999999999999999999999987 7
Q ss_pred cccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCC-------CCHHHHHHH-HHHHHHHcC
Q 025169 178 IHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFS-------LGRREMFQL-AKSAVKFIF 235 (257)
Q Consensus 178 ~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~-------ls~~~v~~~-~~n~~~~~~ 235 (257)
..|+++|+++||+|+||||+. ..||++||+.+....+ .+..++++| +.+|+++..
T Consensus 294 ~~p~~~~~~~Gv~v~lGtD~~---~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg 356 (442)
T PRK07203 294 YNPVLEMIKNGILLGLGTDGY---TSDMFESYKVANFKHKHAGGDPNVGWPESPAMLFENNNKIAE 356 (442)
T ss_pred CCCHHHHHHCCCeEEEcCCCC---CccHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999974 3599999998764321 235788887 589999886
No 22
>PRK09228 guanine deaminase; Provisional
Probab=99.89 E-value=6.8e-22 Score=184.55 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=150.1
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCC-------CHHHH-HHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHH
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRE-------TTEAA-METVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~-------~~e~~-~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A 108 (257)
...++.+++.++.|+|+.+...+.+.. ..++. .+..++..+|.+++.+.+.++ ..+++++++.++++.+.|
T Consensus 141 ~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA 220 (433)
T PRK09228 141 QSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIERWHGKGRLLYAITPRFAPTSTPEQLEAAGALA 220 (433)
T ss_pred HHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCCCCceEEEECCcCCcCCHHHHHHHHHHH
Confidence 355677788899999999987765421 12222 233444555654444554544 245678899999999999
Q ss_pred HHc-CCceeeecCCCCCHh-hHHH----------HH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceec
Q 025169 109 REQ-GLQITLHCGEIPNKE-EIQS----------ML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTE 171 (257)
Q Consensus 109 ~~~-gl~v~~Ha~E~~~~~-~i~~----------~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~ 171 (257)
+++ |+++++|++|+..+. .+.+ .+ + +++ ..++||++++++++++|+++|+.+++||+||++++
T Consensus 221 ~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg 300 (433)
T PRK09228 221 REHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLG 300 (433)
T ss_pred HHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhc
Confidence 998 999999999986431 1111 11 2 344 46799999999999999999999999999999887
Q ss_pred cccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh-----CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 172 TISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-----FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 172 ~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~-----~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
. +..|+.+|+++|++|+||||.+..+..|++++|+.+... .++++.+++++ +.|++++.++++
T Consensus 301 ~----g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~ 369 (433)
T PRK09228 301 S----GLFDLKRADAAGVRVGLGTDVGGGTSFSMLQTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDD 369 (433)
T ss_pred C----CCcCHHHHHHCCCeEEEecCCCCCCCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 6 788999999999999999998654457999999888653 46799999998 589999999864
No 23
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.89 E-value=3e-22 Score=187.05 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=145.4
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCH---HH-HHHHHHHHHhhCC-CceEEEecc-CCCCCCChhcHHHHHHHHHHcCCce
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETT---EA-AMETVKLALEMRD-LGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQI 115 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~---e~-~~~~~~~~~~~~~-~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v 115 (257)
.+.+++++.|+|+.+...+.+...+ +. ..+..++..+|.. .+.+.+.++ ..+++++++.++++++.|+++|+++
T Consensus 134 ~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v 213 (435)
T PRK15493 134 AIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMV 213 (435)
T ss_pred HHHHHHHHcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcE
Confidence 4557778899999888766552221 12 2334444455543 233444444 3577889999999999999999999
Q ss_pred eeecCCCCCHh-h---------HHHHHh---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccH
Q 025169 116 TLHCGEIPNKE-E---------IQSMLD---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHF 181 (257)
Q Consensus 116 ~~Ha~E~~~~~-~---------i~~~l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi 181 (257)
++|++|+.... . +....+ +++ ..++||++++++++++|+++|+.+++||.||++++. +..|+
T Consensus 214 ~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~----g~~p~ 289 (435)
T PRK15493 214 HIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGS----GIANV 289 (435)
T ss_pred EEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhc----CcccH
Confidence 99999984221 1 111112 233 468999999999999999999999999999998886 78999
Q ss_pred HHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHHcCCC
Q 025169 182 VDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 182 ~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~--------~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
++|+++||+|+||||++.+++ .||++||+.+... ..+++.+++++ +.|++++.+++
T Consensus 290 ~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 355 (435)
T PRK15493 290 KAMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIGMK 355 (435)
T ss_pred HHHHHCCCeEEEccCccccCCCcCHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCC
Confidence 999999999999999876665 6999999986643 25789999998 58999998875
No 24
>PRK08418 chlorohydrolase; Provisional
Probab=99.89 E-value=6.2e-22 Score=183.51 Aligned_cols=190 Identities=17% Similarity=0.063 Sum_probs=138.8
Q ss_pred hhcccCCCcEEEEEEEeeCCCC--H-HHHHHHHHHHHhh--CCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 44 CNGTRGKKIYVRLLLSIDRRET--T-EAAMETVKLALEM--RDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 44 ~~a~~~~gir~~li~~~~r~~~--~-e~~~~~~~~~~~~--~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
++++++.|+|+.+......... . +...+.++..... .....+.+.++ +.+++++++.++++.+.|+++|+++++
T Consensus 129 ~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~ 208 (408)
T PRK08418 129 LEICAKSPLRVVFFNEILGSNASAVDELYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVST 208 (408)
T ss_pred HHHHHhcCCeEEEEeeeeCCCccchhhhHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 4677899999988665543211 1 1112222222211 11223444444 357889999999999999999999999
Q ss_pred ecCCCCCHh-hHH------------------------HHH-hcC-C-cEEeecccccHHHHHHHhcCCCcEEecccccce
Q 025169 118 HCGEIPNKE-EIQ------------------------SML-DFL-P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIR 169 (257)
Q Consensus 118 Ha~E~~~~~-~i~------------------------~~l-~lg-~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~ 169 (257)
|++|+..+. .+. +.+ .+| + ..++||++++++++++|+++|+.+++||.||++
T Consensus 209 H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~~~~~~~H~~~~~~~di~~la~~g~~v~~cP~sn~~ 288 (408)
T PRK08418 209 HFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKGLRTLFTHCVYASEEELEKIKSKNASITHCPFSNRL 288 (408)
T ss_pred EecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCCCCeEEEecccCCHHHHHHHHHcCCcEEECHhHHHH
Confidence 999974221 010 111 233 3 458999999999999999999999999999999
Q ss_pred eccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhC-C----CCHHHHHHH-HHHHHHHcCCC
Q 025169 170 TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-S----LGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~-~----ls~~~v~~~-~~n~~~~~~~~ 237 (257)
++. +..|+++|+++||+|+||||++++++ .++++||+.+.... + .++++++++ ++||+++++++
T Consensus 289 lg~----g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~ 359 (408)
T PRK08418 289 LSN----KALDLEKAKKAGINYSIATDGLSSNISLSLLDELRAALLTHANMPLLELAKILLLSATRYGAKALGLN 359 (408)
T ss_pred hcC----CCccHHHHHhCCCeEEEeCCCCCCCCCcCHHHHHHHHHHHhccCCccccHHHHHHHHHHHHHHHhCCC
Confidence 987 78999999999999999999877765 69999999877542 2 236788887 58999999874
No 25
>PRK06687 chlorohydrolase; Validated
Probab=99.89 E-value=8e-22 Score=183.23 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=145.6
Q ss_pred hhHhhcccCCCcEEEEEEEeeCC--CCHHH-HHHHHHHHHhhCC--CceEEEecc-CCCCCCChhcHHHHHHHHHHcCCc
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRR--ETTEA-AMETVKLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQ 114 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~--~~~e~-~~~~~~~~~~~~~--~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~ 114 (257)
++++++.++.|+|+.+...+... .+.++ ..+..++..++.. ...+.+.++ ..+++++++.++++++.|+++|++
T Consensus 132 ~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~ 211 (419)
T PRK06687 132 QQIYQVVKTSKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIP 211 (419)
T ss_pred HHHHHHHHHhCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 45567788889999887765432 12222 2333344444432 223444444 346788999999999999999999
Q ss_pred eeeecCCCCCHhh-HH--------HHH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCccc
Q 025169 115 ITLHCGEIPNKEE-IQ--------SML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH 180 (257)
Q Consensus 115 v~~Ha~E~~~~~~-i~--------~~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p 180 (257)
+++|++|+..... +. +.+ + +++ ..++||++++++++++|+++|+.+++||.||+.++. +..|
T Consensus 212 i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~----g~~p 287 (419)
T PRK06687 212 LHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLAS----GIAP 287 (419)
T ss_pred EEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhcc----CCCc
Confidence 9999999853211 11 111 1 234 468999999999999999999999999999999886 7899
Q ss_pred HHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhC--------CCCHHHHHHHH-HHHHHHcCCCh
Q 025169 181 FVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF--------SLGRREMFQLA-KSAVKFIFANG 238 (257)
Q Consensus 181 i~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~--------~ls~~~v~~~~-~n~~~~~~~~~ 238 (257)
+++|+++||+|+||||++++++ .|+++||+.++... .++..++++++ .|+++++++++
T Consensus 288 ~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~ 355 (419)
T PRK06687 288 IIQLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGMEN 355 (419)
T ss_pred HHHHHHCCCeEEEeCCCCCCCCChhHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCCC
Confidence 9999999999999999977665 69999999876543 37899999985 79999999865
No 26
>PTZ00310 AMP deaminase; Provisional
Probab=99.89 E-value=1.1e-22 Score=204.62 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=123.4
Q ss_pred HHcC---CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHH
Q 025169 109 REQG---LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVD 183 (257)
Q Consensus 109 ~~~g---l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~ 183 (257)
++.| +.+..||||.+..+.+..++ +-++||+||+.+ ++.+..++++++|++++||+||..++. +++..|||++
T Consensus 473 ~~RGlNTf~LRPhcgeag~~dhLv~~f-LladRI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~l~v-~sy~~HPi~~ 550 (1453)
T PTZ00310 473 KRKGLNTLQLRPSGEKAPAYDQLISSY-LLGDVITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSI-TAYFDHPLPK 550 (1453)
T ss_pred HhCCCCeEEecCCCCCCCCHHHHHHHH-HhhccccchhccCchHHHHHHHHHcCCeEEECCCcccccCC-CchhhCcHHH
Confidence 4445 45788999998887765555 568999999988 445555556999999999999999986 7889999999
Q ss_pred HHhcCCCEEecCCCCCCCCCC---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 025169 184 LYKAQHPLVLCTDDSGVFSTS---VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDL 250 (257)
Q Consensus 184 l~~~Gv~v~lgTD~~~~~~~~---l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~ 250 (257)
|+++|++|+|+||||+.|+++ |.+||..+++.+|++..|+.++++||+.+||+++++|++|++.+-.
T Consensus 551 fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaaq~~gLS~~DL~eLarNSV~aSf~~~e~K~~lLg~l~~ 620 (1453)
T PTZ00310 551 FLHRCLRVSISTSDPLYFHHHSQPLIEEYATAMKLFSLSPLDTTELARNSVLNSSFPPEVKQQWLGERFQ 620 (1453)
T ss_pred HHHCCCEEEECCCCccccCCCCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc
Confidence 999999999999999999974 9999999999999999999999999999999999999999988643
No 27
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.88 E-value=2e-21 Score=181.24 Aligned_cols=197 Identities=19% Similarity=0.144 Sum_probs=147.9
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCC-------HHH-HHHHHHHHHhhCCC-ceEEEecc-CCCCCCChhcHHHHHHH
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRET-------TEA-AMETVKLALEMRDL-GVVGIDLS-GNPTKGEWTTFLPALKF 107 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~-------~e~-~~~~~~~~~~~~~~-~vvg~~l~-g~~~~~~~~~~~~~~~~ 107 (257)
+..++++++..+.|+|+.+.....+..+ .++ ..+..++..++... +.+...++ ..+++++++.++++++.
T Consensus 137 ~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~ 216 (429)
T cd01303 137 ESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIERWHGKSGRVKPAITPRFAPSCSEELLAALGKL 216 (429)
T ss_pred hHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEEEEecCcCCcCCHHHHHHHHHH
Confidence 4456777888999999998877654211 121 12233344444432 34444444 34667889999999999
Q ss_pred HHHcC-CceeeecCCCCCH-hhHHH----------HH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEeccccccee
Q 025169 108 AREQG-LQITLHCGEIPNK-EEIQS----------ML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRT 170 (257)
Q Consensus 108 A~~~g-l~v~~Ha~E~~~~-~~i~~----------~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l 170 (257)
|+++| +++++|+.|+... +.+.. .+ + +|+ ..++||++++++++++|+++|+.+++||+||+.+
T Consensus 217 A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l 296 (429)
T cd01303 217 AKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFL 296 (429)
T ss_pred HHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhh
Confidence 99999 9999999987432 11111 11 1 244 4699999999999999999999999999999988
Q ss_pred ccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh-----------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 171 ETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-----------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 171 ~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~-----------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+. +..|+++|+++|++|++|||+++.++.+++++|+.+... .++++.+++++ |.|+++++++++
T Consensus 297 ~~----g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~ 372 (429)
T cd01303 297 GS----GLFDVRKLLDAGIKVGLGTDVGGGTSFSMLDTLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDD 372 (429)
T ss_pred cc----CCCCHHHHHHCCCeEEEeccCCCCCCccHHHHHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCCC
Confidence 76 778999999999999999998766667999999887653 13689999998 589999999865
No 28
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.88 E-value=1.1e-21 Score=179.07 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=130.3
Q ss_pred CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEE
Q 025169 82 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVE 161 (257)
Q Consensus 82 ~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~ 161 (257)
..+.++++.+.....+.+.++++++.|+++|+++++|+.|......+..+..+|..+++||+++++++++++++.|+.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~~~i~H~~~~~~~~i~~la~~g~~v~ 255 (371)
T cd01296 176 NLADFCDVFCEKGAFSLEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGALSADHLEHTSDEGIAALAEAGTVAV 255 (371)
T ss_pred CCCCEEEEeecCCccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCCCeeHHhcCCCHHHHHHHHHcCCeEE
Confidence 34667776665555678899999999999999999999987655566666678999999999999999999999999999
Q ss_pred ecccccceeccccCCCcccHHHHHhcCCCEEecCCC-CCCCC-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD-SGVFS-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 162 ~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~-~~~~~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+||++|+.++. +.+|+++|+++|+++++|||+ |..++ .++..++..+....+++..+++++ +.|++++.++++
T Consensus 256 ~~P~~~~~l~~----~~~~~~~l~~~Gv~v~lgsD~~p~~~~~~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~ 331 (371)
T cd01296 256 LLPGTAFSLRE----TYPPARKLIDAGVPVALGTDFNPGSSPTSSMPLVMHLACRLMRMTPEEALTAATINAAAALGLGE 331 (371)
T ss_pred EChHHHHHhCC----CCCCHHHHHHCCCcEEEecCCCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999998775 578999999999999999996 54444 358888988887789999999987 689999999864
No 29
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.88 E-value=1.5e-21 Score=181.73 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=142.7
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHH----HHHHHHHHHhhC--CCceEEEecc-CCCCCCChhcHHHHHHHHHHcCC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEA----AMETVKLALEMR--DLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~----~~~~~~~~~~~~--~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
++++++..+.|+|+.+.+++.+..+++. ..+..++...++ ..+.+...++ ..++.++++.++++++.|+++|+
T Consensus 124 ~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~ 203 (424)
T PRK08393 124 EEVAKATLEVGLRGYLSYGMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNK 203 (424)
T ss_pred HHHHHHHHHhCCeEEEeceEecCCCccchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCC
Confidence 3566778889999998887665433322 222323322222 2233444443 34667899999999999999999
Q ss_pred ceeeecCCCCCHh----------hHHHHHh---cCCc-EEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcc
Q 025169 114 QITLHCGEIPNKE----------EIQSMLD---FLPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIH 179 (257)
Q Consensus 114 ~v~~Ha~E~~~~~----------~i~~~l~---lg~~-ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~ 179 (257)
++++|++|+.... .+..+.. ++++ .++||++++++++++|+++|+.+++||.||+.++. +..
T Consensus 204 ~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~----g~~ 279 (424)
T PRK08393 204 LITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGS----GVM 279 (424)
T ss_pred cEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhcc----CCC
Confidence 9999999984321 1111222 3454 58999999999999999999999999999999886 788
Q ss_pred cHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh---CC-----CCHHHHHHH-HHHHHHHcCCC
Q 025169 180 HFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA---FS-----LGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 180 pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~---~~-----ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|+++|+++|++|++|||++.+++ .++++|++.+... .+ +++.+++++ +.|+++.++++
T Consensus 280 ~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~ 347 (424)
T PRK08393 280 PLRKLLNAGVNVALGTDGAASNNNLDMLREMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGLK 347 (424)
T ss_pred CHHHHHHCCCcEEEecCCCccCCchhHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987665 5999999976522 11 467888887 68999999874
No 30
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.88 E-value=1.1e-20 Score=175.57 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=140.2
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCC-----CCH--------HHHHHHHHHHH----hhCCCceEEEecc-CCCCCCChh
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRR-----ETT--------EAAMETVKLAL----EMRDLGVVGIDLS-GNPTKGEWT 99 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~-----~~~--------e~~~~~~~~~~----~~~~~~vvg~~l~-g~~~~~~~~ 99 (257)
+..+++++++.+.|+|+.+..++... .++ ....+.++... .++..+.+.++++ ..+..++++
T Consensus 128 ~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e 207 (418)
T cd01313 128 ELAQRVIAAASDAGIGITLLPVLYARAGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAE 207 (418)
T ss_pred hhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHH
Confidence 44577889999999999987655421 110 01112222221 2233333333333 335678999
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCHh----------hHHHHHh---cCC-cEEeecccccHHHHHHHhcCCCcEEeccc
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNKE----------EIQSMLD---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~~----------~i~~~l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
.++.+++.|++ |+++++|++|+.... .+....+ +++ ..++||++++++++++|+++|+.+++||+
T Consensus 208 ~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~ 286 (418)
T cd01313 208 QLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCPT 286 (418)
T ss_pred HHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECCC
Confidence 99999999999 999999999874211 1111111 344 36899999999999999999999999999
Q ss_pred ccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh--------------CCCCHHHHHHH-HHHH
Q 025169 166 SNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------------FSLGRREMFQL-AKSA 230 (257)
Q Consensus 166 SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~--------------~~ls~~~v~~~-~~n~ 230 (257)
||++++. +..|+++|+++||+|+||||++. ..+++++|+.+... ..+++.+++++ |.||
T Consensus 287 sn~~lg~----g~~p~~~l~~~Gv~v~lGtD~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~g 360 (418)
T cd01313 287 TEANLGD----GIFPAAALLAAGGRIGIGSDSNA--RIDLLEELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGG 360 (418)
T ss_pred chhhccC----CCCCHHHHHHCCCcEEEecCCCC--CcCHHHHHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHH
Confidence 9999886 78999999999999999999642 35899999887632 26899999998 6899
Q ss_pred HHHcCCC
Q 025169 231 VKFIFAN 237 (257)
Q Consensus 231 ~~~~~~~ 237 (257)
+++.+++
T Consensus 361 A~alg~~ 367 (418)
T cd01313 361 AQALGLA 367 (418)
T ss_pred HHHhCCC
Confidence 9999874
No 31
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.87 E-value=8.5e-21 Score=175.31 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=144.5
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCC-C------CHHHH-HHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHH
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRR-E------TTEAA-METVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFARE 110 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~-~------~~e~~-~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~ 110 (257)
.++.+++.++.|+|+.+.....+. . +.... .+..++..++...+.+.+.+. ..+++++++.++++++.|++
T Consensus 118 ~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~ 197 (401)
T TIGR02967 118 VDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIERWHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKE 197 (401)
T ss_pred HHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEEEECCcCCcCcHHHHHHHHHHHHh
Confidence 345667888999998776655431 1 12222 233344445544444444443 23557788999999999999
Q ss_pred c-CCceeeecCCCCCHh-hHHH----------HH-h---cCCc-EEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 111 Q-GLQITLHCGEIPNKE-EIQS----------ML-D---FLPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 111 ~-gl~v~~Ha~E~~~~~-~i~~----------~l-~---lg~~-ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
+ |+++++|++|+.... .+.+ .+ + +|++ .++||++++++++++++++|+.+++||+||+.++.
T Consensus 198 ~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~- 276 (401)
T TIGR02967 198 YPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGS- 276 (401)
T ss_pred CCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCCeEEEChHHHHHhcc-
Confidence 9 999999999885431 1111 11 1 3454 47999999999999999999999999999998876
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh-----CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-----FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~-----~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+..|+++|+++|++|++|||++.....+++++++.+... .++++.+++++ +.|+++++++++
T Consensus 277 ---g~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~ 344 (401)
T TIGR02967 277 ---GLFNLKKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQLQGARLSPFEAFYLATLGGARALDLDD 344 (401)
T ss_pred ---CCCCHHHHHHCCCeEEEecCCCCCCCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCCcC
Confidence 778999999999999999998654446899999987654 46899999998 579999998764
No 32
>PRK09230 cytosine deaminase; Provisional
Probab=99.87 E-value=6.5e-21 Score=177.57 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=143.1
Q ss_pred HHHhh-ccceeeeeccCccccccCCCchhhhhhHhhc------ccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc
Q 025169 11 VEGLR-AVSAVDVDFASRSIDVRRPVNTKNMNDACNG------TRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG 83 (257)
Q Consensus 11 ~~~~~-~v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a------~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~ 83 (257)
.+.++ .+-|++.+++|.... . ++++++.++ ..+.||++....++.+. +...+.++.+.++..+
T Consensus 109 ~e~l~~GvTtvr~~~d~~~~~---~---~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~~~---~~~~~~l~~a~~~~~~- 178 (426)
T PRK09230 109 KWQIANGIQHVRTHVDVSDPT---L---TALKAMLEVKEEVAPWVDLQIVAFPQEGILSY---PNGEALLEEALRLGAD- 178 (426)
T ss_pred HHHHHcCcccEEeccccCCcc---h---hHHHHHHHHHHHhhCcceEEEEeccCccccCC---ccHHHHHHHHHHcCCC-
Confidence 33343 478999998874321 1 233333322 23334443333322321 2234556666666443
Q ss_pred eEEEeccCCCCC--CChhcHHHHHHHHHHcCCceeeecCCCCCHhh--HHHHH------hcCC-cEEeecccc-------
Q 025169 84 VVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPNKEE--IQSML------DFLP-QRIGHACCF------- 145 (257)
Q Consensus 84 vvg~~l~g~~~~--~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~--i~~~l------~lg~-~ri~Hg~~l------- 145 (257)
++|. ....++. ++++.+..+++.|+++|+++++|++|+..+.. ....+ .++. ..++||+++
T Consensus 179 ~vg~-~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~ 257 (426)
T PRK09230 179 VVGA-IPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAY 257 (426)
T ss_pred EEeC-CCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHH
Confidence 4442 1122333 35788999999999999999999999876432 22111 1444 458999999
Q ss_pred cHHHHHHHhcCCCcEEecccccceeccc----c-CCCcccHHHHHhcCCCEEecCCCCCC----CC-CChHHHHHHHHHh
Q 025169 146 EEEEWRKLKSSKIPVEICLTSNIRTETI----S-SLDIHHFVDLYKAQHPLVLCTDDSGV----FS-TSVSREYDLAASA 215 (257)
Q Consensus 146 ~~~~~~~l~~~~i~v~~cP~SN~~l~~~----~-~~~~~pi~~l~~~Gv~v~lgTD~~~~----~~-~~l~~E~~~a~~~ 215 (257)
+++++++|+++|+.+++||+||++++.. | ..+..|+++|+++||+|+||||++.. ++ .++++++..+...
T Consensus 258 ~~~~~~~La~~gv~vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~~~~~~~~~ 337 (426)
T PRK09230 258 TSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHV 337 (426)
T ss_pred HHHHHHHHHHcCCeEEECcchhhhhcCCCCCCCCCCCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988621 1 13677899999999999999998642 23 6899998876432
Q ss_pred ---CCC-CHHHHHHH-HHHHHHHcCCCh
Q 025169 216 ---FSL-GRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 216 ---~~l-s~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+. +..++++| +.|++++.++++
T Consensus 338 ~~~~~~~~~~~~l~maT~~gA~alg~~~ 365 (426)
T PRK09230 338 CQLMGYGQINDGLNLITTHSARTLNLQD 365 (426)
T ss_pred HhhCChhhHHHHHHHHhcchhHHhCCCC
Confidence 223 25789998 579999999864
No 33
>PRK12393 amidohydrolase; Provisional
Probab=99.87 E-value=1.5e-20 Score=176.69 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=144.3
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCC--------------CCHHHHHH-HHHHHHhhCC---CceEEEecc--CCCCCCC
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRR--------------ETTEAAME-TVKLALEMRD---LGVVGIDLS--GNPTKGE 97 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~--------------~~~e~~~~-~~~~~~~~~~---~~vvg~~l~--g~~~~~~ 97 (257)
+..++++++.++.|+|+.+..+.... ...++..+ ..++...|.+ .+.+.+.++ ...++++
T Consensus 137 ~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (457)
T PRK12393 137 DTGDILFDEAEALGMRFVLCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLP 216 (457)
T ss_pred chHHHHHHHHHHcCCeEEEEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcC
Confidence 34567788999999999988754321 01222222 2223334432 123333333 3226788
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH------------Hh---cCC-cEEeecccccHHHHHHHhcCCCcEE
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSM------------LD---FLP-QRIGHACCFEEEEWRKLKSSKIPVE 161 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~------------l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~ 161 (257)
++.++++++.|+++|+++++|++|+... +..+ .. +++ .+++||+++++++++++++.|+.++
T Consensus 217 ~e~l~~~~~~a~~~g~~~~~H~~e~~~~--~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~ 294 (457)
T PRK12393 217 PELLREVARAARGMGLRLHSHLSETVDY--VDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIA 294 (457)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCHHH--HHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEE
Confidence 9999999999999999999999997432 1111 11 344 3589999999999999999999999
Q ss_pred ecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhC-------CCCHHHHHHH-HHHHHH
Q 025169 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-------SLGRREMFQL-AKSAVK 232 (257)
Q Consensus 162 ~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~-------~ls~~~v~~~-~~n~~~ 232 (257)
+||.||+.++. +..|+++|+++|++|++|||++.+++ .|++++|+.+.... .++..+++++ +.|+++
T Consensus 295 ~~P~sn~~lg~----g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~ 370 (457)
T PRK12393 295 HCPQSNGRLGS----GIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHAAWLLHRAEGGADATTVEDVVHWGTAGGAR 370 (457)
T ss_pred ECchhhhhhcc----cCCCHHHHHHCCCeEEEecCCcccCCCccHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHH
Confidence 99999999986 78999999999999999999987665 69999998776543 3789999998 589999
Q ss_pred HcCCC
Q 025169 233 FIFAN 237 (257)
Q Consensus 233 ~~~~~ 237 (257)
+.+++
T Consensus 371 ~l~~~ 375 (457)
T PRK12393 371 VLGLD 375 (457)
T ss_pred HhCCC
Confidence 99875
No 34
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.87 E-value=3e-20 Score=174.56 Aligned_cols=192 Identities=16% Similarity=0.140 Sum_probs=138.9
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCC-----CC-----------HHHHHHHHH-HHHhhCCCceEEEecc-CCCCCCChh
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRR-----ET-----------TEAAMETVK-LALEMRDLGVVGIDLS-GNPTKGEWT 99 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~-----~~-----------~e~~~~~~~-~~~~~~~~~vvg~~l~-g~~~~~~~~ 99 (257)
+..++++++.++.|+|+.+...+... .+ ++...+..+ +...++..+.+.++++ ..+++++++
T Consensus 137 ~~~~a~~~a~~e~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e 216 (456)
T PRK09229 137 EMALRIVAAARAAGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPD 216 (456)
T ss_pred HHHHHHHHHHHHcCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHH
Confidence 45677889999999999887544321 01 121222221 2222343333433333 245678999
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCH-hhHH--------HHH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEeccc
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNK-EEIQ--------SML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~-~~i~--------~~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
.++++++.| ++|+++++|++|+... ..+. +.+ + +++ ..++||++++++++++|+++|+.+++||+
T Consensus 217 ~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P~ 295 (456)
T PRK09229 217 QLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCPT 295 (456)
T ss_pred HHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECch
Confidence 999999999 9999999999987421 1110 111 1 344 47899999999999999999999999999
Q ss_pred ccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh---------------CCCCHHHHHHH-HHH
Q 025169 166 SNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA---------------FSLGRREMFQL-AKS 229 (257)
Q Consensus 166 SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~---------------~~ls~~~v~~~-~~n 229 (257)
||+.++. +..|+++|+++||+|+||||++. ..+++++|+.+... ..++..+++++ |+|
T Consensus 296 sn~~lg~----g~~p~~~l~~~Gv~v~lGtD~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~ 369 (456)
T PRK09229 296 TEANLGD----GIFPAVDYLAAGGRFGIGSDSHV--SIDLVEELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAG 369 (456)
T ss_pred hhhhhcC----CCCCHHHHHHCCCeEEEecCCCC--CCCHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHH
Confidence 9999886 78999999999999999999643 35899999887642 13467889988 689
Q ss_pred HHHHcCC
Q 025169 230 AVKFIFA 236 (257)
Q Consensus 230 ~~~~~~~ 236 (257)
|++++++
T Consensus 370 gA~alg~ 376 (456)
T PRK09229 370 GAQALGR 376 (456)
T ss_pred HHHHhCC
Confidence 9999986
No 35
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.87 E-value=1.3e-20 Score=177.03 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=138.2
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCC-----C-----------CHHHHHHHHHHHH-hhCCCc--eEEEeccCCCCCCCh
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRR-----E-----------TTEAAMETVKLAL-EMRDLG--VVGIDLSGNPTKGEW 98 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~-----~-----------~~e~~~~~~~~~~-~~~~~~--vvg~~l~g~~~~~~~ 98 (257)
+..+++++++++.|+|+.+..++... . .++...+..+... .++..+ .+++.. ..++++++
T Consensus 137 ~~~~a~~~a~~e~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~s~ 215 (455)
T TIGR02022 137 EMAERIAAAAADAGIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAP-HSLRAVTP 215 (455)
T ss_pred hhHHHHHHHHHHhCCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEec-CCCCcCCH
Confidence 44678889999999999887654321 1 1121121222212 222222 334443 34567899
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh----------hHHHHHh---cCC-cEEeecccccHHHHHHHhcCCCcEEecc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE----------EIQSMLD---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICL 164 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~----------~i~~~l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP 164 (257)
+.++++++ |+++|+++++|++|+.... .+....+ +++ ..++||++++++++++|+++|+.+++||
T Consensus 216 e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 294 (455)
T TIGR02022 216 EQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCP 294 (455)
T ss_pred HHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 99999999 8899999999999974321 1111112 344 3689999999999999999999999999
Q ss_pred cccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhC---------------CCCHHHHHHH-HH
Q 025169 165 TSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF---------------SLGRREMFQL-AK 228 (257)
Q Consensus 165 ~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~---------------~ls~~~v~~~-~~ 228 (257)
+||++++. +..|+++|+++||+|+||||+. +..+++++|+.+.... .++.+++++| |.
T Consensus 295 ~sn~~lg~----g~~pi~~l~~~Gv~v~lGTD~~--~~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~ 368 (455)
T TIGR02022 295 TTEANLGD----GIFPAVDFVAAGGRFGIGSDSH--VVIDVAEELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALL 368 (455)
T ss_pred hhhccccC----CCCCHHHHHHCCCeEEEECCCC--CCCCHHHHHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHH
Confidence 99999986 7899999999999999999963 2369999999885431 2456788887 68
Q ss_pred HHHHHcCC
Q 025169 229 SAVKFIFA 236 (257)
Q Consensus 229 n~~~~~~~ 236 (257)
||+++.++
T Consensus 369 ~gAralg~ 376 (455)
T TIGR02022 369 GGAQALGL 376 (455)
T ss_pred HHHHHhCC
Confidence 99999987
No 36
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.86 E-value=1.4e-20 Score=174.79 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=140.0
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCC-H---HHHHHHHHHHHhhCCCce--EEEeccCCCCCCChhcHHHHHHHHHHcCCce
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRET-T---EAAMETVKLALEMRDLGV--VGIDLSGNPTKGEWTTFLPALKFAREQGLQI 115 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~-~---e~~~~~~~~~~~~~~~~v--vg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v 115 (257)
..+++.++.|+|+.+.....+... . ....+..++..++..... .++++.+ .+.++++.++.+++.|+++|+++
T Consensus 124 ~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~e~l~~~~~~A~~~g~~v 202 (418)
T PRK06380 124 IIAKAAEELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHRNEELVTPSIGVQG-IYVANDETYLKAKEIAEKYDTIM 202 (418)
T ss_pred HHHHHHHHhCCeEEEecccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEECCC-CccCCHHHHHHHHHHHHHcCCCE
Confidence 455788999999999877654211 0 111223333344443333 3444333 56788999999999999999999
Q ss_pred eeecCCCCCHh----------hHHHHHhc---CC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccH
Q 025169 116 TLHCGEIPNKE----------EIQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHF 181 (257)
Q Consensus 116 ~~Ha~E~~~~~----------~i~~~l~l---g~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi 181 (257)
++|++|+.... .+.....+ ++ ..++||++++++++++++++|+.+++||.||++++.. +..|+
T Consensus 203 ~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~~---g~~p~ 279 (418)
T PRK06380 203 HMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGTG---GSPPI 279 (418)
T ss_pred EEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhccC---CCCcH
Confidence 99999974211 01111112 33 3689999999999999999999999999999987641 46899
Q ss_pred HHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHHcCC
Q 025169 182 VDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF--------SLGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 182 ~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~--------~ls~~~v~~~-~~n~~~~~~~ 236 (257)
++|+++||+|++|||++++++ .+++++|+.+.... .+++.+++++ |.||++++++
T Consensus 280 ~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~ 344 (418)
T PRK06380 280 PEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVKNERWDASIIKAQEILDFATINAAKALEL 344 (418)
T ss_pred HHHHHCCCeEEEcCCCCcCCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999876655 69999999875421 2788999998 5799999986
No 37
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.86 E-value=7.6e-20 Score=171.54 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=145.4
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCC------C-------CHHHHHHH-HHHHHhhCC---CceEEEeccC-CCCCCChh
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRR------E-------TTEAAMET-VKLALEMRD---LGVVGIDLSG-NPTKGEWT 99 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~------~-------~~e~~~~~-~~~~~~~~~---~~vvg~~l~g-~~~~~~~~ 99 (257)
+.++.++++..+.|+|+.+....... . ..++..+. .++..++.. .+++.+.+++ .++.++++
T Consensus 135 ~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e 214 (451)
T PRK08203 135 DALDDQIEAAREIGMRFHATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRE 214 (451)
T ss_pred chHHHHHHHHHHcCCeEEEecceeecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHH
Confidence 34667788999999999876544310 0 12333322 233334432 2355655553 45678899
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCHhh----------HHHHHhc---CC-cEEeecccccHHHHHHHhcCCCcEEeccc
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNKEE----------IQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~~~----------i~~~l~l---g~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
.++++++.|+++|+++++|++|+..... +....++ ++ .+++||++++++++++|+++|+.+++||+
T Consensus 215 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~ 294 (451)
T PRK08203 215 LMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHCPC 294 (451)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEECcH
Confidence 9999999999999999999998853211 1111122 34 36899999999999999999999999999
Q ss_pred ccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhC-------CCCHHHHHHH-HHHHHHHcCC
Q 025169 166 SNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-------SLGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 166 SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~-------~ls~~~v~~~-~~n~~~~~~~ 236 (257)
||+.++. +..|+++|+++|++|++|||++.+++ .+++.|++.+.... .+++.+++++ +.|++++.++
T Consensus 295 ~~~~l~~----~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg~ 370 (451)
T PRK08203 295 SNMRLAS----GIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQALLLQRLRYGPDAMTAREALEWATLGGARVLGR 370 (451)
T ss_pred Hhhhhcc----CCCCHHHHHHCCCeEEEecCCCccCCCcCHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9998875 67899999999999999999987665 69999998765432 3789999998 5899999987
Q ss_pred C
Q 025169 237 N 237 (257)
Q Consensus 237 ~ 237 (257)
+
T Consensus 371 ~ 371 (451)
T PRK08203 371 D 371 (451)
T ss_pred C
Confidence 5
No 38
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.85 E-value=2.5e-20 Score=173.89 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=141.1
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCH---H-HHHHHHHHHHhhCC--CceEEEecc-CCCCCCChhcHHHHHHHHHHcCCc
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETT---E-AAMETVKLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQ 114 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~---e-~~~~~~~~~~~~~~--~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~ 114 (257)
+..++.++.|+|+.+..+..+...+ + ...+..++...+.+ .+.+...+. ..+..++++.++.+++.|+++|++
T Consensus 126 ~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~ 205 (430)
T PRK06038 126 EVAKAVEESGLRAALSYGMIDLGDDEKGEAELKEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVG 205 (430)
T ss_pred HHHHHHHHhCCeEEEEchhccCCCccchHHHHHHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCc
Confidence 4556778889998887665442221 2 12233344444432 233333333 345678899999999999999999
Q ss_pred eeeecCCCCCHhh----------HHHHHh---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCccc
Q 025169 115 ITLHCGEIPNKEE----------IQSMLD---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH 180 (257)
Q Consensus 115 v~~Ha~E~~~~~~----------i~~~l~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p 180 (257)
+++|+.|+..... +....+ +++ ..++||++++++++++|+++|+.+++||.||+.++. +..|
T Consensus 206 v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P~~n~~~~~----~~~p 281 (430)
T PRK06038 206 IHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNPVSNMKLAS----GIAP 281 (430)
T ss_pred EEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEEChHHhhhhcc----CCCC
Confidence 9999999843211 111111 344 357999999999999999999999999999998875 6789
Q ss_pred HHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHHcCCC
Q 025169 181 FVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 181 i~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~--------~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+++|+++||+|++|||++..++ .|++++|+.+... .++++.+++++ +.|++++++++
T Consensus 282 ~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~ 348 (430)
T PRK06038 282 VPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHKVNTMDPTALPARQVLEMATVNGAKALGIN 348 (430)
T ss_pred HHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHhHHHHHHhCCC
Confidence 9999999999999999876654 6999999887532 25789999998 57999999874
No 39
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.85 E-value=4.6e-20 Score=171.64 Aligned_cols=190 Identities=21% Similarity=0.162 Sum_probs=144.2
Q ss_pred hHhhcccCCCcEEEEEEEeeCC-CC---H--HH-HHHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRR-ET---T--EA-AMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~-~~---~--e~-~~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
...+++.+.|+|+.+...+... ++ . .+ ..+..++...+...+.+.+++. ..+++++++.++.+.++++++|+
T Consensus 133 ~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 212 (421)
T COG0402 133 AAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGL 212 (421)
T ss_pred HHHHHHHHhCCeeEeeeccccCCCCcccccchHHHHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCC
Confidence 4567889999999998887763 11 1 11 1224444555555443333333 34568899999999999999999
Q ss_pred ceeeecCCCCCHhh-HHH--------HH-h---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcc
Q 025169 114 QITLHCGEIPNKEE-IQS--------ML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIH 179 (257)
Q Consensus 114 ~v~~Ha~E~~~~~~-i~~--------~l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~ 179 (257)
++++|++|+..+.+ ..+ .+ . ++. ..+.||++++++++++++++|+.+++||+||+++++ +..
T Consensus 213 ~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~s----G~~ 288 (421)
T COG0402 213 PVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGS----GIA 288 (421)
T ss_pred ceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccC----CCC
Confidence 99999999964321 111 11 1 232 468999999999999999999999999999999998 889
Q ss_pred cHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhCC---------CCHHHHHHH-HHHHHHHcCC
Q 025169 180 HFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFS---------LGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 180 pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~~---------ls~~~v~~~-~~n~~~~~~~ 236 (257)
|+++++++|+++++|||+.++++ .|+++||+.+..... ... +++.+ |.||+++..+
T Consensus 289 p~~~~~~~gv~v~~gTD~~~~~~~~d~l~~~~~a~~l~~~~~~~~~~~~~~-~~l~~aT~~gA~alg~ 355 (421)
T COG0402 289 PVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQKLAGGLLAAQLPG-EALDMATLGGAKALGL 355 (421)
T ss_pred CHHHHHHcCCCEEEecCCccccChHHHHHHHHHHHHHHHhhcCCCcccchH-HHHHHHHhhHHHHcCC
Confidence 99999999999999999999988 799999999987532 111 36776 6899999985
No 40
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.84 E-value=1.4e-19 Score=169.40 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=141.9
Q ss_pred HhhcccCCCcEEEEEEEeeCC-----CCHHHH-HHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCce
Q 025169 43 ACNGTRGKKIYVRLLLSIDRR-----ETTEAA-METVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQI 115 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~-----~~~e~~-~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v 115 (257)
.++++.+.|+|+.+...+... .++++. .+..+...+|++.+.+.+.++ ..++.++++.++++++.|+++|+++
T Consensus 139 ~~~~~~~~G~R~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v 218 (443)
T PRK09045 139 AAEAAHQAGMRAQIGMPVLDFPTAWASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPI 218 (443)
T ss_pred HHHHHHHcCCeEEEecccccCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 456778889998877655431 123332 333444445554444444444 3456778999999999999999999
Q ss_pred eeecCCCCCHhhHHHHH------------h---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcc
Q 025169 116 TLHCGEIPNKEEIQSML------------D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIH 179 (257)
Q Consensus 116 ~~Ha~E~~~~~~i~~~l------------~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~ 179 (257)
++|+.|+.. .+..++ + +++ .++.||++++++++++++++|+.+++||+||+.++. +..
T Consensus 219 ~~H~~e~~~--~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~P~~~~~~~~----~~~ 292 (443)
T PRK09045 219 HIHLHETAQ--EIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHCPESNLKLAS----GFC 292 (443)
T ss_pred EEeecCcHH--HHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEECHHHHhhhcc----CCC
Confidence 999998642 221111 1 233 357899999999999999999999999999987765 678
Q ss_pred cHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 180 HFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 180 pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~--------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
|+++|+++|++|++|||++.+++ .++++|++.+... .++++.+++++ +.|++++.++++
T Consensus 293 ~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~ 361 (443)
T PRK09045 293 PVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKAVAGDATALPAHTALRMATLNGARALGLDD 361 (443)
T ss_pred cHHHHHHCCCeEEEecCCCCCCCCccHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCCC
Confidence 99999999999999999987665 6999999876532 25899999998 579999998764
No 41
>PRK08204 hypothetical protein; Provisional
Probab=99.84 E-value=1.9e-19 Score=168.69 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=142.4
Q ss_pred hhhhHhhcccCCCcEEEEEEEeeCCCC------H-HHHHHHHHHHHhhCC--CceEEEecc-CCCCCCChhcHHHHHHHH
Q 025169 39 NMNDACNGTRGKKIYVRLLLSIDRRET------T-EAAMETVKLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~~~~r~~~------~-e~~~~~~~~~~~~~~--~~vvg~~l~-g~~~~~~~~~~~~~~~~A 108 (257)
..+..++++.+.|+|..+.....+..+ + +...+...+..++.. +..+..++. ..+..++++.++++++.|
T Consensus 131 ~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A 210 (449)
T PRK08204 131 HADAAIRGLAEAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLA 210 (449)
T ss_pred HHHHHHHHHHHcCCeEEEEccccCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHH
Confidence 344566788889999877655443211 1 112222222233332 223333333 224556788999999999
Q ss_pred HHcCCceeeecCCCCC---HhhHHHHHhcC---C-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccH
Q 025169 109 REQGLQITLHCGEIPN---KEEIQSMLDFL---P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHF 181 (257)
Q Consensus 109 ~~~gl~v~~Ha~E~~~---~~~i~~~l~lg---~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi 181 (257)
++.|+++++|+.|... ...+..+.+.| + ..|+||++++++++++|+++|+.+++||.+|+.++. +..|+
T Consensus 211 ~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~----~~~~~ 286 (449)
T PRK08204 211 RELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMGH----GYPVT 286 (449)
T ss_pred HHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhcC----CCCcH
Confidence 9999999999988732 22344444444 3 369999999999999999999999999999988765 67899
Q ss_pred HHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh-------------------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 182 VDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-------------------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 182 ~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~-------------------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
++|+++||+|++|||.+...+.+++.+++.+... .++++.+++++ |.||++++++++
T Consensus 287 ~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~ 363 (449)
T PRK08204 287 GRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLED 363 (449)
T ss_pred HHHHhcCCceeeccccCCCCCcCHHHHHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCC
Confidence 9999999999999998655567999999887642 35889999998 589999999865
No 42
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.81 E-value=4.3e-18 Score=146.65 Aligned_cols=222 Identities=22% Similarity=0.252 Sum_probs=156.0
Q ss_pred HHHHHHHHhhc-cceeeeeccCccccccCCCchhhhhhHhhcccCC-CcEEEEEEEeeCCCCH--H-HHHHHHHHHHhhC
Q 025169 6 YMDAVVEGLRA-VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK-KIYVRLLLSIDRRETT--E-AAMETVKLALEMR 80 (257)
Q Consensus 6 y~~~~~~~~~~-v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a~~~~-gir~~li~~~~r~~~~--e-~~~~~~~~~~~~~ 80 (257)
....+.+.+++ |.++..+..+...... .+.++...++.++. |++..++.++.+..++ + ......+....+.
T Consensus 37 ~~~~~~~~~~~Gvttv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 112 (275)
T cd01292 37 TLRALEALLAGGVTTVVDMGSTPPPTTT----KAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGL 112 (275)
T ss_pred HHHHHHHHHhcCceEEEeeEeecCcccc----chHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHHHHHHHHH
Confidence 33444455553 7777766654322211 34555666666666 8999988887764321 1 1122233333333
Q ss_pred CCceEEEeccCCCCC--CChhcHHHHHHHHHHcCCceeeecCCCCCH-hhHHHHHhc----CCcEEeecccccHHHHHHH
Q 025169 81 DLGVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDF----LPQRIGHACCFEEEEWRKL 153 (257)
Q Consensus 81 ~~~vvg~~l~g~~~~--~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~~i~~~l~l----g~~ri~Hg~~l~~~~~~~l 153 (257)
+.+++|+++.+.... .+++.++++++.|+++|+++++|++|.... ..+.+.++. +...++|+...++++++++
T Consensus 113 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 192 (275)
T cd01292 113 ELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELL 192 (275)
T ss_pred hcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHH
Confidence 235788887664433 267899999999999999999999987542 123333432 3468999999999999999
Q ss_pred hcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCC-CCCChHHHHHHHHHhCC--CCHHHHHHH-HHH
Q 025169 154 KSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV-FSTSVSREYDLAASAFS--LGRREMFQL-AKS 229 (257)
Q Consensus 154 ~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~-~~~~l~~E~~~a~~~~~--ls~~~v~~~-~~n 229 (257)
+++|+.+++||.+|...+ .......|+.++++.|+++++|||.+.. ...++..+++.+....+ ++..+++++ +.|
T Consensus 193 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~n 271 (275)
T cd01292 193 KEAGVSLEVCPLSNYLLG-RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLRLGLSLEEALRLATIN 271 (275)
T ss_pred HHcCCeEEECCccccccc-CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcc
Confidence 999999999999998762 1112567999999999999999999876 34789999998877544 699999998 678
Q ss_pred HHH
Q 025169 230 AVK 232 (257)
Q Consensus 230 ~~~ 232 (257)
+++
T Consensus 272 ~a~ 274 (275)
T cd01292 272 PAR 274 (275)
T ss_pred ccC
Confidence 875
No 43
>PRK06886 hypothetical protein; Validated
Probab=99.80 E-value=4.4e-18 Score=153.02 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCChhcHHHHHHHHHHcCCceeeecCCCCCHh--hHH----HHHhc---CCcEEeecccccHH-------HHHHHhcCCC
Q 025169 95 KGEWTTFLPALKFAREQGLQITLHCGEIPNKE--EIQ----SMLDF---LPQRIGHACCFEEE-------EWRKLKSSKI 158 (257)
Q Consensus 95 ~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~--~i~----~~l~l---g~~ri~Hg~~l~~~-------~~~~l~~~~i 158 (257)
..+.+.+..+++.|+++|+++++|+.|+.++. .+. ..++. |...++||+.+++. ++++|+++|+
T Consensus 158 ~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~~~L~~~~~~~~~~~i~~La~agi 237 (329)
T PRK06886 158 GRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHGISIGAHSKEYRYRLYQKMREADM 237 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEeccccCcChhhHHHHHHHHHHcCC
Confidence 34568899999999999999999999986552 222 22232 44568999999654 5999999999
Q ss_pred cEEecccccceecccc-----CCCcccHHHHHhcCCCEEecCCCCCC----CC-CChHHHHHHHHHhCCC-CHHHHHHH-
Q 025169 159 PVEICLTSNIRTETIS-----SLDIHHFVDLYKAQHPLVLCTDDSGV----FS-TSVSREYDLAASAFSL-GRREMFQL- 226 (257)
Q Consensus 159 ~v~~cP~SN~~l~~~~-----~~~~~pi~~l~~~Gv~v~lgTD~~~~----~~-~~l~~E~~~a~~~~~l-s~~~v~~~- 226 (257)
.|++||.||++++... ..+..|+++|+++||+|++|||+... ++ .||++++++++...++ +..++++|
T Consensus 238 ~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~~~~~~~~~l~ma 317 (329)
T PRK06886 238 MVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGCRFYDLDEMVNIA 317 (329)
T ss_pred eEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998644311 23688999999999999999998642 34 7999999999876654 57889998
Q ss_pred HHHHHHHcCCC
Q 025169 227 AKSAVKFIFAN 237 (257)
Q Consensus 227 ~~n~~~~~~~~ 237 (257)
|.||+++++++
T Consensus 318 T~~gAraLgl~ 328 (329)
T PRK06886 318 SINGRKVLGLE 328 (329)
T ss_pred hhhHHHHhCCC
Confidence 57999999875
No 44
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.79 E-value=6.9e-18 Score=155.55 Aligned_cols=191 Identities=20% Similarity=0.180 Sum_probs=138.5
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCH------HHHHHHHHHHHhhCC---Cc-eEEEeccCCCCCCChhcHHHHHHHHHHc
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETT------EAAMETVKLALEMRD---LG-VVGIDLSGNPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~------e~~~~~~~~~~~~~~---~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~ 111 (257)
...++.++.|+|+.+..++.+..+. +...+..+....+.. +. .+++++. .+..++++.++++++.|+++
T Consensus 128 ~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~l~~~~~~A~~~ 206 (411)
T cd01298 128 AVAEAAEELGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALAPH-APYTCSDELLREVAELAREY 206 (411)
T ss_pred HHHHHHHHhCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCC-CCccCCHHHHHHHHHHHHHc
Confidence 3445566679998888777663221 122333344444432 21 2333332 34456889999999999999
Q ss_pred CCceeeecCCCCCHh----------hHHHHHhcC---C-cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCC
Q 025169 112 GLQITLHCGEIPNKE----------EIQSMLDFL---P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLD 177 (257)
Q Consensus 112 gl~v~~Ha~E~~~~~----------~i~~~l~lg---~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~ 177 (257)
|+++++|+.|..... .+..+.+.| + .++.||++++++++++++++|+.+++||.+|..++. +
T Consensus 207 g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~p~~~~~~~~----~ 282 (411)
T cd01298 207 GVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHNPASNMKLAS----G 282 (411)
T ss_pred CCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEChHHhhhhhh----C
Confidence 999999998874321 111112222 3 379999999999999999999999999999987754 5
Q ss_pred cccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh--------CCCCHHHHHHHH-HHHHHHcCCC
Q 025169 178 IHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQLA-KSAVKFIFAN 237 (257)
Q Consensus 178 ~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~--------~~ls~~~v~~~~-~n~~~~~~~~ 237 (257)
..|+++++++|+++++|||++..++ .+++.|++.+... .++++.++++++ .|+++.++++
T Consensus 283 ~~~~~~~~~~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~ 352 (411)
T cd01298 283 IAPVPEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLD 352 (411)
T ss_pred CCCHHHHHHCCCcEEEeCCCCccCCCcCHHHHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHHHHhCCc
Confidence 6799999999999999999987654 6899998876543 258999999984 7999999876
No 45
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.78 E-value=1.6e-17 Score=155.54 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=138.6
Q ss_pred hHhhcccCCCcEEEEEEEeeCC--C-------CH-HHHHHHHHHHHhhCCC--ceEEEecc-CCCCCCChhcHHHHHHHH
Q 025169 42 DACNGTRGKKIYVRLLLSIDRR--E-------TT-EAAMETVKLALEMRDL--GVVGIDLS-GNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~--~-------~~-e~~~~~~~~~~~~~~~--~vvg~~l~-g~~~~~~~~~~~~~~~~A 108 (257)
..++++.+.|+|+.+..++.+. . .. +...+..++...|... +.+...++ ..+..++++.++++++.|
T Consensus 129 ~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 208 (445)
T PRK07228 129 SAFEAAGESGIRAVLGKVMMDYGDDVPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLA 208 (445)
T ss_pred HHHHHHHHcCCeEEEecceecCCcCCCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4557777889988776555441 0 11 2234445555555321 22222232 234467889999999999
Q ss_pred HHcCCceeeecCCCCCHh-hHHHH--------H-h---cCC-cEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 109 REQGLQITLHCGEIPNKE-EIQSM--------L-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 109 ~~~gl~v~~Ha~E~~~~~-~i~~~--------l-~---lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+++|+++++|+.|+.... .+... + . +++ ..++||++++++++++++++|+.+++||++|+.++.
T Consensus 209 ~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P~~~~~~~~-- 286 (445)
T PRK07228 209 DEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCPSSNLKLAS-- 286 (445)
T ss_pred HHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEChHHhhhccc--
Confidence 999999999998874321 11110 1 1 232 578999999999999999999999999999998765
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~--------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+..|+++++++|+++++|||++...+ .+++.+++.+... ..++..+++++ +.|+++..++++
T Consensus 287 --~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~~~ 358 (445)
T PRK07228 287 --GIAPVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQKVDRLGPTAMPARTVFEMATLGGAKAAGFED 358 (445)
T ss_pred --ccCcHHHHHHCCCeEEEcCCCCccCCCccHHHHHHHHHHHhhhccCCCcccCHHHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999876554 6899999876532 24789999998 579999998754
No 46
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.77 E-value=2.4e-17 Score=151.26 Aligned_cols=168 Identities=20% Similarity=0.173 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhCCCceEE-EeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCH--hhH----HHHHhcCC---
Q 025169 67 EAAMETVKLALEMRDLGVVG-IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEI----QSMLDFLP--- 136 (257)
Q Consensus 67 e~~~~~~~~~~~~~~~~vvg-~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i----~~~l~lg~--- 136 (257)
+++.+.++.+.+...+ +++ +... ....++++.++++++.|+++|+++++|+.|.... ..+ ..+.+.|.
T Consensus 158 ~~~~~~v~~~~~~g~~-~~~~~~~~-~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~~~ 235 (398)
T cd01293 158 PGGEELMREALKMGAD-VVGGIPPA-EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQGR 235 (398)
T ss_pred CCHHHHHHHHHHhCCC-EEeCCCCC-cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCCCC
Confidence 3455566655544332 333 2222 2345678999999999999999999999988643 122 22223453
Q ss_pred cEEeecccccH-------HHHHHHhcCCCcEEecccccceecccc-----CCCcccHHHHHhcCCCEEecCCCCC----C
Q 025169 137 QRIGHACCFEE-------EEWRKLKSSKIPVEICLTSNIRTETIS-----SLDIHHFVDLYKAQHPLVLCTDDSG----V 200 (257)
Q Consensus 137 ~ri~Hg~~l~~-------~~~~~l~~~~i~v~~cP~SN~~l~~~~-----~~~~~pi~~l~~~Gv~v~lgTD~~~----~ 200 (257)
..++||+++++ +++++|+++|+.+++||+||+.+.... ..+..|+++|+++||+|++|||++. .
T Consensus 236 ~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~ 315 (398)
T cd01293 236 VTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAAGVNVALGSDNVRDPWYP 315 (398)
T ss_pred EEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCcHHHHHHCCCeEEECCCCCCCCCcC
Confidence 47899998852 459999999999999999998773210 1256899999999999999999743 2
Q ss_pred CC-CChHHHHHHHHHhCCCCH----HHHHHH-HHHHHHHcCC
Q 025169 201 FS-TSVSREYDLAASAFSLGR----REMFQL-AKSAVKFIFA 236 (257)
Q Consensus 201 ~~-~~l~~E~~~a~~~~~ls~----~~v~~~-~~n~~~~~~~ 236 (257)
++ .+++++|+.++...+++. .+++++ |.|+++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~ 357 (398)
T cd01293 316 FGSGDMLEVANLAAHIAQLGTPEDLALALDLITGNAARALGL 357 (398)
T ss_pred CCCCCHHHHHHHHHHHHcCCChhhHHHHHHhcChhhhhhcCC
Confidence 33 589999998877677743 568887 5899999986
No 47
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.75 E-value=3.1e-17 Score=155.38 Aligned_cols=192 Identities=15% Similarity=0.142 Sum_probs=137.9
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCC-------------CC----HHHHHHHHHHHHhhCCC--ceEEEecc-CCCCCCChh
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRR-------------ET----TEAAMETVKLALEMRDL--GVVGIDLS-GNPTKGEWT 99 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~-------------~~----~e~~~~~~~~~~~~~~~--~vvg~~l~-g~~~~~~~~ 99 (257)
+++++++.++.|+|+.+...+... .. .+...+..++..++... ..++..++ ..+++++++
T Consensus 142 ~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e 221 (488)
T PRK06151 142 FAAAAEAAGRLGLRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVD 221 (488)
T ss_pred HHHHHHHHHHcCCeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHH
Confidence 455667788899998887543310 00 11123344444444332 34444443 345568899
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCHh-hHH---------HHHhcC---C-cEEeecccccH---------HHHHHHhcC
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNKE-EIQ---------SMLDFL---P-QRIGHACCFEE---------EEWRKLKSS 156 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~~-~i~---------~~l~lg---~-~ri~Hg~~l~~---------~~~~~l~~~ 156 (257)
.++++++.|+++|+++++|+.|+.... .+. ...+.| + .+++||+++++ +++++|+++
T Consensus 222 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~ 301 (488)
T PRK06151 222 LLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAEH 301 (488)
T ss_pred HHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHhc
Confidence 999999999999999999999864221 111 111223 2 46899999999 999999999
Q ss_pred CCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh--------CCCCHHHHHHH-H
Q 025169 157 KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------FSLGRREMFQL-A 227 (257)
Q Consensus 157 ~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~--------~~ls~~~v~~~-~ 227 (257)
|+.+++||++|..++. +..|+++|+++|++|++|||+. ..+++++++.+... ..+++.+++++ +
T Consensus 302 g~~v~~~P~~~~~~g~----~~~p~~~l~~~Gv~v~lGtD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT 374 (488)
T PRK06151 302 GVSIVHCPLVSARHGS----ALNSFDRYREAGINLALGTDTF---PPDMVMNMRVGLILGRVVEGDLDAASAADLFDAAT 374 (488)
T ss_pred CCEEEECchhhhhhcc----ccccHHHHHHCCCcEEEECCCC---CccHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 9999999999988775 6789999999999999999973 35888888776532 13689999887 5
Q ss_pred HHHHHHcCCCh
Q 025169 228 KSAVKFIFANG 238 (257)
Q Consensus 228 ~n~~~~~~~~~ 238 (257)
.|++++.++++
T Consensus 375 ~~~A~~lg~~~ 385 (488)
T PRK06151 375 LGGARALGRDD 385 (488)
T ss_pred HHHHHHhCCCC
Confidence 89999998753
No 48
>PRK14085 imidazolonepropionase; Provisional
Probab=99.74 E-value=1.8e-17 Score=152.47 Aligned_cols=140 Identities=12% Similarity=0.105 Sum_probs=116.4
Q ss_pred CCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 94 TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 94 ~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
...+++.++++++.|++.|+++++|+.+......+..++++|..+++||++++++++++|+++|+.+++||.+|+..+.
T Consensus 202 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~~~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~- 280 (382)
T PRK14085 202 GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGAASVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQ- 280 (382)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCCCcHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCC-
Confidence 3567899999999999999999999987644445777888999999999999999999999999999999999987654
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCC--CCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVF--STSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~--~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+..|+++|+++||+|++|||++... +..+..++..+....++++.+++++ +.|++++++++
T Consensus 281 ---~~~~~~~l~~aGv~v~lgsD~~~~~~~~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 281 ---PYPDARRLLDAGVTVALASDCNPGSSYTSSMPFCVALAVRQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred ---CCchHHHHHHCCCcEEEEeCCCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 5689999999999999999975322 2334444445555578999999997 58999999875
No 49
>PRK09356 imidazolonepropionase; Validated
Probab=99.74 E-value=3.4e-17 Score=151.41 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=120.9
Q ss_pred eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEec
Q 025169 84 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 84 vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
+.+++..+.+..++++.++++++.|+++|+++++|+.|......+..+..+|..++.|+++++++++++++++|+.+++|
T Consensus 207 ~~~i~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~la~~g~~~~~~ 286 (406)
T PRK09356 207 ADAVDVFCETGAFSVEQSERVLEAAKALGLPVKIHAEQLSNLGGAELAAEYGALSADHLEYLDEAGIAAMAEAGTVAVLL 286 (406)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEEecccCCCHHHHHHHcCCcEehHhhcCCHHHHHHHHHhCCEEEEC
Confidence 33333334445568899999999999999999999998654445555556788899999999999999999999999999
Q ss_pred ccccceeccccCCCcccHHHHHhcCCCEEecCCCCC-CCC-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 164 LTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG-VFS-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 164 P~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~-~~~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
|.+|+.++. .+.+|+++|+++|+++++|||++. .+. .++..++..+....+++..+++++ +.|++++.++++
T Consensus 287 P~~~~~l~~---~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~ 361 (406)
T PRK09356 287 PGAFYFLRE---TQYPPARLLRDAGVPVALATDFNPGSSPTESLLLAMNMACTLFRLTPEEALAAVTINAARALGRQD 361 (406)
T ss_pred ccchhhcCc---ccCchHHHHHHCCCeEEEeCCCCCCCChhHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 999988753 156899999999999999999743 222 355555555555578999999887 589999999854
No 50
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=3.9e-17 Score=146.89 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=134.3
Q ss_pred HhhcccCCCcEEEEEEEeeCCC--CH----HHHHHHHHHHHhh-------CCC---ceE--EEeccCCCCCCChhcHHHH
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRE--TT----EAAMETVKLALEM-------RDL---GVV--GIDLSGNPTKGEWTTFLPA 104 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~--~~----e~~~~~~~~~~~~-------~~~---~vv--g~~l~g~~~~~~~~~~~~~ 104 (257)
+++++.+.|.|+.+..+.+... ++ +..++.++...++ +.. .+| +|++ .|+...+...
T Consensus 151 l~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~si~~t~~~i~~~~~~~~~~~~~~vt~~fa~-----~c~k~v~~~l 225 (439)
T KOG3968|consen 151 LARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEESIESTEDLIPKLEKLKREKVNPIVTPRFAA-----SCSKGVFEEL 225 (439)
T ss_pred HHHHHHHhCCceeeeeehhccCCCCCCccchhHHHHHHHHHHHHHHHHhhccCCCCCcccccccC-----CCcchhHHHH
Confidence 4466778899998887766532 21 2223333222222 111 222 3333 3455677888
Q ss_pred HHHHHHcCCceeeecCCCCCHh-hH----------HHHHh----cCC-cEEeecccccHHHHHHHhcCCCcEEecccccc
Q 025169 105 LKFAREQGLQITLHCGEIPNKE-EI----------QSMLD----FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 105 ~~~A~~~gl~v~~Ha~E~~~~~-~i----------~~~l~----lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
..+|+..+++++.|..|...+- .+ .++++ +++ ..++|+++++++++++|+++|..++|||+||.
T Consensus 226 ~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svshCP~Sn~ 305 (439)
T KOG3968|consen 226 SKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVSHCPTSNS 305 (439)
T ss_pred HHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceEECCcchh
Confidence 8889999999999999874321 11 11222 453 56899999999999999999999999999999
Q ss_pred eeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh----------CCCCHHHHHHHH-HHHHHHcCCC
Q 025169 169 RTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA----------FSLGRREMFQLA-KSAVKFIFAN 237 (257)
Q Consensus 169 ~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~----------~~ls~~~v~~~~-~n~~~~~~~~ 237 (257)
.|++ +.+|+++|++.||.|+||||..+ .++..+|+.+... .++|.++++.+| .||+++.+.+
T Consensus 306 ~L~s----G~~~vr~lL~~~v~VgLGtDv~~---~s~l~a~r~A~~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d 378 (439)
T KOG3968|consen 306 ILGS----GIPRVRELLDIGVIVGLGTDVSG---CSILNALRQAMPMSMHLACVLDVMKLSMEEALYLATIGGAKALGRD 378 (439)
T ss_pred hhcc----CCccHHHHHhcCceEeecCCccc---cccHHHHHHHHHHHHHHHhccCcccCCHHHHHHHHhccchhhccCC
Confidence 9998 89999999999999999999765 4677777766642 479999999985 7999999988
Q ss_pred hH
Q 025169 238 GR 239 (257)
Q Consensus 238 ~~ 239 (257)
+.
T Consensus 379 ~~ 380 (439)
T KOG3968|consen 379 DT 380 (439)
T ss_pred Cc
Confidence 73
No 51
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.72 E-value=2e-16 Score=142.88 Aligned_cols=169 Identities=17% Similarity=0.104 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCC------C---CCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcC
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGN------P---TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 135 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~------~---~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg 135 (257)
+++++.+.++...+...+. +.+-+.|. . ...+++.++++++.|+++|+++++|+.+ ...+..+++.|
T Consensus 118 ~~~~~~~~v~~~~~~G~~~-iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~l~~G 193 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQ-IKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRAIRAG 193 (342)
T ss_pred CHHHHHHHHHHHHHhCCCE-EEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcC
Confidence 4677777776665544332 22222111 1 1357789999999999999999999964 45667788899
Q ss_pred CcEEeecccccHHHHHHHhcCCCcEEecccccceec------ccc-----------CCCcccHHHHHhcCCCEEecCCCC
Q 025169 136 PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTE------TIS-----------SLDIHHFVDLYKAQHPLVLCTDDS 198 (257)
Q Consensus 136 ~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~------~~~-----------~~~~~pi~~l~~~Gv~v~lgTD~~ 198 (257)
.++|+||..++++++++|+++|+.+++||.++..+. ..+ .....|+++|+++||+|++|||.+
T Consensus 194 ~~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~ 273 (342)
T cd01299 194 VDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAG 273 (342)
T ss_pred CCEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 999999999999999999999999999999875420 000 013468999999999999999987
Q ss_pred C--CCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 199 G--VFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 199 ~--~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
. .++.++..|+..+.. .++++.+++++ +.|+++..++++
T Consensus 274 ~~~~~~~~~~~e~~~~~~-~~~~~~~al~~~T~~~a~~~g~~~ 315 (342)
T cd01299 274 FPVPPHGWNARELELLVK-AGGTPAEALRAATANAAELLGLSD 315 (342)
T ss_pred CCCCchhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCccC
Confidence 5 334578899988765 68999999998 579999998764
No 52
>PRK07572 cytosine deaminase; Validated
Probab=99.68 E-value=8.8e-16 Score=143.18 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=106.4
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHh--hH----HHHHhcCC---cEEeecccccH-------HHHHHHhcCCCcEE
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKE--EI----QSMLDFLP---QRIGHACCFEE-------EEWRKLKSSKIPVE 161 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~--~i----~~~l~lg~---~ri~Hg~~l~~-------~~~~~l~~~~i~v~ 161 (257)
.+.++.+++.|+++|+++++|+.|+.... .+ ....+.|. ..++||+++++ +++++|+++|+.++
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv 269 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAI 269 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 38899999999999999999999886532 11 12222344 34699988754 67999999999999
Q ss_pred ecccccceecccc-----CCCcccHHHHHhcCCCEEecCCCCC----CCC-CChHHHHHHHHHhCCCCHH----HHHHH-
Q 025169 162 ICLTSNIRTETIS-----SLDIHHFVDLYKAQHPLVLCTDDSG----VFS-TSVSREYDLAASAFSLGRR----EMFQL- 226 (257)
Q Consensus 162 ~cP~SN~~l~~~~-----~~~~~pi~~l~~~Gv~v~lgTD~~~----~~~-~~l~~E~~~a~~~~~ls~~----~v~~~- 226 (257)
+||+||++++... ..+..|+++|+++||+|++|||++. .++ .+++++++.+....+++.. +++++
T Consensus 270 ~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~a 349 (426)
T PRK07572 270 ANPLINITLQGRHDTYPKRRGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQMTGQDAMRACFDAV 349 (426)
T ss_pred ECchhhhhhcCCCCCCCCCCCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 9999999775211 1256799999999999999999853 233 6999988886665566543 44456
Q ss_pred HHHHHHHcCCCh
Q 025169 227 AKSAVKFIFANG 238 (257)
Q Consensus 227 ~~n~~~~~~~~~ 238 (257)
|.|+++++++++
T Consensus 350 T~~~A~~lgl~~ 361 (426)
T PRK07572 350 TVNPARIMGLEG 361 (426)
T ss_pred hcchHHhhCCCC
Confidence 589999998864
No 53
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.57 E-value=4.2e-14 Score=132.36 Aligned_cols=142 Identities=13% Similarity=0.182 Sum_probs=109.5
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhh--H----HHHHhc---CCcEEeeccccc-------HHHHHHHhcCCCcE
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEE--I----QSMLDF---LPQRIGHACCFE-------EEEWRKLKSSKIPV 160 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~--i----~~~l~l---g~~ri~Hg~~l~-------~~~~~~l~~~~i~v 160 (257)
+.+.+.++++.|+++|+++.+|++|...+.. + ..+.+. +..+++||+.++ ++++++|+++|+.+
T Consensus 210 ~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~v 289 (438)
T PRK07583 210 LDAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAI 289 (438)
T ss_pred HHHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeE
Confidence 4478999999999999999999998765421 2 122233 346799999875 47899999999999
Q ss_pred Eecccccceecccc------CCCcccHHHHHhcCCCEEecCCCCC----CCC-CChHHHHHHHHHhC--CCCHHHHHHH-
Q 025169 161 EICLTSNIRTETIS------SLDIHHFVDLYKAQHPLVLCTDDSG----VFS-TSVSREYDLAASAF--SLGRREMFQL- 226 (257)
Q Consensus 161 ~~cP~SN~~l~~~~------~~~~~pi~~l~~~Gv~v~lgTD~~~----~~~-~~l~~E~~~a~~~~--~ls~~~v~~~- 226 (257)
++||++|+.+.... ..+..|+++|+++||+|++|||+.. .++ .++++.+..+.... +.+..+++++
T Consensus 290 v~~P~~~~~l~~~~~~~~p~~~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a~~~~~~~~~~~~al~~~ 369 (438)
T PRK07583 290 VSLPMCNLYLQDRQPGRTPRWRGVTLVHELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREAVRILHLDHPYDDWPAAV 369 (438)
T ss_pred EECcchhhhhcCCCcCCCCCCCCcchHHHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999998765321 1245789999999999999999742 223 58888888776543 5788899887
Q ss_pred HHHHHHHcCCCh
Q 025169 227 AKSAVKFIFANG 238 (257)
Q Consensus 227 ~~n~~~~~~~~~ 238 (257)
+.|+++..++++
T Consensus 370 T~~~A~~lg~~~ 381 (438)
T PRK07583 370 TTTPADIMGLPD 381 (438)
T ss_pred hHHHHHHcCCCC
Confidence 589999998764
No 54
>PRK05985 cytosine deaminase; Provisional
Probab=99.53 E-value=2.6e-13 Score=125.18 Aligned_cols=138 Identities=10% Similarity=0.078 Sum_probs=103.7
Q ss_pred CCCCChhcHHHHHHHHHHcCCceeeecCCCCCH--hhHHHHH----hcCC---cEEeecccc---cH----HHHHHHhcC
Q 025169 93 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSML----DFLP---QRIGHACCF---EE----EEWRKLKSS 156 (257)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i~~~l----~lg~---~ri~Hg~~l---~~----~~~~~l~~~ 156 (257)
...++.+.+.++++.|+++|+++++|+.|..+. ..+...+ .+|. ..++|+..+ ++ +++++++++
T Consensus 185 ~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~ 264 (391)
T PRK05985 185 IDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA 264 (391)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc
Confidence 445677899999999999999999999998653 2222222 3443 478999865 33 558999999
Q ss_pred CCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC----CCC-CChHHHHHHHHHhCCCC----HHHHHHH-
Q 025169 157 KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG----VFS-TSVSREYDLAASAFSLG----RREMFQL- 226 (257)
Q Consensus 157 ~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~----~~~-~~l~~E~~~a~~~~~ls----~~~v~~~- 226 (257)
|+.+++||.+. . +..|+++|+++||+|++|||++. .++ .+++++++.++...++. ..+++++
T Consensus 265 g~~v~~~~~~~----~----~~~~~~~l~~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 336 (391)
T PRK05985 265 GVAIMTNAPGS----V----PVPPVAALRAAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSGFRTDDELAAALDCV 336 (391)
T ss_pred CCeEEEeCCCC----C----CCCCHHHHHHCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHH
Confidence 99999996542 2 56899999999999999999864 223 58999888766544543 3578887
Q ss_pred HHHHHHHcCCCh
Q 025169 227 AKSAVKFIFANG 238 (257)
Q Consensus 227 ~~n~~~~~~~~~ 238 (257)
+.|+++++++++
T Consensus 337 T~~~A~~lg~~~ 348 (391)
T PRK05985 337 THGGARALGLED 348 (391)
T ss_pred cchhHHHhCCcc
Confidence 479999998764
No 55
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.9e-14 Score=135.34 Aligned_cols=131 Identities=24% Similarity=0.312 Sum_probs=111.0
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.+..||||.+..+.+..+. +-++.|.||+.+ .|-+.-+.-=.+|++.+.|.||..+ +.++...|+.+++++|++
T Consensus 587 f~LRphCgeag~~~hLvsaf-Lla~gIshg~Llrk~PvLQYLyYL~QIpIamSPLSnnsl--fl~Y~kNPf~~~f~~GL~ 663 (768)
T KOG1096|consen 587 FTLRPHCGEAGDIEHLVSAF-LLAHGISHGILLRKVPVLQYLYYLAQIPIAMSPLSNNSL--FLSYHKNPFPEYFKRGLN 663 (768)
T ss_pred EEecCCCCCcCCHHHHHHHH-HHhccccchhhhccchHHHHHHHHHhcchhhcccccccc--ccccccCchHHHHHhhce
Confidence 45778999998877766555 445559999988 3444333345679999999999865 345688999999999999
Q ss_pred EEecCCCCCCCC---CChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 025169 191 LVLCTDDSGVFS---TSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE 246 (257)
Q Consensus 191 v~lgTD~~~~~~---~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~ 246 (257)
|+|+||+|..|+ ..+.+||..|+..++++..|+++++|||+-.|+.+.+.|..|++
T Consensus 664 VSLSTddpLqf~yTkEPLiEEYSIAAqiykLss~DmCELaRNSVlqSGfs~~~K~hWlG 722 (768)
T KOG1096|consen 664 VSLSTDDPLQFHYTKEPLIEEYSIAAQVYKLSSCDMCELARNSVLQSGFSHQLKSHWLG 722 (768)
T ss_pred eeeccCCchhhhcccchHHHHHHHHHHHHhcccccHHHHHhhhhhhhcchHHhhhhhcc
Confidence 999999999887 48999999999999999999999999999999999999999985
No 56
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=2e-13 Score=126.19 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=118.7
Q ss_pred eccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhc--CCCc-EEecc
Q 025169 88 DLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKS--SKIP-VEICL 164 (257)
Q Consensus 88 ~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~--~~i~-v~~cP 164 (257)
+..+....+++++.+++++.|++.|+++.+|+.+.. .+..++++|++.+.|+++++++..+.|++ .|++ .++-|
T Consensus 209 d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~---g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p 285 (406)
T COG1228 209 DAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGAD---GIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGTPVPVLLP 285 (406)
T ss_pred hccccccccCHHHHHHHHHHHHHCCCceEEEecccc---hHHHHHHhCcceehhhhhcCHhHHHHHhhccCCCccccccc
Confidence 334445568899999999999999999999998764 66788899999999999999999999999 7763 24455
Q ss_pred cccceeccccCCCcccHHHHHhcCCCEEecCCCCCCC-CCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 165 TSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVF-STSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 165 ~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~-~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.....+.. ....|++.|+++||+|++|||.+... ..++..+|.++++.. ||+.|.++. |.|+++++++++
T Consensus 286 ~~~~~l~e---~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~ 357 (406)
T COG1228 286 RTKFELRE---LDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRLG-MTPEEALKAATINAAKALGLAD 357 (406)
T ss_pred hhhhhhhc---ccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcc
Confidence 55444443 13457999999999999999976666 578999999999865 999999887 689999999875
No 57
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.48 E-value=5.6e-13 Score=126.02 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=107.3
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-----c---CC-cEEeecccccHHHHHHHhcCCCcEEecccc
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-----F---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-----l---g~-~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~S 166 (257)
++++.+.++++.|+++|+++++|+........+.++++ . +. .+|.||..+++++++++++.|+.+++||.+
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~ 371 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNH 371 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCccc
Confidence 46789999999999999999999963221122222221 1 22 689999999999999999999999999998
Q ss_pred cceeccc---------cCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh------------CCCCHHHHHH
Q 025169 167 NIRTETI---------SSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA------------FSLGRREMFQ 225 (257)
Q Consensus 167 N~~l~~~---------~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~------------~~ls~~~v~~ 225 (257)
+...+.. ..-...|++.++++|++|++|||.|.. ..+++..++.+... .++|..++++
T Consensus 372 ~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~-~~~p~~~~~~av~~~~~~~~~~~~~~~~ls~~~al~ 450 (479)
T cd01300 372 LYSDGDAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVA-PPDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALR 450 (479)
T ss_pred ccCchHHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCC-CCCHHHHHHHHheeeCCCCCCCCCccccCCHHHHHH
Confidence 7542210 011357899999999999999998754 35677787776531 2578999998
Q ss_pred H-HHHHHHHcCCCh
Q 025169 226 L-AKSAVKFIFANG 238 (257)
Q Consensus 226 ~-~~n~~~~~~~~~ 238 (257)
+ |.|+++..++++
T Consensus 451 ~~T~~~A~~lg~e~ 464 (479)
T cd01300 451 AYTIGAAYAIGEED 464 (479)
T ss_pred HHHHHHHHHhcccc
Confidence 7 689999998765
No 58
>PRK06846 putative deaminase; Validated
Probab=99.36 E-value=2.3e-11 Score=112.97 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred HHHHHHHHhhCCCceEEEeccC-CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHh--hHHHHH----hc---CCcEE
Q 025169 70 METVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE--EIQSML----DF---LPQRI 139 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~l~g-~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~--~i~~~l----~l---g~~ri 139 (257)
.+.++.+.+.... +++ ++.. .....+++.+..+++.|+++|+++++|+.|..... .+...+ +. +...+
T Consensus 178 ~~lL~~al~~Ga~-~i~-gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~~v~~ 255 (410)
T PRK06846 178 EPLMREAMKMGAH-LVG-GVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKGKVTI 255 (410)
T ss_pred HHHHHHHHHcCCC-EEe-CCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEE
Confidence 4455555544433 443 2322 22345678899999999999999999999876432 111111 22 33468
Q ss_pred eecccc---cHHHH----HHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCC----CCCC-CChHH
Q 025169 140 GHACCF---EEEEW----RKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDS----GVFS-TSVSR 207 (257)
Q Consensus 140 ~Hg~~l---~~~~~----~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~----~~~~-~~l~~ 207 (257)
+||+++ +++++ ++++++|+.+++|+. ++. +..|+++|+++|++|++|||++ ..++ .||++
T Consensus 256 ~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~----~~~----g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~ 327 (410)
T PRK06846 256 SHAFALGDLNEEEVEELAERLAAQGISITSTVP----IGR----LHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLE 327 (410)
T ss_pred EecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC----CCC----CCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHH
Confidence 999975 66664 579999999987643 333 5689999999999999999986 2333 58999
Q ss_pred HHHHHHHhCCCCHHH
Q 025169 208 EYDLAASAFSLGRRE 222 (257)
Q Consensus 208 E~~~a~~~~~ls~~~ 222 (257)
|++.++...+++..+
T Consensus 328 ~~~~~~~~~~~~~~~ 342 (410)
T PRK06846 328 KANLLAELYRWSDER 342 (410)
T ss_pred HHHHHHHHhcCCCHH
Confidence 999988766766543
No 59
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.27 E-value=4.7e-10 Score=103.17 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=121.1
Q ss_pred hHhhcccCCCcEEEEEEEeeCCC--------CHHH--HHHHHHHHHhhCCCceEEEecc---CCCCCCChhcHHHHHHHH
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRE--------TTEA--AMETVKLALEMRDLGVVGIDLS---GNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~--------~~e~--~~~~~~~~~~~~~~~vvg~~l~---g~~~~~~~~~~~~~~~~A 108 (257)
+.+.+.++.|+|+.+........ .+.. ..+..++...|.+ ++.|+.+. +.....+++.+++..+.|
T Consensus 104 ~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ki~~~~~~~~~~~~~~l~~~~~~A 182 (379)
T PRK12394 104 RTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRN-VLQGLKLRVQTEDIAEYGLKPLTETLRIA 182 (379)
T ss_pred HHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcC-cEEEEEEEEecccccccchHHHHHHHHHH
Confidence 33346788999998876654311 1111 1233333333433 35554322 222245678999999999
Q ss_pred HHcCCceeeecCCCCCHhhHHHHHh-cCC-cEEeecccc------c-----HHHHHHHhcCCCcE-Eecccccceecccc
Q 025169 109 REQGLQITLHCGEIPNKEEIQSMLD-FLP-QRIGHACCF------E-----EEEWRKLKSSKIPV-EICLTSNIRTETIS 174 (257)
Q Consensus 109 ~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~-~ri~Hg~~l------~-----~~~~~~l~~~~i~v-~~cP~SN~~l~~~~ 174 (257)
+++|+++++|++|+... ..+.+. ++. +.+.||++. + .++++.++++|+.+ ++||.||.....
T Consensus 183 ~~~g~~v~iH~~e~~~~--~~~~~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~s~~~~~~-- 258 (379)
T PRK12394 183 NDLRCPVAVHSTHPVLP--MKELVSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGRSHFDMNV-- 258 (379)
T ss_pred HHcCCCEEEEeCCCCcc--HHHHHHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCccccchHH--
Confidence 99999999999886432 233333 222 568999872 2 35778899999887 889988863322
Q ss_pred CCCcccHHHHHhcCC-CEEecCCCCCCCC-CC----hHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 175 SLDIHHFVDLYKAQH-PLVLCTDDSGVFS-TS----VSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv-~v~lgTD~~~~~~-~~----l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
..+++++|+ +++||||++.+++ .+ |...+..+. ..++++.+++++ +.|++++.+++
T Consensus 259 ------~~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 259 ------ARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYL-ALGMALEDVINACTHTPAVLMGMA 321 (379)
T ss_pred ------HHHHHHCCCCceEEECCCCCCCcccCccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 458999995 9999999987653 22 333333333 368999999998 58999999885
No 60
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.13 E-value=1.5e-09 Score=97.79 Aligned_cols=134 Identities=10% Similarity=-0.022 Sum_probs=105.7
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccccC
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 175 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~ 175 (257)
.+.+.++.+++.|+++|++++.|+.++ ++.+..+.+.|+..+.|. .+.+.++.++++|+.+++|+.+.+.-++ .
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~--~~~v~~a~~~Gv~~~E~p--~t~e~a~~a~~~G~~vv~gapn~lrg~s--~ 233 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDT--PEHVAEAHELGVVISEFP--TTLEAAKAARELGLQTLMGAPNVVRGGS--H 233 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCC--hHHHHHHHHCCCeeccCC--CCHHHHHHHHHCCCEEEecCcccccCcc--c
Confidence 456889999999999999999999876 567888888999988876 5889999999999999988764443222 2
Q ss_pred CCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 176 LDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 176 ~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+..|+.++++.|++++||||... .++..-...++...++++.+++++ +.|++++.++++
T Consensus 234 ~g~~~~~~ll~~Gv~~al~SD~~p---~sll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d 294 (325)
T cd01306 234 SGNVSARELAAHGLLDILSSDYVP---ASLLHAAFRLADLGGWSLPEAVALVSANPARAVGLTD 294 (325)
T ss_pred cccHhHHHHHHCCCeEEEEcCCCc---HhHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 255689999999999999999842 234333333344478999999998 589999999863
No 61
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.11 E-value=8e-10 Score=101.00 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh----cCCc-EEeecccccHHHHHHHhcCCCcEEecccccceecc-cc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQSMLD----FLPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTET-IS 174 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~----lg~~-ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~-~~ 174 (257)
+..+++.++. .+++.+|+.+ ..++..+++ +|.+ .+.||... .+.+++|++.|+++++||+.|..... ..
T Consensus 182 l~~l~~~~~~-~~~v~vHa~~---~~~i~~~l~~~~e~g~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~ 256 (359)
T cd01309 182 LEALLPVLKG-EIPVRIHAHR---ADDILTAIRIAKEFGIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEV 256 (359)
T ss_pred HHHHHHHHcC-CeeEEEEeCC---HHHHHHHHHHHHHcCCCEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHh
Confidence 4444444442 2899999964 334444443 5765 78999987 77899999999999999998865331 00
Q ss_pred CCCcccHHHHHhcC-CCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 175 SLDIHHFVDLYKAQ-HPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 175 ~~~~~pi~~l~~~G-v~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
..+..|+..|+++| |+|++|||.|......+..++..+.. .+++..+++++ +.|+++..++++
T Consensus 257 ~~~~~~~~~l~~aGGv~valgsD~~~~~~~~l~~~~~~a~~-~gl~~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 257 NDAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLEAAKAVK-YGLSYEEALKAITINPAKILGIED 321 (359)
T ss_pred hcchhhHHHHHHcCCceEEEECCCCCccchhHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCC
Confidence 11456889999998 99999999975433456666655544 78999999997 689999998865
No 62
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.05 E-value=6.5e-10 Score=99.27 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=104.3
Q ss_pred CCCCCChhcHHHHHHHHHH-----c-CCceeeecCCCCCHh----------h---H------HHHHhcCCcEEeeccccc
Q 025169 92 NPTKGEWTTFLPALKFARE-----Q-GLQITLHCGEIPNKE----------E---I------QSMLDFLPQRIGHACCFE 146 (257)
Q Consensus 92 ~~~~~~~~~~~~~~~~A~~-----~-gl~v~~Ha~E~~~~~----------~---i------~~~l~lg~~ri~Hg~~l~ 146 (257)
....++.+.++..++.+++ . ++++++|++|..... . . ...+.-+.+.+.||++++
T Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 216 (333)
T PF01979_consen 137 NPYTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLS 216 (333)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSE
T ss_pred ccccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCC
Confidence 4556777889999999988 4 999999999874330 0 0 222334678999999999
Q ss_pred HHHHHHHhcCCCcEEecccccce--------------------eccccCCCcccHHHHHhc-CCCEEecCCCCCCCCCCh
Q 025169 147 EEEWRKLKSSKIPVEICLTSNIR--------------------TETISSLDIHHFVDLYKA-QHPLVLCTDDSGVFSTSV 205 (257)
Q Consensus 147 ~~~~~~l~~~~i~v~~cP~SN~~--------------------l~~~~~~~~~pi~~l~~~-Gv~v~lgTD~~~~~~~~l 205 (257)
++++++|++.++.+.+||++|.. ++. +..++..+++. |++ +|||+. .
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~g~~--lgtDg~--~---- 284 (333)
T PF01979_consen 217 DEEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGS----GGAPLFRMLDKMGVN--LGTDGV--A---- 284 (333)
T ss_dssp HHHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTH----HHHHHHHHHHCTTHE--ETTCTT--C----
T ss_pred HHHhhhhhccCCccccccchhhhhccccccccccchhccccccccc----cccchhhhhhhcccc--cccccc--c----
Confidence 99999999999999999999987 211 23467777777 998 999932 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCCh
Q 025169 206 SREYDLAASAFSLGRREMFQLA-KSAVKFIFANG 238 (257)
Q Consensus 206 ~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~~~~~ 238 (257)
+||+.+.+ .++++.++++++ .|+++..++++
T Consensus 285 -~~l~~~~~-~~~~~~~~l~~aT~n~Ak~lg~~~ 316 (333)
T PF01979_consen 285 -EELKLFVR-LGISPEEALKMATINPAKILGLDD 316 (333)
T ss_dssp -HHHHHHHH-HHSHHHHHHHHHTHHHHHHTTSTT
T ss_pred -cccccccc-ccccccccccccchhHHHHcCCCC
Confidence 88988887 459999999985 89999999854
No 63
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.04 E-value=4.3e-09 Score=97.05 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=105.4
Q ss_pred CCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 95 KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 95 ~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
.++.+.++.+++.|+++|++++.|+.++ .+.+..+.+.|++.+.|. .+.+..+.++++|+.+..|+.+++..+.
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~--~~~i~~a~~~Gv~~~e~~--~~~e~~~~~~~~g~~v~~~~p~~~r~~~-- 283 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDT--PEHVAEAHALGVAIAEFP--TTLEAARAARALGMSVLMGAPNVVRGGS-- 283 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCC--HHHHHHHHHcCCceeeCC--CcHHHHHHHHHCCCEEEeCCcccccCCc--
Confidence 3567889999999999999999999765 567888888999988874 4678889999999999888764443221
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
..+..++.++++.|+++++|||... .+++..+...+...++++.+++++ +.|+++..++++
T Consensus 284 ~~~~~~~~~~~~~Gv~~~lgSD~~p---~~~~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~ 345 (383)
T PRK15446 284 HSGNVSALDLAAAGLLDILSSDYYP---ASLLDAAFRLADDGGLDLPQAVALVTANPARAAGLDD 345 (383)
T ss_pred ccchHhHHHHHHCCCcEEEEcCCCh---hhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCC
Confidence 1245688999999999999999732 245555555555678999999998 589999999854
No 64
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.96 E-value=9.1e-09 Score=98.01 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=106.4
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHH---h-----c---C-CcEEeecccccHHHHHHHhcCCCcEEec
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML---D-----F---L-PQRIGHACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l---~-----l---g-~~ri~Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
++++.|.++++.|.++|+++.+|+ .+...+..++ + . + .+||.|.-.++|++++++++-|+.+++.
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHA---iGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQ 394 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHA---IGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQ 394 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEE---echHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeec
Confidence 467889999999999999999999 4444444333 2 1 2 2799999999999999999999998888
Q ss_pred ccccce--------eccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhC-----------CCCHHHHH
Q 025169 164 LTSNIR--------TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF-----------SLGRREMF 224 (257)
Q Consensus 164 P~SN~~--------l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~-----------~ls~~~v~ 224 (257)
|.=-.. ++.-......|++.|+++|++|+.|||.|. ...+.+.-++.++... .+|..+.+
T Consensus 395 P~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv-~~~dP~~~i~~AVtr~~~~g~~~~~~~~L~~~eAL 473 (535)
T COG1574 395 PNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPV-EPYDPWLGIYAAVTRKTPGGRVLGPEERLTREEAL 473 (535)
T ss_pred cccccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCC-CCCChHHHHHHHHcCCCCCCCCCccccccCHHHHH
Confidence 753221 111111246799999999999999999987 4457777787777621 48999999
Q ss_pred HH-HHHHHHHcCCCh
Q 025169 225 QL-AKSAVKFIFANG 238 (257)
Q Consensus 225 ~~-~~n~~~~~~~~~ 238 (257)
++ |+||+.++|.+.
T Consensus 474 ~~yT~~~A~a~~~e~ 488 (535)
T COG1574 474 RAYTEGGAYASGAEG 488 (535)
T ss_pred HHHhhhhHHhhhccc
Confidence 98 899999999843
No 65
>PLN02942 dihydropyrimidinase
Probab=98.95 E-value=6.4e-08 Score=91.95 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=97.9
Q ss_pred CCCCChhcHHHHHHHHHHcCCceeeecCCCCCH-h----------------------------hHHHHHh----cCC-cE
Q 025169 93 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-E----------------------------EIQSMLD----FLP-QR 138 (257)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~----------------------------~i~~~l~----lg~-~r 138 (257)
...++.+.+.++++.|++.|+++++| +|.... . .+..++. +|+ --
T Consensus 161 ~~~~~~~~l~~~~~~a~~~~~~v~~H-aE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~ 239 (486)
T PLN02942 161 SLMVTDELLLEGFKRCKSLGALAMVH-AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLY 239 (486)
T ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEE-cCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEE
Confidence 34557788999999999999999999 665321 0 0111111 344 35
Q ss_pred EeecccccH-HHHHHHhcCCCcEEecccc-cceecc--c--------cCCC-cccH---------HHHHhcCCCEEecCC
Q 025169 139 IGHACCFEE-EEWRKLKSSKIPVEICLTS-NIRTET--I--------SSLD-IHHF---------VDLYKAQHPLVLCTD 196 (257)
Q Consensus 139 i~Hg~~l~~-~~~~~l~~~~i~v~~cP~S-N~~l~~--~--------~~~~-~~pi---------~~l~~~Gv~v~lgTD 196 (257)
+.|+.+.++ ++++.++++|+.|++||++ ++.+.. + +.+. .+|+ .++++.|+.++||||
T Consensus 240 i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTD 319 (486)
T PLN02942 240 VVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTD 319 (486)
T ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECC
Confidence 789999887 8999999999999999985 333221 0 0001 3465 589999999999999
Q ss_pred CCCCCC-CChH--------------HHHHH------HHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 197 DSGVFS-TSVS--------------REYDL------AASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 197 ~~~~~~-~~l~--------------~E~~~------a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
....+. .+++ -|+.+ +.....++..+++++ +.|+++..++.+
T Consensus 320 h~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 320 HCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYP 383 (486)
T ss_pred CCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 765432 2221 13321 222235899999998 589999999854
No 66
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=98.86 E-value=3.8e-07 Score=85.57 Aligned_cols=144 Identities=11% Similarity=0.019 Sum_probs=93.1
Q ss_pred CCCCChhcHHHHHHHHHHcCCceeeecCCCCCHh--hH---------------------------HHHHh----cCCc-E
Q 025169 93 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE--EI---------------------------QSMLD----FLPQ-R 138 (257)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~--~i---------------------------~~~l~----lg~~-r 138 (257)
.+..+++.++++++.|++.|+++++|+ |+.... .+ ..++. +|.. -
T Consensus 157 ~~~~~~~~l~~~~~~a~~~~~~v~~H~-E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~ 235 (454)
T TIGR02033 157 LLMVDDEELFEILKRAKELGALLQVHA-ENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLY 235 (454)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEc-CCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 445788999999999999999999996 663210 00 01111 1221 2
Q ss_pred Eeecccc-cHHHHHHHhcCC--CcEEecccccceecc-c------cCCC--ccc---------HHHHHhcCCCEEecCCC
Q 025169 139 IGHACCF-EEEEWRKLKSSK--IPVEICLTSNIRTET-I------SSLD--IHH---------FVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 139 i~Hg~~l-~~~~~~~l~~~~--i~v~~cP~SN~~l~~-~------~~~~--~~p---------i~~l~~~Gv~v~lgTD~ 197 (257)
+.|.... +.++++.++++| +.+++||.+++.... + ...+ .+| +.++++.|+.++||||.
T Consensus 236 i~H~s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh 315 (454)
T TIGR02033 236 VVHVSTASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDH 315 (454)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCC
Confidence 3444432 246788889998 557899999752211 0 0001 246 66999999999999998
Q ss_pred CCCC-----------------CCChHHHHHHHHHh------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 198 SGVF-----------------STSVSREYDLAASA------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 198 ~~~~-----------------~~~l~~E~~~a~~~------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
..++ +.+.+ |+.+.... ..++..+++++ +.|++++.++.+
T Consensus 316 ~p~~~~~k~~~~~~~~~~~~~G~~g~-e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 316 CPFNFAQKKAIGKDDFTKIPNGGPGV-EERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYP 379 (454)
T ss_pred CCCCHHHhhhcccCCHhhCCCCCchH-HhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCC
Confidence 6543 11122 55544332 24899999998 589999999854
No 67
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=98.85 E-value=1.4e-07 Score=88.49 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=94.2
Q ss_pred CCCCChhcHHHHHHHHHHcCCceeeecCCCCCH-hhH----------------------------HHHHh----cCCc-E
Q 025169 93 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEI----------------------------QSMLD----FLPQ-R 138 (257)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~~i----------------------------~~~l~----lg~~-r 138 (257)
.+.++.+.++++++.|++.|+++++|+ |+... ... ...+. +++. -
T Consensus 156 ~~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~ 234 (447)
T cd01314 156 LLMVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLY 234 (447)
T ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 456688999999999999999999996 65321 000 00111 3433 2
Q ss_pred Eeecccc-cHHHHHHHhcCCCcE--Eecccccceecc-c-------cCCC-ccc---------HHHHHhcCCCEEecCCC
Q 025169 139 IGHACCF-EEEEWRKLKSSKIPV--EICLTSNIRTET-I-------SSLD-IHH---------FVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 139 i~Hg~~l-~~~~~~~l~~~~i~v--~~cP~SN~~l~~-~-------~~~~-~~p---------i~~l~~~Gv~v~lgTD~ 197 (257)
+.|.... +-++++.++++|+.+ ++||.+++.... + ..+. .+| +.++++.|+.++||||.
T Consensus 235 ~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh 314 (447)
T cd01314 235 IVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDH 314 (447)
T ss_pred EEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCC
Confidence 4555543 234688888888655 799999553321 0 0001 133 56999999999999998
Q ss_pred CCCCC-CChHH--------------HHHHHHHh------CCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 198 SGVFS-TSVSR--------------EYDLAASA------FSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 198 ~~~~~-~~l~~--------------E~~~a~~~------~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
...+. .+++. |+++.... ..++..+++++ +.|+++..++.+
T Consensus 315 ~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~ 377 (447)
T cd01314 315 CPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYP 377 (447)
T ss_pred CCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCC
Confidence 76543 23332 55544322 25999999998 589999999744
No 68
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=98.82 E-value=4.8e-08 Score=90.22 Aligned_cols=189 Identities=10% Similarity=0.070 Sum_probs=118.1
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCH-----HHHHHHHHHHHhhCCCceEEEe-cc-CCCC--CCChhcHHHHHHHHHH
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETT-----EAAMETVKLALEMRDLGVVGID-LS-GNPT--KGEWTTFLPALKFARE 110 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~-----e~~~~~~~~~~~~~~~~vvg~~-l~-g~~~--~~~~~~~~~~~~~A~~ 110 (257)
+.+..++.++.|||+.+..+..+. +. ....+. .+. +.++|++ ++ .+.. ..+.+.++++.+.||.
T Consensus 110 ~~a~~~al~~~Gir~~~~~g~~~~-p~~t~t~~~~~d~-----~~~-d~iiG~~~ia~sd~r~~~~~~~~l~~~~~~~~~ 182 (389)
T TIGR01975 110 LLAKARALEEEGISCYMLTGAYHV-PSRTITGSVESDL-----LLI-DKVIGVGEIAISDHRSAQPTVEHLTNMAAEARV 182 (389)
T ss_pred HHHHHHHHHHhCCEEEEEcccccC-CCcccccchhhhe-----eee-hhhcccceEEEccCcCCCCCHHHHHHHHHHHHH
Confidence 345778889999999998776642 11 111111 112 2377775 54 2222 2245889999999999
Q ss_pred cC----Cc--eeeecCCCCCH-hhHHHHHhcCCcEEeecc---ccc------HHHHHHHhcCCCcEEecccccceecccc
Q 025169 111 QG----LQ--ITLHCGEIPNK-EEIQSMLDFLPQRIGHAC---CFE------EEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 111 ~g----l~--v~~Ha~E~~~~-~~i~~~l~lg~~ri~Hg~---~l~------~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
.| .+ +++|.|..... +.+.+.++-+ +...|++ +++ ++.++.+++.|..-..+|.+-..+.. .
T Consensus 183 ~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~-di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~-~ 260 (389)
T TIGR01975 183 GGLLGGKPGIVNFHVGDSKRALQPIYELVENT-DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKE-G 260 (389)
T ss_pred HHHhcCCCcEEEEEeCCchhhHHHHHHHHHhc-CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhc-c
Confidence 88 99 99999854221 2344444322 4444443 342 45677777766544444444333321 0
Q ss_pred CCCc-ccHHHHHhcCCCE---EecCCCCCCCC---C-------------ChHHHHHHHHHhCCCCHHHHHHH-HHHHHHH
Q 025169 175 SLDI-HHFVDLYKAQHPL---VLCTDDSGVFS---T-------------SVSREYDLAASAFSLGRREMFQL-AKSAVKF 233 (257)
Q Consensus 175 ~~~~-~pi~~l~~~Gv~v---~lgTD~~~~~~---~-------------~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~ 233 (257)
.+.. .-++.++++|+++ ++|||..++.. . ++..+++.+....++++++++++ +.|+++.
T Consensus 261 ~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~ 340 (389)
T TIGR01975 261 EVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGV 340 (389)
T ss_pred ccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 1368899999985 99999754332 1 57889998888667999999987 5899999
Q ss_pred cCCC
Q 025169 234 IFAN 237 (257)
Q Consensus 234 ~~~~ 237 (257)
..++
T Consensus 341 Lgl~ 344 (389)
T TIGR01975 341 LNLT 344 (389)
T ss_pred hCCC
Confidence 9875
No 69
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=98.78 E-value=1.9e-07 Score=85.99 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=113.8
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCH---HHHHHHHHHHHhhCCCceEEEeccC-CCCCCChhcHHHHHHHHHHcCC--
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETT---EAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQGL-- 113 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~---e~~~~~~~~~~~~~~~~vvg~~l~g-~~~~~~~~~~~~~~~~A~~~gl-- 113 (257)
+.+..++..+.|+++....+..+.... +...+.+....++.+.+- +++.. .....+.+.++++.+.++..+.
T Consensus 110 ~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~--~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~ 187 (388)
T PRK10657 110 LLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDIVLIDKVIGVGE--IAISDHRSSQPTVEELARLAAEARVGGLLS 187 (388)
T ss_pred HHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhceehhhhhhCcce--eeeccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 444566677889999866544431111 111111111112221111 22222 2344567788888877775544
Q ss_pred ----ceeeecCCCCC-HhhHHHHH-hcCCc----EEeeccc---ccHHHHHHHhcCCCcE-EecccccceeccccCC-Cc
Q 025169 114 ----QITLHCGEIPN-KEEIQSML-DFLPQ----RIGHACC---FEEEEWRKLKSSKIPV-EICLTSNIRTETISSL-DI 178 (257)
Q Consensus 114 ----~v~~Ha~E~~~-~~~i~~~l-~lg~~----ri~Hg~~---l~~~~~~~l~~~~i~v-~~cP~SN~~l~~~~~~-~~ 178 (257)
++++|++|+.. .+.+.+.+ +.|.. ...|+.. ..++.++++++ |..+ ..|+.+++.... ++ ..
T Consensus 188 g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~-G~~~~v~~~~~~~~~~~--~~~~~ 264 (388)
T PRK10657 188 GKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKK-GGVIDLTTSDPDFLGEG--EVAPA 264 (388)
T ss_pred CCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHc-CCeEEEecCCCcccccC--ccCHH
Confidence 89999997532 23333444 45653 2567665 34566666664 5444 333444432221 11 12
Q ss_pred ccHHHHHhcCC---CEEecCCCCCCC---------------C-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 179 HHFVDLYKAQH---PLVLCTDDSGVF---------------S-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 179 ~pi~~l~~~Gv---~v~lgTD~~~~~---------------~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.++.++++.|+ +|++|||....+ + .++..+++.+....++++.+++++ +.|+++...+++
T Consensus 265 ~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~ 344 (388)
T PRK10657 265 EALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNG 344 (388)
T ss_pred HHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 45889999999 899999953221 1 248889988876789999999998 589999998764
No 70
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=98.67 E-value=3.7e-07 Score=84.06 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=99.8
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCC
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSL 176 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~ 176 (257)
+.+.++.+++.|++.|++++.|+.|+ .+.+..+...|...+.|. ++.+..+.++++|+.+..|+. |...+. ...
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~--~e~i~~a~~~Gv~~~E~~--~t~e~a~~~~~~G~~v~~~~p-~~~r~~-~~~ 280 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDT--PEHVAEAHDLGVTISEFP--TTLEAAKEARSLGMQILMGAP-NIVRGG-SHS 280 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCC--HHHHHHHHHCCCChhccC--CCHHHHHHHHHcCCeEEECCc-cccccc-ccc
Confidence 45778899999999999999999776 567788888898888886 577889999999999887742 222221 222
Q ss_pred CcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 177 DIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 177 ~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+..++.++++.|+..++|||.... ..+...+..+....+++..+++++ +.|+++..+++
T Consensus 281 ~~~~l~~~~~~G~~~~l~SD~~p~--~~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~ 340 (376)
T TIGR02318 281 GNLSARELAHEGLLDVLASDYVPA--SLLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLS 340 (376)
T ss_pred chHHHHHHHHCCCcEEEEcCCCcH--HHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 456889999999999999998432 222222333333347999999997 58999999985
No 71
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=98.64 E-value=1.6e-07 Score=86.63 Aligned_cols=146 Identities=18% Similarity=0.168 Sum_probs=98.1
Q ss_pred eccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH---Hh-cCCc-EEeecccccHHHHHHHhcCCCcEEe
Q 025169 88 DLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSM---LD-FLPQ-RIGHACCFEEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 88 ~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~---l~-lg~~-ri~Hg~~l~~~~~~~l~~~~i~v~~ 162 (257)
+..|.. ..+++.+.++++.|++.|+++++|+. +...+..+ ++ .+.. ++.|+..+++++++++++.++.+++
T Consensus 215 ~~~g~~-~~~~~~l~~~v~~a~~~g~~v~vHa~---gd~a~~~~l~a~~~~~~~~~i~h~~~~~~~~~~~~~~l~~~~~~ 290 (404)
T PF07969_consen 215 HISGLP-SFDPEELEELVRAAREAGLQVAVHAI---GDRAIDEALDAIEAARARGRIEHAELIDPDDIERMAELGVTASV 290 (404)
T ss_dssp EETC---SSSHHHHHHHHHHHHHCT-EEEEEEE---SHHHHHHHHHHHHHHTCCHEEEEHCBCCHHHHHHHHHHTTEEEE
T ss_pred cccccc-cccchhHHHHHHHHHhcCCeeEEEEc---CCchHHhHHHHHHhhcccceeeccccCCHHHHHHHHHhCCcccc
Confidence 344433 34566699999999999999999993 34444433 33 3444 9999999999999999999999999
Q ss_pred ccc---ccc------eeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh--------------CCCC
Q 025169 163 CLT---SNI------RTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------------FSLG 219 (257)
Q Consensus 163 cP~---SN~------~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~--------------~~ls 219 (257)
.|. +.. .++....-...|++.++++|++|++|||.|. +..+.+.-+..+... ..+|
T Consensus 291 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ls 369 (404)
T PF07969_consen 291 QPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPV-SPPNPFRGIWAAVTRQMAGERSGPVLGPEQRLS 369 (404)
T ss_dssp CCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTT-SSCCHHHHHHHHHHHHHCHHTHHHCCGGTGSSH
T ss_pred ChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCcc-cccCcchhhhhhhccccccccccccccccccCC
Confidence 981 000 1111111134799999999999999999886 323333333333211 3589
Q ss_pred HHHHHHH-HHHHHHHcCCCh
Q 025169 220 RREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 220 ~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+|.+++ |.|+++..++++
T Consensus 370 ~~eAl~~~T~~~A~~~g~~~ 389 (404)
T PF07969_consen 370 LEEALRAYTSNPARALGLED 389 (404)
T ss_dssp HHHHHHHTTHHHHHHTT-TT
T ss_pred HHHHHHHHhHHHHHHcCCCC
Confidence 9998886 799999998876
No 72
>PRK09357 pyrC dihydroorotase; Validated
Probab=98.63 E-value=2.2e-06 Score=79.96 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=115.3
Q ss_pred CchhhhhhHhhcccCCCcEEEEEEEeeC-CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC
Q 025169 35 VNTKNMNDACNGTRGKKIYVRLLLSIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 35 ~~~~~~~~~~~a~~~~gir~~li~~~~r-~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
+..+.++..+++.++.|++.....+... ....+...+..++. ..++.++...+ .+..+++.+.++++.|+++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~gv~~~~~~~-~~~~~~~~l~~~~~~a~~~g~ 173 (423)
T PRK09357 99 DTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK----EAGVVAFSDDG-IPVQDARLMRRALEYAKALDL 173 (423)
T ss_pred CcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH----hCCcEEEECCC-cccCCHHHHHHHHHHHHhcCC
Confidence 3445667777777777876655554432 11112222222222 13466665433 445577889999999999999
Q ss_pred ceeeecCCCCCHh-------------------------hHHHHHh----cCC-cEEeeccccc-HHHHHHHhcCCCc--E
Q 025169 114 QITLHCGEIPNKE-------------------------EIQSMLD----FLP-QRIGHACCFE-EEEWRKLKSSKIP--V 160 (257)
Q Consensus 114 ~v~~Ha~E~~~~~-------------------------~i~~~l~----lg~-~ri~Hg~~l~-~~~~~~l~~~~i~--v 160 (257)
++++|+.|+.-.. .+..++. .|+ -.+.|..... -+.++..+++|+. .
T Consensus 174 ~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~ 253 (423)
T PRK09357 174 LIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTA 253 (423)
T ss_pred EEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEE
Confidence 9999998763100 0112221 243 2455554432 2345556666644 5
Q ss_pred Eecc-------------cccceeccccCCC----cccHHHHHhcCCCEEecCCCCCCCCC----ChH--------HHHHH
Q 025169 161 EICL-------------TSNIRTETISSLD----IHHFVDLYKAQHPLVLCTDDSGVFST----SVS--------REYDL 211 (257)
Q Consensus 161 ~~cP-------------~SN~~l~~~~~~~----~~pi~~l~~~Gv~v~lgTD~~~~~~~----~l~--------~E~~~ 211 (257)
++|| .++.++ .|+++ ..++.++++.|+.+++|||.+..... ++. .|+.+
T Consensus 254 e~~ph~L~~~~~~~~~~~~~~k~--~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~ 331 (423)
T PRK09357 254 EVTPHHLLLTDEDLLTYDPNYKV--NPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECEFEAAPFGITGLETAL 331 (423)
T ss_pred EechHHheEcHHHHhCcCCceEE--CCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHccCCHhhCCCCceEHHHHH
Confidence 6999 333332 22222 45788999999999999997654321 110 22222
Q ss_pred HH------HhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 212 AA------SAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 212 a~------~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.. ...+++.++++++ +.|+++..++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 332 SLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA 365 (423)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 11 1236999999997 689999998754
No 73
>PRK08323 phenylhydantoinase; Validated
Probab=98.56 E-value=1.1e-05 Score=75.96 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=93.7
Q ss_pred CCCCChhcHHHHHHHHHHcCCceeeecCCCCCH-h----------------------------hHHHHHh----cCCc-E
Q 025169 93 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK-E----------------------------EIQSMLD----FLPQ-R 138 (257)
Q Consensus 93 ~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~----------------------------~i~~~l~----lg~~-r 138 (257)
...++.+++.++++.|+++|+++++|+ |+... . .+..+++ +|+. -
T Consensus 154 ~~~~s~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~ 232 (459)
T PRK08323 154 ALMLDDDELLRALQRAAELGALPMVHA-ENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLY 232 (459)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEEEc-CChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 346788899999999999999999995 64211 0 0111222 2432 2
Q ss_pred Eeecccc-cHHHHHHHhcCCCc--EEeccc------ccceecc---------ccCCC----cccHHHHHhcCCCEEecCC
Q 025169 139 IGHACCF-EEEEWRKLKSSKIP--VEICLT------SNIRTET---------ISSLD----IHHFVDLYKAQHPLVLCTD 196 (257)
Q Consensus 139 i~Hg~~l-~~~~~~~l~~~~i~--v~~cP~------SN~~l~~---------~~~~~----~~pi~~l~~~Gv~v~lgTD 196 (257)
+.|.... +-++++.++++|+. +++||. ||+..+. .|+++ ..++.++++.|+..+||||
T Consensus 233 i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sD 312 (459)
T PRK08323 233 IVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATD 312 (459)
T ss_pred EEeCCCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECC
Confidence 4444432 23467777888866 579999 8876532 11111 2347799999999999999
Q ss_pred CCCCCC-CChH---------------HHHHHHHH------hCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 197 DSGVFS-TSVS---------------REYDLAAS------AFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 197 ~~~~~~-~~l~---------------~E~~~a~~------~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
..+.+. .+++ .|++.... ...++.++++++ +.|+++..++.
T Consensus 313 h~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 313 HCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLY 376 (459)
T ss_pred CCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCC
Confidence 876543 2221 44433322 235899999997 68999999974
No 74
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.47 E-value=2.3e-05 Score=67.43 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=109.5
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhC-CCceEEEeccCCCCC--CC-----hhcHHHHHHHHHHcC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR-DLGVVGIDLSGNPTK--GE-----WTTFLPALKFAREQG 112 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~-~~~vvg~~l~g~~~~--~~-----~~~~~~~~~~A~~~g 112 (257)
+.+.+.+++++ ++....++.-........+.++...++. ..+++|++-.|-... .. .+.|.+.++.|++.|
T Consensus 43 ~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~ 121 (252)
T TIGR00010 43 LRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELN 121 (252)
T ss_pred HHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44445556677 6665555543111110122233333332 234666654442221 11 266888899999999
Q ss_pred CceeeecCCCCCHhhHHHHHh-cC--CcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcC-
Q 025169 113 LQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ- 188 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~-lg--~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G- 188 (257)
++|.+|++.. ...+.+.+. .+ ...+.|+..-+.+.+..+.++|+.+.+++.++.. ...-+.++++..
T Consensus 122 ~pv~iH~~~~--~~~~~~~l~~~~~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~i~~~~ 192 (252)
T TIGR00010 122 LPVIIHARDA--EEDVLDILREEKPKVGGVLHCFTGDAELAKKLLDLGFYISISGIVTFK-------NAKSLREVVRKIP 192 (252)
T ss_pred CCeEEEecCc--cHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHCCCeEeeceeEecC-------CcHHHHHHHHhCC
Confidence 9999999753 333444443 43 3568899866778888888899999888644321 011255666654
Q ss_pred -CCEEecCCCCCCC---------C-CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHc
Q 025169 189 -HPLVLCTDDSGVF---------S-TSVSREYDLAASAFSLGRREMFQLA-KSAVKFI 234 (257)
Q Consensus 189 -v~v~lgTD~~~~~---------~-~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~ 234 (257)
=++.++||.|-.. + ..+..-+..++...|++.+++.++. .|+.+..
T Consensus 193 ~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~~~ 250 (252)
T TIGR00010 193 LERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKRLF 250 (252)
T ss_pred HHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh
Confidence 3799999986421 1 1333334444555699999999975 7888764
No 75
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.30 E-value=5.6e-05 Score=68.43 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=96.2
Q ss_pred CceEEEecc-CCCC--CCChhcHHHHHHHHHHcCCceeeecCCCCCH-hhHHHHHhcCCcEEeecccccH----------
Q 025169 82 LGVVGIDLS-GNPT--KGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACCFEE---------- 147 (257)
Q Consensus 82 ~~vvg~~l~-g~~~--~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~~i~~~l~lg~~ri~Hg~~l~~---------- 147 (257)
++++|+-.. +.+. ..+...+...++.|++.|+|+.+|+.+.... ..+...++.| ..+.|++.-+.
T Consensus 129 ~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g-~~~~H~~~g~~~~~~~~~~~~ 207 (338)
T cd01307 129 DVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRG-DVLTHCFNGKPNGIVDEEGEV 207 (338)
T ss_pred CcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCC-CEEEeccCCCCCCCCCCCCcH
Confidence 467776543 1111 1233458899999999999999999876432 2333333334 56889987543
Q ss_pred -HHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCC-CEEecCCCCCCC---C--CChHHHHHHHHHhCCCCH
Q 025169 148 -EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF---S--TSVSREYDLAASAFSLGR 220 (257)
Q Consensus 148 -~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD~~~~~---~--~~l~~E~~~a~~~~~ls~ 220 (257)
+.+..+.++|+.+.++..... +...+..++++.|+ +.+++||.+..+ . ..+...+..+ ...+++.
T Consensus 208 ~~~~~~~~~~G~~~d~~~G~~~-------~~~~~~~~l~~~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l-~~~gi~~ 279 (338)
T cd01307 208 LPLVRRARERGVIFDVGHGTAS-------FSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKL-LALGMPL 279 (338)
T ss_pred HHHHHHHHhCCEEEEeCCCCCc-------hhHHHHHHHHHCCCCCeeecCCccccCCCCCccccHHHHHHHH-HHcCCCH
Confidence 567888888887664421100 01235677899997 778999975421 2 2355666665 4479999
Q ss_pred HHHHHH-HHHHHHHcCCC
Q 025169 221 REMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 221 ~~v~~~-~~n~~~~~~~~ 237 (257)
+++.++ +.|+++...++
T Consensus 280 ee~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 280 EEVIEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999998 58999998874
No 76
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.30 E-value=7.1e-05 Score=66.23 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=88.2
Q ss_pred hcHHHHHHHHHHcCCceeeecCCC-CCHhhHHHHH-hcCC--c--EEeeccc-ccHHHHHHHhcCCCcEEeccccccee-
Q 025169 99 TTFLPALKFAREQGLQITLHCGEI-PNKEEIQSML-DFLP--Q--RIGHACC-FEEEEWRKLKSSKIPVEICLTSNIRT- 170 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~-~~~~~i~~~l-~lg~--~--ri~Hg~~-l~~~~~~~l~~~~i~v~~cP~SN~~l- 170 (257)
+.|++..+.|++.|+|+++|+.+. .....+.+.+ +.|. . .+.||.. -+.+.++.+.+.|..+.++..+-...
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~ 215 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIF 215 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCccccc
Confidence 568899999999999999999864 1222333333 3453 2 5889984 57888999999999988875432110
Q ss_pred ccccC-CCcccHHHHHhcCC--CEEecCCCCCCCC----------CChHHHHHHHHHhCCCCHHHHHHHH-HHHHH
Q 025169 171 ETISS-LDIHHFVDLYKAQH--PLVLCTDDSGVFS----------TSVSREYDLAASAFSLGRREMFQLA-KSAVK 232 (257)
Q Consensus 171 ~~~~~-~~~~pi~~l~~~Gv--~v~lgTD~~~~~~----------~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~ 232 (257)
+..++ ....-++++++.|. .+.++||.|.... ..+...+...++..|++.+++.+++ .|+.+
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~ 291 (293)
T cd00530 216 GYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPAR 291 (293)
T ss_pred CCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHH
Confidence 00000 01123778888987 8999999865321 1224455555566799999999985 67654
No 77
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=98.29 E-value=5.1e-05 Score=70.69 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccC--CC-CCCChhcHHHHHHHHHHcCCceeeecCCCCC--HhhHHHHHh----cCC
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLSG--NP-TKGEWTTFLPALKFAREQGLQITLHCGEIPN--KEEIQSMLD----FLP 136 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~g--~~-~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~--~~~i~~~l~----lg~ 136 (257)
+++..+..++..+..+.|++|+.... .+ ...+..++.++++.|+++|.++.+|+-.... ...+..++. .|+
T Consensus 163 ~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~g~ 242 (415)
T cd01297 163 EEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRETGR 242 (415)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHhCC
Confidence 34455555554444445677776443 22 1346789999999999999999999964321 123334443 344
Q ss_pred -cEEeecccccH----------HHHHHHhcCCCcE--EecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCC---
Q 025169 137 -QRIGHACCFEE----------EEWRKLKSSKIPV--EICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV--- 200 (257)
Q Consensus 137 -~ri~Hg~~l~~----------~~~~~l~~~~i~v--~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~--- 200 (257)
-.|.|...... +.++..+++|+.+ +.||..... ..++.+|++. +.+++|||.++.
T Consensus 243 r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~--------~~~~~~l~~~-~~~~i~SDh~~~~~~ 313 (415)
T cd01297 243 PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS--------EDDVRRIMAH-PVVMGGSDGGALGKP 313 (415)
T ss_pred CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc--------HHHHHHHHcC-CCceeeeCCCcCCCC
Confidence 56889876644 5566666766555 577732111 4678899988 999999997652
Q ss_pred -CC--CChHHHHHHHHHhC-CCCHHHHHHH-HHHHHHHcCCC
Q 025169 201 -FS--TSVSREYDLAASAF-SLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 201 -~~--~~l~~E~~~a~~~~-~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
.. ..+..-+....... .++..+++++ +.|+++..++.
T Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 314 HPRSYGDFTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLA 355 (415)
T ss_pred CcchhCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 11 22222222222222 4899999987 68999999885
No 78
>PRK09237 dihydroorotase; Provisional
Probab=98.28 E-value=4.3e-05 Score=70.25 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=93.6
Q ss_pred CceEEEeccC-CCC--CCChhcHHHHHHHHHHcCCceeeecCCCCC-HhhHHHHHhcCCcEEeecccccH----------
Q 025169 82 LGVVGIDLSG-NPT--KGEWTTFLPALKFAREQGLQITLHCGEIPN-KEEIQSMLDFLPQRIGHACCFEE---------- 147 (257)
Q Consensus 82 ~~vvg~~l~g-~~~--~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~-~~~i~~~l~lg~~ri~Hg~~l~~---------- 147 (257)
++++|+...- .+. ..+++..+...+.+++.|+++.+|+++... ...+...+..| +.+.||+..++
T Consensus 148 ~~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g-~~~~H~~~~~~~~~~~~~~~~ 226 (380)
T PRK09237 148 DFIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPG-DILTHCFNGKPNRILDEDGEL 226 (380)
T ss_pred CcEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCC-CEEEecCCCCCCCccCCCCcc
Confidence 3577776431 111 112244555566677899999999976532 23333333334 57899997765
Q ss_pred -HHHHHHhcCCCcEEecccc-cceeccccCCCcccHHHHHhcCC-CEEecCCCCCCC---C--CChHHHHHHHHHhCCCC
Q 025169 148 -EEWRKLKSSKIPVEICLTS-NIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF---S--TSVSREYDLAASAFSLG 219 (257)
Q Consensus 148 -~~~~~l~~~~i~v~~cP~S-N~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD~~~~~---~--~~l~~E~~~a~~~~~ls 219 (257)
+......++|..+.++..+ +. ...+..+++++|+ +.+++||....+ + .++...+..+.+ .|++
T Consensus 227 ~~~a~~~l~~G~~~~ig~g~~~~--------~~~~~~~l~~~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~~-~g~~ 297 (380)
T PRK09237 227 RPSVLEALERGVRLDVGHGTASF--------SFKVAEAAIAAGILPDTISTDIYCRNRINGPVYSLATVMSKFLA-LGMP 297 (380)
T ss_pred hHHHHHHHHCCEEEEecCCCCcc--------cHHHHHHHHHCCCCceEEECCCCCCCcccchHhHHHHHHHHHHH-hCCC
Confidence 4556666778777655332 11 1134567889996 679999964432 2 246677776664 6999
Q ss_pred HHHHHHH-HHHHHHHcCCC
Q 025169 220 RREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 220 ~~~v~~~-~~n~~~~~~~~ 237 (257)
+++++++ +.|++++.+++
T Consensus 298 ~~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 298 LEEVIAAVTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999998 58999999884
No 79
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.28 E-value=4.7e-05 Score=71.17 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=112.0
Q ss_pred CCCchhhhhhHhhcccCCCcEEEEEEEe--eCCC---CHHH-HHHHHHHHHhhCCCceEEEeccCC-C-CCCChhcHHHH
Q 025169 33 RPVNTKNMNDACNGTRGKKIYVRLLLSI--DRRE---TTEA-AMETVKLALEMRDLGVVGIDLSGN-P-TKGEWTTFLPA 104 (257)
Q Consensus 33 ~~~~~~~~~~~~~a~~~~gir~~li~~~--~r~~---~~e~-~~~~~~~~~~~~~~~vvg~~l~g~-~-~~~~~~~~~~~ 104 (257)
+.+-.+.++...+..++.+++..+.... .... +.+. ..+.++...+ .++++|++-.-+ + .....+.+.+.
T Consensus 49 ~v~g~~~~~~~~~~a~~~p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~--~~~vvglgE~md~~~v~~~~~~l~~~ 126 (422)
T cd01295 49 NVAGVDGIEFMLEDAKKTPLDIFWMLPSCVPATPFETSGAELTAEDIKELLE--HPEVVGLGEVMDFPGVIEGDDEMLAK 126 (422)
T ss_pred cCCCHHHHHHHHHHHhCCCceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhc--CCCCcEEEEeccCccccCCcHHHHHH
Confidence 3444556666666667777766443311 1000 0000 0111222222 235777764311 1 12245678889
Q ss_pred HHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHH
Q 025169 105 LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDL 184 (257)
Q Consensus 105 ~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l 184 (257)
++.|++.|+++..|+-... ...+...+..|+.. .|+....++.++.+ ++|+.+.+.|.+-.. ++ ..+.+.
T Consensus 127 i~~A~~~g~~v~~Ha~g~~-~~~L~a~l~aGi~~-dH~~~~~eea~e~l-~~G~~i~i~~g~~~~-----~~--~~~~~~ 196 (422)
T cd01295 127 IQAAKKAGKPVDGHAPGLS-GEELNAYMAAGIST-DHEAMTGEEALEKL-RLGMYVMLREGSIAK-----NL--EALLPA 196 (422)
T ss_pred HHHHHhCCCEEEEeCCCCC-HHHHHHHHHcCCCC-CcCCCcHHHHHHHH-HCCCEEEEECcccHh-----hH--HHHHHh
Confidence 9999999999999995432 23455555556533 68777777777777 689998877655210 00 011122
Q ss_pred Hh--cCCCEEecCCCCCCCC----CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCC
Q 025169 185 YK--AQHPLVLCTDDSGVFS----TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 185 ~~--~Gv~v~lgTD~~~~~~----~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~ 236 (257)
+. .|.+++++||++...+ ..+...++.+. ..++++.+++++ +.|+++..++
T Consensus 197 l~~~~~~~i~l~TD~~~~~~~~~~g~~~~v~r~a~-~~g~s~~eal~~aT~n~A~~~gl 254 (422)
T cd01295 197 ITEKNFRRFMFCTDDVHPDDLLSEGHLDYIVRRAI-EAGIPPEDAIQMATINPAECYGL 254 (422)
T ss_pred hhhccCCeEEEEcCCCCchhhhhcchHHHHHHHHH-HcCCCHHHHHHHHhHHHHHHcCC
Confidence 22 5899999999974331 23444445443 469999999998 5899999887
No 80
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.12 E-value=0.00036 Score=59.81 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=85.7
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cC--CcEEeecccccHHHHHHHhcCCCcEEecccccceeccccC
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 175 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg--~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~ 175 (257)
+.|++.++.|++.|+|+.+|++.. +..+.+.+. .+ ...+.|+..-+.+.++.+.+.|+.+.+++..+..
T Consensus 108 ~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 179 (251)
T cd01310 108 EVFRAQLELAKELNLPVVIHSRDA--HEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLDLGFYISISGIVTFK------ 179 (251)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCCEEEeeeeeccC------
Confidence 568889999999999999999754 444444443 54 3568898766667888888899999888764211
Q ss_pred CCcccHHHHHhcC--CCEEecCCCCCCC--------C--CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHc
Q 025169 176 LDIHHFVDLYKAQ--HPLVLCTDDSGVF--------S--TSVSREYDLAASAFSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 176 ~~~~pi~~l~~~G--v~v~lgTD~~~~~--------~--~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~ 234 (257)
...-+.++.+.+ -++.++||.|... + ..+..-+..++...|++.+++.++ ..|+.+..
T Consensus 180 -~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ll 250 (251)
T cd01310 180 -NANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKRLF 250 (251)
T ss_pred -CCHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 111255665554 3799999976432 1 122333444444579999999887 57887753
No 81
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=98.09 E-value=0.0011 Score=56.08 Aligned_cols=213 Identities=16% Similarity=0.217 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhccceeeeeccCccccccCCCchhhhhhHh--------hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHH
Q 025169 5 SYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDAC--------NGTRGKKIYVRLLLSIDRRETTEAAMETVKLA 76 (257)
Q Consensus 5 ~y~~~~~~~~~~v~y~E~r~~p~~~~~~~~~~~~~~~~~~--------~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~ 76 (257)
.|...-+.|++.| +..-++|+.. +.++++.+.. ..+.++|++.....++.-+.-|.+..+.++..
T Consensus 16 DlekMa~sGI~~V--it~AhdP~~~-----~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L 88 (254)
T COG1099 16 DLEKMALSGIREV--ITLAHDPYPM-----KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEEL 88 (254)
T ss_pred HHHHHHHhChhhh--hhcccCCCCc-----ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHH
Confidence 4444555666654 3455555432 2344443322 34577899999999987654444455566555
Q ss_pred HhhC-CCceEEEeccCCCCCCC--hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh------cCCcE--Eeecccc
Q 025169 77 LEMR-DLGVVGIDLSGNPTKGE--WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD------FLPQR--IGHACCF 145 (257)
Q Consensus 77 ~~~~-~~~vvg~~l~g~~~~~~--~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~------lg~~r--i~Hg~~l 145 (257)
..+- +.+++++|=-|-+...+ .+.|+.-.++|+++++|+.+|.......+.+...++ +.++. |.|.
T Consensus 89 ~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~--- 165 (254)
T COG1099 89 EELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV--- 165 (254)
T ss_pred HhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhcc---
Confidence 5443 44688887555433322 256888899999999999999988766554433332 33433 5665
Q ss_pred cHHHHHHHhcCC--CcEEecccccceeccccCCCcccHHHHHhcC-CCEEecCCCC-CCCC-CChHHHHHHHHHhCCCCH
Q 025169 146 EEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDLYKAQ-HPLVLCTDDS-GVFS-TSVSREYDLAASAFSLGR 220 (257)
Q Consensus 146 ~~~~~~~l~~~~--i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G-v~v~lgTD~~-~~~~-~~l~~E~~~a~~~~~ls~ 220 (257)
+.+.++.+-+++ +++++-|. ++.. . --+.-..+.| -++-++||.. +..+ ..+.+--..+ +.-|++.
T Consensus 166 N~etv~~vld~e~~vGlTvqPg---Klt~----~-eAveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m-~~~gv~~ 236 (254)
T COG1099 166 NEETVDEVLDEEFYVGLTVQPG---KLTV----E-EAVEIVREYGAERIILNSDAGSAASDPLAVPRTALEM-EERGVGE 236 (254)
T ss_pred cHHHHHHHHhccceEEEEecCC---cCCH----H-HHHHHHHHhCcceEEEecccccccccchhhhHHHHHH-HHhcCCH
Confidence 557777666555 56677772 3332 0 1133344666 6899999943 2222 2333322222 2369999
Q ss_pred HHHHHHH-HHHHHHcCC
Q 025169 221 REMFQLA-KSAVKFIFA 236 (257)
Q Consensus 221 ~~v~~~~-~n~~~~~~~ 236 (257)
+++.+.+ .|+.+..++
T Consensus 237 ~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 237 EEIEKVVRENALSFYGL 253 (254)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 9999986 687766544
No 82
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=97.98 E-value=0.00032 Score=67.79 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCcEEeecccccHHHHHHHhcCCCcEEeccccc----------ceec----cc-cCC-CcccHHHHHhcCCCEEecCCCC
Q 025169 135 LPQRIGHACCFEEEEWRKLKSSKIPVEICLTSN----------IRTE----TI-SSL-DIHHFVDLYKAQHPLVLCTDDS 198 (257)
Q Consensus 135 g~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN----------~~l~----~~-~~~-~~~pi~~l~~~Gv~v~lgTD~~ 198 (257)
|...-+|+..++.+++..+..+|+...|||+|+ +++- +. .++ ...|+... +.+.++++|||+.
T Consensus 175 g~~I~gHap~l~~~eL~~~~~aGi~~dHe~~s~~ea~e~~~~Gm~~~ir~gs~~~n~~~~~~~~~~-~~~~~~~l~TD~~ 253 (552)
T TIGR01178 175 NKVIDGHCPGLSGKLLNKYISAGISNDHESTSIEEAREKLRLGMKLMIREGSAAKNLEALHPLINE-KNCRSLMLCTDDR 253 (552)
T ss_pred CCEEEecCCCCCHHHHHHHHHcCCCCCcCcCCHHHHHHHHHCCCEEEEeCCccccCHHHHHHHHhh-cCCceEEEEeCCC
Confidence 433445666666666666666666666666664 2221 00 000 01122211 4679999999953
Q ss_pred CCC---C-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 199 GVF---S-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 199 ~~~---~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
... . ..|..-++.+.. .|+++.++++| +.|++++..+++
T Consensus 254 ~~~~~~~~g~l~~~v~~ai~-~g~~~~~Al~maT~npA~~lgl~~ 297 (552)
T TIGR01178 254 HVNDILNEGHINHIVRRAIE-HGVDPFDALQMASINPAEHFGIDV 297 (552)
T ss_pred ChhHHHhcCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCC
Confidence 222 1 345555666654 68999999998 479999999864
No 83
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=97.96 E-value=3.3e-05 Score=71.05 Aligned_cols=100 Identities=6% Similarity=-0.073 Sum_probs=71.5
Q ss_pred cEEeecccccHHHHHHHhcCC--CcEEecccccceeccccCCCcccHHHH--HhcCCCEEecCCCCCCCCCChHHHHHHH
Q 025169 137 QRIGHACCFEEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDL--YKAQHPLVLCTDDSGVFSTSVSREYDLA 212 (257)
Q Consensus 137 ~ri~Hg~~l~~~~~~~l~~~~--i~v~~cP~SN~~l~~~~~~~~~pi~~l--~~~Gv~v~lgTD~~~~~~~~l~~E~~~a 212 (257)
..|.||+++++++++++.+.+ -.+.+||.||...+. ++ +.+|+..+ ...+-.+.+++|.-+....+|.++++.+
T Consensus 241 ~li~dg~Hv~~~~~~~~~r~~g~~~~~lvtD~~~~~G~-~~-g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l 318 (374)
T cd00854 241 ELIADGIHVHPAAVRLAYRAKGADKIVLVTDAMAAAGL-PD-GEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNM 318 (374)
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCCcEEEEeccccccCC-CC-CeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHH
Confidence 467899999999999988774 567889999887764 21 34443321 0123345556554333346899999998
Q ss_pred HHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 213 ASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 213 ~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+..++++.+++++ +.|+++..++++
T Consensus 319 ~~~~~l~~~~al~~aT~npA~~lg~~~ 345 (374)
T cd00854 319 VKWGGCPLEEAVRMASLNPAKLLGLDD 345 (374)
T ss_pred HHhhCCCHHHHHHHHhHHHHHHcCCCC
Confidence 88778999999998 579999998874
No 84
>PRK09236 dihydroorotase; Reviewed
Probab=97.93 E-value=9.7e-05 Score=69.49 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHH---HHHhcCCc----EEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQ---SMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~---~~l~lg~~----ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
..++.++|++.|.++++|..++ .+++. .+-..|.+ .-.|..++++++++. .+..+.+||. ++...
T Consensus 218 v~~~~~la~~~~~~~hi~h~st--~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~---~~~~~~~~Pp--lr~~~- 289 (444)
T PRK09236 218 SSLAVSLAKKHGTRLHVLHIST--AKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR---LGNLIKCNPA--IKTAS- 289 (444)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc---cCceEEECCC--CCCHH-
Confidence 4567888999999999977665 33332 22223433 335888999988764 4888999995 44443
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCC-------------CCChHHHHH----HHHHhCCCCHHHHHHH-HHHHHHHcC
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVF-------------STSVSREYD----LAASAFSLGRREMFQL-AKSAVKFIF 235 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~-------------~~~l~~E~~----~a~~~~~ls~~~v~~~-~~n~~~~~~ 235 (257)
...++.++++.|+..+||||..... +.+..+.+. ......+++..+++++ +.|+++..+
T Consensus 290 ---~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA~~lg 366 (444)
T PRK09236 290 ---DREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFD 366 (444)
T ss_pred ---HHHHHHHHHhCCCCcEEECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHHHhcC
Confidence 5678999999999999999975431 112222211 1112247999999997 689999999
Q ss_pred CC
Q 025169 236 AN 237 (257)
Q Consensus 236 ~~ 237 (257)
++
T Consensus 367 l~ 368 (444)
T PRK09236 367 IK 368 (444)
T ss_pred CC
Confidence 85
No 85
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=97.92 E-value=0.00012 Score=70.32 Aligned_cols=156 Identities=11% Similarity=0.059 Sum_probs=104.6
Q ss_pred ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHhc
Q 025169 83 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKS 155 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~~ 155 (257)
|.+||.+..+ +..+++.+.++++.|++.|+++.+|+.-......+..++..+.++..|.++. .|+.++++++
T Consensus 213 GA~gfKi~~d-~g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~~g~~iH~~H~egaggghapdii~~~~~ 291 (568)
T PRK13207 213 GAIGLKLHED-WGATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGE 291 (568)
T ss_pred CCCEEeecCC-CCCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhcCCCEEEEEeecCCCcCCchHHHHHhhc
Confidence 5667765432 3457789999999999999999999954332334556788889999999884 4889999999
Q ss_pred CCCcE-EecccccceeccccC--------------------CCcccH--------HHHHhcCCCEEecCCCCCCCC--CC
Q 025169 156 SKIPV-EICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--TS 204 (257)
Q Consensus 156 ~~i~v-~~cP~SN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~lgTD~~~~~~--~~ 204 (257)
.++.- +.+||--+-...+.+ +....| --|+++|+.+.+|||.|.+.. .+
T Consensus 292 ~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~ 371 (568)
T PRK13207 292 PNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEV 371 (568)
T ss_pred CCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccccccccc
Confidence 99653 445554332222110 000011 237899999999999997743 56
Q ss_pred hHHHHHHHHHhC---CCC-------H-HH----HHHHHHHHHHHcCCChH
Q 025169 205 VSREYDLAASAF---SLG-------R-RE----MFQLAKSAVKFIFANGR 239 (257)
Q Consensus 205 l~~E~~~a~~~~---~ls-------~-~~----v~~~~~n~~~~~~~~~~ 239 (257)
.++-++.+.+.. |.. + +- +...+.|++.++++++.
T Consensus 372 ~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~T~npA~alG~~~~ 421 (568)
T PRK13207 372 IIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKYTINPAIAHGISHE 421 (568)
T ss_pred hhHHHHHHHHHHHccCCCCcccccCccchHHHHHHHHhHHHHHHcCCCcC
Confidence 777777777542 221 1 11 44457999999998753
No 86
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=97.91 E-value=6.9e-05 Score=68.88 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=85.7
Q ss_pred hcHHHHHHHHHHcCCceee-ecCCCCCHhhHHHHHhcCC----cEEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 99 TTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDFLP----QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~-Ha~E~~~~~~i~~~l~lg~----~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
..+.++.++|++.|.++++ |++.....+.+..+.+.|. +...|..+++++++.. .+..+-+||.. +.-
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~---~~~~~k~~Ppl----r~~ 244 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES---YDTNAKVNPPL----RSE 244 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc---cCCceEEcCCC----CCH
Confidence 3567888999999999998 6642111133344444454 3456888999888643 46667778842 210
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCCC-CCh--HH---------HHHH------HHHhCCCCHHHHHHH-HHHHHHHc
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSV--SR---------EYDL------AASAFSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l--~~---------E~~~------a~~~~~ls~~~v~~~-~~n~~~~~ 234 (257)
-...++.++++.|+.++||||....+. ..+ +. |+.+ +.+...++.++++++ +.|+++..
T Consensus 245 --~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~~~~~~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~l 322 (374)
T cd01317 245 --EDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKIL 322 (374)
T ss_pred --HHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhhCCCcHhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 035689999999999999999866543 111 11 2222 222235799999998 58999999
Q ss_pred CCCh
Q 025169 235 FANG 238 (257)
Q Consensus 235 ~~~~ 238 (257)
+++.
T Consensus 323 gl~~ 326 (374)
T cd01317 323 GLPP 326 (374)
T ss_pred CCCC
Confidence 9863
No 87
>PRK10812 putative DNAse; Provisional
Probab=97.64 E-value=0.0015 Score=57.36 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=92.4
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCC---cEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP---QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~---~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.|++..+.|++.|+|+.+|+-.. ...+.+.++ .+. ..+.||..-+.+.++.+.+.|..+.+.+....+
T Consensus 111 ~vf~~ql~lA~e~~~Pv~iH~r~a--~~~~l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~~----- 183 (265)
T PRK10812 111 ESFRHHIQIGRELNKPVIVHTRDA--RADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFR----- 183 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEECeeeecC-----
Confidence 557888899999999999998643 334444554 333 358899977888999999999988876432211
Q ss_pred CCCcccHHHHHhcC--CCEEecCCCCCCC---------C-CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCChH
Q 025169 175 SLDIHHFVDLYKAQ--HPLVLCTDDSGVF---------S-TSVSREYDLAASAFSLGRREMFQLA-KSAVKFIFANGR 239 (257)
Q Consensus 175 ~~~~~pi~~l~~~G--v~v~lgTD~~~~~---------~-~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~~~~~~ 239 (257)
...-+.++.+.+ =.+.+.||.|-.. . ..+..-+..+++..|++.+++.+.+ .|+.+...++..
T Consensus 184 --~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~lf~~~~~ 259 (265)
T PRK10812 184 --NAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARLFHIDAS 259 (265)
T ss_pred --ccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCChH
Confidence 112366777765 3799999987431 1 2344545666667899999999985 788888777553
No 88
>PRK07575 dihydroorotase; Provisional
Probab=97.51 E-value=0.0005 Score=64.58 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=86.1
Q ss_pred hcHHHHHHHHHHcCCceee-ecCCCCCHhhHHHHHh-----cCCcEEeecccccHHHHHHHhcCCCcEEecccccceecc
Q 025169 99 TTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLD-----FLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTET 172 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~-Ha~E~~~~~~i~~~l~-----lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~ 172 (257)
..++++.++|++.|.++|+ |++ + .+++..+.+ ..++..-|=++++++++. +.+...-+||. ++...
T Consensus 212 ~av~~~~~la~~~g~~lhi~HiS-t--~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~---~~~~~~k~~PP--LR~~~ 283 (438)
T PRK07575 212 LATRLALKLSKKYQRRLHILHLS-T--AIEAELLRQDKPSWVTAEVTPQHLLLNTDAYE---RIGTLAQMNPP--LRSPE 283 (438)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC-C--HHHHHHHHHhcCCCEEEEEchhhheeCHHHHh---CCCceEEEeCC--CCCHH
Confidence 4467788999999999999 997 3 444332221 122333344888888765 35667777886 44433
Q ss_pred ccCCCcccHHHHHhcCCCEEecCCCCCCCC-----------CCh-HHHHHHHHHh-----CCCCHHHHHHH-HHHHHHHc
Q 025169 173 ISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-----------TSV-SREYDLAASA-----FSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 173 ~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-----------~~l-~~E~~~a~~~-----~~ls~~~v~~~-~~n~~~~~ 234 (257)
...++.++++.|+..+|+||..+.+. ..+ ..|+.+.+.. .+++..+++++ +.|+++..
T Consensus 284 ----d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~l 359 (438)
T PRK07575 284 ----DNEALWQALRDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAY 359 (438)
T ss_pred ----HHHHHHHHHhCCCCCEEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHc
Confidence 45689999999999999999765431 222 3444333321 36899999998 58999999
Q ss_pred CCC
Q 025169 235 FAN 237 (257)
Q Consensus 235 ~~~ 237 (257)
+++
T Consensus 360 gl~ 362 (438)
T PRK07575 360 GIP 362 (438)
T ss_pred CCC
Confidence 884
No 89
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=97.47 E-value=0.018 Score=53.65 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=105.0
Q ss_pred CchhhhhhHhhccc-CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEE--EeccCCCCCCChhcHHHHHHHHHHc
Q 025169 35 VNTKNMNDACNGTR-GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVG--IDLSGNPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 35 ~~~~~~~~~~~a~~-~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg--~~l~g~~~~~~~~~~~~~~~~A~~~ 111 (257)
+..+.++...+..+ ...+...+...+.+....+...+..++. ..+++| |...+.+ ..+...+.++++.++++
T Consensus 85 ~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~----~~Gv~g~~f~~~~~~-~~~~~~l~~~~~~a~~~ 159 (411)
T TIGR00857 85 DTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK----EAGAVGRMFTDDGSE-VQDILSMRRALEYAAIA 159 (411)
T ss_pred CcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH----HCCcEEEEEEeCCcc-cCCHHHHHHHHHHHHHc
Confidence 33445554444333 2345555555555533322233332221 235677 5433222 23567899999999999
Q ss_pred CCceeeecCCCC---------------------CH----hhHHHHHhc----CCcEEeecccc-cHH---HHHHHhcCC-
Q 025169 112 GLQITLHCGEIP---------------------NK----EEIQSMLDF----LPQRIGHACCF-EEE---EWRKLKSSK- 157 (257)
Q Consensus 112 gl~v~~Ha~E~~---------------------~~----~~i~~~l~l----g~~ri~Hg~~l-~~~---~~~~l~~~~- 157 (257)
|+++.+|+.+.. ++ ..+..++.+ ++. .|-+++ +.+ .++..+++|
T Consensus 160 g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~--~~i~Hvs~~~~l~~i~~a~~~g~ 237 (411)
T TIGR00857 160 GVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCP--VHICHISTKESLELIVKAKSQGI 237 (411)
T ss_pred CCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCHHHHHHHHHHHHcCC
Confidence 999999975431 00 012223322 332 244444 233 444445665
Q ss_pred -CcEEecccccc-----------eeccccCCC----cccHHHHHhcCCCEEecCCCCCCC-------------CCChHHH
Q 025169 158 -IPVEICLTSNI-----------RTETISSLD----IHHFVDLYKAQHPLVLCTDDSGVF-------------STSVSRE 208 (257)
Q Consensus 158 -i~v~~cP~SN~-----------~l~~~~~~~----~~pi~~l~~~Gv~v~lgTD~~~~~-------------~~~l~~E 208 (257)
+..++||-.-+ ..+..|+++ ..++.+.+..|+..+|+||-.... +..-.+.
T Consensus 238 ~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~ 317 (411)
T TIGR00857 238 KITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTKEFAAAPPGIPGLET 317 (411)
T ss_pred cEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccCCHhhCCCCceeHHH
Confidence 66688983311 111122222 234778889999999999965321 1000111
Q ss_pred ----HHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 209 ----YDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 209 ----~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+.......+++..+++++ +.|+++..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~ 352 (411)
T TIGR00857 318 ALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPD 352 (411)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 111111236999999987 689999998854
No 90
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=97.42 E-value=0.0079 Score=58.14 Aligned_cols=194 Identities=11% Similarity=0.009 Sum_probs=109.1
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCcee
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQIT 116 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~ 116 (257)
++.++...++.++..+...+...... ... .+..++ ...|++||.+..+ +..++..+.++++.|+++|+++.
T Consensus 179 ~~~i~~~l~~a~~~pvn~g~~gkg~~-~~~---~~l~el----~~aGa~gfk~~~d-~g~t~~~L~~aLe~A~~~gv~Va 249 (572)
T PRK13309 179 PWNIRQMLRSIEGLPVNVGILGKGNS-YGR---GPLLEQ----AIAGVAGYKVHED-WGATAAALRHALRVADEVDIQVA 249 (572)
T ss_pred HHHHHHHHHHhccCCcCEEEEcCCCC-CCH---HHHHHH----HhcCcEEEEecCc-CCcCHHHHHHHHHHHHhcCCEEE
Confidence 34666666666666665444321111 111 222222 1236778876532 34578899999999999999999
Q ss_pred ee---cCCCCCHhhHHHHHhcCCcEEeecccc----cHHHHHHHhcCCCcE-Eecccccceeccc---------------
Q 025169 117 LH---CGEIPNKEEIQSMLDFLPQRIGHACCF----EEEEWRKLKSSKIPV-EICLTSNIRTETI--------------- 173 (257)
Q Consensus 117 ~H---a~E~~~~~~i~~~l~lg~~ri~Hg~~l----~~~~~~~l~~~~i~v-~~cP~SN~~l~~~--------------- 173 (257)
+| ..|....+.+.+++...+--+-|-... -|+.++.....+|.- +.+||--+-...+
T Consensus 250 iH~d~lnE~g~vE~~~aa~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~ 329 (572)
T PRK13309 250 VHTDSLNECGYVEDTIDAFEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNP 329 (572)
T ss_pred EeCCccccchhHHHHHHHhCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCC
Confidence 99 455522222222221111112222111 366677766666532 3344432221111
Q ss_pred --cC--------C---CcccHHHHHhcCCCEEecCCCCCCC--CCChHHHHHHHHHh----C----------CCCHHHHH
Q 025169 174 --SS--------L---DIHHFVDLYKAQHPLVLCTDDSGVF--STSVSREYDLAASA----F----------SLGRREMF 224 (257)
Q Consensus 174 --~~--------~---~~~pi~~l~~~Gv~v~lgTD~~~~~--~~~l~~E~~~a~~~----~----------~ls~~~v~ 224 (257)
|+ + ...+++.|+++|+.+++|||.|.+. +.+.+.-++.+... - .++..+.+
T Consensus 330 ~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~~p~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL 409 (572)
T PRK13309 330 NVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGENWLRAIQTADAMKAARGKLPEDAAGNDNFRVLRYV 409 (572)
T ss_pred CCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCCcccHHHHHHHHHHHHhccCCCCccCCCcccccHHHHH
Confidence 10 1 2467899999999999999998753 35667766666632 1 13344444
Q ss_pred H-HHHHHHHHcCCChH
Q 025169 225 Q-LAKSAVKFIFANGR 239 (257)
Q Consensus 225 ~-~~~n~~~~~~~~~~ 239 (257)
+ .+.|++.++++++.
T Consensus 410 ~~yT~n~A~a~g~e~~ 425 (572)
T PRK13309 410 AKITINPAITQGVSHV 425 (572)
T ss_pred HHHhHHHHHHcCcccC
Confidence 4 47999999988764
No 91
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=97.42 E-value=0.0025 Score=61.40 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=105.1
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
+.+.++.++.+++..+...... .. .+.++...+ .+.++|.+. ..+..+++.+.++++.|+++|+++++|+
T Consensus 178 ~~~l~aa~~~~in~g~~g~g~~-~~----~~~L~e~i~---aGa~gfK~h-~~y~~s~e~L~~al~~A~e~gv~V~iH~- 247 (567)
T TIGR01792 178 HRMLQAADGLPINFGFTGKGSG-SG----PAALIEQIE---AGACGLKVH-EDWGATPAAIDNALSVADEYDVQVAVHT- 247 (567)
T ss_pred HHHHHHhccCCccEEEEeCCcc-ch----HHHHHHHHH---cCCcEEEeC-CCCCCCHHHHHHHHHHHHHcCCEEEEeC-
Confidence 3344666778887544421111 11 122222222 345677654 3567889999999999999999999999
Q ss_pred CCCCH-hhHHHHHh-cCCcEEeeccc-------ccHHHHHHHhcCCCcE-EecccccceeccccC---------------
Q 025169 121 EIPNK-EEIQSMLD-FLPQRIGHACC-------FEEEEWRKLKSSKIPV-EICLTSNIRTETISS--------------- 175 (257)
Q Consensus 121 E~~~~-~~i~~~l~-lg~~ri~Hg~~-------l~~~~~~~l~~~~i~v-~~cP~SN~~l~~~~~--------------- 175 (257)
|+.++ ..+.+.++ .|- |-.|-++ --|+.++...+.+|.- +.+||--+-...+..
T Consensus 248 ET~~E~g~ve~t~~a~g~-rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~ 326 (567)
T TIGR01792 248 DTLNESGFVEDTIAAFKG-RTIHTYHTEGAGGGHAPDIIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKI 326 (567)
T ss_pred CCcccchHHHHHHHHHCC-CcchhHhhcCCCCCcHHHHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCC
Confidence 88654 22333443 222 2222211 1367778777777542 334443332221110
Q ss_pred -----C-----C---cccHHHHHhcCCCEEecCCCCCCCC-----CChHHHHHHHHHhCCC-------CHHH-----HHH
Q 025169 176 -----L-----D---IHHFVDLYKAQHPLVLCTDDSGVFS-----TSVSREYDLAASAFSL-------GRRE-----MFQ 225 (257)
Q Consensus 176 -----~-----~---~~pi~~l~~~Gv~v~lgTD~~~~~~-----~~l~~E~~~a~~~~~l-------s~~~-----v~~ 225 (257)
+ + +.-=..|.+.|+...++||+.++.. ...+++-..+.+..|. ...+ +..
T Consensus 327 ~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~~~~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~L~~ 406 (567)
T TIGR01792 327 PEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGEVVTRCWQTADKMKKQRGPLPGDSPGNDNNRVKRYVAK 406 (567)
T ss_pred cccchhhhhhccceeccccchhhhCCcEEEecCCchhhCcccceeechHHHHHHHHHhcCCCcccccCChhhhHHHHHHH
Confidence 0 0 0011347899999999999986532 3444554444333332 1122 555
Q ss_pred HHHHHHHHcCCChH
Q 025169 226 LAKSAVKFIFANGR 239 (257)
Q Consensus 226 ~~~n~~~~~~~~~~ 239 (257)
.+.|++.++++++.
T Consensus 407 yT~n~A~a~g~~~~ 420 (567)
T TIGR01792 407 YTINPAITHGISDY 420 (567)
T ss_pred HhHHHHHHcCcccC
Confidence 68999999998763
No 92
>PRK09875 putative hydrolase; Provisional
Probab=97.38 E-value=0.019 Score=51.10 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=86.1
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCC-CHhhHHHHHhcCC--cE--Eeeccc-ccHHHHHHHhcCCCcEEecccccceecc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLP--QR--IGHACC-FEEEEWRKLKSSKIPVEICLTSNIRTET 172 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~-~~~~i~~~l~lg~--~r--i~Hg~~-l~~~~~~~l~~~~i~v~~cP~SN~~l~~ 172 (257)
..|+.+.+.+++.|.|+++|.+-.. +.+-+.-+.+.|+ ++ |+|.-. .+++.+..++++|+.+++|-..-. ..
T Consensus 139 kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~--~~ 216 (292)
T PRK09875 139 KVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKN--SY 216 (292)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCc--cc
Confidence 4477777778889999999975432 2222333334566 44 789853 478889999999999999732100 00
Q ss_pred ccCC-CcccHHHHHhcC--CCEEecCCCCCCC--------C-CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHH
Q 025169 173 ISSL-DIHHFVDLYKAQ--HPLVLCTDDSGVF--------S-TSVSREYDLAASAFSLGRREMFQLA-KSAVKF 233 (257)
Q Consensus 173 ~~~~-~~~pi~~l~~~G--v~v~lgTD~~~~~--------~-~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~ 233 (257)
.++- ..--+..+.++| =+|-|++|-.... + ..++..+.-..+..|+|.+++.+|. .|..++
T Consensus 217 ~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~ 290 (292)
T PRK09875 217 YPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQF 290 (292)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHH
Confidence 1110 122367788888 3799999943221 1 3556666655666799999999996 677664
No 93
>PRK06361 hypothetical protein; Provisional
Probab=97.35 E-value=0.0088 Score=50.48 Aligned_cols=183 Identities=16% Similarity=0.072 Sum_probs=102.3
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCHHHHH-HHHHHHHhhCC--C--ceEEEeccCCCCCCChhcHHHHHHHHHHcCCc
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETTEAAM-ETVKLALEMRD--L--GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQ 114 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~e~~~-~~~~~~~~~~~--~--~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~ 114 (257)
++++++++.+.|+....+-.-....+..... ...+...+.+. + .+.|+-+.- .++.......+..++.+..
T Consensus 12 ~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~----~~~~~~~~~~~~~~~~~~~ 87 (212)
T PRK06361 12 PSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH----VPPKLIPKLAKKARDLGAE 87 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc----cCchhhchHHHHHHHCCCE
Confidence 4455566667788776553322211111111 11111222221 2 244554431 2223445555666666443
Q ss_pred -eeeecCCCCC-Hh---hHHHHHhcC-CcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcC
Q 025169 115 -ITLHCGEIPN-KE---EIQSMLDFL-PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ 188 (257)
Q Consensus 115 -v~~Ha~E~~~-~~---~i~~~l~lg-~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G 188 (257)
+.+| +.... +. ....+++.| .+.++|--.+..+.++.++++++.++++...+.. .....-+....+.|
T Consensus 88 ~~svH-~~~~~~~~~~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~-----~~~~~~l~~a~~~g 161 (212)
T PRK06361 88 IVVVH-GETIVEPVEEGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITARKGHS-----LTNGHVARIAREAG 161 (212)
T ss_pred EEEEC-CCCcchhhhhhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECCCCcc-----cchHHHHHHHHHhC
Confidence 5688 33211 11 113456655 5889998777778899999999999998632211 00111234455679
Q ss_pred CCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHH-HHHHH
Q 025169 189 HPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLA-KSAVK 232 (257)
Q Consensus 189 v~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~ 232 (257)
+++++|||.-...+..-++++...+...|++.+++..+. .|...
T Consensus 162 i~vv~~SDaH~~~d~~~~~~~~~i~~~~gl~~~~v~~~~~~~~~~ 206 (212)
T PRK06361 162 APLVINTDTHAPSDLITYEFARKVALGAGLTEKELEEALENNPKL 206 (212)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHH
Confidence 999999996532222235667777777899999999984 56544
No 94
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=97.35 E-value=0.0065 Score=53.75 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=98.3
Q ss_pred HHHHHHHhhCCCceEEEecc-C----CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCC-cEEeecc
Q 025169 71 ETVKLALEMRDLGVVGIDLS-G----NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP-QRIGHAC 143 (257)
Q Consensus 71 ~~~~~~~~~~~~~vvg~~l~-g----~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~-~ri~Hg~ 143 (257)
+....+.++.+ .++|+-+- + .++..+| +....+.|+..++|+.+|.+|... ...+.++ +++ |.|.||+
T Consensus 142 ~i~aa~reh~d-~ivGlKvR~s~~~~g~~GitP--l~la~~ia~~~klPlmvHigePp~--~~dEvlerL~~GDIitHcf 216 (386)
T COG3964 142 KIHAAFREHRD-VIVGLKVRVSTEDIGEYGITP--LTLALRIANDLKLPLMVHIGEPPV--LMDEVLERLRRGDIITHCF 216 (386)
T ss_pred HHHHHHHhCcC-cEEEEEEEeeeccccccCCch--HHHHHHHHhhcCCceEEecCCCCc--cHHHHHHhccCCceeeeec
Confidence 44444444443 47787653 2 2333344 556677788999999999999532 2344454 454 8999997
Q ss_pred cc-------cH----HHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCC-CEEecCCCCCCC--C---CChH
Q 025169 144 CF-------EE----EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF--S---TSVS 206 (257)
Q Consensus 144 ~l-------~~----~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD~~~~~--~---~~l~ 206 (257)
+- ++ .++++.+++|+.+-.--. ..++...--++++..|+ |-+|+||--+.+ + -++.
T Consensus 217 ngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG-------~asfsf~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla 289 (386)
T COG3964 217 NGKPNTILTDDGVVRAEVRRARERGVIFDAGHG-------RASFSFNVARRAIANGLLPDIISSDLHTITKLNGPVYDLA 289 (386)
T ss_pred cCCCCCccccchhHHHHHHHHHhcceEEEccCC-------cceeeHHHHHHHHhcCCCcceeeccceeeeecCchHHHHH
Confidence 53 12 357888899987643211 11112233577889997 899999954433 2 2454
Q ss_pred HHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 207 REYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 207 ~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
--|..... .||+..++++. +.|.+....+++
T Consensus 290 ~~mSKlla-lgmpl~~Vi~avT~npA~~i~l~~ 321 (386)
T COG3964 290 WIMSKLLA-LGMPLTDVINAVTHNPAVLIGLAE 321 (386)
T ss_pred HHHHHHHH-cCCcHHHHHHHHhcCHHHHhCccc
Confidence 44544432 69999999987 689999888763
No 95
>PRK06189 allantoinase; Provisional
Probab=97.32 E-value=0.0021 Score=60.67 Aligned_cols=129 Identities=14% Similarity=0.061 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHcCCce-eeecCCCCCHhhHHHHHhcCCcE----EeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 100 TFLPALKFAREQGLQI-TLHCGEIPNKEEIQSMLDFLPQR----IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v-~~Ha~E~~~~~~i~~~l~lg~~r----i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
.+.+++.+|++.|.++ ..|++-..+.+-+..+-..|.+. --|..++++++++.+ +...-++| ++....
T Consensus 220 ~v~~~l~la~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~---~~~~~~~P--plr~~~-- 292 (451)
T PRK06189 220 AVQRALLYAQETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERI---GAVAKCAP--PLRSRS-- 292 (451)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCc---CCceEEeC--CCCChh--
Confidence 4567788899999987 55664221122222333345432 238788888877543 44445556 223222
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCCCCC-----CChHH--------HHH------HHHHhCCCCHHHHHHH-HHHHHHHc
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSGVFS-----TSVSR--------EYD------LAASAFSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-----~~l~~--------E~~------~a~~~~~ls~~~v~~~-~~n~~~~~ 234 (257)
...++.++++.|+..+||||...... .++++ |+. .+....+++..+++++ +.|+++..
T Consensus 293 --~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~l 370 (451)
T PRK06189 293 --QKEELWRGLLAGEIDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRF 370 (451)
T ss_pred --hHHHHHHHHhCCCceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHh
Confidence 34578999999999999999754322 12211 111 1212346899999987 68999999
Q ss_pred CCC
Q 025169 235 FAN 237 (257)
Q Consensus 235 ~~~ 237 (257)
+++
T Consensus 371 gl~ 373 (451)
T PRK06189 371 GLP 373 (451)
T ss_pred CCC
Confidence 984
No 96
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=97.30 E-value=0.01 Score=57.31 Aligned_cols=156 Identities=12% Similarity=0.032 Sum_probs=96.0
Q ss_pred CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHh
Q 025169 82 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLK 154 (257)
Q Consensus 82 ~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~ 154 (257)
.|++||.+..+ +..++..+.++++.|+++|+++.+|+.-......+...+..-..|--|-+|. -|+.++...
T Consensus 218 aGA~GfKi~~d-~g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapd~~~~~~ 296 (573)
T PRK13206 218 GGAGGFKLHED-WGSTPAAIDACLRVADAAGVQVALHSDTLNEAGFVEDTLAAIAGRSIHAYHTEGAGGGHAPDIITVAS 296 (573)
T ss_pred CCCcEEeecCc-cCCCHHHHHHHHHHHHHhCCEEEEECCCccccchhhHHHHHhcCCeEEEEeccCCCcCcccHHHHhcC
Confidence 36788877543 3467889999999999999999999864332222233333222344455554 267777777
Q ss_pred cCCCcE-EecccccceeccccC--------------------CCcccH--------HHHHhcCCCEEecCCCCCCCC---
Q 025169 155 SSKIPV-EICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--- 202 (257)
Q Consensus 155 ~~~i~v-~~cP~SN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~lgTD~~~~~~--- 202 (257)
+.+|.- +.+||--+-...+.+ +....| -.|.+.|+.+++|||.+.+..
T Consensus 297 ~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e 376 (573)
T PRK13206 297 HPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGE 376 (573)
T ss_pred CCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccc
Confidence 777542 334443322221110 000111 348899999999999997543
Q ss_pred --CChHHHHHHHHHhCC----------CCHHHHHHH-HHHHHHHcCCCh
Q 025169 203 --TSVSREYDLAASAFS----------LGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 203 --~~l~~E~~~a~~~~~----------ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+.+.....+....+ ++..+.+++ +.|++.++++++
T Consensus 377 ~~~~~~q~a~~~~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~ 425 (573)
T PRK13206 377 VVLRTWQTAHVMKRRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDH 425 (573)
T ss_pred hhhhHHHHHHHHHhccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCc
Confidence 355566555544322 566777665 799999999865
No 97
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=97.30 E-value=0.03 Score=51.45 Aligned_cols=199 Identities=10% Similarity=0.057 Sum_probs=102.8
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCCC--CH-HHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRRE--TT-EAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~~--~~-e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
++.+.+..++.++.|+++.+..+..... .. +...+.+.....+.+.+..++...+ ...-....+.++.+.++..+.
T Consensus 105 ~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 183 (387)
T cd01308 105 MEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGVGEIAISDHR-SSQPTVEELARIAAEARVGGL 183 (387)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCcceEEEcCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 3445566677788899998876543311 11 1111222333334332333322111 111123455566666654332
Q ss_pred ------ceeeecCCCCC-HhhHHHHHhc-CC--cEEeecc-cccHH----HHHHHhcCCCcEEec-ccccceeccccCCC
Q 025169 114 ------QITLHCGEIPN-KEEIQSMLDF-LP--QRIGHAC-CFEEE----EWRKLKSSKIPVEIC-LTSNIRTETISSLD 177 (257)
Q Consensus 114 ------~v~~Ha~E~~~-~~~i~~~l~l-g~--~ri~Hg~-~l~~~----~~~~l~~~~i~v~~c-P~SN~~l~~~~~~~ 177 (257)
.+++|.++... .+.+.+.+.- |. +.+-|+. ..+.+ .++. .++|..+.+. +.+...+. -+.+.
T Consensus 184 ~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~v~i~~~~~~~~~~-~~~~~ 261 (387)
T cd01308 184 LGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVEF-AKMGGTIDLTSSIDPQFRK-EGEVR 261 (387)
T ss_pred hcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcceeECCcccCCHHHHHHHHHH-HHcCCcEEEECCCCccccc-cCccC
Confidence 48888987621 1233333332 54 2333332 23333 3443 4456645443 33322221 11111
Q ss_pred -cccHHHHHhcCCC---EEecCCCCC----CC-----------C-CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCC
Q 025169 178 -IHHFVDLYKAQHP---LVLCTDDSG----VF-----------S-TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 178 -~~pi~~l~~~Gv~---v~lgTD~~~----~~-----------~-~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~ 236 (257)
...+..+++.|+. +.++||..+ .. + .++..++..+....+++.++++++ +.|+++...+
T Consensus 262 ~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~ 341 (387)
T cd01308 262 PSEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKL 341 (387)
T ss_pred hHHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC
Confidence 2346788899973 899999411 10 1 246677776666567999999998 5899999987
Q ss_pred Ch
Q 025169 237 NG 238 (257)
Q Consensus 237 ~~ 238 (257)
++
T Consensus 342 ~~ 343 (387)
T cd01308 342 RK 343 (387)
T ss_pred CC
Confidence 63
No 98
>PRK10425 DNase TatD; Provisional
Probab=97.16 E-value=0.064 Score=46.91 Aligned_cols=126 Identities=16% Similarity=0.113 Sum_probs=84.8
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhc---C-CcEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF---L-PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l---g-~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.|++-++.|+++++|+.+|+-+. .+.+.+.++- . +..+-||+.=+.+.++.+.+.|..+.+.+.....-
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a--~~~~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~~---- 181 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDA--HERFMALLEPWLDKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDER---- 181 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc--hHHHHHHHHHhccCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeeccc----
Confidence 457778899999999999999644 3444444442 1 24688999889999999999998888766431110
Q ss_pred CCCcccHHHHHhcCC---CEEecCCCCCC-------------CC-CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHH
Q 025169 175 SLDIHHFVDLYKAQH---PLVLCTDDSGV-------------FS-TSVSREYDLAASAFSLGRREMFQLA-KSAVKF 233 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv---~v~lgTD~~~~-------------~~-~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~ 233 (257)
....++++.+ -+ .+.+-||+|-. +. ..+..-+..+++..+++.+++.+.+ .|+.+.
T Consensus 182 --~~~~~~~~~~-~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~l 255 (258)
T PRK10425 182 --RGLELRELLP-LIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANARTL 255 (258)
T ss_pred --ccHHHHHHHH-hCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0113344443 22 48899998732 11 3455556777777899999998875 677654
No 99
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=97.15 E-value=0.00059 Score=58.89 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=46.9
Q ss_pred cccHHHHHhcCCCEEecCCCCCC---CCCChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 178 IHHFVDLYKAQHPLVLCTDDSGV---FSTSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 178 ~~pi~~l~~~Gv~v~lgTD~~~~---~~~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
..++.+++++|+++++|||.+.. ...+++.++.......|+++++++++ +.|+++..++++
T Consensus 226 ~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~~pA~~lgl~~ 290 (304)
T PF13147_consen 226 RAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATSNPARILGLDD 290 (304)
T ss_dssp HHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTHHHHHHTTBTT
T ss_pred hHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 44678999999999999998764 33455555555555599999999998 589999999853
No 100
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.10 E-value=0.043 Score=48.00 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=87.3
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cCC--cEEeecccccHHHHHHHhcCCCcEEecccccceeccccC
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP--QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 175 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg~--~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~ 175 (257)
+.|.+-+++|+++++||.+|+-.. .+.+.+.+. .+. ..+-||+.=+.+..+.+.+.|..+.+.+..+..-
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a--~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~~~----- 186 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRT--HDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPR----- 186 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCc--cHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHCCCEEEeCccccccC-----
Confidence 557888999999999999999543 344445554 333 4588998888999999999999888776654321
Q ss_pred CCcccHHHHHhcCC---CEEecCCCCCCC----------CCChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHc
Q 025169 176 LDIHHFVDLYKAQH---PLVLCTDDSGVF----------STSVSREYDLAASAFSLGRREMFQLA-KSAVKFI 234 (257)
Q Consensus 176 ~~~~pi~~l~~~Gv---~v~lgTD~~~~~----------~~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~ 234 (257)
...++++++. + .+-+.||.|-.. ...+..-+..++...+++.+++.+.+ .|+.+..
T Consensus 187 --~~~~~~~~~~-ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N~~~lf 256 (258)
T PRK11449 187 --ASKTRDVIAK-LPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTLF 256 (258)
T ss_pred --cHHHHHHHHh-CChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 1124444432 3 488999997422 13455556666777899999998875 7876653
No 101
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=97.07 E-value=0.092 Score=47.58 Aligned_cols=137 Identities=10% Similarity=0.039 Sum_probs=84.4
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCc-EEeecccc-cHHHHHHHhcCCCc--EEecccccce--
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ-RIGHACCF-EEEEWRKLKSSKIP--VEICLTSNIR-- 169 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~-ri~Hg~~l-~~~~~~~l~~~~i~--v~~cP~SN~~-- 169 (257)
.+...+.++++.+++.|+++.+|+. ..+.-+...|+. -|.|.... +-+.++..+++|+. .++||..=..
T Consensus 112 ~~~~~l~~~~~~~~~~g~~v~~H~E-----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~ 186 (337)
T cd01302 112 VDDGTLMRTFLEIASRGGPVMVHAE-----RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDE 186 (337)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEeHH-----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCH
Confidence 3557788899999999999999985 233333335665 36776533 23556666777754 4788884211
Q ss_pred ---------eccccCCCc----ccHHHHHhcCCCEEecCCCCCCC---------------CC-C----hHHHHHHHHHhC
Q 025169 170 ---------TETISSLDI----HHFVDLYKAQHPLVLCTDDSGVF---------------ST-S----VSREYDLAASAF 216 (257)
Q Consensus 170 ---------l~~~~~~~~----~pi~~l~~~Gv~v~lgTD~~~~~---------------~~-~----l~~E~~~a~~~~ 216 (257)
.+..|+++. -.+.+.++.|+.-+|+||-.... +. . +..-+..+. ..
T Consensus 187 ~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~~~~~~-~~ 265 (337)
T cd01302 187 SMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGV-KR 265 (337)
T ss_pred HHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHHHHHHH-hc
Confidence 111122221 12556778999999999965421 11 1 111112222 35
Q ss_pred CCCHHHHHHH-HHHHHHHcCCCh
Q 025169 217 SLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 217 ~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+++..+++++ +.|+++..++++
T Consensus 266 ~i~~~~~~~~~s~~pA~~~gl~~ 288 (337)
T cd01302 266 GLSLETLVEILSENPARIFGLYP 288 (337)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCC
Confidence 7999999987 589999998854
No 102
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.05 E-value=0.034 Score=50.45 Aligned_cols=182 Identities=13% Similarity=0.013 Sum_probs=102.8
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-C--Cc
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQ 114 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-g--l~ 114 (257)
+.+...++.+++.|+.+...+...-..+++...+.++...++..+.+.=.|..| ...|+.+.+.+...++. + ++
T Consensus 114 d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ 190 (333)
T TIGR03217 114 DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAG---AMLPDDVRDRVRALKAVLKPETQ 190 (333)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCCce
Confidence 445566677888898876555444346788888888877777655333334444 34678888888887764 4 88
Q ss_pred eeeecCCCCCH--hhHHHHHhcCCcEEeec---------ccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHH
Q 025169 115 ITLHCGEIPNK--EEIQSMLDFLPQRIGHA---------CCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVD 183 (257)
Q Consensus 115 v~~Ha~E~~~~--~~i~~~l~lg~~ri~Hg---------~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~ 183 (257)
+-+|+..+.+- .+...+++.|+++|.=. ....+..+..+.+.|+. +.-|+. .+.+....-+..
T Consensus 191 ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~----tgidl~--~l~~~a~~~v~p 264 (333)
T TIGR03217 191 VGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDRLGWN----TGCDLF--KLMDAAEDIVRP 264 (333)
T ss_pred EEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHhcCCC----CCcCHH--HHHHHHHHHHHh
Confidence 88898877653 34567788899886322 22245666666665543 212211 111111112333
Q ss_pred HHhcCCCEEecCCCCCCCC--CChHHHHHHHHHhCCCCHHHHH-HHHH
Q 025169 184 LYKAQHPLVLCTDDSGVFS--TSVSREYDLAASAFSLGRREMF-QLAK 228 (257)
Q Consensus 184 l~~~Gv~v~lgTD~~~~~~--~~l~~E~~~a~~~~~ls~~~v~-~~~~ 228 (257)
++++-+++-.-|-..+..+ ++...=.+.+++.+|+++.+++ ++.+
T Consensus 265 ~~~~~~~~~~~~~~~Gyag~~s~~~~~~~~~~~~~~~~~~~i~~~~~~ 312 (333)
T TIGR03217 265 LMDRPVRVDRETLTLGYAGVYSSFLLHAERAAAKYGVDARDILVELGR 312 (333)
T ss_pred hccCCCcCChHHHHhhhhhhhhhHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 3333332222222223333 3444445566667999999974 4543
No 103
>PRK08392 hypothetical protein; Provisional
Probab=97.00 E-value=0.023 Score=48.19 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=56.2
Q ss_pred HHHhc-CCcEEeecccc-------c----HHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCC
Q 025169 130 SMLDF-LPQRIGHACCF-------E----EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 130 ~~l~l-g~~ri~Hg~~l-------~----~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~ 197 (257)
.++.. .++.++|--.. . ++.++.++++|+.+|++- + ...|+ ..-+..+.+.|+++++|||.
T Consensus 111 ~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~----~~~p~--~~~l~~~~~~G~~~~igSDA 183 (215)
T PRK08392 111 LALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-R----YRVPD--LEFIRECIKRGIKLTFASDA 183 (215)
T ss_pred HHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-C----CCCCC--HHHHHHHHHcCCEEEEeCCC
Confidence 34433 56899994211 1 234788999999999984 1 11121 11256778899999999995
Q ss_pred CCCCC-CChHHHHHHHHHhCCCCHHHHHH
Q 025169 198 SGVFS-TSVSREYDLAASAFSLGRREMFQ 225 (257)
Q Consensus 198 ~~~~~-~~l~~E~~~a~~~~~ls~~~v~~ 225 (257)
=.... .. +++....++..|+++++++.
T Consensus 184 H~~~~vg~-~~~a~~~~~~~g~~~~~~~~ 211 (215)
T PRK08392 184 HRPEDVGN-VSWSLKVFKKAGGKKEDLLF 211 (215)
T ss_pred CChHHCCc-HHHHHHHHHHcCCCHHHeec
Confidence 33332 23 56666666678999988754
No 104
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=96.92 E-value=0.081 Score=49.61 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=81.4
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCC----------------------------HhhHHHHHh----cCCc-EEeec
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPN----------------------------KEEIQSMLD----FLPQ-RIGHA 142 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~----------------------------~~~i~~~l~----lg~~-ri~Hg 142 (257)
.+.+.+.++++.|++.|+++.+|+....- ...+..++. .|+. -+.|.
T Consensus 159 ~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~ 238 (447)
T cd01315 159 VDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHL 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 35678999999999999999999853210 001222222 3433 24554
Q ss_pred ccc-cHHHHHHHhcCC--CcEEeccccccee-----------ccccCCC----cccHHHHHhcCCCEEecCCCCCCC---
Q 025169 143 CCF-EEEEWRKLKSSK--IPVEICLTSNIRT-----------ETISSLD----IHHFVDLYKAQHPLVLCTDDSGVF--- 201 (257)
Q Consensus 143 ~~l-~~~~~~~l~~~~--i~v~~cP~SN~~l-----------~~~~~~~----~~pi~~l~~~Gv~v~lgTD~~~~~--- 201 (257)
... .-+.++..+..| +.++.||-..... ...|+++ ...+.+.++.|...+||||-....
T Consensus 239 s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~ 318 (447)
T cd01315 239 SSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPEL 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHH
Confidence 321 223445555565 4556777532211 1111111 112455778899999999943211
Q ss_pred ----------------C--CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 202 ----------------S--TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 202 ----------------~--~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+ +.|..-+..+....+++.++++++ +.|+++..++++
T Consensus 319 k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~ 374 (447)
T cd01315 319 KLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSH 374 (447)
T ss_pred hccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 1 112222233344468999999987 589999999864
No 105
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=96.81 E-value=0.048 Score=52.56 Aligned_cols=192 Identities=9% Similarity=0.043 Sum_probs=108.0
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
+.++...++.+...+...+...... ...++ ..+. ...|++||.+..+ +..++..+.++++.|.++|.++.+
T Consensus 176 ~~l~~ml~aa~~~pin~g~~gkg~~-~~l~e---L~e~----~~aGA~GfK~~eD-~g~t~~~i~~aL~~A~~~dv~Vai 246 (567)
T cd00375 176 WNIKRMLQAADGLPVNIGFLGKGNG-SSPDA---LAEQ----IEAGACGLKLHED-WGATPAAIDTCLSVADEYDVQVAI 246 (567)
T ss_pred HHHHHHHHHhhcCCceEEEEecCcc-ccHHH---HHHH----HHcCCEEEEecCC-CCCCHHHHHHHHHHHHhhCCEEEE
Confidence 6677777776666665554432211 11222 2121 1235778776532 345788999999999999999999
Q ss_pred ecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHhcCCCcE-EecccccceeccccC--------------
Q 025169 118 HCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKSSKIPV-EICLTSNIRTETISS-------------- 175 (257)
Q Consensus 118 Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~~~~i~v-~~cP~SN~~l~~~~~-------------- 175 (257)
|+.-......+...+..-..|--|-+|. -|+.++...+.+|.- +.+||--+-...+.+
T Consensus 247 Hadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~ 326 (567)
T cd00375 247 HTDTLNESGFVEDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPN 326 (567)
T ss_pred ECCCCCcchHHHHHHHHhcCCeEEEEecCCCCcccchHHHHhcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCC
Confidence 9864332233333343222344555554 267777777777542 334443322211110
Q ss_pred ------CCccc-----H---HHHHhcCCCEEecCCCCCCCC-----CChHHHHHHHHHhCCCCH--------HH----HH
Q 025169 176 ------LDIHH-----F---VDLYKAQHPLVLCTDDSGVFS-----TSVSREYDLAASAFSLGR--------RE----MF 224 (257)
Q Consensus 176 ------~~~~p-----i---~~l~~~Gv~v~lgTD~~~~~~-----~~l~~E~~~a~~~~~ls~--------~~----v~ 224 (257)
+.... + -.|.+.|+-..++||+.++.. ...+++-..+.+..|..+ .. +.
T Consensus 327 ~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~~~r~~q~a~k~~~~~g~~~~~~~~~~n~r~~~~L~ 406 (567)
T cd00375 327 IPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEVILRTWQTAHKMKAQRGPLPEDSGDADNFRVKRYIA 406 (567)
T ss_pred CcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCccceeeechHHHHHHHHHhcCCCCcccccCchHHHHHHHH
Confidence 00001 1 236789999999999976553 344555444444445332 22 33
Q ss_pred HHHHHHHHHcCCCh
Q 025169 225 QLAKSAVKFIFANG 238 (257)
Q Consensus 225 ~~~~n~~~~~~~~~ 238 (257)
..+.|++.++++++
T Consensus 407 ~~Tin~A~alG~~~ 420 (567)
T cd00375 407 KYTINPAIAHGISH 420 (567)
T ss_pred HhhHHHHHHcCccc
Confidence 45799999999865
No 106
>PRK13985 ureB urease subunit beta; Provisional
Probab=96.81 E-value=0.058 Score=51.95 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=96.4
Q ss_pred ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHhc
Q 025169 83 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKS 155 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~~ 155 (257)
|++||.+.. .+..++..+..+++.|+++|+++.+|+........+...+..-..|--|-+|. -|+.++....
T Consensus 213 GA~GfK~~e-d~g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~ 291 (568)
T PRK13985 213 GAIGFKIHE-DWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGE 291 (568)
T ss_pred CCEEEEECC-ccCCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhHHHHHHhcCCeEEEEeccCCCccchhhHHHHcCC
Confidence 577887643 33457789999999999999999999975543333444443222344565555 2677777777
Q ss_pred CCCc-EEecccccceeccccC--------------------CCccc-----H---HHHHhcCCCEEecCCCCCCCC----
Q 025169 156 SKIP-VEICLTSNIRTETISS--------------------LDIHH-----F---VDLYKAQHPLVLCTDDSGVFS---- 202 (257)
Q Consensus 156 ~~i~-v~~cP~SN~~l~~~~~--------------------~~~~p-----i---~~l~~~Gv~v~lgTD~~~~~~---- 202 (257)
.+|. -+.+||--+-...+.+ +.... + --|.+.|+-..++||+.++..
T Consensus 292 ~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge~ 371 (568)
T PRK13985 292 HNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEV 371 (568)
T ss_pred CCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCcccce
Confidence 7754 2334443322221110 00001 1 236789999999999987653
Q ss_pred -CChHHHHHHHHHhC-----------CCCHHHHHHH-HHHHHHHcCCCh
Q 025169 203 -TSVSREYDLAASAF-----------SLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 203 -~~l~~E~~~a~~~~-----------~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
..++++-..+.+.. +++.++.+++ +.|++.++++++
T Consensus 372 ~~r~~q~a~k~~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~ 420 (568)
T PRK13985 372 ITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 420 (568)
T ss_pred eeehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCccc
Confidence 35556655554422 3555677775 799999999875
No 107
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=96.77 E-value=0.021 Score=49.60 Aligned_cols=182 Identities=20% Similarity=0.235 Sum_probs=104.0
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCC---HHHHHHHHHHHHhhCCCceE-----EEeccC-CCCCC--ChhcHHHHHHHHHH
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRET---TEAAMETVKLALEMRDLGVV-----GIDLSG-NPTKG--EWTTFLPALKFARE 110 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~---~e~~~~~~~~~~~~~~~~vv-----g~~l~g-~~~~~--~~~~~~~~~~~A~~ 110 (257)
.+.+.+++++.++...+++.-... .+...+.++.......+.++ |+|... .+... ..+.|++.+++|++
T Consensus 43 ~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~ 122 (255)
T PF01026_consen 43 RVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKE 122 (255)
T ss_dssp HHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHH
Confidence 334444457877777776664221 12223333333222333343 444421 11111 12568888999999
Q ss_pred cCCceeeecCCCCCHhhHHHHHh-cCC---cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHh
Q 025169 111 QGLQITLHCGEIPNKEEIQSMLD-FLP---QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYK 186 (257)
Q Consensus 111 ~gl~v~~Ha~E~~~~~~i~~~l~-lg~---~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~ 186 (257)
+++|+.+|+--. ...+.+.+. .+. ..+-|++.-+.+.++.+.+.|..+.+.+..+.+-. .-..++++
T Consensus 123 ~~~pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~~~-------~~~~~~~~ 193 (255)
T PF01026_consen 123 LNLPVSIHCRKA--HEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFKNS-------KKVRELIK 193 (255)
T ss_dssp HTCEEEEEEESH--HHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGSTTS-------HHHHHHHH
T ss_pred hCCcEEEecCCc--HHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcCceEEeccccccccc-------HHHHHHHh
Confidence 999999999432 334444443 332 56889998899999998899999998886544211 12344443
Q ss_pred c-CC-CEEecCCCCCC---------CC-CChHHHHHHHHHhCCCCHHHHHHHH-HHHHH
Q 025169 187 A-QH-PLVLCTDDSGV---------FS-TSVSREYDLAASAFSLGRREMFQLA-KSAVK 232 (257)
Q Consensus 187 ~-Gv-~v~lgTD~~~~---------~~-~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~ 232 (257)
. +. ++-|-||.|-. +. .++.+-+..+++..+++.+++.+.+ .|+.+
T Consensus 194 ~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~~r 252 (255)
T PF01026_consen 194 AIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEIKGISLEELAQIIYENAKR 252 (255)
T ss_dssp HS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHHHH
T ss_pred cCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 11 58999998632 11 3566667777777899999999986 56654
No 108
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=96.76 E-value=0.016 Score=54.54 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=80.7
Q ss_pred hcHHHHHHHHHHcCCceee-ecCCCCCHhhHHHHHhcCCc----EEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 99 TTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~-Ha~E~~~~~~i~~~l~lg~~----ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
..+.+++++|++.|+++++ |.+-....+.+..+-..|.+ ..-|..++++++++ +.+..+.++|.. ....
T Consensus 216 ~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~---~~~~~~~~~Ppl--r~~~- 289 (443)
T TIGR03178 216 EAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVP---DGGTLAKCAPPI--RDLA- 289 (443)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhh---CcCcceEEcCCC--CChH-
Confidence 4467788889999999855 77522112333344445543 23566777877763 357777778853 1111
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCC-----CCC--------------hHHHHHHHHHhCCCCHHHHHHH-HHHHHHH
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVF-----STS--------------VSREYDLAASAFSLGRREMFQL-AKSAVKF 233 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~-----~~~--------------l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~ 233 (257)
....+.+.++.|+..+|+||-.... ..+ +..-+..+....+++.++++++ +.|+++.
T Consensus 290 ---~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~ 366 (443)
T TIGR03178 290 ---NQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKR 366 (443)
T ss_pred ---HHHHHHHHHHcCCccEEeCCCCCCChHHcCcCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHH
Confidence 2345677788899999999964321 111 1111222323457999999997 6899999
Q ss_pred cCCC
Q 025169 234 IFAN 237 (257)
Q Consensus 234 ~~~~ 237 (257)
.+++
T Consensus 367 ~g~~ 370 (443)
T TIGR03178 367 FGLA 370 (443)
T ss_pred cCCC
Confidence 9983
No 109
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=96.63 E-value=0.13 Score=46.89 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCH-hhHHHHHhcCCcEEeecccccH-----------HHHHHHhcCCCcEEec-c
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACCFEE-----------EEWRKLKSSKIPVEIC-L 164 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~-~~i~~~l~lg~~ri~Hg~~l~~-----------~~~~~l~~~~i~v~~c-P 164 (257)
+..+.+.+..+ +.|+|+.+|++++... ..+...+..| +.+.|+..-.+ +.+....+.|+.+-.+ .
T Consensus 165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~~~g-~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg 242 (365)
T TIGR03583 165 PLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALMEKG-DVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHG 242 (365)
T ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHhcCC-CeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCC
Confidence 44455544444 6899999999987532 3444444446 57899876543 5555555667665533 1
Q ss_pred cccceeccccCCCcccHHHHHhcC-CCEEecCCCCCC---CC--CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 165 TSNIRTETISSLDIHHFVDLYKAQ-HPLVLCTDDSGV---FS--TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 165 ~SN~~l~~~~~~~~~pi~~l~~~G-v~v~lgTD~~~~---~~--~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
...... .-...+...+ +.++.+||-+.. ++ .++..-++.++ ..|+++++++++ +.|+++..+++
T Consensus 243 ~~~~~~--------~~~~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-~~g~~~~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 243 TASFSF--------HVAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-ALGYSLEEVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCchH--------HHHHHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 111100 0122333445 446677775322 12 25777788777 479999999997 57999999886
Q ss_pred h
Q 025169 238 G 238 (257)
Q Consensus 238 ~ 238 (257)
+
T Consensus 314 ~ 314 (365)
T TIGR03583 314 Q 314 (365)
T ss_pred C
Confidence 3
No 110
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.47 E-value=0.062 Score=48.88 Aligned_cols=118 Identities=14% Similarity=-0.023 Sum_probs=77.3
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc---CCc
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQ 114 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~---gl~ 114 (257)
+.+...++.+++.|+.+...++..-..+++...+.++.+.++..+.+.=.|..| ...|+.+.+.++..++. +++
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ 191 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAG---ALLPEDVRDRVRALRAALKPDTQ 191 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCCe
Confidence 345556677788898887766555446788877887777776655332233334 34678888888888765 688
Q ss_pred eeeecCCCCCH--hhHHHHHhcCCcEEee---------cccccHHHHHHHhcCCC
Q 025169 115 ITLHCGEIPNK--EEIQSMLDFLPQRIGH---------ACCFEEEEWRKLKSSKI 158 (257)
Q Consensus 115 v~~Ha~E~~~~--~~i~~~l~lg~~ri~H---------g~~l~~~~~~~l~~~~i 158 (257)
+-+|+..+.+- .+...+++.|++++.= |....+..+..+.+.|+
T Consensus 192 ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 192 VGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred EEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 99999877653 3456778889887632 12224566666665554
No 111
>PRK08044 allantoinase; Provisional
Probab=96.35 E-value=0.026 Score=53.26 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=80.7
Q ss_pred hcHHHHHHHHHHcCCcee-eecCCCCCHhhHHHHHhcCCc----EEeecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 99 TTFLPALKFAREQGLQIT-LHCGEIPNKEEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~-~Ha~E~~~~~~i~~~l~lg~~----ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
....+++.+|++.|.+++ .|.+-..+.+.+..+...|.+ .--|-..++++++.. .|...-++|.. ..-
T Consensus 222 ~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~---~~~~~k~~PPl----r~~ 294 (449)
T PRK08044 222 EAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE---IGTLAKCSPPI----RDL 294 (449)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC---CCCcEEEcCCC----CCh
Confidence 346678888999999884 577521122333444444543 235777788887643 36667777743 211
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCCC-C---C--------------hHHHHHHHHHhCCCCHHHHHHH-HHHHHHHc
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVFS-T---S--------------VSREYDLAASAFSLGRREMFQL-AKSAVKFI 234 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~---~--------------l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~ 234 (257)
. ....+.+.+..|+..+|+||-.+... . + +..-+..+....+++.++++++ +.|+++..
T Consensus 295 ~--d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~l 372 (449)
T PRK08044 295 E--NQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIF 372 (449)
T ss_pred H--HHHHHHHHHhCCCceEEEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHh
Confidence 1 13356777788999999999544211 0 1 1111223333457999999997 58999999
Q ss_pred CCC
Q 025169 235 FAN 237 (257)
Q Consensus 235 ~~~ 237 (257)
+++
T Consensus 373 gl~ 375 (449)
T PRK08044 373 GLQ 375 (449)
T ss_pred CCC
Confidence 984
No 112
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=96.26 E-value=0.09 Score=50.78 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=105.7
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCcee
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQIT 116 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~ 116 (257)
++.++...++.+...+...+...... ..+++ ..++ ...|++||.+..+ +..++..+..+++.|+++|+++.
T Consensus 175 ~~~i~~~l~aa~~~pvN~g~~gkG~~-s~~ae---L~el----i~aGA~GfKi~ed-~g~t~~~i~~aL~~A~~~dv~Va 245 (569)
T PRK13308 175 PFNTGRMLQAAEAWPVNFGFLGRGNS-SKPAA---LIEQ----VEAGACGLKIHED-WGAMPAAIDTCLEVADEYDFQVQ 245 (569)
T ss_pred HHHHHHHHHHHhcCCccEEEEcCCcc-cCHHH---HHHH----HHCCCCEEeecCC-CCCCHHHHHHHHHHHHhcCCEEE
Confidence 44565555555555555444422211 12222 1111 1235677776532 34477889999999999999999
Q ss_pred eecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHhcCCCcE-EecccccceeccccC-------------
Q 025169 117 LHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKSSKIPV-EICLTSNIRTETISS------------- 175 (257)
Q Consensus 117 ~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~~~~i~v-~~cP~SN~~l~~~~~------------- 175 (257)
+|+........+...++.-..|--|-+|+ -|+.++++.+.+|.- +.+||--+-...+.+
T Consensus 246 iHadtlne~g~~E~t~~a~~gr~iH~~H~egaggghapd~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~ 325 (569)
T PRK13308 246 LHTDTLNESGFVEDTLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNP 325 (569)
T ss_pred EeCCCcCcchHHHHHHHHhcCCeEEEEeccCCccCchhHHHHHhCCCCccCCCCCCCCCCccCchhhhcCeEEEecCCCC
Confidence 99865433333333343211344454444 377888888877642 344543332221110
Q ss_pred -------CCcccH--------HHHHhcCCCEEecCCCCCCCCCChHHHHHHH----HHh---C-CCCHHH----------
Q 025169 176 -------LDIHHF--------VDLYKAQHPLVLCTDDSGVFSTSVSREYDLA----ASA---F-SLGRRE---------- 222 (257)
Q Consensus 176 -------~~~~pi--------~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a----~~~---~-~ls~~~---------- 222 (257)
+....| --|.+.|+-..++||+.++.. +.+++..+ .+. . .++.++
T Consensus 326 ~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~mgr--~~e~i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~ 403 (569)
T PRK13308 326 DVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGMGR--IAEVIARTWQLASKMKDQRGPLPEDRGTFADNARIK 403 (569)
T ss_pred CCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHHHhH--HHHHHHHHHHHHHHHhhcCCCCCcccccCCchhhhh
Confidence 000011 236789999999999876653 33443333 322 1 255554
Q ss_pred --HHHHHHHHHHHcCCCh
Q 025169 223 --MFQLAKSAVKFIFANG 238 (257)
Q Consensus 223 --v~~~~~n~~~~~~~~~ 238 (257)
+...+.|++.+.++++
T Consensus 404 r~L~~~T~npA~alGi~~ 421 (569)
T PRK13308 404 RYIAKYTINPAITFGIDD 421 (569)
T ss_pred HHHHHHhHHHHHHcCCCC
Confidence 4555799999999875
No 113
>PLN02303 urease
Probab=96.25 E-value=0.13 Score=51.66 Aligned_cols=192 Identities=12% Similarity=0.031 Sum_probs=108.6
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCcee
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQIT 116 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~ 116 (257)
++.++...++.+..++...+...... .++++..+. ...+++||.... .+..++..+.++++.|+++|++++
T Consensus 444 ~e~I~~~L~aa~~~pvn~Gf~gkG~~-s~l~eL~el-------ieaGa~GfK~h~-d~gvTpelL~raLe~AkelGVpVa 514 (837)
T PLN02303 444 PSHMKLMLQSTDDLPLNFGFTGKGNT-AKPEGLHEI-------IKAGAMGLKLHE-DWGTTPAAIDNCLDVAEEYDIQVT 514 (837)
T ss_pred HHHHHHHHHhcccCCCcEEEEccCcc-cCHHHHHHH-------HHcCcEEEEECC-CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 56677777777777777665432221 233333222 123677877653 345678899999999999999999
Q ss_pred eecCCCCCH-hhHHHHHh-cCCcEEeeccc---c----cHHHHHHHhcCCCcE-EecccccceeccccC-----------
Q 025169 117 LHCGEIPNK-EEIQSMLD-FLPQRIGHACC---F----EEEEWRKLKSSKIPV-EICLTSNIRTETISS----------- 175 (257)
Q Consensus 117 ~Ha~E~~~~-~~i~~~l~-lg~~ri~Hg~~---l----~~~~~~~l~~~~i~v-~~cP~SN~~l~~~~~----------- 175 (257)
+| .|+.+. ..+.+.++ .|... .|-++ + -|+.++.....+|.- +.+||--+-...+..
T Consensus 515 IH-AEdLnE~G~vE~t~~a~G~Rp-Ih~~h~~Ga~gghapdi~~~~~~~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l 592 (837)
T PLN02303 515 IH-TDTLNESGCVEHSIAAFKGRT-IHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHL 592 (837)
T ss_pred Ee-cCcccccchHHHHHHHHCCCh-HHHHHhcCCCCCCCcHHHHhcCCCCccCCCCCCCCCCccCchhhhcCeEEeecCC
Confidence 99 566322 11333333 22211 11111 1 356677766666432 334443222111110
Q ss_pred ---------CCccc-----H---HHHHhcCCCEEecCCCCCCCC-----CChHHHHHHHHHh-C----------CCCHHH
Q 025169 176 ---------LDIHH-----F---VDLYKAQHPLVLCTDDSGVFS-----TSVSREYDLAASA-F----------SLGRRE 222 (257)
Q Consensus 176 ---------~~~~p-----i---~~l~~~Gv~v~lgTD~~~~~~-----~~l~~E~~~a~~~-~----------~ls~~~ 222 (257)
+.... + --|.+.|+-..++||+.++.. ..+++|-..+... . +++.++
T Consensus 593 ~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge~i~r~~q~A~k~~~~~g~l~~~~~~~dn~rv~~ 672 (837)
T PLN02303 593 DKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVITRTWQTAHKMKSQRGALEPRGADNDNFRIKR 672 (837)
T ss_pred CCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCcccceeeehHHHHHHHHHhcCCCCCccccccccCHHH
Confidence 00001 1 236789999999999986653 3555665555333 1 234466
Q ss_pred HHHH-HHHHHHHcCCChH
Q 025169 223 MFQL-AKSAVKFIFANGR 239 (257)
Q Consensus 223 v~~~-~~n~~~~~~~~~~ 239 (257)
.++. +.|++.++++++.
T Consensus 673 aL~~~TiN~A~AlG~~~~ 690 (837)
T PLN02303 673 YIAKYTINPAIAHGMSHF 690 (837)
T ss_pred HHHHHhHHHHHHCCcccC
Confidence 6554 8999999998763
No 114
>PRK09061 D-glutamate deacylase; Validated
Probab=96.17 E-value=0.58 Score=44.96 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecc--CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCC------HhhHHHHHh----
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN------KEEIQSMLD---- 133 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~--g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~------~~~i~~~l~---- 133 (257)
+++..+..++..+.-+.|..|+... +.+ ..+.+++.++++.|+++|.++.+|+.+... ...+.++++
T Consensus 165 ~~el~~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 165 PAELAEILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 4555455444433333456776642 222 347788999999999999999999976431 123344443
Q ss_pred cCC-cEEeeccccc----H---HHHHHHhcCCCcE--Eecccc
Q 025169 134 FLP-QRIGHACCFE----E---EEWRKLKSSKIPV--EICLTS 166 (257)
Q Consensus 134 lg~-~ri~Hg~~l~----~---~~~~~l~~~~i~v--~~cP~S 166 (257)
.|. -.|.|...+. + +.++..++.|+.+ +.||..
T Consensus 244 ~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 354 3577776532 2 4567777888777 678876
No 115
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=96.11 E-value=0.13 Score=45.03 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCC-CC--CCCh-hc---HHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCC
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGN-PT--KGEW-TT---FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLP 136 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~-~~--~~~~-~~---~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~ 136 (257)
+++++.+.++...+...+ ++.++..+. +. ..++ ++ +.++++.+++. ++|+.+|. ..++.+..+++.|+
T Consensus 21 ~~~~~~~~a~~~~~~GA~-iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al~~G~ 96 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGAD-IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAALEAGA 96 (257)
T ss_pred CHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHHcCC
Confidence 456655554444333332 544432221 21 1233 24 77778888887 99999997 46778888999999
Q ss_pred cEEeecccc-cHHHHHHHhcCCCcEEecccc
Q 025169 137 QRIGHACCF-EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 137 ~ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~S 166 (257)
+.|-|.... +++.++++++.|++++.++..
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCC
Confidence 999998776 778899999999999998764
No 116
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.57 Score=40.94 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=86.0
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-cC--CcEEeecccccHHHHHHHhcCCCcEEecccccceeccccC
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 175 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-lg--~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~ 175 (257)
+.|++-+++|++.++|+.+|+-+. .+.+.+.+. .+ ..-+-||+.=+.+..+.+.+.|..+.+.+..+++-+.
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A--~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~--- 186 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDA--HEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAE--- 186 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccc--HHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcH---
Confidence 457788899999999999999653 345555554 34 3568999998999999999999999988887665421
Q ss_pred CCcccHHHHHhcCC---CEEecCCCCCCCC----------CChHHHHHHHHHhCCCCHHHHHHHH-HHHHH
Q 025169 176 LDIHHFVDLYKAQH---PLVLCTDDSGVFS----------TSVSREYDLAASAFSLGRREMFQLA-KSAVK 232 (257)
Q Consensus 176 ~~~~pi~~l~~~Gv---~v~lgTD~~~~~~----------~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~ 232 (257)
.+.+..+ .+ .+-+=||.|=+.. ..+..-...+++.-|++.+++.+.+ .|+.+
T Consensus 187 ----~~~ev~~-~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~~ 252 (256)
T COG0084 187 ----KLREVAR-ELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKR 252 (256)
T ss_pred ----HHHHHHH-hCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1222221 12 3668899874421 1333445666666799999999986 56544
No 117
>PRK07945 hypothetical protein; Provisional
Probab=95.80 E-value=0.51 Score=42.87 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=54.3
Q ss_pred CCcEEeecccc---------------cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC
Q 025169 135 LPQRIGHACCF---------------EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 135 g~~ri~Hg~~l---------------~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
..+.++|.-.. -++.++.++++|+.++++-... ... | ...-++.+.+.|+++++|||.=.
T Consensus 221 ~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~-r~~--P--~~~il~~a~e~G~~vtigSDAH~ 295 (335)
T PRK07945 221 HTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPE-RRD--P--PTRLLRLALDAGCLFSIDTDAHA 295 (335)
T ss_pred CCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCC-CCC--C--hHHHHHHHHHcCCeEEecCCCCC
Confidence 35899996310 1466899999999999985332 111 1 12235777889999999999643
Q ss_pred CCC-CChHHHHHHHHHhCCCCHHHHHHH
Q 025169 200 VFS-TSVSREYDLAASAFSLGRREMFQL 226 (257)
Q Consensus 200 ~~~-~~l~~E~~~a~~~~~ls~~~v~~~ 226 (257)
... ..+.. -...++..|+++++|+..
T Consensus 296 p~~v~~~~~-~~~~a~~~g~~~~~i~n~ 322 (335)
T PRK07945 296 PGQLDWLGY-GCERAEEAGVPADRIVNT 322 (335)
T ss_pred hhhcchHHH-HHHHHHHcCCCHHHcccC
Confidence 333 23333 333334478888877654
No 118
>PLN02795 allantoinase
Probab=95.62 E-value=0.69 Score=44.40 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCC---------------------H-----hhHHHHHh----c-------CCcE
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPN---------------------K-----EEIQSMLD----F-------LPQR 138 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~---------------------~-----~~i~~~l~----l-------g~~r 138 (257)
.+.+.+.++++.|+++|+++++|+....- | ..+...+. . |+.
T Consensus 209 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~- 287 (505)
T PLN02795 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAH- 287 (505)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCC-
Confidence 46688999999999999999999854320 0 01111221 2 222
Q ss_pred Eeecccc-cH-H---HHHHHhcCC--CcEEecccc------cc-----eeccccCCCcc----cHHHHHhcCCCEEecCC
Q 025169 139 IGHACCF-EE-E---EWRKLKSSK--IPVEICLTS------NI-----RTETISSLDIH----HFVDLYKAQHPLVLCTD 196 (257)
Q Consensus 139 i~Hg~~l-~~-~---~~~~l~~~~--i~v~~cP~S------N~-----~l~~~~~~~~~----pi~~l~~~Gv~v~lgTD 196 (257)
.|-+++ +. + .++..+++| |.+++||-- .. ..+.-|+++.. -+.+.+..|.-=+||||
T Consensus 288 -lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sD 366 (505)
T PLN02795 288 -VHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSD 366 (505)
T ss_pred -EEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecC
Confidence 244444 33 3 345556677 666888831 10 11111222211 14556677888899999
Q ss_pred CCCCCCC-------Ch-------------HHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 197 DSGVFST-------SV-------------SREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 197 ~~~~~~~-------~l-------------~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
-...... ++ +--+.......+++..+++++ +.|.++..+++
T Consensus 367 Hap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 367 HSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSERPAKLAGLD 428 (505)
T ss_pred CCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 7654210 11 111111112357999999987 58999999984
No 119
>PRK07328 histidinol-phosphatase; Provisional
Probab=95.53 E-value=0.24 Score=43.41 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCcEEeeccccc--------------HHHHHHHhcCCCcEEecccccceeccccCCC-cccHHHHHhcCCCEEecCCC
Q 025169 135 LPQRIGHACCFE--------------EEEWRKLKSSKIPVEICLTSNIRTETISSLD-IHHFVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 135 g~~ri~Hg~~l~--------------~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~-~~pi~~l~~~Gv~v~lgTD~ 197 (257)
..+.++|--.+. ++.++.++++|+.+|++-.+-.+ +.-..+. ..-+..+.+.|+++++|||.
T Consensus 154 ~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~-~~~~~yp~~~il~~~~~~g~~itigSDA 230 (269)
T PRK07328 154 LFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRK-PVGEIYPSPALLRACRERGIPVVLGSDA 230 (269)
T ss_pred CCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcC-CCCCCCCCHHHHHHHHHcCCCEEEeCCC
Confidence 458899974321 35678899999999998743222 2100011 11256677889999999995
No 120
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=95.46 E-value=0.34 Score=41.63 Aligned_cols=176 Identities=11% Similarity=0.110 Sum_probs=96.5
Q ss_pred hhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCC-CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 39 NMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRD-LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~-~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
.+++.++.+.+.|+...-+-.-.... +. .....+ ...+ .-..|+-+. ..+++.+....+...+.-=-+.+
T Consensus 17 ~~~e~i~~A~~~Gl~~i~itdH~~~~-~~-~~~~~~---~~~~i~Il~GiEi~----~~~~~~~~~~~~~~~~~~d~v~v 87 (237)
T PRK00912 17 TVLRLISEASHLGYSGIALSNHSDKY-PE-SKPELE---DLLGFEIFRGVEIV----ASNPSKLRGLVGKFRKKVDVLAV 87 (237)
T ss_pred hHHHHHHHHHHCCCCEEEEecCcccc-cc-hhHHHH---HhcCCcEEeeEEEe----cCCHHHHHHHHHhccCcccEEEE
Confidence 45566677777888866553222211 11 111111 1111 123454442 22345555555543331113457
Q ss_pred ecCCCCCHhhHHHHHh-cCCcEEeeccc------ccHHHHHHHhcCCCcEEecccccceecc-ccCCCccc----HHHHH
Q 025169 118 HCGEIPNKEEIQSMLD-FLPQRIGHACC------FEEEEWRKLKSSKIPVEICLTSNIRTET-ISSLDIHH----FVDLY 185 (257)
Q Consensus 118 Ha~E~~~~~~i~~~l~-lg~~ri~Hg~~------l~~~~~~~l~~~~i~v~~cP~SN~~l~~-~~~~~~~p----i~~l~ 185 (257)
|-+. ....+.+++ .+++.|+|-.. +.+..++..+++|+.++++-.+-..-.. .......| ++...
T Consensus 88 ~~~~---~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~ 164 (237)
T PRK00912 88 HGGD---EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALAR 164 (237)
T ss_pred eCCC---HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHH
Confidence 7321 222245665 46799999643 3567889999999999988654221100 00000112 34455
Q ss_pred hcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH
Q 025169 186 KAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL 226 (257)
Q Consensus 186 ~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~ 226 (257)
+.|+|+++|||.-......-+++...+++.+|++.++++..
T Consensus 165 ~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~~~~~ 205 (237)
T PRK00912 165 KYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDEALKA 205 (237)
T ss_pred hcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67999999999755555434566666667799999999885
No 121
>PRK05588 histidinol-phosphatase; Provisional
Probab=95.41 E-value=0.21 Score=43.38 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC-EEecCCCCCCCC-CChHHHHHHHHHhCCCC
Q 025169 147 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDDSGVFS-TSVSREYDLAASAFSLG 219 (257)
Q Consensus 147 ~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~-v~lgTD~~~~~~-~~l~~E~~~a~~~~~ls 219 (257)
++.++.++++|+.+|++-.+ +...........+++.+.+.|++ +++|||.=.... ..-+++....++..|++
T Consensus 169 ~~il~~~~~~g~~lEINt~~-l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 169 DEILKVLIEKEKVLEINTRR-LDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHHHcCCEEEEECcc-cCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 35578899999999998744 21111000012247888999999 799999532222 11245554444545554
No 122
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.38 E-value=0.69 Score=41.05 Aligned_cols=188 Identities=11% Similarity=0.007 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH-HHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~-~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+-++.+......+ ...+.+... ...|++..+||.+|..=..+.+.+..++++|-+.+ -=|
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~Dg 105 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSY-AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDG 105 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCC
Confidence 467777888888877777566654332222 233445444 45678889999999976666788889999887654 112
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccc----ccee--ccccCCCccc--HHHHHhc-CC---CEEecCCCCCC--
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTS----NIRT--ETISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV-- 200 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~l--~~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~-- 200 (257)
-.+ +.+.+++....|+.||-=... +-.. ..-....+.| ..+|.+. || -|++||==...
T Consensus 106 S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK09195 106 SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKG 185 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCC
Confidence 222 345677778888888643221 1000 0000011223 4556553 66 47777752221
Q ss_pred ---CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 201 ---FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 201 ---~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.+.+++++++..... .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..+
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 223566666655432 36788888888888887777788888777777666554
No 123
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.26 E-value=1.2 Score=39.61 Aligned_cols=188 Identities=7% Similarity=-0.017 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHH-HHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~-~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+.++.+......+ ...+.+.. +...|++..+||.+|.-=..+.+.+..+++.|-+.+ -=|
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~Dg 105 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKY-AGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDG 105 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeC
Confidence 456777788878777776566654332222 23344554 455678889999999976656678889998887653 123
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccc----cce--eccccCCCccc--HHHHHhc-CC---CEEecCCCCC---
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTS----NIR--TETISSLDIHH--FVDLYKA-QH---PLVLCTDDSG--- 199 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~--l~~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~--- 199 (257)
-.+ +.+.+++....|+.||-=... +-. ...-...-+.| ..++.+. |+ -|++||==..
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12857 106 SKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKG 185 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCC
Confidence 333 234567777889888643221 100 00000111223 4555543 66 4777774211
Q ss_pred --CCCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 200 --VFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 200 --~~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
-.+.++++|++..... .|++.+++.++..+|+.=.-+..+.|..+.+.+.+..+
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 248 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLE 248 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 1234666777655432 36888888888888888877888888888877777654
No 124
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.22 E-value=1.6 Score=38.56 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHH-HHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~-~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+.++.+......+ .+.+.+...+ ..|++..+||.+|.--..+.+.+..++++|-+.+ -=|
T Consensus 22 n~e~~~avi~AAe~~~sPvIi~~~~~~~~~-~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~ 100 (276)
T cd00947 22 NLETLKAILEAAEETRSPVILQISEGAIKY-AGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDG 100 (276)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCC
Confidence 456677788878777776565554322222 2345555554 4567779999999976666788889999887654 112
Q ss_pred ccc--------cHHHHHHHhcCCCcEEeccccccee--c--cccCCCccc--HHHHHhc-CC---CEEecCCCCCC----
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTSNIRT--E--TISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV---- 200 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~SN~~l--~--~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~---- 200 (257)
-.+ +.+.+++....|+.||-....=-.. + .-...-+.| ..++.+. |+ -|++||==...
T Consensus 101 S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~ 180 (276)
T cd00947 101 SHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGE 180 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCC
Confidence 223 2356778888899997654321000 0 000112234 5666664 65 46777752211
Q ss_pred --CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 025169 201 --FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 254 (257)
Q Consensus 201 --~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~ 254 (257)
.+.+++.++...... .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..++
T Consensus 181 p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~ 243 (276)
T cd00947 181 PKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAE 243 (276)
T ss_pred CccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHh
Confidence 223556666665432 367888888888888877777777777777777666543
No 125
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.78 E-value=0.69 Score=40.31 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=66.8
Q ss_pred ccCCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHH
Q 025169 31 VRRPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF 107 (257)
Q Consensus 31 ~~~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~ 107 (257)
.-|.|.+++++. .++.+++.|+.+.+.....-+.+++...+.++.+.+...+.+.=.|..| ...|..+...+..
T Consensus 100 ~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~ 176 (259)
T cd07939 100 KLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG---ILDPFTTYELIRR 176 (259)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC---CCCHHHHHHHHHH
Confidence 345666776654 4466777898877554333235677777777777665443222222223 3467888888887
Q ss_pred HHH-cCCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 108 ARE-QGLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 108 A~~-~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
.++ .++++-+|+.-+.+- .+...+++.|++++
T Consensus 177 l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~v 211 (259)
T cd07939 177 LRAATDLPLEFHAHNDLGLATANTLAAVRAGATHV 211 (259)
T ss_pred HHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 665 468888888766553 34456777898765
No 126
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=94.72 E-value=1 Score=43.56 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=106.0
Q ss_pred hhhhHhhcccCCCcEEEEEE--EeeCC-C---CHHHHHHHHHHHHhhCCCceEEEecc-CCCC--CCChhcHHHHHHHHH
Q 025169 39 NMNDACNGTRGKKIYVRLLL--SIDRR-E---TTEAAMETVKLALEMRDLGVVGIDLS-GNPT--KGEWTTFLPALKFAR 109 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~--~~~r~-~---~~e~~~~~~~~~~~~~~~~vvg~~l~-g~~~--~~~~~~~~~~~~~A~ 109 (257)
.++-+.+.+++.++++.+.. |+.-. + +.+-..+.++....| +.++|++=. .-|. ... +..-...+.++
T Consensus 123 Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~--p~Vigl~E~Mn~pgVi~~D-~~~l~kl~a~~ 199 (584)
T COG1001 123 GIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH--PEVIGLGEMMNFPGVIEGD-PDMLAKLEAAR 199 (584)
T ss_pred HHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhC--CCccchhhhcCCchhccCC-HHHHHHHHHHH
Confidence 44445577888888887763 22221 1 111111222222222 336665411 1111 112 34555567799
Q ss_pred HcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcC-
Q 025169 110 EQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ- 188 (257)
Q Consensus 110 ~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G- 188 (257)
+.|.+|--|+.-..+ ..+...+..|+.. .|=..--+|-++.+. .|..+.+=-.|-.+ ++ ..-++.+-+.|
T Consensus 200 ~~~k~VdGHapgl~g-~~Ln~Y~aaGi~t-DHE~~t~EEa~~klr-~Gm~i~iReGS~a~-----dl-~~l~~~i~e~~~ 270 (584)
T COG1001 200 KAGKPVDGHAPGLSG-KELNAYIAAGIST-DHESTTAEEALEKLR-LGMKIMIREGSAAK-----DL-AALLPAITELGS 270 (584)
T ss_pred HcCCeecccCCCCCh-HHHHHHHhcCCCc-CcccCCHHHHHHHHh-CCcEEEEEcCchhh-----hH-HHHHHHHhhcCC
Confidence 999999999965433 2333444456654 676655566677764 67776543222111 00 01133444566
Q ss_pred CCEEecCCCCCCCC----CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCCh
Q 025169 189 HPLVLCTDDSGVFS----TSVSREYDLAASAFSLGRREMFQLA-KSAVKFIFANG 238 (257)
Q Consensus 189 v~v~lgTD~~~~~~----~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~~~~~ 238 (257)
=++.+||||..... ..|-.-.+.+. ..|+++-+.++|+ .|++++-++++
T Consensus 271 ~~~~lcTDD~~p~dl~~eGhld~~vR~Ai-~~Gv~p~~a~qmAtiN~A~~~gl~~ 324 (584)
T COG1001 271 RRVMLCTDDRHPDDLLEEGHLDRLVRRAI-EEGVDPLDAYQMATINPAEHYGLDD 324 (584)
T ss_pred ceEEEECCCCChhHhhhcCCHHHHHHHHH-HcCCCHHHHHHHHhcCHHHHcCCcc
Confidence 47999999976542 34444455554 4899999999995 89999998874
No 127
>PRK08609 hypothetical protein; Provisional
Probab=94.64 E-value=1.5 Score=42.83 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=101.9
Q ss_pred cceeeeeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEeeC------CCCHHHHHHHHHHHH----hhCC-CceE
Q 025169 17 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR------RETTEAAMETVKLAL----EMRD-LGVV 85 (257)
Q Consensus 17 v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r------~~~~e~~~~~~~~~~----~~~~-~~vv 85 (257)
|..-+++++=+.|+.-. +-..-++++++++.+.|++...+-.-.+ ..+++...+.++... +|.+ .-..
T Consensus 329 v~~~d~~~DlH~HT~~s-Dg~~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~ 407 (570)
T PRK08609 329 ITLSDIQGDLHMHTTWS-DGAFSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILS 407 (570)
T ss_pred hhhHhhcCCccccCCCC-CCCCCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34445666666666522 1111255566677777888765533221 123333333332222 2322 1134
Q ss_pred EEeccCCCCCCChhcHHHHHHHHHHcC-CceeeecCCCCCHhhH----HHHHhcC-CcEEeeccc--c--------c-HH
Q 025169 86 GIDLSGNPTKGEWTTFLPALKFAREQG-LQITLHCGEIPNKEEI----QSMLDFL-PQRIGHACC--F--------E-EE 148 (257)
Q Consensus 86 g~~l~g~~~~~~~~~~~~~~~~A~~~g-l~v~~Ha~E~~~~~~i----~~~l~lg-~~ri~Hg~~--l--------~-~~ 148 (257)
|+-+.-.+ ..+.+....++ ++.+ +-..+|..=..+...+ ..+++.+ .+.|+|-.. + + ++
T Consensus 408 GiEv~i~~-~g~~d~~~~~L---~~~D~vI~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~ 483 (570)
T PRK08609 408 GIEMDILP-DGSLDYDDEVL---AELDYVIAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQ 483 (570)
T ss_pred EEEEeecC-CcchhhcHHHH---HhhCEEEEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHH
Confidence 44333222 11122222222 2234 4566774322222222 2334333 478899651 1 1 45
Q ss_pred HHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH
Q 025169 149 EWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL 226 (257)
Q Consensus 149 ~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~ 226 (257)
.++.++++|+.++++-.+- ... ....-+..+.+.|++++||||.=......-+++-...++..++++++|+..
T Consensus 484 i~~~a~~~G~~lEINa~~~-r~~----~~~~~~~~~~e~Gv~i~igSDAH~~~~l~~~~~~v~~ar~~~~~~~~v~N~ 556 (570)
T PRK08609 484 LIELAKETNTALELNANPN-RLD----LSAEHLKKAQEAGVKLAINTDAHHTEMLDDMKYGVATARKGWIQKDRVINT 556 (570)
T ss_pred HHHHHHHhCCEEEEcCCcc-ccC----ccHHHHHHHHHcCCEEEEECCCCChhhhCcHHHHHHHHHHcCCCHHHcccC
Confidence 5677799999999986542 111 123457788999999999999643333222344444445578888887664
No 128
>PRK07627 dihydroorotase; Provisional
Probab=94.53 E-value=4.2 Score=38.14 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=85.9
Q ss_pred CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCC---------C-----------Hh-----hHHHHHhc--
Q 025169 82 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP---------N-----------KE-----EIQSMLDF-- 134 (257)
Q Consensus 82 ~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~---------~-----------~~-----~i~~~l~l-- 134 (257)
.|+++|-..+.+ ..+...+.++++.+++.|.++.+|+-... + +. .+..++.+
T Consensus 145 ~G~~~fk~~~~~-~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~ 223 (425)
T PRK07627 145 AGCVGFSQANVP-VVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMR 223 (425)
T ss_pred CCEEEEEcCCcc-cCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 357777643222 23456788899999999999999975321 0 00 12222322
Q ss_pred --CCcEEeecccc-cHHH---HHHHhcCC--CcEEeccccccee-----------ccccCCC----cccHHHHHhcCCCE
Q 025169 135 --LPQRIGHACCF-EEEE---WRKLKSSK--IPVEICLTSNIRT-----------ETISSLD----IHHFVDLYKAQHPL 191 (257)
Q Consensus 135 --g~~ri~Hg~~l-~~~~---~~~l~~~~--i~v~~cP~SN~~l-----------~~~~~~~----~~pi~~l~~~Gv~v 191 (257)
|+. .|-+++ +.+. ++..+++| |..++||-.=... +.-|+++ ...+.+.++.|.-.
T Consensus 224 ~~~~~--~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id 301 (425)
T PRK07627 224 VTGAR--VHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTID 301 (425)
T ss_pred HHCCc--EEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCc
Confidence 332 355555 3444 44455666 5558899731111 1112222 12367788899999
Q ss_pred EecCCCCCCC-------------CCChHHHH----HHHHHhCCCCHHHHHHH-HHHHHHHcCC
Q 025169 192 VLCTDDSGVF-------------STSVSREY----DLAASAFSLGRREMFQL-AKSAVKFIFA 236 (257)
Q Consensus 192 ~lgTD~~~~~-------------~~~l~~E~----~~a~~~~~ls~~~v~~~-~~n~~~~~~~ 236 (257)
+|+||-.... +.+-.+.+ .......+++.++++++ +.|+++..++
T Consensus 302 ~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~ 364 (425)
T PRK07627 302 AICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL 364 (425)
T ss_pred EEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999963211 11111111 11112357999999987 6899999887
No 129
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.52 E-value=1.1 Score=39.31 Aligned_cols=107 Identities=14% Similarity=0.009 Sum_probs=68.3
Q ss_pred ccccCCCchhhhhhHh---hcccCCCcEEEEEEE-eeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH
Q 025169 29 IDVRRPVNTKNMNDAC---NGTRGKKIYVRLLLS-IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA 104 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~---~a~~~~gir~~li~~-~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~ 104 (257)
....|.+.++.++.+. +.+++.|+++.+... ..| .+++...+.++.+.....+.+.=.|..| ..+|......
T Consensus 100 ~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~~ 175 (262)
T cd07948 100 EASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFR-SDLVDLLRVYRAVDKLGVNRVGIADTVG---IATPRQVYEL 175 (262)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEECCcCC---CCCHHHHHHH
Confidence 3345777778776543 556777888877664 444 5677777777766665444222223333 3467777777
Q ss_pred HHHHHH-cCCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 105 LKFARE-QGLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 105 ~~~A~~-~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+...++ .++++.+|+.-+.+- .+...+++.|++++
T Consensus 176 ~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 176 VRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 777655 478888998766553 34567777888765
No 130
>PRK02382 dihydroorotase; Provisional
Probab=94.44 E-value=0.59 Score=43.96 Aligned_cols=139 Identities=13% Similarity=0.034 Sum_probs=82.4
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCC---------------------H-----hhHHHHHh----cCCcEEeecccc-
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPN---------------------K-----EEIQSMLD----FLPQRIGHACCF- 145 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~---------------------~-----~~i~~~l~----lg~~ri~Hg~~l- 145 (257)
+...+.++++.+++.|+++.+|+....- + ..+..++. .|+ -.|-.++
T Consensus 159 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~--~~hi~h~s 236 (443)
T PRK02382 159 DEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGA--RIHIAHIS 236 (443)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCC--CEEEEECC
Confidence 4567889999999999999999753210 0 00112222 232 2455555
Q ss_pred cHHHHHHHhcCCCcEEecccccce-------ec----cccCCCcc----cHHHHHhcCCCEEecCCCCCCC---------
Q 025169 146 EEEEWRKLKSSKIPVEICLTSNIR-------TE----TISSLDIH----HFVDLYKAQHPLVLCTDDSGVF--------- 201 (257)
Q Consensus 146 ~~~~~~~l~~~~i~v~~cP~SN~~-------l~----~~~~~~~~----pi~~l~~~Gv~v~lgTD~~~~~--------- 201 (257)
+.+.++.+++.++..++||-.-.. ++ ..|+++.. -+.+.++.|+..+|+||-.+..
T Consensus 237 s~~~~~~i~~~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~~ 316 (443)
T PRK02382 237 TPEGVDAARREGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADIW 316 (443)
T ss_pred CHHHHHHHHHCCcEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCChh
Confidence 567788888777889999983211 11 11222211 1334466799999999954321
Q ss_pred ----CC-C---hHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 202 ----ST-S---VSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 202 ----~~-~---l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|. . ++-=+..++...+++.++++++ +.|+++..+++
T Consensus 317 ~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 317 DAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLD 361 (443)
T ss_pred hCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCC
Confidence 11 1 1111222223357999999887 58999999985
No 131
>PRK09059 dihydroorotase; Validated
Probab=94.34 E-value=3.9 Score=38.39 Aligned_cols=138 Identities=9% Similarity=-0.003 Sum_probs=73.8
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCC--------------------H-----hhHHHHHh----cCCcEEeeccccc-H
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPN--------------------K-----EEIQSMLD----FLPQRIGHACCFE-E 147 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~--------------------~-----~~i~~~l~----lg~~ri~Hg~~l~-~ 147 (257)
...+.++++.+++.|.++.+|+....- + ..+..++. .|+. .|-++++ .
T Consensus 165 ~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~--~hi~hvs~~ 242 (429)
T PRK09059 165 TQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGR--YHAAQISCA 242 (429)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCc--EEEEecCCH
Confidence 345778999999999999999743210 0 01122222 2332 4666663 3
Q ss_pred ---HHHHHHhcCCCc--EEecccccc-----------eeccccCCCc----ccHHHHHhcCCCEEecCCCCCCC------
Q 025169 148 ---EEWRKLKSSKIP--VEICLTSNI-----------RTETISSLDI----HHFVDLYKAQHPLVLCTDDSGVF------ 201 (257)
Q Consensus 148 ---~~~~~l~~~~i~--v~~cP~SN~-----------~l~~~~~~~~----~pi~~l~~~Gv~v~lgTD~~~~~------ 201 (257)
+.++..+++|+. .++||--=. ..+.-|+++. ..+.+.+..|.-=.++||.....
T Consensus 243 ~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~~ 322 (429)
T PRK09059 243 ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRL 322 (429)
T ss_pred HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCcC
Confidence 344555667744 478876210 1111122221 11234445566566889965431
Q ss_pred -------CC-C---hHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 202 -------ST-S---VSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 202 -------~~-~---l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|. . ++.-+..++...+++..++.++ +.|.++..+++
T Consensus 323 ~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 323 PFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLP 370 (429)
T ss_pred ChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 11 1 1122222222346899999996 68999999884
No 132
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=94.31 E-value=1.3 Score=39.60 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=67.2
Q ss_pred ceEEEeccCCCCCCCh---hcHHHHHHHHHHcCCceeeecCCCC-CHhhHHHHHhcCCc----EEeeccc-ccHH-HHHH
Q 025169 83 GVVGIDLSGNPTKGEW---TTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLPQ----RIGHACC-FEEE-EWRK 152 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~---~~~~~~~~~A~~~gl~v~~Ha~E~~-~~~~i~~~l~lg~~----ri~Hg~~-l~~~-~~~~ 152 (257)
|+++. ++.....+| ..|+.+.+..++-|.|+++|..... +.+.++-..+.|++ .|+|+-- .+|. -.+.
T Consensus 135 GiIk~--~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~ 212 (316)
T COG1735 135 GIIKE--AGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKK 212 (316)
T ss_pred ceeee--ccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHH
Confidence 45554 333344665 3366666667788999999985442 22222222234653 5899973 3443 3677
Q ss_pred HhcCCCcEEecccccceeccccC-CCcccHHHHHhcCC--CEEecCCC
Q 025169 153 LKSSKIPVEICLTSNIRTETISS-LDIHHFVDLYKAQH--PLVLCTDD 197 (257)
Q Consensus 153 l~~~~i~v~~cP~SN~~l~~~~~-~~~~pi~~l~~~Gv--~v~lgTD~ 197 (257)
|+.+|+.+++--..-. ...++ -..+|+.++.++|+ .|.||-|+
T Consensus 213 l~~~Ga~l~fD~iG~d--~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~ 258 (316)
T COG1735 213 LADRGAFLEFDRIGKD--KYYPDEDRIAPLLELVARGYADLILLSHDD 258 (316)
T ss_pred HHhcCceEEecccCcc--ccCcHHHhhhhHHHHHHhhHhhheecccch
Confidence 8888998876544211 11222 24789999999998 58888333
No 133
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=94.25 E-value=0.97 Score=39.57 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred cCCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH
Q 025169 32 RRPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 32 ~~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A 108 (257)
-|.+.++.++. .++.+++.|+++.+.....-..+++...+.++.+.++..+.+.=.|..| ..+|..+..+++..
T Consensus 105 ~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l 181 (268)
T cd07940 105 LKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVG---YLTPEEFGELIKKL 181 (268)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCCHHHHHHHHHHH
Confidence 35565666654 4456667788877554333235677777777777665443222222323 34778888888887
Q ss_pred HHc-C---CceeeecCCCCCH--hhHHHHHhcCCcEEee---------cccccHHHHHHHhcCC
Q 025169 109 REQ-G---LQITLHCGEIPNK--EEIQSMLDFLPQRIGH---------ACCFEEEEWRKLKSSK 157 (257)
Q Consensus 109 ~~~-g---l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~H---------g~~l~~~~~~~l~~~~ 157 (257)
++. + +++.+|+.-+.+- .+...+++.|++++.= |.-..++.+..|..+|
T Consensus 182 ~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 182 KENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred HHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 774 4 7888888766553 3455777789876521 1222456666666554
No 134
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.21 E-value=2.1 Score=37.97 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHH-HHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~-~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+.++.+......+ .+.+.+.. +...|++.++||.+|.-=..+.+.+..+++.|-+.+ -=|
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDg 105 (284)
T PRK12737 27 NLETLQVVVETAAELRSPVILAGTPGTFSY-AGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDG 105 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecC
Confidence 467777888888877776566554332222 23344555 455677889999999976656678889998887653 112
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccc----ccee--ccccCCCccc--HHHHHh-cCC---CEEecCCCCCC--
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTS----NIRT--ETISSLDIHH--FVDLYK-AQH---PLVLCTDDSGV-- 200 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~l--~~~~~~~~~p--i~~l~~-~Gv---~v~lgTD~~~~-- 200 (257)
-++ +.+.+++....|+.||-=... +-.. ..-...-+.| ..+|.+ -|| -|++||==...
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12737 106 SHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKG 185 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCC
Confidence 223 335677777888888642211 1000 0000111233 444554 465 46777742221
Q ss_pred ---CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 201 ---FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 201 ---~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.+.++++|++..... .|++.+++.++..+|+.=.-+..+.|..+.+.+.+..+
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFY 248 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 123456666655432 36788888888888887777777777777666666543
No 135
>PRK13404 dihydropyrimidinase; Provisional
Probab=94.21 E-value=0.71 Score=43.96 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=79.9
Q ss_pred hcHHHHHHHHHHcCCce-eeecCCCCCHhhHHHHHhcCCcEE----eecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 99 TTFLPALKFAREQGLQI-TLHCGEIPNKEEIQSMLDFLPQRI----GHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v-~~Ha~E~~~~~~i~~~l~lg~~ri----~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
....+++.+|++.|.++ .+|++-....+.++.+-..|.... -|-..++++++......|..+-++|..-- ..
T Consensus 221 ~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~--~~- 297 (477)
T PRK13404 221 EATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRD--KA- 297 (477)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCC--hH-
Confidence 34567788899999998 568852211223333333454332 35667787776443335666777774311 11
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCCCCC------------CCh--------HHHHHHHH------HhCCCCHHHHHHH-
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSGVFS------------TSV--------SREYDLAA------SAFSLGRREMFQL- 226 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~------------~~l--------~~E~~~a~------~~~~ls~~~v~~~- 226 (257)
....+.+.+..|.--+|+||-.+..- .++ .-|+.+.. ...+++.++++++
T Consensus 298 ---d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~ 374 (477)
T PRK13404 298 ---NQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALT 374 (477)
T ss_pred ---HHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23457788889999999999544320 011 11222222 2236999999997
Q ss_pred HHHHHHHcCCC
Q 025169 227 AKSAVKFIFAN 237 (257)
Q Consensus 227 ~~n~~~~~~~~ 237 (257)
+.|+++..++.
T Consensus 375 t~~pA~~lgl~ 385 (477)
T PRK13404 375 STNPAKLYGLY 385 (477)
T ss_pred HHHHHHHhCCC
Confidence 58999999984
No 136
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.19 E-value=1.3 Score=37.53 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=64.5
Q ss_pred CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEee--cccccHHHHHHHhcCCCcEEecccccc
Q 025169 91 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH--ACCFEEEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~H--g~~l~~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
|..+-.||..-.++.+.|+++|+++..=+ ..+.++..+.++|++.+.= +-.+.++.++.++..--.+-+||+...
T Consensus 88 GA~FivsP~~~~~v~~~~~~~~i~~iPG~---~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI 164 (213)
T PRK06552 88 GAQFIVSPSFNRETAKICNLYQIPYLPGC---MTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGV 164 (213)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEECCc---CCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCC
Confidence 33444567677788899999999987755 3577888888899987652 112346667777643222556666433
Q ss_pred eeccccCCCcccHHHHHhcC-CCEEecCC
Q 025169 169 RTETISSLDIHHFVDLYKAQ-HPLVLCTD 196 (257)
Q Consensus 169 ~l~~~~~~~~~pi~~l~~~G-v~v~lgTD 196 (257)
....+.++++.| .-+++|+.
T Consensus 165 --------~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 165 --------NLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred --------CHHHHHHHHHCCCcEEEEchH
Confidence 335689999999 45777776
No 137
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=94.10 E-value=4.3 Score=36.59 Aligned_cols=140 Identities=12% Similarity=0.056 Sum_probs=77.6
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCH--------hhHHHHHhc---CCcEEeecccc-cHHHHHHHhcC--CCcEEec
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNK--------EEIQSMLDF---LPQRIGHACCF-EEEEWRKLKSS--KIPVEIC 163 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--------~~i~~~l~l---g~~ri~Hg~~l-~~~~~~~l~~~--~i~v~~c 163 (257)
...+.++++.+++.|+++.+|++...-. ..+...+.+ -++.=.|..++ +.+.++++++. +|..++|
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~~vt~Et~ 191 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNENVAATIT 191 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCCCcEEEEc
Confidence 3678999999999999999998643210 111122221 12211344444 45667777644 5888999
Q ss_pred ccccceecc-c------cCCC-ccc---------HHHHHhcCCCE-EecCCCCCC-----------CCCChHH----HHH
Q 025169 164 LTSNIRTET-I------SSLD-IHH---------FVDLYKAQHPL-VLCTDDSGV-----------FSTSVSR----EYD 210 (257)
Q Consensus 164 P~SN~~l~~-~------~~~~-~~p---------i~~l~~~Gv~v-~lgTD~~~~-----------~~~~l~~----E~~ 210 (257)
|--=..... + +.+. .+| +-+.++.|.-= .|+||-... .|..-.+ -+.
T Consensus 192 ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~l~~~~ 271 (335)
T cd01294 192 PHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLA 271 (335)
T ss_pred hhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHHHHHHHHH
Confidence 853111000 0 0001 223 33444556544 699996332 1311111 121
Q ss_pred HHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 211 LAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 211 ~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
...+ -+++.+++.++ +.|.++..++.+
T Consensus 272 ~~~~-~~l~l~~~v~~~s~nPA~i~gl~~ 299 (335)
T cd01294 272 EVFE-EHNALDKLEAFASDNGPNFYGLPP 299 (335)
T ss_pred HHHh-ccCCHHHHHHHHHhHHHHHhCCCC
Confidence 2223 37999999997 699999998855
No 138
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.10 E-value=3.1 Score=36.87 Aligned_cols=188 Identities=10% Similarity=-0.000 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH-HHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~-~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+-++.+......+ .+.+.+... ...|++..+||.+|.-=..+.+.+..+++.|-+.+ -=|
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKH-AGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 456677777877777776565543322222 233444444 44577789999999976656778888888887654 112
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccc----cce--eccccCCCccc--HHHHHh-cCC---CEEecCCCCCC--
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTS----NIR--TETISSLDIHH--FVDLYK-AQH---PLVLCTDDSGV-- 200 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~--l~~~~~~~~~p--i~~l~~-~Gv---~v~lgTD~~~~-- 200 (257)
-.+ +.+.+++....|++||-=... +-. ...-...-+.| ..++.+ -|| -|++||==...
T Consensus 104 S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~ 183 (282)
T TIGR01858 104 SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKK 183 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCC
Confidence 222 335567777788888643221 000 00000011223 344443 455 46666642111
Q ss_pred ---CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 201 ---FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 201 ---~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.+.+++++++..... .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..+
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFA 246 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 123555665544422 36777888777777777777777777777666666543
No 139
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=93.87 E-value=0.38 Score=43.19 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=100.2
Q ss_pred hcccCCCcEEEEEEEeeCC--CCH-------HHH-HHHHHHHHhh-CC----CceEEEeccCCCCCCCh---hcHHHHHH
Q 025169 45 NGTRGKKIYVRLLLSIDRR--ETT-------EAA-METVKLALEM-RD----LGVVGIDLSGNPTKGEW---TTFLPALK 106 (257)
Q Consensus 45 ~a~~~~gir~~li~~~~r~--~~~-------e~~-~~~~~~~~~~-~~----~~vvg~~l~g~~~~~~~---~~~~~~~~ 106 (257)
+..+++|+.+.-.-++... .+. ++. ...++....= .+ .|+++..... ...++ ..|+++.+
T Consensus 72 ~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~--~~it~~E~k~lrAaa~ 149 (308)
T PF02126_consen 72 EISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS--NPITPLEEKVLRAAAR 149 (308)
T ss_dssp HHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT--TBCEHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc--CCCCHHHHHHHHHHHH
Confidence 4567778887776666552 222 221 1122222110 11 1466664433 23343 44667777
Q ss_pred HHHHcCCceeeecCCCC-CHhhHHHHH-hcCC--c--EEeecccc-cHHHHHHHhcCCCcEEeccc--------ccceec
Q 025169 107 FAREQGLQITLHCGEIP-NKEEIQSML-DFLP--Q--RIGHACCF-EEEEWRKLKSSKIPVEICLT--------SNIRTE 171 (257)
Q Consensus 107 ~A~~~gl~v~~Ha~E~~-~~~~i~~~l-~lg~--~--ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~--------SN~~l~ 171 (257)
.+++-|+|+++|.+-.. ...++.+.+ +.|+ + .++|.=.. +.+-+..++++|+.+.+--. .|-..+
T Consensus 150 A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~ 229 (308)
T PF02126_consen 150 AHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVG 229 (308)
T ss_dssp HHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCT
T ss_pred HHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCC
Confidence 77888999999997553 222333333 4565 3 47887533 55678888999999887322 111111
Q ss_pred cccC-CCcccHHHHHhcCC--CEEecCCCCC---C--CC------CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHH
Q 025169 172 TISS-LDIHHFVDLYKAQH--PLVLCTDDSG---V--FS------TSVSREYDLAASAFSLGRREMFQLA-KSAVKF 233 (257)
Q Consensus 172 ~~~~-~~~~pi~~l~~~Gv--~v~lgTD~~~---~--~~------~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~ 233 (257)
..++ ....-+..|.++|. .|.||+|-.. + .+ .-+++.+.=..+..|+|.+++-+|. .|..+.
T Consensus 230 ~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~ 306 (308)
T PF02126_consen 230 YPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARI 306 (308)
T ss_dssp TS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHH
Confidence 1111 01224788999988 6999999432 1 11 1234555555566799999999986 677664
No 140
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.85 E-value=4.3 Score=35.96 Aligned_cols=188 Identities=11% Similarity=0.004 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCC-ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE----
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI---- 139 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~-~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri---- 139 (257)
..|..+..++.+.+-+.+.++.+.-.+..+.. ......-+...|+++++||.+|..=..+.+.+.++++.|-.++
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDg 106 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDG 106 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecC
Confidence 45677778888877777767776554444433 2233344566788999999999965545778888998776542
Q ss_pred eec-----ccccHHHHHHHhcCCCcEEecccccceeccccC---------CCccc--HHHHHhcC----CCEEecCCCCC
Q 025169 140 GHA-----CCFEEEEWRKLKSSKIPVEICLTSNIRTETISS---------LDIHH--FVDLYKAQ----HPLVLCTDDSG 199 (257)
Q Consensus 140 ~Hg-----~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~---------~~~~p--i~~l~~~G----v~v~lgTD~~~ 199 (257)
.|- +.++.+.+++.+..|++||.-... +|...+ .-..| ..++.+.+ +-++|||==..
T Consensus 107 S~~~~eENi~~tkevv~~ah~~gvsVEaElG~---~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~ 183 (286)
T COG0191 107 SHLPFEENIAITKEVVEFAHAYGVSVEAELGT---LGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGV 183 (286)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCcEEEEecc---ccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccC
Confidence 122 123567889999999999763221 111111 01123 34566664 46888886322
Q ss_pred CC------CCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc
Q 025169 200 VF------STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKL 255 (257)
Q Consensus 200 ~~------~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~~ 255 (257)
.- +.+.+.+.+..... .|.+.+|+.+....|+.=.-++.+.+..+...+.+.+++.
T Consensus 184 Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~ 252 (286)
T COG0191 184 YKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAEN 252 (286)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHHHHhC
Confidence 21 13455555555432 3788999999999899888899999988888888877664
No 141
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=93.72 E-value=4.8 Score=35.85 Aligned_cols=189 Identities=8% Similarity=-0.002 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHH-HHHHHc--CCceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~-~~A~~~--gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
+.+.++..++.+.+.+.+.++.+......+....+.+..++ ..|++. .+||.+|.-=..+.+.+..+++.|-+.+ -
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMi 106 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMI 106 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 46677778888877777656654433323212345555554 456777 8899999976666788889998887654 1
Q ss_pred ecccc--------cHHHHHHHhcCCCcEEecccc----cce--eccccCCCccc--HHHHHhc-CC---CEEecCCCCCC
Q 025169 141 HACCF--------EEEEWRKLKSSKIPVEICLTS----NIR--TETISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV 200 (257)
Q Consensus 141 Hg~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~--l~~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~ 200 (257)
=|-.+ +.+.+++....|+.||--... +-. ...-....+.| ..+|.+. |+ -|++||==...
T Consensus 107 DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y 186 (288)
T TIGR00167 107 DGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVY 186 (288)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcccccc
Confidence 12223 235567777889988764321 000 00000111223 4556654 66 46777642221
Q ss_pred ------CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 201 ------FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 201 ------~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.+.++++|++..... .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..+
T Consensus 187 ~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 252 (288)
T TIGR00167 187 KGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYA 252 (288)
T ss_pred CCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHH
Confidence 234566666555432 36788888888888877777777777777777666543
No 142
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=93.67 E-value=0.3 Score=41.86 Aligned_cols=167 Identities=20% Similarity=0.162 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccCCCC---CCChhcHHHHHHHHHHcCCceeeecCCCCC---------HhhHHHHHh
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLSGNPT---KGEWTTFLPALKFAREQGLQITLHCGEIPN---------KEEIQSMLD 133 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~g~~~---~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~---------~~~i~~~l~ 133 (257)
++.+.+.++.+.. ..+++|+.+..... ..++....++++.|.++|++|.+|++-... +..+...+.
T Consensus 83 ~~~~~~~l~~~~~--~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~ 160 (273)
T PF04909_consen 83 PEDAVEELERALQ--ELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLE 160 (273)
T ss_dssp HHHHHHHHHHHHH--TTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH
T ss_pred chhHHHHHHHhcc--ccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHH
Confidence 4544444443332 34566766543222 223333459999999999999999761110 111112222
Q ss_pred cCCc---EEeecccc---cHHHHHHHhcC-CCcEEecccccceeccccCCCcccHHHHHhc-CC-CEEecCCCCCCCCCC
Q 025169 134 FLPQ---RIGHACCF---EEEEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKA-QH-PLVLCTDDSGVFSTS 204 (257)
Q Consensus 134 lg~~---ri~Hg~~l---~~~~~~~l~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~-Gv-~v~lgTD~~~~~~~~ 204 (257)
--++ .+.|+-.. -.+.++++.+. ++.+-.+-................+..+++. |. +|-.|||-|......
T Consensus 161 ~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P~~~~~~ 240 (273)
T PF04909_consen 161 RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYPHPDGAS 240 (273)
T ss_dssp HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TTSSTHHH
T ss_pred HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCCCCCccc
Confidence 2332 35787655 34556665543 3433221100000000000012235555543 44 799999988654322
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHH-HHHHHHc
Q 025169 205 VSREYDLAASAFSLGRREMFQLA-KSAVKFI 234 (257)
Q Consensus 205 l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~ 234 (257)
-............++.++..++. .|+.+..
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~i~~~NA~rl~ 271 (273)
T PF04909_consen 241 PYEYIWEAYFLDDLSEEEREKILYDNARRLY 271 (273)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHhHhHHHHc
Confidence 22222222221226888877774 6776653
No 143
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.61 E-value=4.5 Score=36.00 Aligned_cols=187 Identities=9% Similarity=-0.013 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH-HHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~-~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.++..++.+.+.+.+-++.+.-....+ .+.+.+..+ ...|++.++||.+|..=..+.+.+..+++.|-+.+ -=|
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 105 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILAGTPGTFKH-IALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDG 105 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecC
Confidence 466677777877777776555543222122 233444433 45577789999999876656677888888776553 112
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccc----cce--eccccCCCccc--HHHHHhc-CC---CEEecCCCCCC--
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTS----NIR--TETISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV-- 200 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~S----N~~--l~~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~-- 200 (257)
-.+ +.+.+++....|+.||-=... +-. ...-..+-+.| ..++.+. || -|++||==...
T Consensus 106 S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~ 185 (286)
T PRK12738 106 SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSK 185 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCC
Confidence 222 334566666778877642211 000 00000011223 3445543 55 35666542111
Q ss_pred ---CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025169 201 ---FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAE 252 (257)
Q Consensus 201 ---~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~ 252 (257)
.+.++.+|++..... .|++.+++.++...|+.=.-+..+.+..+.+.+.+..
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~ 247 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWF 247 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHH
Confidence 112445555444321 2566677766666666666666666666666555544
No 144
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.59 E-value=2 Score=38.22 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=63.4
Q ss_pred cCCCchhhhh---hHhhcccCCCcEEEEEEEe--eC----CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHH
Q 025169 32 RRPVNTKNMN---DACNGTRGKKIYVRLLLSI--DR----RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFL 102 (257)
Q Consensus 32 ~~~~~~~~~~---~~~~a~~~~gir~~li~~~--~r----~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~ 102 (257)
-|.+.+++++ ++++.+++.|+.+...++. .- ..+++...+.++.+.+...+ .+.++-.-...+|..+.
T Consensus 111 ~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d---~i~l~DT~G~~~P~~v~ 187 (287)
T PRK05692 111 INCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY---EISLGDTIGVGTPGQVR 187 (287)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc---EEEeccccCccCHHHHH
Confidence 3566667554 4557777888877654432 21 23566667777666655433 23232111133677788
Q ss_pred HHHHHHHHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 103 PALKFAREQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 103 ~~~~~A~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
++++..++. + +++.+|+..+.+- .+...+++.|++.+
T Consensus 188 ~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 188 AVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 888777654 3 7888888766553 34567777898775
No 145
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.58 E-value=2.2 Score=36.75 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=75.8
Q ss_pred CCchhhhhh---HhhcccCCCcEEEEEEE-eeC-CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH
Q 025169 34 PVNTKNMND---ACNGTRGKKIYVRLLLS-IDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 34 ~~~~~~~~~---~~~a~~~~gir~~li~~-~~r-~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A 108 (257)
.+.++.++. .++.+++.|+.+.+..+ +.| ..+++...+.++.+.++..+.+.=.|..| ..+|+.+.++++..
T Consensus 108 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~li~~l 184 (265)
T cd03174 108 KSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG---LATPEEVAELVKAL 184 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC---CcCHHHHHHHHHHH
Confidence 444444443 44667788999988874 555 15778888888887776554332223333 35778888888876
Q ss_pred HHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEEeec---------ccccHHHHHHHhcCC
Q 025169 109 REQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRIGHA---------CCFEEEEWRKLKSSK 157 (257)
Q Consensus 109 ~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~Hg---------~~l~~~~~~~l~~~~ 157 (257)
++. + +++.+|+..+.+- .+...|+..|++++.=+ .-..++.+..|...+
T Consensus 185 ~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 185 REALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred HHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 664 3 8888998766553 34567777898775211 112455566676665
No 146
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.54 E-value=1.5 Score=38.84 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCCchhhhhh---HhhcccCCCcEEEEEEEeeC---CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH
Q 025169 33 RPVNTKNMND---ACNGTRGKKIYVRLLLSIDR---RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK 106 (257)
Q Consensus 33 ~~~~~~~~~~---~~~a~~~~gir~~li~~~~r---~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~ 106 (257)
|.+.+++++. +++.+++.|+++.+.+...- +.+++...+.++.+.+...+.+.=.|..| ..+|..+.++++
T Consensus 107 ~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~l~~ 183 (280)
T cd07945 107 RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLG---ILSPFETYTYIS 183 (280)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCC---CCCHHHHHHHHH
Confidence 4677777654 44666777888777655211 24677777777776665443222222323 346777888887
Q ss_pred HHHHc--CCceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 107 FAREQ--GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 107 ~A~~~--gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
..++. ++++.+|+.-+.+- .+...+++.|++.+.
T Consensus 184 ~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd 221 (280)
T cd07945 184 DMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLH 221 (280)
T ss_pred HHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence 77664 58888998766553 345677778887653
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.40 E-value=2.1 Score=37.31 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=60.7
Q ss_pred hhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-CC-cee
Q 025169 39 NMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL-QIT 116 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-gl-~v~ 116 (257)
.+.++++.+++.|+.+.+..+..-..+++...+.++.+.+...+.+.=.|..| ..+|..+.++++..++. +. ++.
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~ 189 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDPTPVG 189 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCCceEE
Confidence 34456667777788776665433335777777777766655444221122223 34678888888887664 54 888
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEE
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+|+.-+.+- .+...+++.|++.+
T Consensus 190 ~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 190 FHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred EEecCCcchHHHHHHHHHHhCCCEE
Confidence 888755543 34456777888765
No 148
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.21 E-value=1.4 Score=40.71 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=73.5
Q ss_pred cceeeeeccC---ccccccCCCchhhhhhH---hhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc
Q 025169 17 VSAVDVDFAS---RSIDVRRPVNTKNMNDA---CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS 90 (257)
Q Consensus 17 v~y~E~r~~p---~~~~~~~~~~~~~~~~~---~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~ 90 (257)
+..+.+.++. +....-|.|.+++++.+ ++.+++.|+.+.+...-.-+.+++...+.++.+.+...+.+.=.|..
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~ 168 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV 168 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 4444444441 22233467777777654 45677789887776432222567888888887776654433222333
Q ss_pred CCCCCCChhcHHHHHHHHHHc-CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 91 GNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
| ..+|..+.++++..++. ++++.+|+.-+.+- .+...+++.|++.+
T Consensus 169 G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 169 G---ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred C---CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 3 34677888888776654 88999999766543 34456777888765
No 149
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.16 E-value=3.6 Score=36.21 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=64.1
Q ss_pred cCCCchhhhhh---HhhcccCCCcEEEEEEE--eeC----CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHH
Q 025169 32 RRPVNTKNMND---ACNGTRGKKIYVRLLLS--IDR----RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFL 102 (257)
Q Consensus 32 ~~~~~~~~~~~---~~~a~~~~gir~~li~~--~~r----~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~ 102 (257)
-|.+.++.++. .++.+++.|+.+...++ +.- ..+++...+.++.+.+...+.+.=-|..| ..+|..+.
T Consensus 105 ~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~ 181 (274)
T cd07938 105 INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIG---VATPAQVR 181 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---ccCHHHHH
Confidence 34555665554 44677888887765444 221 23566667777766655443222222333 34677888
Q ss_pred HHHHHHHHc--CCceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 103 PALKFAREQ--GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 103 ~~~~~A~~~--gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
++++..++. ++++.+|+.-+.+- .+...+++.|++++.
T Consensus 182 ~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 182 RLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 888877665 58888998766543 345577778887653
No 150
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=93.14 E-value=6 Score=35.22 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=92.4
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHH-HHHHHHHHhhCCCceEEEeccCCCCC--CChhcHHHHHHHHHHcCCceeee
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAA-METVKLALEMRDLGVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~-~~~~~~~~~~~~~~vvg~~l~g~~~~--~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
++.+..++.+=|..-...+.- .+++.+ .+..+.+.+ -+++|+-+.+.-.. .+...+.++++.|.++|+||.+|
T Consensus 88 ~~a~~~~~~pdrf~~~~~v~p-~~~~~a~~E~er~v~~---~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ih 163 (293)
T COG2159 88 DLAALAAEYPDRFVGFARVDP-RDPEAAAEELERRVRE---LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIH 163 (293)
T ss_pred HHHHHHhhCCcceeeeeeeCC-CchHHHHHHHHHHHHh---cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEE
Confidence 344444555545444433332 233433 333333332 35788777542111 23345789999999999999999
Q ss_pred cCCCCCHh----------hHHHHHh-c-CC-cEEeecc--cc-cHHHHHHH-hcCCCcEEecccccceeccccCCCcc-c
Q 025169 119 CGEIPNKE----------EIQSMLD-F-LP-QRIGHAC--CF-EEEEWRKL-KSSKIPVEICLTSNIRTETISSLDIH-H 180 (257)
Q Consensus 119 a~E~~~~~----------~i~~~l~-l-g~-~ri~Hg~--~l-~~~~~~~l-~~~~i~v~~cP~SN~~l~~~~~~~~~-p 180 (257)
.|-+.... .+.++.. + .. -.++|+= +. -.+-+... +.-++.+..+- . ...... +
T Consensus 164 tG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~---~-----~~~~~~~~ 235 (293)
T COG2159 164 TGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSG---V-----RPKYFAPP 235 (293)
T ss_pred eCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeec---c-----ccccCChH
Confidence 98654321 2233332 3 12 3578873 22 22333332 22234433221 1 110111 2
Q ss_pred HHH-HHh-cCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCCh
Q 025169 181 FVD-LYK-AQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLA-KSAVKFIFANG 238 (257)
Q Consensus 181 i~~-l~~-~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~~~~~ 238 (257)
+-+ +.+ -.=+|-.|||-|..... ..+... ...+++.+...++. .||.+...++.
T Consensus 236 ~~~~~~~~~~dkilFGSD~P~~~~~---~~l~~~-~~l~l~~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 236 LLEFLKELGPDKILFGSDYPAIHPE---VWLAEL-DELGLSEEVKEKILGENAARLLGLDP 292 (293)
T ss_pred HHHHHHhcccCeEEecCCCCCcCHH---HHHHHH-HhcCCCHHHHHHHHHHhHHHHhCcCC
Confidence 333 444 22369999997754322 222222 23678887777775 78888776653
No 151
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.05 E-value=2.3 Score=37.47 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred hhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-CCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-gl~v~ 116 (257)
+...++.+++.|+.+...+++.. ..+++...+.++.+.+...+.+.=.|..| ..+|..+.++++..++. ++++.
T Consensus 120 ~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~ 196 (275)
T cd07937 120 LEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG---LLTPYAAYELVKALKKEVGLPIH 196 (275)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhCCCeEE
Confidence 34455566777877766554322 24566666676666665444222122223 34677777777776654 67888
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEE
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+|+..+.+- .+...+++.|++.+
T Consensus 197 ~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 197 LHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred EEecCCCChHHHHHHHHHHhCCCEE
Confidence 888766543 34456667787654
No 152
>PRK09060 dihydroorotase; Validated
Probab=92.89 E-value=8.2 Score=36.33 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=53.5
Q ss_pred ecccc-cHHHHHHHhcC--CCcEEecccc----------c--ceeccccCCCcc----cHHHHHhcCCCEEecCCCCCCC
Q 025169 141 HACCF-EEEEWRKLKSS--KIPVEICLTS----------N--IRTETISSLDIH----HFVDLYKAQHPLVLCTDDSGVF 201 (257)
Q Consensus 141 Hg~~l-~~~~~~~l~~~--~i~v~~cP~S----------N--~~l~~~~~~~~~----pi~~l~~~Gv~v~lgTD~~~~~ 201 (257)
|.+++ +.+.++.+++. .+..++||-. . ...+..|+++.. -+.+.++.|+.-++|||-....
T Consensus 231 hi~h~st~~~v~~i~~~~~~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~ 310 (444)
T PRK09060 231 HVLHVSTAEEIDFLADHKDVATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHT 310 (444)
T ss_pred EEEeCCCHHHHHHHHHhCCCeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCC
Confidence 33344 45666666543 4788899821 1 111111222211 1556677899888999954321
Q ss_pred -------------CCChHHH-HHHHH---HhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 202 -------------STSVSRE-YDLAA---SAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 202 -------------~~~l~~E-~~~a~---~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+..-.+. +-++. ..-.++..++.++ +.|+++..+++
T Consensus 311 ~~~k~~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 311 LEEKAKPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIA 364 (444)
T ss_pred HHHhcCCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCC
Confidence 1111111 11222 1124999999998 58999999984
No 153
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.66 E-value=6.8 Score=34.78 Aligned_cols=188 Identities=9% Similarity=0.045 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHH-HHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe-ec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-HA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~-~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~-Hg 142 (257)
..+.++..++.+.+.+.+-++.+......+ ...+.+.. +...|++.++||.+|.--....+.+..+++.|.+.+- =|
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~~~~~~~~-~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~Dg 105 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQIAPTNAQL-SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDG 105 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECcHhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeC
Confidence 456667777777777766555542221111 23344443 4556788899999999766566788889988886541 12
Q ss_pred ccc--------cHHHHHHHhcCCCcEEeccccc--ceeccc--cCCCccc--HHHHHh-cCC---CEEecCCCCCCC---
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTSN--IRTETI--SSLDIHH--FVDLYK-AQH---PLVLCTDDSGVF--- 201 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~~~--~~~~~~p--i~~l~~-~Gv---~v~lgTD~~~~~--- 201 (257)
-.+ +.+.+++....|++||.-+..= ..-+.. ....+.| ..++.+ -|+ .|++||=-...-
T Consensus 106 S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~ 185 (283)
T PRK07998 106 AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPR 185 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCC
Confidence 222 2345677778888885433210 000000 0001122 344543 344 456666422211
Q ss_pred -CCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 202 -STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 202 -~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+.+++++++..... .|++.+++.++...|+.=.-+..+.|..+.+.+.+..+
T Consensus 186 l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 186 IDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred cCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 12445555444321 25677777777777776666777777776666665543
No 154
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.61 E-value=2.4 Score=37.20 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=54.7
Q ss_pred HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-C--Cceeeec
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHC 119 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-g--l~v~~Ha 119 (257)
.++.+++.|+.+.+.+...-+.+++...+.++.+.+...+.+.=.|..| ..+|+.+.+.+...++. + +++.+|+
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4455566677766654433235677767777666655433222223333 34677777777776653 4 7888888
Q ss_pred CCCCCH--hhHHHHHhcCCcEE
Q 025169 120 GEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 120 ~E~~~~--~~i~~~l~lg~~ri 139 (257)
.-+.+- .+...+++.|++.+
T Consensus 191 Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 191 HNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred CCCccHHHHHHHHHHHcCCCEE
Confidence 765543 24456666777554
No 155
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.58 E-value=2.5 Score=38.67 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=54.4
Q ss_pred CCCchhhhh---hHhhcccCCCcEEEEEEEee------CCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHH
Q 025169 33 RPVNTKNMN---DACNGTRGKKIYVRLLLSID------RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP 103 (257)
Q Consensus 33 ~~~~~~~~~---~~~~a~~~~gir~~li~~~~------r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~ 103 (257)
|.+.+|+++ ++++.+++.|++++..++.. -+.+++...+.++.+.+...+.+.=-|..| ...|..+.+
T Consensus 154 ~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G---~a~P~~v~~ 230 (347)
T PLN02746 154 NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIG---VGTPGTVVP 230 (347)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcC---CcCHHHHHH
Confidence 456666665 34455666677665443321 113556555665555544333221112222 235666666
Q ss_pred HHHHHHHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 104 ALKFAREQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 104 ~~~~A~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
+++..++. + .++.+|+.-+.+- .+...+++.|++.+.
T Consensus 231 lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 231 MLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVD 271 (347)
T ss_pred HHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 66666543 4 3567777655442 344566667776643
No 156
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.51 E-value=1.8 Score=39.83 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred CCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHH
Q 025169 33 RPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR 109 (257)
Q Consensus 33 ~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~ 109 (257)
|.|.+++++. .++.+++.|+.+.+...-.-+.+++...+.++.+.++..+.+.=.|..| ..+|..+.++++..+
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~ 181 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALR 181 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHH
Confidence 5666777654 4455677788877654433235678888888877766544222223333 346788888887766
Q ss_pred Hc-CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 110 EQ-GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 110 ~~-gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+. ++++.+|+.-+.+- .+...+++.|++++
T Consensus 182 ~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 182 QAVDLPLEMHAHNDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred HhcCCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 54 78889998755543 34456777888765
No 157
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.49 E-value=1.7 Score=41.66 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=71.0
Q ss_pred hhhhhHhhcccCCCcEEEEEEE--eeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc---C
Q 025169 38 KNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---G 112 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~--~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~---g 112 (257)
+.++.+++++++.|..+...+| +.-..+++...+..+.+.+...+.+.=-|.+| ..+|....+++...++. +
T Consensus 124 ~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaG---ll~P~~~~~LV~~Lk~~~~~~ 200 (499)
T PRK12330 124 RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAA---LLKPQPAYDIVKGIKEACGED 200 (499)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcc---CCCHHHHHHHHHHHHHhCCCC
Confidence 4555666777778877644443 34444666666666655554443222223333 34677888888877765 6
Q ss_pred CceeeecCCCCCH--hhHHHHHhcCCcEEeeccc---------ccHHHHHHHhcCCC
Q 025169 113 LQITLHCGEIPNK--EEIQSMLDFLPQRIGHACC---------FEEEEWRKLKSSKI 158 (257)
Q Consensus 113 l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~Hg~~---------l~~~~~~~l~~~~i 158 (257)
+++.+|+.-+.+- .+...+++.|++.+.=++. ..++.+..|...|.
T Consensus 201 ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~ 257 (499)
T PRK12330 201 TRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGY 257 (499)
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCC
Confidence 9999999877653 3456788889887632221 13455666665543
No 158
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.17 E-value=3.5 Score=39.08 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=69.1
Q ss_pred hhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v~ 116 (257)
++.+++.+++.|+.+...+|... ..+++...+..+.+.+...+.+.=-|..| ..+|.....++...++ .++++.
T Consensus 125 ~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~lv~alk~~~~~pi~ 201 (448)
T PRK12331 125 LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG---ILTPYVAYELVKRIKEAVTVPLE 201 (448)
T ss_pred HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcCCeEE
Confidence 45566777788877665544443 34556666666655555444222223333 3467777777777665 489999
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEEeeccc---------ccHHHHHHHhcCCC
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRIGHACC---------FEEEEWRKLKSSKI 158 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri~Hg~~---------l~~~~~~~l~~~~i 158 (257)
+|+.-+.+- .+...|++.|++.+.=++. ..++.+..|...|+
T Consensus 202 ~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~ 254 (448)
T PRK12331 202 VHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGY 254 (448)
T ss_pred EEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCC
Confidence 999877653 3456788889877632221 13455666655544
No 159
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.15 E-value=1.1 Score=41.40 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=58.3
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v~ 116 (257)
++.++++.++.|..+...+|...+ +..+.-.+..+......-+.++==|++| ..+|...-+++...|+ .++++.
T Consensus 127 l~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaG---lltP~~ayelVk~iK~~~~~pv~ 203 (472)
T COG5016 127 LKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAG---LLTPYEAYELVKAIKKELPVPVE 203 (472)
T ss_pred HHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccc---cCChHHHHHHHHHHHHhcCCeeE
Confidence 335667778888777666665542 3333333333333333333343334555 2355555556665554 599999
Q ss_pred eecCCCCCHhhH--HHHHhcCCcEEeec
Q 025169 117 LHCGEIPNKEEI--QSMLDFLPQRIGHA 142 (257)
Q Consensus 117 ~Ha~E~~~~~~i--~~~l~lg~~ri~Hg 142 (257)
+|+.++.+-... ..+++.|+|.|.-+
T Consensus 204 lHtH~TsG~a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 204 LHTHATSGMAEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred EecccccchHHHHHHHHHHhCcchhhhh
Confidence 999998875432 36777898877544
No 160
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.02 E-value=2.4 Score=40.32 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=59.6
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-CC
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL 113 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-gl 113 (257)
.+.++..++++++.|..+.+.+|... ..+.+...+.++.+.+...+.+.=-|.+| ..+|....+++...++. ++
T Consensus 131 ~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG---~l~P~~v~~Lv~alk~~~~~ 207 (468)
T PRK12581 131 PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAG---ILTPKAAKELVSGIKAMTNL 207 (468)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCC---CcCHHHHHHHHHHHHhccCC
Confidence 34455566777777877655555443 12334444454444444333222223333 34677777777777664 69
Q ss_pred ceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 114 QITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 114 ~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
++.+|+.-+.+- .+...|++.|++.+.
T Consensus 208 pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 208 PLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred eEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 999999877653 345678888987763
No 161
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.98 E-value=2.6 Score=38.70 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=66.8
Q ss_pred CCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHH
Q 025169 33 RPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR 109 (257)
Q Consensus 33 ~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~ 109 (257)
|.+.+++++. .++.+++.|+.+.+.+.-.-+.+++...+.++.+.+...+.+.=.|..| ...|..+.++++..+
T Consensus 104 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 104 KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVG---VLTPQKMEELIKKLK 180 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHh
Confidence 5666666664 4456677898887765433235677777777777665444332223333 346778888888776
Q ss_pred Hc-CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 110 EQ-GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 110 ~~-gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+. ++++.+|+.-+.+- .+...+++.|++++
T Consensus 181 ~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 181 ENVKLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred cccCceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 53 68888898766543 34456777888765
No 162
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.74 E-value=1.4 Score=37.62 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=66.7
Q ss_pred cCCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH
Q 025169 32 RRPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 32 ~~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A 108 (257)
-|.|.++.++. +++.+++.|+.+.+.....-..+++...+.++.+.++..+.+.=.|..| ..+|..+..+++..
T Consensus 99 ~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 99 LNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVG---IMTPEDVAELVRAL 175 (237)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS----S-HHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccC---CcCHHHHHHHHHHH
Confidence 45666666654 4567788899986665332235788888888888777555333334444 34778888888877
Q ss_pred HHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 109 REQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 109 ~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
++. + +++.+|+.-+.+- .+...+++.|++++.
T Consensus 176 ~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id 211 (237)
T PF00682_consen 176 REALPDIPLGFHAHNDLGLAVANALAALEAGADRID 211 (237)
T ss_dssp HHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEE
T ss_pred HHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEE
Confidence 663 4 7777777655442 345577778998863
No 163
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=91.49 E-value=2.5 Score=35.42 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=60.1
Q ss_pred CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE--eeccccc-HHHHHHHhcCCCcEEeccccc
Q 025169 91 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFE-EEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri--~Hg~~l~-~~~~~~l~~~~i~v~~cP~SN 167 (257)
|..+..||..-.++.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-.+. +.-++-|+.-=-.+-+||+.-
T Consensus 80 GA~FivSP~~~~~v~~~~~~~~i~~iPG~---~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~ptGG 156 (196)
T PF01081_consen 80 GAQFIVSPGFDPEVIEYAREYGIPYIPGV---MTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLPFMPTGG 156 (196)
T ss_dssp T-SEEEESS--HHHHHHHHHHTSEEEEEE---SSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEEBSS
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcccCCc---CCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCeEEEcCC
Confidence 44444566666788899999999998877 35788899999998754 2333344 666777763222345566543
Q ss_pred ceeccccCCCcccHHHHHhcCC-CEEecCC
Q 025169 168 IRTETISSLDIHHFVDLYKAQH-PLVLCTD 196 (257)
Q Consensus 168 ~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD 196 (257)
. ....+.+|+++|. -+++||.
T Consensus 157 V--------~~~N~~~~l~ag~~~vg~Gs~ 178 (196)
T PF01081_consen 157 V--------NPDNLAEYLKAGAVAVGGGSW 178 (196)
T ss_dssp ----------TTTHHHHHTSTTBSEEEESG
T ss_pred C--------CHHHHHHHHhCCCEEEEECch
Confidence 2 2346999999994 5666665
No 164
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.37 E-value=6.5 Score=33.64 Aligned_cols=97 Identities=9% Similarity=-0.004 Sum_probs=60.9
Q ss_pred CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE--eecccccHHHHHHHhcCCCcEEecccccc
Q 025169 91 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFEEEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri--~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
|..+..||..-..+.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-.+.+.-++-|+.==-.+.+||+.-+
T Consensus 91 GA~FiVsP~~~~~v~~~~~~~~i~~iPG~---~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV 167 (222)
T PRK07114 91 GANFIVTPLFNPDIAKVCNRRKVPYSPGC---GSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGV 167 (222)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCC
Confidence 44444577677788899999999987755 45788899999998764 22223345555555422122345565432
Q ss_pred eeccccCCCcccHHHHHhcCCC-EEecCC
Q 025169 169 RTETISSLDIHHFVDLYKAQHP-LVLCTD 196 (257)
Q Consensus 169 ~l~~~~~~~~~pi~~l~~~Gv~-v~lgTD 196 (257)
.. ....+.+|++.|+. |++||+
T Consensus 168 ~~------~~~n~~~yl~aGa~avg~Gs~ 190 (222)
T PRK07114 168 EP------TEENLKKWFGAGVTCVGMGSK 190 (222)
T ss_pred Cc------chhcHHHHHhCCCEEEEEChh
Confidence 21 01469999999964 445665
No 165
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=91.36 E-value=4.9 Score=36.10 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=75.4
Q ss_pred hcHHHHHHHHHHcCCcee-eecCCCCCHhhHHHHHhc--CCcEEeecc---------cccHHHHHHHhcCCCcEEecccc
Q 025169 99 TTFLPALKFAREQGLQIT-LHCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~-~Ha~E~~~~~~i~~~l~l--g~~ri~Hg~---------~l~~~~~~~l~~~~i~v~~cP~S 166 (257)
+.=+++++...+.|+.+- .|++ ....++++++ .|-.+.|.. .++++.++.++++|-.+-+|..+
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~s----~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~ 229 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHLS----ERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYP 229 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCCC----HHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeH
Confidence 345788888888898775 4775 3456777764 455566653 36899999999999777777654
Q ss_pred cceec----cccCCCcccHHHHHh-cCC-CEEecCCCCCCCCC----ChHHHHH---HHHHhCCCCHHHHHHHH-HHHH
Q 025169 167 NIRTE----TISSLDIHHFVDLYK-AQH-PLVLCTDDSGVFST----SVSREYD---LAASAFSLGRREMFQLA-KSAV 231 (257)
Q Consensus 167 N~~l~----~~~~~~~~pi~~l~~-~Gv-~v~lgTD~~~~~~~----~l~~E~~---~a~~~~~ls~~~v~~~~-~n~~ 231 (257)
.+... .+.++- ..+..+.+ .|+ .|+||||-.+..+. .-...|. ......|+|.+++.++. .|..
T Consensus 230 ~fl~~~~~~~~~~~~-~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~~i~g~N~l 307 (309)
T cd01301 230 AFLSPGADATLDDVV-RHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLPNLTAELLERGYSEEEIEKIAGGNFL 307 (309)
T ss_pred HHhCCCCCCCHHHHH-HHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHHHHHHHHHHcCCCHHHHHHHHhhchh
Confidence 43211 011111 12333333 466 49999994332211 1122232 22233689999998875 5543
No 166
>PRK06801 hypothetical protein; Provisional
Probab=91.10 E-value=11 Score=33.60 Aligned_cols=184 Identities=8% Similarity=-0.034 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHH-HHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEee-c
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH-A 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~-~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~H-g 142 (257)
+.+.++..++.+.+.+.+-++.+......+ .+.+.+.. +...|++..+||.+|..-....+.+.++++.|.+.+-- |
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~ 105 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKY-ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG 105 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhc-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC
Confidence 466777777777777766555554332222 23344444 44557778999999987655567778888888765421 1
Q ss_pred cccc--------HHHHHHHhcCCCcEEecccccceecccc--------C--CCccc--HHHHH-hcCCC---EEecCCCC
Q 025169 143 CCFE--------EEEWRKLKSSKIPVEICLTSNIRTETIS--------S--LDIHH--FVDLY-KAQHP---LVLCTDDS 198 (257)
Q Consensus 143 ~~l~--------~~~~~~l~~~~i~v~~cP~SN~~l~~~~--------~--~~~~p--i~~l~-~~Gv~---v~lgTD~~ 198 (257)
-.++ .+..++....|+.|+.-... ++... + ..+.| ..++. +-|+- |++||=-.
T Consensus 106 S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~---vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg 182 (286)
T PRK06801 106 STLEYEENVRQTREVVKMCHAVGVSVEAELGA---VGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHG 182 (286)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc---ccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCC
Confidence 1222 23456666778777543322 11100 0 01111 34444 44553 33333211
Q ss_pred CC-----CCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025169 199 GV-----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAE 252 (257)
Q Consensus 199 ~~-----~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~ 252 (257)
.. .+.+..++++..... .|++.+++.++...|+.-.-+..+.+..+.+.+.+..
T Consensus 183 ~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~ 248 (286)
T PRK06801 183 KYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQRM 248 (286)
T ss_pred CCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHHHHHHH
Confidence 11 122344444333221 2477777777777776666666666666666665544
No 167
>PRK09248 putative hydrolase; Validated
Probab=91.07 E-value=1.3 Score=38.14 Aligned_cols=91 Identities=15% Similarity=-0.041 Sum_probs=54.8
Q ss_pred HHhc-CCcEEeecccc-----cHHHHHHHhcCCCcEEecccccce--eccccCCCcccHHHHHhcCCCEEecCCCCCCCC
Q 025169 131 MLDF-LPQRIGHACCF-----EEEEWRKLKSSKIPVEICLTSNIR--TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS 202 (257)
Q Consensus 131 ~l~l-g~~ri~Hg~~l-----~~~~~~~l~~~~i~v~~cP~SN~~--l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~ 202 (257)
+++. +.+.++|--.. .++.++.++++|+.++++-.+... .+.. .....-+..+.+.|+++++|||.=....
T Consensus 121 ~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~~lEvN~~~l~~~~~g~~-~~~~~~~~~~~~~g~~~~~gSDAH~~~~ 199 (246)
T PRK09248 121 AIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNVALEINNSSFGHSRKGSE-DNCRAIAALCKKAGVWVALGSDAHIAFD 199 (246)
T ss_pred HHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCCEEEEECCCCccCCCCCc-ChHHHHHHHHHHcCCeEEEeCCCCChhh
Confidence 4444 45788986421 355678899999999987655411 1110 0011235667789999999999533222
Q ss_pred CChHHHHHHHHHhCCCCHHH
Q 025169 203 TSVSREYDLAASAFSLGRRE 222 (257)
Q Consensus 203 ~~l~~E~~~a~~~~~ls~~~ 222 (257)
..-+.+....++.+|++...
T Consensus 200 vg~~~~~~~~~~~~g~~~~~ 219 (246)
T PRK09248 200 IGNFEEALKILDEVGFPEER 219 (246)
T ss_pred hccHHHHHHHHHHcCCCHHH
Confidence 11245655566667776654
No 168
>PRK08185 hypothetical protein; Provisional
Probab=91.06 E-value=11 Score=33.54 Aligned_cols=185 Identities=10% Similarity=-0.034 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eecc
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHAC 143 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg~ 143 (257)
+.+.++..++.+.+.+.+-++.+......+. +.+...-+...|++..+||.+|..=..+.+.+..+++.|.+.+ -=|-
T Consensus 22 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~-~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S 100 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAIIAIHPNELDFL-GDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGS 100 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcchhhhc-cHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC
Confidence 4677777888888777775666544322222 2333334456688889999999976666778889998887653 1233
Q ss_pred ccc--------HHHHHHHhcCCCcEEecccccceeccc--------c-CCCccc--HHHHHhc-CCC---EEecCCCCCC
Q 025169 144 CFE--------EEEWRKLKSSKIPVEICLTSNIRTETI--------S-SLDIHH--FVDLYKA-QHP---LVLCTDDSGV 200 (257)
Q Consensus 144 ~l~--------~~~~~~l~~~~i~v~~cP~SN~~l~~~--------~-~~~~~p--i~~l~~~-Gv~---v~lgTD~~~~ 200 (257)
.++ .+.+++....|++++.-... ++.. . ..-..| ..++.+. |+. +++||=.+..
T Consensus 101 ~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~---vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 101 LLPYEENVALTKEVVELAHKVGVSVEGELGT---IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEee---ccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 333 24456667889888653321 1110 0 001123 3667766 764 6666654332
Q ss_pred C-------CCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 201 F-------STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 201 ~-------~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
- +.++.++++..... .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..+
T Consensus 178 ~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 244 (283)
T PRK08185 178 PKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILS 244 (283)
T ss_pred CCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 1 12444454433321 36788888888888887777888888887777766554
No 169
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.04 E-value=3.7 Score=34.65 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=56.0
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE--eeccccc-HHHHHHHhcCCCcEEecccccceecc
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFE-EEEWRKLKSSKIPVEICLTSNIRTET 172 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri--~Hg~~l~-~~~~~~l~~~~i~v~~cP~SN~~l~~ 172 (257)
.+|..-.++.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-.+. +.-++-|+.==-.+.++|+.-.
T Consensus 85 vsP~~~~~v~~~~~~~~i~~iPG~---~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGGV---- 157 (204)
T TIGR01182 85 VSPGLTPELAKHAQDHGIPIIPGV---ATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGGI---- 157 (204)
T ss_pred ECCCCCHHHHHHHHHcCCcEECCC---CCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCCC----
Confidence 455556678889999999987744 35788889999998764 2222232 5555555421112334454322
Q ss_pred ccCCCcccHHHHHhcCCC-EEecCC
Q 025169 173 ISSLDIHHFVDLYKAQHP-LVLCTD 196 (257)
Q Consensus 173 ~~~~~~~pi~~l~~~Gv~-v~lgTD 196 (257)
....+.+|+++|.- +++||+
T Consensus 158 ----~~~N~~~~l~aGa~~vg~Gs~ 178 (204)
T TIGR01182 158 ----NLANVRDYLAAPNVACGGGSW 178 (204)
T ss_pred ----CHHHHHHHHhCCCEEEEEChh
Confidence 23468999999974 455555
No 170
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=2.1 Score=39.14 Aligned_cols=96 Identities=15% Similarity=0.239 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCce-EE---EeccCCCCCCChhcHHHHHHHHHHcCCcee------eecCCCCC-HhhHHHHHhcCCcEE
Q 025169 71 ETVKLALEMRDLGV-VG---IDLSGNPTKGEWTTFLPALKFAREQGLQIT------LHCGEIPN-KEEIQSMLDFLPQRI 139 (257)
Q Consensus 71 ~~~~~~~~~~~~~v-vg---~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~------~Ha~E~~~-~~~i~~~l~lg~~ri 139 (257)
+.++.+.++..+.| +| +.+-+....++.+++++..+.|+++|.++. +|.++... ...+..+.++|+|.+
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDav 96 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAV 96 (347)
T ss_pred HHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEE
Confidence 34444555544422 33 222232345788889999999999998544 45544322 234566667898876
Q ss_pred eecccccHHHHHHHhcCC--CcEEecccccce
Q 025169 140 GHACCFEEEEWRKLKSSK--IPVEICLTSNIR 169 (257)
Q Consensus 140 ~Hg~~l~~~~~~~l~~~~--i~v~~cP~SN~~ 169 (257)
. .-|+-.+.++++.+ +++...+..|..
T Consensus 97 i---v~Dpg~i~l~~e~~p~l~ih~S~q~~v~ 125 (347)
T COG0826 97 I---VADPGLIMLARERGPDLPIHVSTQANVT 125 (347)
T ss_pred E---EcCHHHHHHHHHhCCCCcEEEeeeEecC
Confidence 3 34777888888777 777766666553
No 171
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.88 E-value=3.3 Score=40.64 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=60.5
Q ss_pred hhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v~ 116 (257)
++..++++++.|..+...+|.+. -.+++...+.++...+...+.+.=-|.+| ..+|....+++...++ .+++++
T Consensus 125 ~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG---~l~P~~v~~lv~alk~~~~ipi~ 201 (596)
T PRK14042 125 LKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAG---LLTPTVTVELYAGLKQATGLPVH 201 (596)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccc---CCCHHHHHHHHHHHHhhcCCEEE
Confidence 33455677777877655544443 34566666666655554433222223444 3467777777777665 489999
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
+|+.-+.+- .+...|++.|++.+.
T Consensus 202 ~H~Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 202 LHSHSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred EEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence 999877654 344577888987763
No 172
>PRK15108 biotin synthase; Provisional
Probab=90.81 E-value=3.1 Score=37.98 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccC-CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g-~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
+++++.+..+.+.+..-..+ .++.++ .+...+.+.+.++++.+++.++.+.++.|... .+.+....+.|++++.|..
T Consensus 77 s~eEI~~~a~~~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLS-ESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCC-HHHHHHHHHcCCCEEeecc
Confidence 56666665554444332223 333333 23333457788889989988998888877553 5555555578999988854
Q ss_pred cccH----------------HHHHHHhcCCCc
Q 025169 144 CFEE----------------EEWRKLKSSKIP 159 (257)
Q Consensus 144 ~l~~----------------~~~~~l~~~~i~ 159 (257)
-.+| +.++.+++.|+.
T Consensus 155 eT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~ 186 (345)
T PRK15108 155 DTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186 (345)
T ss_pred ccChHhcCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 3332 346677777764
No 173
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=90.78 E-value=9.3 Score=36.72 Aligned_cols=108 Identities=13% Similarity=0.030 Sum_probs=64.0
Q ss_pred EEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHH
Q 025169 53 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 53 r~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~ 131 (257)
+.+++..+......+ ..++.+.++...|.--+|+.+....-.++.+.++++.+++. +.++.+-. ..++.+..+
T Consensus 151 ~~~v~aEI~~a~~l~---~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT---~~~~v~eaA 224 (499)
T TIGR00284 151 PLRVVAEIPPTVAED---GIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADT---PTLDELYEA 224 (499)
T ss_pred CeEEEEEEcCCcchH---HHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeC---CCHHHHHHH
Confidence 355555555432222 33444444433442223443322111234588888888876 88887765 467778889
Q ss_pred HhcCCcEEeecccc-cHHHHHHHhcCCCcEEecccc
Q 025169 132 LDFLPQRIGHACCF-EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 132 l~lg~~ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~S 166 (257)
++.|++-|--.... .++.++.+++.|+++++.|+.
T Consensus 225 L~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~ 260 (499)
T TIGR00284 225 LKAGASGVIMPDVENAVELASEKKLPEDAFVVVPGN 260 (499)
T ss_pred HHcCCCEEEECCccchhHHHHHHHHcCCeEEEEcCC
Confidence 98998876533222 245567788889999998864
No 174
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.74 E-value=4 Score=34.35 Aligned_cols=93 Identities=13% Similarity=0.014 Sum_probs=59.9
Q ss_pred CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE--eecccc-cHHHHHHHhcCCCcEEeccccc
Q 025169 91 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCF-EEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri--~Hg~~l-~~~~~~~l~~~~i~v~~cP~SN 167 (257)
|..+..||..-.++.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-.+ .+.-++-|+.==-.+-+||+.-
T Consensus 76 GA~FivSP~~~~~vi~~a~~~~i~~iPG~---~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~ptGG 152 (201)
T PRK06015 76 GSRFIVSPGTTQELLAAANDSDVPLLPGA---ATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPTGG 152 (201)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEEecCC
Confidence 33444566667788899999999987765 45788899999998764 233333 3555555542111233455532
Q ss_pred ceeccccCCCcccHHHHHhcCCCEEec
Q 025169 168 IRTETISSLDIHHFVDLYKAQHPLVLC 194 (257)
Q Consensus 168 ~~l~~~~~~~~~pi~~l~~~Gv~v~lg 194 (257)
+ ....+.+|+++|.-++.|
T Consensus 153 V--------~~~n~~~~l~ag~~~~~g 171 (201)
T PRK06015 153 I--------SLKNARDYLSLPNVVCVG 171 (201)
T ss_pred C--------CHHHHHHHHhCCCeEEEE
Confidence 2 334699999997667766
No 175
>PRK10027 cryptic adenine deaminase; Provisional
Probab=90.72 E-value=4.7 Score=39.52 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=83.4
Q ss_pred CceEEEeccCC-CC--CCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCC
Q 025169 82 LGVVGIDLSGN-PT--KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKI 158 (257)
Q Consensus 82 ~~vvg~~l~g~-~~--~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i 158 (257)
+.++|++=.-+ +. ...++.+.++.. + .|.++.-|+.-..+ ..+...+..|... .|-..--++-++.++ .|.
T Consensus 178 ~~v~glgEvMn~~~V~~~d~~~~~ki~~-~--~~~~idGH~p~l~g-~~L~ay~aaGi~s-DHE~~t~eea~eklr-~Gm 251 (588)
T PRK10027 178 PQVTGLAEMMDYPGVISGQNALLDKLDA-F--RHLTLDGHCPGLGG-KELNAYIAAGIEN-CHESYQLEEGRRKLQ-LGM 251 (588)
T ss_pred CCceeEEeccCccccccCCHHHHHHHHH-h--CCCceECCCCCCCh-HHHHHHHHcCCCC-CcccCCHHHHHHHHH-CCC
Confidence 44777652111 11 234556666653 3 78888889864433 3344444456544 565554455556654 677
Q ss_pred cEEecccccceeccccCCCcccHHHHH-hcC-CCEEecCCCCCCC----CCChHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 025169 159 PVEICLTSNIRTETISSLDIHHFVDLY-KAQ-HPLVLCTDDSGVF----STSVSREYDLAASAFSLGRREMFQLA-KSAV 231 (257)
Q Consensus 159 ~v~~cP~SN~~l~~~~~~~~~pi~~l~-~~G-v~v~lgTD~~~~~----~~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~ 231 (257)
.+.+=-.|-.+ ++ ..+..++ +.. =+++++|||.... ...+..-.+.+....|+++.+.++|+ .|.+
T Consensus 252 ~v~iRegS~~~-----nl--~~l~~~~~~~~~~~~~l~TDd~~~~~l~~~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA 324 (588)
T PRK10027 252 SLMIREGSAAR-----NL--NALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTA 324 (588)
T ss_pred EEEEeCCcccc-----CH--HHHHHHhhccCCCeEEEEcCCCChHHHHhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 76644333110 00 0111111 111 3689999986432 24566677777777899999999985 7999
Q ss_pred HHcCCCh
Q 025169 232 KFIFANG 238 (257)
Q Consensus 232 ~~~~~~~ 238 (257)
++.++++
T Consensus 325 ~~lgl~d 331 (588)
T PRK10027 325 RHFGLNH 331 (588)
T ss_pred HHcCCCC
Confidence 9999864
No 176
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=90.60 E-value=12 Score=33.30 Aligned_cols=189 Identities=9% Similarity=0.013 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH-HHHHcC--CceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG--LQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~-~A~~~g--l~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
+.+.++..++.+.+.+.+.++.+......+..+.+.+...++ .|++.. +||.+|..=..+.+.+..++++|-+.+ -
T Consensus 27 n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~ 106 (286)
T PRK08610 27 NLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMI 106 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 456677777777777776555544332222222344555544 455666 799999876656778888888887653 1
Q ss_pred ecccc--------cHHHHHHHhcCCCcEEecccccc--eec--cccCCCccc--HHHHHhc-CC---CEEecCCCCCCC-
Q 025169 141 HACCF--------EEEEWRKLKSSKIPVEICLTSNI--RTE--TISSLDIHH--FVDLYKA-QH---PLVLCTDDSGVF- 201 (257)
Q Consensus 141 Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN~--~l~--~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~~- 201 (257)
=|-++ +.+.+++....|++||-=...=- --+ .-...-+.| ..+|.+. || -|++||==...-
T Consensus 107 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~ 186 (286)
T PRK08610 107 DASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKG 186 (286)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCC
Confidence 13233 23456777778888864322100 000 000011233 4555554 66 466766532221
Q ss_pred ----CCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 202 ----STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 202 ----~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+.+++++++..... .|++.+++.++..+|+.=.-+..+.|..+.+.+.+..+
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 12445555444321 36777888777777777777777777777766666543
No 177
>PRK08417 dihydroorotase; Provisional
Probab=89.89 E-value=4.5 Score=37.29 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=78.4
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCC---------C-----------H-----hhHHHHHhc----CCcEEeecccc-
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIP---------N-----------K-----EEIQSMLDF----LPQRIGHACCF- 145 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~---------~-----------~-----~~i~~~l~l----g~~ri~Hg~~l- 145 (257)
.+...+.++++.|++.|+++.+|+-+.. + + ..+..++.+ |+. .|-+++
T Consensus 127 ~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~--lhi~hvS 204 (386)
T PRK08417 127 LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNK--VLFDTLA 204 (386)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCC--EEEEeCC
Confidence 4567899999999999999999984421 0 0 012222222 332 466666
Q ss_pred cHHHHHHH---hcCC--CcEEecccccceecc-ccC----CC-ccc---------HHHHHhcCCCEEecCCCCCCC----
Q 025169 146 EEEEWRKL---KSSK--IPVEICLTSNIRTET-ISS----LD-IHH---------FVDLYKAQHPLVLCTDDSGVF---- 201 (257)
Q Consensus 146 ~~~~~~~l---~~~~--i~v~~cP~SN~~l~~-~~~----~~-~~p---------i~~l~~~Gv~v~lgTD~~~~~---- 201 (257)
+.+-++++ +++| +..++||-.=..... +.+ +. .+| +.+.+..|.-=.|+||-....
T Consensus 205 ~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K 284 (386)
T PRK08417 205 LPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKK 284 (386)
T ss_pred CHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHc
Confidence 34545544 5566 555889853111100 000 11 223 344556787779999965431
Q ss_pred ---------CCChHHHH-HH----HHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 202 ---------STSVSREY-DL----AASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 202 ---------~~~l~~E~-~~----a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|..-.+.+ -+ +....+++..+++++ +.|+++..+++
T Consensus 285 ~~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 285 DLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLN 335 (386)
T ss_pred cCCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 11111221 11 122235899999997 47999999875
No 178
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.84 E-value=4.7 Score=39.50 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=62.1
Q ss_pred hhhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCce
Q 025169 39 NMNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQI 115 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v 115 (257)
.+...++.+++.|+.+...+|... ..+++...+.++.+.+...+.+.=-|..| ..+|....+++...++ .++++
T Consensus 119 n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G---~~~P~~v~~lv~~lk~~~~~pi 195 (582)
T TIGR01108 119 NLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAG---ILTPKAAYELVSALKKRFGLPV 195 (582)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CcCHHHHHHHHHHHHHhCCCce
Confidence 344556777788888776655443 23556666666666555444332223433 3467778777777665 47999
Q ss_pred eeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 116 TLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 116 ~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
++|+.-+.+- .+...+++.|++.+
T Consensus 196 ~~H~Hnt~Gla~An~laAveaGa~~v 221 (582)
T TIGR01108 196 HLHSHATTGMAEMALLKAIEAGADGI 221 (582)
T ss_pred EEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 9999877653 34567778888765
No 179
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=89.73 E-value=8.3 Score=33.19 Aligned_cols=99 Identities=13% Similarity=-0.024 Sum_probs=56.3
Q ss_pred cC-CceeeecC--CCCCHhhH----HHHHhc-CCcEEeeccc-------------ccHHHHHHHhcCCCcEEecccccce
Q 025169 111 QG-LQITLHCG--EIPNKEEI----QSMLDF-LPQRIGHACC-------------FEEEEWRKLKSSKIPVEICLTSNIR 169 (257)
Q Consensus 111 ~g-l~v~~Ha~--E~~~~~~i----~~~l~l-g~~ri~Hg~~-------------l~~~~~~~l~~~~i~v~~cP~SN~~ 169 (257)
.+ .-..+|-. +....... ..+..- .++.|+|-.. ...+.++.++++|+.++++-. +-.
T Consensus 93 lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aleins~-~~~ 171 (237)
T COG1387 93 LDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGKALEINSR-PGR 171 (237)
T ss_pred cCEEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCcEEeecCC-cCc
Confidence 44 45667763 33333222 233332 3488999754 235678999999999987543 111
Q ss_pred eccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHH
Q 025169 170 TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAAS 214 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~ 214 (257)
. +....-+....+.|+.++||||.=.... .++......+.+
T Consensus 172 ~----~~~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~~~~ 213 (237)
T COG1387 172 L----DPNSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKIARR 213 (237)
T ss_pred c----CchHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHHHHH
Confidence 1 1111225556778999999999644333 344444444433
No 180
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.69 E-value=5.6 Score=38.10 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=66.6
Q ss_pred cCCCchhhhhhHh---hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH
Q 025169 32 RRPVNTKNMNDAC---NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 32 ~~~~~~~~~~~~~---~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A 108 (257)
-+.|.+++++.+. +.+++.|+++.+...-.-+.+++...+.++.+.+...+.+.=.|..| ..+|..+..+++..
T Consensus 105 l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l 181 (488)
T PRK09389 105 LKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRL 181 (488)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHH
Confidence 3567777776554 45667788887765533335678788888777665544322223333 34677888887776
Q ss_pred HH-cCCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 109 RE-QGLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 109 ~~-~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
++ .++++-+|+.-..+- .+...+++.|++++
T Consensus 182 ~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 182 SELVKGPVSIHCHNDFGLAVANTLAALAAGADQV 215 (488)
T ss_pred HhhcCCeEEEEecCCccHHHHHHHHHHHcCCCEE
Confidence 55 478888888755442 34456777888764
No 181
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=89.67 E-value=8.9 Score=34.85 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred ceEEEeccCC--CC--C--C-ChhcHHHHHHHHHHcCCceeeecCCCCCH--------hhHH-HHHh--c-CCcEEeecc
Q 025169 83 GVVGIDLSGN--PT--K--G-EWTTFLPALKFAREQGLQITLHCGEIPNK--------EEIQ-SMLD--F-LPQRIGHAC 143 (257)
Q Consensus 83 ~vvg~~l~g~--~~--~--~-~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--------~~i~-~~l~--l-g~~ri~Hg~ 143 (257)
|+.||-+... .+ . . +...+.++++.+++.|+++.+|++...+. ..+. .... . -+..-.|..
T Consensus 92 Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~~~~~~~i~ 171 (341)
T TIGR00856 92 VVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLE 171 (341)
T ss_pred CeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHccCCeEEEE
Confidence 6888876421 11 1 1 22578999999999999999998654111 1111 1111 1 112224555
Q ss_pred cc-cHHHHHHHhcC--CCcEEeccccccee-----c----c----ccCCCcc----cHHHHHhcCCCE-EecCCCCCC--
Q 025169 144 CF-EEEEWRKLKSS--KIPVEICLTSNIRT-----E----T----ISSLDIH----HFVDLYKAQHPL-VLCTDDSGV-- 200 (257)
Q Consensus 144 ~l-~~~~~~~l~~~--~i~v~~cP~SN~~l-----~----~----~~~~~~~----pi~~l~~~Gv~v-~lgTD~~~~-- 200 (257)
++ +.+-++.+++. .+..++||--=... . . -|+++.. -+.+.+..|.-= .|+||-...
T Consensus 172 H~st~~~~~~i~~a~~~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~ 251 (341)
T TIGR00856 172 HITTKDAIDYVEDGNNRLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHAR 251 (341)
T ss_pred ecCcHHHHHHHHHcCCCEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCCh
Confidence 55 45666666532 37788998531110 0 1 1111110 133455667554 799995432
Q ss_pred ---------CCCChHHH-HHH---HHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 201 ---------FSTSVSRE-YDL---AASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 201 ---------~~~~l~~E-~~~---a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+|..-.+. +-. ..+ .+++.+.+.++ +.|.++..+++
T Consensus 252 ~~K~~~~~~~G~~g~e~~l~~~~~~~~-~~~~l~~~v~~~s~nPAk~~gl~ 301 (341)
T TIGR00856 252 HRKESSCGCAGCFSAPTALPSYAEVFE-EMNALENLEAFCSDNGPQFYGLP 301 (341)
T ss_pred hHcCCCCCCCCcccHHHHHHHHHHHHh-cCCCHHHHHHHHhHhHHHHhCCC
Confidence 12111111 111 222 26899999887 58999999884
No 182
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=89.66 E-value=14 Score=32.78 Aligned_cols=189 Identities=10% Similarity=0.020 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHH-HHHcC--CceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG--LQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~-A~~~g--l~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
+.+.++..++.+.+.+.+-++.+......+..+.+.+...++. |++.. +||.+|..=..+.+.+..++++|-+.+ -
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~ 106 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMI 106 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 4667777888787777775666543222221234455555443 45555 799999976656678888888887653 1
Q ss_pred ecccc--------cHHHHHHHhcCCCcEEeccccc--ceec--cccCCCccc--HHHHHh-cCC---CEEecCCCCCCC-
Q 025169 141 HACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTE--TISSLDIHH--FVDLYK-AQH---PLVLCTDDSGVF- 201 (257)
Q Consensus 141 Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~--~~~~~~~~p--i~~l~~-~Gv---~v~lgTD~~~~~- 201 (257)
=|-++ +.+.+++....|++||-=...= .--+ .-..+-+.| ..++.+ -|+ -|++||==...-
T Consensus 107 DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 186 (285)
T PRK07709 107 DASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKG 186 (285)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCC
Confidence 12222 3355677777888886432110 0000 000011233 445554 365 467776532221
Q ss_pred ----CCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 202 ----STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 202 ----~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+.++.++++..... .|++.+++.++..+|+.=.-+..+.|..+.+.+.+..+
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 12445555444321 36778888888888877777777777777777766553
No 183
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=89.52 E-value=1.4 Score=39.21 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHH-HHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFL-PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~-~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg 142 (257)
+.+.+...++.+.+.+.+-++.+......+. +.+.+. .+...|++.++||.+|.-=..+.+.+..+++.|-+.+ -=|
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~-~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~Dg 104 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQISPSEVKYM-GLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDG 104 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH-HHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcchhhhhhh-hHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccC
Confidence 4566777777777776665666543321111 234444 3455678889999999865556778888998887664 122
Q ss_pred ccc--------cHHHHHHHhcCCCcEEecccccce----ecc---ccCCCccc--HHHHH-hcCC---CEEecCCCC---
Q 025169 143 CCF--------EEEEWRKLKSSKIPVEICLTSNIR----TET---ISSLDIHH--FVDLY-KAQH---PLVLCTDDS--- 198 (257)
Q Consensus 143 ~~l--------~~~~~~~l~~~~i~v~~cP~SN~~----l~~---~~~~~~~p--i~~l~-~~Gv---~v~lgTD~~--- 198 (257)
-.+ +.+.+++....|+.||-....=.. ... ...+-+.| ..++. +-|| -|++||==.
T Consensus 105 S~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (287)
T PF01116_consen 105 SALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYK 184 (287)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBS
T ss_pred CcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccC
Confidence 223 335677888889998865432110 000 01122344 34554 3455 477776421
Q ss_pred ----CCCCCChHHHHHHHH-Hh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 025169 199 ----GVFSTSVSREYDLAA-SA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 254 (257)
Q Consensus 199 ----~~~~~~l~~E~~~a~-~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~ 254 (257)
...+.+++++++... .. .|++.+++.++..+|+.=.-+..+.+..+.+.+.+..++
T Consensus 185 ~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~ 252 (287)
T PF01116_consen 185 GGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLAE 252 (287)
T ss_dssp SSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHHh
Confidence 112246667777776 32 368888888888888777777778887777777666654
No 184
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=89.42 E-value=4.6 Score=36.99 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=37.2
Q ss_pred HHHHHhcCCCEEecCCC-CC------------CCCCChHHH----HHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 181 FVDLYKAQHPLVLCTDD-SG------------VFSTSVSRE----YDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 181 i~~l~~~Gv~v~lgTD~-~~------------~~~~~l~~E----~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+.+.++.|...++|||- |- .++..-.+. +.......+++..+++++ +.|.++..++++
T Consensus 233 L~~~l~~G~id~i~SDh~P~~~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 233 LLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKN 308 (361)
T ss_pred HHHHHhCCCCCEEeeCCCCCCHHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 44558899999999994 32 112111111 112223357999999987 689999998853
No 185
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.31 E-value=6.6 Score=37.84 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=75.4
Q ss_pred HHHHHHHhhccc--eeeeeccC-ccccc--cCCCchhhhhhHh---hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHh
Q 025169 7 MDAVVEGLRAVS--AVDVDFAS-RSIDV--RRPVNTKNMNDAC---NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALE 78 (257)
Q Consensus 7 ~~~~~~~~~~v~--y~E~r~~p-~~~~~--~~~~~~~~~~~~~---~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~ 78 (257)
++..++++.... .+.+.... ..|.. -|.|.+++++.+. +.+++.|.++.+...-.-+.+++...+.++.+.+
T Consensus 81 id~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~ 160 (513)
T PRK00915 81 IDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAID 160 (513)
T ss_pred HHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 555665555432 23333331 22322 2567788776544 5667788887655431212467888888887776
Q ss_pred hCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-C----CceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 79 MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G----LQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 79 ~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-g----l~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
...+.+.=.|..| ..+|..+..+++..++. . +++-+|+.-..+- .+...+++.|++++
T Consensus 161 ~Ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~V 225 (513)
T PRK00915 161 AGATTINIPDTVG---YTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQV 225 (513)
T ss_pred cCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEE
Confidence 6544222222223 34678888888777654 3 7888898765543 34456677788765
No 186
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=89.02 E-value=2.2 Score=38.54 Aligned_cols=129 Identities=10% Similarity=0.103 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHcCCceee-ecCCCCCHhhHHHHHhc--CCcEEeecc---------cccHHHHHHHhcCCCcEEeccccc
Q 025169 100 TFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~-Ha~E~~~~~~i~~~l~l--g~~ri~Hg~---------~l~~~~~~~l~~~~i~v~~cP~SN 167 (257)
.=+++++...+.|+.+-+ |++ ....+++++. .|-...|.. .++++.++.++++|=.+=+|..+.
T Consensus 161 ~G~~vV~~mn~lGm~vDvSH~s----~~t~~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~ 236 (320)
T PF01244_consen 161 FGREVVREMNRLGMLVDVSHLS----EKTFWDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPA 236 (320)
T ss_dssp HHHHHHHHHHHHT-EEE-TTB-----HHHHHHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHH
T ss_pred HHHHHHHHHHHcCCeeeeccCC----HHHHHHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchh
Confidence 346788888888987754 665 4456777774 334455652 458999999999995555554443
Q ss_pred ceec------cccCCCcccHHHHHh-cCC-CEEecCCCCCCC-------CCChHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 025169 168 IRTE------TISSLDIHHFVDLYK-AQH-PLVLCTDDSGVF-------STSVSREYDLAASAFSLGRREMFQLA-KSAV 231 (257)
Q Consensus 168 ~~l~------~~~~~~~~pi~~l~~-~Gv-~v~lgTD~~~~~-------~~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~ 231 (257)
+... ++.++-. .+..+.+ .|+ .|+||||-.+.. +.+-+-.+.......|+|.+++.++. .|..
T Consensus 237 fl~~~~~~~~~~~~~~~-Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~kI~g~N~l 315 (320)
T PF01244_consen 237 FLGDDWDPRASLDDLVD-HIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDIEKILGGNFL 315 (320)
T ss_dssp HHSTTHSSG-BHHHHHH-HHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHH
T ss_pred hhcccccccccHHHHHH-HHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHHHHHHhHhHH
Confidence 3111 1111111 1333333 355 599999932211 12222233333334699999999986 7776
Q ss_pred HH
Q 025169 232 KF 233 (257)
Q Consensus 232 ~~ 233 (257)
+.
T Consensus 316 Rv 317 (320)
T PF01244_consen 316 RV 317 (320)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 187
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=88.98 E-value=19 Score=33.30 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=112.4
Q ss_pred ccccccCCCchh-----hhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCC---CceEEEeccCCCCC---
Q 025169 27 RSIDVRRPVNTK-----NMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRD---LGVVGIDLSGNPTK--- 95 (257)
Q Consensus 27 ~~~~~~~~~~~~-----~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~---~~vvg~~l~g~~~~--- 95 (257)
+.|-..|....+ .++.++++..+.|....|--.+.. +.+...+.++...++.. ..+.|+.|-|+-.+
T Consensus 58 hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~--~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~k 135 (380)
T COG1820 58 HIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITA--SLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPEK 135 (380)
T ss_pred eecCcCcccccCccCHHHHHHHHHHhhhcCeeeeeeecccC--CHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHhh
Confidence 444445555443 467788899999988776655554 56666666655555432 35889888653111
Q ss_pred ---------C--ChhcHHHHHHHHHHcCCceeeecCCCCC-HhhHHHHHhcCC-cEEeecccccHHHHHHHhcCCCcEEe
Q 025169 96 ---------G--EWTTFLPALKFAREQGLQITLHCGEIPN-KEEIQSMLDFLP-QRIGHACCFEEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 96 ---------~--~~~~~~~~~~~A~~~gl~v~~Ha~E~~~-~~~i~~~l~lg~-~ri~Hg~~l~~~~~~~l~~~~i~v~~ 162 (257)
. +++++..+++.++. .++...=|.|..+ .+.++...+.|. -.+||-..-.++..+.+..--..++|
T Consensus 136 kGAh~~~~ir~~~~~~~~~~~~~a~g-~i~~vTlAPE~~~~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~Ga~~~TH 214 (380)
T COG1820 136 KGAHNPEYIRPPDPEELEQLIAAADG-LIKLVTLAPELDGTKELIRLLANAGIVVSIGHSNATYEQARAAFEAGATFVTH 214 (380)
T ss_pred ccCCCHHHhCCCCHHHHHHHHhhccC-ceEEEEECCCCCCCHHHHHHHHhCCeEEEecCccccHHHHHHHHHhCccEEEe
Confidence 1 23455555555543 4666666888863 344443334454 34566543333332322222233344
Q ss_pred cccc-------------------cceeccc-cCCCcccH--HHHHh-cC-CCEEecCCC---------------------
Q 025169 163 CLTS-------------------NIRTETI-SSLDIHHF--VDLYK-AQ-HPLVLCTDD--------------------- 197 (257)
Q Consensus 163 cP~S-------------------N~~l~~~-~~~~~~pi--~~l~~-~G-v~v~lgTD~--------------------- 197 (257)
+.-. +.+.+-+ +..-.||. +-.++ +| =++.|=||.
T Consensus 215 lfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~i~LVTDam~a~G~~dg~y~lgg~~V~v~ 294 (380)
T COG1820 215 LFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLPDGEYILGGQTVTVA 294 (380)
T ss_pred eccCCCCCCCCCCcccceeecCCCeEEEEEccCcccCHHHHHHHHhccCCceEEEEEccccccCCCCccEEECCEEEEEE
Confidence 3210 0000000 11223342 11111 11 135555552
Q ss_pred --------CCCCC--CChHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCCh
Q 025169 198 --------SGVFS--TSVSREYDLAASAFSLGRREMFQLA-KSAVKFIFANG 238 (257)
Q Consensus 198 --------~~~~~--~~l~~E~~~a~~~~~ls~~~v~~~~-~n~~~~~~~~~ 238 (257)
....+ .+|.+-++.+.+..+.+.+|.++|+ .|.+++.++++
T Consensus 295 ~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl~~ 346 (380)
T COG1820 295 DGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDD 346 (380)
T ss_pred CCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCCcC
Confidence 11222 4778888888888899999999996 89999999876
No 188
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=88.95 E-value=15 Score=32.22 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=97.9
Q ss_pred hcccCCCcEEEEEEEeeC---------CCCHHHH----HHHHHHHHhhCCCc-eEEEeccC-CCCCCCh-------hcHH
Q 025169 45 NGTRGKKIYVRLLLSIDR---------RETTEAA----METVKLALEMRDLG-VVGIDLSG-NPTKGEW-------TTFL 102 (257)
Q Consensus 45 ~a~~~~gir~~li~~~~r---------~~~~e~~----~~~~~~~~~~~~~~-vvg~~l~g-~~~~~~~-------~~~~ 102 (257)
.+.++.++++...+++.- ..+|+++ +..++++.++-.++ .+|++=.| +++..|. +.+.
T Consensus 69 ~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~ 148 (285)
T COG1831 69 KIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLE 148 (285)
T ss_pred HHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHH
Confidence 455667776655554431 2455554 44566677775554 78887666 4555554 4466
Q ss_pred HHHHHHHHcCCceeeecCCCCCHhhHH---HHH-hcCC--cE-EeecccccHHHHHHHhcCCCcEEecccccceeccccC
Q 025169 103 PALKFAREQGLQITLHCGEIPNKEEIQ---SML-DFLP--QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 175 (257)
Q Consensus 103 ~~~~~A~~~gl~v~~Ha~E~~~~~~i~---~~l-~lg~--~r-i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~ 175 (257)
.++++|++.|.++++|. |+.+..... ... +.|. .+ +=|=. .+.+ .--.+.||.-++ |.|
T Consensus 149 ~a~elA~dvdc~vqLHt-es~~~~~~~~i~~~ak~~G~~~~~VVkHha--~p~v-~~~~~~Gi~pSV-~as--------- 214 (285)
T COG1831 149 YAMELAKDVDCAVQLHT-ESLDEETYEEIAEMAKEAGIKPYRVVKHHA--PPLV-LKCEEVGIFPSV-PAS--------- 214 (285)
T ss_pred HHHHHhhcCCCcEEEec-CCCChHHHHHHHHHHHHhCCCcceeEeecC--Cccc-hhhhhcCcCCcc-ccc---------
Confidence 78899999999999996 454544332 222 2464 33 33321 2211 122335554221 211
Q ss_pred CCcccHHHHHhcCCCEEecCC---CCC----CCC-CChHHHHHHHHHhCCCCHHHHHHHHH
Q 025169 176 LDIHHFVDLYKAQHPLVLCTD---DSG----VFS-TSVSREYDLAASAFSLGRREMFQLAK 228 (257)
Q Consensus 176 ~~~~pi~~l~~~Gv~v~lgTD---~~~----~~~-~~l~~E~~~a~~~~~ls~~~v~~~~~ 228 (257)
.--+.+..+.|-...+=|| ||. ..+ -++.+-.+.......++.+.+.++..
T Consensus 215 --r~~v~~a~~~g~~FmmETDyIDDp~RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~ 273 (285)
T COG1831 215 --RKNVEDAAELGPRFMMETDYIDDPRRPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHV 273 (285)
T ss_pred --HHHHHHHHhcCCceEeecccccCcccCCCcCCccchhHHHHHHHHhcCCcHHHHHHHHH
Confidence 1247888899999999999 332 223 36665555555656788888888753
No 189
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=88.84 E-value=19 Score=33.23 Aligned_cols=36 Identities=0% Similarity=-0.051 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 203 TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 203 ~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+|.++++.+.+..++++.+++++ +.|+++..++++
T Consensus 314 ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~ 350 (380)
T TIGR00221 314 LTMIEGARNLVEFTNISLTDAARMSSLNPARALGIDD 350 (380)
T ss_pred hhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCCC
Confidence 588899999888778999999997 579999998864
No 190
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=88.50 E-value=7.4 Score=32.91 Aligned_cols=123 Identities=7% Similarity=0.006 Sum_probs=79.6
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeeccc------ccHHHHHHHhcCCCcEEeccccccee
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC------FEEEEWRKLKSSKIPVEICLTSNIRT 170 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~------l~~~~~~~l~~~~i~v~~cP~SN~~l 170 (257)
.|..++..+..- .+--+.+|.|. ..-.+.+++.++|.+.|-.. ++--+.++.++++|.+++|-..=+..
T Consensus 69 np~~l~~~V~k~--~~~vv~V~GGd---~~vNR~AvE~~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~ 143 (216)
T PRK03892 69 KPSLIREVKQRF--LNYLIYVQGGD---LRVNRYAIERGVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRA 143 (216)
T ss_pred CHHHHHHHHHhc--cceEEEEECCc---HHHHHHHHhcccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhh
Confidence 345566555443 24556667642 23335666668888877643 34456788889999999885432222
Q ss_pred ccccCCCccc-------HHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHH
Q 025169 171 ETISSLDIHH-------FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL 226 (257)
Q Consensus 171 ~~~~~~~~~p-------i~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~ 226 (257)
.... +..- +.--.+.++|+.|+|+....++.--.+|+..+...+||+..++...
T Consensus 144 ~G~~--Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~~~ 204 (216)
T PRK03892 144 NPYE--RANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAKAS 204 (216)
T ss_pred Cchh--HHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 1100 1111 1222368999999999888888666799999999999999998764
No 191
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.49 E-value=7 Score=33.15 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=77.7
Q ss_pred cCCCchhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc------------CCCCCCChh
Q 025169 32 RRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS------------GNPTKGEWT 99 (257)
Q Consensus 32 ~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~------------g~~~~~~~~ 99 (257)
++.+.++++ .++++..+.|+++.=+- .+. + .+.+.++...+..++-.+|.|.. |..+..+|.
T Consensus 22 r~~~~~~a~-~i~~al~~~Gi~~iEit--l~~--~-~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 22 VINKLEDAV-PLAKALVAGGLPVLEVT--LRT--P-AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred EcCCHHHHH-HHHHHHHHcCCCEEEEe--cCC--c-cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 344555555 34456666677753332 332 2 23333333332223446676642 333334555
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe--ecccc-cHHHHHHHhcCCCcEEecccccceeccccCC
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG--HACCF-EEEEWRKLKSSKIPVEICLTSNIRTETISSL 176 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~--Hg~~l-~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~ 176 (257)
.-.++.+.|+++++++..=+ ..+.++..+.++|++.+- .+-.+ .+..++.++.-=-.+.++|+.-+
T Consensus 96 ~~~~vi~~a~~~~i~~iPG~---~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~ptGGV-------- 164 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPGV---STPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFCPTGGI-------- 164 (212)
T ss_pred CCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEEEeCCC--------
Confidence 55577888888888876543 346678888889987642 11111 35555555432222344454322
Q ss_pred CcccHHHHHhcCCCEEec
Q 025169 177 DIHHFVDLYKAQHPLVLC 194 (257)
Q Consensus 177 ~~~pi~~l~~~Gv~v~lg 194 (257)
....+++++++|--++.|
T Consensus 165 ~~~ni~~~l~ag~v~~vg 182 (212)
T PRK05718 165 SPANYRDYLALPNVLCIG 182 (212)
T ss_pred CHHHHHHHHhCCCEEEEE
Confidence 234689999999333333
No 192
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.44 E-value=6.1 Score=37.64 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=66.3
Q ss_pred hhhHhhcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v~ 116 (257)
+...++.+++.|..+...+|... ..+++...+..+.+.+...+.+.=-|..| ..+|....+++...++ .++++.
T Consensus 124 ~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~Lv~~lk~~~~vpI~ 200 (467)
T PRK14041 124 LEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAG---LLTPKRAYELVKALKKKFGVPVE 200 (467)
T ss_pred HHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccC---CcCHHHHHHHHHHHHHhcCCceE
Confidence 44455666777877665554433 23445555555555544333222223333 3467777777777665 489999
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEEeeccc--------c-cHHHHHHHhcCCC
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRIGHACC--------F-EEEEWRKLKSSKI 158 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri~Hg~~--------l-~~~~~~~l~~~~i 158 (257)
+|+.-+.+- .+...|++.|++.+.=++. . .++.+..|...|.
T Consensus 201 ~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 201 VHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred EEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 999877653 3456778889877532221 1 3455666665543
No 193
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.41 E-value=6.5 Score=38.62 Aligned_cols=98 Identities=18% Similarity=0.064 Sum_probs=60.9
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-CCcee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQIT 116 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-gl~v~ 116 (257)
+...++.+++.|..+...+|.... .+++...+.++.+.+...+.+.=-|..| ...|....+++...++. +++++
T Consensus 125 ~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G---~~~P~~~~~lv~~lk~~~~~pi~ 201 (592)
T PRK09282 125 MEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAG---LLTPYAAYELVKALKEEVDLPVQ 201 (592)
T ss_pred HHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCC---CcCHHHHHHHHHHHHHhCCCeEE
Confidence 444556667778877765555442 3456666666655554433222223333 34677888888877664 79999
Q ss_pred eecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 117 LHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 117 ~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
+|+.-+.+- .+...|++.|++.+.
T Consensus 202 ~H~Hnt~Gla~An~laAv~aGad~vD 227 (592)
T PRK09282 202 LHSHCTSGLAPMTYLKAVEAGVDIID 227 (592)
T ss_pred EEEcCCCCcHHHHHHHHHHhCCCEEE
Confidence 999876653 345677888987753
No 194
>PRK07369 dihydroorotase; Provisional
Probab=88.33 E-value=22 Score=33.24 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=82.4
Q ss_pred ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCC---------C-----------H-----hhHHHHHhc---
Q 025169 83 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP---------N-----------K-----EEIQSMLDF--- 134 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~---------~-----------~-----~~i~~~l~l--- 134 (257)
|+++|- .+.. ..+...+.++++.+++.|.++.+|+.... + + ..+..++.+
T Consensus 148 Gv~~f~-~~~~-~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~ 225 (418)
T PRK07369 148 GVVGFT-DGQP-LENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAA 225 (418)
T ss_pred CCEEEE-CCCc-CCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466664 1111 12345788899999999999999984221 0 0 012222322
Q ss_pred -CCcEEeecccc-cHHHH---HHHhcCC--CcEEeccccccee-----------ccccCCCcc----cHHHHHhcCCCEE
Q 025169 135 -LPQRIGHACCF-EEEEW---RKLKSSK--IPVEICLTSNIRT-----------ETISSLDIH----HFVDLYKAQHPLV 192 (257)
Q Consensus 135 -g~~ri~Hg~~l-~~~~~---~~l~~~~--i~v~~cP~SN~~l-----------~~~~~~~~~----pi~~l~~~Gv~v~ 192 (257)
|+. .|-+++ +.+-+ +..+++| +..++||-.=... +.-|+++.. -+.+.++.|.-=.
T Consensus 226 ~~~~--~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~ 303 (418)
T PRK07369 226 IGTP--VHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDA 303 (418)
T ss_pred HCCc--EEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 332 344455 34444 4445565 5668888531111 111222210 1445567788889
Q ss_pred ecCCCCCCC-------------CC-----ChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 193 LCTDDSGVF-------------ST-----SVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 193 lgTD~~~~~-------------~~-----~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
|+||-.... |. .+..-+..+....+++..+++++ +.|.++...++
T Consensus 304 i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 304 IAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE 367 (418)
T ss_pred EEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC
Confidence 999965432 10 11111223333346999999887 58999999985
No 195
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=88.13 E-value=9.4 Score=33.51 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=62.7
Q ss_pred CCCchhhhhh---HhhcccCCCcEEEEEEE-eeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH
Q 025169 33 RPVNTKNMND---ACNGTRGKKIYVRLLLS-IDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK 106 (257)
Q Consensus 33 ~~~~~~~~~~---~~~a~~~~gir~~li~~-~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~ 106 (257)
|.+.++.++. .++.+++.|+.+.+... +.+ ..+++...+.++.+.....+.+.=.|..| ..+|..+...++
T Consensus 111 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~ 187 (273)
T cd07941 111 GTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVK 187 (273)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHH
Confidence 4555566554 44566777888766422 212 23566666776666555444332223333 346778888888
Q ss_pred HHHHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 107 FAREQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 107 ~A~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
..++. + +++.+|+.-+.+- .+...+++.|++++.
T Consensus 188 ~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id 225 (273)
T cd07941 188 EVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQ 225 (273)
T ss_pred HHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEE
Confidence 77653 4 7888888766543 344567778887753
No 196
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=88.11 E-value=6.4 Score=38.69 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=59.1
Q ss_pred hhhhhHhhcccCCCcEEEEEEEe--eCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH-cCCc
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSI--DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQ 114 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~--~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~ 114 (257)
+.+...++.+++.|..+...+|. .-..+.+...+.++.+.....+.+.=-|..| ...|....+++...++ .+++
T Consensus 124 ~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G---~l~P~~~~~lv~~lk~~~~~p 200 (593)
T PRK14040 124 RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAG---LLKPYAAYELVSRIKKRVDVP 200 (593)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCC---CcCHHHHHHHHHHHHHhcCCe
Confidence 34555667777788776544443 2223445555555555544433222223333 3467777777777665 4899
Q ss_pred eeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 115 ITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 115 v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+.+|+.-+.+- .+...+++.|++.+
T Consensus 201 i~~H~Hnt~GlA~An~laAieAGa~~v 227 (593)
T PRK14040 201 LHLHCHATTGLSTATLLKAIEAGIDGV 227 (593)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCEE
Confidence 99999866553 34457788898765
No 197
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.08 E-value=5.9 Score=33.34 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=71.4
Q ss_pred cceeeeeccCccccccCCCchh-hhhhHhhcccCCCcEEEEEEEeeCCC------CHHHHHHHH---HHHHhhCCCc-eE
Q 025169 17 VSAVDVDFASRSIDVRRPVNTK-NMNDACNGTRGKKIYVRLLLSIDRRE------TTEAAMETV---KLALEMRDLG-VV 85 (257)
Q Consensus 17 v~y~E~r~~p~~~~~~~~~~~~-~~~~~~~a~~~~gir~~li~~~~r~~------~~e~~~~~~---~~~~~~~~~~-vv 85 (257)
..-+|+--. ....|++-+- .+..+.+ ...+.++. +.|.+ +.++..... +.+.+...++ |+
T Consensus 21 AdRiELc~~---l~~GGlTPS~g~i~~~~~---~~~ipv~v---MIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf 91 (201)
T PF03932_consen 21 ADRIELCSN---LEVGGLTPSLGLIRQARE---AVDIPVHV---MIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVF 91 (201)
T ss_dssp -SEEEEEBT---GGGT-B---HHHHHHHHH---HTTSEEEE---E--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCEEEECCC---ccCCCcCcCHHHHHHHHh---hcCCceEE---EECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 455666542 3456777553 4444444 34444333 34432 344444443 4444444444 33
Q ss_pred EEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC--CCCCH-hhHHHHHhcCCcEE-eecccc----c-HHHHHHHhcC
Q 025169 86 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG--EIPNK-EEIQSMLDFLPQRI-GHACCF----E-EEEWRKLKSS 156 (257)
Q Consensus 86 g~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~--E~~~~-~~i~~~l~lg~~ri-~Hg~~l----~-~~~~~~l~~~ 156 (257)
|+ |. +....+.+.++++.+.|+ ++++|+|-+ +..++ +.+...+++|.+|+ -||-.. . +.+-+++...
T Consensus 92 G~-L~-~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a 167 (201)
T PF03932_consen 92 GA-LT-EDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQA 167 (201)
T ss_dssp ---BE-TTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHH
T ss_pred Ee-EC-CCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 42 22 233446677888888876 999999964 33333 34556667899874 566432 2 2333333444
Q ss_pred CCcEEecccccceeccccCCCcccHHHHHh-cCCC
Q 025169 157 KIPVEICLTSNIRTETISSLDIHHFVDLYK-AQHP 190 (257)
Q Consensus 157 ~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~-~Gv~ 190 (257)
+-.+++.|.+-+ ....++.+.+ .|+.
T Consensus 168 ~~~i~Im~GgGv--------~~~nv~~l~~~tg~~ 194 (201)
T PF03932_consen 168 KGRIEIMPGGGV--------RAENVPELVEETGVR 194 (201)
T ss_dssp TTSSEEEEESS----------TTTHHHHHHHHT-S
T ss_pred CCCcEEEecCCC--------CHHHHHHHHHhhCCe
Confidence 445666676532 2345677666 5553
No 198
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.03 E-value=6.3 Score=35.00 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=58.1
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCC--------------CHhhHHHHH-hcCCcEE------eecccc----cHHHHH
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIP--------------NKEEIQSML-DFLPQRI------GHACCF----EEEEWR 151 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~--------------~~~~i~~~l-~lg~~ri------~Hg~~l----~~~~~~ 151 (257)
..+..+++.+.|+..|+.|-.=.|... +++...+.+ +.|+|.+ .||.+- +-+.++
T Consensus 113 Ni~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~ 192 (283)
T PRK07998 113 NIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLK 192 (283)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHH
Confidence 346678999999999998844433332 223333333 3588765 599884 445566
Q ss_pred HHhcC-CCcEEecccccceeccccCCCcccHHHHHhcCC-CEEecCCC
Q 025169 152 KLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDD 197 (257)
Q Consensus 152 ~l~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD~ 197 (257)
.+++. ++++++==. ++.....+++..+.|| +|-++||-
T Consensus 193 ~I~~~~~vPLVlHGg--------SG~~~e~~~~ai~~Gi~KiNi~Tel 232 (283)
T PRK07998 193 RIAEVSPVPLVIHGG--------SGIPPEILRSFVNYKVAKVNIASDL 232 (283)
T ss_pred HHHhhCCCCEEEeCC--------CCCCHHHHHHHHHcCCcEEEECHHH
Confidence 66543 455443322 2334456899999998 58899983
No 199
>PRK07329 hypothetical protein; Provisional
Probab=87.93 E-value=1 Score=38.98 Aligned_cols=71 Identities=7% Similarity=-0.063 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC-EEecCCCCCCCC-CChHHHHHHHHHhCCCC
Q 025169 148 EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDDSGVFS-TSVSREYDLAASAFSLG 219 (257)
Q Consensus 148 ~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~-v~lgTD~~~~~~-~~l~~E~~~a~~~~~ls 219 (257)
+.++.++++|+.++++-.+-.+ .........++..+.+.|++ |++|||.=.... ..-+++...+++..|++
T Consensus 169 ~i~~~~~~~~~~lEiNt~~~~~-~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~ 241 (246)
T PRK07329 169 RIFAKMIDNDLAFELNTKSMYL-YGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIK 241 (246)
T ss_pred HHHHHHHHcCCeEEEECccccc-CCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 4568899999999998765321 11111112357777899986 999999532222 11234444444445554
No 200
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=87.49 E-value=7.8 Score=35.06 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=87.7
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc-cHHHHHHHhcCCCcEEecccccceeccccCC
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKLKSSKIPVEICLTSNIRTETISSL 176 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~ 176 (257)
+.....+.+.|++.|+.+.-|=.-+ .+.+.++...|....+ +. +-+--+.-.+.|..+.+ -.-|...|. +-.
T Consensus 209 ~~~r~~i~~~c~~rgI~lASHDDaT--~~hV~es~~~Gv~iAE---FPtT~eAA~asr~~Gm~VlM-GAPNivrGg-SHs 281 (377)
T COG3454 209 DPNRQAIAALCRERGIALASHDDAT--VEHVAESHGLGVAIAE---FPTTVEAAKASRELGMQVLM-GAPNIVRGG-SHS 281 (377)
T ss_pred cchHHHHHHHHHHcCCceecCCcCc--HHHHHHHHhcCeeEEe---CccHHHHHHHHHHhCchhhc-CCCceeccC-Ccc
Confidence 3456677888999999999986432 5667777755543322 22 33444555566766543 223665553 223
Q ss_pred CcccHHHHHhcCCCEEecCCCCCCCCCChHHH-HHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 177 DIHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE-YDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 177 ~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E-~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
|+-...++.+.|+-=.|+||-- ..+|+.- +.++.+..+.+..+..+| +.|.+++.++++
T Consensus 282 GNvsA~ela~~glLDiLsSDY~---P~SLl~A~F~La~~~~~~~lpqAvalvt~nPA~algl~D 342 (377)
T COG3454 282 GNVSARELAQHGLLDILSSDYV---PASLLHAAFRLADLGSNISLPQAVALVTKNPARALGLTD 342 (377)
T ss_pred cchhHHHHHhCCceeeecccCC---cHHHHHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCc
Confidence 5667889999999999999942 2245544 566666667789999888 689999999985
No 201
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=86.90 E-value=12 Score=31.64 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe--ecccc-cHHHHHHHhcCCCcEEeccccc
Q 025169 91 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG--HACCF-EEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 91 g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~--Hg~~l-~~~~~~~l~~~~i~v~~cP~SN 167 (257)
|....+||..-.++.+.|.++|+++..=+ ..+.++..++++|.+.+- -+-.+ .+.-++-++-==..+.+|||--
T Consensus 85 Ga~fiVsP~~~~ev~~~a~~~~ip~~PG~---~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGG 161 (211)
T COG0800 85 GAQFIVSPGLNPEVAKAANRYGIPYIPGV---ATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGG 161 (211)
T ss_pred CCCEEECCCCCHHHHHHHHhCCCcccCCC---CCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCC
Confidence 33444567777788899999999987766 357788888988876432 11112 2333444432223356788753
Q ss_pred ceeccccCCCcccHHHHHhcCCCEEecCC
Q 025169 168 IRTETISSLDIHHFVDLYKAQHPLVLCTD 196 (257)
Q Consensus 168 ~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD 196 (257)
. ....+++++..| -+++|.-
T Consensus 162 V--------s~~N~~~yla~g-v~avG~G 181 (211)
T COG0800 162 V--------SLDNAADYLAAG-VVAVGLG 181 (211)
T ss_pred C--------CHHHHHHHHhCC-ceEEecC
Confidence 3 234689999999 4555533
No 202
>PRK08123 histidinol-phosphatase; Reviewed
Probab=86.68 E-value=0.87 Score=39.93 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCcEEecccccceeccccCCCccc----HHHHHhcCCCEEecCCC
Q 025169 147 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 147 ~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p----i~~l~~~Gv~v~lgTD~ 197 (257)
++.++.++++|+.+|++-.+ +..+... ...| ++.+.+.|++++||||.
T Consensus 200 ~~il~~~~~~g~~lEINtsg-l~~~~~~--~~yP~~~il~~~~e~g~~itlgSDA 251 (270)
T PRK08123 200 EDILALIKKRGYELDFNTAG-LRKPYCG--EPYPPGEIITLAKKLGIPLVYGSDA 251 (270)
T ss_pred HHHHHHHHHcCCEEEEEchh-hcCCCCC--CCCCcHHHHHHHHHcCCCEEEeCCC
Confidence 35678899999999998633 3321111 1223 56667889999999995
No 203
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=86.55 E-value=0.99 Score=39.15 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCcEEecccccceeccccCCCccc----HHHHHhcCCCEEecCCC
Q 025169 148 EEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 148 ~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p----i~~l~~~Gv~v~lgTD~ 197 (257)
+.++.++++|+.+|++-.+ +..+. . ...| ++.+.+.|++|++|||.
T Consensus 189 ~il~~~~~~g~~lEiNt~g-~r~~~-~--~~yP~~~il~~~~~~g~~itlgSDA 238 (253)
T TIGR01856 189 RILKLVASQGKALEFNTSG-LRKPL-E--EAYPSKELLNLAKELGIPLVLGSDA 238 (253)
T ss_pred HHHHHHHHcCCEEEEEcHh-hcCCC-C--CCCCCHHHHHHHHHcCCCEEecCCC
Confidence 5578899999999998642 22221 1 1223 46667889999999995
No 204
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=86.43 E-value=6.5 Score=37.83 Aligned_cols=130 Identities=11% Similarity=0.041 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcc--ceeeeecc-Ccccc--ccCCCchhhhhhHh---hcccCCCcE-EEEEE-EeeCCCCHHHHHHHHHH
Q 025169 6 YMDAVVEGLRAV--SAVDVDFA-SRSID--VRRPVNTKNMNDAC---NGTRGKKIY-VRLLL-SIDRRETTEAAMETVKL 75 (257)
Q Consensus 6 y~~~~~~~~~~v--~y~E~r~~-p~~~~--~~~~~~~~~~~~~~---~a~~~~gir-~~li~-~~~r~~~~e~~~~~~~~ 75 (257)
-+++.++++... .-+.+.+. ...|. .-|.|.+++++.+. +.+++.|+. +.+.. ...| .+++...+.++.
T Consensus 169 dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~R-td~efl~~~~~~ 247 (503)
T PLN03228 169 DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGR-SDKEFLCKILGE 247 (503)
T ss_pred hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccc-cCHHHHHHHHHH
Confidence 456666654422 22333333 12232 23677888876544 456667875 44443 2333 467777788777
Q ss_pred HHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 76 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 76 ~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+.+...+.+.=.|..| ..+|..+.++++..++. ++++.+|+.-..+- .+...+++.|++.+
T Consensus 248 a~~~Gad~I~l~DTvG---~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~V 315 (503)
T PLN03228 248 AIKAGATSVGIADTVG---INMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQV 315 (503)
T ss_pred HHhcCCCEEEEecCCC---CCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEE
Confidence 7766554322223333 34677788888777664 47788888765543 34456777888765
No 205
>PRK06740 histidinol-phosphatase; Validated
Probab=86.20 E-value=1.7 Score=39.44 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCcEEecccccceeccccCCCccc----HHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhCCC
Q 025169 148 EEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSL 218 (257)
Q Consensus 148 ~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p----i~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~~l 218 (257)
+.++.++++|+.++++-.+...-.. . ...| +..+.+.|++|++|||.=.... ...+++...+++..|+
T Consensus 243 ~I~~a~~~~g~~lEINt~~~~r~~~-~--e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G~ 315 (331)
T PRK06740 243 EIARALVETNTATEINAGLYYRYPV-R--EMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHGV 315 (331)
T ss_pred HHHHHHHHcCCEEEEECccccCCCC-C--CCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcCC
Confidence 3457889999999998754222111 1 1233 5667788999999999532222 2233444444444554
No 206
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=86.06 E-value=20 Score=31.23 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred cccCCCchh-hhhhHhhcccCCCcEEEEEEEeeCCC------CHHHHHHH---HHHHHhhCCCc-eEEEeccCCCCCCCh
Q 025169 30 DVRRPVNTK-NMNDACNGTRGKKIYVRLLLSIDRRE------TTEAAMET---VKLALEMRDLG-VVGIDLSGNPTKGEW 98 (257)
Q Consensus 30 ~~~~~~~~~-~~~~~~~a~~~~gir~~li~~~~r~~------~~e~~~~~---~~~~~~~~~~~-vvg~~l~g~~~~~~~ 98 (257)
...|++-+- .|+.+.+.. .+.+ +.+.|.+ +.++...+ ++.+.+...+| |+|+ |. .....+.
T Consensus 32 ~~GGlTPS~g~i~~~~~~~---~ipv---~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~-L~-~dg~vD~ 103 (248)
T PRK11572 32 KEGGLTPSLGVLKSVRERV---TIPV---HPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGV-LD-VDGHVDM 103 (248)
T ss_pred CCCCcCCCHHHHHHHHHhc---CCCe---EEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEee-EC-CCCCcCH
Confidence 356666553 455555432 3332 2334532 34444433 34444444444 3332 22 2334566
Q ss_pred hcHHHHHHHHHHcCCceeeecC--CCCCH-hhHHHHHhcCCcE-Eeeccccc----HHHHHHHhc-CCCcEEecccccce
Q 025169 99 TTFLPALKFAREQGLQITLHCG--EIPNK-EEIQSMLDFLPQR-IGHACCFE----EEEWRKLKS-SKIPVEICLTSNIR 169 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~--E~~~~-~~i~~~l~lg~~r-i~Hg~~l~----~~~~~~l~~-~~i~v~~cP~SN~~ 169 (257)
+.++++.+.|. ++++|+|-+ +..++ ..+...+++|.+| +-||-..+ -+.++.|.+ .+ ...+.|.+-+
T Consensus 104 ~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~-~~~Im~GgGV- 179 (248)
T PRK11572 104 PRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASD-GPIIMAGAGV- 179 (248)
T ss_pred HHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcC-CCEEEeCCCC-
Confidence 77888888884 899999964 22233 3455666789987 46665442 133444433 23 2225565422
Q ss_pred eccccCCCcccHHHHHhcCCCE
Q 025169 170 TETISSLDIHHFVDLYKAQHPL 191 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~v 191 (257)
....+.++...|++=
T Consensus 180 -------~~~Nv~~l~~tG~~~ 194 (248)
T PRK11572 180 -------RLSNLHKFLDAGVRE 194 (248)
T ss_pred -------CHHHHHHHHHcCCCE
Confidence 234567776777753
No 207
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=86.05 E-value=17 Score=32.78 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHcCCcee-eecCCCCCHhhHHHHHhc--CCcEEeecc---------cccHHHHHHHhcCCCcEEeccccc
Q 025169 100 TFLPALKFAREQGLQIT-LHCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~-~Ha~E~~~~~~i~~~l~l--g~~ri~Hg~---------~l~~~~~~~l~~~~i~v~~cP~SN 167 (257)
.=+++++.+.++|+.|- .|+++. ..++++.+ .|-...|.. .++++.++.++++|=.|-++-...
T Consensus 150 ~Gk~lV~~~N~LgIiiDlSH~s~k----t~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~ 225 (313)
T COG2355 150 FGKELVREMNELGIIIDLSHLSDK----TFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPA 225 (313)
T ss_pred HHHHHHHHHHhcCCEEEecccCCc----cHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehh
Confidence 35788999999999886 487654 45667765 223344653 468899999999984433222222
Q ss_pred ceeccccCCCccc-------HHHHHh-cCC-CEEecCCCCCCC----C---CChHHHHHHHHHhCCCCHHHHHHHH-HHH
Q 025169 168 IRTETISSLDIHH-------FVDLYK-AQH-PLVLCTDDSGVF----S---TSVSREYDLAASAFSLGRREMFQLA-KSA 230 (257)
Q Consensus 168 ~~l~~~~~~~~~p-------i~~l~~-~Gv-~v~lgTD~~~~~----~---~~l~~E~~~a~~~~~ls~~~v~~~~-~n~ 230 (257)
+.... .-..++ +..+.+ .|+ .|+||||=-+.. + .+-+..+-.+....|++.+++.+++ .|-
T Consensus 226 fl~~~--~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~e~~i~~i~~~N~ 303 (313)
T COG2355 226 FLRPG--GAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYSEEEIEKIAGENW 303 (313)
T ss_pred hccCC--CCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHHcCCCHHHHHHHHHHhH
Confidence 21110 001223 333333 355 599999932211 1 2333444444445689999988876 555
Q ss_pred HH
Q 025169 231 VK 232 (257)
Q Consensus 231 ~~ 232 (257)
++
T Consensus 304 lR 305 (313)
T COG2355 304 LR 305 (313)
T ss_pred HH
Confidence 44
No 208
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.95 E-value=8.7 Score=37.17 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=64.5
Q ss_pred CCCchhhhhh---HhhcccCCCcEEEEEEE-eeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH
Q 025169 33 RPVNTKNMND---ACNGTRGKKIYVRLLLS-IDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK 106 (257)
Q Consensus 33 ~~~~~~~~~~---~~~a~~~~gir~~li~~-~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~ 106 (257)
|.|.+++++. .++.+++.|.++.+... +.+ +.+++...+.++.+.+...+.+.=.|..| ..+|..+..+++
T Consensus 118 ~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG---~~~P~~v~~li~ 194 (524)
T PRK12344 118 RTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNG---GTLPHEVAEIVA 194 (524)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCC---CcCHHHHHHHHH
Confidence 5566777664 44567788988776422 212 24677777777766655444333223333 236777887777
Q ss_pred HHHHc-CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 107 FAREQ-GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 107 ~A~~~-gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
..++. ++++.+|+.-..+- .+...+++.|++++
T Consensus 195 ~l~~~~~v~i~~H~HND~GlA~ANslaAi~aGa~~V 230 (524)
T PRK12344 195 EVRAAPGVPLGIHAHNDSGCAVANSLAAVEAGARQV 230 (524)
T ss_pred HHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 76554 89999999766543 34456777898775
No 209
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=84.53 E-value=11 Score=36.12 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhc--cceeeeecc-Ccccc--ccCCCchhhhhh---HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHH
Q 025169 4 RSYMDAVVEGLRA--VSAVDVDFA-SRSID--VRRPVNTKNMND---ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 75 (257)
Q Consensus 4 ~~y~~~~~~~~~~--v~y~E~r~~-p~~~~--~~~~~~~~~~~~---~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~ 75 (257)
+.-+++.++++.. +.-+.+.+. ...|. .-|.|.+++++. .++.+++.|..+.+...-.-+.+++...+.++.
T Consensus 75 ~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 75 EKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEA 154 (494)
T ss_pred HHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHH
Confidence 3445566665543 223444433 22232 236777887764 445567778776655432212467888888887
Q ss_pred HHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 76 ALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 76 ~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+.+...+ .+.++-.-...+|..+..+++..++. ++++.+|+.-..+- .+...+++.|++++
T Consensus 155 ~~~~Ga~---~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 155 AINAGAT---TINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQV 222 (494)
T ss_pred HHHcCCC---EEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 7766443 23332111134677888887776654 36788888755442 34456777888765
No 210
>PRK05451 dihydroorotase; Provisional
Probab=84.34 E-value=32 Score=31.23 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=76.4
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCH------h--hHHHH----H-hc-CCc-EEeecccccHHHHHHHhcC--CCc
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNK------E--EIQSM----L-DF-LPQ-RIGHACCFEEEEWRKLKSS--KIP 159 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~------~--~i~~~----l-~l-g~~-ri~Hg~~l~~~~~~~l~~~--~i~ 159 (257)
+...+.++++.+++.|+++.+|++..... + .+... . .. |+. -|.|.. +++-++.+++. +|.
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~pg~~lhI~Hls--t~~~~e~i~~a~~~it 193 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHIT--TKDAVDYVREANDNLA 193 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhcCCCcEEEEecC--cHHHHHHHHhcCCCEE
Confidence 44678999999999999999998742210 1 11111 1 22 443 244442 56667776543 577
Q ss_pred EEeccccccee-------------ccccCCCc----ccHHHHHhcCCCE-EecCCCCCCC--------C-CChHH-----
Q 025169 160 VEICLTSNIRT-------------ETISSLDI----HHFVDLYKAQHPL-VLCTDDSGVF--------S-TSVSR----- 207 (257)
Q Consensus 160 v~~cP~SN~~l-------------~~~~~~~~----~pi~~l~~~Gv~v-~lgTD~~~~~--------~-~~l~~----- 207 (257)
.+.||--=... ..-|+++. .-+-+.+..|.-= .||||-.... + .++..
T Consensus 194 ~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~g~ 273 (345)
T PRK05451 194 ATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPAAL 273 (345)
T ss_pred EEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHHHH
Confidence 78998421100 00111211 0134555667544 7999965421 2 12322
Q ss_pred H-HHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 208 E-YDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 208 E-~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
+ +..+... +.+.+++.++ +.|.++..++.+
T Consensus 274 ~~~~~~~~~-~~~l~~~v~~~s~nPAkifGl~~ 305 (345)
T PRK05451 274 ELYAEVFEE-AGALDKLEAFASLNGPDFYGLPR 305 (345)
T ss_pred HHHHHHHHc-CCCHHHHHHHHhHHHHHHhCCCC
Confidence 1 1111222 3488999887 699999988854
No 211
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=84.17 E-value=1.9 Score=39.34 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred eeccCccc----cccCCCchhhhhhHhhcccCCCcEEEEEEEeeC---C----CC------HHHHHHHHHHHHhhCCC-c
Q 025169 22 VDFASRSI----DVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR---R----ET------TEAAMETVKLALEMRDL-G 83 (257)
Q Consensus 22 ~r~~p~~~----~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r---~----~~------~e~~~~~~~~~~~~~~~-~ 83 (257)
+|+.|-.. ...+.+.++.++.+++++++.|+-+|+..-.-- + .. .+.+.+.++.+.+..-+ -
T Consensus 98 iRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~i 177 (359)
T PF04551_consen 98 IRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDI 177 (359)
T ss_dssp EEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGE
T ss_pred EEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcE
Confidence 89998544 344455588999999999999988888764321 1 01 12334444444443222 1
Q ss_pred eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCH--hhHHHHHhcCC---cEEeecccc----cH-------
Q 025169 84 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLDFLP---QRIGHACCF----EE------- 147 (257)
Q Consensus 84 vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i~~~l~lg~---~ri~Hg~~l----~~------- 147 (257)
++.+-. .+ .+..++.--.++++.+.|+|...-|.... .-++.++.+|. +-||-.+.+ +|
T Consensus 178 viSlKs-Sd----v~~~i~ayr~la~~~dyPLHLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~~EV~va 252 (359)
T PF04551_consen 178 VISLKS-SD----VPETIEAYRLLAERMDYPLHLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPVEEVKVA 252 (359)
T ss_dssp EEEEEB-SS----HHHHHHHHHHHHHH--S-EEEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCCCHHHHH
T ss_pred EEEEEe-CC----hHHHHHHHHHHHHhcCCCeEEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCchHHHHHH
Confidence 333221 11 12334444445777899988877776543 23444444332 222222221 11
Q ss_pred -HHHHH--HhcCCCcEEecccccce
Q 025169 148 -EEWRK--LKSSKIPVEICLTSNIR 169 (257)
Q Consensus 148 -~~~~~--l~~~~i~v~~cP~SN~~ 169 (257)
+.++- ++.+|+-++.||+.-..
T Consensus 253 ~~IL~al~lR~~g~~~ISCPtCGRt 277 (359)
T PF04551_consen 253 FEILQALGLRKRGPEIISCPTCGRT 277 (359)
T ss_dssp HHHHHHTTSS-SS-EEEE----TT-
T ss_pred HHHHHHhCcCcCCceeeeCCCCCCc
Confidence 12232 24668889999998654
No 212
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.08 E-value=13 Score=39.58 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=60.5
Q ss_pred hhhhhHhhcccCCCcEEEEEEEee-------CC-CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHH
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSID-------RR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR 109 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~-------r~-~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~ 109 (257)
+.++..++++++.|..+...+|.. |. .+++...+..+.+.+...+.+.=-|.+| ..+|.....++...|
T Consensus 654 ~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G---~l~P~~~~~lv~~lk 730 (1146)
T PRK12999 654 ENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAG---LLKPAAAYELVSALK 730 (1146)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccC---CCCHHHHHHHHHHHH
Confidence 345556666666776555555544 21 3455555666655555443222223444 346777777777766
Q ss_pred H-cCCceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 110 E-QGLQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 110 ~-~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
+ .++++++|+.-+.+- .+...+++.|++.+.
T Consensus 731 ~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD 764 (1146)
T PRK12999 731 EEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVD 764 (1146)
T ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 5 489999999877654 344577788987763
No 213
>PF13918 PLDc_3: PLD-like domain
Probab=83.78 E-value=3.1 Score=34.26 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHHHHhhc---cceeee-eccCccccccCCCchhhhhhHhh-cccCCCcEEEEEEEeeCCCCHH
Q 025169 7 MDAVVEGLRA---VSAVDV-DFASRSIDVRRPVNTKNMNDACN-GTRGKKIYVRLLLSIDRRETTE 67 (257)
Q Consensus 7 ~~~~~~~~~~---v~y~E~-r~~p~~~~~~~~~~~~~~~~~~~-a~~~~gir~~li~~~~r~~~~e 67 (257)
++|++..|.+ ..|+++ .|.|-....+...++..||++++ |+-+-|+++|++.+.-++.+|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~~R~V~VRlLIS~W~ht~p~ 149 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAIERGVKVRLLISCWKHTDPS 149 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHHHcCCeEEEEEeecCCCChh
Confidence 4677777764 568884 45598888888899999999884 5567899999999988866553
No 214
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=83.77 E-value=9.7 Score=33.74 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHH-HHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe---
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFL-PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG--- 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~-~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~--- 140 (257)
+.+.++..++.+.+.+.+-++.+......+ .+.+.+. -+...|++..+||.+|..=..+.+.+..+++.|.+.+-
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~ 105 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQIAEVRLNH-SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDG 105 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhcc-CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcC
Confidence 456677778877777766555543322222 2333343 44556788899999999765566777888888886542
Q ss_pred -ecc-----cccHHHHHHHhcCCCcEEecccccceecccc------CCCcc-c--HHHHHhc-CCC-EEe--cCCCCC--
Q 025169 141 -HAC-----CFEEEEWRKLKSSKIPVEICLTSNIRTETIS------SLDIH-H--FVDLYKA-QHP-LVL--CTDDSG-- 199 (257)
Q Consensus 141 -Hg~-----~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~------~~~~~-p--i~~l~~~-Gv~-v~l--gTD~~~-- 199 (257)
|.. .+..+..++..+.|++++.-.. .++... +...+ | ..++.+. |+. +++ ||==+.
T Consensus 106 s~~~~~eni~~t~~v~~~a~~~gv~veaE~g---hlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~ 182 (281)
T PRK06806 106 SHLPLEENIQKTKEIVELAKQYGATVEAEIG---RVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN 182 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEee---eECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC
Confidence 111 1123456777788888753211 111000 00112 2 3444433 664 333 443111
Q ss_pred ---CCCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 025169 200 ---VFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAE 252 (257)
Q Consensus 200 ---~~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~ 252 (257)
..+.+.+.++...... .|++.+++.++...|+.-.-+..+.+....+.+.+..
T Consensus 183 ~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~ 245 (281)
T PRK06806 183 GDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLV 245 (281)
T ss_pred CCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHH
Confidence 1233555665544321 2688888888877777666666665555555554443
No 215
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=83.59 E-value=19 Score=36.60 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=65.9
Q ss_pred hcCCcEEeecccc---cHHHHHHHhcCCCcEEecccccce--eccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHH
Q 025169 133 DFLPQRIGHACCF---EEEEWRKLKSSKIPVEICLTSNIR--TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSR 207 (257)
Q Consensus 133 ~lg~~ri~Hg~~l---~~~~~~~l~~~~i~v~~cP~SN~~--l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~ 207 (257)
..|+|-|--|+-+ +++..+..++.||.+. -|++... +|- ...--....++||||..|||+|. +-.+
T Consensus 78 ~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FI-GP~~e~ld~~Gd----Kv~Ar~~A~~agvPvipgt~~~~----~~~e 148 (1149)
T COG1038 78 RSGADAIHPGYGFLSENPEFARACAEAGITFI-GPKPEVLDMLGD----KVKARNAAIKAGVPVIPGTDGPI----ETIE 148 (1149)
T ss_pred HcCCCeecCCcccccCCHHHHHHHHHcCCEEe-CCCHHHHHHhcc----HHHHHHHHHHcCCCccCCCCCCc----ccHH
Confidence 3589998777754 6788999999999874 6766432 111 22234557789999999999875 3346
Q ss_pred HHHHHHHhCC---------------C----CHHHHHHH---HHHHHHHcCCChH
Q 025169 208 EYDLAASAFS---------------L----GRREMFQL---AKSAVKFIFANGR 239 (257)
Q Consensus 208 E~~~a~~~~~---------------l----s~~~v~~~---~~n~~~~~~~~~~ 239 (257)
|...+++.+| | +.+++.+. ++.-++++|-+++
T Consensus 149 e~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~e 202 (1149)
T COG1038 149 EALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDE 202 (1149)
T ss_pred HHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6666666543 2 55666554 4666788887664
No 216
>PRK00208 thiG thiazole synthase; Reviewed
Probab=83.54 E-value=23 Score=30.77 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=78.7
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc---CCceeeecCCCCCHhhHHHH
Q 025169 55 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 55 ~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~---gl~v~~Ha~E~~~~~~i~~~ 131 (257)
.++....--.+.+++....+++++.....++-+.+.+++.+. .....+.++.|+++ |+.+..-+.++ +...+..
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~l-lpd~~~tv~aa~~L~~~Gf~vlpyc~~d--~~~ak~l 140 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTL-LPDPIETLKAAEILVKEGFVVLPYCTDD--PVLAKRL 140 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCC-CcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHH
Confidence 444444444568888888888888776668888888876543 34566777778877 99988777543 5555666
Q ss_pred HhcCCcE-------Eeecccc-cHHHHHHHhcC-CCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 132 LDFLPQR-------IGHACCF-EEEEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 132 l~lg~~r-------i~Hg~~l-~~~~~~~l~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
.++|++. ||-|.-+ +++.++.+++. +++|..- -.++. -..+.+.++.|..
T Consensus 141 ~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve----aGI~t-----peda~~AmelGAd 199 (250)
T PRK00208 141 EEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD----AGIGT-----PSDAAQAMELGAD 199 (250)
T ss_pred HHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe----CCCCC-----HHHHHHHHHcCCC
Confidence 6677654 3433333 68888888874 5554321 11111 1237788887764
No 217
>PLN02321 2-isopropylmalate synthase
Probab=83.06 E-value=21 Score=35.32 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhccc--eeeeecc-Cccccc--cCCCchhhhhhHh---hcccCCCcE-EEEEEE-eeCCCCHHHHHHHH
Q 025169 4 RSYMDAVVEGLRAVS--AVDVDFA-SRSIDV--RRPVNTKNMNDAC---NGTRGKKIY-VRLLLS-IDRRETTEAAMETV 73 (257)
Q Consensus 4 ~~y~~~~~~~~~~v~--y~E~r~~-p~~~~~--~~~~~~~~~~~~~---~a~~~~gir-~~li~~-~~r~~~~e~~~~~~ 73 (257)
+.-+++.++++.++. .+.+..+ ...|.. -|.|.+|+++.+. +.+++.|.. +.+..- ..| .+++...+.+
T Consensus 168 ~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r-td~d~l~~~~ 246 (632)
T PLN02321 168 KKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR-SDPEFLYRIL 246 (632)
T ss_pred HHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC-CCHHHHHHHH
Confidence 344566666655443 2334443 223332 3567788776544 556667763 444332 223 4678888888
Q ss_pred HHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 74 KLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 74 ~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
+.+.+...+ .+.++-.-....|.++.++++..++. ++++.+|+.-..+- .+...+++.|++++
T Consensus 247 ~~a~~aGa~---~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~V 316 (632)
T PLN02321 247 GEVIKAGAT---TLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQV 316 (632)
T ss_pred HHHHHcCCC---EEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 877765443 22332111134678888888877664 45688888654432 34456777888775
No 218
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=82.18 E-value=31 Score=29.45 Aligned_cols=93 Identities=12% Similarity=-0.016 Sum_probs=49.4
Q ss_pred ccceeeeeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEee-------CC---C-C-H----HHHHHHHHHHHhh
Q 025169 16 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSID-------RR---E-T-T----EAAMETVKLALEM 79 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~-------r~---~-~-~----e~~~~~~~~~~~~ 79 (257)
.+.++|+++ |. ..-++.+.+..++.|+++..+.+.. |. . + . +...+.++.+...
T Consensus 27 G~~~vEl~~-~~---------~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 96 (254)
T TIGR03234 27 GFTGVEYLF-PY---------DWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARAL 96 (254)
T ss_pred CCCEEEecC-Cc---------cCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHh
Confidence 588999975 32 1123444566778898876542111 00 0 1 1 2223445555555
Q ss_pred CCCceEEEeccCCCCCCCh--------hcHHHHHHHHHHcCCceeeec
Q 025169 80 RDLGVVGIDLSGNPTKGEW--------TTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 80 ~~~~vvg~~l~g~~~~~~~--------~~~~~~~~~A~~~gl~v~~Ha 119 (257)
..+ .+.+.....+...+. +.++++.+.|++.|+.+.++.
T Consensus 97 g~~-~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 97 GCP-QVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred CCC-EEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 544 333322222222121 336778888999999999885
No 219
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=81.96 E-value=37 Score=30.25 Aligned_cols=186 Identities=9% Similarity=0.004 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH-HHHHHHc--CCceeeecCCCCCHhhHHHHHhcCCcEEe-
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIG- 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~-~~~A~~~--gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~- 140 (257)
+.+.++..++.+.+.+.+-++.+......+....+.+... ...|++. ++||.+|..=. +.+.+.++++.|.+.+-
T Consensus 27 n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~ 105 (293)
T PRK07315 27 NLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMF 105 (293)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEE
Confidence 4666777777777777765555433222222223444443 3456667 67999998655 45677788888876541
Q ss_pred ecccc--------cHHHHHHHhcCCCcEEecccc-----cceeccccCCCccc--HHHHHhcCCC---EEecCC---CCC
Q 025169 141 HACCF--------EEEEWRKLKSSKIPVEICLTS-----NIRTETISSLDIHH--FVDLYKAQHP---LVLCTD---DSG 199 (257)
Q Consensus 141 Hg~~l--------~~~~~~~l~~~~i~v~~cP~S-----N~~l~~~~~~~~~p--i~~l~~~Gv~---v~lgTD---~~~ 199 (257)
=+-.+ +.+..++....|++++.-... +...+. ..+ ..| ..++.+-|+. +++||= -+.
T Consensus 106 d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~-s~~-t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 106 DGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGK-GEL-APIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCc-cCC-CCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 12122 224456666778877543221 000010 000 122 3455566664 333333 111
Q ss_pred ---CCCCChHHHHHHHHH-h-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 200 ---VFSTSVSREYDLAAS-A-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 200 ---~~~~~l~~E~~~a~~-~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
..+.+..++++.... . .|++.+++.++..+|+.-.-+..+.+..+.+.+.+..+
T Consensus 184 ~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~ 248 (293)
T PRK07315 184 NWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFAR 248 (293)
T ss_pred CCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHH
Confidence 122355566655542 1 24778888877777776666666666555555555443
No 220
>PRK06256 biotin synthase; Validated
Probab=81.88 E-value=19 Score=32.41 Aligned_cols=81 Identities=22% Similarity=0.182 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCC-CChhcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~-~~~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
++++..+.++.+.+.... .+.+..+|.+.. ...+.+.++++..++. ++.+.++.+- ..++.+....+.|++++.|+
T Consensus 92 s~eeI~~~~~~~~~~g~~-~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAG-TFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CHHHHHHHHHHHHHCCCC-EEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHhCCCEEecC
Confidence 556655555544433221 122222232221 1224566667666654 5556666553 23444555556788888887
Q ss_pred ccccH
Q 025169 143 CCFEE 147 (257)
Q Consensus 143 ~~l~~ 147 (257)
...++
T Consensus 170 lEts~ 174 (336)
T PRK06256 170 LETSR 174 (336)
T ss_pred CccCH
Confidence 65443
No 221
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=81.77 E-value=7.2 Score=35.81 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCC--CCChhcHHHHHHHHHHcCCceeeecCCCC----C--HhhHHHHHhcCC
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPT--KGEWTTFLPALKFAREQGLQITLHCGEIP----N--KEEIQSMLDFLP 136 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~--~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~----~--~~~i~~~l~lg~ 136 (257)
+.++..+.++.+.++.-+.+.. .|...+. ..-...|+++.+.|+++|+.+.+-.+... + ..++....++|.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFT-SL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi 90 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFT-SLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGI 90 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEE-EE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-
T ss_pred CHHHHHHHHHHHHHCCCCEEEC-CCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCC
Confidence 4667778888877664333322 2322222 12347788999999999999999885331 0 112334445776
Q ss_pred c--EEeecccccHHHHHHHhcCCCcEEecccc
Q 025169 137 Q--RIGHACCFEEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 137 ~--ri~Hg~~l~~~~~~~l~~~~i~v~~cP~S 166 (257)
+ |+..|+. .+++..|.+.|+.++++.+.
T Consensus 91 ~~lRlD~Gf~--~~~ia~ls~ng~~I~LNASt 120 (357)
T PF05913_consen 91 DGLRLDYGFS--GEEIAKLSKNGIKIELNAST 120 (357)
T ss_dssp SEEEESSS-S--CHHHHHHTTT-SEEEEETTT
T ss_pred CEEEECCCCC--HHHHHHHHhCCCEEEEECCC
Confidence 4 7888874 46666776668999888665
No 222
>PLN02599 dihydroorotase
Probab=81.63 E-value=43 Score=30.79 Aligned_cols=139 Identities=16% Similarity=0.121 Sum_probs=76.1
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCC-------H-hhHHHHHh--c--CCcEEeecccc-cHHHHHHHhc--C-CCcEE
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPN-------K-EEIQSMLD--F--LPQRIGHACCF-EEEEWRKLKS--S-KIPVE 161 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~-------~-~~i~~~l~--l--g~~ri~Hg~~l-~~~~~~~l~~--~-~i~v~ 161 (257)
...+.++++.+++.|+++.+|+..... + ..+...+. + -+..-.|-.++ +.+-++.+++ . ++..+
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~~~vtae 214 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGDGNVAAT 214 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccCCCEEEE
Confidence 367889999999999999999864221 1 11222331 1 11111355555 4455666653 2 57888
Q ss_pred ecccc------ccee---c----cccCCCc----ccHHHHHhcCCC-EEecCCCCCC-----------CC-CCh---HHH
Q 025169 162 ICLTS------NIRT---E----TISSLDI----HHFVDLYKAQHP-LVLCTDDSGV-----------FS-TSV---SRE 208 (257)
Q Consensus 162 ~cP~S------N~~l---~----~~~~~~~----~pi~~l~~~Gv~-v~lgTD~~~~-----------~~-~~l---~~E 208 (257)
+||-= .+.. + .-|.++. --+.+.+..|.. ..||||-... .| .+. +.-
T Consensus 215 ~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~~~l~~ 294 (364)
T PLN02599 215 VTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAPVALSL 294 (364)
T ss_pred ecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCCCCCcccHHHHHHH
Confidence 99841 1110 1 1111111 114556677886 7899996431 12 121 111
Q ss_pred HHHHHHhCCCCHHHHHHH-HHHHHHHcCCC
Q 025169 209 YDLAASAFSLGRREMFQL-AKSAVKFIFAN 237 (257)
Q Consensus 209 ~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~ 237 (257)
+.......| +.+++.++ +.|+++..+++
T Consensus 295 l~~~~~~~g-~l~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 295 YAKAFEEAG-ALDKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HHHHHHhcC-CHHHHHHHHhHHHHHHhCCC
Confidence 211222235 88899887 59999999985
No 223
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=81.10 E-value=13 Score=33.37 Aligned_cols=188 Identities=9% Similarity=-0.005 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH-HHHHcC-CceeeecCCCCCHhhHHHHHhcCCcEE-ee
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI-GH 141 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~-~A~~~g-l~v~~Ha~E~~~~~~i~~~l~lg~~ri-~H 141 (257)
+.+.++..++.+...+.+-++.+......+ ...+.+..+.. .|++.. +||.+|..=..+.+.+..++++|-+.+ -=
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~D 104 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLFIQASEGAIKY-MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMID 104 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCccHHhh-CChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 466777788877777776566543322222 23344555544 456664 899999976666778888888887653 12
Q ss_pred cccc--------cHHHHHHHhcCCCcEEeccccc--ceec----cccCCCccc--HHHHHhc-CC---CEEecCCCCCC-
Q 025169 142 ACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTE----TISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV- 200 (257)
Q Consensus 142 g~~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~----~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~- 200 (257)
|-++ +.+.+++...+|+.||-=...= .--+ .-...-+.| ..++.++ || -|++||==...
T Consensus 105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 184 (307)
T PRK05835 105 ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFK 184 (307)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccC
Confidence 3233 2345677777888886422110 0000 000011223 3445543 55 35666643221
Q ss_pred ------CCCChHHHHHHHHHh-------CCCCHH---------------------HHHHHHHHHHHHcCCChHHHHHHHH
Q 025169 201 ------FSTSVSREYDLAASA-------FSLGRR---------------------EMFQLAKSAVKFIFANGRVKEDLKE 246 (257)
Q Consensus 201 ------~~~~l~~E~~~a~~~-------~~ls~~---------------------~v~~~~~n~~~~~~~~~~~k~~l~~ 246 (257)
.+.+++++++..... .|++.+ ++.++...|+.=.-+..+.|..+.+
T Consensus 185 ~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~ 264 (307)
T PRK05835 185 FKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIA 264 (307)
T ss_pred CCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHH
Confidence 112444444443321 234444 7777777777777777777777777
Q ss_pred HHHHHHh
Q 025169 247 IFDLAEK 253 (257)
Q Consensus 247 ~~~~~~~ 253 (257)
.+.+..+
T Consensus 265 ~~~~~~~ 271 (307)
T PRK05835 265 EVRKVAN 271 (307)
T ss_pred HHHHHHH
Confidence 7666554
No 224
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=80.78 E-value=34 Score=29.72 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=78.1
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc---CCceeeecCCCCCHhhHHHH
Q 025169 55 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 55 ~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~---gl~v~~Ha~E~~~~~~i~~~ 131 (257)
.++....--.+.+++..+.+++.+.....++-+.+.+++.+.-| ...+.++.|+++ |+.+..-+.. ++...+..
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp-d~~~tv~aa~~L~~~Gf~vlpyc~d--d~~~ar~l 140 (248)
T cd04728 64 TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLP-DPIETLKAAEILVKEGFTVLPYCTD--DPVLAKRL 140 (248)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcccccc-CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHH
Confidence 44444443456788888888888876666888888887765443 466667777777 9988867753 35555666
Q ss_pred HhcCCcE-------Eeecccc-cHHHHHHHhcC-CCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 132 LDFLPQR-------IGHACCF-EEEEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 132 l~lg~~r-------i~Hg~~l-~~~~~~~l~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
.++|++- ||-|.-+ +++.++.+++. +++|..- -.+++ -..+.+.++.|..
T Consensus 141 ~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e----gGI~t-----peda~~AmelGAd 199 (248)
T cd04728 141 EDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD----AGIGT-----PSDAAQAMELGAD 199 (248)
T ss_pred HHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe----CCCCC-----HHHHHHHHHcCCC
Confidence 6677654 3433333 68888888874 4554321 11111 1237788887764
No 225
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=80.57 E-value=53 Score=31.18 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=76.5
Q ss_pred ccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhh--CCC------ceEEEeccCCCCCCChhcHHHHHHHHHH-cCCceee
Q 025169 47 TRGKKIYVRLLLSIDRRETTEAAMETVKLALEM--RDL------GVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITL 117 (257)
Q Consensus 47 ~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~--~~~------~vvg~~l~g~~~~~~~~~~~~~~~~A~~-~gl~v~~ 117 (257)
...+.-+.++...+.+..+.++..+.++....+ ... .++.++..+. .++.+.++++..++ .++|+.+
T Consensus 85 e~tf~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~----dp~~v~~~Vk~V~~~~dvPLSI 160 (450)
T PRK04165 85 EKTFFNPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG----DPEKFAKAVKKVAETTDLPLIL 160 (450)
T ss_pred CcCCCCCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC----CHHHHHHHHHHHHHhcCCCEEE
Confidence 344444556666666656655555554443211 111 1333333221 56778888888877 5999987
Q ss_pred ecCCCCCHhhHHHHHhcCCcE--Eeeccccc--HHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCC
Q 025169 118 HCGEIPNKEEIQSMLDFLPQR--IGHACCFE--EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH 189 (257)
Q Consensus 118 Ha~E~~~~~~i~~~l~lg~~r--i~Hg~~l~--~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv 189 (257)
=. .+++.+..+++.|++. +-.+...+ ++..++.++.|.++++.+.. +.. -..-+..+.++|+
T Consensus 161 DT---~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d---l~~----L~~lv~~~~~~GI 226 (450)
T PRK04165 161 CS---EDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN---LEE----LKELVEKLQAAGI 226 (450)
T ss_pred eC---CCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchh---HHH----HHHHHHHHHHcCC
Confidence 64 4677788888887753 44444444 55667778889998876632 111 1123566778898
No 226
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=80.41 E-value=38 Score=29.42 Aligned_cols=139 Identities=10% Similarity=0.028 Sum_probs=76.3
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCC-CCChhcHHHHHHHHHHcCCceeeecC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~-~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
.+++.+++.|+...++.+. +++...+.++++.+|.. -..++|+.+... ..+.+.+..+.+......-.+ .=.|
T Consensus 23 ~~l~~a~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~-~aIG 96 (258)
T PRK11449 23 ASLQRAAQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKV-VAVG 96 (258)
T ss_pred HHHHHHHHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCE-EEEE
Confidence 3344444557766555443 46667778888877753 234455443211 122334444433332211011 1135
Q ss_pred CCCC-------H-h--------hHHHHHhcCCcEEeecccccHHHHHHHhcCCC---cEEecccccceeccccCCCcccH
Q 025169 121 EIPN-------K-E--------EIQSMLDFLPQRIGHACCFEEEEWRKLKSSKI---PVEICLTSNIRTETISSLDIHHF 181 (257)
Q Consensus 121 E~~~-------~-~--------~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i---~v~~cP~SN~~l~~~~~~~~~pi 181 (257)
|.+= . + .+.-|.+++.-.+-|+....++.++.+++.++ .+.||=+.+. .-.
T Consensus 97 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~----------~~a 166 (258)
T PRK11449 97 EIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSL----------QQA 166 (258)
T ss_pred ecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCH----------HHH
Confidence 5431 0 0 11223335667789999988999999998754 2666644332 236
Q ss_pred HHHHhcCCCEEecCC
Q 025169 182 VDLYKAQHPLVLCTD 196 (257)
Q Consensus 182 ~~l~~~Gv~v~lgTD 196 (257)
.++++.|.-+++|.-
T Consensus 167 ~~~l~~G~~iS~~g~ 181 (258)
T PRK11449 167 ERFVQLGYKIGVGGT 181 (258)
T ss_pred HHHHHCCCEEEeCcc
Confidence 789999999988764
No 227
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=80.40 E-value=30 Score=31.42 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=26.4
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCc
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 137 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ 137 (257)
.+.+.++.+++.|++.|+.+..=. .+..++....++|++
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stp---fd~~svd~l~~~~v~ 111 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTP---FDLESADFLEDLGVP 111 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEe---CCHHHHHHHHhcCCC
Confidence 567889999999999999987654 334444433344443
No 228
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=80.30 E-value=39 Score=29.50 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=87.1
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCC-CCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~-~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++++.+++.|+...+..+... +.....++++.+|.. -..++|+.+.. ...+.+.+..+.+.+.+. +-.+=.
T Consensus 20 ~~vi~~a~~~gv~~~~~~g~~~----~~~~~~~~la~~y~~-v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~--~~vvaI 92 (256)
T COG0084 20 DEVIARAREAGVKKMVVVGTDL----EDFKRALELAEKYPN-VYAAVGVHPLDADEHSEEDLEELEQLAEHH--PKVVAI 92 (256)
T ss_pred HHHHHHHHHcCCcEEEEeecCH----HHHHHHHHHHHhCCC-eEEEEeeCCCccccccHHHHHHHHHHHhcC--CCeEEE
Confidence 3455556667877777766553 445577788888763 23445554322 122467788888887651 111123
Q ss_pred CCCC-------C-Hh---------hHHHHHhcCCcEEeecccccHHHHHHHhcCC---CcEEecccccceeccccCCCcc
Q 025169 120 GEIP-------N-KE---------EIQSMLDFLPQRIGHACCFEEEEWRKLKSSK---IPVEICLTSNIRTETISSLDIH 179 (257)
Q Consensus 120 ~E~~-------~-~~---------~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~---i~v~~cP~SN~~l~~~~~~~~~ 179 (257)
||.+ . .. .++-|.+++--.+.|+-...++.++.|++.+ -.+.||=++...
T Consensus 93 GEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e---------- 162 (256)
T COG0084 93 GEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAE---------- 162 (256)
T ss_pred EecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHH----------
Confidence 6654 1 00 1223334566788999999999999998864 457788665332
Q ss_pred cHHHHHhcCCCEEecCCC
Q 025169 180 HFVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 180 pi~~l~~~Gv~v~lgTD~ 197 (257)
-.+++++.|.-+++|..-
T Consensus 163 ~a~~~~d~G~yisisG~i 180 (256)
T COG0084 163 EARKLLDLGFYISISGIV 180 (256)
T ss_pred HHHHHHHcCeEEEECcee
Confidence 357899999999998763
No 229
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=80.16 E-value=42 Score=29.71 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=56.5
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCC--------------CHhhHHHHHh-cCCcEEe------ecccc-----cHHHHHH
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIP--------------NKEEIQSMLD-FLPQRIG------HACCF-----EEEEWRK 152 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~--------------~~~~i~~~l~-lg~~ri~------Hg~~l-----~~~~~~~ 152 (257)
+..+++.+.|+..|+.+..=.|... ++++..++.+ .|+|-++ ||++- +-+.++.
T Consensus 115 ~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~ 194 (282)
T TIGR01859 115 ALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKE 194 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHH
Confidence 4456778888988987764443311 3444556665 7888776 88773 4455666
Q ss_pred HhcC-CCcEEecccccceeccccCCCcccHHHHHhcCC-CEEecCCC
Q 025169 153 LKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDD 197 (257)
Q Consensus 153 l~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD~ 197 (257)
+++. ++|++. .|. +++....+++..+.|+ .|.++||-
T Consensus 195 i~~~~~iPlv~-------hGg-SGi~~e~i~~~i~~Gi~kiNv~T~l 233 (282)
T TIGR01859 195 IKELTNIPLVL-------HGA-SGIPEEQIKKAIKLGIAKINIDTDC 233 (282)
T ss_pred HHHHhCCCEEE-------ECC-CCCCHHHHHHHHHcCCCEEEECcHH
Confidence 6543 455532 231 2223346888999998 48899884
No 230
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=80.14 E-value=23 Score=31.43 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHHHHH-cCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc-cHHHHHHHhcCCCcEEeccc
Q 025169 101 FLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 101 ~~~~~~~A~~-~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~ 165 (257)
+.++++..++ .++++.+-. ..++-++.+++.|++.|---..+ +++-++.+++.|+++++++.
T Consensus 78 v~pvI~~l~~~~~~~ISIDT---~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 78 VIPVVEAIAQRFEVWISVDT---SKPEVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred HHHHHHHHHhcCCCeEEEEC---CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcC
Confidence 3345566664 478876654 45677788999999876332223 66768889999999999886
No 231
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.12 E-value=19 Score=29.18 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred cceeeeeccCc-cccccCCCchhhhhhHhhcccCCCcEEEEEEEeeCCCC---------------HHHHHHHHHHHHhhC
Q 025169 17 VSAVDVDFASR-SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET---------------TEAAMETVKLALEMR 80 (257)
Q Consensus 17 v~y~E~r~~p~-~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~~~---------------~e~~~~~~~~~~~~~ 80 (257)
+.++|+++.+. ..... .+-++++.+..++.|+.+..+....+... .+...+.++.+..+.
T Consensus 9 ~~~vE~~~~~~~~~~~~----~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg 84 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEK----DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLG 84 (213)
T ss_dssp HSEEEEEHHHHSHHTHH----HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCcccccc----hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhC
Confidence 67889988843 21111 34566777888999999755554444222 344566667777665
Q ss_pred CCceEEEecc--CCCCCCCh--------hcHHHHHHHHHHcCCceeeecCCCCCH------hhHHHHHh-cCCcE-----
Q 025169 81 DLGVVGIDLS--GNPTKGEW--------TTFLPALKFAREQGLQITLHCGEIPNK------EEIQSMLD-FLPQR----- 138 (257)
Q Consensus 81 ~~~vvg~~l~--g~~~~~~~--------~~~~~~~~~A~~~gl~v~~Ha~E~~~~------~~i~~~l~-lg~~r----- 138 (257)
.+ .+.+.+. ......+. +.++++.+.|+++|+.+.++-.-.... +.+...++ .+.+.
T Consensus 85 ~~-~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 163 (213)
T PF01261_consen 85 AK-YIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICF 163 (213)
T ss_dssp BS-EEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEE
T ss_pred CC-ceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEE
Confidence 54 4444433 12222221 356778888999999988886433321 34444443 34322
Q ss_pred -Eeeccccc---HHHHHHHhcCCCcEEe
Q 025169 139 -IGHACCFE---EEEWRKLKSSKIPVEI 162 (257)
Q Consensus 139 -i~Hg~~l~---~~~~~~l~~~~i~v~~ 162 (257)
++|..... .+.++.++++ |...|
T Consensus 164 D~~h~~~~~~~~~~~i~~~~~~-i~~vH 190 (213)
T PF01261_consen 164 DTGHLIMAGEDPDEAIKRLAPR-IKHVH 190 (213)
T ss_dssp EHHHHHHTTHHHHHHHHHHHHG-EEEEE
T ss_pred ehHHHHHcCCCHHHHHHHhhcc-eeEEE
Confidence 25666542 3445666555 44333
No 232
>PRK07094 biotin synthase; Provisional
Probab=79.59 E-value=32 Score=30.65 Aligned_cols=77 Identities=23% Similarity=0.159 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHH-cCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~-~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
++++..+.++.+.+. ++-.+.+. |.+...+.+.+.++++..++ .++.++++.+.. ..+.+....+.|++++.+|
T Consensus 71 s~eei~~~~~~~~~~---g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~-~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYEL---GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGER-SYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHC---CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCC-CHHHHHHHHHcCCCEEEec
Confidence 566666665554443 23333333 33333456778888888887 588888887653 3445555556899988877
Q ss_pred ccc
Q 025169 143 CCF 145 (257)
Q Consensus 143 ~~l 145 (257)
+..
T Consensus 147 lEs 149 (323)
T PRK07094 147 HET 149 (323)
T ss_pred ccc
Confidence 654
No 233
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=79.57 E-value=28 Score=32.58 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=66.4
Q ss_pred cCCCchhhhhhHh---hcccCCCcEEEE-EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHH
Q 025169 32 RRPVNTKNMNDAC---NGTRGKKIYVRL-LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF 107 (257)
Q Consensus 32 ~~~~~~~~~~~~~---~a~~~~gir~~l-i~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~ 107 (257)
-+.|.+++++.+. +.+++.|+.+++ ..++.| .+++...+.++.+..+....+.=.|-.| ..+|..+..+++.
T Consensus 108 ~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~~i~l~DTvG---~~~P~~~~~~i~~ 183 (409)
T COG0119 108 LKKTREEVLERAVDAVEYARDHGLEVRFSAEDATR-TDPEFLAEVVKAAIEAGADRINLPDTVG---VATPNEVADIIEA 183 (409)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecccc-CCHHHHHHHHHHHHHcCCcEEEECCCcC---ccCHHHHHHHHHH
Confidence 3567777777544 667888988887 344555 5788888888877754333222222222 3467777777777
Q ss_pred HHHc-C--CceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 108 AREQ-G--LQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 108 A~~~-g--l~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
.++. . .++.+|+.-..+- .+...+++.|++++
T Consensus 184 l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 184 LKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred HHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 6653 3 8899999765542 34456677788765
No 234
>PRK10812 putative DNAse; Provisional
Probab=78.98 E-value=43 Score=29.24 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=74.5
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 121 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E 121 (257)
.+++.+++.|+...++.++ +++...+.++++.+|.. -..++|+.+... .....+..+.+.+++ . -.+=.||
T Consensus 24 ~vl~~a~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~-~~~~~~~~l~~~~~~-~--~vvaIGE 94 (265)
T PRK10812 24 DVLAKAAARDVKFCLAVAT----TLPGYRHMRDLVGERDN-VVFSCGVHPLNQ-DEPYDVEELRRLAAE-E--GVVAMGE 94 (265)
T ss_pred HHHHHHHHcCCCEEEEeCC----CHHHHHHHHHHHhhCCC-eEEEEEeCCCCC-CChhHHHHHHHHhcC-C--CEEEEEe
Confidence 4444455668766555443 46677778888877753 233444433211 123345555444432 1 1112344
Q ss_pred CCC-------Hhh---------HHHHHhcCCcEEeecccccHHHHHHHhcCCC----cEEecccccceeccccCCCcccH
Q 025169 122 IPN-------KEE---------IQSMLDFLPQRIGHACCFEEEEWRKLKSSKI----PVEICLTSNIRTETISSLDIHHF 181 (257)
Q Consensus 122 ~~~-------~~~---------i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i----~v~~cP~SN~~l~~~~~~~~~pi 181 (257)
.+= ... +.-+.+++.-.+-|+....++.++.|++.++ .+.||=+.+. .-.
T Consensus 95 iGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~fsG~~----------~~a 164 (265)
T PRK10812 95 TGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDR----------ETA 164 (265)
T ss_pred eecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEeecCCH----------HHH
Confidence 420 111 1223335777889998888888999987654 2456643221 236
Q ss_pred HHHHhcCCCEEec
Q 025169 182 VDLYKAQHPLVLC 194 (257)
Q Consensus 182 ~~l~~~Gv~v~lg 194 (257)
.++++.|.-++++
T Consensus 165 ~~~~~~G~~is~~ 177 (265)
T PRK10812 165 GKLLDLGFYISFS 177 (265)
T ss_pred HHHHHCCCEEEEC
Confidence 7889999999987
No 235
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=78.67 E-value=26 Score=37.26 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=57.3
Q ss_pred hhhHhhcccCCCcEEEEEEEee-------CC-CCHHHHHHHHHHHHhhCCCceEEE-eccCCCCCCChhcHHHHHHHHHH
Q 025169 40 MNDACNGTRGKKIYVRLLLSID-------RR-ETTEAAMETVKLALEMRDLGVVGI-DLSGNPTKGEWTTFLPALKFARE 110 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~-------r~-~~~e~~~~~~~~~~~~~~~~vvg~-~l~g~~~~~~~~~~~~~~~~A~~ 110 (257)
+..+++++++.|..+...+|.. |. .+.+...+..+...+...+ ++.+ |.+| ..+|.....++...|+
T Consensus 654 ~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad-~I~ikDt~G---ll~P~~~~~Lv~~lk~ 729 (1143)
T TIGR01235 654 MRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAH-ILGIKDMAG---LLKPAAAKLLIKALRE 729 (1143)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCC-EEEECCCcC---CcCHHHHHHHHHHHHH
Confidence 4445566777787765555544 21 2344444555544444333 2222 3333 3467777777777655
Q ss_pred -cCCceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 111 -QGLQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 111 -~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
.++++++|+.-+.+- .....|++.|++.+.
T Consensus 730 ~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD 762 (1143)
T TIGR01235 730 KTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVD 762 (1143)
T ss_pred hcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEE
Confidence 489999999877653 345677888988764
No 236
>PRK08508 biotin synthase; Provisional
Probab=78.54 E-value=38 Score=29.78 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEec--cCC-CCCCChhcHHHHHHHHHHcCCceeeecCCCC-CHhhHHHHHhcCCcEE
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDL--SGN-PTKGEWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLPQRI 139 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l--~g~-~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~-~~~~i~~~l~lg~~ri 139 (257)
.+++++.+.++.+.+.... .+.+ +|. ......+.+.++++..++.+..+++|+.-.. ..+.++...+.|++++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~---~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGAL---GFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCHHHHHHHHHHHHHCCCC---EEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4777777776665544322 2222 121 1112345677778888887766777764322 2344444446789998
Q ss_pred eeccc
Q 025169 140 GHACC 144 (257)
Q Consensus 140 ~Hg~~ 144 (257)
.|+.-
T Consensus 117 ~~~lE 121 (279)
T PRK08508 117 NHNLE 121 (279)
T ss_pred ccccc
Confidence 88743
No 237
>PRK14057 epimerase; Provisional
Probab=78.32 E-value=46 Score=29.10 Aligned_cols=170 Identities=11% Similarity=0.012 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecc-C---CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLS-G---NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~-g---~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
.-...+.++...+..-+ .+-+|+- | +..++.|+.++.+ ++ .+++.+|.-=..+...+....+.|++.| .
T Consensus 31 ~~~L~~el~~l~~~g~d-~lHiDVMDG~FVPNitfGp~~i~~i----~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 31 WIALHRYLQQLEALNQP-LLHLDLMDGQFCPQFTVGPWAVGQL----PQ-TFIKDVHLMVADQWTAAQACVKAGAHCITL 104 (254)
T ss_pred HHHHHHHHHHHHHCCCC-EEEEeccCCccCCccccCHHHHHHh----cc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEEE
Confidence 33444555555554333 5566653 3 2224566666665 23 7999999864444456666777899875 5
Q ss_pred ecccc-c-HHHHHHHhcCC-----------CcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHH
Q 025169 141 HACCF-E-EEEWRKLKSSK-----------IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSR 207 (257)
Q Consensus 141 Hg~~l-~-~~~~~~l~~~~-----------i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~ 207 (257)
|.-.. . ...++.+++.| ..+++||.+... .+..+++.==-|.+=|=+|+..|..+..
T Consensus 105 H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e----------~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~ 174 (254)
T PRK14057 105 QAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD----------VIIPILSDVEVIQLLAVNPGYGSKMRSS 174 (254)
T ss_pred eeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH----------HHHHHHHhCCEEEEEEECCCCCchhccH
Confidence 76532 2 36788888887 578889865332 2333333322344444456555433222
Q ss_pred -------HHHHHHHh----------CCCCHHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHH
Q 025169 208 -------EYDLAASA----------FSLGRREMFQLAKSAVK------FIFANGRVKEDLKEIFDLAE 252 (257)
Q Consensus 208 -------E~~~a~~~----------~~ls~~~v~~~~~n~~~------~~~~~~~~k~~l~~~~~~~~ 252 (257)
+++..... -|++.+.+.++...|+. +.|-+++ .++.++++.+..
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d-~~~~i~~l~~~~ 241 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDR-LVENTRSWRAMF 241 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCC-HHHHHHHHHHHH
Confidence 22222211 14677777777665554 3443333 334444554443
No 238
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=77.89 E-value=50 Score=29.29 Aligned_cols=135 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccc--eeeeecc-Ccccc--ccCCCchhhhhhHh---hcccCCCcEE---EEEEE--e---eCCCCHHH
Q 025169 5 SYMDAVVEGLRAVS--AVDVDFA-SRSID--VRRPVNTKNMNDAC---NGTRGKKIYV---RLLLS--I---DRRETTEA 68 (257)
Q Consensus 5 ~y~~~~~~~~~~v~--y~E~r~~-p~~~~--~~~~~~~~~~~~~~---~a~~~~gir~---~li~~--~---~r~~~~e~ 68 (257)
.-++..+++...+. .+.+.++ ...|. .-|.|.+|+++.+. +.+++.|++. .+... . .| .+++.
T Consensus 79 ~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr-~~~~~ 157 (284)
T cd07942 79 DLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSD-TELDF 157 (284)
T ss_pred hhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCC-CCHHH
Confidence 33555555443332 3444544 22233 34677777766544 3445555431 11111 1 13 45666
Q ss_pred HHHHHHHHHhhCCCc---eEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcE
Q 025169 69 AMETVKLALEMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQR 138 (257)
Q Consensus 69 ~~~~~~~~~~~~~~~---vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~r 138 (257)
..+.++.+.+..+.+ +..+.++-.-...+|..+.+.++..++. ++++-+|+.-..+- .+...+++.|+++
T Consensus 158 l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~ 237 (284)
T cd07942 158 ALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADR 237 (284)
T ss_pred HHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCE
Confidence 677766665442211 2233333111123666777666665543 45577777644432 3445667778887
Q ss_pred Ee
Q 025169 139 IG 140 (257)
Q Consensus 139 i~ 140 (257)
+.
T Consensus 238 id 239 (284)
T cd07942 238 VE 239 (284)
T ss_pred EE
Confidence 65
No 239
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=77.42 E-value=32 Score=30.12 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=32.2
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccH
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEE 147 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~ 147 (257)
+.+..+.+..++.|+++.+|.+- ..++.+....+.|++++.++...++
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~~g~-~~~e~l~~Lk~aG~~~v~i~~E~~~ 145 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCATLGL-LDPEQAKRLKDAGLDYYNHNLDTSQ 145 (296)
T ss_pred HHHHHHHHHHHhCCCeEEecCCC-CCHHHHHHHHHcCCCEEEEcccCCH
Confidence 45666777777788888888763 3455555555678888877765443
No 240
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=77.13 E-value=47 Score=30.55 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecc-CC-CCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLS-GN-PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~-g~-~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
++++..+.++.+.+. |+-.+-+. |. +...+.+.+.++++..++.--.+++|++-. ..+.+....+.|++++.|+
T Consensus 105 s~eEI~~~a~~~~~~---Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l-t~e~l~~Lk~aGv~r~~i~ 180 (371)
T PRK09240 105 DEEEIEREMAAIKKL---GFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL-SEEEYAELVELGLDGVTVY 180 (371)
T ss_pred CHHHHHHHHHHHHhC---CCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC-CHHHHHHHHHcCCCEEEEE
Confidence 455555555544433 33333332 32 323456778888887776433456666532 3444555556899999998
Q ss_pred ccc-cHHHHHHH
Q 025169 143 CCF-EEEEWRKL 153 (257)
Q Consensus 143 ~~l-~~~~~~~l 153 (257)
... +++....+
T Consensus 181 lET~~~~~~~~i 192 (371)
T PRK09240 181 QETYNPATYAKH 192 (371)
T ss_pred EecCCHHHHHHh
Confidence 876 57666665
No 241
>PRK10425 DNase TatD; Provisional
Probab=76.86 E-value=50 Score=28.75 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=78.9
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCC-CCChhcHHHHHHHHHHcCCceeee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPT-KGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~-~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
++++++.+++.|+...++.++ +++...+..+++..|.. -..++|+.+... ....+.+..+.+.+++. .+ +=
T Consensus 17 ~~~vl~~a~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~--~~-va 88 (258)
T PRK10425 17 RDDVVARAFAAGVNGMLITGT----NLRESQQAQKLARQYPS-CWSTAGVHPHDSSQWQAATEEAIIELAAQP--EV-VA 88 (258)
T ss_pred HHHHHHHHHHCCCCEEEEeCC----CHHHHHHHHHHHHhCCC-EEEEEEeCcCccccCCHHHHHHHHHhccCC--CE-EE
Confidence 334444455667766555444 36667778888877753 234555543211 12234455555554331 11 12
Q ss_pred cCCCC--------CHh---h-----HHHHHhcCCcEEeecccccHHHHHHHhcC--CC--cEEecccccceeccccCCCc
Q 025169 119 CGEIP--------NKE---E-----IQSMLDFLPQRIGHACCFEEEEWRKLKSS--KI--PVEICLTSNIRTETISSLDI 178 (257)
Q Consensus 119 a~E~~--------~~~---~-----i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~--~i--~v~~cP~SN~~l~~~~~~~~ 178 (257)
.||.+ ... . +.-|.+++.-.+-|+....++.++.|++. +. .+.||=+.+.
T Consensus 89 IGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~~---------- 158 (258)
T PRK10425 89 IGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGTR---------- 158 (258)
T ss_pred EeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCCH----------
Confidence 45553 011 1 12233356667889998888889988863 21 3567755432
Q ss_pred ccHHHHHhcCCCEEecCCC
Q 025169 179 HHFVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 179 ~pi~~l~~~Gv~v~lgTD~ 197 (257)
.-++++++.|.-+++|..-
T Consensus 159 ~~~~~~l~~G~~~si~g~i 177 (258)
T PRK10425 159 EEMQACLARGLYIGITGWV 177 (258)
T ss_pred HHHHHHHHCCCEEEECcee
Confidence 2367889999999998753
No 242
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=76.46 E-value=65 Score=31.52 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhccc--eeeeecc-Cccccc--cCCCchhhhhhHhhc---ccCCCcEE--------EEEEE---eeCCC
Q 025169 4 RSYMDAVVEGLRAVS--AVDVDFA-SRSIDV--RRPVNTKNMNDACNG---TRGKKIYV--------RLLLS---IDRRE 64 (257)
Q Consensus 4 ~~y~~~~~~~~~~v~--y~E~r~~-p~~~~~--~~~~~~~~~~~~~~a---~~~~gir~--------~li~~---~~r~~ 64 (257)
+.-++..++++.++. .+.+.++ ...|.. -|.|.+|+++.+.++ +++.|... ..-++ +.| .
T Consensus 103 ~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r-~ 181 (564)
T TIGR00970 103 EELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSD-T 181 (564)
T ss_pred hhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCC-C
Confidence 344566677766554 4556555 233444 367788888765533 44444321 22222 223 3
Q ss_pred CHHHHHHHHHHHHhhCCC---ceEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhc
Q 025169 65 TTEAAMETVKLALEMRDL---GVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDF 134 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~---~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~l 134 (257)
+++...+.++.+.+...+ ..+-+.++-.-...+|..+...++..++. ++++.+|+.=..+- .+...+++.
T Consensus 182 d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~a 261 (564)
T TIGR00970 182 ELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLA 261 (564)
T ss_pred CHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHh
Confidence 677888888877765432 23344443222234677887777776543 45688888644432 344567778
Q ss_pred CCcEEe
Q 025169 135 LPQRIG 140 (257)
Q Consensus 135 g~~ri~ 140 (257)
|++++.
T Consensus 262 Ga~~v~ 267 (564)
T TIGR00970 262 GADRIE 267 (564)
T ss_pred CCCEEE
Confidence 988865
No 243
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=76.44 E-value=43 Score=32.47 Aligned_cols=104 Identities=11% Similarity=-0.038 Sum_probs=64.1
Q ss_pred CCCchhhhhhH---hhcccCCCcEEEEEEE-eeC--CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHH
Q 025169 33 RPVNTKNMNDA---CNGTRGKKIYVRLLLS-IDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK 106 (257)
Q Consensus 33 ~~~~~~~~~~~---~~a~~~~gir~~li~~-~~r--~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~ 106 (257)
+.+.+++++.+ ++-+++.|.++.+... +.+ +.+++...+.++.+.+...+.+.=.|..| ...|..+..+++
T Consensus 114 ~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~ 190 (526)
T TIGR00977 114 QTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITT 190 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHH
Confidence 56677777654 4556777888775443 211 24688888888877765544333334333 336778888888
Q ss_pred HHHHc-C-CceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 107 FAREQ-G-LQITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 107 ~A~~~-g-l~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
..++. + .++.+|+.=..+- .+...+++.|++++
T Consensus 191 ~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 191 KVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred HHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 77664 3 3477887644332 34456777888775
No 244
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=76.42 E-value=11 Score=33.94 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=44.2
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH---HhcCCcEEeecccc----------cHHHHHHHhcCCCcEEeccc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSM---LDFLPQRIGHACCF----------EEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~---l~lg~~ri~Hg~~l----------~~~~~~~l~~~~i~v~~cP~ 165 (257)
-.-++-++.|.+.|..-..|-.-..+.+.++-- ..+.|+.-.|+-|- -.++++..+++||++.+.|-
T Consensus 98 ~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k 177 (412)
T KOG1706|consen 98 VIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPK 177 (412)
T ss_pred hhhhhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCC
Confidence 344556777888899988886544343434311 12456665666443 24688999999999988776
Q ss_pred c
Q 025169 166 S 166 (257)
Q Consensus 166 S 166 (257)
+
T Consensus 178 ~ 178 (412)
T KOG1706|consen 178 N 178 (412)
T ss_pred C
Confidence 5
No 245
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=76.37 E-value=31 Score=30.87 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=47.9
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHh-c--CCc--EEeecccccHHHHHHHhcCCCcEEeccccc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-F--LPQ--RIGHACCFEEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~-l--g~~--ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN 167 (257)
..|++=+++|.+..+|+.+|+-.. .+.+.+.+. . ... .+.|++.-+.++++.+.+.++.+-+.+.++
T Consensus 135 ~vFekQl~LA~~~~~Pl~iH~r~a--~~d~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~ 206 (296)
T KOG3020|consen 135 TVFEKQLDLAKRLKLPLFIHCRSA--HEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSL 206 (296)
T ss_pred HHHHHHHHHHHHccCCeeeechhh--hHHHHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEecccceee
Confidence 347788899999999999998542 233333332 2 223 678999989999999999996665555543
No 246
>PRK13753 dihydropteroate synthase; Provisional
Probab=75.80 E-value=57 Score=28.91 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=43.2
Q ss_pred hcHH---HHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEee--cccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFL---PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH--ACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~---~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~H--g~~l~~~~~~~l~~~~i~v~~c 163 (257)
+++. ++++..++.+.++.+-. ..++-++.+++.|++.|-- |.. +++..+.+++.+++++++
T Consensus 60 eE~~Rv~pvI~~l~~~~~~ISIDT---~~~~va~~al~aGadiINDVsg~~-d~~~~~vva~~~~~vVlm 125 (279)
T PRK13753 60 DEIRRIAPLLDALSDQMHRVSIDS---FQPETQRYALKRGVGYLNDIQGFP-DPALYPDIAEADCRLVVM 125 (279)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEC---CCHHHHHHHHHcCCCEEEeCCCCC-chHHHHHHHHcCCCEEEE
Confidence 4566 77888887777776643 5566778899999986642 333 667778888888777654
No 247
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.70 E-value=35 Score=29.58 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=54.8
Q ss_pred ccceeeeeccCccccccCCC-chhhhhhHhhcccCCCcEEEEEEE-eeCC-----CCH-------HHHHHHHHHHHhhCC
Q 025169 16 AVSAVDVDFASRSIDVRRPV-NTKNMNDACNGTRGKKIYVRLLLS-IDRR-----ETT-------EAAMETVKLALEMRD 81 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~~~~-~~~~~~~~~~a~~~~gir~~li~~-~~r~-----~~~-------e~~~~~~~~~~~~~~ 81 (257)
.+.++|++..+..-...... .++-++.+.+..++.|+.+.-+.+ .... .++ +..++.++.+.....
T Consensus 34 G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~ 113 (283)
T PRK13209 34 GFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGI 113 (283)
T ss_pred CCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899998664210011121 133455566777888988754322 1110 111 123344455555554
Q ss_pred CceEEEeccCCCCCCC--------hhcHHHHHHHHHHcCCceeeecCCC
Q 025169 82 LGVVGIDLSGNPTKGE--------WTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 82 ~~vvg~~l~g~~~~~~--------~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
+ .+.+.........+ .+.++++.+.|+++|+.+.+|..+.
T Consensus 114 ~-~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 114 R-VIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDT 161 (283)
T ss_pred C-EEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCC
Confidence 4 33332111111111 2446778899999999999987644
No 248
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=75.40 E-value=38 Score=31.75 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=72.7
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCcee
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQIT 116 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~ 116 (257)
+|.|..+.++.+.+++...+.---+...+ ....|.++ .+.+|+-+. .....+|..+..++..|.++++.|.
T Consensus 175 ~w~i~rMl~a~d~~p~N~g~lgKGn~s~~-~~L~Eqi~-------aGa~GlKlH-EDWG~TpaaI~~~L~VAD~~DvqVa 245 (568)
T COG0804 175 PWHIARMLQAADGLPMNIGFLGKGNASNP-APLAEQIE-------AGAIGLKLH-EDWGATPAAIDTCLSVADEYDVQVA 245 (568)
T ss_pred HHHHHHHHHhhhcCceeeEEeecCCCCCc-hhHHHHHh-------hccceeEee-cccCCCHHHHHHHHhhhhhhceEEE
Confidence 46777888888888888777643333222 22222221 245677663 3456688899999999999999999
Q ss_pred eecCCCCCHhhHHHHHhcCCcEEeecccc-------cHHHHHHHhcCCCc
Q 025169 117 LHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKSSKIP 159 (257)
Q Consensus 117 ~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l-------~~~~~~~l~~~~i~ 159 (257)
+|..-......+.+.+..=..|.-|.++. -|+.++.....+|.
T Consensus 246 iHtDTLNEsGfvEdTi~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvL 295 (568)
T COG0804 246 IHTDTLNESGFVEDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVL 295 (568)
T ss_pred EeecccccccchHhHHHHhcCceeEEeeccCCCCCCccHHHHHccCCCcC
Confidence 99753322233444554334566676654 36778887777754
No 249
>PRK13404 dihydropyrimidinase; Provisional
Probab=75.05 E-value=78 Score=30.10 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCChhcHHHHHHHHHHcCCceeeecC
Q 025169 95 KGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 95 ~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
..+.+.+.++++.|+++|+++.+|+.
T Consensus 162 ~~~~~~l~~~~~~a~~~g~~V~~Hae 187 (477)
T PRK13404 162 KLDDRQILDVLAVARRHGAMVMVHAE 187 (477)
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45678899999999999999999984
No 250
>PLN02858 fructose-bisphosphate aldolase
Probab=74.44 E-value=43 Score=36.48 Aligned_cols=184 Identities=12% Similarity=0.063 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eecc
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHAC 143 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg~ 143 (257)
+.|.++..++.+++.+.+-++.+......+ .+.+...-+...|++..+||.+|.--..+.+.+..+++.|-+.+ -=|-
T Consensus 1123 n~e~~~avi~aAe~~~sPvIl~~~~~~~~~-~~~~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS 1201 (1378)
T PLN02858 1123 NLEGIEAVVAAAEAEKSPAILQVHPGALKQ-GGIPLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGS 1201 (1378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHhh-cCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCC
Confidence 467778888888887777666654432222 23343334556788899999999976666788899999887653 2233
Q ss_pred cc--------cHHHHHHHhcCCCcEEeccccc--ceec----cccCCCccc--HHHHHhc-CC---CEEecCCCCCC---
Q 025169 144 CF--------EEEEWRKLKSSKIPVEICLTSN--IRTE----TISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV--- 200 (257)
Q Consensus 144 ~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~----~~~~~~~~p--i~~l~~~-Gv---~v~lgTD~~~~--- 200 (257)
++ +.+.+++....|+.||-=...= ..-+ ......+.| ..+|.+. || -|++||==...
T Consensus 1202 ~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~ 1281 (1378)
T PLN02858 1202 HLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPAS 1281 (1378)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCC
Confidence 33 3356777788899987532210 0000 000011223 4566654 55 47777753211
Q ss_pred ---CCCChHHHHHHHHH---h-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 025169 201 ---FSTSVSREYDLAAS---A-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFD 249 (257)
Q Consensus 201 ---~~~~l~~E~~~a~~---~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~ 249 (257)
.+.++.++++.... . .|++.+++.++..+|+.=.-+..+.|..+.+.+.
T Consensus 1282 ~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~ 1343 (1378)
T PLN02858 1282 GPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALS 1343 (1378)
T ss_pred CCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHHHh
Confidence 22457777777762 1 3677888887777777766666666666665554
No 251
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=73.34 E-value=31 Score=31.56 Aligned_cols=97 Identities=8% Similarity=-0.046 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHH-HHHcC-CceeeecCCCCCHhhHHHHHhcCCcEE---
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI--- 139 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~-A~~~g-l~v~~Ha~E~~~~~~i~~~l~lg~~ri--- 139 (257)
+.+.++..++.+.+.+.+.++.+......+ ...+.+..++.. |++.. +||.+|.-=..+.+.+..++++|-+.+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiD 103 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSY-AGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMD 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhh-CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeec
Confidence 467777888888877776555543322121 234556666554 55564 899999976666788999999887653
Q ss_pred -eec------cc------ccHHHHHHHhcCCCcEEe
Q 025169 140 -GHA------CC------FEEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 140 -~Hg------~~------l~~~~~~~l~~~~i~v~~ 162 (257)
.|- .- .+.+.+++....|+.||-
T Consensus 104 gS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEa 139 (347)
T TIGR01521 104 GSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEG 139 (347)
T ss_pred CcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 221 11 134567888888988864
No 252
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.22 E-value=30 Score=31.64 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH-HHcC-CceeeecCCCCCHhhHHHHHhcCCcEE---
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQG-LQITLHCGEIPNKEEIQSMLDFLPQRI--- 139 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A-~~~g-l~v~~Ha~E~~~~~~i~~~l~lg~~ri--- 139 (257)
..+.++..++.+.+.+.+-++.+......+ ...+.+..++..+ ++.. +||.+|+-=..+.+.+..++++|-+.+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiD 105 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKY-AGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMD 105 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhh-CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec
Confidence 467777888888877776555543221111 2345566666655 4453 899999976666788899999988664
Q ss_pred -eec------------ccccHHHHHHHhcCCCcEEe
Q 025169 140 -GHA------------CCFEEEEWRKLKSSKIPVEI 162 (257)
Q Consensus 140 -~Hg------------~~l~~~~~~~l~~~~i~v~~ 162 (257)
.|. +..+.+.+++....|+.||-
T Consensus 106 gS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEa 141 (347)
T PRK09196 106 GSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEG 141 (347)
T ss_pred CCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 232 01134567888889999874
No 253
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=73.15 E-value=27 Score=31.61 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCC--hhcH-HHHHHHHHHc--CCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--WTTF-LPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~--~~~~-~~~~~~A~~~--gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
..+.++..++.+.+.+.+-++.+......+... ...+ ..+...|++. .+||.+|..=..+.+.+.++++.|-+.
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftS 111 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSS 111 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCE
Confidence 456667777777766666455543221111110 1222 2234556666 578888886555556667777766544
No 254
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=72.66 E-value=38 Score=30.68 Aligned_cols=100 Identities=9% Similarity=0.147 Sum_probs=55.8
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCC--------------CHhhHHHHHh-cCCcEE------eecccc----------c
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIP--------------NKEEIQSMLD-FLPQRI------GHACCF----------E 146 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~--------------~~~~i~~~l~-lg~~ri------~Hg~~l----------~ 146 (257)
.+..+++.+.|+..|+.|=.=.|... +|+...+.++ .|+|.+ .||.+- +
T Consensus 125 I~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld 204 (321)
T PRK07084 125 VALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLR 204 (321)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccC
Confidence 35677889999998887765443321 1333333333 477765 599874 3
Q ss_pred HHHHHHHhcC--CCcEEeccccccee-------------ccccCCCcccHHHHHhcCC-CEEecCCC
Q 025169 147 EEEWRKLKSS--KIPVEICLTSNIRT-------------ETISSLDIHHFVDLYKAQH-PLVLCTDD 197 (257)
Q Consensus 147 ~~~~~~l~~~--~i~v~~cP~SN~~l-------------~~~~~~~~~pi~~l~~~Gv-~v~lgTD~ 197 (257)
-+.++.+++. ++++++==.|.... +..-+...--+++..+.|| +|-++||-
T Consensus 205 ~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl 271 (321)
T PRK07084 205 FDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDG 271 (321)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHH
Confidence 3445555443 46666555552211 0000112334788888888 47777773
No 255
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=72.49 E-value=69 Score=28.34 Aligned_cols=187 Identities=9% Similarity=0.032 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHH-HHHHHHcC-CceeeecCCCCCHhhHHHHHhcCCcEEe-e
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRIG-H 141 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~-~~~A~~~g-l~v~~Ha~E~~~~~~i~~~l~lg~~ri~-H 141 (257)
+.+.++..++.+.+.+.+.++.+......+....+.+... ...|++.+ +||.+|..-....+.+..++..|.+.+- =
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid 104 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMID 104 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4566777888787777665555433222222223444444 44577778 9999998655456778888888876531 1
Q ss_pred ccccc--------HHHHHHHhcCCCcEEecccc-----cceeccccCCCc-cc--HHHHHh-cCCC-EE--ecCC-----
Q 025169 142 ACCFE--------EEEWRKLKSSKIPVEICLTS-----NIRTETISSLDI-HH--FVDLYK-AQHP-LV--LCTD----- 196 (257)
Q Consensus 142 g~~l~--------~~~~~~l~~~~i~v~~cP~S-----N~~l~~~~~~~~-~p--i~~l~~-~Gv~-v~--lgTD----- 196 (257)
+-.++ .+.+++....|+.++.-... ....+ ..... .| ..++.+ -|+. ++ +||=
T Consensus 105 ~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g--~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 105 GSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDE--KEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccc--cccccCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 22222 24456666778877632211 00001 00011 22 355564 5765 22 3441
Q ss_pred CCCCCCCChHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 197 DSGVFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 197 ~~~~~~~~l~~E~~~a~~~-------~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.....+.+..+++...... .|++.+++.++...|+.-.-+..+.+..+.+.+.+..+
T Consensus 183 ~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 183 GEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred CCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 1111233555555544321 26888888888888888887888888887777776653
No 256
>PRK00369 pyrC dihydroorotase; Provisional
Probab=72.43 E-value=82 Score=29.20 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCceeeecCCCC----------CH-hh---HHHHHhcCCcEEeecccc-cHHHHHHHhcCCCcEEeccccc
Q 025169 103 PALKFAREQGLQITLHCGEIP----------NK-EE---IQSMLDFLPQRIGHACCF-EEEEWRKLKSSKIPVEICLTSN 167 (257)
Q Consensus 103 ~~~~~A~~~gl~v~~Ha~E~~----------~~-~~---i~~~l~lg~~ri~Hg~~l-~~~~~~~l~~~~i~v~~cP~SN 167 (257)
..++.+.+.+.++.+|+-... +. .+ +..+..+ .-.|-+++ +.+.++..+++|+.+++||--=
T Consensus 145 ~~~~~~~~~~~~v~~HaE~~~l~~~~~~~~rp~~aE~~ai~~~~~~---~~lhi~HvSt~~~v~~ak~~gvt~Ev~pHhL 221 (392)
T PRK00369 145 ETFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWYEIAALYYVKDY---QNVHITHASNPRTVRLAKELGFTVDITPHHL 221 (392)
T ss_pred HHHHHHHHhCCEEEEeCCCHHHhhcchhcccCHHHHHHHHHHHHHh---CCEEEEECCCHHHHHHHHHCCCeEEechhHh
Confidence 455666677799999984321 00 01 1122223 12455555 4567888888999999999642
Q ss_pred ceeccccC-CC-ccc---------HHHHHhcCCCEEecCCCCCCC-------------CCChHHH----HHHHHHhCCCC
Q 025169 168 IRTETISS-LD-IHH---------FVDLYKAQHPLVLCTDDSGVF-------------STSVSRE----YDLAASAFSLG 219 (257)
Q Consensus 168 ~~l~~~~~-~~-~~p---------i~~l~~~Gv~v~lgTD~~~~~-------------~~~l~~E----~~~a~~~~~ls 219 (257)
+....... +. .+| +.+.++. |. +|+||-.+.. |..-.+. +.......+++
T Consensus 222 ~l~~~~~~~~k~~PPLR~~~dr~aL~~~l~~-id-~i~SDHaP~~~~~K~~~f~~~~~Gi~GlE~~lpll~~~v~~~~ls 299 (392)
T PRK00369 222 LVNGEKDCLTKVNPPIRDINERLWLLQALSE-VD-AIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFIYTLVSKGILS 299 (392)
T ss_pred eeccCCCCceEEeCCCCCHHHHHHHHHHHHh-CC-EEEeCCCCCCHHHccCCHhhCCCCCeeHHHHHHHHHHHHHcCCCC
Confidence 22111100 01 123 2233334 55 7999964321 1100111 11122224699
Q ss_pred HHHHHHH-HHHHHHHcCCCh
Q 025169 220 RREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 220 ~~~v~~~-~~n~~~~~~~~~ 238 (257)
.++++++ +.|.++...++.
T Consensus 300 l~~~v~~~s~nPA~ilgl~~ 319 (392)
T PRK00369 300 IDRAVELISTNPARILGIPY 319 (392)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 9999987 589999998863
No 257
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=72.31 E-value=18 Score=33.95 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.2
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCC
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
.+.+.+.++++.+++.|+++++| .|.
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H-~E~ 183 (443)
T TIGR03178 158 VDDWQLYKGMRELARLGQLLLVH-AEN 183 (443)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEe-ccC
Confidence 45678999999999999999999 454
No 258
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=71.92 E-value=56 Score=29.95 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecc-C-CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLS-G-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~-g-~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
++++..+.++.+.++. +..+-+. | .+...+.+.+.++++..++..-.++++++- ...+......+.|++++-|+
T Consensus 104 s~eEI~~~a~~~~~~G---v~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~-lt~e~~~~Lk~aGv~r~~i~ 179 (366)
T TIGR02351 104 NEEEIEREIEAIKKSG---FKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP-LNEEEYKKLVEAGLDGVTVY 179 (366)
T ss_pred CHHHHHHHHHHHHhCC---CCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc-CCHHHHHHHHHcCCCEEEEE
Confidence 4566666666555443 2222222 3 233345677888888887754334455542 23455555556899999888
Q ss_pred ccc-cHHHHHHH
Q 025169 143 CCF-EEEEWRKL 153 (257)
Q Consensus 143 ~~l-~~~~~~~l 153 (257)
... +++..+.+
T Consensus 180 lET~~~~~y~~i 191 (366)
T TIGR02351 180 QETYNEKKYKKH 191 (366)
T ss_pred eecCCHHHHHhc
Confidence 765 46555554
No 259
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.47 E-value=75 Score=28.81 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=66.8
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc---CCceeeecCCCCCHhhHHHH
Q 025169 55 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 55 ~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~---gl~v~~Ha~E~~~~~~i~~~ 131 (257)
.++....--.+.+++..+.+++++.....++-+.+.+++... .....+.++.|+++ |+.+..-|.. ++...+..
T Consensus 138 ~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~l-lpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~~a~~l 214 (326)
T PRK11840 138 TYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTL-YPDMVETLKATEILVKEGFQVMVYCSD--DPIAAKRL 214 (326)
T ss_pred EECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHH
Confidence 444444434567888888888888766568888887865543 34567777888887 9998777754 35555666
Q ss_pred HhcCCc-------EEeecccc-cHHHHHHHhcC
Q 025169 132 LDFLPQ-------RIGHACCF-EEEEWRKLKSS 156 (257)
Q Consensus 132 l~lg~~-------ri~Hg~~l-~~~~~~~l~~~ 156 (257)
.++|+. -||-|.-+ +|+-++.+.+.
T Consensus 215 ~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 215 EDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred HhcCCEEEeeccccccCCCCCCCHHHHHHHHHc
Confidence 667763 35555444 78888888776
No 260
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=71.44 E-value=37 Score=31.10 Aligned_cols=188 Identities=10% Similarity=-0.002 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH-HHc-CCceeeecCCCCCHhhHHHHHhcCCcEE-ee
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI-GH 141 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A-~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~H 141 (257)
..+.++..++.+.+.+.+-++.+......+ ...+.+..++..+ ++. ++||.+|.-=..+.+.+..+++.|-+.+ -=
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~-~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiD 105 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKY-AGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMD 105 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhh-CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEe
Confidence 567778888888887777555543322122 2345666666654 455 4899999976666788899999887653 11
Q ss_pred cccc---------------cHHHHHHHhcCCCcEEecccc---cce------ecc--c-----cCCCccc--HHHHHhc-
Q 025169 142 ACCF---------------EEEEWRKLKSSKIPVEICLTS---NIR------TET--I-----SSLDIHH--FVDLYKA- 187 (257)
Q Consensus 142 g~~l---------------~~~~~~~l~~~~i~v~~cP~S---N~~------l~~--~-----~~~~~~p--i~~l~~~- 187 (257)
|-++ +.+.+++....|+.||-=... +-. -+. . ...-+.| ..+|.+.
T Consensus 106 gS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~T 185 (347)
T PRK13399 106 GSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRT 185 (347)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHH
Confidence 2222 335678888899998753321 000 000 0 0011122 3344433
Q ss_pred CC---CEEecCCCCCC----------CCCChHHHHHHHHH-h-------CC---------------------CCHHHHHH
Q 025169 188 QH---PLVLCTDDSGV----------FSTSVSREYDLAAS-A-------FS---------------------LGRREMFQ 225 (257)
Q Consensus 188 Gv---~v~lgTD~~~~----------~~~~l~~E~~~a~~-~-------~~---------------------ls~~~v~~ 225 (257)
|| -|++||==... .+.++.+|++.... . .| ++.+++.+
T Consensus 186 gvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~k 265 (347)
T PRK13399 186 GVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQR 265 (347)
T ss_pred CcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHH
Confidence 44 35555542111 11234455544431 1 12 33677888
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 226 LAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 226 ~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+..+|+.=.-++.+.|..+.+.+.+..+
T Consensus 266 ai~~GI~KINi~Tdl~~a~~~~~~~~~~ 293 (347)
T PRK13399 266 GIKHGVRKVNIDTDIRLAMTGAIRKVLA 293 (347)
T ss_pred HHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 8888887777788888777777766554
No 261
>PRK03739 2-isopropylmalate synthase; Validated
Probab=71.23 E-value=80 Score=30.84 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhccc--eeeeecc-Cccccc--cCCCchhhhhhHh---hcccCCC-------cEEEEEE-EeeCCCCHHH
Q 025169 5 SYMDAVVEGLRAVS--AVDVDFA-SRSIDV--RRPVNTKNMNDAC---NGTRGKK-------IYVRLLL-SIDRRETTEA 68 (257)
Q Consensus 5 ~y~~~~~~~~~~v~--y~E~r~~-p~~~~~--~~~~~~~~~~~~~---~a~~~~g-------ir~~li~-~~~r~~~~e~ 68 (257)
.-+++.++++..+. .+.+.++ ...|.. -|.|.+|+++.+. +.+++.| +++.+.. ...| .+++.
T Consensus 108 ~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR-~d~~~ 186 (552)
T PRK03739 108 HLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTG-TELDF 186 (552)
T ss_pred hHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCC-CCHHH
Confidence 34556666655443 3445544 233333 3677788776544 3334434 2222221 1233 46777
Q ss_pred HHHHHHHHHhhCCCc---eEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcE
Q 025169 69 AMETVKLALEMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQR 138 (257)
Q Consensus 69 ~~~~~~~~~~~~~~~---vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~r 138 (257)
..+.++.+....+.+ .+-+.++-.-...+|..+...++..++. ++++.+|+.=..+- .+...+++.|+++
T Consensus 187 l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~ 266 (552)
T PRK03739 187 ALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADR 266 (552)
T ss_pred HHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCE
Confidence 788877765532222 2234443222234677887777776554 57888888644432 3445677788887
Q ss_pred Ee
Q 025169 139 IG 140 (257)
Q Consensus 139 i~ 140 (257)
+.
T Consensus 267 v~ 268 (552)
T PRK03739 267 VE 268 (552)
T ss_pred EE
Confidence 54
No 262
>TIGR03586 PseI pseudaminic acid synthase.
Probab=70.96 E-value=68 Score=29.10 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=18.8
Q ss_pred CChhcHHHHHHHHHHcCCceeeec
Q 025169 96 GEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.+.+.++++++.+++.|+.+..=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stp 97 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSP 97 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEcc
Confidence 356777889999999999987644
No 263
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=70.87 E-value=87 Score=28.81 Aligned_cols=189 Identities=9% Similarity=-0.014 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCC---------------hhcHHHH-HHHHHHcCCceeeecCCCCCH--h
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE---------------WTTFLPA-LKFAREQGLQITLHCGEIPNK--E 126 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~---------------~~~~~~~-~~~A~~~gl~v~~Ha~E~~~~--~ 126 (257)
+.+.++..++.+.+.+.+.++.+......+... ...+... ...|++..+||.+|.-=..+. +
T Consensus 36 n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~~ 115 (357)
T TIGR01520 36 SSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLLP 115 (357)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchH
Confidence 466677777877777776555543321111110 1113333 445677899999998655444 4
Q ss_pred hHHHHHhcC-----------CcEE-eecccc--------cHHHHHHHhcCCCcEEeccccc--ceec---cc---cCCCc
Q 025169 127 EIQSMLDFL-----------PQRI-GHACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTE---TI---SSLDI 178 (257)
Q Consensus 127 ~i~~~l~lg-----------~~ri-~Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~---~~---~~~~~ 178 (257)
.+..++++| .+.+ -=|-++ +.+.+++....|+.||-=...= ..-+ .. ..+-+
T Consensus 116 ~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yT 195 (357)
T TIGR01520 116 WVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYT 195 (357)
T ss_pred HHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCC
Confidence 467777765 3321 112222 2356777888899987533210 0000 00 01122
Q ss_pred cc--HHHHHhc-----CC---CEEecCCCCCC------CCCChHHHHHHHH---------------H--hCCCCHHHHHH
Q 025169 179 HH--FVDLYKA-----QH---PLVLCTDDSGV------FSTSVSREYDLAA---------------S--AFSLGRREMFQ 225 (257)
Q Consensus 179 ~p--i~~l~~~-----Gv---~v~lgTD~~~~------~~~~l~~E~~~a~---------------~--~~~ls~~~v~~ 225 (257)
.| ..++.+. || -|++||==... .+.+++++++... . ..|++.+++.+
T Consensus 196 dPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~k 275 (357)
T TIGR01520 196 QPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKE 275 (357)
T ss_pred CHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHH
Confidence 34 4555542 33 58888864333 1236667764221 0 13678899999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 226 LAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 226 ~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+..+|+.=.-++.+.|..+.+.+.+.++
T Consensus 276 ai~~GI~KINi~Tdl~~A~~~a~~~~~~ 303 (357)
T TIGR01520 276 ALSYGVVKMNIDTDTQWAYWEGILNYYK 303 (357)
T ss_pred HHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 9999998888888988888888887664
No 264
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=70.85 E-value=13 Score=32.05 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=74.3
Q ss_pred HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCC-ChhcHHHHHHHHHHcCCceeeecCC
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAREQGLQITLHCGE 121 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~-~~~~~~~~~~~A~~~gl~v~~Ha~E 121 (257)
.++.+.+.|+...+..+. +++......+++.++......++|+.+..... +.+.+..+-++ ....-+-..=.||
T Consensus 19 ~~~~~~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l-~~~~~~~~~aIGE 93 (255)
T PF01026_consen 19 VLERAREAGVSAIIIVST----DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEEL-INLNRPKVVAIGE 93 (255)
T ss_dssp HHHHHHHTTEEEEEEEES----SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHH-HHHTSTTEEEEEE
T ss_pred HHHHHHHcCCCEEEEcCC----CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHH-HHhccccceeeee
Confidence 334455567766554333 34555667676766544334555554311111 23334444343 2222221222344
Q ss_pred CC--------CHh---------hHHHHHhcCCcEEeecccccHHHHHHHhcCCC----cEEecccccceeccccCCCccc
Q 025169 122 IP--------NKE---------EIQSMLDFLPQRIGHACCFEEEEWRKLKSSKI----PVEICLTSNIRTETISSLDIHH 180 (257)
Q Consensus 122 ~~--------~~~---------~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i----~v~~cP~SN~~l~~~~~~~~~p 180 (257)
.+ ... .+.-|.+++...+-|+....++.++.+++.+. .+.||=+.+. .-
T Consensus 94 iGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~----------~~ 163 (255)
T PF01026_consen 94 IGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCFSGSP----------EE 163 (255)
T ss_dssp EEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT--S-H----------HH
T ss_pred eccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHHhccccceeEEEecCCCCH----------HH
Confidence 42 011 12233446777889999999999999998873 3666643322 23
Q ss_pred HHHHHhcCCCEEecCC
Q 025169 181 FVDLYKAQHPLVLCTD 196 (257)
Q Consensus 181 i~~l~~~Gv~v~lgTD 196 (257)
+.++++.|+-++++..
T Consensus 164 ~~~~~~~g~~~S~~~~ 179 (255)
T PF01026_consen 164 AKKFLDLGCYFSFSGA 179 (255)
T ss_dssp HHHHHHTTEEEEEEGG
T ss_pred HHHHHhcCceEEeccc
Confidence 6788899999999877
No 265
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=70.00 E-value=21 Score=30.20 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhH
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI 128 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i 128 (257)
.++++..+.+.....|...+--|+-++|.|....++.+.++++.+++.|+.+.++..-..+.+.+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~ 83 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKL 83 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 46776665555444443211124556776776667777899999999999998887543333333
No 266
>PLN02389 biotin synthase
Probab=69.82 E-value=56 Score=30.24 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=39.5
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccH----------------HHHHHHhcCCCc
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEE----------------EEWRKLKSSKIP 159 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~----------------~~~~~l~~~~i~ 159 (257)
.+.+.++++..++.++.+....|-. ..+.+....+.|.+++.|.+..++ +.++.+++.|+.
T Consensus 152 ~e~i~eiir~ik~~~l~i~~s~G~l-~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~ 228 (379)
T PLN02389 152 FNQILEYVKEIRGMGMEVCCTLGML-EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGIS 228 (379)
T ss_pred HHHHHHHHHHHhcCCcEEEECCCCC-CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCe
Confidence 3566677777787788777666643 344555555689999887654222 346777777765
No 267
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.51 E-value=51 Score=28.41 Aligned_cols=112 Identities=8% Similarity=-0.030 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhccceeeeeccCccccc---cCCCchhhhhhHhhcccCCCcEEEEEE-EeeC-----CCCH-------H
Q 025169 4 RSYMDAVVEGLRAVSAVDVDFASRSIDV---RRPVNTKNMNDACNGTRGKKIYVRLLL-SIDR-----RETT-------E 67 (257)
Q Consensus 4 ~~y~~~~~~~~~~v~y~E~r~~p~~~~~---~~~~~~~~~~~~~~a~~~~gir~~li~-~~~r-----~~~~-------e 67 (257)
++.++.+-+. .+.++|+.+.+. +.. .+.+ ++-++...+..++.||.+.-+. +... ..++ +
T Consensus 19 ~e~~~~~~~~--G~~~iEl~~~~~-~~~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~ 94 (284)
T PRK13210 19 EERLVFAKEL--GFDFVEMSVDES-DERLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALE 94 (284)
T ss_pred HHHHHHHHHc--CCCeEEEecCCc-ccccccccCC-HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHH
Confidence 3344444333 588999987642 111 1112 2235556677888998875432 2111 1122 2
Q ss_pred HHHHHHHHHHhhCCCceEEEeccCCCCC-CC-------hhcHHHHHHHHHHcCCceeeecC
Q 025169 68 AAMETVKLALEMRDLGVVGIDLSGNPTK-GE-------WTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 68 ~~~~~~~~~~~~~~~~vvg~~l~g~~~~-~~-------~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
..++.++.+.....+.+ .+........ .+ .+.++++.+.|+++|+.+.+|..
T Consensus 95 ~~~~~i~~a~~lG~~~v-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 95 IMKKAIRLAQDLGIRTI-QLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHhCCCEE-EECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 22344455555554433 3221100000 01 13477788889999999999874
No 268
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=67.09 E-value=25 Score=30.47 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=29.9
Q ss_pred CChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE--EeecccccHHHHHHHhcCCCcE
Q 025169 96 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR--IGHACCFEEEEWRKLKSSKIPV 160 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r--i~Hg~~l~~~~~~~l~~~~i~v 160 (257)
.+.+.+.++++.|++.|+.+..=. .+.+++....++++.. |+-+-..+-.+++.++++|.++
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stp---fd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPv 116 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTP---FDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPV 116 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE----SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-E
T ss_pred CCHHHHHHHHHHHHHcCCEEEECC---CCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcE
Confidence 466778888888888888776654 2344444444455543 2322222333444444444443
No 269
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.86 E-value=71 Score=27.68 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccc
Q 025169 100 TFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 100 ~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~S 166 (257)
.+.++++..++. ++++.+-. ..++-+..+++.|++-|---... +++.++++++.|.++++++..
T Consensus 63 rl~~~v~~l~~~~~~piSIDT---~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 63 RVIPVLRALAGEPDVPISVDT---FNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHHHHHHHhcCCCeEEEeC---CcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcC
Confidence 366777777665 88886654 55677788898887665433332 367788899999999888864
No 270
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=66.52 E-value=82 Score=29.47 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCC-----CHhhHHHHHhcCCcE
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP-----NKEEIQSMLDFLPQR 138 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~-----~~~~i~~~l~lg~~r 138 (257)
.+++++.+.++....+.....-++.++|.+...-.+.+.++++.+++.|+++++ ..++ .++.+...+.+|.+.
T Consensus 54 ~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI--~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHL--GYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEE--eCCCCcccCCHHHHHHHHHcCCCE
Confidence 467888777777666542212333444432222335788999999999988655 2133 233455555677776
Q ss_pred E
Q 025169 139 I 139 (257)
Q Consensus 139 i 139 (257)
+
T Consensus 132 v 132 (404)
T TIGR03278 132 V 132 (404)
T ss_pred E
Confidence 5
No 271
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=66.26 E-value=23 Score=32.45 Aligned_cols=189 Identities=11% Similarity=-0.034 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCC--hh-------------cHHHHHHHHHHcCCceeeecCCCCC--Hhh
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--WT-------------TFLPALKFAREQGLQITLHCGEIPN--KEE 127 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~--~~-------------~~~~~~~~A~~~gl~v~~Ha~E~~~--~~~ 127 (257)
..+.++..++.+.+.+.+-++.+......+... .+ ...-+...|++..+||.+|.-=... .+.
T Consensus 30 n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~~ 109 (350)
T PRK09197 30 GTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLPW 109 (350)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchHH
Confidence 467777788888877777566554322121111 12 2233455678889999999965544 445
Q ss_pred HHHHHhcC-----------CcEE-eecccc--------cHHHHHHHhcCCCcEEecccccc--eec----cc--cCCCcc
Q 025169 128 IQSMLDFL-----------PQRI-GHACCF--------EEEEWRKLKSSKIPVEICLTSNI--RTE----TI--SSLDIH 179 (257)
Q Consensus 128 i~~~l~lg-----------~~ri-~Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN~--~l~----~~--~~~~~~ 179 (257)
+..++++| .+.+ -=|-++ +.+.+++....|++||--...=- --+ .. ...-+.
T Consensus 110 i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~Td 189 (350)
T PRK09197 110 IDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQ 189 (350)
T ss_pred HHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCC
Confidence 66666666 3332 112122 23557888889999975332200 000 00 011233
Q ss_pred c--HHHHHhc-CC-------CEEecCCCCCCC------CCChHHHHHHHHH---------h-------CCCCHHHHHHHH
Q 025169 180 H--FVDLYKA-QH-------PLVLCTDDSGVF------STSVSREYDLAAS---------A-------FSLGRREMFQLA 227 (257)
Q Consensus 180 p--i~~l~~~-Gv-------~v~lgTD~~~~~------~~~l~~E~~~a~~---------~-------~~ls~~~v~~~~ 227 (257)
| ..+|.+. |+ -|++||==...- +.++.++++.... . .|++.+++.++.
T Consensus 190 PeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai 269 (350)
T PRK09197 190 PEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAV 269 (350)
T ss_pred HHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHH
Confidence 4 4556654 64 577887633322 2356677766651 1 368889999888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 228 KSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 228 ~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
.+|+.=.-+..+.+..+.+.+.+.+.
T Consensus 270 ~~GI~KINi~T~l~~a~~~~~~~~~~ 295 (350)
T PRK09197 270 SYGVVKMNIDTDTQWAFWRGVLDYYF 295 (350)
T ss_pred HCCCeeEEeCcHHHHHHHHHHHHHHH
Confidence 88888888888888888877777653
No 272
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.19 E-value=49 Score=29.45 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEeccCCCCCCCh-hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDL-GVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~~~-~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
+|+++.+.++. -.-+ .-++++-.+..|...| -.|..+-+..+..++|+.+|-|-..+.+.++.++..|..-|--+
T Consensus 157 ~peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 157 DPKECQELVEK---TGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CHHHHHHHHHH---HCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 56666665542 2222 1345554433443333 23555555566679999999875556677888888888766555
Q ss_pred ccc
Q 025169 143 CCF 145 (257)
Q Consensus 143 ~~l 145 (257)
+.+
T Consensus 234 T~l 236 (286)
T PRK08610 234 TEN 236 (286)
T ss_pred cHH
Confidence 544
No 273
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=65.84 E-value=41 Score=30.65 Aligned_cols=189 Identities=13% Similarity=0.008 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCC-CCCC-----C---------hhcHHH-HHHHHHHcCCceeeecCCCC--CHh
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGN-PTKG-----E---------WTTFLP-ALKFAREQGLQITLHCGEIP--NKE 126 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~-~~~~-----~---------~~~~~~-~~~~A~~~gl~v~~Ha~E~~--~~~ 126 (257)
+.+.++..++.+.+.+.+.++.+...+. .+.. + .+.+.. +...|++.++||.+|.-=.. ..+
T Consensus 22 n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~~e 101 (340)
T cd00453 22 GTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLP 101 (340)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCCHH
Confidence 3455666667666666655555433111 1111 0 233433 34567888999999996555 567
Q ss_pred hHHHHHhcC-----------CcEE-eecccc--------cHHHHHHHhcCCCcEEecccccc--eec---c-c--cCCCc
Q 025169 127 EIQSMLDFL-----------PQRI-GHACCF--------EEEEWRKLKSSKIPVEICLTSNI--RTE---T-I--SSLDI 178 (257)
Q Consensus 127 ~i~~~l~lg-----------~~ri-~Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN~--~l~---~-~--~~~~~ 178 (257)
.+..+++.| .+.+ -=|-.+ +.+.+++....|+.||.=...=- .-+ . . ..+-+
T Consensus 102 ~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT 181 (340)
T cd00453 102 WIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYT 181 (340)
T ss_pred HHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCC
Confidence 888999988 3321 111122 23567888889999975322100 000 0 0 01112
Q ss_pred cc--HHHHHh-cC-------CCEEecCCCCCC------CCCChHHHHHHHHH---------h-------CCCCHHHHHHH
Q 025169 179 HH--FVDLYK-AQ-------HPLVLCTDDSGV------FSTSVSREYDLAAS---------A-------FSLGRREMFQL 226 (257)
Q Consensus 179 ~p--i~~l~~-~G-------v~v~lgTD~~~~------~~~~l~~E~~~a~~---------~-------~~ls~~~v~~~ 226 (257)
.| ..++.+ -| +-|++||==... .+.++.++++.... . .|++.+++.++
T Consensus 182 ~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~a 261 (340)
T cd00453 182 QPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDS 261 (340)
T ss_pred CHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHH
Confidence 23 455554 46 348888752221 23477788877661 1 26788888888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 227 AKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 227 ~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
..+|+.=.-++.+.|..+.+.+.+..+
T Consensus 262 i~~Gi~KiNi~Te~~~A~~~~~~~~~~ 288 (340)
T cd00453 262 VSYGVVKMNIDTDTQWATWEGVLNYYK 288 (340)
T ss_pred HHcCCeEEEcccHHHHHHHHHHHHHHH
Confidence 888888888888888877777766553
No 274
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.55 E-value=83 Score=28.68 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=71.6
Q ss_pred eeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEee---C----CC---CH----HHHHHHHHHHHhhCCC-ceEE
Q 025169 22 VDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSID---R----RE---TT----EAAMETVKLALEMRDL-GVVG 86 (257)
Q Consensus 22 ~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~---r----~~---~~----e~~~~~~~~~~~~~~~-~vvg 86 (257)
+|+.|-.. --++.+..+++++++.++-+|+..-.- + .. .+ +.+.+.++.+.++.-. -++.
T Consensus 97 iRINPGNi-----g~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS 171 (346)
T TIGR00612 97 VRINPGNI-----GFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS 171 (346)
T ss_pred EEECCCCC-----CCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 66676432 236788888999888888777765321 1 11 12 3344555555544322 2233
Q ss_pred EeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCH--hhHHHHHhcC------C-cEEeecccccH-HHH----HH
Q 025169 87 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLDFL------P-QRIGHACCFEE-EEW----RK 152 (257)
Q Consensus 87 ~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i~~~l~lg------~-~ri~Hg~~l~~-~~~----~~ 152 (257)
+- . ...+..++.--.++++.+.|+|+=.-|.... .-++.++.+| - |.|-=...-+| +++ ++
T Consensus 172 ~K--s---Sdv~~~i~ayr~la~~~dyPLHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~I 246 (346)
T TIGR00612 172 MK--A---SDVAETVAAYRLLAERSDYPLHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEI 246 (346)
T ss_pred EE--c---CCHHHHHHHHHHHHhhCCCCceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHH
Confidence 22 1 1123344433444667788887766676532 2344444432 1 33211111122 222 22
Q ss_pred -----HhcCCCcEEecccccce
Q 025169 153 -----LKSSKIPVEICLTSNIR 169 (257)
Q Consensus 153 -----l~~~~i~v~~cP~SN~~ 169 (257)
|.++|+.++.|||....
T Consensus 247 L~slglr~~g~~iiSCPtCGR~ 268 (346)
T TIGR00612 247 LQSLGLRARGVEIVACPSCGRT 268 (346)
T ss_pred HHHcCCCcCCCeEEECCCCCCc
Confidence 34678999999998643
No 275
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=65.49 E-value=82 Score=27.34 Aligned_cols=66 Identities=14% Similarity=-0.029 Sum_probs=44.4
Q ss_pred hhcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhc--CCcEEeecccc-----cHHHHHHHhcCCCcEEecccc
Q 025169 98 WTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF--LPQRIGHACCF-----EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 98 ~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~l--g~~ri~Hg~~l-----~~~~~~~l~~~~i~v~~cP~S 166 (257)
.+++.++....++. ++|+.+-. ..++.+..+++. |++-|---... .++.++.+++.|.+++..+..
T Consensus 55 ~ee~~r~v~~i~~~~~~piSIDT---~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 55 VSAMKWLLNLLATEPTVPLMLDS---TNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHHHHHHHHHhcCCcEEeeC---CcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 46677776666665 88887754 456667778876 87665432222 245568889999998887764
No 276
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=65.49 E-value=92 Score=27.09 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=44.9
Q ss_pred HHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCCcEEeeccc--ccHHHHHHHhcCCCcEEecccc
Q 025169 101 FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC--FEEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 101 ~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~--l~~~~~~~l~~~~i~v~~cP~S 166 (257)
+.++++..++. ++++.+-. ..++.+..+++.|++-|---.. .+++.++++++.|.+++.++..
T Consensus 64 l~~~v~~i~~~~~~plSIDT---~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~ 129 (257)
T cd00739 64 VIPVLEALRGELDVLISVDT---FRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMR 129 (257)
T ss_pred HHHHHHHHHhcCCCcEEEeC---CCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCC
Confidence 44456766665 88887654 5567778899889876653322 2467788899999999988763
No 277
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=65.34 E-value=1.1e+02 Score=28.06 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHcC--Cce-eeecCCCCCHhhHHHHH-hcCC-cEE-eecccccHHHHHHHhcCCCcEEecccccceeccc
Q 025169 100 TFLPALKFAREQG--LQI-TLHCGEIPNKEEIQSML-DFLP-QRI-GHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 173 (257)
Q Consensus 100 ~~~~~~~~A~~~g--l~v-~~Ha~E~~~~~~i~~~l-~lg~-~ri-~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~ 173 (257)
.+.+++...++.+ +.+ ..|+|.......+++.+ ..+. +++ -.|..-+++..++++...+.+-+.|+..--+
T Consensus 247 ~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~--- 323 (407)
T cd04946 247 LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGL--- 323 (407)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccc---
Confidence 3444444444433 343 35677553334444444 2333 233 2444334556677777677666666543221
Q ss_pred cCCCcccHHHHHhcCCCEEecCCCCC
Q 025169 174 SSLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 174 ~~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
+ ..+-+.+..|+|| |+||.++
T Consensus 324 ---p-~~llEAma~G~PV-Ias~vgg 344 (407)
T cd04946 324 ---P-VSIMEAMSFGIPV-IATNVGG 344 (407)
T ss_pred ---c-HHHHHHHHcCCCE-EeCCCCC
Confidence 2 2477899999998 7788654
No 278
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=64.05 E-value=87 Score=26.28 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=80.6
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
.+.|..+++.+.+.++.+.+ .|+-.+-+.- .++.-++.+.++.++++-++.+=+|--...+.+..+++.|++-
T Consensus 14 ~v~r~~~~~~~~~~~~a~~~---gGi~~iEvt~----~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~f 86 (206)
T PRK09140 14 AILRGITPDEALAHVGALIE---AGFRAIEIPL----NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRL 86 (206)
T ss_pred EEEeCCCHHHHHHHHHHHHH---CCCCEEEEeC----CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCE
Confidence 45666667776666665443 2222222221 1122334444445556655666665444556677777777755
Q ss_pred EeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC-CCCCChHHHHHHHHH---
Q 025169 139 IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG-VFSTSVSREYDLAAS--- 214 (257)
Q Consensus 139 i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~-~~~~~l~~E~~~a~~--- 214 (257)
.|.-+.+++.++...+.++.+. |..+ ...-+.+..+.|..+.-- -|. ..+.+...++.....
T Consensus 87 -ivsp~~~~~v~~~~~~~~~~~~--~G~~---------t~~E~~~A~~~Gad~vk~--Fpa~~~G~~~l~~l~~~~~~~i 152 (206)
T PRK09140 87 -IVTPNTDPEVIRRAVALGMVVM--PGVA---------TPTEAFAALRAGAQALKL--FPASQLGPAGIKALRAVLPPDV 152 (206)
T ss_pred -EECCCCCHHHHHHHHHCCCcEE--cccC---------CHHHHHHHHHcCCCEEEE--CCCCCCCHHHHHHHHhhcCCCC
Confidence 4555567777777777776643 2210 001245566667654321 111 122334444443331
Q ss_pred ----hCCCCHHHHHHHHHHHHHHcC
Q 025169 215 ----AFSLGRREMFQLAKSAVKFIF 235 (257)
Q Consensus 215 ----~~~ls~~~v~~~~~n~~~~~~ 235 (257)
.-|++.+.+.+....|+....
T Consensus 153 pvvaiGGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 153 PVFAVGGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred eEEEECCCCHHHHHHHHHCCCeEEE
Confidence 126888888887766655544
No 279
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=63.97 E-value=1.2e+02 Score=27.95 Aligned_cols=36 Identities=6% Similarity=0.023 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCCh
Q 025169 203 TSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFANG 238 (257)
Q Consensus 203 ~~l~~E~~~a~~~~~ls~~~v~~~-~~n~~~~~~~~~ 238 (257)
.+|.++++.+....++++.+++++ +.|+++..++++
T Consensus 311 l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~ 347 (382)
T PRK11170 311 LTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVDK 347 (382)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 488899999988889999999998 579999999864
No 280
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=63.46 E-value=1.1e+02 Score=27.10 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=65.5
Q ss_pred ccceeeeecc-Cccc--cccCCCchhhhhh---HhhcccCCCcEEEEEEE-eeCCCCH-----HHHHHHHHHHHhhCCCc
Q 025169 16 AVSAVDVDFA-SRSI--DVRRPVNTKNMND---ACNGTRGKKIYVRLLLS-IDRRETT-----EAAMETVKLALEMRDLG 83 (257)
Q Consensus 16 ~v~y~E~r~~-p~~~--~~~~~~~~~~~~~---~~~a~~~~gir~~li~~-~~r~~~~-----e~~~~~~~~~~~~~~~~ 83 (257)
.+..+.+.++ ...| .+-|.|.+|+++. +++.+++.|+++++.+. ..|. +. +.+.+..+.+.....+.
T Consensus 87 g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~-d~~~~v~~~~~~~~~~~~~~G~~~ 165 (279)
T cd07947 87 GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRA-DIYGFVLPFVNKLMKLSKESGIPV 165 (279)
T ss_pred CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCC-CcccchHHHHHHHHHHHHHCCCCE
Confidence 4555555554 2233 3446778887765 44556777888877663 3332 22 23445555444343331
Q ss_pred eEE-EeccC--CCC--CCChhcHHHHHHHHHHc-CC---ceeeecCCCCCH--hhHHHHHhcCCcEE
Q 025169 84 VVG-IDLSG--NPT--KGEWTTFLPALKFAREQ-GL---QITLHCGEIPNK--EEIQSMLDFLPQRI 139 (257)
Q Consensus 84 vvg-~~l~g--~~~--~~~~~~~~~~~~~A~~~-gl---~v~~Ha~E~~~~--~~i~~~l~lg~~ri 139 (257)
.+. .|..| .|. ...|+....+++..++. ++ ++.+|+.-+.+- .+...+++.|++++
T Consensus 166 ~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~v 232 (279)
T cd07947 166 KIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWV 232 (279)
T ss_pred EEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 121 12333 221 12246677777776653 44 477777655443 35567777898775
No 281
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=63.18 E-value=1e+02 Score=26.70 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=55.0
Q ss_pred ccceeeeeccCccccccCCCc-hhhhhhHhhcccCCCcEEEEEE-EeeC-----CCCHH-------HHHHHHHHHHhhCC
Q 025169 16 AVSAVDVDFASRSIDVRRPVN-TKNMNDACNGTRGKKIYVRLLL-SIDR-----RETTE-------AAMETVKLALEMRD 81 (257)
Q Consensus 16 ~v~y~E~r~~p~~~~~~~~~~-~~~~~~~~~a~~~~gir~~li~-~~~r-----~~~~e-------~~~~~~~~~~~~~~ 81 (257)
.+.++|+...+.......... +.-++...+..++.|+++..+. ...+ ..+++ ...+.++.+..+..
T Consensus 29 G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~ 108 (279)
T TIGR00542 29 GFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGI 108 (279)
T ss_pred CCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 588999976643211122222 2334555567788888875432 1111 11222 12344455555554
Q ss_pred CceEEEeccCCCCC-CC-------hhcHHHHHHHHHHcCCceeeecCCC
Q 025169 82 LGVVGIDLSGNPTK-GE-------WTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 82 ~~vvg~~l~g~~~~-~~-------~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
+ .+.+........ .+ .+.++++.+.|+++|+.+.+|.-++
T Consensus 109 ~-~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~ 156 (279)
T TIGR00542 109 R-TIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDT 156 (279)
T ss_pred C-EEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 4 333321111111 11 1456778889999999999997543
No 282
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=63.17 E-value=1.2e+02 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhhCCCce-EEEeccCCCCCCChhcHHHHHHHHHHc
Q 025169 65 TTEAAMETVKLALEMRDLGV-VGIDLSGNPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~v-vg~~l~g~~~~~~~~~~~~~~~~A~~~ 111 (257)
++|...+.++...+++++++ .-+|-.|.|..+| .+..+++.++++
T Consensus 142 d~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~ 187 (414)
T COG2100 142 DPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYP--HLVDLVQALKEH 187 (414)
T ss_pred cHHHHHHHHHHHHhhhCCCeEEEecCCCCCccch--hHHHHHHHHhcC
Confidence 35666777777777776654 2334344444433 355666666654
No 283
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=62.81 E-value=1.1e+02 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=16.4
Q ss_pred CCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 112 GLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 112 gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
++|+.+|=|-..+.+.+..+++.|+.-+.=+
T Consensus 202 ~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 202 GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3666666543334455555666665554433
No 284
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=62.35 E-value=1.1e+02 Score=28.29 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=67.0
Q ss_pred EeeCCCCHHHHHHHHHHHHhhC----CC--ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHH
Q 025169 59 SIDRRETTEAAMETVKLALEMR----DL--GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML 132 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~----~~--~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l 132 (257)
.+.+..+.++..+..+....|+ +. .+-|+.+.. .+.+|+.|+++++.+.+.|+|+.+-. .+++-++.++
T Consensus 102 dv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~--~Sgdpekfa~ave~v~~~~~pv~l~s---~dpevmkaaL 176 (467)
T COG1456 102 DVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRN--RSGDPEKFAEAVEKVAEAGLPVILCS---FDPEVMKAAL 176 (467)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEe--cCCCHHHHHHHHHHHHhcCCcEEEEe---CCHHHHHHHH
Confidence 3444455555544444444443 22 133444432 34578999999999999999988765 5677777777
Q ss_pred hcCCc---EEeeccccc-HHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 133 DFLPQ---RIGHACCFE-EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 133 ~lg~~---ri~Hg~~l~-~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+.-.+ .+--+.--+ .+..++..+.++++++.--.++.. +. .=..++.++|+.
T Consensus 177 ev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~-----lk-~la~~~~~~Gi~ 232 (467)
T COG1456 177 EVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDD-----LK-NLAVTYAQAGIK 232 (467)
T ss_pred HHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccCCHHH-----HH-HHHHHHHHcCCc
Confidence 63111 121111112 245666778888887543222211 11 113567788874
No 285
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=62.28 E-value=57 Score=29.76 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEE-EeccCCCC-CCChhcHHHHHHHHHHcCCceeeecCCCC------CHhhHHHHHhcCC
Q 025169 65 TTEAAMETVKLALEMRDLGVVG-IDLSGNPT-KGEWTTFLPALKFAREQGLQITLHCGEIP------NKEEIQSMLDFLP 136 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg-~~l~g~~~-~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~------~~~~i~~~l~lg~ 136 (257)
+.++-...++.+.++.-..+.. +.. +.+. ..-...|++++..|+++|+.+.+-+.=+- ....+...-++|.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~-~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLI-PEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeeccc-CCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 3455677888888876654433 222 2221 11235688999999999999999874110 0122333445676
Q ss_pred --cEEeecccccHHHHHHHhcCCCcEEeccc
Q 025169 137 --QRIGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 137 --~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
-|+.||+. -+++..|...+..++++++
T Consensus 93 ~glRlD~gfS--~eei~~ms~~~lkieLN~S 121 (360)
T COG3589 93 DGLRLDYGFS--GEEIAEMSKNPLKIELNAS 121 (360)
T ss_pred hheeecccCC--HHHHHHHhcCCeEEEEchh
Confidence 47888864 4677777777788887764
No 286
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=62.27 E-value=57 Score=28.93 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=38.6
Q ss_pred EEEeccCCCCCCCh-hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc
Q 025169 85 VGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 145 (257)
Q Consensus 85 vg~~l~g~~~~~~~-~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l 145 (257)
+++|-++..+...| -.|..+-+..+..++|+.+|-|-..+.+.++.++..|..-|--++.+
T Consensus 172 vaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 233 (282)
T TIGR01858 172 VAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVATEL 233 (282)
T ss_pred cccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 44444433343333 33444545555669999999876666677888888888776666554
No 287
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=62.19 E-value=92 Score=29.84 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhccc--eeeeeccC-ccccc--cCCCchhhhhhHhh---cccCCC-cEEEEEEE-eeCCCCHHHHHHHHH
Q 025169 5 SYMDAVVEGLRAVS--AVDVDFAS-RSIDV--RRPVNTKNMNDACN---GTRGKK-IYVRLLLS-IDRRETTEAAMETVK 74 (257)
Q Consensus 5 ~y~~~~~~~~~~v~--y~E~r~~p-~~~~~--~~~~~~~~~~~~~~---a~~~~g-ir~~li~~-~~r~~~~e~~~~~~~ 74 (257)
-=+++.+|+++.-+ -+....+. ..|.. -+.|.+++|+.+++ -++..| +.+.+... ..| .+.+.+.++.+
T Consensus 133 ~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r-se~~fl~eI~~ 211 (560)
T KOG2367|consen 133 DDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR-SELEFLLEILG 211 (560)
T ss_pred HHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc-CcHHHHHHHHH
Confidence 34556666666431 34444442 22222 46788888887663 355566 66666543 334 45677778877
Q ss_pred HHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcEEee
Q 025169 75 LALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIGH 141 (257)
Q Consensus 75 ~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~H 141 (257)
.+.+.+.. . +++...-...+|.++-++++..+.+ .+-+.+|+.-..+- .+....+..|++++.-
T Consensus 212 aV~Kag~~-t--vnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~ 282 (560)
T KOG2367|consen 212 AVIKAGVT-T--VNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEV 282 (560)
T ss_pred HHHHhCCc-c--ccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEE
Confidence 77665443 2 3332211123567777777776652 56677787533321 1222334457776643
No 288
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=62.19 E-value=59 Score=29.76 Aligned_cols=189 Identities=8% Similarity=-0.030 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCCh--h------------cHHHH-HHHHHHcCCceeeecCCCCC-----
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--T------------TFLPA-LKFAREQGLQITLHCGEIPN----- 124 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~--~------------~~~~~-~~~A~~~gl~v~~Ha~E~~~----- 124 (257)
..+.++..++.+.+.+.+.++.+......+.... + .+... ...|++.++||.+|.-=...
T Consensus 25 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~~ 104 (345)
T cd00946 25 SSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLLPW 104 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccchh
Confidence 4666777778777777765555443222211111 0 23333 44677889999999865544
Q ss_pred HhhH--------HHHHhcCCcEE-eecccc--------cHHHHHHHhcCCCcEEeccccc--ceeccc------cCCCcc
Q 025169 125 KEEI--------QSMLDFLPQRI-GHACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTETI------SSLDIH 179 (257)
Q Consensus 125 ~~~i--------~~~l~lg~~ri-~Hg~~l--------~~~~~~~l~~~~i~v~~cP~SN--~~l~~~------~~~~~~ 179 (257)
.+.+ ..+++.|.+.+ -=|-.+ +.+.+++....|+.||-=...= .--+.. ..+-+.
T Consensus 105 ~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTd 184 (345)
T cd00946 105 FDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQ 184 (345)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCC
Confidence 2222 33335566543 112222 3456788889999997532210 000000 011123
Q ss_pred c--HHHHHhc-----CC---CEEecCCCCCC------CCCChHHHHHHH----H------H-------hCCCCHHHHHHH
Q 025169 180 H--FVDLYKA-----QH---PLVLCTDDSGV------FSTSVSREYDLA----A------S-------AFSLGRREMFQL 226 (257)
Q Consensus 180 p--i~~l~~~-----Gv---~v~lgTD~~~~------~~~~l~~E~~~a----~------~-------~~~ls~~~v~~~ 226 (257)
| ..++.++ |+ -|++||==... .+.++.++++.. . . ..|++.+++.++
T Consensus 185 PeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~ka 264 (345)
T cd00946 185 PEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREA 264 (345)
T ss_pred HHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHH
Confidence 3 5566665 44 47787752222 123566666322 1 0 136788888888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 227 AKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 227 ~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
..+|+.=.-++.+.+..+.+.+.+.++
T Consensus 265 i~~GI~KiNi~T~l~~a~~~~i~~~~~ 291 (345)
T cd00946 265 ISYGVVKMNIDTDTQWAYWEGVRNYYL 291 (345)
T ss_pred HHcCCeeEEeCcHHHHHHHHHHHHHHh
Confidence 888888777888888777777777654
No 289
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=62.04 E-value=70 Score=28.44 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEeccCCCCCCCh-hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDL-GVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~~~-~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
+|+++.+.++.. .-+ .-+++|-.+..+...| -.|..+-+..+..++|+.+|-|-..+.+.++.++.+|..-|--+
T Consensus 157 ~peeA~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 157 DPAECKHLVEAT---GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CHHHHHHHHHHh---CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 566665555432 222 2345554433443323 33555555566679999999875556677888888888776655
Q ss_pred ccc
Q 025169 143 CCF 145 (257)
Q Consensus 143 ~~l 145 (257)
+.+
T Consensus 234 T~l 236 (285)
T PRK07709 234 TEN 236 (285)
T ss_pred hHH
Confidence 544
No 290
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=61.78 E-value=51 Score=29.68 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=63.7
Q ss_pred hhcccC--CCcEEEEEEEeeCCC---CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeee
Q 025169 44 CNGTRG--KKIYVRLLLSIDRRE---TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 44 ~~a~~~--~gir~~li~~~~r~~---~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
++..++ ..+.+-+.+++.++. +.+...+.+....+ ...+.++++-+....+....++.+....-..-+-+..-
T Consensus 180 l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~--~~~~~~IGvNC~~~~~~~~~~~~L~~~~~~~~llvYPN 257 (317)
T KOG1579|consen 180 LELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKD--GINLLGIGVNCVSPNFVEPLLKELMAKLTKIPLLVYPN 257 (317)
T ss_pred HHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhcc--CCceEEEEeccCCchhccHHHHHHhhccCCCeEEEecC
Confidence 344444 456777777777631 22223333332221 11277888877655555555665552222222334444
Q ss_pred cCCCCCH----------------hhHHHHHhcCCcEEeecccccHHHHHHHhcC
Q 025169 119 CGEIPNK----------------EEIQSMLDFLPQRIGHACCFEEEEWRKLKSS 156 (257)
Q Consensus 119 a~E~~~~----------------~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~ 156 (257)
.||..+. ..+..+..+|+..||-|+..+|.+++.++++
T Consensus 258 sGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~ 311 (317)
T KOG1579|consen 258 SGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEA 311 (317)
T ss_pred CCCCCccccCcccCCCcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHH
Confidence 5655421 2234677789999999999999999988764
No 291
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=61.76 E-value=1e+02 Score=26.44 Aligned_cols=125 Identities=14% Similarity=0.052 Sum_probs=77.9
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhc-CCcEEeec------ccccHHHHHHHhcCCCcEEecccccce
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF-LPQRIGHA------CCFEEEEWRKLKSSKIPVEICLTSNIR 169 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l-g~~ri~Hg------~~l~~~~~~~l~~~~i~v~~cP~SN~~ 169 (257)
++...+...+.-+..---+. .+..+..-.+.+.+. .+|.|.|= ..++-..+++++++++.+++.-.. +.
T Consensus 62 s~~~~r~~~~kfr~~~dlI~---V~~~~lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~-ll 137 (229)
T COG1603 62 SPSQLRRLVKKFRSKVDLIA---VEPGSLKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRP-LL 137 (229)
T ss_pred ChHHHHHHHHhhhcceeEEE---EccCcHHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehHH-hh
Confidence 56677777666554322233 344455666777765 47888882 124557899999999999975432 21
Q ss_pred eccccCCCc--------ccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHH
Q 025169 170 TETISSLDI--------HHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLA 227 (257)
Q Consensus 170 l~~~~~~~~--------~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~ 227 (257)
-.. ++.. .-++.-.+.|+|+.++||.......--..++...++.+|+...+...+.
T Consensus 138 ~~~--g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~~lG~e~~ea~~~~ 201 (229)
T COG1603 138 RSS--GYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAKVLGLEDDEAKKSL 201 (229)
T ss_pred ccc--hhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHHHhCCCHHHHHHHH
Confidence 111 0011 1123334569999999997665654334566666677999999988764
No 292
>PRK14847 hypothetical protein; Provisional
Probab=61.48 E-value=1.3e+02 Score=27.42 Aligned_cols=108 Identities=8% Similarity=-0.009 Sum_probs=58.3
Q ss_pred cCCCchhhhhhHh---hcccCCCc-------EEEEEE-EeeCCCCHHHHHHHHHHHHhh-CCC--ceEEEeccCCCCCCC
Q 025169 32 RRPVNTKNMNDAC---NGTRGKKI-------YVRLLL-SIDRRETTEAAMETVKLALEM-RDL--GVVGIDLSGNPTKGE 97 (257)
Q Consensus 32 ~~~~~~~~~~~~~---~a~~~~gi-------r~~li~-~~~r~~~~e~~~~~~~~~~~~-~~~--~vvg~~l~g~~~~~~ 97 (257)
-|.+.+++++.+. +-+++.|. .+.+.. ...| .+++...+..+.+... ... +..-+.++-.-...+
T Consensus 142 l~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasR-ad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~ 220 (333)
T PRK14847 142 FGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSL-AELDFAREVCDAVSAIWGPTPQRKMIINLPATVESST 220 (333)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCC-CCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCC
Confidence 3677888876554 33445533 333332 2334 4677777777765443 221 111233321111235
Q ss_pred hhcHHHHHHHHHHc-----CCceeeecCCCCCH--hhHHHHHhcCCcEEe
Q 025169 98 WTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 140 (257)
Q Consensus 98 ~~~~~~~~~~A~~~-----gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~ 140 (257)
|..+...++..++. ++++-+|+.-..+- .+...+++.|++++.
T Consensus 221 P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 221 ANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIE 270 (333)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 66666666555443 57888888755442 344567778998865
No 293
>PRK15452 putative protease; Provisional
Probab=61.41 E-value=1.2e+02 Score=28.82 Aligned_cols=120 Identities=10% Similarity=0.065 Sum_probs=61.4
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+.++++-+.+.|+++.+.+ ++-...++.....+.......-++-|+-+ ++ +. ++..+++..-.+.+|+
T Consensus 48 l~eav~~ah~~g~kvyvt~--n~i~~e~el~~~~~~l~~l~~~gvDgvIV-~d-----~G----~l~~~ke~~p~l~ih~ 115 (443)
T PRK15452 48 LALGINEAHALGKKFYVVV--NIAPHNAKLKTFIRDLEPVIAMKPDALIM-SD-----PG----LIMMVREHFPEMPIHL 115 (443)
T ss_pred HHHHHHHHHHcCCEEEEEe--cCcCCHHHHHHHHHHHHHHHhCCCCEEEE-cC-----HH----HHHHHHHhCCCCeEEE
Confidence 5555655677787776643 33111222222222222222212333322 21 11 2455666543445566
Q ss_pred CCCC---CHhhHHHHHhcCCcEEeecccccHHHHHHHhcC--CCcEE-------------ecccccceec
Q 025169 120 GEIP---NKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSS--KIPVE-------------ICLTSNIRTE 171 (257)
Q Consensus 120 ~E~~---~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~--~i~v~-------------~cP~SN~~l~ 171 (257)
+-.. +...+.-..++|++|+.=..-++-++|+.|+++ ++.++ .|+.|+...+
T Consensus 116 stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVHGalc~m~Sg~Clls~~~~~ 185 (443)
T PRK15452 116 SVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVHGALCMAYSGRCLLSGYINK 185 (443)
T ss_pred EecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEEccchheeeCcchHHHHhhc
Confidence 4222 233444444589999877777787888888744 45443 3888887643
No 294
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=61.40 E-value=99 Score=26.04 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=78.1
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
.+.|..+++++.+..+...+-.=+ ++=+.+. ++.-+..+-+..++++ .+.+=+|--.+.+.++.+++.|++-
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~-~iEit~~------t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~F 83 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLR-VLEVTLR------TPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQF 83 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCC-EEEEeCC------CccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCE
Confidence 456666777776666654432111 2222221 2222333333333443 3555555445567777888888876
Q ss_pred EeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCE---EecCCCCCCCC-CChHHHHHHHHH
Q 025169 139 IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPL---VLCTDDSGVFS-TSVSREYDLAAS 214 (257)
Q Consensus 139 i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v---~lgTD~~~~~~-~~l~~E~~~a~~ 214 (257)
|. .-.++++.++..+++|+++ .|. .. ...-+...++.|..+ -.+. ..+ .+..+.++--.-
T Consensus 84 iv-sP~~~~~v~~~~~~~~i~~--iPG------~~---TptEi~~A~~~Ga~~vKlFPA~----~~GG~~yikal~~plp 147 (204)
T TIGR01182 84 IV-SPGLTPELAKHAQDHGIPI--IPG------VA---TPSEIMLALELGITALKLFPAE----VSGGVKMLKALAGPFP 147 (204)
T ss_pred EE-CCCCCHHHHHHHHHcCCcE--ECC------CC---CHHHHHHHHHCCCCEEEECCch----hcCCHHHHHHHhccCC
Confidence 53 1234778888888888764 352 11 011266777777543 2211 111 233333332111
Q ss_pred ------hCCCCHHHHHHHHHHHHHHcCC
Q 025169 215 ------AFSLGRREMFQLAKSAVKFIFA 236 (257)
Q Consensus 215 ------~~~ls~~~v~~~~~n~~~~~~~ 236 (257)
.-|++.+.+.+....|+.+..+
T Consensus 148 ~i~~~ptGGV~~~N~~~~l~aGa~~vg~ 175 (204)
T TIGR01182 148 QVRFCPTGGINLANVRDYLAAPNVACGG 175 (204)
T ss_pred CCcEEecCCCCHHHHHHHHhCCCEEEEE
Confidence 1377887777776666665543
No 295
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=61.02 E-value=1.1e+02 Score=26.41 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhCCCceE-EEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC--CCCCH-hhHHHHHhcCCcE-Eeecc
Q 025169 69 AMETVKLALEMRDLGVV-GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG--EIPNK-EEIQSMLDFLPQR-IGHAC 143 (257)
Q Consensus 69 ~~~~~~~~~~~~~~~vv-g~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~--E~~~~-~~i~~~l~lg~~r-i~Hg~ 143 (257)
..+-++.+.+..-+++| | .+.. ....+.+.++++.+.|. |+.+|+|-+ +..++ +.+...+++|..| +-||-
T Consensus 75 M~~DI~~~~~lG~~GVV~G-~lt~-dg~iD~~~le~Li~aA~--gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg 150 (241)
T COG3142 75 MLEDIRLARELGVQGVVLG-ALTA-DGNIDMPRLEKLIEAAG--GLGVTFHRAFDECPDPLEALEQLIELGVERILTSGG 150 (241)
T ss_pred HHHHHHHHHHcCCCcEEEe-eecC-CCccCHHHHHHHHHHcc--CCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCC
Confidence 34555666666555543 3 2221 22345567888888765 888999954 44444 3556777899987 57886
Q ss_pred ccc-----HHHHHHHhcCCCcEEecccccc
Q 025169 144 CFE-----EEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 144 ~l~-----~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
..+ +...+++...+=.+.+-|.+-+
T Consensus 151 ~~sa~eg~~~l~~li~~a~gri~Im~GaGV 180 (241)
T COG3142 151 KASALEGLDLLKRLIEQAKGRIIIMAGAGV 180 (241)
T ss_pred cCchhhhHHHHHHHHHHhcCCEEEEeCCCC
Confidence 553 3345555566555666666533
No 296
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=60.61 E-value=1e+02 Score=28.38 Aligned_cols=172 Identities=14% Similarity=0.081 Sum_probs=82.6
Q ss_pred eeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEee---C----CC---CH----HHHHHHHHHHHhhCCC-ceEE
Q 025169 22 VDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSID---R----RE---TT----EAAMETVKLALEMRDL-GVVG 86 (257)
Q Consensus 22 ~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~---r----~~---~~----e~~~~~~~~~~~~~~~-~vvg 86 (257)
+|+.|-.. .+.++.+..+++++++.++-+|+..-.- + .. .+ +.+.+.++.+.++.-+ -++.
T Consensus 105 iRINPGNi----g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS 180 (360)
T PRK00366 105 LRINPGNI----GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS 180 (360)
T ss_pred EEECCCCC----CchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 57777533 2336788888899888888777765321 1 11 12 3334444544443222 1222
Q ss_pred EeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCH--hhHHHHHhcC------C-cEEeecccccH-HHH------
Q 025169 87 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLDFL------P-QRIGHACCFEE-EEW------ 150 (257)
Q Consensus 87 ~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i~~~l~lg------~-~ri~Hg~~l~~-~~~------ 150 (257)
+- . ...+..++.--.+|++.+.|+|+=.-|.... ..++.++.+| - |.|-=...-+| +++
T Consensus 181 ~K--s---S~v~~~i~ayrlla~~~dyPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~I 255 (360)
T PRK00366 181 VK--A---SDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEI 255 (360)
T ss_pred EE--c---CCHHHHHHHHHHHHhcCCCCceecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 21 1 1122334444444666788887766676532 2344444322 1 32211111122 222
Q ss_pred -HH--HhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC
Q 025169 151 -RK--LKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS 202 (257)
Q Consensus 151 -~~--l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~ 202 (257)
+- |.++|+.+..||+.-....-...+...--.++...-.|+.++-=+...|+
T Consensus 256 L~slglr~~g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNg 310 (360)
T PRK00366 256 LQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNG 310 (360)
T ss_pred HHHcCCccCCCeEEECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 22 34678999999995332111000011011233344556666666654454
No 297
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=59.78 E-value=1.6e+02 Score=28.08 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=22.1
Q ss_pred CCCChhcHHHHHHHHHHc----C--CceeeecCCCCCHhhHHHHHhcCCcEE
Q 025169 94 TKGEWTTFLPALKFAREQ----G--LQITLHCGEIPNKEEIQSMLDFLPQRI 139 (257)
Q Consensus 94 ~~~~~~~~~~~~~~A~~~----g--l~v~~Ha~E~~~~~~i~~~l~lg~~ri 139 (257)
...+.+.+.++++..++. | ..+++.++.. ..+..+...+.|++++
T Consensus 144 ~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l-t~eey~~LkeaGv~~~ 194 (469)
T PRK09613 144 PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT-TVENYKKLKEAGIGTY 194 (469)
T ss_pred CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecC-CHHHHHHHHHcCCCEE
Confidence 344556666666666552 2 1355555432 2333344444566654
No 298
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=59.46 E-value=1.5e+02 Score=29.79 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe------ecccc-------------------------
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG------HACCF------------------------- 145 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~------Hg~~l------------------------- 145 (257)
+++.++.+++.|++.|+-+-+=+ .+.+++..+++.|++.|| +-...
T Consensus 145 ~~~~l~~l~~~a~~lGme~LvEv---h~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~ 221 (695)
T PRK13802 145 DDAQLKHLLDLAHELGMTVLVET---HTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVF 221 (695)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 45789999999999998765544 346677777777766553 11111
Q ss_pred cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC-CChHHHHHHHHHhCC--CCHHH
Q 025169 146 EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFS--LGRRE 222 (257)
Q Consensus 146 ~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-~~l~~E~~~a~~~~~--ls~~~ 222 (257)
+++++..+++.|+--.+.-+|=|+.. + ...-+++|..+|-.+--+-|-|.+.+ ...+.+ || +-++.
T Consensus 222 ~~~d~~~l~~~G~davLIGeslm~~~---d-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~-------~gg~~~pe~ 290 (695)
T PRK13802 222 GAVEVEDYARAGADAVLVGEGVATAD---D-HELAVERLVKAGARVKASETTPLSEHQGPYWGQ-------FGGRYVPEA 290 (695)
T ss_pred CHHHHHHHHHCCCCEEEECHHhhCCC---C-HHHHHHHHHhccccccccCCCCcccCCCCCcCC-------cCCEeCCHH
Confidence 34555555555555444444433211 1 01125666666666655544443332 122222 22 33444
Q ss_pred HHHH---HHHHHHHcCCChHHHHHHHHHH
Q 025169 223 MFQL---AKSAVKFIFANGRVKEDLKEIF 248 (257)
Q Consensus 223 v~~~---~~n~~~~~~~~~~~k~~l~~~~ 248 (257)
+... ...++....-+++.++++...+
T Consensus 291 l~~~~~~l~~~~~~~~~~~~f~~e~~~~~ 319 (695)
T PRK13802 291 LITALDELERVYTQAKADPEFHKELATLN 319 (695)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4332 2456666666766666555444
No 299
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=59.16 E-value=77 Score=29.39 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhhC----CCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee----ecCCCCCH-hhHHHHHhcC
Q 025169 65 TTEAAMETVKLALEMR----DLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL----HCGEIPNK-EEIQSMLDFL 135 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~----~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~----Ha~E~~~~-~~i~~~l~lg 135 (257)
+.++..+....++.-. ..|++-+.+. ..+..+..+++..++.+++++. |..++... +...++++.|
T Consensus 169 ~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g-----~~~~~l~~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~~g 243 (389)
T TIGR01975 169 TVEHLTNMAAEARVGGLLGGKPGIVNFHVG-----DSKRALQPIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAKKG 243 (389)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcEEEEEeC-----CchhhHHHHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHHhC
Confidence 4555555555554432 3356666653 2446788999999998887654 55443211 1122333322
Q ss_pred ----------CcEEeecccccHHHHHHHhcCCCcE
Q 025169 136 ----------PQRIGHACCFEEEEWRKLKSSKIPV 160 (257)
Q Consensus 136 ----------~~ri~Hg~~l~~~~~~~l~~~~i~v 160 (257)
+..+.|+.+...+.++.+.+.|+++
T Consensus 244 g~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~ 278 (389)
T TIGR01975 244 GTIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPL 278 (389)
T ss_pred CcEEEeCCCCccchhccccChHHHHHHHHHcCCCc
Confidence 1234566666667889999999875
No 300
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=59.03 E-value=85 Score=26.60 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=67.7
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHHh-cCC-cE-EeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLD-FLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l~-lg~-~r-i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.++++...+.+..+.++. |...........+. ++. +. .-+|. .++..++++...+ .++|+..- .
T Consensus 205 ~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~~d~--~i~ps~~e---~-- 275 (353)
T cd03811 205 DTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGF--QSNPYPYLKAADL--FVLSSRYE---G-- 275 (353)
T ss_pred HHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecc--cCCHHHHHHhCCE--EEeCcccC---C--
Confidence 345555555555433444443 33222333333332 343 22 23343 3345677777654 45675431 1
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHh
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE-IFDLAEK 253 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~-~~~~~~~ 253 (257)
++ ..+.+.+..|+|| |+||.++.. .+..+.......-.-+.+++. ...+.+.....+++.+.++.+ ..+...+
T Consensus 276 -~~-~~~~Ea~~~G~Pv-I~~~~~~~~--e~i~~~~~g~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 349 (353)
T cd03811 276 -FP-NVLLEAMALGTPV-VATDCPGPR--EILEDGENGLLVPVGDEAALA-AAALALLDLLLDPELRERLAAAARERVAR 349 (353)
T ss_pred -CC-cHHHHHHHhCCCE-EEcCCCChH--HHhcCCCceEEECCCCHHHHH-HHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 12 3578999999997 567765321 111111000000011223332 234455666666666666665 6666666
Q ss_pred hcC
Q 025169 254 KLD 256 (257)
Q Consensus 254 ~~~ 256 (257)
+|.
T Consensus 350 ~~~ 352 (353)
T cd03811 350 EYS 352 (353)
T ss_pred Hhc
Confidence 653
No 301
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=58.91 E-value=27 Score=33.18 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=50.5
Q ss_pred hcccCCCcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 45 NGTRGKKIYVRLLLSIDR--RETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 45 ~a~~~~gir~~li~~~~r--~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++++-+|++.+....... ..+++...+.++. ....+ +|| .+|..+..+.+.++++.+.|+++|+++|+-++
T Consensus 172 Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~---~t~~g~vV~--~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA 245 (460)
T COG0076 172 KAARYLGLGLRRVPTVPTDYRIDVDALEEAIDE---NTIGGVVVG--TAGTTDTGSIDDIEELADIAEEYGIWLHVDAA 245 (460)
T ss_pred HHHHHhCCCceeEEeccCccccCHHHHHHHHHh---hccCceEEE--EecCCCCCccCCHHHHHHHHHHcCCcEEEEcc
Confidence 677778888877776652 3466666665543 22223 444 46766677778899999999999999998875
No 302
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=58.18 E-value=1.4e+02 Score=26.69 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
.+++..++..+.+... ++|||+.++--|. |-|+....+++.-.+. .-+.+-.|=....+.....+ +| +|.+
T Consensus 97 ApvevLre~ye~aL~~--~~VVGLsIgTRPD-Clpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~i----NR-gHd~ 167 (312)
T COG1242 97 APVEVLREMYEQALSE--AGVVGLSIGTRPD-CLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRI----NR-GHDF 167 (312)
T ss_pred CcHHHHHHHHHHHhCc--CCeeEEeecCCCC-CCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHH----hc-ccch
Confidence 3566667777766543 4599988765443 4444444444333332 55555544111111111111 22 5555
Q ss_pred cccHHHHHHHhcCCCcE
Q 025169 144 CFEEEEWRKLKSSKIPV 160 (257)
Q Consensus 144 ~l~~~~~~~l~~~~i~v 160 (257)
..-.+-+..++++||.|
T Consensus 168 ~~y~dav~r~rkrgIkv 184 (312)
T COG1242 168 ACYVDAVKRLRKRGIKV 184 (312)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 44445556666666654
No 303
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=57.05 E-value=1.5e+02 Score=26.89 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=26.0
Q ss_pred ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCC
Q 025169 83 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
|+.+|...+.. ..+...+.++++.+++.|.++.+|+ |.
T Consensus 105 G~~~~k~~~~~-~~~~~~l~~~~~~~~~~g~~v~~H~-E~ 142 (374)
T cd01317 105 GAVGFSDDGKP-IQDAELLRRALEYAAMLDLPIIVHP-ED 142 (374)
T ss_pred CcEEEEcCCcC-CCCHHHHHHHHHHHHhcCCeEEEec-CC
Confidence 45565432211 1345678889999999999999998 43
No 304
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=56.95 E-value=1.1e+02 Score=25.95 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=52.3
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
.+.|..+++++....+... +.|+-.+-+. -.++.-++.+...+++.. .+.+=+|---+++.+++++..|++-
T Consensus 17 ~Vlr~~~~e~a~~~a~Ali---~gGi~~IEIT----l~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~f 88 (211)
T COG0800 17 PVIRGDDVEEALPLAKALI---EGGIPAIEIT----LRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQF 88 (211)
T ss_pred EEEEeCCHHHHHHHHHHHH---HcCCCeEEEe----cCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCE
Confidence 3445556666655554333 2233333221 113344555555566666 6666666555666677777777765
Q ss_pred EeecccccHHHHHHHhcCCCcEEeccc
Q 025169 139 IGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 139 i~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
+. .-.++++.++...+++++ +||.
T Consensus 89 iV-sP~~~~ev~~~a~~~~ip--~~PG 112 (211)
T COG0800 89 IV-SPGLNPEVAKAANRYGIP--YIPG 112 (211)
T ss_pred EE-CCCCCHHHHHHHHhCCCc--ccCC
Confidence 43 223467777777777766 3564
No 305
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=56.71 E-value=1.4e+02 Score=26.43 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
|..+-+..+..++|+.+|=|-..+.+.++.++.+|..-|--++
T Consensus 191 ~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 191 FERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 3333333344466666665544344555556666655444343
No 306
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=56.38 E-value=1.1e+02 Score=28.00 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHH-HcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAR-EQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~-~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
++++..+..+.+.+......+ +..+|-.....++.+.++++..+ +.|+.+.+-.|.. ..+...+..+.|+++..|-.
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c-~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l-~~eq~~~L~~aGvd~ynhNL 162 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFC-MGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGML-TEEQAEKLADAGVDRYNHNL 162 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEE-EEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCC-CHHHHHHHHHcChhheeccc
Confidence 345555555555544422221 11223212245566777777777 7899999999854 45666677778999999965
Q ss_pred cccH----------------HHHHHHhcCCCcEEecccc
Q 025169 144 CFEE----------------EEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 144 ~l~~----------------~~~~~l~~~~i~v~~cP~S 166 (257)
-.++ +.++.+++.|+. +|-..
T Consensus 163 eTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~--vcsGg 199 (335)
T COG0502 163 ETSPEFYENIITTRTYEDRLNTLENVREAGIE--VCSGG 199 (335)
T ss_pred ccCHHHHcccCCCCCHHHHHHHHHHHHHcCCc--cccce
Confidence 4333 346777787765 45443
No 307
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=56.23 E-value=91 Score=28.34 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
++++..+.++.+.+..-. .+.+. +|.....+.+.+.++++..++..-.+++|+
T Consensus 80 ~~eeI~~~a~~~~~~G~~-~v~l~-~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGAT-EVHIV-GGLHPNLPFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred CHHHHHHHHHHHHHCCCc-EEEEe-cCCCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 566666655544332221 22322 233223455677888888877653456664
No 308
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=55.94 E-value=1.3e+02 Score=28.36 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhhC-CCceEEEeccCCCCCCChhcHHHHHHHHHHc--CCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 63 RETTEAAMETVKLALEMR-DLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 63 ~~~~e~~~~~~~~~~~~~-~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~--gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
..+++++.+.++....+. .-.+++|.-.|.| ...++...+.++..++. |+.+.+-..-...++.+.+.+++|.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP-Ll~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~ 136 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGDP-LANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH 136 (442)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc-ccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence 356788877776655443 2235665422444 33344444555555554 777766543222245555555666554
No 309
>PRK08185 hypothetical protein; Provisional
Probab=55.20 E-value=1.5e+02 Score=26.27 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=9.7
Q ss_pred EEeecc-cccHHHHHHHhcCCC
Q 025169 138 RIGHAC-CFEEEEWRKLKSSKI 158 (257)
Q Consensus 138 ri~Hg~-~l~~~~~~~l~~~~i 158 (257)
..-||- .+++++++...+.||
T Consensus 201 LVlHGgsg~~~e~~~~ai~~GI 222 (283)
T PRK08185 201 LVLHGGSANPDAEIAESVQLGV 222 (283)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 344443 234455555555554
No 310
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=54.65 E-value=69 Score=28.50 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=39.2
Q ss_pred EEEeccCCCCCCChh--cHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc
Q 025169 85 VGIDLSGNPTKGEWT--TFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 145 (257)
Q Consensus 85 vg~~l~g~~~~~~~~--~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l 145 (257)
+++|-.+.-+...|. .|..+-+..+..++|+.+|-|-..+.+.++.++..|..-|--++.+
T Consensus 177 vaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 239 (288)
T TIGR00167 177 AAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL 239 (288)
T ss_pred eccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence 444433333333333 4566666666679999999876556677888888888766655544
No 311
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=54.58 E-value=1.4e+02 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=37.0
Q ss_pred CceEEEeccCCC-CCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHH-hcCCc-EEeecc
Q 025169 82 LGVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML-DFLPQ-RIGHAC 143 (257)
Q Consensus 82 ~~vvg~~l~g~~-~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l-~lg~~-ri~Hg~ 143 (257)
.++.|+-+.... ...+.+.+.+.++.+.++|+++.+|++.. ....+...+ .++.. .+.|+-
T Consensus 92 ~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~-~l~~l~~l~~~~~l~ivldH~G 155 (263)
T cd01311 92 AGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQVYFDAV-DLPALLPFLQKLPVAVVIDHFG 155 (263)
T ss_pred CCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEEEeCHh-hHHHHHHHHHHCCCCEEEECCC
Confidence 468887754221 11255668889999999999999998632 122333333 24333 468954
No 312
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=54.31 E-value=1e+02 Score=27.42 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEeccCCCCCCCh-hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 65 TTEAAMETVKLALEMRDL-GVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~~~-~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
+|+++.+.++.. .-+ .-+.+|-++..|...| -.|..+-+..+..++|+.+|=|-..+.+.++.++.+|..-|--+
T Consensus 156 ~peea~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 156 DPQEAKRFVELT---GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CHHHHHHHHHHh---CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 455555554422 212 1244444433443333 34555555566679999999776556678888888888776655
Q ss_pred ccc
Q 025169 143 CCF 145 (257)
Q Consensus 143 ~~l 145 (257)
+.+
T Consensus 233 T~l 235 (286)
T PRK12738 233 TEL 235 (286)
T ss_pred cHH
Confidence 544
No 313
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=53.82 E-value=1.2e+02 Score=26.29 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred HHHHHHHhhCC---CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc--cc
Q 025169 71 ETVKLALEMRD---LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC--CF 145 (257)
Q Consensus 71 ~~~~~~~~~~~---~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~--~l 145 (257)
+.++++..|.. +.++=+|+...... ..-.+.-+-+.|++-.+|+|+=-| ....++++..+..|+|-+.=.. -.
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~g-r~~~~~vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSEG-RETMLDVVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEeccccccc-chhHHHHHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 34455666643 34677777543322 222344455667888999998533 3346677788888998654333 34
Q ss_pred cHHHHHHHhcC
Q 025169 146 EEEEWRKLKSS 156 (257)
Q Consensus 146 ~~~~~~~l~~~ 156 (257)
+|+++..++++
T Consensus 109 ~p~lI~~~a~~ 119 (256)
T COG0107 109 DPELITEAADR 119 (256)
T ss_pred ChHHHHHHHHH
Confidence 89999998865
No 314
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.65 E-value=84 Score=28.00 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc--C-CceeeecCCCCCHhhH---HHHHhcCCcE
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--G-LQITLHCGEIPNKEEI---QSMLDFLPQR 138 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~--g-l~v~~Ha~E~~~~~~i---~~~l~lg~~r 138 (257)
.+...+.++...+..-++++-.+..|.-.+.|.++-+++++.+.+. | +|+.+++|.....+.+ +.+-++|++-
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~ 102 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADG 102 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCE
Confidence 3444555555544333344444444544456777777777777664 2 6678877766443333 2333356553
No 315
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=53.64 E-value=1.4e+02 Score=25.39 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC-CCCCHhhH
Q 025169 50 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG-EIPNKEEI 128 (257)
Q Consensus 50 ~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~-E~~~~~~i 128 (257)
.|+..++|+.... .+.++..+..+.+.....+. +.....-.+...+++.++-+.+.+ +-++-+.++ -....+..
T Consensus 120 ~~~~lKvIlEt~~-L~~e~i~~a~~~~~~agadf-IKTsTG~~~~gat~~~v~~m~~~~---~~~~~IKasGGIrt~~~a 194 (221)
T PRK00507 120 GGAVLKVIIETCL-LTDEEKVKACEIAKEAGADF-VKTSTGFSTGGATVEDVKLMRETV---GPRVGVKASGGIRTLEDA 194 (221)
T ss_pred CCceEEEEeecCc-CCHHHHHHHHHHHHHhCCCE-EEcCCCCCCCCCCHHHHHHHHHHh---CCCceEEeeCCcCCHHHH
Confidence 3677788877665 56667777777777666553 221111112223455555444433 333444443 12233455
Q ss_pred HHHHhcCCcEEe
Q 025169 129 QSMLDFLPQRIG 140 (257)
Q Consensus 129 ~~~l~lg~~ri~ 140 (257)
.+.+++|++|||
T Consensus 195 ~~~i~aGA~riG 206 (221)
T PRK00507 195 LAMIEAGATRLG 206 (221)
T ss_pred HHHHHcCcceEc
Confidence 566678999987
No 316
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=53.33 E-value=40 Score=29.92 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=44.3
Q ss_pred CCcEEEEEEEee-CCCCHHHHHHHHHHHHhhCCC-ceEEEeccCCC---CCCChhcHHHHHHHHHHcCCceeeec
Q 025169 50 KKIYVRLLLSID-RRETTEAAMETVKLALEMRDL-GVVGIDLSGNP---TKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 50 ~gir~~li~~~~-r~~~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~---~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.|++..-+.+-. ...+++..++.++....+... .+|-+-..... ..+|+++++++.+.|+++|+++++--
T Consensus 91 ~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 91 SGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp TTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE
T ss_pred cCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh
Confidence 678888777766 557888877776654432221 34555443222 12478999999999999999998864
No 317
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=53.24 E-value=1.5e+02 Score=25.49 Aligned_cols=97 Identities=11% Similarity=-0.067 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecc-C---CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLS-G---NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~-g---~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
.-...+.++...+..-+ .+-+|+- | +..++.+..++.+ + + ++++.+|.-=..+...+....+.|++.| -
T Consensus 24 ~~~l~~el~~l~~~g~d-~lHiDVMDG~FVPNitfGp~~i~~i-~---~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 24 WLKFNETLTTLSENQLR-LLHFDIADGQFSPFFTVGAIAIKQF-P---T-HCFKDVHLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred HHHHHHHHHHHHHCCCC-EEEEeccCCCcCCccccCHHHHHHh-C---C-CCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 33444555555544333 5566653 3 1224556555555 2 2 7899999864444456667777899875 5
Q ss_pred ecccc-c-HHHHHHHhcCCC----cEEecccccc
Q 025169 141 HACCF-E-EEEWRKLKSSKI----PVEICLTSNI 168 (257)
Q Consensus 141 Hg~~l-~-~~~~~~l~~~~i----~v~~cP~SN~ 168 (257)
|.-.. + .+.++.+++.|+ .++++|.+..
T Consensus 98 H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~ 131 (228)
T PRK08091 98 QVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPI 131 (228)
T ss_pred cccCcccHHHHHHHHHHCCCCceEEEEECCCCCH
Confidence 76532 2 367788888875 7788886543
No 318
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=52.77 E-value=1.5e+02 Score=25.37 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=46.1
Q ss_pred hCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhc
Q 025169 79 MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS 155 (257)
Q Consensus 79 ~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~ 155 (257)
+..+.+.=+|+.+.+. ....+.-+-+.++..++|+++=-| ....+.+...+.+|++++.-|..+ +|+.+..+.+
T Consensus 44 ~g~~~l~ivDLd~~~g--~~~n~~~i~~i~~~~~~pv~vgGG-irs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~ 119 (241)
T PRK14024 44 DGAEWIHLVDLDAAFG--RGSNRELLAEVVGKLDVKVELSGG-IRDDESLEAALATGCARVNIGTAALENPEWCARVIA 119 (241)
T ss_pred CCCCEEEEEeccccCC--CCccHHHHHHHHHHcCCCEEEcCC-CCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHH
Confidence 3334455667765432 222343344455666888887433 234677888888999998888765 7777766653
No 319
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.45 E-value=97 Score=25.94 Aligned_cols=96 Identities=18% Similarity=0.078 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCceEEEecc-C---CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eecc
Q 025169 69 AMETVKLALEMRDLGVVGIDLS-G---NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHAC 143 (257)
Q Consensus 69 ~~~~~~~~~~~~~~~vvg~~l~-g---~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg~ 143 (257)
..+.++...+..-+ .+-+|+- | +..++.++.++.+.+ ...+++.+|.-=..+...+....+.|++++ -|--
T Consensus 14 l~~~i~~l~~~g~d-~lHiDiMDg~fvpn~~~g~~~i~~i~~---~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 14 LEEEIKRLEEAGAD-WLHIDIMDGHFVPNLTFGPDIIKAIRK---ITDLPLDVHLMVENPERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp HHHHHHHHHHTT-S-EEEEEEEBSSSSSSB-B-HHHHHHHHT---TSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHHHcCCC-EEEEeecccccCCcccCCHHHHHHHhh---cCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc
Confidence 34455555544333 4555542 3 122345555554422 257999999854433455666667899875 5765
Q ss_pred ccc--HHHHHHHhcCCC--cEEecccccc
Q 025169 144 CFE--EEEWRKLKSSKI--PVEICLTSNI 168 (257)
Q Consensus 144 ~l~--~~~~~~l~~~~i--~v~~cP~SN~ 168 (257)
... .+.++.+++.|+ .++++|....
T Consensus 90 ~~~~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 90 ATEDPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp GTTTHHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred chhCHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 432 467888988875 5678886543
No 320
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.30 E-value=1.7e+02 Score=25.97 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 109 REQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 109 ~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
+..++|+.+|=|-..+.+.++.++..|..-|--++
T Consensus 199 ~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 199 QWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred HHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 33466666665543344555566666655444343
No 321
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=52.28 E-value=70 Score=27.96 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=33.1
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
+.+.++++++.|+++|+-+-+-+ .+.+++..++++|++.||
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEV---h~~eEl~rAl~~ga~iIG 181 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEV---HNEEELERALKLGAKIIG 181 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEE---CCHHHHHHHHhCCCCEEE
Confidence 55779999999999998766544 457788889999988875
No 322
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=51.79 E-value=48 Score=30.46 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=46.5
Q ss_pred hhcccCCCcEEEEEEEeeC-CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 44 CNGTRGKKIYVRLLLSIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 44 ~~a~~~~gir~~li~~~~r-~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
.+++.-.|+..+.|.+-.+ +.+++..++.++...+.....+.-+..+|...++..+.+.++.+.++++++.+|+-++
T Consensus 155 ~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA 232 (373)
T PF00282_consen 155 EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAA 232 (373)
T ss_dssp HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEET
T ss_pred HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccc
Confidence 3677778999777755443 2466766666665543322121222345766666778899999999999988777664
No 323
>PRK08445 hypothetical protein; Provisional
Probab=51.21 E-value=1.5e+02 Score=26.98 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
++++..+.++.+.++....+ -+. |.+...+.+.+.++++..++..-.++.|+
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i---~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a 126 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQI---LFQGGVHPKLKIEWYENLVSHIAQKYPTITIHG 126 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEE---EEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 56677776666665543323 223 34445566778888888877665566664
No 324
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=51.20 E-value=1.8e+02 Score=25.78 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
|..+-+..+..++|+.+|=|-..+.+.++.++..|..-|--++
T Consensus 185 ~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 185 FDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 3333333344456666665433334445555555554444333
No 325
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=50.67 E-value=1.3e+02 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=40.0
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhh---HHHHHhcCCcEE-eecccccHHHHHHHhcCCCcEEec
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEE---IQSMLDFLPQRI-GHACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~---i~~~l~lg~~ri-~Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
...+..+.+.|+++|..+.++..+...... +...+..+++-| -.....++..++.+++.+++++..
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~ 84 (267)
T cd06283 15 SLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLV 84 (267)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCCCEEEE
Confidence 345667777788999888887665322211 223333466643 333333455578888889988765
No 326
>PRK09875 putative hydrolase; Provisional
Probab=50.13 E-value=1.9e+02 Score=25.78 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred hhhhHhhcccCCCcEEEEE-EEee-CC-CCHHHHHHHHHHHHhhC-CCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCC
Q 025169 39 NMNDACNGTRGKKIYVRLL-LSID-RR-ETTEAAMETVKLALEMR-DLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 39 ~~~~~~~a~~~~gir~~li-~~~~-r~-~~~e~~~~~~~~~~~~~-~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
.++++-++....|+|+.+| -+-. .. ..+.+ ++.++.+.+.. ..+ -+.+... ..+ .-.+.++.+++.|+
T Consensus 105 ~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E-~kvl~Aaa~a~~~TG~pi~~Ht~--~~~----~g~e~l~il~e~Gv 177 (292)
T PRK09875 105 MVDEIEQGIDGTELKAGIIAEIGSSEGKITPLE-EKVFIAAALAHNQTGRPISTHTS--FST----MGLEQLALLQAHGV 177 (292)
T ss_pred HHHHHHHhhccCCCcccEEEEEecCCCCCCHHH-HHHHHHHHHHHHHHCCcEEEcCC--Ccc----chHHHHHHHHHcCc
Confidence 3445557778889999887 3322 21 34433 44555443332 111 1222221 111 22233667788887
Q ss_pred ----ceeeecCCCCCHhhHHHHHhcCC----cEEeeccccc-H---HHHHHHhcCC
Q 025169 114 ----QITLHCGEIPNKEEIQSMLDFLP----QRIGHACCFE-E---EEWRKLKSSK 157 (257)
Q Consensus 114 ----~v~~Ha~E~~~~~~i~~~l~lg~----~ri~Hg~~l~-~---~~~~~l~~~~ 157 (257)
-+..|+.-..+.+...+.++.|+ |.++...+.+ + +.+..|.++|
T Consensus 178 d~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~G 233 (292)
T PRK09875 178 DLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRG 233 (292)
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcC
Confidence 46689875556667777777776 5555554333 2 2355565666
No 327
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=50.04 E-value=1.5e+02 Score=24.82 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEEe-ecccccHHHHHHHhcCCCcEEec
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIG-HACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri~-Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
....+..+-+.|+++|..+.+..+...... .+..++..+++-+. -+...++..++.+.+.|++++..
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~ 84 (268)
T cd06270 14 FGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLI 84 (268)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhCCCCEEEE
Confidence 345666777888999999888776542211 12233334677543 33444555588888889988764
No 328
>PLN02826 dihydroorotate dehydrogenase
Probab=49.57 E-value=2.3e+02 Score=26.61 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhhccceeeeecc-CccccccCCCchhhhhhHhhcc----c--------CCCcEEEEEEEeeCCCCHHHH
Q 025169 3 KRSYMDAVVEGLRAVSAVDVDFA-SRSIDVRRPVNTKNMNDACNGT----R--------GKKIYVRLLLSIDRRETTEAA 69 (257)
Q Consensus 3 ~~~y~~~~~~~~~~v~y~E~r~~-p~~~~~~~~~~~~~~~~~~~a~----~--------~~gir~~li~~~~r~~~~e~~ 69 (257)
.+.|++.+...-.-+-|+|+=++ |+.-..+.+..++.+.+.+++. + ..++-+++. -..+.++.
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKla----Pdl~~~di 278 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIA----PDLSKEDL 278 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecC----CCCCHHHH
Confidence 36788776654323669999999 8753334444445444433221 1 123333332 22444556
Q ss_pred HHHHHHHHhhCCCceEEEe
Q 025169 70 METVKLALEMRDLGVVGID 88 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~ 88 (257)
.+.++.+.+..-++++.+.
T Consensus 279 ~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 279 EDIAAVALALGIDGLIISN 297 (409)
T ss_pred HHHHHHHHHcCCCEEEEEc
Confidence 6677767776666655543
No 329
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=49.20 E-value=90 Score=26.49 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHhhc---cceeeeeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHH
Q 025169 1 MSKRSYMDAVVEGLRA---VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLAL 77 (257)
Q Consensus 1 ~~~~~y~~~~~~~~~~---v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~ 77 (257)
|+=++|+.||...+++ |+.+|+...-+...-...+.+..|+ +..+..|-+++|. ..+...+........
T Consensus 15 M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~---~~le~tGr~Avl~-----G~G~psaval~at~a 86 (247)
T KOG4656|consen 15 MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQ---NTLENTGRDAVLR-----GAGKPSAVALLATVA 86 (247)
T ss_pred chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHH---HHHHhhChheEEe-----cCCchhHHHHHHHHH
Confidence 5568999999999997 4588888876555444444444444 3446678787765 233334455555556
Q ss_pred hhCCC
Q 025169 78 EMRDL 82 (257)
Q Consensus 78 ~~~~~ 82 (257)
+|..+
T Consensus 87 ~~~~~ 91 (247)
T KOG4656|consen 87 KYTGP 91 (247)
T ss_pred HhcCC
Confidence 67654
No 330
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=48.82 E-value=2.1e+02 Score=27.10 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeec
Q 025169 63 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 142 (257)
Q Consensus 63 ~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg 142 (257)
..+++...+.++...+.. .++--+.+..+......+.+.++++..++.|+.+...+.-..+++-+...-+.|..++.-|
T Consensus 226 ~rs~e~V~~Ei~~~~~~~-~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iG 304 (472)
T TIGR03471 226 TRSAESVIEEVKYALENF-PEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVG 304 (472)
T ss_pred eCCHHHHHHHHHHHHHhc-CCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEc
Confidence 346776655555443321 1122222333333344566777777777778776554422223333444445788887777
Q ss_pred ccc-cH----------------HHHHHHhcCCCcE
Q 025169 143 CCF-EE----------------EEWRKLKSSKIPV 160 (257)
Q Consensus 143 ~~l-~~----------------~~~~~l~~~~i~v 160 (257)
+.. ++ +.++.+++.|+.+
T Consensus 305 iES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v 339 (472)
T TIGR03471 305 YESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKV 339 (472)
T ss_pred CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeE
Confidence 643 33 2356666777654
No 331
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=48.65 E-value=89 Score=29.36 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=47.1
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
+++-++.+++|-+......+.. ++++..+..+.+.+.... .+=+++. ... ...++.+.+.+++.+++++.|-+
T Consensus 187 ~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~a~e~G~~-~~mv~~~--~~G--~~~l~~l~~~~~~~~l~ihaHra 259 (412)
T cd08213 187 KARDKAEAETGERKAYLANITA--PVREMERRAELVADLGGK-YVMIDVV--VAG--WSALQYLRDLAEDYGLAIHAHRA 259 (412)
T ss_pred HHHHHHHHhhCCcceEEEEecC--CHHHHHHHHHHHHHhCCC-eEEeecc--ccC--hHHHHHHHHhccccCeEEEECCC
Confidence 3344678889988877777775 378888888888776544 2222211 111 23366666666678999999954
No 332
>PLN00200 argininosuccinate synthase; Provisional
Probab=48.34 E-value=44 Score=31.24 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=80.0
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCC--CCHhhHHHHHh-cCCcE-E----e-ecccccHHHHHHHhcCCCcEEecccc--
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEI--PNKEEIQSMLD-FLPQR-I----G-HACCFEEEEWRKLKSSKIPVEICLTS-- 166 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~--~~~~~i~~~l~-lg~~r-i----~-Hg~~l~~~~~~~l~~~~i~v~~cP~S-- 166 (257)
|..++.+++.|++.|..+.+|-.=. .+....+-.+. +.++. + . -+..--++.+++.+++|+++..-|.+
T Consensus 99 p~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~~~y 178 (404)
T PLN00200 99 PLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSIY 178 (404)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhCCCCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4568889999999999999885422 22212222222 33321 1 1 11112456778888899987655543
Q ss_pred ----cceeccc-----cCCC-cccH-------------------HHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCC
Q 025169 167 ----NIRTETI-----SSLD-IHHF-------------------VDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFS 217 (257)
Q Consensus 167 ----N~~l~~~-----~~~~-~~pi-------------------~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ 217 (257)
|++-.++ .+.. ..|- .-=+++|+||+|+ |-.+...+++..+......+|
T Consensus 179 S~D~Nlw~~s~e~g~ledp~~~~p~~~~~~t~~~~~~p~~p~~v~i~Fe~G~pv~ln--G~~~~~~~li~~lN~i~g~~G 256 (404)
T PLN00200 179 SRDRNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAIN--GKTLSPATLLTKLNEIGGKHG 256 (404)
T ss_pred cccccccceecccccccCCCCCCCHHHhhccCCHhHCCCCCeEEEEEEEccEEEEEC--CeeCCHHHHHHHHHHHHhhcc
Confidence 4442111 1111 1111 1114789999994 333323466666655555443
Q ss_pred C---------------------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 218 L---------------------GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 218 l---------------------s~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+ +...++-.+...++..-++.++ .++...++..+.
T Consensus 257 vGr~d~vE~r~vG~KsR~vyEaPa~~iL~~Ah~~LE~~~l~~~~-~~~k~~~~~~~~ 312 (404)
T PLN00200 257 IGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRET-MQVKDSLALKYA 312 (404)
T ss_pred cCcccccccccccccccceecChHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHH
Confidence 2 2344555567777777776643 233344444433
No 333
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=48.30 E-value=1.6e+02 Score=24.57 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=48.8
Q ss_pred HHHHHHHHHH--cCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcCCCcEEecccc
Q 025169 101 FLPALKFARE--QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTS 166 (257)
Q Consensus 101 ~~~~~~~A~~--~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~~i~v~~cP~S 166 (257)
+.++++..++ .++++.+-. ..++-+..+++.|++-|-.-..+ +++.++++++++.+++.+++.
T Consensus 59 l~~~l~~i~~~~~~~plSIDT---~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 59 LVPVLQAIREENPDVPLSIDT---FNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHhccCCCeEEEEEC---CCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 4556677775 689998876 45677788888888877665443 678899999999999988876
No 334
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=47.93 E-value=98 Score=29.06 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=47.0
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++-++.+++|-+......+.. ++++..+..+.+.+..... .+.+...| ...++.+.+.++..+++++.|-+
T Consensus 201 a~~~a~~eTG~~~~ya~NiT~--~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~ih~Hra 272 (412)
T TIGR03326 201 VRDKVEAETGERKEYLANITA--PVREMERRAELVADLGGQYVMVDVVVCG------WSALQYIRELTEDLGLAIHAHRA 272 (412)
T ss_pred HHHHHHHHhCCcceEEEEecC--CHHHHHHHHHHHHHhCCCeEEEEeeccc------hHHHHHHHHhhccCCeEEEEcCC
Confidence 333677889988888777775 3788888888887765442 22222222 23466666666678999999954
No 335
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=47.21 E-value=2.3e+02 Score=25.99 Aligned_cols=99 Identities=10% Similarity=0.108 Sum_probs=54.7
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCC--------------------------CHhhHHHHHh-cCCcEE------eecccc
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIP--------------------------NKEEIQSMLD-FLPQRI------GHACCF 145 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~--------------------------~~~~i~~~l~-lg~~ri------~Hg~~l 145 (257)
...+++++.|+..|+.|-.=.|... +|+...+.++ .|+|.+ .||.+-
T Consensus 123 ~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk 202 (347)
T PRK09196 123 DVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYK 202 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCC
Confidence 5567889999999987765442211 1223333332 588765 599884
Q ss_pred c---H-------HHHHHHhcC--CCcEEecccccce----------ec---cccCCCcccHHHHHhcCC-CEEecCCC
Q 025169 146 E---E-------EEWRKLKSS--KIPVEICLTSNIR----------TE---TISSLDIHHFVDLYKAQH-PLVLCTDD 197 (257)
Q Consensus 146 ~---~-------~~~~~l~~~--~i~v~~cP~SN~~----------l~---~~~~~~~~pi~~l~~~Gv-~v~lgTD~ 197 (257)
. | +.++.+++. ++++++==.|... -| ...+...--+++..+.|| +|-++||-
T Consensus 203 ~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl 280 (347)
T PRK09196 203 FTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDL 280 (347)
T ss_pred CCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHH
Confidence 2 2 234444333 4666654444320 00 000112234788889998 48888884
No 336
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=47.06 E-value=1.1e+02 Score=29.33 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=46.7
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|-+......+.. .++++..+..+.+.+..... .+.+...| ..-++.+.+.|++.+++++.|-
T Consensus 216 ~a~~~a~~eTG~~k~y~~NiT~-~~~~em~~ra~~~~e~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~IhaHr 288 (468)
T PRK04208 216 EAIDKAEAETGERKGHYLNVTA-PTMEEMYKRAEFAKELGSPIVMIDVVTAG------WTALQSLREWCRDNGLALHAHR 288 (468)
T ss_pred HHHHHHHHhhCCcceEEEecCC-CCHHHHHHHHHHHHHhCCCEEEEeccccc------cHHHHHHHHhhhcCCcEEEecC
Confidence 3444778889988777766664 23777878878777654431 12222222 2347777777778899999995
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 289 A 289 (468)
T PRK04208 289 A 289 (468)
T ss_pred C
Confidence 4
No 337
>PRK15452 putative protease; Provisional
Probab=46.77 E-value=2.4e+02 Score=26.80 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=18.7
Q ss_pred CCChhcHHHHHHHHHHcCCceeee
Q 025169 95 KGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 95 ~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
.++.+.++++++.|+++|.++.+-
T Consensus 42 ~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 42 EFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEE
Confidence 456678888899999988777654
No 338
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=46.69 E-value=2.1e+02 Score=25.37 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=11.6
Q ss_pred HHHHHHhcCCCcEEecccccceec
Q 025169 148 EEWRKLKSSKIPVEICLTSNIRTE 171 (257)
Q Consensus 148 ~~~~~l~~~~i~v~~cP~SN~~l~ 171 (257)
+.++.+++.|+.+ .+.+.+|
T Consensus 149 ~~i~~a~~~Gi~~----~s~~iiG 168 (309)
T TIGR00423 149 EVIKTAHRLGIPT----TATMMFG 168 (309)
T ss_pred HHHHHHHHcCCCc----eeeEEec
Confidence 3466677777653 3555555
No 339
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.68 E-value=1.8e+02 Score=24.48 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=62.1
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCc
Q 025169 58 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 137 (257)
Q Consensus 58 ~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ 137 (257)
+.+.|..+++++.+..+...+ .|+-.+-+.- .++.-+..+-+..+++. .+.+=+|--.+.+.++++++.|++
T Consensus 7 v~Vir~~~~~~a~~ia~al~~---gGi~~iEit~----~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~ 78 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAA---GGLPAIEITL----RTPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSR 78 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHH---CCCCEEEEeC----CCccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCC
Confidence 345676677777777665432 2332332221 12333333333334443 355555544556777888888887
Q ss_pred EEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 138 RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 138 ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
-|.- -.++++.++..+++++++. |.. + ...-+...++.|..
T Consensus 79 FivS-P~~~~~vi~~a~~~~i~~i--PG~------~---TptEi~~A~~~Ga~ 119 (201)
T PRK06015 79 FIVS-PGTTQELLAAANDSDVPLL--PGA------A---TPSEVMALREEGYT 119 (201)
T ss_pred EEEC-CCCCHHHHHHHHHcCCCEe--CCC------C---CHHHHHHHHHCCCC
Confidence 6542 2357888888888887753 421 0 01126677788864
No 340
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=2.4e+02 Score=25.83 Aligned_cols=201 Identities=16% Similarity=0.175 Sum_probs=102.2
Q ss_pred CCCchhhhhhHhhcccCCCcEEEEEEEeeCCC-CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHc
Q 025169 33 RPVNTKNMNDACNGTRGKKIYVRLLLSIDRRE-TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 33 ~~~~~~~~~~~~~a~~~~gir~~li~~~~r~~-~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~ 111 (257)
+.|.++ ++++++-+.+.|.+..+...+.=+. ..+...+.++...+...+.++- +++ .++..+++.
T Consensus 45 nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv----~Dp---------g~i~l~~e~ 110 (347)
T COG0826 45 NFSVED-LAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIV----ADP---------GLIMLARER 110 (347)
T ss_pred cCCHHH-HHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEE----cCH---------HHHHHHHHh
Confidence 344444 5555566666677665554433222 2233344544444333222222 221 245677877
Q ss_pred CCceeeecCCCC---CHhhHHHHHhcCCcEEeecccccHHHHHHHhcCC--CcEEe-------------cccccceeccc
Q 025169 112 GLQITLHCGEIP---NKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSK--IPVEI-------------CLTSNIRTETI 173 (257)
Q Consensus 112 gl~v~~Ha~E~~---~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~--i~v~~-------------cP~SN~~l~~~ 173 (257)
+=.+-+|++=.. +...+.-.-++|+.|+.+.--++-+++..+++.- +.+++ |-.||...+.-
T Consensus 111 ~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia~SgRC~ls~~~~~~~ 190 (347)
T COG0826 111 GPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIAYSGRCLLSNYFTGRS 190 (347)
T ss_pred CCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhccCchhhhhhhccCCC
Confidence 733333443111 2334444455799999999988877777766553 66655 67777765532
Q ss_pred cCCC----ccc----HHHHHhcCCCEEecCCCCCCCC---CChHHHHHHHHHh----CCC-----CHHHHHHH---HHHH
Q 025169 174 SSLD----IHH----FVDLYKAQHPLVLCTDDSGVFS---TSVSREYDLAASA----FSL-----GRREMFQL---AKSA 230 (257)
Q Consensus 174 ~~~~----~~p----i~~l~~~Gv~v~lgTD~~~~~~---~~l~~E~~~a~~~----~~l-----s~~~v~~~---~~n~ 230 (257)
++-+ ..| +......|-...++ ++-.+. .++.+++..+... +++ +..-+.+. -+.+
T Consensus 191 ~n~g~c~~~~r~~~~~~~~~~~~~~~~~~--g~~~~s~~dl~~~~~l~~L~~~GV~s~KIeGR~k~~~yv~~v~~~yr~a 268 (347)
T COG0826 191 ANRGGCCQPCRWGYYLVETLCKGEVLSLN--GTYLMSPKDLNLLEELPELIEAGVDSLKIEGRMKSIEYVARVVKAYRQA 268 (347)
T ss_pred CCCCCcCCcCcccccccccCCCCceEecc--ceEeecchhhhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2211 111 23455677777776 333222 4666776665542 221 33334433 3566
Q ss_pred HHHcCCChH--HHHHHHHHHH
Q 025169 231 VKFIFANGR--VKEDLKEIFD 249 (257)
Q Consensus 231 ~~~~~~~~~--~k~~l~~~~~ 249 (257)
+......+. .++.+...+.
T Consensus 269 id~~~~~~~~~~~~~~~~~~~ 289 (347)
T COG0826 269 IDAAEEGDPLLFREALEEELE 289 (347)
T ss_pred HHHHhcCCcchhhhHHHHHHh
Confidence 665554443 4555554433
No 341
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=45.93 E-value=92 Score=29.85 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|-+..+.+.+.- .++++..+..+.+.+..... .+.+.+.| ...++.+.+.|++.+++++.|-
T Consensus 223 ~a~~~a~~eTG~~~~y~~NiTa-~~~~em~~ra~~a~e~G~~~~mv~~~~~G------~~al~~l~~~~~~~~l~IhaHr 295 (475)
T CHL00040 223 EAIYKAQAETGEIKGHYLNATA-GTCEEMYKRAVFARELGVPIVMHDYLTGG------FTANTSLAHYCRDNGLLLHIHR 295 (475)
T ss_pred HHHHHHHHhhCCcceeeeccCC-CCHHHHHHHHHHHHHcCCceEEEeccccc------cchHHHHHHHhhhcCceEEecc
Confidence 3344778888876665544441 25788888888887765442 22222222 2347777777778899999996
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 296 A 296 (475)
T CHL00040 296 A 296 (475)
T ss_pred c
Confidence 4
No 342
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.83 E-value=1.6e+02 Score=26.10 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 145 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l 145 (257)
|..+-+..+..++|+.+|=|-..+.+.++.++.+|..-|--++.+
T Consensus 191 ~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~ 235 (284)
T PRK12857 191 FDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 444444445568999999775556677888888888766655544
No 343
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=45.66 E-value=1.4e+02 Score=24.42 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=51.0
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHHhcCCcEEe--eccc------ccHHHHHHHhcCCCcEEecccccce
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLDFLPQRIG--HACC------FEEEEWRKLKSSKIPVEICLTSNIR 169 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l~lg~~ri~--Hg~~------l~~~~~~~l~~~~i~v~~cP~SN~~ 169 (257)
....++.+.++++|+++-+=+ +-....+.+..+.++|++.+. +|+. ...+.++.+++.--.+.+++.
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~---- 164 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVA---- 164 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEE----
Confidence 456788889999999987532 111123555666777888653 2321 123445555432111122222
Q ss_pred eccccCCCcccHHHHHhcCCC-EEecCC
Q 025169 170 TETISSLDIHHFVDLYKAQHP-LVLCTD 196 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~-v~lgTD 196 (257)
|.+ ....+.++++.|+. +++|+.
T Consensus 165 -GGI---~~~n~~~~~~~Ga~~v~vGsa 188 (206)
T TIGR03128 165 -GGI---NLDTIPDVIKLGPDIVIVGGA 188 (206)
T ss_pred -CCc---CHHHHHHHHHcCCCEEEEeeh
Confidence 221 23458899999987 777776
No 344
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=45.42 E-value=1.2e+02 Score=28.32 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=42.6
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|-+..+...+.. ++++..+..+.+.+..... .+.+...| + ..++ .+++..+++++.|-
T Consensus 199 ~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~~~~~G~~~~mv~~~~~G----~--~~l~---~l~~~~~l~IhaHr 267 (406)
T cd08207 199 RVINDHAQRTGRKVMYAFNITD--DIDEMRRNHDLVVEAGGTCVMVSLNSVG----L--SGLA---ALRRHSQLPIHGHR 267 (406)
T ss_pred HHHHHHHHhhCCcceEEEecCC--CHHHHHHHHHHHHHhCCCeEEEeccccc----h--HHHH---HHHhcCCceEEECC
Confidence 3344778889988877777775 4788888888887765542 22222222 1 1233 33456799999885
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 268 a 268 (406)
T cd08207 268 N 268 (406)
T ss_pred C
Confidence 4
No 345
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=45.26 E-value=1.1e+02 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=35.4
Q ss_pred eEEEeccCCCCCC-Ch-hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE
Q 025169 84 VVGIDLSGNPTKG-EW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI 139 (257)
Q Consensus 84 vvg~~l~g~~~~~-~~-~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri 139 (257)
-++|+-.+..|.. .| -.|..+-+..+..++|+.+|=|-..+.++++.++.+|..-+
T Consensus 174 A~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~Kv 231 (286)
T COG0191 174 AAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKV 231 (286)
T ss_pred eeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEE
Confidence 3555555434442 22 33444444444456999999876666788999999998554
No 346
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.07 E-value=2e+02 Score=24.79 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=50.9
Q ss_pred hcHHHHHHHHHHcCCceeeecC-CCCCHhhHHHHHh-cCC--cEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHCG-EIPNKEEIQSMLD-FLP--QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~-E~~~~~~i~~~l~-lg~--~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.++++...+.+..+++|.. .......+...+. ++. ...-+|..-.++..+.+++..+. ++|+....-+...
T Consensus 195 ~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~--l~~s~~~~~~~~e 272 (355)
T cd03799 195 DYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLF--VLPSVTAADGDRE 272 (355)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEE--EecceecCCCCcc
Confidence 4555666665555556666653 2222233433332 332 33445544456677788777654 4554321111101
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCC
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
+++ ..+.+.+..|+|| |+||.++
T Consensus 273 ~~~-~~~~Ea~a~G~Pv-i~~~~~~ 295 (355)
T cd03799 273 GLP-VVLMEAMAMGLPV-ISTDVSG 295 (355)
T ss_pred Ccc-HHHHHHHHcCCCE-EecCCCC
Confidence 112 3578899999999 5677643
No 347
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=45.00 E-value=99 Score=26.76 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=34.4
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
.+.++++.+..++.|+++..-.. ++++.+..+.++|++++.
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VE 152 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIE 152 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEE
Confidence 46788899999999999999883 556788888889999875
No 348
>PLN02858 fructose-bisphosphate aldolase
Probab=44.88 E-value=3.8e+02 Score=29.47 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=54.3
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCC----------------HhhHHHHHh-cCCcEE------eecccc------cHH
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPN----------------KEEIQSMLD-FLPQRI------GHACCF------EEE 148 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~----------------~~~i~~~l~-lg~~ri------~Hg~~l------~~~ 148 (257)
....+++.+.|+..|+.|-.=.|...+ +++..+.++ -|+|.+ .||.|- +-+
T Consensus 1209 i~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~ 1288 (1378)
T PLN02858 1209 ISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLD 1288 (1378)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHH
Confidence 355678899999999888665543321 122223332 377764 598874 234
Q ss_pred HHHHHhcC----CCcEEecccccceeccccCCCcccHHHHHhcCC-CEEecCC
Q 025169 149 EWRKLKSS----KIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTD 196 (257)
Q Consensus 149 ~~~~l~~~----~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv-~v~lgTD 196 (257)
.++.+++. ++++++==.| +....-+++..+.|| +|-++||
T Consensus 1289 ~l~~i~~~~~~~~vpLVlHGgS--------G~~~~~~~~ai~~Gi~KiNi~T~ 1333 (1378)
T PLN02858 1289 LLKELRALSSKKGVLLVLHGAS--------GLPESLIKECIENGVRKFNVNTE 1333 (1378)
T ss_pred HHHHHHHHhcCCCCcEEEeCCC--------CCCHHHHHHHHHcCCeEEEeCHH
Confidence 55555543 4665543333 223445888888998 5888887
No 349
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=44.85 E-value=13 Score=29.34 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=44.6
Q ss_pred cCCcEEeecc------cccHHHHHHHhcCCCcEEecccccceecc-ccCCCcccHHHH--HhcCCCEEecCCCCCCCCCC
Q 025169 134 FLPQRIGHAC------CFEEEEWRKLKSSKIPVEICLTSNIRTET-ISSLDIHHFVDL--YKAQHPLVLCTDDSGVFSTS 204 (257)
Q Consensus 134 lg~~ri~Hg~------~l~~~~~~~l~~~~i~v~~cP~SN~~l~~-~~~~~~~pi~~l--~~~Gv~v~lgTD~~~~~~~~ 204 (257)
..+|.|.+-. .++...++.++++|+.+|+|-..-+.... ....-...+..+ +..|.++.++|.....+..-
T Consensus 45 ~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr 124 (150)
T PF01876_consen 45 PRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLLRSDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELR 124 (150)
T ss_dssp T--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG--
T ss_pred CCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCc
Confidence 3466665532 34678899999999999998654330110 000000112222 23349999999977666643
Q ss_pred hHHHHHHHHHhCCCCHHHHHHH
Q 025169 205 VSREYDLAASAFSLGRREMFQL 226 (257)
Q Consensus 205 l~~E~~~a~~~~~ls~~~v~~~ 226 (257)
-..++..+...+|++.++..++
T Consensus 125 ~P~dv~~l~~~lGl~~~~a~~a 146 (150)
T PF01876_consen 125 SPRDVINLLALLGLSEEEAKKA 146 (150)
T ss_dssp -HHHHHHHHHHTT--HHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHH
Confidence 3455555556799999988775
No 350
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=43.74 E-value=43 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=33.3
Q ss_pred CHhhHHHHHhcCCcE--Eeecc---cccHHHHHHHhcCCCcEEecccccc
Q 025169 124 NKEEIQSMLDFLPQR--IGHAC---CFEEEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 124 ~~~~i~~~l~lg~~r--i~Hg~---~l~~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
..+++...+...++. +|.|- .++++..+.+.++||.+++-+|.+.
T Consensus 41 ~~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~A 90 (109)
T cd05560 41 TAAHFEALLALQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQAA 90 (109)
T ss_pred CHHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHHH
Confidence 456666666666664 56653 4588999999999999999888754
No 351
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=43.45 E-value=2.2e+02 Score=25.12 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.4
Q ss_pred cccccHHHHHHHhc
Q 025169 142 ACCFEEEEWRKLKS 155 (257)
Q Consensus 142 g~~l~~~~~~~l~~ 155 (257)
|+.++++.+..|++
T Consensus 141 g~~l~~~~i~~L~~ 154 (290)
T TIGR00683 141 GVNMGIEQFGELYK 154 (290)
T ss_pred ccCcCHHHHHHHhc
Confidence 44455555555553
No 352
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=43.25 E-value=1.9e+02 Score=24.01 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=39.7
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhh---HHHHHhcCCcEEe-ecccccHHHHHHHhcCCCcEEec
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEE---IQSMLDFLPQRIG-HACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~---i~~~l~lg~~ri~-Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
...++.+.+.++++|..+.+.-.+...... +...+..+++-+. =+...++..++.++++|++++.+
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 15 ARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 355566778889999988887655432211 2233334555421 12233566788888899998764
No 353
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.82 E-value=2.1e+02 Score=24.09 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=79.4
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC--ceeeecCCCCCHhhHHHHHhcCC
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL--QITLHCGEIPNKEEIQSMLDFLP 136 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl--~v~~Ha~E~~~~~~i~~~l~lg~ 136 (257)
.+.|..+++.+....+...+ .|+--+-+.- .++.-+..+-+.+++++- .+.+=+|--...+.++.+++.|+
T Consensus 17 ~vir~~~~~~a~~~~~al~~---~Gi~~iEit~----~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA 89 (213)
T PRK06552 17 AVVRGESKEEALKISLAVIK---GGIKAIEVTY----TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA 89 (213)
T ss_pred EEEECCCHHHHHHHHHHHHH---CCCCEEEEEC----CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC
Confidence 44565667766666554432 2322222211 122333333344444432 25555554455677778888888
Q ss_pred cEEeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC-CCCCChHHHHHHHHHh
Q 025169 137 QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG-VFSTSVSREYDLAASA 215 (257)
Q Consensus 137 ~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~-~~~~~l~~E~~~a~~~ 215 (257)
+-+. .-.++++.++..+++|+++. |... ...-+...++.|..+.== -|+ .++.+....++.....
T Consensus 90 ~Fiv-sP~~~~~v~~~~~~~~i~~i--PG~~---------T~~E~~~A~~~Gad~vkl--FPa~~~G~~~ik~l~~~~p~ 155 (213)
T PRK06552 90 QFIV-SPSFNRETAKICNLYQIPYL--PGCM---------TVTEIVTALEAGSEIVKL--FPGSTLGPSFIKAIKGPLPQ 155 (213)
T ss_pred CEEE-CCCCCHHHHHHHHHcCCCEE--CCcC---------CHHHHHHHHHcCCCEEEE--CCcccCCHHHHHHHhhhCCC
Confidence 7665 33457788888888887754 4221 011255566777653221 111 1122222332222111
Q ss_pred ------CCCCHHHHHHHHHHHHHHcC
Q 025169 216 ------FSLGRREMFQLAKSAVKFIF 235 (257)
Q Consensus 216 ------~~ls~~~v~~~~~n~~~~~~ 235 (257)
-|++.+.+.+....|+....
T Consensus 156 ip~~atGGI~~~N~~~~l~aGa~~va 181 (213)
T PRK06552 156 VNVMVTGGVNLDNVKDWFAAGADAVG 181 (213)
T ss_pred CEEEEECCCCHHHHHHHHHCCCcEEE
Confidence 27888888887776655444
No 354
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.66 E-value=2.2e+02 Score=24.28 Aligned_cols=101 Identities=7% Similarity=-0.013 Sum_probs=53.2
Q ss_pred ccceeeeecc-CccccccCCCchhhhhhHhhcccCCCcEEEEEEEeeC-------CCCH-------HHHHHHHHHHHhhC
Q 025169 16 AVSAVDVDFA-SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR-------RETT-------EAAMETVKLALEMR 80 (257)
Q Consensus 16 ~v~y~E~r~~-p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r-------~~~~-------e~~~~~~~~~~~~~ 80 (257)
++.++|+... |..+..+ .+ ..-++...+..++.|+++..+..... ..++ +...+.++.+..+.
T Consensus 26 G~~~vEl~~~~~~~~~~~-~~-~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG 103 (275)
T PRK09856 26 GYDGIEIWGGRPHAFAPD-LK-AGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMN 103 (275)
T ss_pred CCCEEEEccCCccccccc-cC-chHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5889999765 4333221 11 12345566777889998754321100 0122 12234445555555
Q ss_pred CCceEEEeccCCCCCCCh--------hcHHHHHHHHHHcCCceeeec
Q 025169 81 DLGVVGIDLSGNPTKGEW--------TTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 81 ~~~vvg~~l~g~~~~~~~--------~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.+.++ +.........+. +.++++.+.|+++|+.+.+|-
T Consensus 104 a~~i~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 104 AGYTL-ISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred CCEEE-EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 55332 222111111111 347788899999999999886
No 355
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=41.58 E-value=66 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
.+++++.+.++....+.....-++.+.|.|+...++.+.++++.+++.|+++.++..
T Consensus 46 ~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TN 102 (235)
T TIGR02493 46 VTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTS 102 (235)
T ss_pred CCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 456666555554433322111134445656666677778999999999998888753
No 356
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=41.54 E-value=2.3e+02 Score=24.95 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=8.2
Q ss_pred cccccHHHHHHHhc
Q 025169 142 ACCFEEEEWRKLKS 155 (257)
Q Consensus 142 g~~l~~~~~~~l~~ 155 (257)
|+.++++.+..|++
T Consensus 140 g~~l~~~~l~~L~~ 153 (294)
T TIGR02313 140 AQEIAPKTMARLRK 153 (294)
T ss_pred CcCCCHHHHHHHHh
Confidence 44556666666653
No 357
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=41.41 E-value=1.6e+02 Score=26.37 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.++++..+.++.+.++. +..+.+. |.+...+.+.+.++++..++.+..+.+|+
T Consensus 72 ls~eei~~~~~~~~~~G---~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~ 125 (340)
T TIGR03699 72 LSVEEILQKIEELVAYG---GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS 125 (340)
T ss_pred CCHHHHHHHHHHHHHcC---CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC
Confidence 46677666666555432 3233333 33334566777888888888776677775
No 358
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=41.36 E-value=1.9e+02 Score=24.26 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=40.4
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEEeec-cc---c--cHHHHHHHhcCCCcEEec
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIGHA-CC---F--EEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri~Hg-~~---l--~~~~~~~l~~~~i~v~~c 163 (257)
...+..+-+.++++|+.+.+...+..... .++..+..+++-+.-. .. . ++..++.+.+++++++.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 15 PSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEE
Confidence 35566777888999999988776543221 2334444577754321 11 1 234567788889998765
No 359
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=41.29 E-value=2.9e+02 Score=25.43 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=49.9
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHH-hcCC-cEE-eecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSML-DFLP-QRI-GHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l-~lg~-~ri-~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.+++...++.+..+..+. |.....+.++..+ ++|. +++ -+|..-.++..++++...+.+ .|+-.-..+...
T Consensus 238 ~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v--~pS~~~~~g~~E 315 (406)
T PRK15427 238 HVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFL--LPSVTGADGDME 315 (406)
T ss_pred HHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEE--ECCccCCCCCcc
Confidence 345555555555555555543 4332233444444 3554 332 344433456678888777654 454211111111
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCC
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
+++ ..+.+.+..|+|| |+||.++
T Consensus 316 g~p-~~llEAma~G~PV-I~t~~~g 338 (406)
T PRK15427 316 GIP-VALMEAMAVGIPV-VSTLHSG 338 (406)
T ss_pred Ccc-HHHHHHHhCCCCE-EEeCCCC
Confidence 111 2477899999998 6677544
No 360
>PRK08005 epimerase; Validated
Probab=41.12 E-value=2.2e+02 Score=24.04 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecc-C---CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-e
Q 025169 66 TEAAMETVKLALEMRDLGVVGIDLS-G---NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-G 140 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~~~vvg~~l~-g---~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~ 140 (257)
+-...+.++...+..-+ .+-+|+- | +..++.+..++.+.+ ...+++.+|.-=..+...+....+.|++.| -
T Consensus 12 ~~~l~~el~~l~~~g~d-~lHiDvMDG~FVPN~tfG~~~i~~l~~---~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 12 PLRYAEALTALHDAPLG-SLHLDIEDTSFINNITFGMKTIQAVAQ---QTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred HHHHHHHHHHHHHCCCC-EEEEeccCCCcCCccccCHHHHHHHHh---cCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 33344455544443333 5566653 3 122445555554433 247899999864444456667777899875 5
Q ss_pred ecccc--cHHHHHHHhcCC--CcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHH----HHHH
Q 025169 141 HACCF--EEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE----YDLA 212 (257)
Q Consensus 141 Hg~~l--~~~~~~~l~~~~--i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E----~~~a 212 (257)
|.-.. ....++.+++.| +.++++|.+... .+..++..==.|.+=|=+|+..|..+..+ .+.+
T Consensus 88 H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~----------~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l 157 (210)
T PRK08005 88 HAESVQNPSEILADIRAIGAKAGLALNPATPLL----------PYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQS 157 (210)
T ss_pred cccCccCHHHHHHHHHHcCCcEEEEECCCCCHH----------HHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHH
Confidence 66432 236778888876 556788864322 23333332223444444666555433322 2222
Q ss_pred HHh---------CCCCHHHHHHHHHHHHH
Q 025169 213 ASA---------FSLGRREMFQLAKSAVK 232 (257)
Q Consensus 213 ~~~---------~~ls~~~v~~~~~n~~~ 232 (257)
.+. -|++.+.+.++...|+.
T Consensus 158 ~~~~~~~~I~VDGGI~~~~i~~l~~aGad 186 (210)
T PRK08005 158 REHFPAAECWADGGITLRAARLLAAAGAQ 186 (210)
T ss_pred HHhcccCCEEEECCCCHHHHHHHHHCCCC
Confidence 221 26888888888776665
No 361
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=41.08 E-value=2.8e+02 Score=25.23 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeee
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
.+.++..+.++.+.+. ++..+.+.|.|....++ +.++++.+++.|+.+.+-
T Consensus 46 ~~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~~~-~~~il~~~~~~g~~~~i~ 96 (378)
T PRK05301 46 LSTEEWIRVLREARAL---GALQLHFSGGEPLLRKD-LEELVAHARELGLYTNLI 96 (378)
T ss_pred CCHHHHHHHHHHHHHc---CCcEEEEECCccCCchh-HHHHHHHHHHcCCcEEEE
Confidence 4566666777665443 34455566655555544 778889999888766553
No 362
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=40.99 E-value=2.3e+02 Score=24.26 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=58.8
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc-CC--C-CCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH
Q 025169 56 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS-GN--P-TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 56 li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~-g~--~-~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~ 131 (257)
+..++.- .+.-...+.++...+ .-+ .+-+|+- |. | .++.+..++.+.+ ..++++.+|.-=..+...+...
T Consensus 5 I~pSil~-ad~~~l~~el~~l~~-g~d-~lH~DiMDG~FVPN~tfg~~~i~~ir~---~t~~~~DvHLMv~~P~~~i~~~ 78 (229)
T PRK09722 5 ISPSLMC-MDLLKFKEQIEFLNS-KAD-YFHIDIMDGHFVPNLTLSPFFVSQVKK---LASKPLDVHLMVTDPQDYIDQL 78 (229)
T ss_pred EEeehhh-cCHHHHHHHHHHHHh-CCC-EEEEecccCccCCCcccCHHHHHHHHh---cCCCCeEEEEEecCHHHHHHHH
Confidence 4444443 233333444454444 222 5566653 31 2 2445554444332 2479999998644444566666
Q ss_pred HhcCCcE-Eeecccc--c-HHHHHHHhcCC--CcEEecccc
Q 025169 132 LDFLPQR-IGHACCF--E-EEEWRKLKSSK--IPVEICLTS 166 (257)
Q Consensus 132 l~lg~~r-i~Hg~~l--~-~~~~~~l~~~~--i~v~~cP~S 166 (257)
.+.|++. .-|.-.. + ...++.+++.| +.++++|.+
T Consensus 79 ~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T 119 (229)
T PRK09722 79 ADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPET 119 (229)
T ss_pred HHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCC
Confidence 7789987 4677643 2 35678888876 556888854
No 363
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=40.84 E-value=3.7e+02 Score=26.60 Aligned_cols=182 Identities=11% Similarity=0.003 Sum_probs=87.0
Q ss_pred CCCchhhhhhHhhcccCCCcEEEE----EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHH
Q 025169 33 RPVNTKNMNDACNGTRGKKIYVRL----LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA 108 (257)
Q Consensus 33 ~~~~~~~~~~~~~a~~~~gir~~l----i~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A 108 (257)
+-+-++.++...++.....+..-+ +++.. +.+.+-.+..++.+.++.-+.+.-||- -+..+.++...+.+
T Consensus 59 ~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~-~~~d~vv~~~v~~a~~~Gidv~Rifd~-----lnd~~n~~~~i~~~ 132 (596)
T PRK14042 59 KEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYR-NYADDVVRAFVKLAVNNGVDVFRVFDA-----LNDARNLKVAIDAI 132 (596)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeccccccccc-cCChHHHHHHHHHHHHcCCCEEEEccc-----CcchHHHHHHHHHH
Confidence 445567777777777666555433 22222 223333445555554432221111221 12345677788888
Q ss_pred HHcCCceeeecC--CC--CCHhh----HHHHHhcCCcEEeec---ccccHH----HHHHHhcC-CCcEEecccccceecc
Q 025169 109 REQGLQITLHCG--EI--PNKEE----IQSMLDFLPQRIGHA---CCFEEE----EWRKLKSS-KIPVEICLTSNIRTET 172 (257)
Q Consensus 109 ~~~gl~v~~Ha~--E~--~~~~~----i~~~l~lg~~ri~Hg---~~l~~~----~~~~l~~~-~i~v~~cP~SN~~l~~ 172 (257)
++.|..+..=.. -+ ...+. ++++.++|+++|.=. =.++|. ++..++++ ++++.+=--.+.
T Consensus 133 k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~---- 208 (596)
T PRK14042 133 KSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTS---- 208 (596)
T ss_pred HHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCC----
Confidence 888875443211 11 11222 234445788776321 123443 44555543 344422112222
Q ss_pred ccCCCcccHHHHHhcCCCEEecCCCCCCCC--CChHHHHHHHHHhC----CCCHHHHHHH
Q 025169 173 ISSLDIHHFVDLYKAQHPLVLCTDDSGVFS--TSVSREYDLAASAF----SLGRREMFQL 226 (257)
Q Consensus 173 ~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~--~~l~~E~~~a~~~~----~ls~~~v~~~ 226 (257)
+++.......+++|+.+.=+|=++...+ ..-++++..+.... +++.+.+.++
T Consensus 209 --Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~ 266 (596)
T PRK14042 209 --GLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYDTELDLNILLEI 266 (596)
T ss_pred --CcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 2234456677899998765555543333 22335555444433 3444444444
No 364
>PRK05370 argininosuccinate synthase; Validated
Probab=40.70 E-value=3.3e+02 Score=25.92 Aligned_cols=64 Identities=11% Similarity=-0.070 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHcCCceeeecCCCCCHhhHH--HHHh-cCCc--EEe----eccc----ccHHHHHHHhcCCCcEEec
Q 025169 100 TFLPALKFAREQGLQITLHCGEIPNKEEIQ--SMLD-FLPQ--RIG----HACC----FEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~--~~l~-lg~~--ri~----Hg~~----l~~~~~~~l~~~~i~v~~c 163 (257)
.-+.+++.|++.|.....|-+-..+.+.++ .++. +.|+ .|+ .... --+++++.++++||++...
T Consensus 110 ia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~ 186 (447)
T PRK05370 110 TGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMS 186 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCcc
Confidence 345678889999999999976544443332 1221 3442 221 2221 2467899999999998754
No 365
>PLN02590 probable tyrosine decarboxylase
Probab=40.61 E-value=1.4e+02 Score=29.04 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=46.0
Q ss_pred hhcccCCCcE---EEEEEEee---CCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 44 CNGTRGKKIY---VRLLLSID---RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 44 ~~a~~~~gir---~~li~~~~---r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
.+|+.-.|+. ++.+.+=. ...+++..++.++...+-....+.-+..+|.-.++..+.+.++.+.|+++|+.+|+
T Consensus 243 ~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHV 322 (539)
T PLN02590 243 RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHV 322 (539)
T ss_pred HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEE
Confidence 3666667774 44444321 13567776666664433222223333445655566677899999999999987766
Q ss_pred ecC
Q 025169 118 HCG 120 (257)
Q Consensus 118 Ha~ 120 (257)
-++
T Consensus 323 DaA 325 (539)
T PLN02590 323 DAA 325 (539)
T ss_pred ecc
Confidence 653
No 366
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=40.36 E-value=2.4e+02 Score=25.44 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhCC-CceEEEeccC-CCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecc
Q 025169 66 TEAAMETVKLALEMRD-LGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 143 (257)
Q Consensus 66 ~e~~~~~~~~~~~~~~-~~vvg~~l~g-~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~ 143 (257)
.++.++.++...+... ..++ -++| -|...+++.+.++.+.+++.|.++.+-++ .+.+.++++.+|..|
T Consensus 113 ~~~~~~~l~~~~~~l~~~d~V--vlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S----g~~L~~~L~~~P~lI---- 182 (310)
T COG1105 113 EAELEQFLEQLKALLESDDIV--VLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS----GEALLAALEAKPWLI---- 182 (310)
T ss_pred HHHHHHHHHHHHHhcccCCEE--EEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC----hHHHHHHHccCCcEE----
Confidence 4445555555555332 2233 3455 35677889999999999999999999873 345667777775543
Q ss_pred cccHHHHHHHhcC
Q 025169 144 CFEEEEWRKLKSS 156 (257)
Q Consensus 144 ~l~~~~~~~l~~~ 156 (257)
-.+.++++.+..+
T Consensus 183 KPN~~EL~~~~g~ 195 (310)
T COG1105 183 KPNREELEALFGR 195 (310)
T ss_pred ecCHHHHHHHhCC
Confidence 2345566665443
No 367
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=40.36 E-value=2.2e+02 Score=23.91 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=44.8
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHH-hcCC--cEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSML-DFLP--QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l-~lg~--~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.++++..++..-.++.|. |.......+...+ ..+. ...-+|. .++..+++++..+ .++|+..-
T Consensus 194 ~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~--~i~ps~~e------ 263 (348)
T cd03820 194 DLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASI--FVLTSRFE------ 263 (348)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCE--EEeCcccc------
Confidence 345555555554444445554 3222223333322 2332 2233343 4666777777654 44564321
Q ss_pred CCCcccHHHHHhcCCCEEecCCCC
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDS 198 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~ 198 (257)
+++ ..+.+.+..|+|| |+||.+
T Consensus 264 ~~~-~~~~Ea~a~G~Pv-i~~~~~ 285 (348)
T cd03820 264 GFP-MVLLEAMAFGLPV-ISFDCP 285 (348)
T ss_pred ccC-HHHHHHHHcCCCE-EEecCC
Confidence 112 3588999999998 566643
No 368
>PRK06267 hypothetical protein; Provisional
Probab=40.14 E-value=2.1e+02 Score=26.07 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=66.1
Q ss_pred ChhcHHHHHHHHHHcCCceeee----cCCCCCHhhHHHHH----hcCCcEEe-------eccc------cc-HHHHHHHh
Q 025169 97 EWTTFLPALKFAREQGLQITLH----CGEIPNKEEIQSML----DFLPQRIG-------HACC------FE-EEEWRKLK 154 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~H----a~E~~~~~~i~~~l----~lg~~ri~-------Hg~~------l~-~~~~~~l~ 154 (257)
+.+...+.++.+++.|+++..| .+|+ .+++.+.+ +++++.+. -|+. ++ .+.++.++
T Consensus 151 s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt--~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia 228 (350)
T PRK06267 151 PLDKIKEMLLKAKDLGLKTGITIILGLGET--EDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVS 228 (350)
T ss_pred CHHHHHHHHHHHHHcCCeeeeeEEEeCCCC--HHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHH
Confidence 4566778889999999996666 3565 33433322 25665431 1221 12 34566666
Q ss_pred cCCCcEEecccccceeccccCCCcccHHHHHhcCCCEE----ecCCCCCCCCCChHHHHHHHHHhC
Q 025169 155 SSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLV----LCTDDSGVFSTSVSREYDLAASAF 216 (257)
Q Consensus 155 ~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~----lgTD~~~~~~~~l~~E~~~a~~~~ 216 (257)
-..+. .|..+...++..+ ...++..++..|+++. +-.|-....|.+.-++++..-...
T Consensus 229 ~~Rl~---lP~~~I~~~~~~~-~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~~~~~~~~ 290 (350)
T PRK06267 229 SVRLN---FPKIKIITGTWVD-KLTNIGPLIMSGSNVITKFPLFSMYGTKEGKRVENEIRWTGREL 290 (350)
T ss_pred HHHHH---CCCCCcchhhHhH-hcchhhHHhhcCcceeeccchhccCcccCCCCHHHHHHHhhhhh
Confidence 55543 3655553333211 1134445566999887 666666667778888888775543
No 369
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.09 E-value=2.2e+02 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=21.8
Q ss_pred ceEEEecc-CCCCCCChhcHHHHHHHHHHcCC--ceeeec
Q 025169 83 GVVGIDLS-GNPTKGEWTTFLPALKFAREQGL--QITLHC 119 (257)
Q Consensus 83 ~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl--~v~~Ha 119 (257)
++..+-+. |+|...+...+.++++.+++.+. .+.+|.
T Consensus 136 ~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~T 175 (321)
T TIGR03822 136 EIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHT 175 (321)
T ss_pred CccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeC
Confidence 34444455 45555566778888888877652 245553
No 370
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.97 E-value=3.1e+02 Score=25.46 Aligned_cols=160 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred cCCCchhhhhhHhhcccCCCcE--------------EEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCC
Q 025169 32 RRPVNTKNMNDACNGTRGKKIY--------------VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE 97 (257)
Q Consensus 32 ~~~~~~~~~~~~~~a~~~~gir--------------~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~ 97 (257)
+||+..|.++.+..+.+..+-+ +.=+.=+--..+-......++...-..++ -|++++.-..+.|
T Consensus 133 RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~--~g~~is~R~ITVS 210 (371)
T PRK14461 133 RNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDP--QGFNLGARSMTVS 210 (371)
T ss_pred cCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCc--cccCcCCCceEEE
Q ss_pred h-hcHHHHHHHHHHc---CCceeeecCCCC------------CHhhHHHHHh----cCCcEE------eecccccHHHHH
Q 025169 98 W-TTFLPALKFAREQ---GLQITLHCGEIP------------NKEEIQSMLD----FLPQRI------GHACCFEEEEWR 151 (257)
Q Consensus 98 ~-~~~~~~~~~A~~~---gl~v~~Ha~E~~------------~~~~i~~~l~----lg~~ri------~Hg~~l~~~~~~ 151 (257)
. .....+.++|++. +|-+..|+.-.. +-+++.+++. -.-.|| --|+.-++++.+
T Consensus 211 T~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~ 290 (371)
T PRK14461 211 TVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAA 290 (371)
T ss_pred eecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHH
Q ss_pred HHhc--CCC-----------cEEecccccceeccccCCCcccHHH-HHhcCCCEEe
Q 025169 152 KLKS--SKI-----------PVEICLTSNIRTETISSLDIHHFVD-LYKAQHPLVL 193 (257)
Q Consensus 152 ~l~~--~~i-----------~v~~cP~SN~~l~~~~~~~~~pi~~-l~~~Gv~v~l 193 (257)
.|++ +|. .+-++|.........+.-...-|.+ |.++||+|++
T Consensus 291 ~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vti 346 (371)
T PRK14461 291 ALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTV 346 (371)
T ss_pred HHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEE
No 371
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=39.92 E-value=1.4e+02 Score=25.21 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=35.7
Q ss_pred EEEeeCCC------CHHH---HHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 57 LLSIDRRE------TTEA---AMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 57 i~~~~r~~------~~e~---~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++|+.|.+ +.++ ..+-+++.+++..+|.|=-.|..+ .....+..+.+.+.++ ++|||+|-+
T Consensus 62 ~ycMiRpR~GDFvYsd~Em~a~~~Dv~llk~~GAdGfVFGaLt~d-gsid~~~C~si~~~~r--plPVTFHRA 131 (255)
T KOG4013|consen 62 LYCMIRPRAGDFVYSDDEMAANMEDVELLKKAGADGFVFGALTSD-GSIDRTSCQSIIETAR--PLPVTFHRA 131 (255)
T ss_pred eEEEEecCCCCcccchHHHHHHHHHHHHHHHcCCCceEEeecCCC-CCcCHHHHHHHHHhcC--CCceeeeee
Confidence 46777743 1222 356677888887776432123221 1224456677777665 999999965
No 372
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=39.90 E-value=59 Score=24.32 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=39.0
Q ss_pred CHhhHHHHHhcC-CcE--Eeec---ccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEE
Q 025169 124 NKEEIQSMLDFL-PQR--IGHA---CCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLV 192 (257)
Q Consensus 124 ~~~~i~~~l~lg-~~r--i~Hg---~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~ 192 (257)
..+++...+... ++. ||-| ..++++..+.+.++||.+++-+|.+.. --+..|...|=+|+
T Consensus 40 ~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAc---------rTyNiL~~EgR~Va 105 (109)
T cd00248 40 DPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAAC---------RTYNVLLSEGRRVA 105 (109)
T ss_pred CHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHH---------HHHHHHHhCCcceE
Confidence 345555555555 654 4544 356899999999999999998887542 12445555555554
No 373
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=39.67 E-value=1.3e+02 Score=25.99 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=33.7
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
.+.++++.+..++.|++|..-.. +.++.+..+.+.|++++.
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiD--P~~~qi~~A~~~GAd~VE 149 (237)
T TIGR00559 109 KDKLCELVKRFHAAGIEVSLFID--ADKDQISAAAEVGADRIE 149 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEE
Confidence 36688889999999999999873 456778888889999875
No 374
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.64 E-value=2.4e+02 Score=25.09 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.5
Q ss_pred cccHHHHHHHh
Q 025169 144 CFEEEEWRKLK 154 (257)
Q Consensus 144 ~l~~~~~~~l~ 154 (257)
.++++.+..|+
T Consensus 150 ~l~~~~l~~L~ 160 (309)
T cd00952 150 DFPRAAWAELA 160 (309)
T ss_pred CCCHHHHHHHh
Confidence 34455555554
No 375
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=39.61 E-value=2.4e+02 Score=24.09 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCCCceEEEecc-CC---CCCCChhcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCCcEE-eecc
Q 025169 70 METVKLALEMRDLGVVGIDLS-GN---PTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI-GHAC 143 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~l~-g~---~~~~~~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg~ 143 (257)
.+.++...+...+ .+-+|+- |. ..++.|.. ++..|+. .+++.+|.-=......+.+..+.|+++| -|.-
T Consensus 19 ~~el~~~~~agad-~iH~DVMDghFVPNiTfGp~~----v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 19 GEELKALEAAGAD-LIHIDVMDGHFVPNITFGPPV----VKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred HHHHHHHHHcCCC-EEEEeccCCCcCCCcccCHHH----HHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEec
Confidence 3444444443333 5666653 31 12333433 3334444 6999999864433456666777899986 4765
Q ss_pred cc--cHHHHHHHhcCC--CcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHH-------HHHH
Q 025169 144 CF--EEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE-------YDLA 212 (257)
Q Consensus 144 ~l--~~~~~~~l~~~~--i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E-------~~~a 212 (257)
.- -.+.++++++.| ..+++||..... .+..+++.==-|.+=|=+|+..|..+..+ .+..
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~----------~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~ 163 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATPLE----------ALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAM 163 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCCHH----------HHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHH
Confidence 21 246789999887 566889976432 23444444334666666777555444322 2222
Q ss_pred HHh---------CCCCHHHHHHHHHHHHH------HcCCChHHHH
Q 025169 213 ASA---------FSLGRREMFQLAKSAVK------FIFANGRVKE 242 (257)
Q Consensus 213 ~~~---------~~ls~~~v~~~~~n~~~------~~~~~~~~k~ 242 (257)
... -|++.+.+.++...|+. +.|-+++.++
T Consensus 164 ~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~ 208 (220)
T COG0036 164 IDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKA 208 (220)
T ss_pred hcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHH
Confidence 220 25677777777766654 4455555333
No 376
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=39.55 E-value=1.8e+02 Score=25.31 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=37.4
Q ss_pred cccCCCchhhhhhHhhcccCCCcEEEEEEEeeC---CCCHHHHHHHHHHHHhhCCCce-EEEeccCCCCCCChhcHHHHH
Q 025169 30 DVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR---RETTEAAMETVKLALEMRDLGV-VGIDLSGNPTKGEWTTFLPAL 105 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r---~~~~e~~~~~~~~~~~~~~~~v-vg~~l~g~~~~~~~~~~~~~~ 105 (257)
+.+|.=-++.+.+.++-..+.|+...++.+..- ..+.++=.+.++.+.+...+.+ +-++..+ .+.++-.+..
T Consensus 13 ~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~----~~~~~~~~~a 88 (284)
T cd00950 13 KDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS----NNTAEAIELT 88 (284)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC----ccHHHHHHHH
Confidence 444422334555555555556777666654442 2345555555555544432211 1111111 1334455555
Q ss_pred HHHHHcCCc
Q 025169 106 KFAREQGLQ 114 (257)
Q Consensus 106 ~~A~~~gl~ 114 (257)
+.|++.|..
T Consensus 89 ~~a~~~G~d 97 (284)
T cd00950 89 KRAEKAGAD 97 (284)
T ss_pred HHHHHcCCC
Confidence 666666644
No 377
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=39.29 E-value=2.6e+02 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=28.1
Q ss_pred cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC
Q 025169 146 EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 146 ~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
.++..++++...+. ++|+...- .++ ..+.+.+..|+|| |+||.++
T Consensus 254 ~~~~~~~l~~ad~~--i~ps~~~e-----~~~-~~l~EA~a~G~Pv-I~~~~~~ 298 (355)
T cd03819 254 CSDMPAAYALADIV--VSASTEPE-----AFG-RTAVEAQAMGRPV-IASDHGG 298 (355)
T ss_pred cccHHHHHHhCCEE--EecCCCCC-----CCc-hHHHHHHhcCCCE-EEcCCCC
Confidence 45667777776654 45652211 112 2578999999999 6788654
No 378
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=39.23 E-value=2.8e+02 Score=24.63 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred CCchhhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc-----------CC--C-CCCChh
Q 025169 34 PVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS-----------GN--P-TKGEWT 99 (257)
Q Consensus 34 ~~~~~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~-----------g~--~-~~~~~~ 99 (257)
++.+|.++.+-+-..-..+- ++.......++....+.++...+ .|+.|+.+- +. + ...|.+
T Consensus 61 ~~~~e~~~~~~~I~~a~~~P--v~~D~d~Gg~~~~v~r~V~~l~~---aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~e 135 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKP--IILDGDTGGNFEHFRRLVRKLER---RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVE 135 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCC--EEEecCCCCCHHHHHHHHHHHHH---cCCeEEEEeccCCCccccccCCCCcccccCHH
Confidence 55666655432222211111 33444433345566666655443 467777661 11 1 123666
Q ss_pred cHHHHHHHHHHc----CCceeee----cCCCCCHhhHH---HHHhcCCcE-EeecccccHHHHHHHhcC------CCcEE
Q 025169 100 TFLPALKFAREQ----GLQITLH----CGEIPNKEEIQ---SMLDFLPQR-IGHACCFEEEEWRKLKSS------KIPVE 161 (257)
Q Consensus 100 ~~~~~~~~A~~~----gl~v~~H----a~E~~~~~~i~---~~l~lg~~r-i~Hg~~l~~~~~~~l~~~------~i~v~ 161 (257)
++.+-++.|++. ++.|... .....-.+.++ ...+.|+|- ..++...+++++..+.++ .+++.
T Consensus 136 e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 136 EFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 666666666553 3455454 11111112232 333479985 466544577777666543 23443
Q ss_pred ecccccceeccccCCCcccHHHHHhcCCCEEe
Q 025169 162 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVL 193 (257)
Q Consensus 162 ~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~l 193 (257)
..|+. .+..++.+|.+.|++..+
T Consensus 216 ~~~~~---------~~~~~~~eL~~lG~~~v~ 238 (285)
T TIGR02320 216 IVPTS---------YYTTPTDEFRDAGISVVI 238 (285)
T ss_pred EecCC---------CCCCCHHHHHHcCCCEEE
Confidence 33321 133478999999998743
No 379
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=39.01 E-value=1.7e+02 Score=24.36 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=40.7
Q ss_pred HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceee
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
+.+++++.|+...++ .....+++.-.+.++.+...+.++++ +... ++..+.+.++.+++.|+|+..
T Consensus 20 ~~~~a~~~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~~d~Ii---v~~~----~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 20 AKAAAKELGYEVEIV--FDAQNDPEEQIEQIEQAISQGVDGII---VSPV----DPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHTCEEEEE--EESTTTHHHHHHHHHHHHHTTESEEE---EESS----STTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCEEEEe--CCCCCCHHHHHHHHHHHHHhcCCEEE---ecCC----CHHHHHHHHHHHhhcCceEEE
Confidence 335677788888776 34445565556666666654444333 2221 224566778889999998776
No 380
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=38.59 E-value=1.9e+02 Score=22.49 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=63.6
Q ss_pred EEEeccCCCCCCChhcHHHHHHHHHHc--CCceeeecCCCC-CHhhHHHHHhcCCcEEeecccc-cHHHHHHHhcCCCcE
Q 025169 85 VGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIP-NKEEIQSMLDFLPQRIGHACCF-EEEEWRKLKSSKIPV 160 (257)
Q Consensus 85 vg~~l~g~~~~~~~~~~~~~~~~A~~~--gl~v~~Ha~E~~-~~~~i~~~l~lg~~ri~Hg~~l-~~~~~~~l~~~~i~v 160 (257)
..+-+.|.+....+ .+..+++.+++. ++.+.++..-.. ..+.+....+.|..++..++.. +++..+.+...+..
T Consensus 46 ~~i~~~ggep~~~~-~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~- 123 (204)
T cd01335 46 EVVILTGGEPLLYP-ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGES- 123 (204)
T ss_pred eEEEEeCCcCCccH-hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcC-
Confidence 33334443333344 788888888887 888888875332 3444555556788999988876 55555555411110
Q ss_pred EecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC--CChHHHHHHHHH
Q 025169 161 EICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS--TSVSREYDLAAS 214 (257)
Q Consensus 161 ~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~--~~l~~E~~~a~~ 214 (257)
... ....+..+.+.|+.+.+..=-..... .++.+.+.....
T Consensus 124 -----~~~--------~~~~i~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~ 166 (204)
T cd01335 124 -----FKE--------RLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAE 166 (204)
T ss_pred -----HHH--------HHHHHHHHHHcCCCceEEEEEecCCChhHHHHHHHHHHHh
Confidence 000 12346777777777665544211111 245555555544
No 381
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.49 E-value=2.4e+02 Score=23.77 Aligned_cols=150 Identities=9% Similarity=-0.034 Sum_probs=77.9
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
.+.|..+++++.+..+...+..=+ ++=+.+. ++.-++.+-+..+++. .+.+=+|--...+.++.+++.|++-
T Consensus 19 aV~r~~~~~~a~~i~~al~~~Gi~-~iEitl~------~~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~F 90 (212)
T PRK05718 19 PVIVINKLEDAVPLAKALVAGGLP-VLEVTLR------TPAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQF 90 (212)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCC-EEEEecC------CccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCCE
Confidence 456767777777776655443111 2222222 1222333323333333 3444444444556677778888876
Q ss_pred EeecccccHHHHHHHhcCCCcEEecccccceeccccCCCccc--HHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHh-
Q 025169 139 IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH--FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA- 215 (257)
Q Consensus 139 i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p--i~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~- 215 (257)
+.= -.++++.++...+.++.+. |.. ..| +...++.|..+.-=-|.....+.+..+.++-....
T Consensus 91 ivs-P~~~~~vi~~a~~~~i~~i--PG~-----------~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~ 156 (212)
T PRK05718 91 IVS-PGLTPPLLKAAQEGPIPLI--PGV-----------STPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPDV 156 (212)
T ss_pred EEC-CCCCHHHHHHHHHcCCCEe--CCC-----------CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCCC
Confidence 542 2346678888887777653 311 123 77888999875433332111123444444433221
Q ss_pred -----CCCCHHHHHHHHHHH
Q 025169 216 -----FSLGRREMFQLAKSA 230 (257)
Q Consensus 216 -----~~ls~~~v~~~~~n~ 230 (257)
-|++.+.+.+....+
T Consensus 157 ~~~ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 157 RFCPTGGISPANYRDYLALP 176 (212)
T ss_pred eEEEeCCCCHHHHHHHHhCC
Confidence 278888877765544
No 382
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=38.30 E-value=1.5e+02 Score=27.86 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=44.7
Q ss_pred HhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 43 ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 43 ~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
+-++.+++|-+......+.. .++++..+..+.+.+..... .+.+...| ...++.+.+.+++.+++++.|-+
T Consensus 190 ~~~a~~eTG~~~~y~~NiT~-~~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~ih~HrA 261 (414)
T cd08206 190 MDKAEAETGEAKGHYLNITA-DTPEEMIKRAEFAKELGSVIVMVDGVTAG------WTAIQSARRWCPDNGLALHAHRA 261 (414)
T ss_pred HHHHHHhhCCcceEEeccCC-CcHHHHHHHHHHHHHhCCcEEEEeeeccc------HHHHHHHHHhccccCeEEEEccc
Confidence 33778889988777776663 23778888888777655432 22222222 23356565555568999999954
No 383
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=38.18 E-value=2.3e+02 Score=26.55 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=37.3
Q ss_pred hcccCCCcEEEEEEEeeC-----------CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcC
Q 025169 45 NGTRGKKIYVRLLLSIDR-----------RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG 112 (257)
Q Consensus 45 ~a~~~~gir~~li~~~~r-----------~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~g 112 (257)
++.++.|+. |+.+++.. ..+.+.+.+.++.+.+..- .-+-+||-..-+..+.+.+...++.|.+.+
T Consensus 141 ~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~-~~in~DLIyglP~QT~~~~~~~l~~a~~l~ 217 (416)
T COG0635 141 KALKEAGVN-RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGF-TSINIDLIYGLPGQTLESLKEDLEQALELG 217 (416)
T ss_pred HHHHHcCCC-EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 455666766 66665543 2344555555555554221 145666653333456677777777777766
No 384
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.18 E-value=2.4e+02 Score=23.70 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=45.5
Q ss_pred CceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhcC
Q 025169 82 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS 156 (257)
Q Consensus 82 ~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~~ 156 (257)
+.+.-.++.+... .....+..+.+.+++.++++.+|-| ....+.++.++.+|++++.=|..+ +++.+..+.+.
T Consensus 47 ~~l~i~dl~~~~~-~~~~~~~~i~~i~~~~~~~l~v~GG-i~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 47 ETLHLVDLDGAFE-GERKNAEAIEKIIEAVGVPVQLGGG-IRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEE 121 (241)
T ss_pred CEEEEEechhhhc-CCcccHHHHHHHHHHcCCcEEEcCC-cCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHH
Confidence 3344455554221 2234566666778888999999754 335667778888999986545433 56666665544
No 385
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=38.09 E-value=3.8e+02 Score=26.43 Aligned_cols=99 Identities=14% Similarity=-0.011 Sum_probs=61.3
Q ss_pred hcCCcEEeeccc-c--cHHHHHHHhcCCCcEEecccccc-eeccccCCCcccHHHHHhcCCCEEecCCCCCCCCCChHHH
Q 025169 133 DFLPQRIGHACC-F--EEEEWRKLKSSKIPVEICLTSNI-RTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE 208 (257)
Q Consensus 133 ~lg~~ri~Hg~~-l--~~~~~~~l~~~~i~v~~cP~SN~-~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~E 208 (257)
+.|++-|--|+- | +++-.+.+.+.|+.+.=-|-+-+ .+|. .+.-=+.|.++|||+.-|+.++... ..+
T Consensus 72 ~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGd----K~~AK~l~~~AgVp~VPG~~g~~qd----~~~ 143 (645)
T COG4770 72 RTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGD----KIAAKKLAAEAGVPTVPGYHGPIQD----AAE 143 (645)
T ss_pred HhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhcc----HHHHHHHHHHcCCCccCCCCCcccC----HHH
Confidence 468888766663 3 56778888888876643222221 1221 2223345778999999999987532 244
Q ss_pred HHHHHHhCC-------------------CCHHH---HHHHHHHHHHHcCCChH
Q 025169 209 YDLAASAFS-------------------LGRRE---MFQLAKSAVKFIFANGR 239 (257)
Q Consensus 209 ~~~a~~~~~-------------------ls~~~---v~~~~~n~~~~~~~~~~ 239 (257)
+...+...| .+++| .++.+++-++++|-++.
T Consensus 144 ~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddr 196 (645)
T COG4770 144 LVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDR 196 (645)
T ss_pred HHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCce
Confidence 444444332 35555 45568999999998773
No 386
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.86 E-value=2.2e+02 Score=24.18 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=41.0
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE-EeecccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR-IGHACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r-i~Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.|++.|..+.+..... ....+...+..+++- |..+...++..++.+++.|++++.+
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASS-EDSDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEecCcc-HHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 455666777899998888876532 222333444456764 3344433456788888899998876
No 387
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=37.85 E-value=2.7e+02 Score=24.20 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=39.4
Q ss_pred hhcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhc--CCcEEeecccc---cHHHHHHHhcCCCcEEeccc
Q 025169 98 WTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF--LPQRIGHACCF---EEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 98 ~~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~l--g~~ri~Hg~~l---~~~~~~~l~~~~i~v~~cP~ 165 (257)
++.+.++++..++. ++|+.+-. ..++.+..+++. |++.|---... .++.++++++.|++++..+.
T Consensus 54 ~~r~~~~v~~l~~~~~~plsIDT---~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 54 PETMEWLVETVQEVVDVPLCIDS---PNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeC---CCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 34566677766553 78877654 345566677776 76554322221 34557777888887775543
No 388
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=37.76 E-value=1.7e+02 Score=25.47 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=48.4
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHH-hcCC--cEEeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSML-DFLP--QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l-~lg~--~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.+++...++.+-.+.++. |.......+...+ ..+. ...-+|. .++..++++...+. ++|+..- .
T Consensus 208 ~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~--v~ps~~E---~-- 278 (358)
T cd03812 208 EFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVF--LFPSLYE---G-- 278 (358)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEE--Eeccccc---C--
Confidence 456666666665544455554 4332223333333 2333 2334454 44556677766554 5675431 1
Q ss_pred CCCcccHHHHHhcCCCEEecCCCCC
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
++ ..+-+.+..|+|| |+||.++
T Consensus 279 -~~-~~~lEAma~G~Pv-I~s~~~~ 300 (358)
T cd03812 279 -LP-LVLIEAQASGLPC-ILSDTIT 300 (358)
T ss_pred -CC-HHHHHHHHhCCCE-EEEcCCc
Confidence 12 3577899999999 6688654
No 389
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=37.72 E-value=1.5e+02 Score=25.61 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=33.9
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
.+.++++.+..++.|+++..-.. ++++.+..+.+.|++++.
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiD--Pd~~qi~~A~~~GAd~VE 149 (234)
T cd00003 109 AEKLKPIIERLKDAGIRVSLFID--PDPEQIEAAKEVGADRVE 149 (234)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEE
Confidence 46788899999999999999874 456778888889999875
No 390
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=37.62 E-value=2.4e+02 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=6.3
Q ss_pred hcHHHHHHHHHHcC
Q 025169 99 TTFLPALKFAREQG 112 (257)
Q Consensus 99 ~~~~~~~~~A~~~g 112 (257)
+.+..+.+.|.+.|
T Consensus 131 ~~i~~a~ria~e~G 144 (203)
T cd00959 131 EEIIKACEIAIEAG 144 (203)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444443
No 391
>PRK04527 argininosuccinate synthase; Provisional
Probab=37.42 E-value=3.5e+02 Score=25.32 Aligned_cols=153 Identities=13% Similarity=0.021 Sum_probs=82.6
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCC--CCHh----hHHHHH-hcCCc--EEeeccc---ccHHHHHHHhcCCCcEEecc-
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEI--PNKE----EIQSML-DFLPQ--RIGHACC---FEEEEWRKLKSSKIPVEICL- 164 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~--~~~~----~i~~~l-~lg~~--ri~Hg~~---l~~~~~~~l~~~~i~v~~cP- 164 (257)
+-.++.+++.|++.|....+|-.-. .+.. .+ .++ ++++- ....+.. .-++++++++++||++...+
T Consensus 95 ~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~-~Al~el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~~~ 173 (400)
T PRK04527 95 YLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAV-KALGDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQK 173 (400)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHH-HHhhcCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCCCC
Confidence 4468889999999999999995421 1111 12 222 33321 1122322 34678999999999986432
Q ss_pred -c---ccceecc-----ccCCCccc-------------------HHHHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhC
Q 025169 165 -T---SNIRTET-----ISSLDIHH-------------------FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF 216 (257)
Q Consensus 165 -~---SN~~l~~-----~~~~~~~p-------------------i~~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~ 216 (257)
- .|++-.+ ..++..+| +.-=+++|+||+|+ +-.+...+++..+...+..+
T Consensus 174 ~yS~D~Nlw~~s~E~g~Ldp~~~~~~~~~~~t~~p~~ap~~p~~v~i~Fe~G~pv~ln--G~~~~~~~li~~lN~i~g~~ 251 (400)
T PRK04527 174 AYTINENLLGVTMSGGEIDRWEAPGEGARGWCAPRSAWPTEALTVTIKFVEGEAVALD--GKPLPGAQILAKLNKLFAQY 251 (400)
T ss_pred CcccccchhheecccCCCCcCcCCCHHHHHhcCCHhHCCCCCeEEEEEEEccEEEEEC--CEeCCHHHHHHHHHHHHhhc
Confidence 1 2333211 11111111 11114789999994 43333346666666665544
Q ss_pred CC---------------------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 025169 217 SL---------------------GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 254 (257)
Q Consensus 217 ~l---------------------s~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~ 254 (257)
|+ +...++-.+...++.+-++.++ ..+...+...+.+
T Consensus 252 GvGr~d~vEnr~vG~KsR~vyEaP~~~iL~~Ah~~LE~~~l~r~~-~~~k~~~~~~~a~ 309 (400)
T PRK04527 252 GVGRGVYTGDTVIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQ-NRFKPDVARKWVE 309 (400)
T ss_pred ccCceeeecccccccccceeccChHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHH
Confidence 32 3455666677777777776643 2334444444443
No 392
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.11 E-value=2.3e+02 Score=24.50 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=40.3
Q ss_pred cccCCCchhhhhhHhhcccCCCcEEEEEEEeeCC---CCHHHHHHHHHHHHhhCCCc---eEEEeccCCCCCCChhcHHH
Q 025169 30 DVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR---ETTEAAMETVKLALEMRDLG---VVGIDLSGNPTKGEWTTFLP 103 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~---~~~e~~~~~~~~~~~~~~~~---vvg~~l~g~~~~~~~~~~~~ 103 (257)
+.+|.--.+.+++.++-..+.|+...++.+..-. .+.++-.+.++.+.+...+. ++|+ .+ .+..+..+
T Consensus 10 ~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv--~~----~~~~~~i~ 83 (281)
T cd00408 10 TADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV--GA----NSTREAIE 83 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec--CC----ccHHHHHH
Confidence 4444333455556665555567777776655432 35566566666555543321 2232 11 12344555
Q ss_pred HHHHHHHcCCc
Q 025169 104 ALKFAREQGLQ 114 (257)
Q Consensus 104 ~~~~A~~~gl~ 114 (257)
..+.|.+.|.-
T Consensus 84 ~a~~a~~~Gad 94 (281)
T cd00408 84 LARHAEEAGAD 94 (281)
T ss_pred HHHHHHHcCCC
Confidence 55666666654
No 393
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=36.49 E-value=1.3e+02 Score=26.14 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=49.6
Q ss_pred eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhc--------CC--cEEeeccc----c--cH
Q 025169 84 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDF--------LP--QRIGHACC----F--EE 147 (257)
Q Consensus 84 vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l--------g~--~ri~Hg~~----l--~~ 147 (257)
.-|+-..|.|.+.-.+.+.++++.||+.|+++.++..-...+......+.+ .+ +.. |.-. . .-
T Consensus 84 ~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~-y~~~tg~~~~~vl 162 (260)
T COG1180 84 GGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDEL-YRKLTGADNEPVL 162 (260)
T ss_pred CCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHH-HHHHhCCCcHHHH
Confidence 456666777777777889999999999999999997544334333222221 11 111 3211 1 12
Q ss_pred HHHHHHhcCCCcEEec
Q 025169 148 EEWRKLKSSKIPVEIC 163 (257)
Q Consensus 148 ~~~~~l~~~~i~v~~c 163 (257)
+-++++++.|+.+++.
T Consensus 163 ~~~~~l~~~g~~ve~r 178 (260)
T COG1180 163 ENLELLADLGVHVEIR 178 (260)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 4577888888888754
No 394
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=36.38 E-value=1.4e+02 Score=26.43 Aligned_cols=78 Identities=19% Similarity=0.102 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEeccCCCCCC--Ch-hcHHHHHHHHHHc-CCceeeecCCCCCHhhHHHHHhcCCcEE
Q 025169 65 TTEAAMETVKLALEMRDL-GVVGIDLSGNPTKG--EW-TTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI 139 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~--~~-~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~~i~~~l~lg~~ri 139 (257)
+|+++.+.++.. .-+ .-+.+|-++..+.. .| -.|..+-+..+.. ++|+.+|=|-+.+.+.++.++..|..-|
T Consensus 156 dP~~a~~Fv~~T---gvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 156 DPEEAKEFVEET---GVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SHHHHHHHHHHH---TTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHh---CCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 466665555432 222 23455544334443 33 2355566666666 9999999776556678888898887666
Q ss_pred eecccc
Q 025169 140 GHACCF 145 (257)
Q Consensus 140 ~Hg~~l 145 (257)
-=++.+
T Consensus 233 Ni~T~~ 238 (287)
T PF01116_consen 233 NIGTEL 238 (287)
T ss_dssp EESHHH
T ss_pred EEehHH
Confidence 544433
No 395
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.16 E-value=3e+02 Score=25.40 Aligned_cols=86 Identities=12% Similarity=-0.026 Sum_probs=47.6
Q ss_pred CCCchhhhhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCC-ceEEEecc-CCCCCC-ChhcHHHHHHH
Q 025169 33 RPVNTKNMNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDL-GVVGIDLS-GNPTKG-EWTTFLPALKF 107 (257)
Q Consensus 33 ~~~~~~~~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~-~vvg~~l~-g~~~~~-~~~~~~~~~~~ 107 (257)
+.+++++++.+.+..++.|.++.+=+.+.+. .+.+++.+.++++..+.-. .++-+... +.++.. +.+.+.+..+.
T Consensus 258 ~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~ 337 (368)
T PRK14456 258 DYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDR 337 (368)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHH
Confidence 4566677665554455566554333333332 2567788888887665221 12222211 223332 34556666777
Q ss_pred HHHcCCceeee
Q 025169 108 AREQGLQITLH 118 (257)
Q Consensus 108 A~~~gl~v~~H 118 (257)
.+++|+.+++=
T Consensus 338 L~~~Gi~vtvR 348 (368)
T PRK14456 338 LLDAGLQVTVR 348 (368)
T ss_pred HHHCCCcEEee
Confidence 78889998884
No 396
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=36.03 E-value=3.2e+02 Score=24.45 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=31.9
Q ss_pred ChhcHHHHHHHHHHcCCceeeec-----CCCCCH--hhHHHHHhcCCcEE-eecccc
Q 025169 97 EWTTFLPALKFAREQGLQITLHC-----GEIPNK--EEIQSMLDFLPQRI-GHACCF 145 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha-----~E~~~~--~~i~~~l~lg~~ri-~Hg~~l 145 (257)
+...+.++...+|++|++|..|. +|+... +.++....+|++-| -|..++
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~Lhv 222 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHV 222 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEE
Confidence 44678888999999999999997 444211 12233334677654 466665
No 397
>PRK06801 hypothetical protein; Provisional
Probab=35.99 E-value=3.1e+02 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=12.2
Q ss_pred cEEeecc-cccHHHHHHHhcCCCc
Q 025169 137 QRIGHAC-CFEEEEWRKLKSSKIP 159 (257)
Q Consensus 137 ~ri~Hg~-~l~~~~~~~l~~~~i~ 159 (257)
-..-||- -++++++..+.+.|+.
T Consensus 205 PLVlHGGSgi~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 205 PLVLHGGSGISDADFRRAIELGIH 228 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCc
Confidence 3455554 2455556666666654
No 398
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=35.87 E-value=2.3e+02 Score=22.75 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcC-CcEEeec
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHA 142 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg-~~ri~Hg 142 (257)
.++++..+.++ +... .+.++.+.|.|+...++ +.++++.+++.|+.+.+...=. ..+.+...++.| .+.+.=.
T Consensus 47 ~~~~~i~~~i~---~~~~-~~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~-~~~~l~~l~~~g~~~~v~is 120 (191)
T TIGR02495 47 IEVEFLLEFLR---SRQG-LIDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGS-NPRVLEELLEEGLVDYVAMD 120 (191)
T ss_pred CCHHHHHHHHH---HhcC-CCCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCC-CHHHHHHHHhcCCCcEEEEe
Confidence 34555444443 3222 23345556655555554 8888899999998777765322 233344444455 3444212
Q ss_pred ccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecC
Q 025169 143 CCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCT 195 (257)
Q Consensus 143 ~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgT 195 (257)
+..+++....+...+-... +.. ..-+..+.+.|+++.+.|
T Consensus 121 l~~~~~~~~~~~g~~~~~~-----~~~--------~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 121 VKAPPEKYPELYGLEKNGS-----NNI--------LKSLEILLRSGIPFELRT 160 (191)
T ss_pred ccCChHHHHHHHCCCCchH-----HHH--------HHHHHHHHHcCCCEEEEE
Confidence 2223343333321110100 000 123677788899888875
No 399
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=35.65 E-value=2.6e+02 Score=23.32 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=23.1
Q ss_pred eeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcE
Q 025169 115 ITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPV 160 (257)
Q Consensus 115 v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v 160 (257)
+.+=+|--.+.+.++.+++.|++-+.- -.++++.++...++++++
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA~FivS-P~~~~~v~~~~~~~~i~~ 104 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGAQFIVS-PGFDPEVIEYAREYGIPY 104 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT-SEEEE-SS--HHHHHHHHHHTSEE
T ss_pred CeeEEEeccCHHHHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCcc
Confidence 333444333455666677777765431 135677777777777664
No 400
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=35.52 E-value=1.9e+02 Score=27.02 Aligned_cols=70 Identities=9% Similarity=-0.064 Sum_probs=42.6
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++-++.+++|=+......+.. ++++..+..+.+.+...+. .+.+...| ...++.+.+. .+.+++++.|-+
T Consensus 181 a~~~a~~eTG~~~~ya~NiT~--~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~-~~~~lpIhaHra 251 (391)
T cd08209 181 VLQEVYEQTGRRTLYAVNLTG--PVFTLKEKARRLVEAGANALLFNVFAYG------LDVLEALASD-PEINVPIFAHPA 251 (391)
T ss_pred HHHHHHHhhCCcceEEEEcCC--CHHHHHHHHHHHHHhCCCEEEEeccccc------hHHHHHHHhc-CcCCcEEEecCC
Confidence 333778889988777777775 4788888888887765542 22222222 1224433332 256899999954
No 401
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=35.50 E-value=3e+02 Score=23.93 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=79.3
Q ss_pred EEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCCh--hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH
Q 025169 54 VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--TTFLPALKFAREQGLQITLHCGEIPNKEEIQSM 131 (257)
Q Consensus 54 ~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~--~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~ 131 (257)
..++....--.+.+++..+.+++++..+..++-+.+.+++.+.-| .+..++.+...+.|+.|..-+. .++.-.+..
T Consensus 63 ~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~--~D~v~akrL 140 (247)
T PF05690_consen 63 YTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT--DDPVLAKRL 140 (247)
T ss_dssp SEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHH
T ss_pred CEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCC--CCHHHHHHH
Confidence 456665555567889999999988877766889888888776432 2333334444456999888874 335445566
Q ss_pred HhcCCcE-------Eeecccc-cHHHHHHHh-cCCCcEEecccccceeccccCCCcccHHHHHhcCCC-EEecCCCCCCC
Q 025169 132 LDFLPQR-------IGHACCF-EEEEWRKLK-SSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDDSGVF 201 (257)
Q Consensus 132 l~lg~~r-------i~Hg~~l-~~~~~~~l~-~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~-v~lgTD~~~~~ 201 (257)
.+.|+.- ||-|--+ ++.-++.+. +.+++|.+-- -+|. -......++.|.- |-+||=-....
T Consensus 141 ~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA----GiG~-----pSdaa~AMElG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 141 EDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA----GIGT-----PSDAAQAMELGADAVLVNTAIAKAK 211 (247)
T ss_dssp HHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES-------S-----HHHHHHHHHTT-SEEEESHHHHTSS
T ss_pred HHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC----CCCC-----HHHHHHHHHcCCceeehhhHHhccC
Confidence 6677643 3333333 667777765 5577776532 2222 1246777787764 45554321111
Q ss_pred C-CChHHHHHHHHH
Q 025169 202 S-TSVSREYDLAAS 214 (257)
Q Consensus 202 ~-~~l~~E~~~a~~ 214 (257)
+ ..|.+-|+.+.+
T Consensus 212 dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 212 DPVAMARAFKLAVE 225 (247)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 2 345566666554
No 402
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.42 E-value=2.7e+02 Score=23.46 Aligned_cols=31 Identities=6% Similarity=0.195 Sum_probs=14.1
Q ss_pred CcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCC
Q 025169 51 KIYVRLLLSIDRRETTEAAMETVKLALEMRDL 82 (257)
Q Consensus 51 gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~ 82 (257)
|+..+.|+.... .+.++.....+.+.....+
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGAD 147 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGAD 147 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCC
Confidence 444444444433 3444444555555544443
No 403
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.41 E-value=2.9e+02 Score=25.51 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=51.9
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHH----H-hcCCc-EE--eecccccHHHHHHHhcCCCcEEeccccccee
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSM----L-DFLPQ-RI--GHACCFEEEEWRKLKSSKIPVEICLTSNIRT 170 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~----l-~lg~~-ri--~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l 170 (257)
+.++.+...++++|+|+.+-+|=.+ +..+.+. . +.|.+ ++ .||-.+.+..-+++. .|..+.+.++.+-..
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~n-p~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~-~g~~~~~l~~~~~l~ 135 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLN-PAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLA-EGETIRPLDTGPPLS 135 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCC-HHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHh-CCCCCccCCCCCCcc
Confidence 4677788888888999888876443 3333222 2 14443 33 345444444444444 333222222221100
Q ss_pred -------ccccCCCcccHHHHHhcCCCEEecC
Q 025169 171 -------ETISSLDIHHFVDLYKAQHPLVLCT 195 (257)
Q Consensus 171 -------~~~~~~~~~pi~~l~~~Gv~v~lgT 195 (257)
...--+|..||.+.++.|..|.|+-
T Consensus 136 ~~~~~~~~a~aylGa~pI~~AL~~GADIVI~G 167 (362)
T PF07287_consen 136 EWDDRIVSANAYLGAEPIVEALEAGADIVITG 167 (362)
T ss_pred hhccccceEEEecChHHHHHHHHcCCCEEEeC
Confidence 0000135689999999999999973
No 404
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=35.16 E-value=2.1e+02 Score=27.65 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=43.9
Q ss_pred hcccCCCc---EEEEEEEeeC-CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 45 NGTRGKKI---YVRLLLSIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 45 ~a~~~~gi---r~~li~~~~r-~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++++-.|+ +.+.+.+-.. ..+++..++.++...+-....+.-+..+|...++..+-+.++.+.|+++|+.+|+-++
T Consensus 224 kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA 303 (522)
T TIGR03799 224 KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAA 303 (522)
T ss_pred HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEch
Confidence 55566676 4444443221 2466666666654433222222222334544455566788889999999988777765
Q ss_pred CC
Q 025169 121 EI 122 (257)
Q Consensus 121 E~ 122 (257)
-.
T Consensus 304 ~g 305 (522)
T TIGR03799 304 WG 305 (522)
T ss_pred hh
Confidence 43
No 405
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=35.11 E-value=2.4e+02 Score=26.66 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=42.2
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|=+......+.. ++++..+..+.+.+..... .+.+...| |..+-.+++..+++++.|-
T Consensus 216 ~ai~~a~~eTG~~~~ya~NiT~--~~~em~~ra~~a~~~G~~~vmv~~~~~G---------~~al~~L~~~~~l~ihaHr 284 (424)
T cd08208 216 KARRRAEAETGVPKIYLANITD--EVDRLMELHDVAVRNGANALLINAMPVG---------LSAVRMLRKHAQVPLIAHF 284 (424)
T ss_pred HHHHHHHHhhCCcceEEEEccC--CHHHHHHHHHHHHHhCCCEEEEeeeccc---------HHHHHHHHhcCCCeEEecc
Confidence 3344778888987777766664 5788888888887765542 22222222 1222233445689999995
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 285 a 285 (424)
T cd08208 285 P 285 (424)
T ss_pred C
Confidence 3
No 406
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.08 E-value=3.1e+02 Score=23.93 Aligned_cols=62 Identities=8% Similarity=-0.161 Sum_probs=34.8
Q ss_pred EEEeeCCCCHHHHHHHHHHHHhhCCCceEE--EeccCCCCCC---ChhcHHHHHHHHHHcCCceeeecC
Q 025169 57 LLSIDRRETTEAAMETVKLALEMRDLGVVG--IDLSGNPTKG---EWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 57 i~~~~r~~~~e~~~~~~~~~~~~~~~~vvg--~~l~g~~~~~---~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
..|... +.+...++.+.+.+..-..+.| ++.--.++.+ ..+-++.+.+.+++.|+++..=..
T Consensus 21 GPC~vE--s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 21 GPCSIE--SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred ccCccC--CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeC
Confidence 344443 4566666666655544332333 1211123322 235688888999999999987654
No 407
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.99 E-value=2.9e+02 Score=23.58 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=56.9
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcE
Q 025169 59 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 138 (257)
Q Consensus 59 ~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~r 138 (257)
.+.|..+++++.+..+...+ .|+-.+-+.-.. ....+.++.+.+..++..=.+.+=+|--.+.+.++.+++.|++-
T Consensus 19 ~Vvr~~~~~~a~~~~~al~~---gGi~~iEiT~~t-p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 19 PVFYHADVEVAKKVIKACYD---GGARVFEFTNRG-DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred EEEEcCCHHHHHHHHHHHHH---CCCCEEEEeCCC-CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 44565667776666654432 222222221100 00122333333222221112455555444566777777788776
Q ss_pred EeecccccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 139 IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 139 i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
+. .-.++++.++..+++++++. |.. . .-.-+...++.|..
T Consensus 95 iV-sP~~~~~v~~~~~~~~i~~i--PG~------~---TpsEi~~A~~~Ga~ 134 (222)
T PRK07114 95 IV-TPLFNPDIAKVCNRRKVPYS--PGC------G---SLSEIGYAEELGCE 134 (222)
T ss_pred EE-CCCCCHHHHHHHHHcCCCEe--CCC------C---CHHHHHHHHHCCCC
Confidence 54 12357788888888887753 421 0 01125667777764
No 408
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=34.93 E-value=2.3e+02 Score=27.20 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=45.2
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCHHHH-HHHHHHHHhhCCCce-EEEeccC------CCCCCChhcHHHHHHHHHHc
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETTEAA-METVKLALEMRDLGV-VGIDLSG------NPTKGEWTTFLPALKFAREQ 111 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~e~~-~~~~~~~~~~~~~~v-vg~~l~g------~~~~~~~~~~~~~~~~A~~~ 111 (257)
+|++++..+..-.|..-+---.| |+.+ .+.++...+|.-..+ +|+.... .....+.+...++.+++|+.
T Consensus 170 le~a~~~ne~~~~r~vgitiETR---PD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~ 246 (515)
T COG1243 170 LEEAQRKNETAELRCVGITIETR---PDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDA 246 (515)
T ss_pred HHHHHHhhcccccceeEEEEecC---ccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 55555555555455444422233 3333 556677777765421 3333211 12234668888999999999
Q ss_pred CCceeeec
Q 025169 112 GLQITLHC 119 (257)
Q Consensus 112 gl~v~~Ha 119 (257)
|+++..|.
T Consensus 247 GfKv~~Hi 254 (515)
T COG1243 247 GFKVGYHI 254 (515)
T ss_pred CcEEEEEe
Confidence 99999997
No 409
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=34.93 E-value=2e+02 Score=24.13 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=40.8
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEE-eeccccc--HHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRI-GHACCFE--EEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri-~Hg~~l~--~~~~~~l~~~~i~v~~c 163 (257)
..++.+-+.|+++|+.+.+-........ .+..++..+++-| ..+...+ +..++.+.+.+++++.+
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 16 AETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEE
Confidence 5677778889999999888654332111 1233334466643 3344333 45678888999998765
No 410
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.70 E-value=2.3e+02 Score=23.57 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=39.4
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhh----HHHHHhcCCcEEeec-cc--ccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEE----IQSMLDFLPQRIGHA-CC--FEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~----i~~~l~lg~~ri~Hg-~~--l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.++++|..+.+..... ++.. +...+..+++-+.-. .. ...+.++.++++|++++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGG-DDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe
Confidence 455666677899999988876543 2322 233344577754332 21 1245578888999998765
No 411
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=34.59 E-value=1.5e+02 Score=30.01 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=22.0
Q ss_pred HHHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCC
Q 025169 183 DLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFS 217 (257)
Q Consensus 183 ~l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ 217 (257)
...++||||.-|||+|-. -.+|....++.+|
T Consensus 154 ~Ai~agVpvVPGTpgPit----t~~EA~eF~k~yG 184 (1176)
T KOG0369|consen 154 IAIEAGVPVVPGTPGPIT----TVEEALEFVKEYG 184 (1176)
T ss_pred HHHHcCCCccCCCCCCcc----cHHHHHHHHHhcC
Confidence 357899999999999853 3456555555554
No 412
>PLN02880 tyrosine decarboxylase
Probab=34.49 E-value=1.8e+02 Score=27.78 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=45.6
Q ss_pred hcccCCCcE---EEEEEEee--C-CCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeee
Q 025169 45 NGTRGKKIY---VRLLLSID--R-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 45 ~a~~~~gir---~~li~~~~--r-~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
+|+.-.|+. ++.+.+-. + ..+++..++.++...+-....+.-+..+|...++..+.+.++.+.|+++|+.+|+-
T Consensus 196 Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVD 275 (490)
T PLN02880 196 KACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVD 275 (490)
T ss_pred HHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEe
Confidence 666667775 34444321 1 25677666666544432222233334456655666677999999999999887766
Q ss_pred cC
Q 025169 119 CG 120 (257)
Q Consensus 119 a~ 120 (257)
++
T Consensus 276 aA 277 (490)
T PLN02880 276 AA 277 (490)
T ss_pred hh
Confidence 54
No 413
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.47 E-value=2.6e+02 Score=24.39 Aligned_cols=50 Identities=4% Similarity=0.061 Sum_probs=25.3
Q ss_pred cccCCCchhhhhhHhhcccCCCcEEEEEEEeeC---CCCHHHHHHHHHHHHhh
Q 025169 30 DVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR---RETTEAAMETVKLALEM 79 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r---~~~~e~~~~~~~~~~~~ 79 (257)
+.+|.--++.+++.++-..+.|+...++.+..- ..+.++=.+.++.+.+.
T Consensus 11 ~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 11 KEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDL 63 (285)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHH
Confidence 334432334555555554456777766654433 23455555555555443
No 414
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=34.42 E-value=2.6e+02 Score=23.01 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=39.6
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhh----HHHHHhcCCcEEeec-ccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEE----IQSMLDFLPQRIGHA-CCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~----i~~~l~lg~~ri~Hg-~~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.++++|..+.+..++. ++.. ++..+..+++-+.-. ...++..++.+++.|++++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNF-SIEKEIEALELLARQKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 455566677888999988876543 2322 233334567765433 223456678888889888765
No 415
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=34.40 E-value=3.8e+02 Score=24.87 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=82.8
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCC--CHhhHHHHHh-cCCc--EEeec--c-ccc-HHHHHHHhcCCCcEEe---ccc
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIP--NKEEIQSMLD-FLPQ--RIGHA--C-CFE-EEEWRKLKSSKIPVEI---CLT 165 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~--~~~~i~~~l~-lg~~--ri~Hg--~-~l~-~~~~~~l~~~~i~v~~---cP~ 165 (257)
+..++.+.+.|++.|..+.+|-.=.. +.......+. +.++ .+.=- . .++ ++.+++.++.|+++.. ||-
T Consensus 92 ~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~py 171 (385)
T cd01999 92 PLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPY 171 (385)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhCCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCC
Confidence 34567778899999999999833111 2111122221 2221 12111 1 224 5667888899998864 676
Q ss_pred c---cceecccc-----CCC-ccc--HHH-----------------HHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCC
Q 025169 166 S---NIRTETIS-----SLD-IHH--FVD-----------------LYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFS 217 (257)
Q Consensus 166 S---N~~l~~~~-----~~~-~~p--i~~-----------------l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~ 217 (257)
| |++-.++. +.. ..| +.. =+++|+||+|+ +-.+...+++.++......+|
T Consensus 172 S~d~nl~~~s~e~g~le~~~~~~~~~~~~~t~~~~~~p~~p~~v~i~F~~G~pv~ln--g~~~~~~~li~~lN~i~g~~G 249 (385)
T cd01999 172 SIDENLWGRSIEGGILEDPDNEPPEDAYEWTVSPEDAPDEPEYVEIEFEKGVPVALN--GEKLDPVELILELNEIAGKHG 249 (385)
T ss_pred ccCCCcceeecccccccCCCcCCChhHHhhcCCHhHCCCCCeEEEEEEEccEEEEEc--CeeCCHHHHHHHHHHHHHhcC
Confidence 5 55433221 111 111 111 14789999994 333323466676666655444
Q ss_pred C---------------------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 025169 218 L---------------------GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 254 (257)
Q Consensus 218 l---------------------s~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~~ 254 (257)
+ +...++-.+...++..-++.++.. +...++..+.+
T Consensus 250 vGr~d~ve~r~vG~Ksr~vyE~P~~~iL~~Ah~~Le~~~l~~~~~~-~k~~~~~~~~~ 306 (385)
T cd01999 250 VGRIDIVENRVIGIKSREVYEAPGATILIKAHRDLESLTLDREVLH-FKDIVDPKYAE 306 (385)
T ss_pred cCcccccccccccccccceecCHHHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHH
Confidence 2 234556667777777777775544 55555554444
No 416
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.29 E-value=4.1e+02 Score=25.21 Aligned_cols=199 Identities=11% Similarity=0.080 Sum_probs=94.6
Q ss_pred ccceeeee---ccCccccccCCCchhhhhhHhhcccCCCcEEEE----EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEe
Q 025169 16 AVSAVDVD---FASRSIDVRRPVNTKNMNDACNGTRGKKIYVRL----LLSIDRRETTEAAMETVKLALEMRDLGVVGID 88 (257)
Q Consensus 16 ~v~y~E~r---~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~l----i~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~ 88 (257)
.|..+|+- .+|..+..-+-+-++.+....+......+..-+ +.+. ++.+.+...+.++.+.+..-+ ++.+-
T Consensus 39 Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~-~~~pddvv~~~v~~A~~~Gvd-~irif 116 (448)
T PRK12331 39 GYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGY-RNYADDVVESFVQKSVENGID-IIRIF 116 (448)
T ss_pred CCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecccccccc-ccCchhhHHHHHHHHHHCCCC-EEEEE
Confidence 57788883 111211122223456676555444433322111 1111 112223345556665554333 33322
Q ss_pred ccCCCCCCChhcHHHHHHHHHHcCCceeeecC-CCCC---Hhh----HHHHHhcCCcEEeec---ccccHH----HHHHH
Q 025169 89 LSGNPTKGEWTTFLPALKFAREQGLQITLHCG-EIPN---KEE----IQSMLDFLPQRIGHA---CCFEEE----EWRKL 153 (257)
Q Consensus 89 l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~-E~~~---~~~----i~~~l~lg~~ri~Hg---~~l~~~----~~~~l 153 (257)
.+..+ ...++.+++.|++.|+.+....+ +..+ .+. ++++.++|+++|.=+ =.++|. .++.+
T Consensus 117 ~~lnd----~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 117 DALND----VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred EecCc----HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 22211 13577889999999987654432 2211 122 234556798876422 123444 45555
Q ss_pred hcC-CCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCCCCC--CChHHHHHHHHHhCC----CCHHHHHHH
Q 025169 154 KSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS--TSVSREYDLAASAFS----LGRREMFQL 226 (257)
Q Consensus 154 ~~~-~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~--~~l~~E~~~a~~~~~----ls~~~v~~~ 226 (257)
+++ ++++.+=--.+. +++....-..+++|+.+.=+|=+|...+ ..-++++..+....| ++.+.+.++
T Consensus 193 k~~~~~pi~~H~Hnt~------GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~ 266 (448)
T PRK12331 193 KEAVTVPLEVHTHATS------GIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYDTGLDLEELSEI 266 (448)
T ss_pred HHhcCCeEEEEecCCC------CcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 543 344432112222 2244566778899998766666554333 223455555555443 445555554
No 417
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.07 E-value=3.1e+02 Score=23.97 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=39.9
Q ss_pred hhhhhhHhhcccCCCcEEEEEEEeeCC---CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC
Q 025169 37 TKNMNDACNGTRGKKIYVRLLLSIDRR---ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 37 ~~~~~~~~~a~~~~gir~~li~~~~r~---~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
.+.+++.++-..+.|+...++.+..-. .+.++-.+.++.+.+..++-++|++ ..+..+-.+..+.|++.|.
T Consensus 19 ~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg------~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 19 KEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG------SLNLEESIELARAAKSFGI 92 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC------cCCHHHHHHHHHHHHHcCC
Confidence 345555565555678888877766553 3566666666666554433122321 1234455555666677663
No 418
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=33.69 E-value=2.2e+02 Score=27.13 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=45.9
Q ss_pred hHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 42 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
++-++.+++|-+..+...+.- .++++..+..+.+.+.... .+=+++. . .+ ..++.+.+.|++.+++++.|-+
T Consensus 202 a~~~a~~eTG~~~~y~~NiTa-~~~~em~~ra~~a~~~G~~-~~mv~~~--~-G~--~~l~~l~~~a~~~~l~IhaHrA 273 (450)
T cd08212 202 AVNKAQAETGEVKGHYLNVTA-GTMEEMYKRAEFAKELGSP-IIMHDLL--T-GF--TAIQSLAKWCRDNGMLLHLHRA 273 (450)
T ss_pred HHHHHHHhhCCcceeeccccC-CCHHHHHHHHHHHHHhCCC-eEeeecc--c-cc--chHHHHHHHhhhcCceEEeccc
Confidence 334778888877666655552 2477888888888776544 2222211 1 22 2377777778889999999964
No 419
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=33.66 E-value=2.1e+02 Score=26.42 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC-ceeeecCCCCCHhhHHHHHhcC---CcE---Eeec
Q 025169 70 METVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEEIQSMLDFL---PQR---IGHA 142 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl-~v~~Ha~E~~~~~~i~~~l~lg---~~r---i~Hg 142 (257)
.+.++.+.+..++.+|=+++ |.|.+.| .....+..|++.++ ++.++.+=..-+..++..++-+ .|- -||-
T Consensus 119 ldAl~iA~~nP~k~vVF~av-GFETTaP--~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV 195 (364)
T PRK15062 119 LDALKIARENPDKEVVFFAI-GFETTAP--ATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHV 195 (364)
T ss_pred HHHHHHHHHCCCCeEEEEec-CchhccH--HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEe
Confidence 45666677666655554443 5565433 34455555666654 4555554222333444333322 222 1565
Q ss_pred ccc-cHHHHHHHh-cCCCcEEec
Q 025169 143 CCF-EEEEWRKLK-SSKIPVEIC 163 (257)
Q Consensus 143 ~~l-~~~~~~~l~-~~~i~v~~c 163 (257)
..+ -.+..+.++ +.+++++++
T Consensus 196 stI~G~~~y~~l~~~y~~P~VVa 218 (364)
T PRK15062 196 STIIGTEPYEFLAEEYGIPVVVA 218 (364)
T ss_pred EEEeccchhHHHHHHcCCCeEEe
Confidence 433 344555554 447776653
No 420
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=33.55 E-value=1e+02 Score=30.37 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=62.5
Q ss_pred eee-eeccCccccccCC-----C------------chhhhhhHhhcccCCCcEEEEEEEe---eC----CC--CH----H
Q 025169 19 AVD-VDFASRSIDVRRP-----V------------NTKNMNDACNGTRGKKIYVRLLLSI---DR----RE--TT----E 67 (257)
Q Consensus 19 y~E-~r~~p~~~~~~~~-----~------------~~~~~~~~~~a~~~~gir~~li~~~---~r----~~--~~----e 67 (257)
++| +|+.|-.+-.+.. . +++.+..+++.+++.|+-+|+..-. .+ .. .| +
T Consensus 104 ~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVe 183 (611)
T PRK02048 104 YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVE 183 (611)
T ss_pred hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHH
Confidence 355 8889866644321 1 1345566778888888877776421 11 11 22 4
Q ss_pred HHHHHHHHHHhhCCC-ceEEEeccCCCCCCChhcHHHHHHHHHHc--CCceeeecCCCCCHh--hHHHHHhcCC---cEE
Q 025169 68 AAMETVKLALEMRDL-GVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKE--EIQSMLDFLP---QRI 139 (257)
Q Consensus 68 ~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~~~~~~~~~~~~A~~~--gl~v~~Ha~E~~~~~--~i~~~l~lg~---~ri 139 (257)
.+.+.++.+.++.-. -++.+-.+ +. ......++.+++...+. +.|+|+...|....+ -++.++.+|. +-|
T Consensus 184 SAle~~~i~e~~~f~diviS~KsS-~~-~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~~edg~IKSAigiGaLL~DGI 261 (611)
T PRK02048 184 SCMEFLRICVEEHFTDVVISIKAS-NT-VVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGDGEDGRIKSAVGIGALLADGI 261 (611)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEeC-Cc-HHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCcCceehhHHHHHHHHhcCC
Confidence 455666666654322 23333222 11 11223344444433333 578888887774332 2455555443 445
Q ss_pred eeccc
Q 025169 140 GHACC 144 (257)
Q Consensus 140 ~Hg~~ 144 (257)
|=++.
T Consensus 262 GDTIR 266 (611)
T PRK02048 262 GDTIR 266 (611)
T ss_pred ccEEE
Confidence 54443
No 421
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=33.43 E-value=3e+02 Score=23.29 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=79.9
Q ss_pred hhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc--cHHHHHHHhc
Q 025169 78 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS 155 (257)
Q Consensus 78 ~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l--~~~~~~~l~~ 155 (257)
.+..+.+.=+||.+.. ...+..+.-+.+.+++.++|+++=.| ....+.+...++.|++++.=|... +++.++.+.+
T Consensus 40 ~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 40 EQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGG-IRSIEDAERLLDAGADRVVIGTEALEDPELLEELAE 117 (229)
T ss_dssp HTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESS-E-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHH
T ss_pred HcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCc-cCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHH
Confidence 3444556666776532 12334555556777787899988765 234567778888999986655533 6777777665
Q ss_pred C----CCcEEeccccc--ceeccccCC-Cccc---HHHHHhcCCCEEecCC---CCCCCCCChHHHHHHHHHhC------
Q 025169 156 S----KIPVEICLTSN--IRTETISSL-DIHH---FVDLYKAQHPLVLCTD---DSGVFSTSVSREYDLAASAF------ 216 (257)
Q Consensus 156 ~----~i~v~~cP~SN--~~l~~~~~~-~~~p---i~~l~~~Gv~v~lgTD---~~~~~~~~l~~E~~~a~~~~------ 216 (257)
+ .+.+.+--.-+ ..+...... ...| +.++.+.|+.=.|-|| +....+.++ +-++.+....
T Consensus 118 ~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~-~~~~~l~~~~~~~via 196 (229)
T PF00977_consen 118 RYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDL-ELLKQLAEAVNIPVIA 196 (229)
T ss_dssp HHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--H-HHHHHHHHHHSSEEEE
T ss_pred HcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCH-HHHHHHHHHcCCCEEE
Confidence 3 45444433333 111111110 1112 5677888998667777 223334443 2233333221
Q ss_pred --CC-CHHHHHHHHHHHH
Q 025169 217 --SL-GRREMFQLAKSAV 231 (257)
Q Consensus 217 --~l-s~~~v~~~~~n~~ 231 (257)
|. +.+|+.++...++
T Consensus 197 sGGv~~~~Dl~~l~~~G~ 214 (229)
T PF00977_consen 197 SGGVRSLEDLRELKKAGI 214 (229)
T ss_dssp ESS--SHHHHHHHHHTTE
T ss_pred ecCCCCHHHHHHHHHCCC
Confidence 44 6788888875444
No 422
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=33.27 E-value=3.6e+02 Score=25.30 Aligned_cols=105 Identities=20% Similarity=0.124 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHhhc-cc---eeeeeccC-ccccccCCCchhh----hhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHH
Q 025169 2 SKRSYMDAVVEGLRA-VS---AVDVDFAS-RSIDVRRPVNTKN----MNDACNGTRGKKIYVRLLLSIDRRETTEAAMET 72 (257)
Q Consensus 2 ~~~~y~~~~~~~~~~-v~---y~E~r~~p-~~~~~~~~~~~~~----~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~ 72 (257)
+.+.|-+.+-+.+.. |- -=|.-++| +.. .++. ++.+-++.+++|=+....+.+.- ++++..+.
T Consensus 169 ~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~------~e~R~~~~m~~i~~aeaeTGekk~y~~NITa--~~~EM~rr 240 (429)
T COG1850 169 SPEEYAELAYELLSGGVDFIKDDENLTSPPFNR------FEERVAKIMEAIDKAEAETGEKKMYAVNITA--PCEEMMRR 240 (429)
T ss_pred CHHHHHHHHHHHHhcCcceecchhhccCccccc------HHHHHHHHHHHHHHHHHhhCceEEEEeeccC--CHHHHHHH
Confidence 457888888888773 22 22344442 211 2333 33344778888877766666664 37888888
Q ss_pred HHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 73 VKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 73 ~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
.+++.+...+ .+-+|+.. .. ..-++.+.+. ++.|+.+|+|-+
T Consensus 241 ae~a~elG~~-~~midi~~--~G--~~a~q~lre~-~d~gl~ihaHra 282 (429)
T COG1850 241 AELAAELGAN-YVMIDIVV--TG--FTALQYLRED-EDIGLAIHAHRA 282 (429)
T ss_pred HHHHHHcCCC-EEEEEEEe--cc--cHHHHHHHhc-ccCCceEEechh
Confidence 8888877665 33344321 01 1234444444 778999999853
No 423
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=32.85 E-value=95 Score=19.42 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 025169 210 DLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDL 250 (257)
Q Consensus 210 ~~a~~~~~ls~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~ 250 (257)
+-.++..|+|...+-+...+. ..++++.|+++++..++
T Consensus 3 ~dIA~~agvS~~TVSr~ln~~---~~vs~~tr~rI~~~a~~ 40 (46)
T PF00356_consen 3 KDIAREAGVSKSTVSRVLNGP---PRVSEETRERILEAAEE 40 (46)
T ss_dssp HHHHHHHTSSHHHHHHHHTTC---SSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHhCC---CCCCHHHHHHHHHHHHH
Confidence 344566799999988875444 56777777777666554
No 424
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=32.76 E-value=2.7e+02 Score=23.91 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccc
Q 025169 70 METVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 145 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l 145 (257)
.+.++.+..|.+-|-.++-+.+.. ++++++++ +++.++|+.+........-.+.+.-++|..++.++..+
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~---~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK---DPEEIRAF---AEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHH---HhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHH
Confidence 344444555544333333332321 44555554 44578898888765432134566667899998877654
No 425
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.74 E-value=3.8e+02 Score=24.36 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=40.1
Q ss_pred eEEEeccCC-CCCCChhcHHHHHHHHHHc-CC----ceeeecC-CCCCHhhHHHHHhcCCcEEeecccc-cHHHHHHHh
Q 025169 84 VVGIDLSGN-PTKGEWTTFLPALKFAREQ-GL----QITLHCG-EIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKLK 154 (257)
Q Consensus 84 vvg~~l~g~-~~~~~~~~~~~~~~~A~~~-gl----~v~~Ha~-E~~~~~~i~~~l~lg~~ri~Hg~~l-~~~~~~~l~ 154 (257)
+-.+-+.|. +...+++.+.++++.+++. ++ .+++-+. ++-+.+.+....+.|.+++.-|+.- +++.++.+.
T Consensus 52 i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~ 130 (377)
T PRK08599 52 LKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG 130 (377)
T ss_pred eeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 434444443 3334678888888888774 33 3443321 1112334444445788898888875 666665554
No 426
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=32.71 E-value=2.2e+02 Score=26.52 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred cCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCCCCHhh
Q 025169 48 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 127 (257)
Q Consensus 48 ~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~ 127 (257)
+.+||.+++. +..+++..++.++. +-+ .|-+...|+|. .....+.++.+.|+++|+|+.+--- .....
T Consensus 123 ~~~Gi~v~fv----d~~d~~~~~~aI~~----nTk-avf~EtigNP~-~~v~Die~ia~iAh~~gvpliVDNT--~atpy 190 (426)
T COG2873 123 KRLGIEVRFV----DPDDPENFEAAIDE----NTK-AVFAETIGNPG-LDVLDIEAIAEIAHRHGVPLIVDNT--FATPY 190 (426)
T ss_pred HhcCcEEEEe----CCCCHHHHHHHhCc----ccc-eEEEEeccCCC-ccccCHHHHHHHHHHcCCcEEEecC--CCcce
Confidence 4456665554 22345544443331 111 23333345443 2345799999999999999988642 12224
Q ss_pred HHHHHhcCCcEEee
Q 025169 128 IQSMLDFLPQRIGH 141 (257)
Q Consensus 128 i~~~l~lg~~ri~H 141 (257)
+.+-++.|+|.+.|
T Consensus 191 l~rP~~hGADIVvH 204 (426)
T COG2873 191 LCRPIEHGADIVVH 204 (426)
T ss_pred ecchhhcCCCEEEE
Confidence 55667788887644
No 427
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.69 E-value=3.1e+02 Score=23.31 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEecc-CC---CCCCChhcHHHHHHHHHHc--CCceeeecCCCCCHhhHHHHHhcCCcEE-
Q 025169 67 EAAMETVKLALEMRDLGVVGIDLS-GN---PTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRI- 139 (257)
Q Consensus 67 e~~~~~~~~~~~~~~~~vvg~~l~-g~---~~~~~~~~~~~~~~~A~~~--gl~v~~Ha~E~~~~~~i~~~l~lg~~ri- 139 (257)
-...+.++...+..-+ .+-+|+- |. ..++.++.++.+ |+. ++++.+|.-=..+...+....+.|++.|
T Consensus 16 ~~l~~~i~~l~~~g~d-~lHiDimDG~FVPN~tfg~~~i~~l----r~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 16 ARLGEEVDNVLKAGAD-WVHFDVMDNHYVPNLTIGPMVCQAL----RKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred HHHHHHHHHHHHcCCC-EEEEecccCccCCCcccCHHHHHHH----HhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 3344555555544333 5556653 31 224445444433 343 7999999864444455666667899875
Q ss_pred eecccc-c-HHHHHHHhcCC--CcEEecccc
Q 025169 140 GHACCF-E-EEEWRKLKSSK--IPVEICLTS 166 (257)
Q Consensus 140 ~Hg~~l-~-~~~~~~l~~~~--i~v~~cP~S 166 (257)
-|.-.. + .+.++.+++.| ..++++|.+
T Consensus 91 ~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T 121 (223)
T PRK08745 91 FHPEASRHVHRTIQLIKSHGCQAGLVLNPAT 121 (223)
T ss_pred EcccCcccHHHHHHHHHHCCCceeEEeCCCC
Confidence 576532 2 36678888887 556788854
No 428
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=32.61 E-value=76 Score=26.33 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=47.6
Q ss_pred EEeecccccHHHH--HHHhcCCCcEEecccccceeccccCCCcccHHHHH-hcCC-CEEecCCCCCCCCCChHHHHHHHH
Q 025169 138 RIGHACCFEEEEW--RKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLY-KAQH-PLVLCTDDSGVFSTSVSREYDLAA 213 (257)
Q Consensus 138 ri~Hg~~l~~~~~--~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~-~~Gv-~v~lgTD~~~~~~~~l~~E~~~a~ 213 (257)
+++||+.-+.-.. +..-+.+.+++++|..|-.+.. ....+..|+ ..|+ -|-.|-|||..-..+|.-.+.+..
T Consensus 95 KiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~----~~~Ni~~L~~~~g~~~v~f~qd~~~~k~~s~~~~~~~~~ 170 (187)
T TIGR02852 95 KLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGL----NAVNLMRLLNTKNIYFVPFGQDDPFKKPNSLVAKMDYLI 170 (187)
T ss_pred HHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHh----CHHHHHHHHHcCCEEEEeecCCCCCCCchhHHhhHHhhH
Confidence 4577775443221 1111356799999999987754 124588876 8888 478999998766677776665543
No 429
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=32.43 E-value=3.8e+02 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCC-ChhcHHHHHHHHH
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAR 109 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~-~~~~~~~~~~~A~ 109 (257)
.+.+...+.++...+......+.+.+.|.|+.. +...++++++.++
T Consensus 48 ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~ 94 (412)
T PRK13745 48 MSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQK 94 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHH
Confidence 345555555555443222223444444333333 2234455555443
No 430
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=32.42 E-value=3.9e+02 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=15.6
Q ss_pred ChhcHHHHHHHHHHcCCc-eeeec
Q 025169 97 EWTTFLPALKFAREQGLQ-ITLHC 119 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~-v~~Ha 119 (257)
+.+...++++.+++.|+. +.++.
T Consensus 137 ~~~~~~~ai~~~~~~g~~~v~~Dl 160 (370)
T PRK06294 137 SSSKAIDAVQECSEHGFSNLSIDL 160 (370)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEe
Confidence 456677777788888774 65553
No 431
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=32.31 E-value=2.9e+02 Score=24.18 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=25.1
Q ss_pred cccCCCchhhhhhHhhcccCCCcEEEEEEEeeC---CCCHHHHHHHHHHHHhh
Q 025169 30 DVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR---RETTEAAMETVKLALEM 79 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r---~~~~e~~~~~~~~~~~~ 79 (257)
+.+|.=-.+.+++.++-..+.|++..++.+..- ..+.++=.+.++.+.+.
T Consensus 14 ~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 14 KEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEA 66 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHH
Confidence 334333344555555555556777666554443 23455555555544443
No 432
>PLN02417 dihydrodipicolinate synthase
Probab=31.96 E-value=3.5e+02 Score=23.63 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=10.0
Q ss_pred HHHHHhcCCCEEecCCC
Q 025169 181 FVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 181 i~~l~~~Gv~v~lgTD~ 197 (257)
+.+++..++.|--|.|+
T Consensus 167 ~~~~~~~~~~v~~G~d~ 183 (280)
T PLN02417 167 VKQYTEKGILLWSGNDD 183 (280)
T ss_pred HHHHhcCCeEEEEcccH
Confidence 34444556777777664
No 433
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=31.92 E-value=3.3e+02 Score=24.48 Aligned_cols=91 Identities=18% Similarity=0.029 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhhCCC-ceEEEeccCCCCC--C-ChhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 65 TTEAAMETVKLALEMRDL-GVVGIDLSGNPTK--G-EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~-~vvg~~l~g~~~~--~-~~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
+|+++.+.++.. .-+ .-+.++-++..+. . |.-.|..+-+.++..++|+.+|=|-..+.+.+....++|.+. .
T Consensus 156 dPeeA~~Fv~~T---gvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~-~ 231 (307)
T PRK05835 156 NPKEAEQFVKES---QVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDL-K 231 (307)
T ss_pred CHHHHHHHHHhh---CCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhcccc-c
Confidence 356655554422 212 1244444433443 2 223355555556667999999976433333333333355432 1
Q ss_pred ecccccHHHHHHHhcCCCc
Q 025169 141 HACCFEEEEWRKLKSSKIP 159 (257)
Q Consensus 141 Hg~~l~~~~~~~l~~~~i~ 159 (257)
-.+-.+-++++...+.||.
T Consensus 232 ~~~g~~~e~~~kai~~GI~ 250 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGIN 250 (307)
T ss_pred cccCCCHHHHHHHHHcCce
Confidence 1222455778888888875
No 434
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=31.80 E-value=2e+02 Score=25.84 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.+.++..+.++.+.+. ++..+.+.|.|....+ .+.++++.+++.|+.+.+-.
T Consensus 37 l~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~~-~~~~ii~~~~~~g~~~~l~T 88 (358)
T TIGR02109 37 LTTEEWTDVLTQAAEL---GVLQLHFSGGEPLARP-DLVELVAHARRLGLYTNLIT 88 (358)
T ss_pred CCHHHHHHHHHHHHhc---CCcEEEEeCccccccc-cHHHHHHHHHHcCCeEEEEe
Confidence 4667777777665543 2334445554555444 47789999999888766543
No 435
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=31.54 E-value=1.1e+02 Score=26.72 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+.++..+.++....+.....-++-+.|.|....++.+.++++.+++.|+.+++-.
T Consensus 107 t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~T 161 (295)
T TIGR02494 107 TVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHERGIHTAVET 161 (295)
T ss_pred cHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeC
Confidence 3444444444333332211224455565666666667889999999998777654
No 436
>PRK15447 putative protease; Provisional
Probab=31.50 E-value=2.8e+02 Score=24.60 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=11.7
Q ss_pred CChhcHHHHHHHHHHcCCceee
Q 025169 96 GEWTTFLPALKFAREQGLQITL 117 (257)
Q Consensus 96 ~~~~~~~~~~~~A~~~gl~v~~ 117 (257)
++.+++.++++.+++.|.++.+
T Consensus 45 f~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 45 LKVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 4455555555555555555443
No 437
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=31.48 E-value=91 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=25.5
Q ss_pred EEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 86 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 86 g~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
|+.+.|.|+...++.+.++++.+++.|+++.+..
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~T 106 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDT 106 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4445666666666667789999999999887765
No 438
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=31.45 E-value=1.2e+02 Score=27.19 Aligned_cols=108 Identities=9% Similarity=0.084 Sum_probs=60.0
Q ss_pred hHhhcccCCCcEEEEEEEeeCC---CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH--cCCcee
Q 025169 42 DACNGTRGKKIYVRLLLSIDRR---ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE--QGLQIT 116 (257)
Q Consensus 42 ~~~~a~~~~gir~~li~~~~r~---~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~--~gl~v~ 116 (257)
+++++.++++.++-+.+++.++ .+-.-..+........ +++.++++-+ ++|+.+..+.+.+.. .|+++-
T Consensus 164 Aiv~l~~~~s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~--~~iaa~gvNC----~~p~~~~a~i~~l~~~~~~~pii 237 (300)
T COG2040 164 AIVQLVQEFSKPAWISFTLNDDTRLRDGTPLSEAAAILAGL--PNIAALGVNC----CHPDHIPAAIEELSKLLTGKPII 237 (300)
T ss_pred HHHHHHHHhCCceEEEEEeCCCCccCCCccHHHHHHHHhcC--cchhheeecc----CChhhhHHHHHHHHhcCCCCceE
Confidence 4567777888888888887752 1111122222222222 2356665543 356778877777633 355555
Q ss_pred eec--CCCCCHh-----------hH-----HHHHhcCCcEEeecccccHHHHHHHhc
Q 025169 117 LHC--GEIPNKE-----------EI-----QSMLDFLPQRIGHACCFEEEEWRKLKS 155 (257)
Q Consensus 117 ~Ha--~E~~~~~-----------~i-----~~~l~lg~~ri~Hg~~l~~~~~~~l~~ 155 (257)
+-. ||..++. +. ..-...|++.||-|+..+|.++..+++
T Consensus 238 vYPNSGe~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~ 294 (300)
T COG2040 238 VYPNSGEQYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAK 294 (300)
T ss_pred EcCCcccccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHH
Confidence 443 2222110 01 122235888899999999988888764
No 439
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.40 E-value=4.1e+02 Score=24.59 Aligned_cols=85 Identities=13% Similarity=-0.065 Sum_probs=49.9
Q ss_pred CCchhhhhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecc------CCCCCC-ChhcHHHH
Q 025169 34 PVNTKNMNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLS------GNPTKG-EWTTFLPA 104 (257)
Q Consensus 34 ~~~~~~~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~~vvg~~l~------g~~~~~-~~~~~~~~ 104 (257)
.+++++++++.+..++.|.++.+=+.+.+. .+++.+.+..++.....+. .+-+.+- +..+.. +.+.+.+.
T Consensus 262 ~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~-~~~VNLIpyNp~~~~~y~~~~~~~~~~F 340 (373)
T PRK14459 262 WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGG-WVHVNLIPLNPTPGSKWTASPPEVEREF 340 (373)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCC-CeEEEEEccCCCCCCCCcCCCHHHHHHH
Confidence 345566666555555667776555555553 3577888888877655321 2223322 112222 23556667
Q ss_pred HHHHHHcCCceeeec
Q 025169 105 LKFAREQGLQITLHC 119 (257)
Q Consensus 105 ~~~A~~~gl~v~~Ha 119 (257)
.+..+++|+.+++--
T Consensus 341 ~~~L~~~gi~~tiR~ 355 (373)
T PRK14459 341 VRRLRAAGVPCTVRD 355 (373)
T ss_pred HHHHHHCCCeEEeeC
Confidence 777788999998854
No 440
>PLN02428 lipoic acid synthase
Probab=31.17 E-value=4.2e+02 Score=24.31 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCC--------CChhcHHHHHHHHH
Q 025169 38 KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK--------GEWTTFLPALKFAR 109 (257)
Q Consensus 38 ~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~--------~~~~~~~~~~~~A~ 109 (257)
++++.+.+......++..+++++ ..+.++..+.++...+..-+ ++.++-.-.|.. .+|++|...-+.|.
T Consensus 235 e~L~~ak~~~pGi~tkSg~MvGL--GET~Edv~e~l~~Lrelgvd-~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~ 311 (349)
T PLN02428 235 DVLKHAKESKPGLLTKTSIMLGL--GETDEEVVQTMEDLRAAGVD-VVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGE 311 (349)
T ss_pred HHHHHHHHhCCCCeEEEeEEEec--CCCHHHHHHHHHHHHHcCCC-EEeeccccCCCcceeeeecccCHHHHHHHHHHHH
Q ss_pred HcCCceee
Q 025169 110 EQGLQITL 117 (257)
Q Consensus 110 ~~gl~v~~ 117 (257)
+.|+....
T Consensus 312 ~~gf~~v~ 319 (349)
T PLN02428 312 EMGFRYVA 319 (349)
T ss_pred HcCCceEE
No 441
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=31.13 E-value=1.6e+02 Score=26.59 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=46.7
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecC
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 120 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~ 120 (257)
+++-++.+++|-+......+.- .++++..+..+.+.+..... +-+++. ..-...+..+.+.++..+++++.|-+
T Consensus 70 ~a~~~a~~eTG~~~ly~~NiT~-~~~~em~~ra~~a~~~G~~~-vmv~~~----~~G~~~~~~l~~~~~~~~~~ih~H~A 143 (309)
T PF00016_consen 70 EAVDRAEEETGEKKLYAANITA-DTPDEMIERAEYAKEAGANA-VMVNVL----TAGFSALQSLAEDARDNGLPIHAHRA 143 (309)
T ss_dssp HHHHHHHHHHSS--EEEEEE-S-SSHHHHHHHHHHHHHHTGSE-EEEEHH----HHCHHHHHHHHHHHHHHTSEEEEETT
T ss_pred hhhhccccccceecceeccccc-ccHHHHHHhhhhhhhhccch-hhcccc----cccccccchhhhhhcccceeeeeccc
Confidence 3344678888988777766653 24778888888888776542 222321 01124577778888888999999964
No 442
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=31.08 E-value=1.6e+02 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=12.6
Q ss_pred HHHHHhh-ccceeeeeccC
Q 025169 9 AVVEGLR-AVSAVDVDFAS 26 (257)
Q Consensus 9 ~~~~~~~-~v~y~E~r~~p 26 (257)
++.+++. .|+|+|+|...
T Consensus 33 ~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 33 GYIQALDHGCRCVELDCWD 51 (135)
T ss_pred HHHHHHHhCCCEEEEEccc
Confidence 4444555 48999999874
No 443
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.06 E-value=3.2e+02 Score=22.97 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=35.5
Q ss_pred cEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCce--EEEecc--------C------CCCCCChhcHHHHHHHHHHcCCce
Q 025169 52 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGV--VGIDLS--------G------NPTKGEWTTFLPALKFAREQGLQI 115 (257)
Q Consensus 52 ir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~v--vg~~l~--------g------~~~~~~~~~~~~~~~~A~~~gl~v 115 (257)
+|.-++.++++ ++++.++..++...+.-+.+ ..+... | +....+.+.++++.+.+++.|+++
T Consensus 132 iR~~vIPg~nd--~~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 132 PRLPLIPGFTL--SRENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred EEEEEECCCCC--CHHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 44455555554 46777777777765522111 111110 0 111235577888888899999988
Q ss_pred ee
Q 025169 116 TL 117 (257)
Q Consensus 116 ~~ 117 (257)
++
T Consensus 210 ~i 211 (213)
T PRK10076 210 TV 211 (213)
T ss_pred Ee
Confidence 65
No 444
>PRK08136 glycosyl transferase family protein; Provisional
Probab=30.85 E-value=1.3e+02 Score=27.08 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHHhhccceeeeeccCccccccCCCchhhh---hhHhhcc-cCCCcEEEEEEEeeCCCCHHHHHHHHHHH
Q 025169 1 MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM---NDACNGT-RGKKIYVRLLLSIDRRETTEAAMETVKLA 76 (257)
Q Consensus 1 ~~~~~y~~~~~~~~~~v~y~E~r~~p~~~~~~~~~~~~~~---~~~~~a~-~~~gir~~li~~~~r~~~~e~~~~~~~~~ 76 (257)
|+..+|++.+.++-+ ..+++|.+|+- +.+.++. .+.-+-+.|+.--.|..+++|..-.++..
T Consensus 1 ~~~~~~i~~l~~G~~--------------~~~~Lt~eEA~~~~~~il~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~ 66 (317)
T PRK08136 1 MDYAKIIKEIGRGKN--------------GARDLDRDTARALYGAMLDGRVPDLELGAILIALRIKGESEAEMLGFLDAM 66 (317)
T ss_pred CCHHHHHHHHHCCCC--------------CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 677788888777643 45678877754 3444322 11122233332223455677765555544
Q ss_pred HhhCC------CceEEEecc---CCCCCCChhcHHHHHHHHHHcCCceeeecCCC
Q 025169 77 LEMRD------LGVVGIDLS---GNPTKGEWTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 77 ~~~~~------~~vvg~~l~---g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
.++.. ..-+-+|.+ |+-.++....+ +.-.+...|++|..|-..+
T Consensus 67 ~~~~~~~~~~~~~~~~iD~~gtgGd~~t~nist~--aA~vlA~~G~~V~kHGnr~ 119 (317)
T PRK08136 67 QAHTIPLTPPAGRPMPVVIPSYNGARKQANLTPL--LALLLAREGVPVLVHGVSE 119 (317)
T ss_pred HHhCCcCCCCCCCCceEEeCCCCCCCCCcChHHH--HHHHHHHCCCeEEEECCCC
Confidence 43321 110123333 44222222222 2333456799999997644
No 445
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.81 E-value=3.1e+02 Score=22.75 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=39.0
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEEee-cccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIGH-ACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri~H-g~~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+.+.++++|..+.++.+...... .+......+++-+.- +...++..++.+.+++++++..
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~ 84 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTRRGVPFVLV 84 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHcCCCEEEE
Confidence 4556677778899988887765432211 122333456765432 3333555678888889988653
No 446
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=30.81 E-value=3.7e+02 Score=23.63 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEeecccccHHHHHHHhcCCCcEE--ecccccceeccccCCCc
Q 025169 101 FLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVE--ICLTSNIRTETISSLDI 178 (257)
Q Consensus 101 ~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l~~~~~~~l~~~~i~v~--~cP~SN~~l~~~~~~~~ 178 (257)
++++++..++.|.++..|..-. ....+....++|++.+.-....+..++...-..+..+. +.|..-+..++.... .
T Consensus 210 ~k~i~~~i~~~g~~~~lH~cG~-~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei-~ 287 (330)
T cd03465 210 LKKVFDAIKALGGPVIHHNCGD-TAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEI-K 287 (330)
T ss_pred HHHHHHHHHHcCCceEEEECCC-chhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHH-H
Confidence 3466778888899999998632 11233444567887654433334344333332233332 223211222211111 1
Q ss_pred ccHHHHHhcC----CCEEecCCCCCCCCCChHHHHHHHH
Q 025169 179 HHFVDLYKAQ----HPLVLCTDDSGVFSTSVSREYDLAA 213 (257)
Q Consensus 179 ~pi~~l~~~G----v~v~lgTD~~~~~~~~l~~E~~~a~ 213 (257)
.-++++++.+ -...++++.....++.. +.++.+.
T Consensus 288 ~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~-enl~a~v 325 (330)
T cd03465 288 EEVKELLEKLLKGGGGYILSSGCEIPPDTPI-ENIKAMI 325 (330)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCCCCCH-HHHHHHH
Confidence 2245555543 34678888654444433 4444433
No 447
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.77 E-value=2.4e+02 Score=23.42 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=39.3
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEE-eecccc--cHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRI-GHACCF--EEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri-~Hg~~l--~~~~~~~l~~~~i~v~~c 163 (257)
..++.+-+.+++.|..+.+..++..... .+..++..+++-+ ..+... .++.++.+++.|++++..
T Consensus 16 ~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 16 ELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 4556666778889999888776532211 2233444577753 333322 245578888889988665
No 448
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.54 E-value=3.2e+02 Score=22.79 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=39.6
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEE-eecccc-cHHHHHHHhcCCCcEEec
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRI-GHACCF-EEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri-~Hg~~l-~~~~~~~l~~~~i~v~~c 163 (257)
...+..+.+.|++.|..+.++.++..... .+...+..+++-+ .-+... .+..++.+++++++++.+
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 15 AQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLL 85 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEE
Confidence 35566777889999999888766442211 1223333466542 222222 345577888889998776
No 449
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=30.51 E-value=2.3e+02 Score=25.31 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=10.5
Q ss_pred CCChhcHHHHHHHHHHcC
Q 025169 95 KGEWTTFLPALKFAREQG 112 (257)
Q Consensus 95 ~~~~~~~~~~~~~A~~~g 112 (257)
..+++.++.+++.++++|
T Consensus 320 ~tp~enl~a~v~a~~~~~ 337 (339)
T PRK06252 320 KTPLENIKAMVEARKEYY 337 (339)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 345566666666666554
No 450
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=30.38 E-value=2.2e+02 Score=24.08 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=49.2
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCC------HHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRET------TEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 113 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~------~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl 113 (257)
+.++++.+++.|+...+- +..+... ++......+.+.....+ ++-....+. ...+.+..+.+.+..+....
T Consensus 114 i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD-~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGAD-FVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-S-EEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCC-EEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 344557777888876555 6665211 23455666666665555 544443332 33344445555555555555
Q ss_pred c----eeeecCCCCCH----hhHHH---HHhcCCcEEe
Q 025169 114 Q----ITLHCGEIPNK----EEIQS---MLDFLPQRIG 140 (257)
Q Consensus 114 ~----v~~Ha~E~~~~----~~i~~---~l~lg~~ri~ 140 (257)
| |.+=-|- +. ..+.. .++.|++++|
T Consensus 191 p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 191 PGKVGVKASGGI--DAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp TTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred CcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCChhHH
Confidence 5 5553332 11 23333 3467887765
No 451
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=30.23 E-value=2.5e+02 Score=25.94 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcCC-ceeeecCCCCCHhhHHHHHhcC---CcE---Eeec
Q 025169 70 METVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEEIQSMLDFL---PQR---IGHA 142 (257)
Q Consensus 70 ~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl-~v~~Ha~E~~~~~~i~~~l~lg---~~r---i~Hg 142 (257)
.+.++.+.+..++.+|=+++ |.|.+.| .....+..|++.|+ ++.+|..=..-+..+...++-+ .|- -||-
T Consensus 125 ldAl~iA~~nPdk~VVF~av-GFETTaP--~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV 201 (369)
T TIGR00075 125 MDALKIAKENPDRKVVFFAI-GFETTAP--TTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHV 201 (369)
T ss_pred HHHHHHHHHCCCCeEEEEec-CchhccH--HHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEE
Confidence 45667777766665555443 5565433 35555666766654 4666654223344444334322 222 1564
Q ss_pred ccc-cHHHHHHHh-cCCCcEEec
Q 025169 143 CCF-EEEEWRKLK-SSKIPVEIC 163 (257)
Q Consensus 143 ~~l-~~~~~~~l~-~~~i~v~~c 163 (257)
..+ -.+..+.++ +.+++.+++
T Consensus 202 s~I~G~~~y~~l~~~y~~P~VVa 224 (369)
T TIGR00075 202 STIIGAKPYAPIAEKYKIPIVIA 224 (369)
T ss_pred EEEeccchhHHHHHHcCCCeEEe
Confidence 433 334455554 447776653
No 452
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.98 E-value=45 Score=23.48 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCcEEecccccc
Q 025169 147 EEEWRKLKSSKIPVEICLTSNI 168 (257)
Q Consensus 147 ~~~~~~l~~~~i~v~~cP~SN~ 168 (257)
-..++.+.+.|++++|.|++--
T Consensus 19 rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 19 RKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred HHHHHHHHHcCCCEeeecCCCc
Confidence 4678899999999999999743
No 453
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.77 E-value=3.1e+02 Score=22.37 Aligned_cols=111 Identities=8% Similarity=-0.003 Sum_probs=57.6
Q ss_pred CceeeecCCCCCHhhHHHHHhcCCcE-Eeecccc---cHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcC
Q 025169 113 LQITLHCGEIPNKEEIQSMLDFLPQR-IGHACCF---EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ 188 (257)
Q Consensus 113 l~v~~Ha~E~~~~~~i~~~l~lg~~r-i~Hg~~l---~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~G 188 (257)
+.+++|.. ..+...+.++.+.|++. +.|+..- ..+.++..++.|+.+..-- +|... ....+..+.+.|
T Consensus 55 i~~d~k~~-d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~-~~~~t------~~~~~~~~~~~g 126 (206)
T TIGR03128 55 VLADLKTM-DAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDL-INVKD------KVKRAKELKELG 126 (206)
T ss_pred EEEEEeec-cchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEe-cCCCC------hHHHHHHHHHcC
Confidence 44555554 11222467778899986 4687653 2467788888887765310 11000 012345566777
Q ss_pred CCEE-e--cCCCCCCCCCChHHHHHHHHHh---------CCCCHHHHHHHHHHHHH
Q 025169 189 HPLV-L--CTDDSGVFSTSVSREYDLAASA---------FSLGRREMFQLAKSAVK 232 (257)
Q Consensus 189 v~v~-l--gTD~~~~~~~~l~~E~~~a~~~---------~~ls~~~v~~~~~n~~~ 232 (257)
+.+. + |+++. .++....+.++.+.+. -|.+.+.+.++...|+.
T Consensus 127 ~d~v~~~pg~~~~-~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 127 ADYIGVHTGLDEQ-AKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPD 181 (206)
T ss_pred CCEEEEcCCcCcc-cCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCC
Confidence 7643 2 22221 1222223333333321 36888888877766665
No 454
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.35 E-value=3.1e+02 Score=25.04 Aligned_cols=86 Identities=7% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCchhhhhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCC-ceEEEecc-CCCCCC-ChhcHHHHHHHH
Q 025169 34 PVNTKNMNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDL-GVVGIDLS-GNPTKG-EWTTFLPALKFA 108 (257)
Q Consensus 34 ~~~~~~~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~-~vvg~~l~-g~~~~~-~~~~~~~~~~~A 108 (257)
.++++.+++...-.+.+|.++.+-+.+.+. .+++.+.+..++.....-. .++-++.. +..+.. +.+.+.+..+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 445555554333334457665555544442 2577777777665432211 12333322 222222 346666777777
Q ss_pred HHcCCceeeec
Q 025169 109 REQGLQITLHC 119 (257)
Q Consensus 109 ~~~gl~v~~Ha 119 (257)
+++|+.+++--
T Consensus 303 ~~~gi~~tiR~ 313 (344)
T PRK14464 303 HRRGVLTKVRN 313 (344)
T ss_pred HHCCceEEEEC
Confidence 88899988865
No 455
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=29.29 E-value=1.5e+02 Score=18.66 Aligned_cols=44 Identities=7% Similarity=0.023 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 025169 207 REYDLAASAFSLGRREMFQLAKSAVKFIFANG-RVKEDLKEIFDL 250 (257)
Q Consensus 207 ~E~~~a~~~~~ls~~~v~~~~~n~~~~~~~~~-~~k~~l~~~~~~ 250 (257)
.+|.......+++-..+..++..-++..++.. ..|..++..+++
T Consensus 17 ~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 17 GQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55666666678898999999888888899877 778888777654
No 456
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=29.29 E-value=3.6e+02 Score=23.02 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=47.2
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHHh-cCCc-EEeeccccc-HHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLD-FLPQ-RIGHACCFE-EEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l~-lg~~-ri~Hg~~l~-~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.+++....+. -.+.++. |.......+.+.+. .+.+ ..-+| +++ ++..+++.+..+. ++|+.+-....
T Consensus 236 ~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~di~--i~~~~~~~~~~-- 309 (394)
T cd03794 236 DTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLG-RVPKEELPELLAAADVG--LVPLKPGPAFE-- 309 (394)
T ss_pred HHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeC-CCChHHHHHHHHhhCee--EEeccCccccc--
Confidence 4555555555544 2344443 32222233433322 3333 34456 555 4556777776655 45654432201
Q ss_pred CCCccc--HHHHHhcCCCEEecCCCCC
Q 025169 175 SLDIHH--FVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 175 ~~~~~p--i~~l~~~Gv~v~lgTD~~~ 199 (257)
...| +.+.+..|+|| |+||.++
T Consensus 310 --~~~p~~~~Ea~~~G~pv-i~~~~~~ 333 (394)
T cd03794 310 --GVSPSKLFEYMAAGKPV-LASVDGE 333 (394)
T ss_pred --ccCchHHHHHHHCCCcE-EEecCCC
Confidence 1123 67999999988 6677654
No 457
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=53 Score=27.50 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred ccCccccccCCCchhhhhhHhhcc--cCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcH
Q 025169 24 FASRSIDVRRPVNTKNMNDACNGT--RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTF 101 (257)
Q Consensus 24 ~~p~~~~~~~~~~~~~~~~~~~a~--~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~ 101 (257)
|.|+.-...|.|. ++++. ..+. ....++.+.+.+..+. ......+...+++.+.+..+++++.-...+++..
T Consensus 8 FePF~~~~~NPs~-e~vk~-L~~~~i~g~~V~~~~lP~~f~~----s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERV 81 (207)
T COG2039 8 FEPFGGEPINPSW-EAVKE-LNGRIIGGAEVKGRILPVVFKK----SIDALVQAIAEVQPDLVLAIGQAGGRTKITPERV 81 (207)
T ss_pred ccCCCCCCCChHH-HHHHh-cCcccccCceEEEEEcCccHHH----HHHHHHHHHHhhCCCeEEEecccCCCCcCChhhe
Confidence 4466544444442 22221 1121 3445777777666552 2223334445566667888888865444455432
Q ss_pred HHHHHHHHHcCCceeeecCCCCCHhhHHHHHhc-CCcEEeecccccHHHHHHHhcCCCcEEeccc
Q 025169 102 LPALKFAREQGLQITLHCGEIPNKEEIQSMLDF-LPQRIGHACCFEEEEWRKLKSSKIPVEICLT 165 (257)
Q Consensus 102 ~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l-g~~ri~Hg~~l~~~~~~~l~~~~i~v~~cP~ 165 (257)
.-=++.|| + ....+.+.+.+.+.. |+. .-+...--...++.|++.|++.+++-+
T Consensus 82 AINv~Dar-----I----pDN~G~qpiDepI~~dGpa-AYfstlPvkamv~~~~~~GiPA~vS~s 136 (207)
T COG2039 82 AINVDDAR-----I----PDNAGNQPIDEPIDPDGPA-AYFSTLPVKAMVQAIREAGIPASVSNS 136 (207)
T ss_pred eecccccc-----C----CCCCCCCcCCCccCCCCch-hhhhcCcHHHHHHHHHHcCCChhhhcc
Confidence 21111111 1 111112222233322 221 111222235678888999998775544
No 458
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=29.17 E-value=1.5e+02 Score=25.09 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=37.7
Q ss_pred HHHHHHHHHhh--ccceeeeeccCccccccCCCchhhhhhHhhcccCCCcEEEEEEEeeCC-CCHHHHHHHHHHHHhh--
Q 025169 5 SYMDAVVEGLR--AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEM-- 79 (257)
Q Consensus 5 ~y~~~~~~~~~--~v~y~E~r~~p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~-~~~e~~~~~~~~~~~~-- 79 (257)
.-+..|++.++ +.-+++-|.+|.+ .+.+.+++.|+...----+.++ .+.+...+.++.+...
T Consensus 106 ~~m~~vl~~l~~~gl~FvDS~T~~~s-------------~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~ 172 (213)
T PF04748_consen 106 EAMRWVLEVLKERGLFFVDSRTTPRS-------------VAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIAR 172 (213)
T ss_dssp HHHHHHHHHHHHTT-EEEE-S--TT--------------SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEeCCCCccc-------------HHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhh
Confidence 34455566555 3556666666542 1223445556554333333332 2344444444433322
Q ss_pred CCCceEEEeccCCCCCCChhcHHHHHHHHHHcCCce
Q 025169 80 RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQI 115 (257)
Q Consensus 80 ~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v 115 (257)
+....++++= ++..+.+.+++.....++.|+.+
T Consensus 173 ~~G~aI~Igh---~~p~Tl~~L~~~~~~l~~~gi~l 205 (213)
T PF04748_consen 173 KQGSAIAIGH---PRPETLEALEEWLPELEAQGIEL 205 (213)
T ss_dssp CCSEEEEEEE----SCCHHHHHHHHHHHHHHCTEEE
T ss_pred hcCcEEEEEc---CCHHHHHHHHHHHhHHhhCCEEE
Confidence 1222445432 22223444555555555555543
No 459
>COG3528 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.14 E-value=52 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=32.7
Q ss_pred HHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCC
Q 025169 151 RKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD 197 (257)
Q Consensus 151 ~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~ 197 (257)
.+++-.|..+++.|.+|+.+|. ++..+..|..+.+|+|-
T Consensus 186 p~~~i~g~~~el~p~~~v~~GN--------~r~yl~~G~~~r~G~d~ 224 (330)
T COG3528 186 PLLDILGFNVELYPEVSVVLGN--------LRQYLQYGATFRAGNDK 224 (330)
T ss_pred hhhhhhccceeeccceeeeccc--------HHHHhhccceeeecccc
Confidence 4556678999999999998764 78899999999999883
No 460
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.13 E-value=3.3e+02 Score=22.45 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=53.9
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCH--hhHHHHHhcCCcEEee-cccccHHHHHHHhcCCCcEEecccc--cceecc-
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLDFLPQRIGH-ACCFEEEEWRKLKSSKIPVEICLTS--NIRTET- 172 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~--~~i~~~l~lg~~ri~H-g~~l~~~~~~~l~~~~i~v~~cP~S--N~~l~~- 172 (257)
..+..+-+.|+++|..+.++..+.... ..+..++..+++.+.= ....++..++.+.++|++++..-.. +.....
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v 95 (266)
T cd06278 16 ELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSSELAEECRRNGIPVVLINRYVDGPGVDAV 95 (266)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhcCCCEEEECCccCCCCCCEE
Confidence 445666778899999998887654321 1122334456664321 1222445678888899998765211 111111
Q ss_pred ccC---CCcccHHHHHhcCC-CEEecCCCCC
Q 025169 173 ISS---LDIHHFVDLYKAQH-PLVLCTDDSG 199 (257)
Q Consensus 173 ~~~---~~~~pi~~l~~~Gv-~v~lgTD~~~ 199 (257)
..+ .+..-...|.++|. +|++-+.++.
T Consensus 96 ~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~ 126 (266)
T cd06278 96 CSDNYEAGRLAAELLLAKGCRRIAFIGGPAD 126 (266)
T ss_pred EEChHHHHHHHHHHHHHCCCceEEEEcCCCc
Confidence 001 01122455666775 6777665543
No 461
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=29.10 E-value=5.1e+02 Score=24.70 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHH-hhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcC-CceeeecCCCC-----CHhhHHHHHhc
Q 025169 62 RRETTEAAMETVKLAL-EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-LQITLHCGEIP-----NKEEIQSMLDF 134 (257)
Q Consensus 62 r~~~~e~~~~~~~~~~-~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~g-l~v~~Ha~E~~-----~~~~i~~~l~l 134 (257)
|..+++...+.++... ++ ++--+.+..+..+.+.+.+.++++...+.| +++...+.-.. +++-+...-+.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~---gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a 296 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTH---GVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA 296 (497)
T ss_pred ecCCHHHHHHHHHHHHHHc---CCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh
Confidence 3456666544444332 23 222233444444456667888888777766 65554432111 12222333346
Q ss_pred CCcEEeecccc-cH----------------HHHHHHhcCCCcE
Q 025169 135 LPQRIGHACCF-EE----------------EEWRKLKSSKIPV 160 (257)
Q Consensus 135 g~~ri~Hg~~l-~~----------------~~~~~l~~~~i~v 160 (257)
|..++.-|+.. ++ +-++.+++.|+.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~ 339 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILS 339 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcE
Confidence 88777666543 33 3457777888764
No 462
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=28.90 E-value=4.2e+02 Score=23.61 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCchhhhhhHhhcccCCCcEEEEEEEeeCCC-CHHHHHHHHHHHHhhCCCceEEEecc--------CCC---CCCChhcH
Q 025169 34 PVNTKNMNDACNGTRGKKIYVRLLLSIDRRE-TTEAAMETVKLALEMRDLGVVGIDLS--------GNP---TKGEWTTF 101 (257)
Q Consensus 34 ~~~~~~~~~~~~a~~~~gir~~li~~~~r~~-~~e~~~~~~~~~~~~~~~~vvg~~l~--------g~~---~~~~~~~~ 101 (257)
++..|.++.+-+-..-..+- ++..+...+ ++....+.++... .-|++|+.+- |.. .-.|.+++
T Consensus 61 l~~~e~~~~~~~I~~~~~iP--viaD~d~GyG~~~~v~r~V~~~~---~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~ 135 (292)
T PRK11320 61 TTLDDVLIDVRRITDACDLP--LLVDIDTGFGGAFNIARTVKSMI---KAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEM 135 (292)
T ss_pred CCHHHHHHHHHHHHhccCCC--EEEECCCCCCCHHHHHHHHHHHH---HcCCeEEEEecCCCccccCCCCCCcccCHHHH
Confidence 56666665544333333322 455555544 3555555555443 3466776652 110 11355555
Q ss_pred HHHHHHHHHc--CCceeeecC-CCCCHhhHHHHH-------hcCCcE-EeecccccHHHHHHHhcC-CCcEEecccccce
Q 025169 102 LPALKFAREQ--GLQITLHCG-EIPNKEEIQSML-------DFLPQR-IGHACCFEEEEWRKLKSS-KIPVEICLTSNIR 169 (257)
Q Consensus 102 ~~~~~~A~~~--gl~v~~Ha~-E~~~~~~i~~~l-------~lg~~r-i~Hg~~l~~~~~~~l~~~-~i~v~~cP~SN~~ 169 (257)
..=++.|++. +..+.+=+- +......+.+++ +.|+|- ..||.. ++++++.+.++ +.++..++++.-.
T Consensus 136 ~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~-~~~~i~~~~~~~~~Pl~~n~~~~~~ 214 (292)
T PRK11320 136 VDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT-ELEMYRRFADAVKVPILANITEFGA 214 (292)
T ss_pred HHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC-CHHHHHHHHHhcCCCEEEEeccCCC
Confidence 5544444442 444555442 111111222232 369985 578854 67888777653 4555545543211
Q ss_pred eccccCCCcccHHHHHhcCCCEEe
Q 025169 170 TETISSLDIHHFVDLYKAQHPLVL 193 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~v~l 193 (257)
. ...++.+|.+.|+++.+
T Consensus 215 ~------p~~s~~~L~~lGv~~v~ 232 (292)
T PRK11320 215 T------PLFTTEELASAGVAMVL 232 (292)
T ss_pred C------CCCCHHHHHHcCCcEEE
Confidence 0 22468999999998654
No 463
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=28.82 E-value=2.6e+02 Score=26.24 Aligned_cols=71 Identities=11% Similarity=-0.064 Sum_probs=42.0
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|-+......+.. +..+..+..+.+.+..... .+.+.+.| + ..++.+.+. ++.+++++.|-
T Consensus 195 ~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~a~~~G~~~~mv~~~~~G----~--~~~~~l~~~-~~~~lpihaHr 265 (407)
T TIGR03332 195 EVLQEVYEQTGHKTLYAVNLTG--RTFDLKDKAKRAAELGADVLLFNVFAYG----L--DVLQSLAED-DEIPVPIMAHP 265 (407)
T ss_pred HHHHHHHHHHCCcceEeecCCC--CHHHHHHHHHHHHHhCCCEEEEeccccC----h--HHHHHHHhc-CCCCcEEEEec
Confidence 3344778889988877777664 3556777878777655432 22222222 1 224433332 35689999995
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 266 a 266 (407)
T TIGR03332 266 A 266 (407)
T ss_pred C
Confidence 4
No 464
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=28.72 E-value=4.7e+02 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=38.3
Q ss_pred hcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHHcC-Cceeee
Q 025169 45 NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-LQITLH 118 (257)
Q Consensus 45 ~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~~g-l~v~~H 118 (257)
++.+++|=+..++..+.. +.+++.+..+.+.+...+ ++-+....+. |..+...+++.+ ++++.|
T Consensus 185 ~a~~eTG~~~~y~~Nita--~~~em~~ra~~a~~~Ga~---~vMv~~~~~G-----~~~~~~l~~~~~~l~i~aH 249 (364)
T cd08210 185 EANAETGGRTLYAPNVTG--PPTQLLERARFAKEAGAG---GVLIAPGLTG-----LDTFRELAEDFDFLPILAH 249 (364)
T ss_pred HHHhhcCCcceEEEecCC--CHHHHHHHHHHHHHcCCC---EEEeecccch-----HHHHHHHHhcCCCcEEEEc
Confidence 677888888877777775 356777777777665443 2222211111 122233355678 999999
No 465
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.67 E-value=4.6e+02 Score=24.00 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=46.1
Q ss_pred eEEEeccC-CCCCCChhcHHHHHHHHHHc-----CCceeeecC-CCCCHhhHHHHHhcCCcEEeecccc-cHHHHHHHh
Q 025169 84 VVGIDLSG-NPTKGEWTTFLPALKFAREQ-----GLQITLHCG-EIPNKEEIQSMLDFLPQRIGHACCF-EEEEWRKLK 154 (257)
Q Consensus 84 vvg~~l~g-~~~~~~~~~~~~~~~~A~~~-----gl~v~~Ha~-E~~~~~~i~~~l~lg~~ri~Hg~~l-~~~~~~~l~ 154 (257)
+-.+-+.| .|...+++.+.++++..++. +.-+++-+. ++-..+.+....++|.+|+.-|++- +++.++.+.
T Consensus 59 v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~ 137 (378)
T PRK05660 59 VHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG 137 (378)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC
Confidence 44444544 45556788999999988773 445666553 2223344555556899999999875 677666664
No 466
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=28.63 E-value=3.4e+02 Score=22.49 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=38.7
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEEeecc-cccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIGHAC-CFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri~Hg~-~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.++++|..+.+...+..... -+...+..+++-+.-.- ..++..++.+.++|++++..
T Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~ 84 (264)
T cd06274 16 RIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYYLCQKAGLPVVAL 84 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEe
Confidence 4455566778889998888766432221 12233345777655432 22344477888889987654
No 467
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=28.61 E-value=2.4e+02 Score=24.39 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=55.5
Q ss_pred ccccCCCch---hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc--CCCCC--CChhcH
Q 025169 29 IDVRRPVNT---KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS--GNPTK--GEWTTF 101 (257)
Q Consensus 29 ~~~~~~~~~---~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~--g~~~~--~~~~~~ 101 (257)
-|+.|++.. +.+..+++..++.||++-|.+ + |+ .+.++.+.+...+ .|=+... +.-.. ....+|
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi---D---Pd--~~qi~~A~~~GAd-~VELhTG~Ya~a~~~~~~~~el 168 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFI---D---PD--PEQIEAAKEVGAD-RVELHTGPYANAYDKAEREAEL 168 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe---C---CC--HHHHHHHHHhCcC-EEEEechhhhcCCCchhHHHHH
Confidence 344566643 456677788889999987763 2 22 2344555555544 3333221 11111 112234
Q ss_pred HHH---HHHHHHcCCceeeecCCCCCHhhHHHHHhc-CC--cEEeecccc
Q 025169 102 LPA---LKFAREQGLQITLHCGEIPNKEEIQSMLDF-LP--QRIGHACCF 145 (257)
Q Consensus 102 ~~~---~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l-g~--~ri~Hg~~l 145 (257)
.++ .+.|++.|+. +|||=.-+.+++...... +. -.|||.+..
T Consensus 169 ~~i~~aa~~a~~~GL~--VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 169 ERIAKAAKLARELGLG--VNAGHGLNYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred HHHHHHHHHHHHcCCE--EecCCCCCHHHHHHHHhCCCCeEEccCHHHHH
Confidence 444 4445555555 588765566666544433 22 468998643
No 468
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.52 E-value=3.9e+02 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.8
Q ss_pred ChhcHHHHHHHHHHcCCceeeecCC
Q 025169 97 EWTTFLPALKFAREQGLQITLHCGE 121 (257)
Q Consensus 97 ~~~~~~~~~~~A~~~gl~v~~Ha~E 121 (257)
+.+.++.+.+.+++.|+++..=..+
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4477888899999999999876543
No 469
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=28.51 E-value=3.1e+02 Score=23.71 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred cccccCCCch---hhhhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecc--CCCCCC--Chhc
Q 025169 28 SIDVRRPVNT---KNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS--GNPTKG--EWTT 100 (257)
Q Consensus 28 ~~~~~~~~~~---~~~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~vvg~~l~--g~~~~~--~~~~ 100 (257)
.-|+.|++.. +.+..+++..++.||++-|.+ + |+ .+.++.+.+...+ .|=+... +..... ...+
T Consensus 97 lTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi---D---P~--~~qi~~A~~~GAd-~VELhTG~YA~a~~~~~~~~e 167 (237)
T TIGR00559 97 VTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFI---D---AD--KDQISAAAEVGAD-RIEIHTGPYANAYNKKEMAEE 167 (237)
T ss_pred ccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEe---C---CC--HHHHHHHHHhCcC-EEEEechhhhcCCCchhHHHH
Confidence 3344566643 456677778888999988772 2 22 3345555555544 3333221 111110 1123
Q ss_pred HHH---HHHHHHHcCCceeeecCCCCCHhhHHHHHhc-C-C--cEEeeccc
Q 025169 101 FLP---ALKFAREQGLQITLHCGEIPNKEEIQSMLDF-L-P--QRIGHACC 144 (257)
Q Consensus 101 ~~~---~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~l-g-~--~ri~Hg~~ 144 (257)
+.+ +.+.|++.|+ .+|||=.-+..++...... + . -.|||.+.
T Consensus 168 l~~i~~aa~~A~~lGL--~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsii 216 (237)
T TIGR00559 168 LQRIVKASVHAHSLGL--KVNAGHGLNYHNVKYFAEILPYLDELNIGHAII 216 (237)
T ss_pred HHHHHHHHHHHHHcCC--EEecCCCCCHHhHHHHHhCCCCceEEecCHHHH
Confidence 444 4444555554 5588765566666554443 2 2 36899864
No 470
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=28.43 E-value=3.9e+02 Score=23.06 Aligned_cols=66 Identities=9% Similarity=-0.022 Sum_probs=40.1
Q ss_pred ccceeeeecc-CccccccCCCchhhhhhHhhcccCCCcEEEEEEEeeCCC--CH---HHHHHHHHHHHhhCCCceE
Q 025169 16 AVSAVDVDFA-SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRE--TT---EAAMETVKLALEMRDLGVV 85 (257)
Q Consensus 16 ~v~y~E~r~~-p~~~~~~~~~~~~~~~~~~~a~~~~gir~~li~~~~r~~--~~---e~~~~~~~~~~~~~~~~vv 85 (257)
.+..+|||.+ |.....+|+...++ ..++++.|+.++-|-.+.+.. ++ .++....+.+.....+-+|
T Consensus 30 g~s~VeiRndl~~~~I~dg~p~a~v----ka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLv 101 (272)
T COG4130 30 GLSKVEIRNDLPSNAIADGTPAAEV----KALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALV 101 (272)
T ss_pred CcceeEEecCCCcccccCCCCHHHH----HHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEE
Confidence 4788999999 55455566664443 245788899988887777632 22 3344454544444444333
No 471
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=28.05 E-value=4.5e+02 Score=23.74 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhccceeeeecc-CccccccCCCchhhhhhHhhcc----c------CCCcEEEEEEEeeCCCCHHHHHH
Q 025169 3 KRSYMDAVVEGLRAVSAVDVDFA-SRSIDVRRPVNTKNMNDACNGT----R------GKKIYVRLLLSIDRRETTEAAME 71 (257)
Q Consensus 3 ~~~y~~~~~~~~~~v~y~E~r~~-p~~~~~~~~~~~~~~~~~~~a~----~------~~gir~~li~~~~r~~~~e~~~~ 71 (257)
.++|++.+-..-.-+-|+|+=++ |+.-..+....++.+.++++++ . ..++-+++... .+.+...+
T Consensus 153 ~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~----~~~~~i~~ 228 (335)
T TIGR01036 153 KEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPD----LTESDLED 228 (335)
T ss_pred HHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCC----CCHHHHHH
Confidence 46788777665333679999998 7754333344555555544332 2 13444454432 22234555
Q ss_pred HHHHHHhhCCCceEEEe
Q 025169 72 TVKLALEMRDLGVVGID 88 (257)
Q Consensus 72 ~~~~~~~~~~~~vvg~~ 88 (257)
.++.+.+...++++.+.
T Consensus 229 ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 229 IADSLVELGIDGVIATN 245 (335)
T ss_pred HHHHHHHhCCcEEEEEC
Confidence 66656655555555443
No 472
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=27.85 E-value=4e+02 Score=22.98 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCCCCC
Q 025169 147 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG 199 (257)
Q Consensus 147 ~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~ 199 (257)
++..++++...+ .++|+..- +++ ..+-+.+..|+|| |.||.++
T Consensus 254 ~~~~~~~~~ad~--~v~~s~~e------~~~-~~~~Ea~a~G~Pv-I~~~~~~ 296 (360)
T cd04951 254 DDIAAYYNAADL--FVLSSAWE------GFG-LVVAEAMACELPV-VATDAGG 296 (360)
T ss_pred ccHHHHHHhhce--EEeccccc------CCC-hHHHHHHHcCCCE-EEecCCC
Confidence 345566766665 34564321 112 2467889999998 5678654
No 473
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=27.67 E-value=3.5e+02 Score=22.74 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=38.6
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCC-CHh----hHHHHHhcCCcEEe-ecccccH-HHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIP-NKE----EIQSMLDFLPQRIG-HACCFEE-EEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~-~~~----~i~~~l~lg~~ri~-Hg~~l~~-~~~~~l~~~~i~v~~c 163 (257)
.....+-+.|+++|..+.+..++.. +.+ .+..++..+++-|. .....+. +.+..+.++|++++..
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~ 87 (268)
T cd06306 16 SVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEe
Confidence 3445566778899999888765432 222 23344456777543 3322222 1367778899998754
No 474
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=27.67 E-value=2.8e+02 Score=25.66 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=43.3
Q ss_pred hhhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeee
Q 025169 40 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 118 (257)
Q Consensus 40 ~~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~H 118 (257)
++++-++.+++|-+......+.. +.++..+..+.+.+..... .+.+...| + ..++.+.+.. +.+++++.|
T Consensus 182 ~~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~~~~~G~~~~mv~~~~~G----~--~~l~~l~~~~-~~~l~IhaH 252 (366)
T cd08148 182 AAALDRVQEETGEKKLYAVNVTA--GTFEIIERAERALELGANMLMVDVLTAG----F--SALQALAEDF-EIDLPIHVH 252 (366)
T ss_pred HHHHHHHHHhhCCcceEEEEccC--CHHHHHHHHHHHHHhCCCEEEEeccccc----h--HHHHHHHHhC-cCCcEEEec
Confidence 34444778889988877777775 4577778878777665442 22222222 1 2244443332 269999999
Q ss_pred cC
Q 025169 119 CG 120 (257)
Q Consensus 119 a~ 120 (257)
-+
T Consensus 253 rA 254 (366)
T cd08148 253 RA 254 (366)
T ss_pred cc
Confidence 54
No 475
>PLN02828 formyltetrahydrofolate deformylase
Probab=27.65 E-value=2.8e+02 Score=24.45 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCceeeecC--CCCCHhhHHHHHhcCCcEEe---ecccccHHHHHHHhcCCCcEEecccccceeccccCCC
Q 025169 103 PALKFAREQGLQITLHCG--EIPNKEEIQSMLDFLPQRIG---HACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLD 177 (257)
Q Consensus 103 ~~~~~A~~~gl~v~~Ha~--E~~~~~~i~~~l~lg~~ri~---Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~ 177 (257)
.+.+.|+++|+|++..-. ++.....+.+.+. ++|.+. =+-.++++.++....+=|.+= |+ .|-.++ |
T Consensus 114 ~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~-~~DliVLAgym~IL~~~~l~~~~~riINIH--pS---lLP~f~--G 185 (268)
T PLN02828 114 HVMRFLERHGIPYHYLPTTKENKREDEILELVK-GTDFLVLARYMQILSGNFLKGYGKDIINIH--HG---LLPSFK--G 185 (268)
T ss_pred hHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh-cCCEEEEeeehHhCCHHHHhhccCCEEEec--Cc---cCCCCC--C
Confidence 456778999999874322 2222223344443 677643 333458888888765433321 21 111122 5
Q ss_pred cccHHHHHhcCCCEEe
Q 025169 178 IHHFVDLYKAQHPLVL 193 (257)
Q Consensus 178 ~~pi~~l~~~Gv~v~l 193 (257)
.+|+.+.+++|++++=
T Consensus 186 a~p~~~Ai~~Gvk~tG 201 (268)
T PLN02828 186 GNPSKQAFDAGVKLIG 201 (268)
T ss_pred CcHHHHHHHcCCCeEE
Confidence 6899999999998643
No 476
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=27.64 E-value=3.3e+02 Score=25.60 Aligned_cols=71 Identities=13% Similarity=-0.060 Sum_probs=41.4
Q ss_pred hhHhhcccCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 41 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 41 ~~~~~a~~~~gir~~li~~~~r~~~~e~~~~~~~~~~~~~~~~-vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+++-++.+++|-+......+.. +.++..+..+.+.+..... .+.+...| + ..++.+.+. .+.+++++.|-
T Consensus 190 ~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~a~~~G~~~~m~~~~~~G----~--~al~~l~~~-~~~~lpIhaHr 260 (407)
T PRK09549 190 EVLQEVYETTGHKTLYAVNLTG--RTFELKEKAKRAAEAGADALLFNVFAYG----L--DVLQSLAED-PEIPVPIMAHP 260 (407)
T ss_pred HHHHHHHHhhCCcceEEEecCC--CHHHHHHHHHHHHHcCCCeEEEeccccc----h--HHHHHHHhc-CCCCcEEEecC
Confidence 3344778889988877777775 3567777778777654432 12222222 1 224433221 24588988885
Q ss_pred C
Q 025169 120 G 120 (257)
Q Consensus 120 ~ 120 (257)
+
T Consensus 261 a 261 (407)
T PRK09549 261 A 261 (407)
T ss_pred C
Confidence 3
No 477
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.62 E-value=3.9e+02 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=13.9
Q ss_pred hcHHHHHHHHHHcCCceeeec
Q 025169 99 TTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha 119 (257)
+.++++.+.|++.|+.+.++-
T Consensus 123 ~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 123 EALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHhccCCCCEEEEeC
Confidence 345566666777788877764
No 478
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=27.49 E-value=3.5e+02 Score=22.58 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=37.0
Q ss_pred hcHHHHHHHHHHc-CCceeeecCCCCCHh----hHHHHHhcCCcEE-eeccccc--HHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQ-GLQITLHCGEIPNKE----EIQSMLDFLPQRI-GHACCFE--EEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~-gl~v~~Ha~E~~~~~----~i~~~l~lg~~ri-~Hg~~l~--~~~~~~l~~~~i~v~~c 163 (257)
.....+-+.+++. |..+.++.... +.. .+..++..+++-| -.+...+ ++.++.+.+.|++++.+
T Consensus 16 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 16 AMNDEIQREASNYPDVELIIADAAD-DNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL 87 (270)
T ss_pred HHHHHHHHHHHhcCCcEEEEEcCCC-CHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEe
Confidence 3345555667775 88887775432 222 2333444577643 3333333 45678888899998765
No 479
>PRK10307 putative glycosyl transferase; Provisional
Probab=27.07 E-value=4.7e+02 Score=23.64 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=35.6
Q ss_pred cCCCCCHhhHHHHHh-cCCcEE-eecccccHHHHHHHhcCCCcEEecccccceeccccCCCccc--HHHHHhcCCCEEec
Q 025169 119 CGEIPNKEEIQSMLD-FLPQRI-GHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH--FVDLYKAQHPLVLC 194 (257)
Q Consensus 119 a~E~~~~~~i~~~l~-lg~~ri-~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~p--i~~l~~~Gv~v~lg 194 (257)
+|+....+.+++.++ ++.+++ =+|..-.++..++++...+.+ .|+.+-..+ ...| +.+++..|+|| |+
T Consensus 265 vG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v--~ps~~e~~~-----~~~p~kl~eama~G~PV-i~ 336 (412)
T PRK10307 265 CGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHL--LPQKAGAAD-----LVLPSKLTNMLASGRNV-VA 336 (412)
T ss_pred ECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeE--EeeccCccc-----ccCcHHHHHHHHcCCCE-EE
Confidence 344333334443332 344332 234322344456666666654 354321111 1123 56889999999 67
Q ss_pred CCCCC
Q 025169 195 TDDSG 199 (257)
Q Consensus 195 TD~~~ 199 (257)
||.++
T Consensus 337 s~~~g 341 (412)
T PRK10307 337 TAEPG 341 (412)
T ss_pred EeCCC
Confidence 76543
No 480
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=27.02 E-value=66 Score=28.96 Aligned_cols=108 Identities=10% Similarity=-0.033 Sum_probs=55.6
Q ss_pred ccHHHHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCCEEecCC-CCCCCC-CChHHHHHHHHHhCCCCHHH
Q 025169 145 FEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTD-DSGVFS-TSVSREYDLAASAFSLGRRE 222 (257)
Q Consensus 145 l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD-~~~~~~-~~l~~E~~~a~~~~~ls~~~ 222 (257)
++++.++.+++.|..+.....-|-.- .+.+....-++.+.++|++|.+.|= ..+.++ .+-..++...+...|..+--
T Consensus 191 it~el~~~L~~~~~~~~~~~h~dh~~-Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyy 269 (321)
T TIGR03821 191 ITSGLCDLLANSRLQTVLVVHINHAN-EIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYY 269 (321)
T ss_pred hhHHHHHHHHhcCCcEEEEeeCCChH-hCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCc
Confidence 46788888888775544322222110 0001011237788899998876654 222232 23334444444445666655
Q ss_pred HHHHH-HHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 223 MFQLA-KSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 223 v~~~~-~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+..+- ..+.+...++.++-.++.+.+.+..+
T Consensus 270 l~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~s 301 (321)
T TIGR03821 270 LHLLDKVQGAAHFDVDDERARALMAELLARLP 301 (321)
T ss_pred ccccCCCCCcccccCCHHHHHHHHHHHHHhCC
Confidence 55542 22334445666666666666655443
No 481
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=26.68 E-value=3.3e+02 Score=22.84 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHcCCceee--e---cC-CCCCHhhHHH-HHhcCCcEEeeccc---ccHHHHHHHhcCCCcEEecccccce
Q 025169 100 TFLPALKFAREQGLQITL--H---CG-EIPNKEEIQS-MLDFLPQRIGHACC---FEEEEWRKLKSSKIPVEICLTSNIR 169 (257)
Q Consensus 100 ~~~~~~~~A~~~gl~v~~--H---a~-E~~~~~~i~~-~l~lg~~ri~Hg~~---l~~~~~~~l~~~~i~v~~cP~SN~~ 169 (257)
.-..-.+.|.++|+|+.+ | ++ +. .+.++.+ .+++|+|.+-=+=| ++++.+..+-.+ .+-+-|. .
T Consensus 46 ~~~~GL~rA~~~gIPt~vip~k~~a~R~~-~d~eL~~~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~--iiNIHPa---L 119 (206)
T KOG3076|consen 46 KGVYGLERAADAGIPTLVIPHKRFASREK-YDNELAEVLLELGTDLVCLAGYMRILSGEFLSQLPKR--IINIHPA---L 119 (206)
T ss_pred ccchhhhHHHHCCCCEEEecccccccccc-CcHHHHHHHHHhCCCEEEehhhHHHcCHHHHhhcccc--eEecccc---c
Confidence 344556788899998754 3 21 11 1233433 34578887654433 478888777655 2222232 2
Q ss_pred eccccCCCcccHHHHHhcCCCEEecC
Q 025169 170 TETISSLDIHHFVDLYKAQHPLVLCT 195 (257)
Q Consensus 170 l~~~~~~~~~pi~~l~~~Gv~v~lgT 195 (257)
+.+|+ |.|+++..+++|++.+=+|
T Consensus 120 lpaFk--G~~a~k~Aleagv~~~Gct 143 (206)
T KOG3076|consen 120 LPAFK--GLHAIKQALEAGVKLSGCT 143 (206)
T ss_pred ccccC--CchHHHHHHHhccccccce
Confidence 33343 6789999999998776554
No 482
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=26.66 E-value=3.7e+02 Score=22.28 Aligned_cols=52 Identities=23% Similarity=0.124 Sum_probs=34.9
Q ss_pred cCCcEEeecccccHHHHHHHhcCC---CcEEecccccceeccccCCCcccHHHHHhcCCCEEecC
Q 025169 134 FLPQRIGHACCFEEEEWRKLKSSK---IPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCT 195 (257)
Q Consensus 134 lg~~ri~Hg~~l~~~~~~~l~~~~---i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~v~lgT 195 (257)
.|.....|+.....+.++.+++.+ ..+.||= .+ ...-+.++++.|+-++++.
T Consensus 120 ~~~pv~iH~~~~~~~~~~~l~~~~~~~~~i~H~~-----~~-----~~~~~~~~~~~g~~~~~~~ 174 (252)
T TIGR00010 120 LNLPVIIHARDAEEDVLDILREEKPKVGGVLHCF-----TG-----DAELAKKLLDLGFYISISG 174 (252)
T ss_pred hCCCeEEEecCccHHHHHHHHhcCCCCCEEEEcc-----CC-----CHHHHHHHHHCCCeEeece
Confidence 577788999887778888887653 2334441 11 1123677888999888885
No 483
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=26.43 E-value=3.9e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=31.6
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEEe
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 140 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri~ 140 (257)
.+.++++.+..++.|+++..-.. ++++.+..+.++|+++|.
T Consensus 110 ~~~l~~~i~~L~~~gIrvSLFiD--P~~~qi~~A~~~Gad~VE 150 (239)
T PF03740_consen 110 RDRLKPVIKRLKDAGIRVSLFID--PDPEQIEAAKELGADRVE 150 (239)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeC--CCHHHHHHHHHcCCCEEE
Confidence 46788999999999999999883 456778888889999985
No 484
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=26.36 E-value=1.6e+02 Score=29.65 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=61.6
Q ss_pred eee-eeccCccccccCC-----Cc------------hhhhhhHhhcccCCCcEEEEEEEee---C----C--CCH----H
Q 025169 19 AVD-VDFASRSIDVRRP-----VN------------TKNMNDACNGTRGKKIYVRLLLSID---R----R--ETT----E 67 (257)
Q Consensus 19 y~E-~r~~p~~~~~~~~-----~~------------~~~~~~~~~a~~~~gir~~li~~~~---r----~--~~~----e 67 (257)
++| +|+.|-.+-.+.. .+ .+.+..+++.+++.|+-+|+..-.- + . ..| +
T Consensus 173 ~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVe 252 (733)
T PLN02925 173 CFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVE 252 (733)
T ss_pred hcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHH
Confidence 345 8888865555432 11 1233447788888887777764211 1 1 122 4
Q ss_pred HHHHHHHHHHhhCCC-ceEEEeccCCCCCCChhcHHHHHHHHHH--cCCceeeecCCCCCHh--hHHHHHhcCC---cEE
Q 025169 68 AAMETVKLALEMRDL-GVVGIDLSGNPTKGEWTTFLPALKFARE--QGLQITLHCGEIPNKE--EIQSMLDFLP---QRI 139 (257)
Q Consensus 68 ~~~~~~~~~~~~~~~-~vvg~~l~g~~~~~~~~~~~~~~~~A~~--~gl~v~~Ha~E~~~~~--~i~~~l~lg~---~ri 139 (257)
.+.+.++.+.+..-. .++. +-..........++.++....+ ...|+|+...|....+ -++.++.+|. +-|
T Consensus 253 SAle~~~i~e~~~f~diviS--~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~edg~IKSAigiGaLL~DGI 330 (733)
T PLN02925 253 SAFEFARICRKLDYHNFVFS--MKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 330 (733)
T ss_pred HHHHHHHHHHHCCCCcEEEE--EEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCcCceehhHHHHHHHHhcCC
Confidence 455666666654322 2333 2221111122333444443333 4678888777774322 2455555443 455
Q ss_pred eecccc
Q 025169 140 GHACCF 145 (257)
Q Consensus 140 ~Hg~~l 145 (257)
|=++.+
T Consensus 331 GDTIRV 336 (733)
T PLN02925 331 GDTIRV 336 (733)
T ss_pred ccEEEE
Confidence 555444
No 485
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.21 E-value=4.9e+02 Score=23.81 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=44.3
Q ss_pred CchhhhhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCC-ceEEEecc-CCCCCC-ChhcHHHHHHHHH
Q 025169 35 VNTKNMNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDL-GVVGIDLS-GNPTKG-EWTTFLPALKFAR 109 (257)
Q Consensus 35 ~~~~~~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~-~vvg~~l~-g~~~~~-~~~~~~~~~~~A~ 109 (257)
++++++++..+-.+..+=++.+=+.+.+. .+++++.+..+++...... .++-+... +.++.. +.+.+.+..+..+
T Consensus 232 ~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~ 311 (345)
T PRK14466 232 SIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLT 311 (345)
T ss_pred CHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 34445544433223344455444444442 3578888888877644321 12222211 222222 3455666677778
Q ss_pred HcCCceeeec
Q 025169 110 EQGLQITLHC 119 (257)
Q Consensus 110 ~~gl~v~~Ha 119 (257)
++|+.+++--
T Consensus 312 ~~gi~~tvR~ 321 (345)
T PRK14466 312 SHGVFTTIRA 321 (345)
T ss_pred HCCCcEEEeC
Confidence 8899888864
No 486
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=26.15 E-value=3.7e+02 Score=23.09 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=56.5
Q ss_pred cccccCCCchhhhhhHhhcccCCC--cEEEEEEEeeCC-----CCHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhc
Q 025169 28 SIDVRRPVNTKNMNDACNGTRGKK--IYVRLLLSIDRR-----ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTT 100 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~a~~~~g--ir~~li~~~~r~-----~~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~ 100 (257)
.|+.+++.+...|+. .+.+.| +++.+-+.+... .+|++..+.++.+..+..=.++|+---+ |.+.+++.
T Consensus 97 ihSlDr~klA~~l~k---ra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ip-p~~~d~~~ 172 (228)
T COG0325 97 IHSLDRLKLAKELNK---RALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMTIP-PLTDDPEE 172 (228)
T ss_pred eeecCHHHHHHHHHH---HHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeC-CCCCCHHH
Confidence 344455555555554 233333 666555555442 3578888888887776654467754323 33444444
Q ss_pred HHHHHHHHHH-------cCCceeeecCCCC--CHhhHHHHHhcCCc--EEeecc
Q 025169 101 FLPALKFARE-------QGLQITLHCGEIP--NKEEIQSMLDFLPQ--RIGHAC 143 (257)
Q Consensus 101 ~~~~~~~A~~-------~gl~v~~Ha~E~~--~~~~i~~~l~lg~~--ri~Hg~ 143 (257)
....|+..++ .+. |+.|.+ -..+...|++.|++ |||-.+
T Consensus 173 ~~~~F~~l~~l~~~l~~~~~----~~~~LSMGMS~D~e~AI~~GaT~VRIGtai 222 (228)
T COG0325 173 IFAVFRKLRKLFDELKAKYP----PIDELSMGMSNDYEIAIAEGATMVRIGTAI 222 (228)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCCeecCcCcccHHHHHHcCCCEEEEcHHh
Confidence 4444333322 222 444432 12345678888885 665433
No 487
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=26.13 E-value=72 Score=23.38 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=26.3
Q ss_pred ceEEEeccCCCCCCChhcHHHHHHHHHHcCCceeeecCCC
Q 025169 83 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 122 (257)
Q Consensus 83 ~vvg~~l~g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha~E~ 122 (257)
.++.+++.- ..-.....++.+.|+++|+++.+|..|+
T Consensus 20 d~~~~~~~~---~GGit~~~~i~~~A~~~gi~~~~h~~~~ 56 (111)
T PF13378_consen 20 DIVQIDPTR---CGGITEALRIAALAEAHGIPVMPHSMES 56 (111)
T ss_dssp SEEEEBHHH---HTSHHHHHHHHHHHHHTT-EEEEBSSSS
T ss_pred CEEEeCchh---cCCHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 367777641 1134578899999999999999999744
No 488
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=26.10 E-value=3.7e+02 Score=22.12 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=39.1
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHh---hHHHHHhcCCcEEe-ecccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIG-HACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~---~i~~~l~lg~~ri~-Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.++++|..+.+......... .+..++..+++-+. -+...++..++.+.+.|++++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEI 84 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 4455666778889998888765432211 22333444666432 23333456678888889988764
No 489
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=26.08 E-value=5.2e+02 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=33.0
Q ss_pred hhcHHHHHHH-HHHcCCc------eeeecCCCCCHhhHHHHHhcCCcEEeecccc
Q 025169 98 WTTFLPALKF-AREQGLQ------ITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 145 (257)
Q Consensus 98 ~~~~~~~~~~-A~~~gl~------v~~Ha~E~~~~~~i~~~l~lg~~ri~Hg~~l 145 (257)
.+.++++-+. .+..++| +.+|=|-..+.+.++.++.+|..-|.-++.+
T Consensus 236 ~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl 290 (357)
T TIGR01520 236 PDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDT 290 (357)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHH
Confidence 3445555433 3455887 9999876656678899999998776655544
No 490
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.04 E-value=3.5e+02 Score=21.82 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=52.2
Q ss_pred hcHHHHHHHHHHcCCceee--ecCCCCCHhhHHHHHhcCCcEEe--ecc-------cccHHHHHHHhc-CCCcEEecccc
Q 025169 99 TTFLPALKFAREQGLQITL--HCGEIPNKEEIQSMLDFLPQRIG--HAC-------CFEEEEWRKLKS-SKIPVEICLTS 166 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~--Ha~E~~~~~~i~~~l~lg~~ri~--Hg~-------~l~~~~~~~l~~-~~i~v~~cP~S 166 (257)
+...++.+.++++|+++-+ +...+ +.+...+...|++.+. .+. ....+.++.+.+ .++++..++.-
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t--~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI 167 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVED--PEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGI 167 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 4577888999999988874 55443 5555556666776532 221 123456666664 34555444322
Q ss_pred cceeccccCCCcccHHHHHhcCCC-EEecCC
Q 025169 167 NIRTETISSLDIHHFVDLYKAQHP-LVLCTD 196 (257)
Q Consensus 167 N~~l~~~~~~~~~pi~~l~~~Gv~-v~lgTD 196 (257)
....+.++++.|+. +.+||-
T Consensus 168 ----------~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 168 ----------TPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred ----------CHHHHHHHHhcCCCEEEEeeh
Confidence 22458899999997 566654
No 491
>PRK13820 argininosuccinate synthase; Provisional
Probab=25.92 E-value=1.8e+02 Score=27.09 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=78.2
Q ss_pred hhcHHHHHHHHHHcCCceeeecCCCCCHhhH-----HHHHhcCCc-EEeeccccc-HHHHHHHhcCCCcEEecc---cc-
Q 025169 98 WTTFLPALKFAREQGLQITLHCGEIPNKEEI-----QSMLDFLPQ-RIGHACCFE-EEEWRKLKSSKIPVEICL---TS- 166 (257)
Q Consensus 98 ~~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i-----~~~l~lg~~-ri~Hg~~l~-~~~~~~l~~~~i~v~~cP---~S- 166 (257)
+..++.+.+.|++.|....+|..=..+.+.+ ..+++++.- -+.. ..++ ++.+++.+++|+++...+ -|
T Consensus 95 ~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~~l~viaP~re-~~ltK~ei~~ya~~~gip~~~~~~~~yS~ 173 (394)
T PRK13820 95 PLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRASDLEVIAPIRE-LNLTREWEIEYAKEKGIPVPVGKEKPWSI 173 (394)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhhcCeeeCchhc-cCCCHHHHHHHHHHcCCCCCcCCCCCccc
Confidence 4456778888999999999996522211111 122222210 0000 1234 566788889999885433 22
Q ss_pred --cceecc-----ccCCCcccHHH--------------------HHhcCCCEEecCCCCCCCCCChHHHHHHHHHhCCC-
Q 025169 167 --NIRTET-----ISSLDIHHFVD--------------------LYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL- 218 (257)
Q Consensus 167 --N~~l~~-----~~~~~~~pi~~--------------------l~~~Gv~v~lgTD~~~~~~~~l~~E~~~a~~~~~l- 218 (257)
|++-.+ ..+....|-.. =+++|+||+|+ +-.+....++..+......+|+
T Consensus 174 d~nlw~~s~e~g~ledp~~~~p~~~~~~t~~p~~~p~~p~~v~i~F~~G~pv~ln--g~~~~~~~li~~lN~i~g~~GvG 251 (394)
T PRK13820 174 DENLWSRSIEGGKLEDPAFEPPEEIYAWTVSPEDAPDEPEIVEIEFEEGVPVAIN--GEKMDGVELIRKLNEIAGKHGVG 251 (394)
T ss_pred ccccccccccccccCCCCcCcchHHHhccCCHhHCCCCCeEEEEEEEccEEEEEC--CeeCCHHHHHHHHHHHHhhcccC
Confidence 443211 11111111111 14789999994 3332234666666555544432
Q ss_pred --------------------CHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 025169 219 --------------------GRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 253 (257)
Q Consensus 219 --------------------s~~~v~~~~~n~~~~~~~~~~~k~~l~~~~~~~~~ 253 (257)
+...++-.+...++..-++.++. .+...+...+.
T Consensus 252 r~d~ve~r~vG~KsR~vyE~P~~~iL~~Ah~~LE~~~l~~~~~-~~k~~~~~~~~ 305 (394)
T PRK13820 252 RTDMMEDRVLGLKSRENYEHPAATVLLTAHKALEQLVLTREEL-KFKEIVDSKWA 305 (394)
T ss_pred ccccccccccccccceeecChHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHH
Confidence 33455666777777777766432 23334444333
No 492
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=25.77 E-value=4.4e+02 Score=22.86 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=51.2
Q ss_pred hcccCCCcEEEE--EEEeeCCCCHHHHHHHHHHHHhhCCCce--EEEe-ccCCCCC----CChhcHHHHHHHHHHc--CC
Q 025169 45 NGTRGKKIYVRL--LLSIDRRETTEAAMETVKLALEMRDLGV--VGID-LSGNPTK----GEWTTFLPALKFAREQ--GL 113 (257)
Q Consensus 45 ~a~~~~gir~~l--i~~~~r~~~~e~~~~~~~~~~~~~~~~v--vg~~-l~g~~~~----~~~~~~~~~~~~A~~~--gl 113 (257)
+-.++.|+|+.- ++++.-. ...--.+.++....|..+-+ +++- ..|.... -++++..++++.||+. |
T Consensus 143 ~~L~e~~irvvpHitiGL~~g-ki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~- 220 (275)
T COG1856 143 LLLKENGIRVVPHITIGLDFG-KIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN- 220 (275)
T ss_pred HHHHHcCceeceeEEEEeccC-cccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-
Confidence 335667888743 3333321 11111344555555655532 2222 2232222 1347788889999986 5
Q ss_pred ceeeecCCCCCHhhH---HHHHhcCCcEEe
Q 025169 114 QITLHCGEIPNKEEI---QSMLDFLPQRIG 140 (257)
Q Consensus 114 ~v~~Ha~E~~~~~~i---~~~l~lg~~ri~ 140 (257)
++.+-|....+...+ ..++.+|+|+|.
T Consensus 221 pv~iGCmrP~Ge~rvk~d~~av~~gVd~It 250 (275)
T COG1856 221 PVSIGCMRPRGEWRVKLDKEAVLAGVDRIT 250 (275)
T ss_pred CeeEeecCcCchhHHHHHHHHHHcCCceee
Confidence 788877655444332 356668999985
No 493
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.76 E-value=2.9e+02 Score=20.69 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEeccCCCCCCChhcHHHHHHHHHH---cCCceeeecCCCCC-HhhHHHHHhcCCcEEe
Q 025169 65 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE---QGLQITLHCGEIPN-KEEIQSMLDFLPQRIG 140 (257)
Q Consensus 65 ~~e~~~~~~~~~~~~~~~~vvg~~l~g~~~~~~~~~~~~~~~~A~~---~gl~v~~Ha~E~~~-~~~i~~~l~lg~~ri~ 140 (257)
+++...+.++...... ++..+.+.+.+....+ .+.+.+..+.+ .+.++.++..-... .+.+....++|.+++.
T Consensus 29 ~~e~i~~~~~~~~~~~--~~~~i~~~~gep~~~~-~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~ 105 (166)
T PF04055_consen 29 SPEEILEEIKELKQDK--GVKEIFFGGGEPTLHP-DFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIR 105 (166)
T ss_dssp HHHHHHHHHHHHHHHT--THEEEEEESSTGGGSC-HHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHhHhc--CCcEEEEeecCCCcch-hHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEe
Confidence 4566666665553111 2333334443433333 34444444444 38888888754432 3445555567888888
Q ss_pred ecccc-cHH-HHHHHhcCCCcEEecccccceeccccCCCcccHHHHHhcCCC
Q 025169 141 HACCF-EEE-EWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 190 (257)
Q Consensus 141 Hg~~l-~~~-~~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~l~~~Gv~ 190 (257)
.++.. +++ ..+.+. ++...+ . -..-+..+.++|++
T Consensus 106 ~~l~s~~~~~~~~~~~-~~~~~~------~--------~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 106 ISLESLDEESVLRIIN-RGKSFE------R--------VLEALERLKEAGIP 142 (166)
T ss_dssp EEEBSSSHHHHHHHHS-STSHHH------H--------HHHHHHHHHHTTSE
T ss_pred cccccCCHHHhhhhhc-CCCCHH------H--------HHHHHHHHHHcCCC
Confidence 88765 444 333332 332210 0 11246778888887
No 494
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.72 E-value=4.1e+02 Score=22.45 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=46.9
Q ss_pred hcHHHHHHHHHHcCCceeeec-CCCCCHhhHHHHHh-cCC-cE-EeecccccHHHHHHHhcCCCcEEecccccceecccc
Q 025169 99 TTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLD-FLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 174 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha-~E~~~~~~i~~~l~-lg~-~r-i~Hg~~l~~~~~~~l~~~~i~v~~cP~SN~~l~~~~ 174 (257)
+.+.++++...+.+-.+.+|. |...........++ .+. .. .-+|..-.++..+++.+..+ .++|+.+- .
T Consensus 218 ~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~---~-- 290 (377)
T cd03798 218 DYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLRE---G-- 290 (377)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhc---c--
Confidence 445555555555444555554 32222233333332 332 22 33443323455677777665 45676552 1
Q ss_pred CCCcccHHHHHhcCCCEEecCCCC
Q 025169 175 SLDIHHFVDLYKAQHPLVLCTDDS 198 (257)
Q Consensus 175 ~~~~~pi~~l~~~Gv~v~lgTD~~ 198 (257)
++ ..+.+.+..|+|| |+||.+
T Consensus 291 -~~-~~~~Ea~~~G~pv-I~~~~~ 311 (377)
T cd03798 291 -FG-LVLLEAMACGLPV-VATDVG 311 (377)
T ss_pred -CC-hHHHHHHhcCCCE-EEecCC
Confidence 12 3578999999997 566654
No 495
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.79 E-value=4.9e+02 Score=23.41 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecc-CCCCCCChhcHHHHHHHHHHcCCceeeec
Q 025169 64 ETTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHC 119 (257)
Q Consensus 64 ~~~e~~~~~~~~~~~~~~~~vvg~~l~-g~~~~~~~~~~~~~~~~A~~~gl~v~~Ha 119 (257)
.++++..+.++.+.++. +..+.+. |.+.....+.+.++++..++.+..+++|+
T Consensus 70 ls~eeI~e~~~~~~~~G---~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG---ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred CCHHHHHHHHHHHHHCC---CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEe
Confidence 46677666666655432 2223333 32333355666777777777765566665
No 496
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=24.67 E-value=3.5e+02 Score=26.87 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=39.9
Q ss_pred hcccCCCcEE---EEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEE-EeccCCCCCCChhcHHHHHHHH---HHcCCce
Q 025169 45 NGTRGKKIYV---RLLLSIDR--RETTEAAMETVKLALEMRDLGVVG-IDLSGNPTKGEWTTFLPALKFA---REQGLQI 115 (257)
Q Consensus 45 ~a~~~~gir~---~li~~~~r--~~~~e~~~~~~~~~~~~~~~~vvg-~~l~g~~~~~~~~~~~~~~~~A---~~~gl~v 115 (257)
+|+.-.|+.. +.+. +.. +.+++..++.++...+-... +++ +..+|.-..+..+-+.++.+.+ +++|+.+
T Consensus 237 KAa~ilGlG~~~vv~Vp-vD~~~rmd~~~L~~~I~~~~~~g~p-~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~ 314 (608)
T TIGR03811 237 KAADIIGIGLDQVIPVP-VDSNYRMDINELEKIIRKLAAEKTP-ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYF 314 (608)
T ss_pred HHHHHcCCCcccEEEee-cCCCCcCCHHHHHHHHHHHHhcCCC-eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCce
Confidence 5666667752 2222 222 35677777777655443222 222 2345644444445566665555 7789988
Q ss_pred eeec
Q 025169 116 TLHC 119 (257)
Q Consensus 116 ~~Ha 119 (257)
.+|+
T Consensus 315 ~lHV 318 (608)
T TIGR03811 315 YLHV 318 (608)
T ss_pred eEee
Confidence 8887
No 497
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=24.66 E-value=19 Score=16.49 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=5.4
Q ss_pred CcEEeecc
Q 025169 136 PQRIGHAC 143 (257)
Q Consensus 136 ~~ri~Hg~ 143 (257)
++||.||.
T Consensus 7 adrishgf 14 (14)
T PF08187_consen 7 ADRISHGF 14 (14)
T ss_pred hhhhhcCC
Confidence 37787773
No 498
>PLN02866 phospholipase D
Probab=24.65 E-value=1.3e+02 Score=31.72 Aligned_cols=56 Identities=5% Similarity=0.121 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHhhccc-eeee---eccCccccccC--CCchhhhhhHhhcccCCCcEEEEE
Q 025169 2 SKRSYMDAVVEGLRAVS-AVDV---DFASRSIDVRR--PVNTKNMNDACNGTRGKKIYVRLL 57 (257)
Q Consensus 2 ~~~~y~~~~~~~~~~v~-y~E~---r~~p~~~~~~~--~~~~~~~~~~~~a~~~~gir~~li 57 (257)
+-+.|.+|+.++|++.+ ++-| -++|..|..+. -...+.+.++.....+-|++++++
T Consensus 341 DG~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAkrGVkVrVL 402 (1068)
T PLN02866 341 DGHAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAKQGVQIYIL 402 (1068)
T ss_pred CHHHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHHCCCEEEEE
Confidence 34789999999999754 3333 44566666542 234556666664445559999986
No 499
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=24.65 E-value=4e+02 Score=21.99 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=36.8
Q ss_pred hcHHHHHHHHHHcCCceeeecCCCCCHhhHHHHHhcCCcEE-eecccccHHHHHHHhcCCCcEEec
Q 025169 99 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHACCFEEEEWRKLKSSKIPVEIC 163 (257)
Q Consensus 99 ~~~~~~~~~A~~~gl~v~~Ha~E~~~~~~i~~~l~lg~~ri-~Hg~~l~~~~~~~l~~~~i~v~~c 163 (257)
..+..+-+.|++.|..+.++... .....+......+++-+ .-....++..++.+.+++++++..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~ 80 (261)
T cd06272 16 ELVTGINQAISKNGYNMNVSITP-SLAEAEDLFKENRFDGVIIFGESASDVEYLYKIKLAIPVVSY 80 (261)
T ss_pred HHHHHHHHHHHHcCCEEEEEecc-cHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 44556667778888888777543 11122223333466643 233333455577788888888654
No 500
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.50 E-value=5.5e+02 Score=23.47 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=45.1
Q ss_pred CCchhhhhhHhhcccCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCC-ceEEEeccC-CCCC-CChhcHHHHHHHH
Q 025169 34 PVNTKNMNDACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDL-GVVGIDLSG-NPTK-GEWTTFLPALKFA 108 (257)
Q Consensus 34 ~~~~~~~~~~~~a~~~~gir~~li~~~~r~--~~~e~~~~~~~~~~~~~~~-~vvg~~l~g-~~~~-~~~~~~~~~~~~A 108 (257)
.+++++++.+.+..+..+.++.+=+.+.+. .+.+++.+..+++..+... .++-+...+ ..+. .+.+.+.+..+.+
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 344556655444434444444443333332 2567788888877655321 011111111 1222 2346677778888
Q ss_pred HHcCCceeeec
Q 025169 109 REQGLQITLHC 119 (257)
Q Consensus 109 ~~~gl~v~~Ha 119 (257)
+++|+.+++=-
T Consensus 323 ~~~gi~v~ir~ 333 (356)
T PRK14455 323 KKNGVNCTIRR 333 (356)
T ss_pred HHCCCcEEEeC
Confidence 99999988754
Done!