BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025171
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 85 GSLNNLSSLNKQYG----LSKGSN-EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVL 139
G + N +L +YG GS+ E + + +++GP + L DL G F F L
Sbjct: 75 GEIYNHQALRAEYGDRYQFQTGSDCEVILAL-----YQEKGP----EFLDDLQGMFAFAL 125
Query: 140 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQ 199
YD + D + L+ G G + ++ ++ + C ++ FPAG S+
Sbjct: 126 YDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQD 184
Query: 200 G-LMSFEH 206
G + S+ H
Sbjct: 185 GEIRSYYH 192
>pdb|3R3C|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3C|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ A G+ + +A+ A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVAGGAYCALAEMLATEATVA---VVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
>pdb|3R34|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R34|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R35|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R35|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ G+ ++ +A+ A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALADMLATEATVA---VVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
>pdb|3R3D|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3D|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ G+ L + AS A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCA---LAEMLASEATVAVVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
>pdb|3R36|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R36|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R37|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R37|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAQMLATEATVA---VVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAG 145
P +V++ L G + F+L DC AG
Sbjct: 98 PRKLPEVIKSLKGKYDFILIDCPAG 122
>pdb|3R3A|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3A|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3B|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3B|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRARWGLVHGGAYCALAEMLATEATVA---VVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
>pdb|1Q4S|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4S|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4T|A Chain A, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4T|B Chain B, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4U|A Chain A, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
pdb|1Q4U|B Chain B, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 190
LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVA---VVHE 86
Query: 191 AGCMFHSEQGLMSFEHPTRE 210
G M + SF P +E
Sbjct: 87 KGMMAVGQSNHTSFFRPVKE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,675,433
Number of Sequences: 62578
Number of extensions: 297079
Number of successful extensions: 467
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 9
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)