Query 025171
Match_columns 257
No_of_seqs 204 out of 1656
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 9.8E-60 2.1E-64 408.9 24.6 224 2-230 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 1.5E-56 3.2E-61 383.3 21.2 227 2-230 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 6.6E-41 1.4E-45 328.5 18.0 203 29-240 19-227 (578)
4 PRK09431 asnB asparagine synth 100.0 8.6E-41 1.9E-45 326.8 17.0 203 29-240 19-229 (554)
5 PTZ00077 asparagine synthetase 100.0 1.3E-39 2.8E-44 320.0 18.7 203 30-240 20-239 (586)
6 COG0367 AsnB Asparagine syntha 100.0 2.8E-39 6.1E-44 315.3 13.5 202 28-240 17-232 (542)
7 cd00712 AsnB Glutamine amidotr 100.0 1.4E-35 3E-40 258.8 20.7 169 28-205 16-219 (220)
8 TIGR01536 asn_synth_AEB aspara 100.0 1.6E-35 3.5E-40 284.4 19.1 160 29-197 16-209 (467)
9 TIGR03104 trio_amidotrans aspa 100.0 1.5E-35 3.3E-40 292.1 18.0 171 29-208 18-226 (589)
10 TIGR03108 eps_aminotran_1 exos 100.0 2.6E-35 5.7E-40 292.3 14.0 172 29-208 19-227 (628)
11 KOG0571 Asparagine synthase (g 100.0 3.2E-35 6.9E-40 271.7 7.8 201 27-236 16-222 (543)
12 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.6E-33 3.6E-38 239.7 13.4 153 29-193 19-179 (181)
13 PRK08525 amidophosphoribosyltr 100.0 1.9E-31 4E-36 255.0 20.9 186 30-220 16-251 (445)
14 PRK07631 amidophosphoribosyltr 100.0 3.6E-31 7.8E-36 254.0 21.4 185 30-220 26-259 (475)
15 cd00714 GFAT Glutamine amidotr 100.0 1.4E-30 3E-35 227.1 18.9 162 29-196 14-214 (215)
16 PRK07272 amidophosphoribosyltr 100.0 3.1E-30 6.6E-35 248.0 22.1 188 30-220 26-261 (484)
17 PRK07349 amidophosphoribosyltr 100.0 3.5E-30 7.6E-35 248.3 21.7 187 32-220 51-288 (500)
18 PRK08341 amidophosphoribosyltr 100.0 7.9E-30 1.7E-34 243.1 23.4 187 29-220 17-247 (442)
19 PRK06388 amidophosphoribosyltr 100.0 2.6E-30 5.6E-35 248.1 20.2 189 29-220 33-267 (474)
20 PRK06781 amidophosphoribosyltr 100.0 5.7E-30 1.2E-34 245.8 21.6 185 30-220 26-259 (471)
21 cd01909 betaLS_CarA_N Glutamin 100.0 5.5E-30 1.2E-34 220.7 16.7 111 76-196 49-180 (199)
22 PRK09123 amidophosphoribosyltr 100.0 1.4E-29 2.9E-34 243.7 21.1 187 30-220 36-271 (479)
23 PRK07847 amidophosphoribosyltr 100.0 1.6E-29 3.5E-34 244.2 21.3 186 32-220 41-278 (510)
24 cd00715 GPATase_N Glutamine am 100.0 4.3E-29 9.3E-34 222.5 20.9 171 29-204 14-226 (252)
25 PLN02440 amidophosphoribosyltr 100.0 3.1E-29 6.8E-34 241.5 20.9 171 30-202 16-224 (479)
26 PRK05793 amidophosphoribosyltr 100.0 7.2E-29 1.6E-33 238.5 20.9 187 31-220 32-264 (469)
27 cd01907 GlxB Glutamine amidotr 100.0 6.3E-29 1.4E-33 221.3 18.4 163 28-196 16-248 (249)
28 TIGR01134 purF amidophosphorib 100.0 1.8E-28 3.8E-33 234.4 20.9 188 30-220 16-249 (442)
29 PF13537 GATase_7: Glutamine a 100.0 1.1E-29 2.3E-34 203.6 10.3 118 59-180 1-125 (125)
30 PRK09246 amidophosphoribosyltr 100.0 8.7E-29 1.9E-33 239.7 18.5 169 30-200 16-235 (501)
31 PRK00331 glucosamine--fructose 100.0 2.1E-28 4.6E-33 242.0 20.3 171 29-205 15-225 (604)
32 cd00352 Gn_AT_II Glutamine ami 100.0 1.9E-28 4E-33 211.3 15.8 161 32-195 21-220 (220)
33 TIGR01135 glmS glucosamine--fr 100.0 4.5E-28 9.8E-33 239.7 19.5 171 29-205 14-224 (607)
34 PTZ00295 glucosamine-fructose- 99.9 2E-26 4.4E-31 229.4 19.5 171 30-205 39-255 (640)
35 PF13522 GATase_6: Glutamine a 99.9 8.9E-26 1.9E-30 183.1 12.0 123 43-174 1-133 (133)
36 COG0034 PurF Glutamine phospho 99.9 3.2E-24 7E-29 201.0 18.3 189 30-220 21-259 (470)
37 PLN02981 glucosamine:fructose- 99.9 1.2E-22 2.7E-27 203.3 17.7 149 53-205 86-277 (680)
38 PTZ00394 glucosamine-fructose- 99.9 1.2E-21 2.6E-26 195.8 16.4 151 51-205 95-280 (670)
39 KOG0572 Glutamine phosphoribos 99.9 6E-21 1.3E-25 175.0 16.0 196 36-233 24-289 (474)
40 COG0449 GlmS Glucosamine 6-pho 99.8 1.3E-18 2.9E-23 169.4 12.8 143 53-202 66-219 (597)
41 cd00713 GltS Glutamine amidotr 99.7 2.6E-16 5.6E-21 148.6 16.8 136 53-197 201-392 (413)
42 cd01908 YafJ Glutamine amidotr 99.7 7.8E-16 1.7E-20 137.6 13.3 137 52-197 79-254 (257)
43 TIGR03442 conserved hypothetic 99.6 1.3E-14 2.9E-19 129.5 15.0 138 53-202 82-247 (251)
44 KOG0573 Asparagine synthase [A 99.6 3.1E-14 6.7E-19 133.5 12.6 148 30-192 19-171 (520)
45 PF00310 GATase_2: Glutamine a 99.5 1.7E-13 3.6E-18 128.2 13.6 117 51-175 193-361 (361)
46 PRK11750 gltB glutamate syntha 99.1 4.4E-10 9.5E-15 118.8 13.3 136 54-197 213-402 (1485)
47 KOG1268 Glucosamine 6-phosphat 99.0 3.6E-10 7.8E-15 108.1 6.7 129 30-163 58-202 (670)
48 PF13230 GATase_4: Glutamine a 98.5 4.4E-07 9.6E-12 82.0 9.9 140 54-200 72-251 (271)
49 COG0067 GltB Glutamate synthas 98.1 9.3E-06 2E-10 76.1 8.6 137 53-201 202-362 (371)
50 PF09147 DUF1933: Domain of un 98.0 7.9E-05 1.7E-09 62.9 11.0 98 69-178 41-142 (201)
51 COG0121 Predicted glutamine am 96.5 0.043 9.4E-07 49.2 11.6 57 52-109 69-132 (252)
52 KOG0399 Glutamate synthase [Am 90.4 2.1 4.5E-05 46.2 10.1 68 127-196 406-475 (2142)
53 PF04566 RNA_pol_Rpb2_4: RNA p 82.4 4.8 0.0001 28.4 5.5 47 104-161 12-60 (63)
54 COG0067 GltB Glutamate synthas 61.1 15 0.00033 34.8 5.0 49 126-176 322-370 (371)
55 PRK07225 DNA-directed RNA poly 29.6 1.8E+02 0.0038 29.7 7.0 61 80-163 6-68 (605)
56 TIGR03823 FliZ flagellar regul 29.1 36 0.00078 28.5 1.7 19 77-95 33-51 (168)
57 PRK11582 flagella biosynthesis 28.8 38 0.00081 28.4 1.8 19 77-95 33-51 (169)
58 PF08973 TM1506: Domain of unk 24.1 19 0.0004 29.4 -0.8 26 132-160 10-35 (134)
59 PF03508 Connexin43: Gap junct 22.8 30 0.00065 18.5 0.1 8 243-250 13-20 (20)
60 PF12594 DUF3764: Protein of u 21.2 53 0.0012 24.7 1.2 20 148-167 27-46 (86)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=9.8e-60 Score=408.91 Aligned_cols=224 Identities=59% Similarity=1.014 Sum_probs=204.2
Q ss_pred eeeeccCccCCCcccCCCCCCCCCCCCCCHHHHHHHHHhcCCCCccceEecCcEEEEEecCCCCCCCCCCeEecCCcEEE
Q 025171 2 LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYC 81 (257)
Q Consensus 2 lavf~k~va~~Pe~l~~~~~~~~~~~~~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~~~~~~~QP~~~~~~~~~l 81 (257)
||||+|+||+|||||++|+++.. +...+++++.+....|+ +.++.+++...|++++..+. ...|.+++.+++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~---~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~ 75 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP---AKTAEELLKRFLSANPS-AVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC 75 (224)
T ss_pred CcccccccCCCChHHcCCCcccc---CCCHHHHHHHHHhcCCC-cEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence 89999999999999999987432 44667899999999996 66688888888998765544 567888988899999
Q ss_pred EEEeEEeehhhHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEE
Q 025171 82 MFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFW 161 (257)
Q Consensus 82 v~nGeI~N~~eL~~~l~~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyy 161 (257)
++||+|||+.+|+++|+..++.+|+|+|+++|++++++|+|++++++++|+|+|||||||.+++++++|||++|++||||
T Consensus 76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYy 155 (224)
T cd01910 76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYW 155 (224)
T ss_pred EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEE
Confidence 99999999999999998778899999999999977778988888999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEEeCCceEEEecCCCccccCCCCCChhhhccceEEE
Q 025171 162 GIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKV 230 (257)
Q Consensus 162 g~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~~~~g~~~~~~~~~~~~~~~~~ds~~~~~~~~f~~ 230 (257)
+.+.+|.++||||+|+|...|.+.+.+|||||||.+++|+++|++|.|+++++||+||+|+|||++|||
T Consensus 156 g~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 156 GIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred EEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 987678999999999999999888999999999988777999999999999999999999999999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=1.5e-56 Score=383.27 Aligned_cols=227 Identities=65% Similarity=1.145 Sum_probs=215.3
Q ss_pred eeeeccCccCCCcccCCCCCCC-CCCCCCCHHHHHHHHHhcCCCCccceEecCcEEEEEecCCCCCCCCCCeEecCCcEE
Q 025171 2 LAIFNKGLVNPPQELHSPASLS-SSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVY 80 (257)
Q Consensus 2 lavf~k~va~~Pe~l~~~~~~~-~~~~~~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~~~~~~~QP~~~~~~~~~ 80 (257)
||||+|+||+|||||+||+++. ++.+++..+++++.+....| ++.++++++...|++++..++ ...|..|...++++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p-~a~s~~~g~~~~lAys~~~~~-~l~pR~F~~~DdIf 78 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANP-NAFSMNFGDSAALAYSHSNQS-SLHPRLFAGVDDIF 78 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCC-CeEEEEcCCCEEEEEecCCCC-ccccccccccCCEE
Confidence 8999999999999999999754 34568889999999999999 777899999999999988765 56778888888999
Q ss_pred EEEEeEEeehhhHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEE
Q 025171 81 CMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLF 160 (257)
Q Consensus 81 lv~nGeI~N~~eL~~~l~~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLy 160 (257)
|+|-|.|.|...|+++|++.++.|++.+|+++|++||++|+||+++++++|+|.|||||||..++++|+|||+.|..|||
T Consensus 79 CiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLy 158 (228)
T PF12481_consen 79 CIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLY 158 (228)
T ss_pred EEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEEeCCceEEEecCCCccccCCCCCChhhhccceEEE
Q 025171 161 WGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKV 230 (257)
Q Consensus 161 yg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~~~~g~~~~~~~~~~~~~~~~~ds~~~~~~~~f~~ 230 (257)
||.+.||.++|+++++.|...|++...+||+||+|.+++|+++|++|.++++++||+||+|+|||++|||
T Consensus 159 WGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 159 WGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcceeeeC
Confidence 9999889999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=6.6e-41 Score=328.55 Aligned_cols=203 Identities=20% Similarity=0.315 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC--CCCCCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--LSKGSN 104 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~--~~~s~~ 104 (257)
..+.+|+++|+|||||+++ ++..++++|||+||+ ++..+.||+++.++++++++||||||+.+||++|. .+++.+
T Consensus 19 ~~~~~m~~~l~hRGPD~~g-~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~s 97 (578)
T PLN02549 19 SRVLELSRRLRHRGPDWSG-LYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGS 97 (578)
T ss_pred HHHHHHHHHhcCcCCCccC-EEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCC
Confidence 3567999999999999998 788788999999998 66678999998888899999999999999999986 488999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCC
Q 025171 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK 184 (257)
Q Consensus 105 D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~ 184 (257)
|+|+|+++|+ ++|. +++++|+|+|||||||..++++++||||+|+|||||+.+.++.++||||+|+|...| +
T Consensus 98 D~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~-~ 169 (578)
T PLN02549 98 DCEVIAHLYE---EHGE----EFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDC-E 169 (578)
T ss_pred HHHHHHHHHH---HHHH----HHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHh-C
Confidence 9999999999 7886 899999999999999999999999999999999999987567899999999999887 4
Q ss_pred ceEEeCCCeEEEe-CCceEEEecCCCccccCCCCCChhhhccceEEEeeccccC-CCC
Q 025171 185 SFAPFPAGCMFHS-EQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMR-SMP 240 (257)
Q Consensus 185 ~i~~~ppG~~~~~-~~g~~~~~~~~~~~~~~~~~ds~~~~~~~~f~~~~~~~~~-~~~ 240 (257)
.|..|||||++.. .+++.+||++.|..+..+..+..-......|+-++..++. ++|
T Consensus 170 ~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvp 227 (578)
T PLN02549 170 RFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVP 227 (578)
T ss_pred CEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCc
Confidence 5999999999876 4458999998775433332211122345566666666665 555
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=8.6e-41 Score=326.79 Aligned_cols=203 Identities=20% Similarity=0.321 Sum_probs=167.7
Q ss_pred CCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC---CCCCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG---LSKGS 103 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~---~~~s~ 103 (257)
..+.+|+++|+|||||+++ ++..++++|||+||+ +...+.||+++.++.++|+|||||||+.+|+++|. .+.+.
T Consensus 19 ~~~~~m~~~l~hRGPD~~g-~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~ 97 (554)
T PRK09431 19 KKALEMSRLMRHRGPDWSG-IYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTG 97 (554)
T ss_pred HHHHHHHHHhhCCCCCcCC-EEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCC
Confidence 4678999999999999998 788888999999998 55578999988888999999999999999999985 37899
Q ss_pred CHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcC
Q 025171 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCA 183 (257)
Q Consensus 104 ~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~ 183 (257)
+|+|+|+++|+ +||. +++++|+|+|||||||..++++++||||+|+|||||+.+.++.++||||+|+|...|
T Consensus 98 sD~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~- 169 (554)
T PRK09431 98 SDCEVILALYQ---EKGP----DFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVC- 169 (554)
T ss_pred CHHHHHHHHHH---HHHH----HHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhc-
Confidence 99999999999 7896 899999999999999999999999999999999999987548899999999999887
Q ss_pred CceEEeCCCeEEEeCCc-eEEEecCCCccc-cCCCCCChhhhccceEEEeeccccC-CCC
Q 025171 184 KSFAPFPAGCMFHSEQG-LMSFEHPTREMK-AMPRIDSEGVMCGANFKVDVQSRMR-SMP 240 (257)
Q Consensus 184 ~~i~~~ppG~~~~~~~g-~~~~~~~~~~~~-~~~~~ds~~~~~~~~f~~~~~~~~~-~~~ 240 (257)
+.|..|||||++...+| +.+||++.|... ..+..+..-+-....|+-++..++. ++|
T Consensus 170 ~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvp 229 (554)
T PRK09431 170 KTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVP 229 (554)
T ss_pred CCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45999999999876555 889998776321 1111111112234555556666655 445
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=320.03 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=163.8
Q ss_pred CHHHHHHHHHhcCCCCccceEec-----CcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----
Q 025171 30 HPEEIFNEFLISQSSNAFSINFG-----NAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG---- 98 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~~-----~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~---- 98 (257)
.+.+|+++|+|||||+++ ++.. +.++|||+||+ +...+.||+.+.+++++++|||||||+.+||++|.
T Consensus 20 ~~~~m~~~l~HRGPD~~g-~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~ 98 (586)
T PTZ00077 20 KALELSKRLRHRGPDWSG-IIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGY 98 (586)
T ss_pred HHHHHHHHHhCCCCCcCC-EEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCC
Confidence 467899999999999999 6653 57899999998 55578999998888999999999999999999984
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhh
Q 025171 99 LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELI 178 (257)
Q Consensus 99 ~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL 178 (257)
.+++.+|+|+|+++|+ +||. .+++++|+|+|||+|||..++++++||||+|+|||||+...++.++||||+|+|
T Consensus 99 ~f~t~sD~Evil~ly~---~~G~---~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL 172 (586)
T PTZ00077 99 KFSSNSDCEIIGHLYK---EYGP---KDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKAL 172 (586)
T ss_pred cCCCCCHHHHHHHHHH---HhCH---HHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHH
Confidence 3789999999999999 7884 379999999999999999999999999999999999998556789999999999
Q ss_pred HhhcCCceEEeCCCeEEEeCC---ceEEEecCCCcccc--CCCCCChhhhccceEEEeeccccC-CCC
Q 025171 179 KASCAKSFAPFPAGCMFHSEQ---GLMSFEHPTREMKA--MPRIDSEGVMCGANFKVDVQSRMR-SMP 240 (257)
Q Consensus 179 ~~~~~~~i~~~ppG~~~~~~~---g~~~~~~~~~~~~~--~~~~ds~~~~~~~~f~~~~~~~~~-~~~ 240 (257)
...| +.|..|||||++.... .+++||+|.|.... .+..+..-+-....|+-++..++. ++|
T Consensus 173 ~~~~-~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvp 239 (586)
T PTZ00077 173 HDQC-VEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVP 239 (586)
T ss_pred HHhc-CCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9887 4599999999986532 37899988764221 121111111234455556666555 444
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=315.31 Aligned_cols=202 Identities=14% Similarity=0.209 Sum_probs=168.2
Q ss_pred CCCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCC
Q 025171 28 PKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSK 101 (257)
Q Consensus 28 ~~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~ 101 (257)
...+.+|.+.|+|||||.++ ++...++.+||+||+ +...+.||+...+++++++|||||||+.+||++|. .|.
T Consensus 17 ~~~~~~m~~~l~hRGPD~~g-~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~ 95 (542)
T COG0367 17 KSIIEEMTKLLRHRGPDDSG-VWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFR 95 (542)
T ss_pred hHHHHHHHHHhhccCCCccc-cEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceec
Confidence 45689999999999999999 888999999999999 66568999988777799999999999999999996 389
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhh
Q 025171 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (257)
Q Consensus 102 s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~ 181 (257)
+.+|+|+|+++|+ .||. +|+++|+|+|||+|||..+++||++|||+|+|||||+.. ++.++||||.|+|...
T Consensus 96 t~sDtEvil~~y~---~~g~----~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~ 167 (542)
T COG0367 96 TYSDTEVILTLYE---EWGE----DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAH 167 (542)
T ss_pred cccchHHHHHHHH---HHHH----HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhC
Confidence 9999999999999 7986 899999999999999999999999999999999999998 4679999999999987
Q ss_pred -----cCCceEEeCCCeEEEe-CCc-eEEEecCCCccccCCCCCChhhhccceEEEeeccccC-CCC
Q 025171 182 -----CAKSFAPFPAGCMFHS-EQG-LMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMR-SMP 240 (257)
Q Consensus 182 -----~~~~i~~~ppG~~~~~-~~g-~~~~~~~~~~~~~~~~~ds~~~~~~~~f~~~~~~~~~-~~~ 240 (257)
+ +.|+++||||++.. .++ ..+||++.+........+..+ -....+..++..+++ ++|
T Consensus 168 ~~~~~~-~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~l~~~l~~sV~~r~~advp 232 (542)
T COG0367 168 PVVRFL-RDIKELPPGHLLEFTDGGLIRRYWRLSEKTSKESADELAE-HLRSLLEDAVKRRLVADVP 232 (542)
T ss_pred Cccccc-CCeEEcCCCcEEEEcCCCceeeeecccccccccchHHHHH-HHHHHHHHHHHHHhccCCc
Confidence 6 45999999999876 455 888988777655411112222 234444555555553 444
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.4e-35 Score=258.81 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=146.7
Q ss_pred CCCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCC
Q 025171 28 PKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSK 101 (257)
Q Consensus 28 ~~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~ 101 (257)
...+..|+.+|+|||||.++ ++..++++|||+|++ +...+.||+...++++++++||+|||+.+|+++|. .+.
T Consensus 16 ~~~~~~~~~~l~hRGpd~~~-~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~ 94 (220)
T cd00712 16 RATLERMLDALAHRGPDGSG-IWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFR 94 (220)
T ss_pred HHHHHHHHHHHhccCCCCCC-EEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCC
Confidence 35678999999999999888 788889999999998 33368999988888899999999999999999985 267
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhh
Q 025171 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (257)
Q Consensus 102 s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~ 181 (257)
+.+|+|+|+++|+ ++|. +++++|+|+|||++||..+++++++||++|+|||||+.. ++.++||||+++|...
T Consensus 95 ~~sD~e~l~~~~~---~~g~----~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~ 166 (220)
T cd00712 95 THSDTEVILHLYE---EWGE----DCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLAL 166 (220)
T ss_pred CCChHHHHHHHHH---HHhH----HHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhc
Confidence 8999999999999 7885 999999999999999998899999999999999999997 5789999999999753
Q ss_pred cC--------------------------CceEEeCCCeEEEe-CCc--eEEEe
Q 025171 182 CA--------------------------KSFAPFPAGCMFHS-EQG--LMSFE 205 (257)
Q Consensus 182 ~~--------------------------~~i~~~ppG~~~~~-~~g--~~~~~ 205 (257)
+. +.|+.+||||++.. .++ .++||
T Consensus 167 ~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw 219 (220)
T cd00712 167 PGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYW 219 (220)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeC
Confidence 22 46999999999754 433 45565
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.6e-35 Score=284.40 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHhcCCCCccceE-ecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSIN-FGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSK 101 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~-~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~ 101 (257)
..+..|+++|+|||||+++ ++ ..++++|||+||+ +...+.||+.+.+++++++|||+|||+.+|+++|. .+.
T Consensus 16 ~~~~~m~~~l~hRGPD~~g-~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 16 EAILRMSDTIAHRGPDASG-IEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHhhCcCCCcCC-cEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 3688999999999999998 77 8889999999999 44456899998888999999999999999999985 378
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhh
Q 025171 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (257)
Q Consensus 102 s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~ 181 (257)
+.+|+|+++++|+ +||. +++++|+|+|||+|||..+++++++||++|+|||||+.. ++.++||||+++|...
T Consensus 95 ~~~D~e~il~~y~---~~g~----~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~ 166 (467)
T TIGR01536 95 TDSDTEVILHLYE---EWGE----ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAH 166 (467)
T ss_pred CCCHHHHHHHHHH---HHHH----HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhc
Confidence 8999999999999 7885 899999999999999999999999999999999999987 5889999999998653
Q ss_pred c---------------------------CCceEEeCCCeEEEe
Q 025171 182 C---------------------------AKSFAPFPAGCMFHS 197 (257)
Q Consensus 182 ~---------------------------~~~i~~~ppG~~~~~ 197 (257)
+ .+.|+.+||||++..
T Consensus 167 ~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~ 209 (467)
T TIGR01536 167 PRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPL 209 (467)
T ss_pred cccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEE
Confidence 3 246889999999754
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.5e-35 Score=292.08 Aligned_cols=171 Identities=14% Similarity=0.203 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CC-CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSK 101 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~-~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~ 101 (257)
..+..|+++|+|||||+++ ++..++++|||+||+ +. ..+.||+.++++++++||||||||+.+|+++|. .+.
T Consensus 18 ~~~~~m~~~l~hRGPD~~g-~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~ 96 (589)
T TIGR03104 18 AAVVRMLAVLAPRGPDAGG-VHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFF 96 (589)
T ss_pred HHHHHHHHhhcCCCCCcCC-cEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCccc
Confidence 4678999999999999999 888899999999998 43 368999998888899999999999999999984 378
Q ss_pred CCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhh
Q 025171 102 GSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS 181 (257)
Q Consensus 102 s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~ 181 (257)
+.+|+|+|+++|+ +||. +++++|+|+|||+|||..++++++||||+|+|||||... ++.++||||+++|+..
T Consensus 97 ~~sD~Evil~~y~---~~G~----~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~ 168 (589)
T TIGR03104 97 SDGDTEVILKAYH---AWGR----DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAA 168 (589)
T ss_pred CCCHHHHHHHHHH---HHHH----HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhC
Confidence 9999999999999 7995 999999999999999999999999999999999999987 5789999999998642
Q ss_pred ---------------------------cCCceEEeCCCeEEEe-CCc---eEEEecCC
Q 025171 182 ---------------------------CAKSFAPFPAGCMFHS-EQG---LMSFEHPT 208 (257)
Q Consensus 182 ---------------------------~~~~i~~~ppG~~~~~-~~g---~~~~~~~~ 208 (257)
+.+.|..+||||++.. .+| ..+||.+.
T Consensus 169 ~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~ 226 (589)
T TIGR03104 169 GGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLD 226 (589)
T ss_pred CCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCC
Confidence 1146889999999754 333 45788764
No 10
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=2.6e-35 Score=292.30 Aligned_cols=172 Identities=16% Similarity=0.227 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKG 102 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s 102 (257)
..+.+|+++|+|||||+++ ++..++++|||+|++ +...+.||+++.+++++++|||+|||+.||+++|. .+.+
T Consensus 19 ~~~~~m~~~l~hRGpD~~g-~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~ 97 (628)
T TIGR03108 19 DLLRRMNDAQAHRGPDGGG-VHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRT 97 (628)
T ss_pred HHHHHHHHHhcCCCCCccC-eEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCC
Confidence 4578999999999999998 888889999999998 44468999998888999999999999999999884 3788
Q ss_pred CCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhh-
Q 025171 103 SNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS- 181 (257)
Q Consensus 103 ~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~- 181 (257)
.+|+|+++++|+ +||. +++++|+|+|||++||..+++++++||++|+|||||+...++.++||||+++|...
T Consensus 98 ~sD~Evi~~~~~---~~g~----~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~ 170 (628)
T TIGR03108 98 RSDTEVIVHAWE---EWGE----ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHP 170 (628)
T ss_pred CChHHHHHHHHH---HHHH----HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence 999999999999 7885 89999999999999999999999999999999999997545789999999988642
Q ss_pred -------------------------cCCceEEeCCCeEEEe-CCc----eEEEecCC
Q 025171 182 -------------------------CAKSFAPFPAGCMFHS-EQG----LMSFEHPT 208 (257)
Q Consensus 182 -------------------------~~~~i~~~ppG~~~~~-~~g----~~~~~~~~ 208 (257)
+.+.|+.+||||++.. .++ ..+||.+.
T Consensus 171 ~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~ 227 (628)
T TIGR03108 171 SLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVS 227 (628)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCC
Confidence 2246899999999754 222 34566654
No 11
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-35 Score=271.74 Aligned_cols=201 Identities=21% Similarity=0.302 Sum_probs=167.4
Q ss_pred CCCCHHHHHHHHHhcCCCCccceEecCcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC--CCCC
Q 025171 27 KPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--LSKG 102 (257)
Q Consensus 27 ~~~~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~--~~~s 102 (257)
+.....++...++|||||-++ ........|+|.||+ ++..+.||++..+..+++..||||||+.+||+.+. .+++
T Consensus 16 ~~~~~l~ls~~~~hRgpd~sg-~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T 94 (543)
T KOG0571|consen 16 KKPKALELSRRIRHRGPDWSG-LAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQT 94 (543)
T ss_pred cChhhhhHHHhhcCCCCCcch-hheeccccccccceeEecCCcCCcccccCCCcEEEEECceeccHHHHHHHhhhccccc
Confidence 445567888999999999888 444445589999999 78789999999988899999999999999999886 3788
Q ss_pred CCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhc
Q 025171 103 SNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC 182 (257)
Q Consensus 103 ~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~ 182 (257)
.+|+|+|+++|+ +.|. .++...|+|+|||+++|...+++++|||++|++|||||++.+++++||||.|+|...|
T Consensus 95 ~sDcEvIi~lY~---khg~---~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C 168 (543)
T KOG0571|consen 95 GSDCEVIIHLYE---KHGG---EQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDC 168 (543)
T ss_pred CCCceeeeehHh---hcCc---hhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhh
Confidence 999999999999 6754 5899999999999999999999999999999999999998889999999999999999
Q ss_pred CCceEEeCCCeEEEeC-CceEEEecCCCccccCCCCCChh-hhccceEEEeecccc
Q 025171 183 AKSFAPFPAGCMFHSE-QGLMSFEHPTREMKAMPRIDSEG-VMCGANFKVDVQSRM 236 (257)
Q Consensus 183 ~~~i~~~ppG~~~~~~-~g~~~~~~~~~~~~~~~~~ds~~-~~~~~~f~~~~~~~~ 236 (257)
.+ |..|||||+|.++ +++.+|++|.|-.+.+|- ++.. ...+.+|+-+|.-+|
T Consensus 169 ~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s-~p~d~~~~r~~~~~aV~KRL 222 (543)
T KOG0571|consen 169 EK-IESFPPGHYYTSKTGKLTRYFNPEWFDENIPS-TPLDYLALRHTLEKAVRKRL 222 (543)
T ss_pred hc-eeecCCcceeecccccccCCCCchhhhccCCC-CcccHHHHHHHHHHHHHHHh
Confidence 65 8999999999874 569999999887665542 2222 123444444444444
No 12
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=1.6e-33 Score=239.73 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHhcCCCCccceEec---CcEEEEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhCCCCCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFG---NAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGS 103 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~---~~~~lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~~~s~ 103 (257)
...++|+++|+|||||.++..... +.+.++|+||+ +...+.||+...+++++++|||+|||+.+|++ +.
T Consensus 19 ~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~ 92 (181)
T cd03766 19 LLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNGELYNIDGVED------EE 92 (181)
T ss_pred hhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECCEEECcccccC------CC
Confidence 467899999999999988743332 45899999998 44468999988777899999999999999974 78
Q ss_pred CHHHHHHHHHHHHHhcCC--chHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeC-CCeEEEEecchhhHh
Q 025171 104 NEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA-DGSVVISDNLELIKA 180 (257)
Q Consensus 104 ~D~evll~~y~~~~~~G~--~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~-~g~l~fASe~~aL~~ 180 (257)
+|+|+|+++|+ ++|. ..+.+++++|+|+||||+||..++++|++|||+|+|||||+..+ ++.++|||+.....
T Consensus 93 sDtEvi~~l~~---~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~- 168 (181)
T cd03766 93 NDTEVIFELLA---NCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS- 168 (181)
T ss_pred CHHHHHHHHHH---HHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC-
Confidence 99999999998 5552 12248999999999999999989999999999999999999874 57899999976431
Q ss_pred hcCCceEEeCCCe
Q 025171 181 SCAKSFAPFPAGC 193 (257)
Q Consensus 181 ~~~~~i~~~ppG~ 193 (257)
. ..+.++||+-
T Consensus 169 -~-~~~~e~~~~g 179 (181)
T cd03766 169 -G-SGFQEVLAGG 179 (181)
T ss_pred -C-CceEECCCCc
Confidence 1 2478888843
No 13
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=1.9e-31 Score=254.98 Aligned_cols=186 Identities=15% Similarity=0.089 Sum_probs=145.6
Q ss_pred CHHHHHHHHHhcCCCCccceEe--------------------------cCcEEEEEecCC--CC--CCCCCCeEe--cCC
Q 025171 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPE--NP--NSVSQRWFC--GLH 77 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~--------------------------~~~~~lg~~rl~--~~--~~~~QP~~~--~~~ 77 (257)
.+-.|+.+|.|||||++|.... .++++|||+||+ +. ..+.||+.+ .++
T Consensus 16 ~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g 95 (445)
T PRK08525 16 LAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLG 95 (445)
T ss_pred HHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEeecCCC
Confidence 3457899999999999883221 246899999998 32 267999986 567
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC----chHHHhhcccccceEEEEEEcCCCEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP----YPAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~----~~~~~~l~~L~G~FAfvi~D~~~~~l~~ 149 (257)
+++++|||+|||+.+||++|. .|.+.+|+|+++++|.. ++. ..+.+++++|+|+|||++++. +++++
T Consensus 96 ~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~---~~~~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~ 170 (445)
T PRK08525 96 EIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIAR---SKKESLKDRIIEALKKIIGAYCLVLLSR--SKMFA 170 (445)
T ss_pred CEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHhcCCceEEEEEeC--CEEEE
Confidence 899999999999999999984 38899999999999973 331 123578999999999999984 78999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-e--CCceEEEec--C-----CCccccCCCCCC
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-S--EQGLMSFEH--P-----TREMKAMPRIDS 219 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~--~~g~~~~~~--~-----~~~~~~~~~~ds 219 (257)
+||++|+|||||+...++.++||||.++|.....+.+++++||++++ + ++|++.+.. . .++.-.+.|+||
T Consensus 171 ~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~~~~c~fe~iY~~rpds 250 (445)
T PRK08525 171 IRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPTPRICAFEYIYFARPDS 250 (445)
T ss_pred EECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCCCccceeEeeeecCCCc
Confidence 99999999999998645689999999999766556688999999965 4 346655331 1 122224678887
Q ss_pred h
Q 025171 220 E 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 251 ~ 251 (445)
T PRK08525 251 I 251 (445)
T ss_pred e
Confidence 4
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=3.6e-31 Score=253.97 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=147.7
Q ss_pred CHHHHHHHHHhcCCCCccceEe--------------------------cCcEEEEEecCCCC----CCCCCCeE--ecCC
Q 025171 30 HPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPENP----NSVSQRWF--CGLH 77 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~--------------------------~~~~~lg~~rl~~~----~~~~QP~~--~~~~ 77 (257)
..-.++.+|.|||||+++.... .|+++|||+||++. ..+.||++ ..++
T Consensus 26 ~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g 105 (475)
T PRK07631 26 ITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTG 105 (475)
T ss_pred HHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCC
Confidence 3457789999999999884321 36789999999822 25799995 3457
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc----hHHHhhcccccceEEEEEEcCCCEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY----PAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~----~~~~~l~~L~G~FAfvi~D~~~~~l~~ 149 (257)
+++++|||+|+|+.+||++|. .|.+.+|+|+++++|. +++.. .+.+++++|+|+|||+++|. +++++
T Consensus 106 ~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~---~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~a 180 (475)
T PRK07631 106 SLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIK---RSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYV 180 (475)
T ss_pred CEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEE
Confidence 799999999999999999984 3889999999999998 44421 23578999999999999994 67999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEec-CCCcc-------ccCCCCCCh
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-PTREM-------KAMPRIDSE 220 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~-~~~~~-------~~~~~~ds~ 220 (257)
+|||+|+||||||.. ++.++||||.++|...+.+.+++++||++++ +++|+..+.. +..+. -.+.|+||.
T Consensus 181 aRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~iYfarpdS~ 259 (475)
T PRK07631 181 ALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNRSICSMEYIYFARPDSN 259 (475)
T ss_pred EECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCcccceEEEEEeecCCcc
Confidence 999999999999997 5689999999999887777789999999965 4677766543 21111 146888985
No 15
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.97 E-value=1.4e-30 Score=227.08 Aligned_cols=162 Identities=13% Similarity=0.139 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHhcCCCCccceEec---------------------------CcEEEEEecCC--CC--CCCCCCeEecCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINFG---------------------------NAAALAYVPPE--NP--NSVSQRWFCGLH 77 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~~---------------------------~~~~lg~~rl~--~~--~~~~QP~~~~~~ 77 (257)
..+..|+.+++|||||+.+ ++.. +.++|||+|++ +. ..+.||+...++
T Consensus 14 ~~~~~~l~~l~hRG~d~~G-i~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~ 92 (215)
T cd00714 14 DILLEGLKRLEYRGYDSAG-IAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDG 92 (215)
T ss_pred HHHHHHHHHHhccCcCcce-EEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCCcCCC
Confidence 3567899999999999988 4432 56899999998 32 357999987667
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEEcCCC-EEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKAG-TIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~---~~~~~l~~L~G~FAfvi~D~~~~-~l~~ 149 (257)
+++++|||+|||+.+|+++|. .+.+.+|+|+++++|..+.+.+.. .+.+++++|+|+|||+++|+.++ +|++
T Consensus 93 ~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~ 172 (215)
T cd00714 93 EIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVA 172 (215)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEEE
Confidence 899999999999999999984 378999999999999853333321 12479999999999999998764 9999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH 196 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~ 196 (257)
+|| .|||||+.. ++.++||||.++|...|.+ +..+.+|.++.
T Consensus 173 ~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~~~~~~~~ 214 (215)
T cd00714 173 ARN---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYLEDGDIAV 214 (215)
T ss_pred EEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCCEEe
Confidence 999 499999987 5789999999999998854 88999998863
No 16
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.1e-30 Score=248.05 Aligned_cols=188 Identities=17% Similarity=0.141 Sum_probs=147.4
Q ss_pred CHHHHHHHHHhcCCCCccceEe---------------------------cCcEEEEEecCC--CC--CCCCCCeEe--cC
Q 025171 30 HPEEIFNEFLISQSSNAFSINF---------------------------GNAAALAYVPPE--NP--NSVSQRWFC--GL 76 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~---------------------------~~~~~lg~~rl~--~~--~~~~QP~~~--~~ 76 (257)
..-.++.+|.|||+|++|.... .|+++|||+||+ +. ..+.||+.. .+
T Consensus 26 ~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~ 105 (484)
T PRK07272 26 LTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHD 105 (484)
T ss_pred HHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEeecCC
Confidence 3567799999999999884332 246899999998 22 258999976 45
Q ss_pred CcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC--chHHHhhcccccceEEEEEEcCCCEEEEE
Q 025171 77 HNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~--~~~~~~l~~L~G~FAfvi~D~~~~~l~~a 150 (257)
+.++++|||+|+|+.+||++|. .|.+.+|+|+|+++|..... +. ..+.+++++|+|+|||++++. ++|+++
T Consensus 106 g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a~ 182 (484)
T PRK07272 106 MQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLIAA 182 (484)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEEEE
Confidence 7899999999999999999984 38899999999999973211 11 123578999999999999984 789999
Q ss_pred EcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEe--cCCC---cc---ccCCCCCCh
Q 025171 151 LDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE--HPTR---EM---KAMPRIDSE 220 (257)
Q Consensus 151 RD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~--~~~~---~~---~~~~~~ds~ 220 (257)
|||+|+||||||...++.++||||.++|...+.+.+++++||+++. +++|+..+. .+.. +. -.+.|+||.
T Consensus 183 RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~~~~~~~~~~~~C~FE~vYfarpds~ 261 (484)
T PRK07272 183 LDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQYDSYTTDTQLAICSMEYIYFARPDST 261 (484)
T ss_pred ECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEEEEecCCccccccchhhhhhcCCccc
Confidence 9999999999998645679999999999887767789999999975 467766542 2211 11 146888886
No 17
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.5e-30 Score=248.34 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCCCCccceEe--------------------------cCcEEEEEecCC--CC--CCCCCCeEec--CCcE
Q 025171 32 EEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPE--NP--NSVSQRWFCG--LHNV 79 (257)
Q Consensus 32 ~~m~~~~~~RGPd~~~~~~~--------------------------~~~~~lg~~rl~--~~--~~~~QP~~~~--~~~~ 79 (257)
-.++.+|.|||+|++|.... .|+++|||+||+ +. ..+.||+... .+++
T Consensus 51 ~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~i 130 (500)
T PRK07349 51 YFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPL 130 (500)
T ss_pred HHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCE
Confidence 46788999999999883221 346799999999 22 3579999764 4779
Q ss_pred EEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEEcCCCEEEEEEc
Q 025171 80 YCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (257)
Q Consensus 80 ~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~---~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD 152 (257)
+++|||+|+|+.+||++|. .|.+.+|+|+|+++|......|.. .+.+++++|+|+|||++.+ .++|+++||
T Consensus 131 alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~--~~~l~aaRD 208 (500)
T PRK07349 131 ALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGT--PEGLMGVRD 208 (500)
T ss_pred EEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEe--CCEEEEEEC
Confidence 9999999999999999984 388999999999999753333321 2357899999999999987 478999999
Q ss_pred CCCCeEEEEEEeC---CCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEec-CC-------CccccCCCCCCh
Q 025171 153 ADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-PT-------REMKAMPRIDSE 220 (257)
Q Consensus 153 ~~G~rPLyyg~~~---~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~-~~-------~~~~~~~~~ds~ 220 (257)
++|+||||||... ++.++||||.++|.....+.+++++||++++ +++|+..+.. +. ++.-.+.|+||.
T Consensus 209 p~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~vYfarpdS~ 288 (500)
T PRK07349 209 PNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWAQEPQRKLCIFEMIYFARPDSR 288 (500)
T ss_pred CCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecccCCCcceeEEEeeeccCCCCc
Confidence 9999999999752 3579999999999877667799999999975 4677666542 11 111246788885
No 18
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=7.9e-30 Score=243.11 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHhcCCCCccceE-------------------------ecCcEEEEEecCC--CCCCCCCCeEec--CCcE
Q 025171 29 KHPEEIFNEFLISQSSNAFSIN-------------------------FGNAAALAYVPPE--NPNSVSQRWFCG--LHNV 79 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~-------------------------~~~~~~lg~~rl~--~~~~~~QP~~~~--~~~~ 79 (257)
..+-.++.+|.|||+|++|... +.|+++|||+||+ +...+.||+... ++.+
T Consensus 17 ~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~~~~~QP~~~~~~~g~i 96 (442)
T PRK08341 17 KKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGYKI 96 (442)
T ss_pred HHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCCCcCcCCEEeecCCCCE
Confidence 3567889999999999988322 1367899999999 434789998654 4679
Q ss_pred EEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHH-HHhcCC--chHHHhhcccccceEEEEEEcCCCEEEEEEc
Q 025171 80 YCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRT-LRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (257)
Q Consensus 80 ~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~-~~~~G~--~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD 152 (257)
+++|||+|+|+.+||++|. .|.+.+|+|+|++++.. +.++|. ..+.+++++|+|+|||++.+. ++|+++||
T Consensus 97 alvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD 174 (442)
T PRK08341 97 AIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVARD 174 (442)
T ss_pred EEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEEEc
Confidence 9999999999999999984 48899999999887643 224443 123568899999999999984 78999999
Q ss_pred CCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEecCCC-------ccccCCCCCCh
Q 025171 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEHPTR-------EMKAMPRIDSE 220 (257)
Q Consensus 153 ~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~~~~-------~~~~~~~~ds~ 220 (257)
++|+||||||.. +.++||||.++|...+. .+++++||+++. +++|++++..... +.-.+.|+||.
T Consensus 175 ~~GirPL~~G~~--~~~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~~~~~~~~~~~~~C~fe~iYfarpds~ 247 (442)
T PRK08341 175 PVGFRPLSYGEG--DGHYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEVESKVLAREKHHHCVFEYIYFARPDSV 247 (442)
T ss_pred CCCceEEEEEEC--CEEEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCceEEEeeccCCCccceEEEEEecCCccc
Confidence 999999999984 45899999999988774 699999999975 4677765432211 11246777875
No 19
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.6e-30 Score=248.13 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=148.6
Q ss_pred CCHHHHHHHHHhcCCCCccceEe-------------------------cCcEEEEEecCC--CC--CCCCCCeEe--cCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINF-------------------------GNAAALAYVPPE--NP--NSVSQRWFC--GLH 77 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~-------------------------~~~~~lg~~rl~--~~--~~~~QP~~~--~~~ 77 (257)
..+-.++.+|.|||+|++|.... .|+++|||+||+ +. ..+.||+.. ..+
T Consensus 33 ~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g 112 (474)
T PRK06388 33 SPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLG 112 (474)
T ss_pred HHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCC
Confidence 34678899999999999884332 345799999998 32 267999863 356
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHH-hcCC-chHHHhhcccccceEEEEEEcCCCEEEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLR-DRGP-YPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~-~~G~-~~~~~~l~~L~G~FAfvi~D~~~~~l~~aR 151 (257)
.++++|||+|+|+.+||++|. .|.+.+|+|+++++|.... +++. ..+.+++++|+|+|||++++ +++|+++|
T Consensus 113 ~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~--~~~l~a~R 190 (474)
T PRK06388 113 YIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMI--NDRLYAIR 190 (474)
T ss_pred CEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEE--CCEEEEEE
Confidence 799999999999999999984 3899999999999995422 3442 12357999999999999997 47899999
Q ss_pred cCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEec-CCCc-------cccCCCCCCh
Q 025171 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-PTRE-------MKAMPRIDSE 220 (257)
Q Consensus 152 D~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~-~~~~-------~~~~~~~ds~ 220 (257)
|++|+||||||.. ++.++||||.++|.....+.+++++||+++. +++|+.++.. +..+ .-.+.|+||.
T Consensus 191 Dp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~iYfarpds~ 267 (474)
T PRK06388 191 DPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKVAHCMFEYVYFSRPDSI 267 (474)
T ss_pred CCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCccccceEEEEeecCCccc
Confidence 9999999999997 5679999999999987777799999999964 5677755433 1111 1146888993
No 20
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=5.7e-30 Score=245.78 Aligned_cols=185 Identities=14% Similarity=0.155 Sum_probs=146.4
Q ss_pred CHHHHHHHHHhcCCCCccceE--------------------------ecCcEEEEEecCC--CC--CCCCCCeEe--cCC
Q 025171 30 HPEEIFNEFLISQSSNAFSIN--------------------------FGNAAALAYVPPE--NP--NSVSQRWFC--GLH 77 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~--------------------------~~~~~~lg~~rl~--~~--~~~~QP~~~--~~~ 77 (257)
..-.++.+|.|||+|+++... +.|+++|||+|++ +. ..+.||+.. .++
T Consensus 26 ~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g 105 (471)
T PRK06781 26 VSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDH 105 (471)
T ss_pred HHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCC
Confidence 345789999999999988432 1356789999998 22 267899964 356
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC----chHHHhhcccccceEEEEEEcCCCEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP----YPAHQVLRDLDGSFGFVLYDCKAGTIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~----~~~~~~l~~L~G~FAfvi~D~~~~~l~~ 149 (257)
.++++|||+|+|+++||++|. .|.+.+|+|+|+++|.. ++. ..+.+++++|+|+|||++++. +++++
T Consensus 106 ~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~---~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 180 (471)
T PRK06781 106 SMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKR---STKDSLIESVKEALNKVKGAFAYLLLTG--NEMIV 180 (471)
T ss_pred CEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence 899999999999999999984 38899999999999973 321 123578999999999999994 78999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEecCCC-c-------cccCCCCCCh
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEHPTR-E-------MKAMPRIDSE 220 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~~~~-~-------~~~~~~~ds~ 220 (257)
+||++|+|||||+.. ++.++||||.++|.....+.+++++||+++. +++|+..+..+.. + .-.+.|+||.
T Consensus 181 aRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~~~C~fE~vYfarpds~ 259 (471)
T PRK06781 181 ALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDHAICSMEYIYFARPDSN 259 (471)
T ss_pred EECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCcccccceEEEEEecCCCce
Confidence 999999999999997 5689999999999876666789999999975 4677765432211 1 1246888994
No 21
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=5.5e-30 Score=220.72 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=99.5
Q ss_pred CCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEE
Q 025171 76 LHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (257)
Q Consensus 76 ~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aR 151 (257)
.+++++++||||||+.+|+++|. .+.+.+|+|+|+++|+ +||. +++++|+|+|||+|||++ ++|++||
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~---~~G~----~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLT---RLGL----HAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHH---HHhH----HHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 35799999999999999999984 2688999999999999 8996 999999999999999998 9999999
Q ss_pred cCCCCeEEEEEEeCCCeEEEEecchhhHhh-----------------cCCceEEeCCCeEEE
Q 025171 152 DADEGVRLFWGIAADGSVVISDNLELIKAS-----------------CAKSFAPFPAGCMFH 196 (257)
Q Consensus 152 D~~G~rPLyyg~~~~g~l~fASe~~aL~~~-----------------~~~~i~~~ppG~~~~ 196 (257)
||+|+|||||... +.++||||+|+|... ..+.|+.+||||++.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~ 180 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNV 180 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEE
Confidence 9999999999875 689999999999753 124689999999974
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=243.74 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=145.3
Q ss_pred CHHHHHHHHHhcCCCCccceEe---------------------------cCcEEEEEecCC--CC--CCCCCCeEec--C
Q 025171 30 HPEEIFNEFLISQSSNAFSINF---------------------------GNAAALAYVPPE--NP--NSVSQRWFCG--L 76 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~---------------------------~~~~~lg~~rl~--~~--~~~~QP~~~~--~ 76 (257)
..-.++.+|.|||+|+++.... .|+++|||+||+ +. ..+.||+... +
T Consensus 36 ~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~ 115 (479)
T PRK09123 36 LTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAELEF 115 (479)
T ss_pred HHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceeecCC
Confidence 4566789999999999884321 245799999998 32 3689999763 5
Q ss_pred CcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC--chHHHhhcccccceEEEEEEcCCCEEEEE
Q 025171 77 HNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~--~~~~~~l~~L~G~FAfvi~D~~~~~l~~a 150 (257)
++++++|||+|+|+.+||++|. .+.+.+|+|+|+++|....+ +. ..+.+++++|+|+|||++++. ++|+++
T Consensus 116 g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l~a~ 192 (479)
T PRK09123 116 GGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKLIGA 192 (479)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEEEEE
Confidence 7899999999999999999984 37899999999999973211 11 112578999999999999985 689999
Q ss_pred EcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCc-eEEEecCC--------CccccCCCCCCh
Q 025171 151 LDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG-LMSFEHPT--------REMKAMPRIDSE 220 (257)
Q Consensus 151 RD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g-~~~~~~~~--------~~~~~~~~~ds~ 220 (257)
||++|+|||||+.. ++.++||||.++|.....+.+++++||+++. +.+| +.++.... ++.-.+.|+||.
T Consensus 193 RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~~~~~C~FE~VYfarPdS~ 271 (479)
T PRK09123 193 RDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQPARFCIFEYVYFARPDSV 271 (479)
T ss_pred ECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCCCCCCChhheEEecCCCce
Confidence 99999999999997 5789999999999765556789999999965 4566 76543211 111136788885
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.6e-29 Score=244.21 Aligned_cols=186 Identities=18% Similarity=0.127 Sum_probs=144.4
Q ss_pred HHHHHHHHhcCCCCccceEe--------------------------cCcEEEEEecCCC--C--CCCCCCeEec---CCc
Q 025171 32 EEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPEN--P--NSVSQRWFCG---LHN 78 (257)
Q Consensus 32 ~~m~~~~~~RGPd~~~~~~~--------------------------~~~~~lg~~rl~~--~--~~~~QP~~~~---~~~ 78 (257)
-.++.+|.|||+|+.+.... .++++|||+|+++ . ..+.||+... .++
T Consensus 41 ~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ 120 (510)
T PRK07847 41 YYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGG 120 (510)
T ss_pred HHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCC
Confidence 46788999999999883221 2457999999982 2 2579998752 578
Q ss_pred EEEEEEeEEeehhhHHHHhC---C------CCCCCHHHHHHHHHHHHHhcCC--chHHHhhcccccceEEEEEEcCCCEE
Q 025171 79 VYCMFMGSLNNLSSLNKQYG---L------SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKAGTI 147 (257)
Q Consensus 79 ~~lv~nGeI~N~~eL~~~l~---~------~~s~~D~evll~~y~~~~~~G~--~~~~~~l~~L~G~FAfvi~D~~~~~l 147 (257)
++++|||+|+|+.+||++|. . +.+.+|+|+|+++|......+. ..+.+++++|+|+|||+++|. ++|
T Consensus 121 ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L 198 (510)
T PRK07847 121 VALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--HTL 198 (510)
T ss_pred EEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--CEE
Confidence 99999999999999999884 2 6899999999999974221111 123579999999999999994 789
Q ss_pred EEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEe--cCC-----CccccCCCCCC
Q 025171 148 FAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE--HPT-----REMKAMPRIDS 219 (257)
Q Consensus 148 ~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~--~~~-----~~~~~~~~~ds 219 (257)
+++||++|+|||||+.. ++.++||||.++|.....+.+.+++||+++. +++|+..+. .+. ++.-.+.|+||
T Consensus 199 ~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~~~~~~C~fE~vYfarpdS 277 (510)
T PRK07847 199 YAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAEPTPKGCVFEYVYLARPDT 277 (510)
T ss_pred EEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccCCCCCCCeEEEEEecCCcc
Confidence 99999999999999997 5679999999999876556799999999975 466765532 221 11124688888
Q ss_pred h
Q 025171 220 E 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 278 ~ 278 (510)
T PRK07847 278 T 278 (510)
T ss_pred e
Confidence 5
No 24
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.97 E-value=4.3e-29 Score=222.46 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHhcCCCCccceEe--------------------------cCcEEEEEecCC--CC--CCCCCCeEe--cC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINF--------------------------GNAAALAYVPPE--NP--NSVSQRWFC--GL 76 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~--------------------------~~~~~lg~~rl~--~~--~~~~QP~~~--~~ 76 (257)
..+-.|++.|.|||||+.+.+.. .+.++|||+|++ +. ..+.||+.. .+
T Consensus 14 ~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~ 93 (252)
T cd00715 14 RLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPL 93 (252)
T ss_pred HHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecCC
Confidence 34668999999999999884433 235789999998 22 257999975 24
Q ss_pred CcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc-----hHHHhhcccccceEEEEEEcCCCEE
Q 025171 77 HNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY-----PAHQVLRDLDGSFGFVLYDCKAGTI 147 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~-----~~~~~l~~L~G~FAfvi~D~~~~~l 147 (257)
++++++|||+|+|+++|+++|. .+.+.+|+|+++++|. +++.. .+.+++++|+|.|||+++|. ++|
T Consensus 94 ~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~---~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l 168 (252)
T cd00715 94 GGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIA---RSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGL 168 (252)
T ss_pred CcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHH---HhhccCCHHHHHHHHHHhccCceEEEEEEC--CEE
Confidence 7899999999999999999884 2578999999999998 44421 12478999999999999996 899
Q ss_pred EEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEEe-CCceEEE
Q 025171 148 FAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGLMSF 204 (257)
Q Consensus 148 ~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~~ 204 (257)
+++||++|+|||||+...++.++||||.++|.....+.+.++|||+++.. .+++..+
T Consensus 169 ~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 169 IAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred EEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 99999999999999987437899999999998754456899999999764 5666554
No 25
>PLN02440 amidophosphoribosyltransferase
Probab=99.97 E-value=3.1e-29 Score=241.53 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=138.2
Q ss_pred CHHHHHHHHHhcCCCCccceE--------------------------ecCcEEEEEecCC--CC--CCCCCCeEec--CC
Q 025171 30 HPEEIFNEFLISQSSNAFSIN--------------------------FGNAAALAYVPPE--NP--NSVSQRWFCG--LH 77 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~--------------------------~~~~~~lg~~rl~--~~--~~~~QP~~~~--~~ 77 (257)
.+-.|+.+|.|||+|+.+... +.++++|||+|++ +. ..+.||+... .+
T Consensus 16 ~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g 95 (479)
T PLN02440 16 LCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFG 95 (479)
T ss_pred HHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCceeecCCC
Confidence 567899999999999888432 1456899999998 22 3689999753 46
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC-chHHHhhcccccceEEEEEEcCCCEEEEEEc
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~-~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD 152 (257)
+++++|||+|+|+.+||++|. .+.+.+|+|+|+++|........ ....+++++|+|+|||++||. ++|+++||
T Consensus 96 ~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~RD 173 (479)
T PLN02440 96 SIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAVRD 173 (479)
T ss_pred CEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEEEC
Confidence 799999999999999999984 37899999999999963211010 012589999999999999994 57999999
Q ss_pred CCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceE
Q 025171 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLM 202 (257)
Q Consensus 153 ~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~ 202 (257)
|+|+|||||+...++.++||||.++|.....+.+++++||+++. +++|+.
T Consensus 174 ~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~~ 224 (479)
T PLN02440 174 PHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKGV 224 (479)
T ss_pred CCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCcE
Confidence 99999999997645689999999999887667799999999965 466643
No 26
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=7.2e-29 Score=238.49 Aligned_cols=187 Identities=13% Similarity=0.125 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCCCCccceE--------------------------ecCcEEEEEecCC--CC--CCCCCCeEec--CCc
Q 025171 31 PEEIFNEFLISQSSNAFSIN--------------------------FGNAAALAYVPPE--NP--NSVSQRWFCG--LHN 78 (257)
Q Consensus 31 ~~~m~~~~~~RGPd~~~~~~--------------------------~~~~~~lg~~rl~--~~--~~~~QP~~~~--~~~ 78 (257)
.-.++.+|.|||+|+.|... +.++++|||+|++ +. ..+.||+... +++
T Consensus 32 ~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~ 111 (469)
T PRK05793 32 TYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGS 111 (469)
T ss_pred HHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCC
Confidence 34578999999999988432 1356899999998 22 3579999764 578
Q ss_pred EEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC-chHHHhhcccccceEEEEEEcCCCEEEEEEcC
Q 025171 79 VYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLYDCKAGTIFAALDA 153 (257)
Q Consensus 79 ~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~-~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~ 153 (257)
++++|||+|+|+.+||++|. .|.+.+|+|+++++|....+.+. ..+.+++++|+|+|||++++. ++++++||+
T Consensus 112 ~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~ 189 (469)
T PRK05793 112 IAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGVRDP 189 (469)
T ss_pred EEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEEECC
Confidence 99999999999999999984 37899999999999974221111 123578999999999999984 789999999
Q ss_pred CCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEecCC-Cc-------cccCCCCCCh
Q 025171 154 DEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEHPT-RE-------MKAMPRIDSE 220 (257)
Q Consensus 154 ~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~~~-~~-------~~~~~~~ds~ 220 (257)
+|+|||||+.. ++.++||||.++|.....+.+++++||++++ +++|+..+..+. .+ .-.+.|+||.
T Consensus 190 ~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~~~~C~fe~vYfarpds~ 264 (469)
T PRK05793 190 HGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIKSIKFAEKTKCQTCAFEYIYFARPDSV 264 (469)
T ss_pred CCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceEEEecCcCccccccEEEEEEeccCCcc
Confidence 99999999997 5789999999999877667789999999975 466766654221 11 1246888985
No 27
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.96 E-value=6.3e-29 Score=221.30 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHhcCC-CCccceEe------------------------------------cCcEEEEEecCCCC----C
Q 025171 28 PKHPEEIFNEFLISQS-SNAFSINF------------------------------------GNAAALAYVPPENP----N 66 (257)
Q Consensus 28 ~~~~~~m~~~~~~RGP-d~~~~~~~------------------------------------~~~~~lg~~rl~~~----~ 66 (257)
...+-.|+.+|.|||| |+++ +.. .+.++|||+|+++. .
T Consensus 16 ~~~~~~~l~~lqhRG~~dsaG-ia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~ 94 (249)
T cd01907 16 GALLVEMLDAMQERGPGDGAG-FALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWW 94 (249)
T ss_pred HHHHHHHHHHHHhcCCCCCce-EEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCc
Confidence 3467789999999999 8888 433 15689999999822 2
Q ss_pred CCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHH-hcCCc-------------------
Q 025171 67 SVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLR-DRGPY------------------- 122 (257)
Q Consensus 67 ~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~-~~G~~------------------- 122 (257)
.+.||+.. ++++++|||+|+|+.+||++|. .+.+.+|+|+++++|..+. +.|..
T Consensus 95 ~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~ 172 (249)
T cd01907 95 YGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLL 172 (249)
T ss_pred cCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHH
Confidence 58999865 4799999999999999999884 3789999999999997533 23320
Q ss_pred --hHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhc---CCceEEeCCCeEEE
Q 025171 123 --PAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---AKSFAPFPAGCMFH 196 (257)
Q Consensus 123 --~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~---~~~i~~~ppG~~~~ 196 (257)
....++++|+|+|||++++. ++++++|||+|.|||||+.. ++.++||||.++|...+ .+.+..+.||++++
T Consensus 173 ~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 173 ALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 11257899999999999984 67999999999999999997 57899999999998764 45688999999874
No 28
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.96 E-value=1.8e-28 Score=234.39 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=146.0
Q ss_pred CHHHHHHHHHhcCCCCccceE--------------------------ecCcEEEEEecCC--CC--CCCCCCeEe-cCCc
Q 025171 30 HPEEIFNEFLISQSSNAFSIN--------------------------FGNAAALAYVPPE--NP--NSVSQRWFC-GLHN 78 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~--------------------------~~~~~~lg~~rl~--~~--~~~~QP~~~-~~~~ 78 (257)
..-.++.+|.|||+|+.+... +.++++|||+|++ +. ..+.||+.. ..++
T Consensus 16 ~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g 95 (442)
T TIGR01134 16 LTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGG 95 (442)
T ss_pred HHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCC
Confidence 456799999999999888432 2357899999998 22 367999974 3456
Q ss_pred EEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC---chHHHhhcccccceEEEEEEcCCCEEEEEE
Q 025171 79 VYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP---YPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151 (257)
Q Consensus 79 ~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~---~~~~~~l~~L~G~FAfvi~D~~~~~l~~aR 151 (257)
++++|||+|+|+++|+++|. .+.+.+|+|+++++|......+. ..+.+++++|+|.|||+++| .++|+++|
T Consensus 96 ~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~L~a~R 173 (442)
T TIGR01134 96 IALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDGLIAVR 173 (442)
T ss_pred EEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCEEEEEE
Confidence 99999999999999999884 37889999999999973211111 12357899999999999997 57999999
Q ss_pred cCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEecCCCcc-------ccCCCCCCh
Q 025171 152 DADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEHPTREM-------KAMPRIDSE 220 (257)
Q Consensus 152 D~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~~~~~~~-------~~~~~~ds~ 220 (257)
|++|+|||||+.. ++.++||||.++|.....+.+++++||+++. +++|++++..+..+. -.+.|+||.
T Consensus 174 D~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~~c~fe~vYfarpds~ 249 (442)
T TIGR01134 174 DPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRAPCIFEYVYFARPDSV 249 (442)
T ss_pred CCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCcceEEEEEEecCCcce
Confidence 9999999999987 5789999999999865556799999999975 466776643221111 136888885
No 29
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=1.1e-29 Score=203.63 Aligned_cols=118 Identities=19% Similarity=0.369 Sum_probs=74.0
Q ss_pred EecCC--CCCCCCCCeE-ecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCchHHHhhccc
Q 025171 59 YVPPE--NPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDL 131 (257)
Q Consensus 59 ~~rl~--~~~~~~QP~~-~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L 131 (257)
|+||+ +...+.||+. +.++++++++||+|||+++|+++|. .+.+.+|+|+++++|+.+.++|. +++++|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~----~~~~~l 76 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGE----DFLKRL 76 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGG----GGGGT-
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH----HHHHhC
Confidence 78888 3447899998 5778899999999999999999995 26789999999999984444785 999999
Q ss_pred ccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHh
Q 025171 132 DGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 180 (257)
Q Consensus 132 ~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~ 180 (257)
+|.|||++||+.+++++++||++|+|||||+..+++.++||||+++|++
T Consensus 77 ~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 77 DGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp -EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999988999999999999999999984369999999999864
No 30
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=8.7e-29 Score=239.69 Aligned_cols=169 Identities=13% Similarity=0.116 Sum_probs=136.3
Q ss_pred CHHHHHHHHHhcCCCCccceEe---------------------------cCcEEEEEecCC--CC--CCCCCCeE-ecCC
Q 025171 30 HPEEIFNEFLISQSSNAFSINF---------------------------GNAAALAYVPPE--NP--NSVSQRWF-CGLH 77 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~---------------------------~~~~~lg~~rl~--~~--~~~~QP~~-~~~~ 77 (257)
.+-.|+.+|.|||||+.+ +.. .++++|||+||+ +. ..+.||+. ....
T Consensus 16 ~~~~~L~aLqHRGqdsaG-i~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~ 94 (501)
T PRK09246 16 SIYDALTVLQHRGQDAAG-IVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPY 94 (501)
T ss_pred HHHHHHHHHhccCcceeE-EEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCC
Confidence 456899999999999988 443 467899999998 22 36899996 3445
Q ss_pred cEEEEEEeEEeehhhHHHHhC-----CCCCCCHHHHHHHHHHHHHhc--C-----C---chHHHhhcccccceEEEEEEc
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG-----LSKGSNEAMFVIEAYRTLRDR--G-----P---YPAHQVLRDLDGSFGFVLYDC 142 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~-----~~~s~~D~evll~~y~~~~~~--G-----~---~~~~~~l~~L~G~FAfvi~D~ 142 (257)
+++++|||+|+|+++||++|. .+.+.+|+|+|+++|...... | . ..+.+++++|+|+|||+++..
T Consensus 95 g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~~~ 174 (501)
T PRK09246 95 GITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAMII 174 (501)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEEec
Confidence 699999999999999999873 368999999999999742111 2 1 123478999999999998843
Q ss_pred CCCEEEEEEcCCCCeEEEEEEeC---CCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCc
Q 025171 143 KAGTIFAALDADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG 200 (257)
Q Consensus 143 ~~~~l~~aRD~~G~rPLyyg~~~---~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g 200 (257)
.++|+++|||+|+|||||+... ++.++||||.++|.....+.+++++||++++ +++|
T Consensus 175 -~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 175 -GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred -CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 4579999999999999999863 3479999999999987777799999999865 4566
No 31
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.96 E-value=2.1e-28 Score=241.96 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHhcCCCCccceEe---------------------------cCcEEEEEecCC--CC--CCCCCCeEecCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINF---------------------------GNAAALAYVPPE--NP--NSVSQRWFCGLH 77 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~---------------------------~~~~~lg~~rl~--~~--~~~~QP~~~~~~ 77 (257)
..+-.|+.++.|||||+.+ ++. .++++|||+|++ +. ..+.||+...++
T Consensus 15 ~~~~~~l~~l~hRG~d~~G-i~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~ 93 (604)
T PRK00331 15 EILLEGLKRLEYRGYDSAG-IAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHGKPTERNAHPHTDCSG 93 (604)
T ss_pred HHHHHHHHHHhccCcCcce-EEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCCCCccccCCccccCCC
Confidence 3567899999999999988 443 456899999998 32 357999987778
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEEcCC-CEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKA-GTIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~---~~~~~l~~L~G~FAfvi~D~~~-~~l~~ 149 (257)
+++++|||+|||+++||++|. .+.+.+|+|+++++|..+.+.|.. .+.+++++|+|+|||++||..+ +++++
T Consensus 94 ~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~ 173 (604)
T PRK00331 94 RIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDTIVA 173 (604)
T ss_pred CEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCEEEE
Confidence 899999999999999999984 378999999999999854344521 2357999999999999999886 89999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEe
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 205 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~ 205 (257)
+||+ |||||+.. ++.++||||.++|...+. .+.+++||+++. +++|++.+.
T Consensus 174 ~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~~~~~~~~~ 225 (604)
T PRK00331 174 ARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLTRDGVEIFD 225 (604)
T ss_pred EECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEECCeEEEEe
Confidence 9995 99999997 578999999999998874 489999999865 466766554
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=1.9e-28 Score=211.31 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=135.9
Q ss_pred HHHHHHHHhcCCCCccceEec--------------------------CcEEEEEecCCCC----CCCCCCeEecCCcEEE
Q 025171 32 EEIFNEFLISQSSNAFSINFG--------------------------NAAALAYVPPENP----NSVSQRWFCGLHNVYC 81 (257)
Q Consensus 32 ~~m~~~~~~RGPd~~~~~~~~--------------------------~~~~lg~~rl~~~----~~~~QP~~~~~~~~~l 81 (257)
..|+..+.|||||+.+..+.. +.++|||+|+++. ..+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 479999999999998855443 2689999999822 3689999766568999
Q ss_pred EEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC-----chHHHhhcccccceEEEEEEcCCCEEEEEEc
Q 025171 82 MFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-----YPAHQVLRDLDGSFGFVLYDCKAGTIFAALD 152 (257)
Q Consensus 82 v~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~-----~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD 152 (257)
+|||+|+|+.+|+++|. .+.+.+|+|+++.+|. +++. ..+.+++++++|.|+|+++|..+++++++||
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd 177 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVILHLLE---RLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD 177 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHH---HHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEEC
Confidence 99999999999999875 3678999999999998 4541 1125899999999999999988899999999
Q ss_pred CCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEE
Q 025171 153 ADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMF 195 (257)
Q Consensus 153 ~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~ 195 (257)
++|.+||||+.+.++.++||||..++...+.+.+.++|||+++
T Consensus 178 ~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 9999999999973478999999999988765569999999863
No 33
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.96 E-value=4.5e-28 Score=239.73 Aligned_cols=171 Identities=11% Similarity=0.149 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHhcCCCCccceEe---------------------------cCcEEEEEecCC--CC--CCCCCCeEecCC
Q 025171 29 KHPEEIFNEFLISQSSNAFSINF---------------------------GNAAALAYVPPE--NP--NSVSQRWFCGLH 77 (257)
Q Consensus 29 ~~~~~m~~~~~~RGPd~~~~~~~---------------------------~~~~~lg~~rl~--~~--~~~~QP~~~~~~ 77 (257)
..+..|+.+|.|||||+++ ++. .+.++|||+|++ +. ..+.||+...++
T Consensus 14 ~~~~~~l~~l~hRG~ds~G-i~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~ 92 (607)
T TIGR01135 14 PILLEGLKRLEYRGYDSAG-IAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGG 92 (607)
T ss_pred HHHHHHHHHHhccCcccce-EEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcCcCCC
Confidence 3577899999999999988 443 456799999998 32 357999987777
Q ss_pred cEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEEcCC-CEEEE
Q 025171 78 NVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCKA-GTIFA 149 (257)
Q Consensus 78 ~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~---~~~~~l~~L~G~FAfvi~D~~~-~~l~~ 149 (257)
.++++|||+|||+.+||++|. .+.+.+|+|+++++|..+.+.|.. .+.+++++|+|+|||+++|+.+ +++++
T Consensus 93 ~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~ 172 (607)
T TIGR01135 93 RIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVA 172 (607)
T ss_pred CEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEEE
Confidence 899999999999999999984 378899999999999853322221 2357999999999999999875 46999
Q ss_pred EEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEe
Q 025171 150 ALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 205 (257)
Q Consensus 150 aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~ 205 (257)
+||+ |||||+.. ++.++||||.++|...+. .+.+++||+++. +++|+..+.
T Consensus 173 ~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~~~~~~~~~ 224 (607)
T TIGR01135 173 ARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILTRDGVRIYN 224 (607)
T ss_pred EECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEECCeeEEEe
Confidence 9995 99999986 578999999999998874 488999999875 456665553
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.94 E-value=2e-26 Score=229.37 Aligned_cols=171 Identities=11% Similarity=0.120 Sum_probs=140.1
Q ss_pred CHHHHHHHHHhcCCCCccceEec---------------------------------CcEEEEEecCC--CC--CCCCCCe
Q 025171 30 HPEEIFNEFLISQSSNAFSINFG---------------------------------NAAALAYVPPE--NP--NSVSQRW 72 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~~---------------------------------~~~~lg~~rl~--~~--~~~~QP~ 72 (257)
.+-.++.+|.|||+|++|....+ ++++|||+||+ +. ..+.||+
T Consensus 39 ~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~ 118 (640)
T PTZ00295 39 ILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPH 118 (640)
T ss_pred HHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCCCCC
Confidence 45678999999999987733321 24589999998 22 3679999
Q ss_pred EecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHhhcccccceEEEEEEcC-C
Q 025171 73 FCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLYDCK-A 144 (257)
Q Consensus 73 ~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~---~~~~~l~~L~G~FAfvi~D~~-~ 144 (257)
...+++++++|||+|+|+.+||++|. .+.+.+|+|+|+++|....++|.. .+.+++++|+|+|||+++|.. .
T Consensus 119 ~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~ 198 (640)
T PTZ00295 119 CDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIHKDNP 198 (640)
T ss_pred CCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEEeCCC
Confidence 87668899999999999999999984 378999999999999754445531 235789999999999999976 4
Q ss_pred CEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEEe
Q 025171 145 GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 205 (257)
Q Consensus 145 ~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~~ 205 (257)
++|+++||+ ||||||.. ++.++||||.++|...+.+ +..++||+++. +++|++.|.
T Consensus 199 ~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 199 DSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred CEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEEEEECCeEEEEe
Confidence 799999996 99999987 5679999999999988765 66799999975 467788776
No 35
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.93 E-value=8.9e-26 Score=183.07 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=106.8
Q ss_pred CCCccce--EecCcEEEEEecCCC---C-CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhCC----CCCCCHHHHHHHH
Q 025171 43 SSNAFSI--NFGNAAALAYVPPEN---P-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEA 112 (257)
Q Consensus 43 Pd~~~~~--~~~~~~~lg~~rl~~---~-~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~~D~evll~~ 112 (257)
||.++ + ++.+.++|||+|+++ + ..+.||+...+++++++|||+|+|+.+|+++|.. +.+.+|+|+++++
T Consensus 1 pd~~~-~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~l 79 (133)
T PF13522_consen 1 PDFEG-LASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAAL 79 (133)
T ss_pred CChHH-HHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 56555 4 667889999999982 2 2456999666788999999999999999999862 7889999999999
Q ss_pred HHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEec
Q 025171 113 YRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDN 174 (257)
Q Consensus 113 y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe 174 (257)
++ ++|. ++++.|+|+|+|++++...++++++||+.|.+||||+.. ++.++||||
T Consensus 80 i~---~~g~----~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 80 IH---RWGE----EALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HH---HHHH----HHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 97 6773 899999999999999988899999999999999999998 688999998
No 36
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.2e-24 Score=201.03 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=146.8
Q ss_pred CHHHHHHHHHhcCCCCccceEecC---------------------------cEEEEEecCCCC----CCCCCCeEecC--
Q 025171 30 HPEEIFNEFLISQSSNAFSINFGN---------------------------AAALAYVPPENP----NSVSQRWFCGL-- 76 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~~~---------------------------~~~lg~~rl~~~----~~~~QP~~~~~-- 76 (257)
..=..+-.|.|||-+..+....++ +++|||+||++. ..+.||++...
T Consensus 21 ~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~ 100 (470)
T COG0034 21 LTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPG 100 (470)
T ss_pred HHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCCCCcccccccceEEecCC
Confidence 345678999999998887433333 458999999832 36789997643
Q ss_pred CcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHh-cCC-chHHHhhcccccceEEEEEEcCCCEEEEE
Q 025171 77 HNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRD-RGP-YPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~-~G~-~~~~~~l~~L~G~FAfvi~D~~~~~l~~a 150 (257)
+.+.|+|||.|-|..+||++|. .|.+.+|+|++++++..-.. .+. ....++++.++|.||+++..+ +.|+++
T Consensus 101 g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~lia~ 178 (470)
T COG0034 101 GGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGLIAV 178 (470)
T ss_pred CcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeEEEE
Confidence 4699999999999999999995 37899999999999963111 111 123578899999999999985 599999
Q ss_pred EcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEEE--e-CCceEEEecCCC--------ccccCCCCCC
Q 025171 151 LDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH--S-EQGLMSFEHPTR--------EMKAMPRIDS 219 (257)
Q Consensus 151 RD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~~--~-~~g~~~~~~~~~--------~~~~~~~~ds 219 (257)
|||.|+|||.+|...+|.++||||.++|...+++.++++.||+.++ . ++|+.++.-... +.-.+.|+||
T Consensus 179 RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~~~~~~~C~fEyVYFARPDS 258 (470)
T COG0034 179 RDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAEPPRRAPCSFEYVYFARPDS 258 (470)
T ss_pred ECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccCCCCCccceEEEEEeecCcc
Confidence 9999999999999756669999999999999888899999999975 3 345655432111 1124789999
Q ss_pred h
Q 025171 220 E 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 259 ~ 259 (470)
T COG0034 259 V 259 (470)
T ss_pred c
Confidence 6
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.89 E-value=1.2e-22 Score=203.34 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=119.3
Q ss_pred CcEEEEEecCC--CC--CCCCCCeEec-CCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHH-HhcCC-
Q 025171 53 NAAALAYVPPE--NP--NSVSQRWFCG-LHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTL-RDRGP- 121 (257)
Q Consensus 53 ~~~~lg~~rl~--~~--~~~~QP~~~~-~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~-~~~G~- 121 (257)
++++|||+||+ +. ..+.||+... .+.+++||||+|+|+.+||++|. .|.+.+|+|++++++... ..+|.
T Consensus 86 g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~ 165 (680)
T PLN02981 86 NHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEE 165 (680)
T ss_pred CcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccc
Confidence 35799999998 32 3578999753 36799999999999999999984 388999999999995432 24432
Q ss_pred -------chHHHhhcccccceEEEEEEcCC-CEEEEEEcCCCCeEEEEEEeC--C---------------------CeEE
Q 025171 122 -------YPAHQVLRDLDGSFGFVLYDCKA-GTIFAALDADEGVRLFWGIAA--D---------------------GSVV 170 (257)
Q Consensus 122 -------~~~~~~l~~L~G~FAfvi~D~~~-~~l~~aRD~~G~rPLyyg~~~--~---------------------g~l~ 170 (257)
..+.+++++|+|+|||++++... +++|++||+ +||++|..+ + +.++
T Consensus 166 ~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (680)
T PLN02981 166 EGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFF 242 (680)
T ss_pred cCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEE
Confidence 12346899999999999999764 899999995 999999862 1 3699
Q ss_pred EEecchhhHhhcCCceEEeCCCeEEEe-CCceEEEe
Q 025171 171 ISDNLELIKASCAKSFAPFPAGCMFHS-EQGLMSFE 205 (257)
Q Consensus 171 fASe~~aL~~~~~~~i~~~ppG~~~~~-~~g~~~~~ 205 (257)
||||.++|...+ +.+..++||+++.. ++|+..|.
T Consensus 243 ~aSe~~al~~~~-~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 243 LASDASAVVEHT-KRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred EEeCHHHHHHhc-CEEEEECCCeEEEEECCeEEEEe
Confidence 999999999874 56999999999754 66776654
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.87 E-value=1.2e-21 Score=195.80 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=122.3
Q ss_pred ecCcEEEEEecCC--CC--CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHH-hcCC
Q 025171 51 FGNAAALAYVPPE--NP--NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLR-DRGP 121 (257)
Q Consensus 51 ~~~~~~lg~~rl~--~~--~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~-~~G~ 121 (257)
+.|+++|||+||+ +. ..+.||+...++.+++||||+|||+.+||++|. .|.+.+|+|+|+++++.+. ++|.
T Consensus 95 ~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~ 174 (670)
T PTZ00394 95 TSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGI 174 (670)
T ss_pred CCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCC
Confidence 3578999999998 32 367899987778899999999999999999984 3899999999998865422 4553
Q ss_pred ----chHHHhhcccccceEEEEEEcC-CCEEEEEEcCCCCeEEEEEEeCC--------------------CeEEEEecch
Q 025171 122 ----YPAHQVLRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGIAAD--------------------GSVVISDNLE 176 (257)
Q Consensus 122 ----~~~~~~l~~L~G~FAfvi~D~~-~~~l~~aRD~~G~rPLyyg~~~~--------------------g~l~fASe~~ 176 (257)
..+.+++++|+|+|||++.... .++|+++||+ +||++|..++ +.++||||+.
T Consensus 175 ~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~ 251 (670)
T PTZ00394 175 HNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVN 251 (670)
T ss_pred CCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChH
Confidence 1235899999999999999643 4899999997 9999999642 4799999999
Q ss_pred hhHhhcCCceEEeCCCeEEEe-CCceEEEe
Q 025171 177 LIKASCAKSFAPFPAGCMFHS-EQGLMSFE 205 (257)
Q Consensus 177 aL~~~~~~~i~~~ppG~~~~~-~~g~~~~~ 205 (257)
+|...+.+ +..|++|++... ++++..|.
T Consensus 252 a~~~~t~~-~~~l~dg~~~~~~~~~~~~~~ 280 (670)
T PTZ00394 252 SFAEYTRE-VVFLEDGDIAHYCDGALRFYN 280 (670)
T ss_pred HHHHhhce-EEEecCCeEEEEECCEEEEEe
Confidence 99998854 889999999755 45554443
No 39
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.86 E-value=6e-21 Score=175.00 Aligned_cols=196 Identities=18% Similarity=0.236 Sum_probs=145.4
Q ss_pred HHHHhcCCCCccceEec---------------------------CcEEEEEecCCCC----CCCCCCeEec--CCcEEEE
Q 025171 36 NEFLISQSSNAFSINFG---------------------------NAAALAYVPPENP----NSVSQRWFCG--LHNVYCM 82 (257)
Q Consensus 36 ~~~~~RGPd~~~~~~~~---------------------------~~~~lg~~rl~~~----~~~~QP~~~~--~~~~~lv 82 (257)
-+|.|||-++.+.+..+ |+.+|||+||++. ..+.|||+.. -+.+.+.
T Consensus 24 ~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavA 103 (474)
T KOG0572|consen 24 VALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVA 103 (474)
T ss_pred HHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccccccccccccceEeeccCceEEEe
Confidence 57899999877744322 3689999999832 3689999754 3569999
Q ss_pred EEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHH-H----HhcCC-c--hHHHhhcccccceEEEEEEcCCCEEEEE
Q 025171 83 FMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRT-L----RDRGP-Y--PAHQVLRDLDGSFGFVLYDCKAGTIFAA 150 (257)
Q Consensus 83 ~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~-~----~~~G~-~--~~~~~l~~L~G~FAfvi~D~~~~~l~~a 150 (257)
|||+|-|+++||+++. .+.+.+|+|+|++++.. + +..++ . .+.++++.++|.|++++.-. ++||+.
T Consensus 104 HNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~av 181 (474)
T KOG0572|consen 104 HNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAV 181 (474)
T ss_pred ccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEE
Confidence 9999999999999885 37899999999999842 1 11222 1 23688999999999999974 679999
Q ss_pred EcCCCCeEEEEEEeCC--C--eEEEEecchhhHhhcCCceEEeCCCeEEE-eCCceEEE---ecCC-Ccc-------ccC
Q 025171 151 LDADEGVRLFWGIAAD--G--SVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSF---EHPT-REM-------KAM 214 (257)
Q Consensus 151 RD~~G~rPLyyg~~~~--g--~l~fASe~~aL~~~~~~~i~~~ppG~~~~-~~~g~~~~---~~~~-~~~-------~~~ 214 (257)
|||+|.|||+.|...+ + .++||||.++++...++..+++.||+++. +..|.++- ..|. +++ -.+
T Consensus 182 RDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~~s~~~~~~~~~~~~~~cIFEyvYF 261 (474)
T KOG0572|consen 182 RDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGVKSVDIMKRPDENRMAFCIFEYVYF 261 (474)
T ss_pred ecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCCceeeeeecCCccccccceeeeEEEe
Confidence 9999999999998543 2 79999999999998888889999999964 45553332 2232 122 246
Q ss_pred CCCCCh--hh-------hccceEEEeec
Q 025171 215 PRIDSE--GV-------MCGANFKVDVQ 233 (257)
Q Consensus 215 ~~~ds~--~~-------~~~~~f~~~~~ 233 (257)
.|.||. |+ .||...-.+..
T Consensus 262 ArpdSi~eG~sVY~~R~~~G~~LA~e~P 289 (474)
T KOG0572|consen 262 ARPDSIFEGQSVYTVRLQCGEQLATEAP 289 (474)
T ss_pred ccCCceecccchHHHHHHHHhHhhhcCC
Confidence 888984 32 56655544433
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.3e-18 Score=169.35 Aligned_cols=143 Identities=14% Similarity=0.249 Sum_probs=120.0
Q ss_pred CcEEEEEecCC---CC-CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCC-ch
Q 025171 53 NAAALAYVPPE---NP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-YP 123 (257)
Q Consensus 53 ~~~~lg~~rl~---~~-~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~-~~ 123 (257)
+.++|||+|++ .| ..+++|+++ +++++||||.|.||.+||++|. .|.|++|+|+|.++++...+.+. ..
T Consensus 66 ~~~gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a 143 (597)
T COG0449 66 GGVGIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEA 143 (597)
T ss_pred CceeeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHH
Confidence 47899999998 33 378999865 7899999999999999999995 38999999999999976544442 12
Q ss_pred HHHhhcccccceEEEEEEcCC-CEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEEeCCCeEE-EeCCce
Q 025171 124 AHQVLRDLDGSFGFVLYDCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMF-HSEQGL 201 (257)
Q Consensus 124 ~~~~l~~L~G~FAfvi~D~~~-~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~~ppG~~~-~~~~g~ 201 (257)
...++++|+|.||+++.|.+. +++++||. | .||+.|.. ++..++||+..+++..+.+ +..+.+|.+. ++.+++
T Consensus 144 ~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 144 VKKVLKRLEGSYALLCTHSDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGDIAKLTTDGV 218 (597)
T ss_pred HHHHHHHhcceeEEEEEecCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCCEEEEECCcE
Confidence 357899999999999999986 79999999 3 99999997 5788999999999998855 7889999985 446666
Q ss_pred E
Q 025171 202 M 202 (257)
Q Consensus 202 ~ 202 (257)
.
T Consensus 219 ~ 219 (597)
T COG0449 219 S 219 (597)
T ss_pred E
Confidence 5
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.71 E-value=2.6e-16 Score=148.57 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=106.3
Q ss_pred CcEEEEEecCCCCC----CCCCCeEecCCcEEEEEEeEEeehhhHHHHhC---------------------CCCCCCHHH
Q 025171 53 NAAALAYVPPENPN----SVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG---------------------LSKGSNEAM 107 (257)
Q Consensus 53 ~~~~lg~~rl~~~~----~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~---------------------~~~s~~D~e 107 (257)
+..+|+|+|+++.. ..+||+. +++|||||.|+..+++.+. ...+.||++
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~ 274 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSA 274 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHH
Confidence 46889999998332 5789974 4899999999998776441 124689999
Q ss_pred HHHHHHHHHHhcCCchH---H-------------------------HhhcccccceEEEEEEcCCCEEEEEEcCCCCeEE
Q 025171 108 FVIEAYRTLRDRGPYPA---H-------------------------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRL 159 (257)
Q Consensus 108 vll~~y~~~~~~G~~~~---~-------------------------~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPL 159 (257)
++.++++.+...|.... . .+++.++|.||+++.| .+.++++|||.|.|||
T Consensus 275 ~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~d--g~~i~a~rDrnGlRPl 352 (413)
T cd00713 275 SLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTD--GRQVGASLDRNGLRPA 352 (413)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEe--CCEEEEEeCCCCCcce
Confidence 99999976655453111 1 4568899999999988 4789999999999999
Q ss_pred EEEEeCCCeEEEEecchhhHhhcCCceE---EeCCCeEEEe
Q 025171 160 FWGIAADGSVVISDNLELIKASCAKSFA---PFPAGCMFHS 197 (257)
Q Consensus 160 yyg~~~~g~l~fASe~~aL~~~~~~~i~---~~ppG~~~~~ 197 (257)
+|+.++++.++||||..+|.. ..+.|. ++.||+++..
T Consensus 353 ~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~i 392 (413)
T cd00713 353 RYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLV 392 (413)
T ss_pred EEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEE
Confidence 999886667999999999865 334465 7899999754
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.67 E-value=7.8e-16 Score=137.58 Aligned_cols=137 Identities=19% Similarity=0.255 Sum_probs=108.3
Q ss_pred cCcEEEEEecCC--CC--CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC-----CCCCCCHHHHHHHHHHHHH-hcCC
Q 025171 52 GNAAALAYVPPE--NP--NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG-----LSKGSNEAMFVIEAYRTLR-DRGP 121 (257)
Q Consensus 52 ~~~~~lg~~rl~--~~--~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~-----~~~s~~D~evll~~y~~~~-~~G~ 121 (257)
.+.++|||+|++ +. ..+.|||.. ++++++|||.|.|+.+|+..+. .+.+.+|+|++++++.... +.+.
T Consensus 79 ~~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~ 156 (257)
T cd01908 79 KSPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDP 156 (257)
T ss_pred cccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCC
Confidence 467899999998 21 367999865 4799999999999999998874 2688999999999886432 2221
Q ss_pred -------chHHHhhcccc-----cceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeC-----------------CCeEEEE
Q 025171 122 -------YPAHQVLRDLD-----GSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA-----------------DGSVVIS 172 (257)
Q Consensus 122 -------~~~~~~l~~L~-----G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~-----------------~g~l~fA 172 (257)
..+.+.++.|+ |.|+|++.|. ++|+++||+. .+||||+... ++.++||
T Consensus 157 ~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vva 233 (257)
T cd01908 157 LDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVA 233 (257)
T ss_pred cchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEE
Confidence 12356788888 7899988874 7899999988 8999999863 3689999
Q ss_pred ecchhhHhhcCCceEEeCCCeEEEe
Q 025171 173 DNLELIKASCAKSFAPFPAGCMFHS 197 (257)
Q Consensus 173 Se~~aL~~~~~~~i~~~ppG~~~~~ 197 (257)
||.-+... .+.++|||+++..
T Consensus 234 SE~l~~~~----~w~~v~~ge~~~i 254 (257)
T cd01908 234 SEPLTDDE----GWTEVPPGELVVV 254 (257)
T ss_pred eCCCCCCC----CceEeCCCEEEEE
Confidence 99876543 4899999999764
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.61 E-value=1.3e-14 Score=129.54 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=104.2
Q ss_pred CcEEEEEecCC--C-C-C-CCCCCeEecCCcEEEEEEeEEeehh-----hHHHHhC-----CCCCCCHHHHHHHHHHHHH
Q 025171 53 NAAALAYVPPE--N-P-N-SVSQRWFCGLHNVYCMFMGSLNNLS-----SLNKQYG-----LSKGSNEAMFVIEAYRTLR 117 (257)
Q Consensus 53 ~~~~lg~~rl~--~-~-~-~~~QP~~~~~~~~~lv~nGeI~N~~-----eL~~~l~-----~~~s~~D~evll~~y~~~~ 117 (257)
..++|||+|++ + + . .+.|||.. ++++++|||.|.|++ +|+++|. .+.+.+|+|++++++....
T Consensus 82 s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~ 159 (251)
T TIGR03442 82 SGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRL 159 (251)
T ss_pred cceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHH
Confidence 46789999998 2 2 2 68999874 689999999999997 5666553 3678999999998886432
Q ss_pred -hcCCch----HHHhhcccccc-------eEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCc
Q 025171 118 -DRGPYP----AHQVLRDLDGS-------FGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKS 185 (257)
Q Consensus 118 -~~G~~~----~~~~l~~L~G~-------FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~ 185 (257)
+..+.. +.++++.|.|. |+|++-| .++||+.||+. ||||+.. ++.++||||. |... ..
T Consensus 160 ~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~--~~ 229 (251)
T TIGR03442 160 LENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD--PG 229 (251)
T ss_pred hhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC--CC
Confidence 211111 24677778888 9999998 57999999985 9999987 4689999998 3221 26
Q ss_pred eEEeCCCeEEEe-CCceE
Q 025171 186 FAPFPAGCMFHS-EQGLM 202 (257)
Q Consensus 186 i~~~ppG~~~~~-~~g~~ 202 (257)
++++|||++++. ++++.
T Consensus 230 W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 230 WQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred ceEeCCCeEEEEECCcEE
Confidence 999999999765 55554
No 44
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.56 E-value=3.1e-14 Score=133.46 Aligned_cols=148 Identities=12% Similarity=0.151 Sum_probs=108.5
Q ss_pred CHHHHHHHHHhcCCCCccceEecCcEE---EEEecCC--CCCCCCCCeEecCCcEEEEEEeEEeehhhHHHHhCCCCCCC
Q 025171 30 HPEEIFNEFLISQSSNAFSINFGNAAA---LAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSN 104 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~~~~~~---lg~~rl~--~~~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~~~s~~ 104 (257)
..+.|.-.+..||||.+..+..+...+ ++-..|. + ....||+.. +++.++.|||+|||-+- ..+..
T Consensus 19 i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~-d~~~vfl~NGeIyn~~~-------s~~~~ 89 (520)
T KOG0573|consen 19 ISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVE-DDRYVFLFNGEIYNGEK-------SDTLF 89 (520)
T ss_pred hhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceec-ccceEEEecceeccCCC-------ccccc
Confidence 457889999999999877666654222 2222222 3 256899754 45589999999999762 35567
Q ss_pred HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCC
Q 025171 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK 184 (257)
Q Consensus 105 D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~ 184 (257)
|+.+|++....+.+.| .+.+.++.++|.|||++||.+.++||++||++|+|+|.|+.++.+..++.|... ...+
T Consensus 90 d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g----~~~~ 163 (520)
T KOG0573|consen 90 DTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG----TSGK 163 (520)
T ss_pred hHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc----cCCc
Confidence 9999999887544333 246888999999999999999999999999999999999998655444434322 1234
Q ss_pred ceEEeCCC
Q 025171 185 SFAPFPAG 192 (257)
Q Consensus 185 ~i~~~ppG 192 (257)
.|.++||+
T Consensus 164 ~i~e~~~~ 171 (520)
T KOG0573|consen 164 LIYEVPPV 171 (520)
T ss_pred cccccCch
Confidence 47789999
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.52 E-value=1.7e-13 Score=128.19 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred ecCcEEEEEecCCCC----CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCC----------------CCHH
Q 025171 51 FGNAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKG----------------SNEA 106 (257)
Q Consensus 51 ~~~~~~lg~~rl~~~----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s----------------~~D~ 106 (257)
+.+..+|+|+|+++. -.++||+. +++|||||.|+..++..+. ...+ .||+
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 446799999999832 26799986 7999999999999988763 2334 8999
Q ss_pred HHHHHHHHHHHhcCC--------------------c--------hHHHhhcccccceEEEEEEcCCCEEEEEEcCCCCeE
Q 025171 107 MFVIEAYRTLRDRGP--------------------Y--------PAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVR 158 (257)
Q Consensus 107 evll~~y~~~~~~G~--------------------~--------~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rP 158 (257)
+++..+++.+.+.|. . -...+++.++|.|++++.|. +.++++|||.|.||
T Consensus 267 ~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP 344 (361)
T PF00310_consen 267 EVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRP 344 (361)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcc
Confidence 999999877655551 0 01356788999999999874 57999999999999
Q ss_pred EEEEEeCCCeEEEEecc
Q 025171 159 LFWGIAADGSVVISDNL 175 (257)
Q Consensus 159 Lyyg~~~~g~l~fASe~ 175 (257)
+.|+.++|+.+++|||.
T Consensus 345 ~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 345 LRYGITEDGLVVLASEA 361 (361)
T ss_dssp -EEEEETTCEEEEESST
T ss_pred eEEEEECCCEEEEEeCC
Confidence 99999977889999984
No 46
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.14 E-value=4.4e-10 Score=118.80 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=100.3
Q ss_pred cEEEEEecCCCC---C-CCCCCeEecCCcEEEEEEeEEeehhhHHH----H---h--------C----C-CCCCCHHHHH
Q 025171 54 AAALAYVPPENP---N-SVSQRWFCGLHNVYCMFMGSLNNLSSLNK----Q---Y--------G----L-SKGSNEAMFV 109 (257)
Q Consensus 54 ~~~lg~~rl~~~---~-~~~QP~~~~~~~~~lv~nGeI~N~~eL~~----~---l--------~----~-~~s~~D~evl 109 (257)
..++.|.|+++. . ..+|||. +++|||||.-+..-+. + + . + ....||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 578999999832 1 5689972 4799999975542211 1 1 0 1 2467899998
Q ss_pred HHHHHHHHhcCCc--------------------hH-H-------HhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEE
Q 025171 110 IEAYRTLRDRGPY--------------------PA-H-------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFW 161 (257)
Q Consensus 110 l~~y~~~~~~G~~--------------------~~-~-------~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyy 161 (257)
-.+++.|...|.. +. . .+++-++|.|++++.| .+.+++.|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccceE
Confidence 8888766555431 00 1 2455679999999998 589999999999999999
Q ss_pred EEeCCCeEEEEecchhhHhhcCCceE--EeCCCeEEEe
Q 025171 162 GIAADGSVVISDNLELIKASCAKSFA--PFPAGCMFHS 197 (257)
Q Consensus 162 g~~~~g~l~fASe~~aL~~~~~~~i~--~~ppG~~~~~ 197 (257)
+.++|+.+++|||..+|.....+.++ ++.||+++..
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~i 402 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVI 402 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEE
Confidence 98877789999999998765556566 8999999754
No 47
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.03 E-value=3.6e-10 Score=108.06 Aligned_cols=129 Identities=16% Similarity=0.257 Sum_probs=92.4
Q ss_pred CHHHHHHHHHhcCCCCccceEecCcEEEEEecCC---CC-CCCCCCeEe-cCCcEEEEEEeEEeehhhHHHHhC---C-C
Q 025171 30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE---NP-NSVSQRWFC-GLHNVYCMFMGSLNNLSSLNKQYG---L-S 100 (257)
Q Consensus 30 ~~~~m~~~~~~RGPd~~~~~~~~~~~~lg~~rl~---~~-~~~~QP~~~-~~~~~~lv~nGeI~N~~eL~~~l~---~-~ 100 (257)
+++.+.+.+..-+.|-. .....+++|+|+|++ .+ ..+.+|+.+ +.+.+++||||.|.||++||..|. . |
T Consensus 58 kVkaL~e~i~~q~~~l~--~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~F 135 (670)
T KOG1268|consen 58 KVSSLKEEINNQNLNLD--EKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVF 135 (670)
T ss_pred ceeehhHHHhhcCcccc--eeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCcee
Confidence 34444555554444322 344457899999998 23 367889854 457899999999999999999885 2 8
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--c----hHHHhhcccccceEEEEEEcC-CCEEEEEEcCCCCeEEEEEE
Q 025171 101 KGSNEAMFVIEAYRTLRDRGP--Y----PAHQVLRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGI 163 (257)
Q Consensus 101 ~s~~D~evll~~y~~~~~~G~--~----~~~~~l~~L~G~FAfvi~D~~-~~~l~~aRD~~G~rPLyyg~ 163 (257)
.+.+|+|.+..+++.+.+.-+ + ..+.++++|+|.||+++-... .+++.+.|+ | .||..|.
T Consensus 136 ESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGv 202 (670)
T KOG1268|consen 136 ESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGV 202 (670)
T ss_pred ecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeee
Confidence 899999999999976444322 1 135789999999999986543 378999998 3 5566543
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.55 E-value=4.4e-07 Score=82.04 Aligned_cols=140 Identities=19% Similarity=0.310 Sum_probs=70.6
Q ss_pred cEEEEEecCCCC----CCCCCCeEec--CCcEEEEEEeEEeehhhHH-HHhCCCCCCCHHHHHHHHHHH-HHhcCC---c
Q 025171 54 AAALAYVPPENP----NSVSQRWFCG--LHNVYCMFMGSLNNLSSLN-KQYGLSKGSNEAMFVIEAYRT-LRDRGP---Y 122 (257)
Q Consensus 54 ~~~lg~~rl~~~----~~~~QP~~~~--~~~~~lv~nGeI~N~~eL~-~~l~~~~s~~D~evll~~y~~-~~~~G~---~ 122 (257)
...|+|+|.++. ..+.|||... .++.+.+|||.|.+++.++ ..|. ..+.+|+|.+..++.. +.+.+. .
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~ 150 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPP 150 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--H
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccc
Confidence 467999998821 3689998753 3568999999999987665 2333 5789999999888753 333331 1
Q ss_pred h-------HHHhhcccc--cceEEEEEEcCCCEEEEEEcC----CCCeEEE-------------EE---EeCCCeEEEEe
Q 025171 123 P-------AHQVLRDLD--GSFGFVLYDCKAGTIFAALDA----DEGVRLF-------------WG---IAADGSVVISD 173 (257)
Q Consensus 123 ~-------~~~~l~~L~--G~FAfvi~D~~~~~l~~aRD~----~G~rPLy-------------yg---~~~~g~l~fAS 173 (257)
. +.+..+.+. |.++|++.| .++|++.|+. .-+++.+ .. ...+..++|||
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~N~~lsD--G~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaS 228 (271)
T PF13230_consen 151 ALEELFEALRELAKEINEYGSLNFLLSD--GERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVAS 228 (271)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEEEE---SS-EEEEEEESSS----------------------EEEEETTTTEEEEES
T ss_pred cHHHHHHHHHHHHHHhccCeeEEEEEEC--CceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEe
Confidence 1 123444443 789999988 4789999982 1122222 11 11235788899
Q ss_pred cchhhHhhcCCceEEeCCCeEEEeCCc
Q 025171 174 NLELIKASCAKSFAPFPAGCMFHSEQG 200 (257)
Q Consensus 174 e~~aL~~~~~~~i~~~ppG~~~~~~~g 200 (257)
|.=. . ...+.++|+|++++.++|
T Consensus 229 ePLt--~--~e~W~~vp~g~~l~~~~G 251 (271)
T PF13230_consen 229 EPLT--D--DEDWEPVPPGSLLVFRDG 251 (271)
T ss_dssp S--------SS--EE--SSEEEE----
T ss_pred ccCC--C--CCCeEEcCCCcEEEEecc
Confidence 8532 1 235999999999877656
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.14 E-value=9.3e-06 Score=76.08 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=97.1
Q ss_pred CcEEEEEecCCCC----CCCCCCeEecCCcEEEEEEeEEeehhhHHHHhC----CCCCCCHHHHHHHHHHHHHhcCCch-
Q 025171 53 NAAALAYVPPENP----NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYP- 123 (257)
Q Consensus 53 ~~~~lg~~rl~~~----~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~----~~~s~~D~evll~~y~~~~~~G~~~- 123 (257)
+..+|+|+|.++. -..+||+. .++|||||.++...++-+. .+.+.+|+|.+..++-.+.+.|-+.
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~ 275 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSA 275 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcch
Confidence 4689999999832 15789972 4599999999986655442 4778899988888774332332110
Q ss_pred ----H----------HHhhcccccceEEEEEEc-CCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCceEE
Q 025171 124 ----A----------HQVLRDLDGSFGFVLYDC-KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 188 (257)
Q Consensus 124 ----~----------~~~l~~L~G~FAfvi~D~-~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~i~~ 188 (257)
. ..-...|.|.||++.-.. ..+...+.+|+.+.+|.+-|-. +..+.++|+.-|++.-+ .
T Consensus 276 ~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrn-----g 349 (371)
T COG0067 276 SLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRN-----G 349 (371)
T ss_pred hhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccC-----C
Confidence 0 123446889999887531 2467888999999999999986 56788999998887644 3
Q ss_pred eCCCeEEEeCCce
Q 025171 189 FPAGCMFHSEQGL 201 (257)
Q Consensus 189 ~ppG~~~~~~~g~ 201 (257)
+.|+.|+..+++.
T Consensus 350 Lrp~Ry~~t~d~~ 362 (371)
T COG0067 350 LRPARYWITKDGE 362 (371)
T ss_pred CCcceEEEecCCE
Confidence 7788887776553
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.01 E-value=7.9e-05 Score=62.86 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCCeEecCCcEEEEEEeEEeehhhHHHHhCC----CCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCC
Q 025171 69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKA 144 (257)
Q Consensus 69 ~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~----~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~ 144 (257)
-|.+..+.+ ..-.-|.|||+.-|+.-.+. ....+|+|+++..|. +-|. .++.--+|+|+|.|=|+ +
T Consensus 41 ~qk~~~~~~--tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~---~lG~----~aLsLAEGdfcffiE~k-n 110 (201)
T PF09147_consen 41 FQKMRFERG--TAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFT---RLGN----SALSLAEGDFCFFIEDK-N 110 (201)
T ss_dssp EEEEEETTE--EEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHH---HH-G----GGGGG--SSEEEEEEET-T
T ss_pred eeEEEecCc--cEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHH---Hhhh----hhhhhhcCceEEEEecC-C
Confidence 344444333 34456999999988876653 345799999999888 6775 88999999999999775 7
Q ss_pred CEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhh
Q 025171 145 GTIFAALDADEGVRLFWGIAADGSVVISDNLELI 178 (257)
Q Consensus 145 ~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL 178 (257)
++|.+..|+-|.-|.|.-.+ +..|+...+|.+
T Consensus 111 g~L~l~Tds~G~~pv~lV~~--~~~WiTn~LK~V 142 (201)
T PF09147_consen 111 GELTLITDSRGFNPVYLVQS--KFIWITNSLKLV 142 (201)
T ss_dssp SEEEEEE-SSSSS-EEEEES--SSEEEES-HHHH
T ss_pred CcEEEEecCCCCceEEEEec--CceEEecceEEE
Confidence 99999999999999998765 468888887755
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.49 E-value=0.043 Score=49.25 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=38.0
Q ss_pred cCcEEEEEecCCCC----CCCCCCeEecC--CcEEEEEEeEEeehhhH-HHHhCCCCCCCHHHHH
Q 025171 52 GNAAALAYVPPENP----NSVSQRWFCGL--HNVYCMFMGSLNNLSSL-NKQYGLSKGSNEAMFV 109 (257)
Q Consensus 52 ~~~~~lg~~rl~~~----~~~~QP~~~~~--~~~~lv~nGeI~N~~eL-~~~l~~~~s~~D~evl 109 (257)
.+.+.|+|+|.++. ..+.||++.+. ..++++|||.|.+++.+ ...+. +...+|.+..
T Consensus 69 ~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~ 132 (252)
T COG0121 69 KSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAA 132 (252)
T ss_pred CccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHH
Confidence 34588999999822 36789987642 45789999999999873 33332 2334555443
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.44 E-value=2.1 Score=46.21 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=47.0
Q ss_pred hhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecchhhHhhcCCc--eEEeCCCeEEE
Q 025171 127 VLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKS--FAPFPAGCMFH 196 (257)
Q Consensus 127 ~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~aL~~~~~~~--i~~~ppG~~~~ 196 (257)
.++-.+|.=-+.+-| .+.+=+.-|+.|.||-=|..+.|+.+++|||.-.+.--..+. =..+-||.++.
T Consensus 406 ~MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Mll 475 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLL 475 (2142)
T ss_pred cCCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEE
Confidence 356678886555555 466778889999999877777789999999976542211111 13588998864
No 53
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=82.37 E-value=4.8 Score=28.37 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCC--eEEEE
Q 025171 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--VRLFW 161 (257)
Q Consensus 104 ~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~--rPLyy 161 (257)
+|.+-++..++.+++.|. .-. .-+ +.+|...+++++..|. |+ |||+.
T Consensus 12 ~~p~~l~~~lr~~RR~g~-----i~~----~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGK-----ISK----EVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SSHHHHHHHHHHHHHTTS-----S-T----TSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred cCHHHHHHHHHHHhhccC-----Ccc----eeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 355667778887777773 222 223 5688889999999997 76 88875
No 54
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=61.07 E-value=15 Score=34.85 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.0
Q ss_pred HhhcccccceEEEEEEcCCCEEEEEEcCCCCeEEEEEEeCCCeEEEEecch
Q 025171 126 QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLE 176 (257)
Q Consensus 126 ~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~~g~l~fASe~~ 176 (257)
.+..-.+|.=+.+++|. .++-+.||+.|.||-=|..++++.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 45667899999999994 68899999999999988888789999999864
No 55
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=29.59 E-value=1.8e+02 Score=29.65 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=40.4
Q ss_pred EEEEEeEEeehhhHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEEcCCCEEEEEEcCCCC--e
Q 025171 80 YCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--V 157 (257)
Q Consensus 80 ~lv~nGeI~N~~eL~~~l~~~~s~~D~evll~~y~~~~~~G~~~~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~--r 157 (257)
.+..||.+.-+. .+.+-+++.++.+++.|. |. .+.=+.+|...+++++..|+ |+ |
T Consensus 6 ~VflNG~~vG~~------------~~~~~lv~~lR~lRr~g~---------i~-~~vsI~~~~~~~ei~I~tD~-GR~~R 62 (605)
T PRK07225 6 KVYVNGKLIGTH------------DDPEELVEEIREARRSGE---------IS-EEVNVSYKEETNEVIINTDA-GRARR 62 (605)
T ss_pred EEEECCEEEEEE------------CCHHHHHHHHHHHHccCC---------CC-CcEEEEEECCCCEEEEEccC-Cccce
Confidence 345577765432 245567777777767662 22 34446677777899999997 76 9
Q ss_pred EEEEEE
Q 025171 158 RLFWGI 163 (257)
Q Consensus 158 PLyyg~ 163 (257)
||+.-.
T Consensus 63 Pl~iv~ 68 (605)
T PRK07225 63 PLIVVE 68 (605)
T ss_pred eEEEEe
Confidence 998764
No 56
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=29.13 E-value=36 Score=28.47 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.6
Q ss_pred CcEEEEEEeEEeehhhHHH
Q 025171 77 HNVYCMFMGSLNNLSSLNK 95 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~ 95 (257)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5789999999999998764
No 57
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=28.77 E-value=38 Score=28.40 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=16.5
Q ss_pred CcEEEEEEeEEeehhhHHH
Q 025171 77 HNVYCMFMGSLNNLSSLNK 95 (257)
Q Consensus 77 ~~~~lv~nGeI~N~~eL~~ 95 (257)
+++.+||||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5789999999999998764
No 58
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=24.14 E-value=19 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=18.2
Q ss_pred ccceEEEEEEcCCCEEEEEEcCCCCeEEE
Q 025171 132 DGSFGFVLYDCKAGTIFAALDADEGVRLF 160 (257)
Q Consensus 132 ~G~FAfvi~D~~~~~l~~aRD~~G~rPLy 160 (257)
.|.|++|+++. ++++-. |.-|++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~-~~rGv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTS-DGRGVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHH
T ss_pred hCCceEEEEeC--CEEEEe-CCCChHHHH
Confidence 57899999974 566666 555999998
No 59
>PF03508 Connexin43: Gap junction alpha-1 protein (Cx43); InterPro: IPR013124 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-1 protein (also called connexin43, or Cx43) is a connexin of 381 amino acid residues (human isoform) that is widely expressed in several organs and cell types, and is the principal gap junction protein of the heart. Characterisation of genetically-engineered mice that lack Cx43, and also of human patients that have spontaneously-occurring mutations in the gene encoding it (GJA1), suggest Cx43 is essential for the development of normal cardiac architecture and ventricular conduction. Mice lacking Cx43 survive to term but die shortly after birth. They have cardiac malformations that lead to the obstruction of the pulmonary artery, leading to neonatal cyanosis, and subsequent death. This phenotype is reminiscent of some forms of stenosis of the pulmonary artery. Human subjects with visceroatrial heterotaxia (a heart disorder characterised by arterial defects), have been found to have points mutations in the Cx43-encoding gene, as a result of which a potential phosphorylation site within the C terminus is disrupted. Consequently, although these mutant Cx43 molecules still form functional gap junction channels, their response to protein kinase activation is impaired. This domain is found in the C-terminal region of these proteins.; PDB: 1R5S_A.
Probab=22.81 E-value=30 Score=18.53 Aligned_cols=8 Identities=63% Similarity=0.979 Sum_probs=2.6
Q ss_pred cccccccc
Q 025171 243 GSEANWAL 250 (257)
Q Consensus 243 ~~~~~~~~ 250 (257)
.|++|||.
T Consensus 13 a~eqnwan 20 (20)
T PF03508_consen 13 ASEQNWAN 20 (20)
T ss_dssp S-S-SS--
T ss_pred hhhhcccC
Confidence 35677763
No 60
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=21.18 E-value=53 Score=24.69 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=15.7
Q ss_pred EEEEcCCCCeEEEEEEeCCC
Q 025171 148 FAALDADEGVRLFWGIAADG 167 (257)
Q Consensus 148 ~~aRD~~G~rPLyyg~~~~g 167 (257)
-..++.+|++|||-|...++
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 44567899999999987654
Done!