Query 025172
Match_columns 256
No_of_seqs 148 out of 1752
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.2E-27 2.7E-32 211.1 16.6 214 1-224 113-335 (358)
2 PRK11453 O-acetylserine/cystei 99.9 9.7E-24 2.1E-28 183.0 16.9 191 1-220 95-290 (299)
3 PRK11689 aromatic amino acid e 99.9 5E-23 1.1E-27 178.2 15.7 191 1-220 100-290 (295)
4 PRK11272 putative DMT superfam 99.9 6.9E-23 1.5E-27 177.1 15.3 184 1-220 105-288 (292)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 3.6E-22 7.8E-27 169.5 16.6 177 1-212 82-259 (260)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 3.2E-22 6.9E-27 173.8 12.7 188 1-221 100-297 (302)
7 PF06027 DUF914: Eukaryotic pr 99.9 1.2E-20 2.6E-25 163.9 17.0 198 3-226 116-314 (334)
8 PRK10532 threonine and homoser 99.9 2.9E-20 6.2E-25 160.9 17.1 179 2-221 107-285 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.8 1.8E-20 3.9E-25 161.2 12.0 180 1-214 98-280 (281)
10 PTZ00343 triose or hexose phos 99.8 1.4E-19 3E-24 160.1 14.2 185 1-218 149-349 (350)
11 PRK15430 putative chlorampheni 99.8 1.4E-19 3.1E-24 156.7 12.1 177 1-217 108-285 (296)
12 COG0697 RhaT Permeases of the 99.8 3.2E-17 7E-22 140.4 17.1 182 1-218 105-288 (292)
13 KOG2765 Predicted membrane pro 99.7 9.6E-17 2.1E-21 137.6 14.0 196 2-221 195-394 (416)
14 KOG4510 Permease of the drug/m 99.7 5.2E-18 1.1E-22 139.2 5.1 197 1-220 132-328 (346)
15 COG2510 Predicted membrane pro 99.7 5.3E-16 1.1E-20 113.9 12.9 136 79-217 4-139 (140)
16 PF08449 UAA: UAA transporter 99.6 1.2E-14 2.7E-19 126.3 15.8 198 2-222 100-302 (303)
17 COG5006 rhtA Threonine/homoser 99.6 1.1E-14 2.3E-19 119.0 12.9 166 29-222 122-287 (292)
18 TIGR00776 RhaT RhaT L-rhamnose 99.6 1.7E-14 3.7E-19 124.6 14.3 182 2-218 96-289 (290)
19 PF00892 EamA: EamA-like trans 99.6 7.2E-15 1.6E-19 110.3 10.1 125 88-216 1-125 (126)
20 TIGR00688 rarD rarD protein. T 99.6 7.6E-15 1.6E-19 124.5 11.0 151 1-192 105-255 (256)
21 COG2962 RarD Predicted permeas 99.6 2.3E-14 4.9E-19 119.9 12.5 178 2-219 108-285 (293)
22 KOG2766 Predicted membrane pro 99.5 2.7E-13 5.8E-18 111.0 8.5 185 5-219 117-301 (336)
23 KOG1580 UDP-galactose transpor 99.4 3.6E-13 7.9E-18 109.1 8.0 192 3-220 122-316 (337)
24 KOG1441 Glucose-6-phosphate/ph 99.4 2.2E-12 4.9E-17 111.2 10.0 190 1-224 118-314 (316)
25 PRK15430 putative chlorampheni 99.4 2.6E-11 5.7E-16 105.1 15.0 137 76-216 6-144 (296)
26 TIGR00688 rarD rarD protein. T 99.3 5.2E-11 1.1E-15 101.0 14.0 136 78-216 2-141 (256)
27 PF03151 TPT: Triose-phosphate 99.3 1.4E-10 3.1E-15 90.4 14.1 138 79-217 1-153 (153)
28 TIGR03340 phn_DUF6 phosphonate 99.2 3.5E-10 7.5E-15 97.3 16.0 134 80-218 3-136 (281)
29 PLN00411 nodulin MtN21 family 99.2 6.7E-10 1.5E-14 98.5 15.0 140 77-218 12-157 (358)
30 PRK02971 4-amino-4-deoxy-L-ara 99.2 1.2E-09 2.7E-14 82.6 13.4 123 78-221 2-126 (129)
31 PF04142 Nuc_sug_transp: Nucle 99.1 3.3E-09 7.1E-14 89.2 14.0 189 3-208 54-244 (244)
32 TIGR00950 2A78 Carboxylate/Ami 99.1 2.5E-09 5.3E-14 90.6 13.0 120 90-218 1-120 (260)
33 PF13536 EmrE: Multidrug resis 99.1 1.3E-09 2.8E-14 81.0 9.6 108 113-221 3-110 (113)
34 PRK11272 putative DMT superfam 99.1 8.2E-09 1.8E-13 89.3 15.5 132 80-218 10-142 (292)
35 KOG1443 Predicted integral mem 99.1 6.7E-09 1.5E-13 87.6 14.1 181 2-215 120-313 (349)
36 KOG2234 Predicted UDP-galactos 99.0 9E-09 1.9E-13 88.8 14.7 192 4-221 130-326 (345)
37 PRK11453 O-acetylserine/cystei 99.0 1.2E-08 2.6E-13 88.5 14.9 126 81-218 7-133 (299)
38 KOG1583 UDP-N-acetylglucosamin 99.0 1.5E-08 3.2E-13 84.4 14.2 205 2-221 101-318 (330)
39 KOG1444 Nucleotide-sugar trans 99.0 4.2E-09 9.1E-14 89.6 10.9 191 1-224 112-307 (314)
40 KOG1581 UDP-galactose transpor 99.0 8.2E-09 1.8E-13 87.0 11.9 192 6-221 123-317 (327)
41 KOG1442 GDP-fucose transporter 98.9 1.3E-09 2.8E-14 90.4 5.7 194 2-225 138-335 (347)
42 PRK11689 aromatic amino acid e 98.9 3.7E-08 8E-13 85.3 15.1 131 78-218 4-138 (295)
43 TIGR00817 tpt Tpt phosphate/ph 98.8 9.5E-08 2.1E-12 83.0 14.2 121 92-216 16-136 (302)
44 PRK15051 4-amino-4-deoxy-L-ara 98.8 8E-08 1.7E-12 71.0 10.6 67 150-216 42-108 (111)
45 PTZ00343 triose or hexose phos 98.8 4.2E-07 9.2E-12 80.6 16.8 126 90-218 61-187 (350)
46 KOG1582 UDP-galactose transpor 98.7 5.4E-08 1.2E-12 80.9 8.0 185 8-221 148-336 (367)
47 COG2962 RarD Predicted permeas 98.7 2.9E-07 6.4E-12 77.5 11.8 138 78-218 7-145 (293)
48 TIGR00803 nst UDP-galactose tr 98.7 1.8E-07 4E-12 77.6 10.5 201 2-215 14-222 (222)
49 COG0697 RhaT Permeases of the 98.7 1.7E-06 3.8E-11 73.8 16.6 141 78-222 7-148 (292)
50 PF06800 Sugar_transport: Suga 98.7 8.4E-07 1.8E-11 74.9 13.7 178 4-214 84-268 (269)
51 KOG4314 Predicted carbohydrate 98.6 5.2E-07 1.1E-11 71.8 10.3 187 4-221 91-280 (290)
52 KOG3912 Predicted integral mem 98.6 1.6E-06 3.4E-11 72.7 12.9 192 3-216 123-333 (372)
53 TIGR00776 RhaT RhaT L-rhamnose 98.5 1.9E-06 4.1E-11 74.6 13.0 132 79-219 2-138 (290)
54 PRK10532 threonine and homoser 98.5 8.1E-06 1.7E-10 70.7 15.0 127 77-217 11-137 (293)
55 PF06027 DUF914: Eukaryotic pr 98.4 1.6E-05 3.4E-10 69.8 15.2 144 75-220 10-154 (334)
56 COG5070 VRG4 Nucleotide-sugar 98.4 5.7E-07 1.2E-11 72.9 4.9 146 77-223 154-302 (309)
57 PRK10452 multidrug efflux syst 98.3 9.6E-06 2.1E-10 60.4 10.5 69 151-219 36-105 (120)
58 PF05653 Mg_trans_NIPA: Magnes 98.3 5.5E-06 1.2E-10 71.9 10.3 75 144-219 213-294 (300)
59 PRK09541 emrE multidrug efflux 98.3 1.7E-05 3.7E-10 58.3 10.8 69 151-219 36-105 (110)
60 PRK10650 multidrug efflux syst 98.1 8.9E-05 1.9E-09 54.3 11.3 64 153-216 43-107 (109)
61 PF05653 Mg_trans_NIPA: Magnes 98.1 4.6E-05 9.9E-10 66.1 11.2 124 75-222 4-127 (300)
62 PF08449 UAA: UAA transporter 98.1 0.00014 3.1E-09 63.2 14.3 127 92-224 14-143 (303)
63 KOG4510 Permease of the drug/m 98.1 7.7E-07 1.7E-11 74.0 0.1 136 77-220 37-172 (346)
64 PRK11431 multidrug efflux syst 98.1 7.8E-05 1.7E-09 54.3 10.4 66 152-217 36-102 (105)
65 COG2076 EmrE Membrane transpor 98.1 2.7E-05 5.8E-10 56.3 7.8 67 153-219 38-105 (106)
66 PF04657 DUF606: Protein of un 98.0 0.00025 5.5E-09 54.4 13.1 131 80-214 3-138 (138)
67 PRK13499 rhamnose-proton sympo 97.9 0.00056 1.2E-08 60.2 14.7 194 4-218 112-342 (345)
68 KOG2922 Uncharacterized conser 97.8 0.00034 7.3E-09 60.0 11.9 190 4-219 102-308 (335)
69 PF00893 Multi_Drug_Res: Small 97.7 0.00038 8.2E-09 49.6 8.8 57 152-208 36-93 (93)
70 COG3238 Uncharacterized protei 97.6 0.0019 4E-08 49.9 12.0 138 78-218 5-147 (150)
71 PRK13499 rhamnose-proton sympo 97.4 0.0015 3.3E-08 57.5 10.6 139 76-221 5-157 (345)
72 PF04142 Nuc_sug_transp: Nucle 97.3 0.0011 2.4E-08 55.9 8.4 78 144-222 17-94 (244)
73 PF06800 Sugar_transport: Suga 97.3 0.0076 1.6E-07 51.2 12.5 82 142-224 43-129 (269)
74 PF10639 UPF0546: Uncharacteri 97.2 0.0036 7.8E-08 46.0 8.3 109 85-215 3-112 (113)
75 PF07857 DUF1632: CEO family ( 97.0 0.0074 1.6E-07 50.9 9.7 133 79-223 1-140 (254)
76 KOG2922 Uncharacterized conser 96.9 0.0008 1.7E-08 57.8 3.1 128 74-225 17-144 (335)
77 KOG1441 Glucose-6-phosphate/ph 96.8 0.0016 3.4E-08 56.7 4.1 124 93-219 32-157 (316)
78 COG4975 GlcU Putative glucose 96.7 0.0016 3.4E-08 54.0 3.7 133 78-220 2-139 (288)
79 PF13536 EmrE: Multidrug resis 96.7 0.00024 5.2E-09 52.5 -1.5 38 1-44 69-106 (113)
80 COG4975 GlcU Putative glucose 96.6 0.00019 4.1E-09 59.3 -2.4 179 6-217 100-285 (288)
81 KOG2234 Predicted UDP-galactos 96.5 0.26 5.7E-06 43.2 15.6 141 78-219 15-166 (345)
82 KOG4314 Predicted carbohydrate 96.0 0.0075 1.6E-07 48.5 3.4 65 158-222 66-130 (290)
83 KOG1580 UDP-galactose transpor 95.8 0.024 5.3E-07 46.8 5.8 131 88-224 23-164 (337)
84 KOG2765 Predicted membrane pro 95.6 0.016 3.4E-07 51.0 4.1 67 156-222 170-236 (416)
85 PRK15051 4-amino-4-deoxy-L-ara 95.4 0.0025 5.5E-08 46.9 -1.0 36 2-43 73-108 (111)
86 PF06379 RhaT: L-rhamnose-prot 94.7 0.26 5.7E-06 43.1 9.1 141 76-221 5-157 (344)
87 PRK02237 hypothetical protein; 94.3 0.38 8.3E-06 34.8 7.6 45 175-219 63-107 (109)
88 PF05977 MFS_3: Transmembrane 94.1 3.1 6.8E-05 39.1 15.7 40 176-215 351-390 (524)
89 KOG1444 Nucleotide-sugar trans 93.7 2.3 4.9E-05 37.0 12.6 120 94-219 28-151 (314)
90 KOG1443 Predicted integral mem 93.0 1.3 2.8E-05 38.3 9.9 123 98-221 36-160 (349)
91 PF02694 UPF0060: Uncharacteri 92.8 0.77 1.7E-05 33.2 7.1 45 175-219 61-105 (107)
92 KOG1581 UDP-galactose transpor 92.6 5.1 0.00011 34.7 12.9 128 89-222 25-160 (327)
93 KOG2766 Predicted membrane pro 92.2 0.014 3E-07 48.8 -2.7 138 74-219 14-152 (336)
94 COG5006 rhtA Threonine/homoser 91.3 8.2 0.00018 32.6 13.5 103 79-189 13-115 (292)
95 KOG3912 Predicted integral mem 89.3 0.69 1.5E-05 39.5 4.7 65 154-218 95-159 (372)
96 PRK10452 multidrug efflux syst 88.8 0.11 2.3E-06 38.8 -0.4 35 4-44 69-103 (120)
97 PRK09541 emrE multidrug efflux 88.4 0.11 2.3E-06 38.2 -0.6 34 4-43 69-102 (110)
98 COG1742 Uncharacterized conser 88.0 2.7 5.9E-05 30.2 6.2 45 175-219 62-106 (109)
99 PRK10650 multidrug efflux syst 87.6 0.14 3E-06 37.5 -0.5 33 4-42 74-106 (109)
100 KOG1442 GDP-fucose transporter 87.3 1 2.2E-05 38.4 4.4 111 105-219 59-176 (347)
101 PRK11431 multidrug efflux syst 87.3 0.16 3.5E-06 36.9 -0.3 34 4-43 68-101 (105)
102 COG2076 EmrE Membrane transpor 86.3 0.17 3.6E-06 36.7 -0.6 34 4-43 69-102 (106)
103 COG0387 ChaA Ca2+/H+ antiporte 84.2 14 0.0003 33.0 10.1 116 100-217 60-183 (368)
104 PRK02971 4-amino-4-deoxy-L-ara 84.0 0.28 6E-06 37.1 -0.4 35 3-43 85-121 (129)
105 KOG4831 Unnamed protein [Funct 82.0 2.5 5.4E-05 30.6 3.8 57 160-216 67-124 (125)
106 COG5070 VRG4 Nucleotide-sugar 81.8 15 0.00033 30.6 8.7 58 163-220 86-143 (309)
107 PF04342 DUF486: Protein of un 81.6 2.1 4.5E-05 30.9 3.3 31 185-215 76-106 (108)
108 PF07168 Ureide_permease: Urei 77.7 1.6 3.4E-05 37.7 2.0 131 83-216 1-145 (336)
109 COG3169 Uncharacterized protei 75.1 8.3 0.00018 27.5 4.7 33 185-217 83-115 (116)
110 PF06379 RhaT: L-rhamnose-prot 72.3 70 0.0015 28.4 11.1 174 28-217 137-340 (344)
111 PF15102 TMEM154: TMEM154 prot 63.7 9.5 0.00021 29.3 3.3 18 206-223 70-87 (146)
112 KOG1583 UDP-N-acetylglucosamin 63.6 7.2 0.00016 33.4 2.9 68 158-225 77-145 (330)
113 PRK13108 prolipoprotein diacyl 63.3 49 0.0011 30.7 8.4 24 197-220 254-277 (460)
114 TIGR00892 2A0113 monocarboxyla 62.4 1.2E+02 0.0027 27.5 11.4 8 164-171 357-364 (455)
115 TIGR02865 spore_II_E stage II 62.0 63 0.0014 32.1 9.5 36 1-42 19-54 (764)
116 PF03547 Mem_trans: Membrane t 61.8 1.2E+02 0.0025 27.0 12.9 11 152-162 70-80 (385)
117 PF08507 COPI_assoc: COPI asso 61.4 15 0.00032 27.9 4.1 16 201-216 89-104 (136)
118 PRK14397 membrane protein; Pro 58.0 1.1E+02 0.0024 25.4 11.6 29 69-97 39-67 (222)
119 COG2271 UhpC Sugar phosphate p 56.6 1.6E+02 0.0036 27.1 11.5 49 175-224 163-212 (448)
120 PRK11010 ampG muropeptide tran 54.8 1.8E+02 0.0039 26.9 14.1 53 165-217 345-401 (491)
121 PF04246 RseC_MucC: Positive r 52.1 14 0.0003 27.9 2.6 39 172-210 68-108 (135)
122 TIGR02840 spore_YtaF putative 50.7 15 0.00031 30.1 2.6 46 171-216 33-80 (206)
123 TIGR00881 2A0104 phosphoglycer 50.3 1.6E+02 0.0035 25.1 11.9 17 88-104 41-57 (379)
124 KOG0569 Permease of the major 50.1 2.2E+02 0.0048 26.6 10.9 76 148-223 376-457 (485)
125 COG3086 RseC Positive regulato 48.1 13 0.00029 28.5 1.9 24 169-192 72-95 (150)
126 TIGR00905 2A0302 transporter, 48.0 2.3E+02 0.0049 26.1 10.4 44 177-221 394-438 (473)
127 TIGR00910 2A0307_GadC glutamat 46.5 2.5E+02 0.0054 26.2 10.6 17 106-122 330-346 (507)
128 PF05297 Herpes_LMP1: Herpesvi 46.1 6.7 0.00015 33.6 0.0 10 78-87 107-116 (381)
129 PF02694 UPF0060: Uncharacteri 44.6 9.3 0.0002 27.7 0.5 33 6-44 71-103 (107)
130 PF03595 SLAC1: Voltage-depend 43.4 99 0.0021 26.8 7.0 75 29-125 7-89 (330)
131 PF07857 DUF1632: CEO family ( 42.9 62 0.0014 27.4 5.3 78 26-103 116-208 (254)
132 PRK02237 hypothetical protein; 41.5 11 0.00023 27.4 0.5 32 7-44 74-105 (109)
133 PF01102 Glycophorin_A: Glycop 40.9 18 0.0004 27.0 1.6 14 203-216 75-88 (122)
134 PRK03449 putative inner membra 40.6 2.3E+02 0.0049 24.8 8.6 34 176-210 228-261 (304)
135 PF04342 DUF486: Protein of un 39.9 10 0.00022 27.5 0.1 29 7-41 77-105 (108)
136 PF06123 CreD: Inner membrane 39.7 3.1E+02 0.0067 25.3 14.1 124 78-217 300-423 (430)
137 TIGR01167 LPXTG_anchor LPXTG-m 38.5 54 0.0012 17.9 3.1 16 198-213 11-26 (34)
138 PRK15049 L-asparagine permease 38.0 3.4E+02 0.0073 25.3 10.3 8 197-204 447-454 (499)
139 PF07444 Ycf66_N: Ycf66 protei 37.6 25 0.00055 24.4 1.8 27 196-222 4-30 (84)
140 PF15471 TMEM171: Transmembran 37.3 30 0.00065 29.5 2.5 27 199-225 161-187 (319)
141 PF08693 SKG6: Transmembrane a 36.8 35 0.00077 20.1 2.0 17 204-220 22-38 (40)
142 PF15099 PIRT: Phosphoinositid 35.4 19 0.0004 26.9 0.9 16 146-161 58-73 (129)
143 PRK10599 calcium/sodium:proton 35.1 3.4E+02 0.0073 24.4 11.4 43 84-126 46-90 (366)
144 PRK05122 major facilitator sup 34.6 3.1E+02 0.0068 23.9 14.5 33 185-217 355-387 (399)
145 PF03348 Serinc: Serine incorp 34.6 3.7E+02 0.008 24.7 12.5 23 196-218 282-304 (429)
146 PRK11902 ampG muropeptide tran 34.1 3.3E+02 0.0072 24.0 14.0 15 201-215 372-386 (402)
147 PF12832 MFS_1_like: MFS_1 lik 32.6 1.4E+02 0.003 20.0 4.9 48 144-191 7-54 (77)
148 PF13980 UPF0370: Uncharacteri 32.6 47 0.001 21.2 2.2 15 205-219 11-25 (63)
149 TIGR00893 2A0114 d-galactonate 32.3 3.2E+02 0.0069 23.3 15.1 13 92-104 44-56 (399)
150 PRK10862 SoxR reducing system 32.0 22 0.00049 27.6 0.9 18 174-191 77-94 (154)
151 PF11295 DUF3096: Protein of u 31.7 61 0.0013 18.9 2.4 33 182-214 1-33 (39)
152 TIGR03810 arg_ornith_anti argi 31.6 4.1E+02 0.0089 24.4 10.6 41 180-221 392-433 (468)
153 COG1742 Uncharacterized conser 30.6 36 0.00079 24.6 1.7 32 7-44 73-104 (109)
154 PHA03049 IMV membrane protein; 30.3 54 0.0012 21.5 2.3 19 201-219 6-24 (68)
155 TIGR00803 nst UDP-galactose tr 30.0 37 0.00081 27.6 2.0 46 174-219 7-52 (222)
156 PRK07946 putative monovalent c 29.8 2.8E+02 0.006 21.9 10.0 22 145-166 29-50 (163)
157 PRK06638 NADH:ubiquinone oxido 29.7 3E+02 0.0065 22.2 12.0 32 186-217 133-166 (198)
158 PF05961 Chordopox_A13L: Chord 29.4 53 0.0011 21.7 2.1 22 200-221 5-26 (68)
159 PRK13664 hypothetical protein; 28.7 67 0.0015 20.4 2.5 19 202-220 9-27 (62)
160 COG4147 DhlC Predicted symport 28.2 3.2E+02 0.007 25.6 7.7 66 157-222 434-511 (529)
161 PF11044 TMEMspv1-c74-12: Plec 28.0 33 0.00071 20.6 0.9 16 198-213 3-18 (49)
162 TIGR00939 2a57 Equilibrative N 27.4 4.9E+02 0.011 23.9 10.6 32 154-185 119-150 (437)
163 PF04277 OAD_gamma: Oxaloaceta 27.3 50 0.0011 22.1 1.9 8 202-209 9-16 (79)
164 PRK11469 hypothetical protein; 27.3 55 0.0012 26.3 2.5 42 175-216 44-86 (188)
165 PRK11715 inner membrane protei 27.2 5E+02 0.011 24.0 13.8 46 78-127 306-351 (436)
166 PF13038 DUF3899: Domain of un 26.9 31 0.00067 24.0 0.8 20 198-217 3-22 (92)
167 PF14851 FAM176: FAM176 family 26.3 1.8E+02 0.004 22.6 5.1 28 160-187 8-35 (153)
168 PF05297 Herpes_LMP1: Herpesvi 26.2 23 0.0005 30.5 0.1 27 155-181 118-144 (381)
169 TIGR01299 synapt_SV2 synaptic 26.1 6.6E+02 0.014 25.0 15.8 41 85-126 603-643 (742)
170 PF06781 UPF0233: Uncharacteri 26.1 1.7E+02 0.0037 20.4 4.4 55 142-217 30-85 (87)
171 PRK12437 prolipoprotein diacyl 26.0 2.7E+02 0.0059 23.7 6.6 46 175-220 208-258 (269)
172 PLN00028 nitrate transmembrane 25.8 5.2E+02 0.011 23.6 11.1 15 202-216 417-431 (476)
173 PRK09579 multidrug efflux prot 25.5 2.5E+02 0.0055 29.0 7.3 32 183-215 882-913 (1017)
174 PRK11383 hypothetical protein; 25.5 3.1E+02 0.0068 21.0 11.3 102 106-215 10-121 (145)
175 PF12606 RELT: Tumour necrosis 25.3 57 0.0012 20.2 1.7 14 206-219 12-25 (50)
176 PRK09577 multidrug efflux prot 25.3 2.5E+02 0.0055 29.0 7.3 35 180-215 900-934 (1032)
177 PF13127 DUF3955: Protein of u 24.9 2E+02 0.0044 18.6 5.6 26 77-102 5-30 (63)
178 TIGR00836 amt ammonium transpo 24.7 5.4E+02 0.012 23.5 10.3 63 147-209 282-362 (403)
179 COG4657 RnfA Predicted NADH:ub 24.3 69 0.0015 25.2 2.3 23 76-98 101-123 (193)
180 PF10639 UPF0546: Uncharacteri 24.2 43 0.00094 24.6 1.2 14 29-42 99-112 (113)
181 PTZ00207 hypothetical protein; 24.1 6.5E+02 0.014 24.2 13.8 34 91-125 75-108 (591)
182 KOG1330 Sugar transporter/spin 23.8 6.1E+02 0.013 23.8 8.7 56 73-128 283-340 (493)
183 PRK14789 lipoprotein signal pe 23.8 1.2E+02 0.0025 24.6 3.7 9 190-198 110-118 (191)
184 PF15345 TMEM51: Transmembrane 23.2 44 0.00096 27.8 1.2 22 203-224 67-88 (233)
185 KOG3626 Organic anion transpor 23.2 1.1E+02 0.0023 30.3 4.0 18 177-194 281-298 (735)
186 PF11381 DUF3185: Protein of u 22.8 40 0.00087 21.7 0.7 17 28-44 1-17 (59)
187 PF07214 DUF1418: Protein of u 22.7 1.1E+02 0.0025 21.7 3.0 16 203-218 51-66 (96)
188 PF02659 DUF204: Domain of unk 22.4 1.2E+02 0.0027 19.5 3.1 38 171-208 26-63 (67)
189 PF09945 DUF2177: Predicted me 22.0 3.5E+02 0.0076 20.3 6.5 45 80-126 78-122 (128)
190 PRK10921 twin-arginine protein 21.9 4.9E+02 0.011 22.0 7.6 19 78-96 74-92 (258)
191 TIGR00966 3a0501s07 protein-ex 21.7 3.7E+02 0.0079 22.5 6.5 39 171-209 123-161 (246)
192 COG1971 Predicted membrane pro 21.6 1.1E+02 0.0023 24.8 3.0 42 175-216 44-86 (190)
193 PF15048 OSTbeta: Organic solu 21.1 1.2E+02 0.0025 22.7 2.9 11 190-200 25-35 (125)
194 CHL00196 psbY photosystem II p 20.9 1.8E+02 0.004 16.6 3.1 20 78-97 6-25 (36)
195 COG4736 CcoQ Cbb3-type cytochr 20.7 64 0.0014 20.8 1.3 22 201-222 14-35 (60)
196 PF00909 Ammonium_transp: Ammo 20.4 6.4E+02 0.014 22.7 12.3 64 147-210 277-359 (399)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=211.11 Aligned_cols=214 Identities=28% Similarity=0.594 Sum_probs=158.0
Q ss_pred CchHHHHHHHHHhh------cccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhh-hcccCC-CCC
Q 025172 1 MVPVITFVIALPFG------LETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAIN-VMHMHP-TRK 72 (256)
Q Consensus 1 ~~P~~~~l~~~~~~------~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 72 (256)
+.|+++++++++++ +||++++ |++|++++++|+.++...+++....++ +++..+ ....++ ...
T Consensus 113 ~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~ 183 (358)
T PLN00411 113 ITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVAS---SPPYLNFRQLSPPLSSS 183 (358)
T ss_pred hhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccccccc---ccccccccccccccCCC
Confidence 47999999999994 6666666 699999999999987644433110000 000000 000000 112
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHH
Q 025172 73 TERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAG 151 (256)
Q Consensus 73 ~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g 151 (256)
..++..|+++++.++++||+|.+++|+..+++++....+++++.++++...+.....++. ...+..........++|.+
T Consensus 184 ~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~ 263 (358)
T PLN00411 184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMA 263 (358)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHH
Confidence 234567999999999999999999999988887766777888888877776666655432 2223221222345577888
Q ss_pred HHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172 152 IVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 152 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++..+.++||.+
T Consensus 264 i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 264 II-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 75 5689999999999999999999999999999999999999999999999999999999999887665543
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=9.7e-24 Score=183.04 Aligned_cols=191 Identities=19% Similarity=0.176 Sum_probs=150.9
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++.+++++++|||++.++ +++++++++|+.++.. .+. + ..+....|+
T Consensus 95 ~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~---------------------~-~~~~~~~G~ 145 (299)
T PRK11453 95 AQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSL---------------------N-GQHVAMLGF 145 (299)
T ss_pred hHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccC---------------------C-CcchhHHHH
Confidence 4699999999999999999996 9999999999998862 111 1 112224799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHhcCCC---CcccccchhHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPC--KYSSTAILSLFGAIQAAILCLATNRNH---SAWSFKGKIEIISVLYAGIVGS 155 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~g~~~~ 155 (256)
++++.++++|+.|.++.|+..++.++ ......+.+..+.+.........+... ..+...+...|..++|.|++++
T Consensus 146 ~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t 225 (299)
T PRK11453 146 MLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVAT 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998765432 233445555555554444443333211 0111123456999999999999
Q ss_pred HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
+++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+++..+.++
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999998877654
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.90 E-value=5e-23 Score=178.23 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=142.6
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++.+++++++|||+++++ ++|++++++|+.++.. .+..... +. . ..+..+...|+
T Consensus 100 ~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~~~----~~--~--------~~~~~~~~~G~ 158 (295)
T PRK11689 100 LWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGLSL----AE--L--------INNIASNPLSY 158 (295)
T ss_pred HhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccchh----hh--h--------hhccccChHHH
Confidence 3699999999999999999995 9999999999999863 2110000 00 0 00011223699
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
+++++++++||.|.++.|+..++. ++.... ...+++.+.+.....+.. ... .+...|..+++.++ +++++|.
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~--~~~-~~~~~~~~l~~~~~-~t~~~~~ 230 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQP--AMV-FSLPAIIKLLLAAA-AMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCc--ccc-CCHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999987765 445432 223333333333332211 111 13345777778775 7899999
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++....++
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 999999999999999999999999999999999999999999999999999988865443
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=6.9e-23 Score=177.13 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=151.3
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++ +|||+++++ ++|++++++|+.++.. ++. .+....|+
T Consensus 105 ~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~------------------------~~~~~~G~ 152 (292)
T PRK11272 105 TVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGN------------------------LSGNPWGA 152 (292)
T ss_pred HHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Ccc------------------------cccchHHH
Confidence 479999999986 699999996 9999999999988752 111 01123799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
++.++++++||.|.+..|+..++ ++...+.+++..+++.+.+.....+.... ...+...|..+++.++++++++|.
T Consensus 153 l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~ 228 (292)
T PRK11272 153 ILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAIS 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654 23556778888888877777654432211 112345688899999999999999
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988866544
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.89 E-value=3.6e-22 Score=169.47 Aligned_cols=177 Identities=17% Similarity=0.196 Sum_probs=148.5
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ ++|++++++|++++.. ++. .+....|+
T Consensus 82 ~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~------------------------~~~~~~G~ 130 (260)
T TIGR00950 82 LAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN------------------------LSINPAGL 130 (260)
T ss_pred hhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc------------------------ccccHHHH
Confidence 4799999999999999999995 9999999999998752 211 11234899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
+++++++++|+.+.++.|+..++.+ +......+++.++++++.+.....++.. .. +...|..+++.+++++.++|
T Consensus 131 ~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 131 LLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP---QA-LSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC---Cc-chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 2344555778888888877776544321 11 34567788999999999999
Q ss_pred HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Q 025172 160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGL 212 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi 212 (256)
.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.88 E-value=3.2e-22 Score=173.77 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=145.2
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ +.+++++++|+.+.. .+ +.+....|+
T Consensus 100 ~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~------------------------~~~~~~~G~ 147 (302)
T TIGR00817 100 MEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DT------------------------ELSFNWAGF 147 (302)
T ss_pred cchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CC------------------------cccccHHHH
Confidence 4799999999999999999995 999999999997653 11 111224799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc---ccc-----cchhHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGK--RYPCKYSSTAILSLFGAIQAAILCLATNRNHSA---WSF-----KGKIEIISVLYA 150 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-----~~~~~~~~ll~~ 150 (256)
++.++++++|+.|.++.|+..+ ++ ++...+.+++..+++.+.+.....+..... +.. .....+...++.
T Consensus 148 ~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (302)
T TIGR00817 148 LSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVA 226 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHH
Confidence 9999999999999999999887 55 678999999999999988888765531100 000 000112112233
Q ss_pred HHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 151 GIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 151 g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+..+....+.++++++++.+|++++++.+++|++++++|++++||+++..+++|+++++.|++++.+.|++
T Consensus 227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 33233333345668999999999999999999999999999999999999999999999999999876543
No 7
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=1.2e-20 Score=163.94 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=159.1
Q ss_pred hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172 3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA 82 (256)
Q Consensus 3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 82 (256)
=+++++++++++|+|+++.+ ++|+++++.|+.+++..|....+. +.+..+...|+++
T Consensus 116 i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~~~-----------------~~~~~~~i~GDll 172 (334)
T PF06027_consen 116 IPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSGSD-----------------SSSGSNPILGDLL 172 (334)
T ss_pred hHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccccccc-----------------CCCCCccchhHHH
Confidence 36899999999999999995 999999999999987654322110 2234456799999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172 83 LTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAGIVGSGLCYVG 161 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~~ 161 (256)
+++|+++||+++++.++..++. +...+..+..+++.++..+...+.+.. ..... .......++....++.+.-|.+
T Consensus 173 ~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l 249 (334)
T PF06027_consen 173 ALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGLLVGYALCLFLFYSL 249 (334)
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 668888888999999988887776653 22221 2223333443344477788888
Q ss_pred HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccccc
Q 025172 162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQNC 226 (256)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~~ 226 (256)
....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|++++...+++++++.
T Consensus 250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~ 314 (334)
T PF06027_consen 250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR 314 (334)
T ss_pred HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence 89999999999999999999999999999999999999999999999999999988776554433
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.85 E-value=2.9e-20 Score=160.87 Aligned_cols=179 Identities=14% Similarity=0.023 Sum_probs=136.0
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
.|+++++++ +|++.. ..++.++++|+.++.. .+. + .......|++
T Consensus 107 ~Pi~~~ll~----~~~~~~--------~~~~~i~~~Gv~li~~-~~~---------------------~-~~~~~~~G~l 151 (293)
T PRK10532 107 GPLAVALFS----SRRPVD--------FVWVVLAVLGLWFLLP-LGQ---------------------D-VSHVDLTGAA 151 (293)
T ss_pred HHHHHHHHh----cCChHH--------HHHHHHHHHHHheeee-cCC---------------------C-cccCChHHHH
Confidence 588887765 344332 4556788999988752 111 1 0112247999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVG 161 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~ 161 (256)
+.++++++||.|.+..|+..++. ++... .+...++++.+.+.....+.. .. .+...|..+++.|+++++++|.+
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-AL---WHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-cc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998775 44544 455666666666655543321 11 12234666789999999999999
Q ss_pred HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
|++++++.++++++++.+++|+++.+++++++||+++..+++|+++|++|++...+..+|
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999888765544
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=1.8e-20 Score=161.16 Aligned_cols=180 Identities=18% Similarity=0.143 Sum_probs=134.0
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ ++|+++++.|+.++.. ++. . .....|+
T Consensus 98 ~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~~---------------------~---~~~~~g~ 146 (281)
T TIGR03340 98 SSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SRF---------------------A---QHRRKAY 146 (281)
T ss_pred hhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-ccc---------------------c---ccchhHH
Confidence 3699999999999999999996 9999999999998752 111 0 1112688
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchh---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKY---SSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
.++++++++|++|.+..|+..++.++.. ....+.+...++.+.......+.. ... .....+..+++.+.+++++
T Consensus 147 ~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 147 AWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGG 223 (281)
T ss_pred HHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887654432211 122223322222222222211211 111 1223455667888889999
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhh
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYI 214 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l 214 (256)
+|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+++
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999999999999875
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.82 E-value=1.4e-19 Score=160.10 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=146.6
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ ++++++++.|+++... .+ .+....|+
T Consensus 149 ~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~~-------------------------~~~~~~G~ 196 (350)
T PTZ00343 149 AEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-KE-------------------------LHFTWLAF 196 (350)
T ss_pred hhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-cc-------------------------chhHHHHH
Confidence 4799999999999999999995 9999999999999862 11 11234799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC------chhHHHHHHHHHHHHHHHHHHHHhcCCC--Cccc----ccchhHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYP------CKYSSTAILSLFGAIQAAILCLATNRNH--SAWS----FKGKIEIISVL 148 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~ll 148 (256)
+++++++++|+.+.++.|+..++.. ++.....+....+++++++.....+... ..+. ......+..++
T Consensus 197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l 276 (350)
T PTZ00343 197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIII 276 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHH
Confidence 9999999999999999999876531 3455666668889988888877554310 0000 00011122334
Q ss_pred HHHHHHHHHHHHHHHH----HHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 149 YAGIVGSGLCYVGLTW----CVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 149 ~~g~~~~~~~~~~~~~----a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
+ .++.+++.|.+|+. ++++++|.+.++..+++|+++++++++++||+++..+++|+++++.|++++.+.
T Consensus 277 ~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 277 F-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 4 45577899999995 999999999999999999999999999999999999999999999999998765
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.81 E-value=1.4e-19 Score=156.73 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ ++|++++++|+.++.. .. + . . .
T Consensus 108 ~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~-~~----------------------~-~-~-----~ 151 (296)
T PRK15430 108 INPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLW-TF----------------------G-S-L-----P 151 (296)
T ss_pred HHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHH-Hc----------------------C-C-c-----c
Confidence 4799999999999999999996 9999999999998751 11 0 0 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
+++++++++||.|.+..|+..++. .+....+.+.+..+....... .......+.......+..+++.|+ .+.++|
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~ 227 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLLLIAAGI-VTTVPL 227 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHHHHHHHH-HHHHHH
Confidence 468889999999999998875421 122333344444443332211 111111111111112334444555 688999
Q ss_pred HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+.+...
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888777654
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.76 E-value=3.2e-17 Score=140.44 Aligned_cols=182 Identities=22% Similarity=0.344 Sum_probs=141.6
Q ss_pred CchHHHHHHHH-HhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHH
Q 025172 1 MVPVITFVIAL-PFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFG 79 (256)
Q Consensus 1 ~~P~~~~l~~~-~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 79 (256)
+.|+++.++++ ++++||+++++ +.++++++.|++++...+.. .... ...|
T Consensus 105 ~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~----------------------~~~~-~~~g 155 (292)
T COG0697 105 LLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGG----------------------GGIL-SLLG 155 (292)
T ss_pred HHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCc----------------------chhH-HHHH
Confidence 36999999997 66799999995 99999999999998731111 0000 4589
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172 80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTA-ILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 158 (256)
+++.+.++++|+.+.+..|+.. +. ++..... +... +.............+ .......+..+.+.|+++++++
T Consensus 156 ~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 156 LLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL-LALLLLLLFFLSGFG----APILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH-HHHHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 43 4344444 3333 222222222221111 1123346888899999999999
Q ss_pred HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
+.+|++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988766
No 13
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=9.6e-17 Score=137.56 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=158.0
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
+.+||.+++.++..||+++. |++++++++.|+++++.++..+.+ +....+...|++
T Consensus 195 Ss~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~~------------------~~~a~~~llG~l 250 (416)
T KOG2765|consen 195 SSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQNS------------------DLPASRPLLGNL 250 (416)
T ss_pred chHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccccc------------------cCCccchhHHHH
Confidence 56899999999999999999 799999999999999865543211 223345579999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhH---HHHHHHHHHHHHHHHHHHHhcC-CCCcccccchhHHHHHHHHHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRYPCKYS---STAILSLFGAIQAAILCLATNR-NHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
++++|++.||.|.++.|+...+...... +-.+..++..+++++..++... ..+.+.+++..+...+++.+++++++
T Consensus 251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvv 330 (416)
T KOG2765|consen 251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVV 330 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHH
Confidence 9999999999999999987765422233 3344444555666655544332 22345555666788888899999999
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+-++|.+|.-..+|..+++-+.++...+++.+.++-+.++++.+++|.+.|++|.++.++..+.
T Consensus 331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876543
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.72 E-value=5.2e-18 Score=139.25 Aligned_cols=197 Identities=20% Similarity=0.180 Sum_probs=155.3
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
++|+||.+++|.++||+.+... .++..+.+.|+++++ .++.+.. .+++..+ ++..+....|.
T Consensus 132 ssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv--RPpFlFG-----~~t~g~~-----~s~~~~~~~gt 193 (346)
T KOG4510|consen 132 SSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV--RPPFLFG-----DTTEGED-----SSQVEYDIPGT 193 (346)
T ss_pred cChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe--cCCcccC-----CCccccc-----cccccccCCch
Confidence 4799999999999999999997 999999999999997 4444332 1111110 11123344788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
..++.+++..|...++.|++.|+. +.+..+.|..+++++..++.....+. . +++ +...+|+.++.+|+ .+++++.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig~-~-~lP-~cgkdr~l~~~lGv-fgfigQI 268 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIGA-V-QLP-HCGKDRWLFVNLGV-FGFIGQI 268 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhccc-e-ecC-ccccceEEEEEehh-hhhHHHH
Confidence 889999999999999999998885 65666777778888877777655542 1 222 24567888888898 5679999
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
+.+.++|+=.+..++++.+.+.+++.++.+++|||.+++++|+|+++++.+.+....+|.
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988776655443
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=5.3e-16 Score=113.90 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172 79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 158 (256)
..+++++++++++...++.|-..++. +|...++.+.++..+++..+.+..++...... .+...|..+...|+ +++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~-~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGE-IGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecccc-cCcceehhhhHHHH-HHHHH
Confidence 45889999999999999999888875 67888999999999998888887764321111 14455888888885 89999
Q ss_pred HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
+.+|+++++..+++++..+..+.|+++++++++++||++|..+++|+.+|++|.++..+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999877653
No 16
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.63 E-value=1.2e-14 Score=126.25 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=155.3
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
.|+++++++.+++|+|.++++ +.++++..+|+++....+..... +.+.....+..|++
T Consensus 100 ~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~~----------------~~~~~~~~~~~G~~ 157 (303)
T PF08449_consen 100 KPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSSS----------------SSNSSSFSSALGII 157 (303)
T ss_pred HHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHheeeeccccccc----------------ccccccccchhHHH
Confidence 489999999999999999995 99999999999998754432111 00111222335999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHH--hcCCCCccc--ccchhHHHHHHHHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLA--TNRNHSAWS--FKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~ll~~g~~~~~ 156 (256)
+++++.++.|...+++++..+++. ++....++...++.++.++.... .++..+... ...+..+..++...+ +..
T Consensus 158 ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~ 236 (303)
T PF08449_consen 158 LLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGA 236 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHH
Confidence 999999999999999999887654 67889999999999988888776 332211111 112222334444443 677
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
+++.+.++..++.++...+++..+.-+++++++++++++++++.+|+|.++++.|+.++.+.|+|+
T Consensus 237 ~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 237 LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 888888899999999999999999999999999999999999999999999999999999887764
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.61 E-value=1.1e-14 Score=119.03 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=133.2
Q ss_pred eehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 025172 29 VVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKY 108 (256)
Q Consensus 29 ~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~ 108 (256)
++.+.+++.|+.++. ..+++.+ +.| ..|..+++.++.||+.|.+..+|..+.. +.-
T Consensus 122 ~vwvaLAvlGi~lL~-p~~~~~~--------------~lD--------p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~ 177 (292)
T COG5006 122 FVWVALAVLGIWLLL-PLGQSVW--------------SLD--------PVGVALALGAGACWALYIVLGQRAGRAE-HGT 177 (292)
T ss_pred HHHHHHHHHHHHhhe-eccCCcC--------------cCC--------HHHHHHHHHHhHHHHHHHHHcchhcccC-CCc
Confidence 556677888888876 2332111 122 3999999999999999999999998754 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHH
Q 025172 109 SSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMF 188 (256)
Q Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll 188 (256)
.-+..-+.+++++.+++...... ..+.++.-...-+..+++++++.|.+-..++++.+....+.+++++|.++.+.
T Consensus 178 ~g~a~gm~vAaviv~Pig~~~ag----~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~ 253 (292)
T COG5006 178 AGVAVGMLVAALIVLPIGAAQAG----PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALS 253 (292)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcc----hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHH
Confidence 77888899999999998874332 12223444666678899999999999999999999999999999999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 189 DIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 189 ~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
+++++||+++..||.|++.|+.+..-..+.-+|+
T Consensus 254 G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 254 GLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999999999999999999887666654443
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.60 E-value=1.7e-14 Score=124.59 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=134.2
Q ss_pred chHHHHHHHHHhhcccccccccCCcce----eehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAK----VVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWT 77 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k----~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (256)
.|++.++++.+++|||.+.+ | ++|++++++|++++...++.... ..+..+..
T Consensus 96 ~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~------------------~~~~~~~~ 151 (290)
T TIGR00776 96 QLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAG------------------IKSEFNFK 151 (290)
T ss_pred HHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccc------------------cccccchh
Confidence 46678889999999999888 7 88899999999988643221000 00002235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH---HHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSL---FGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVG 154 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 154 (256)
.|+++.++++++|+.|.+..|+.. + ++...++.++. +++....... . .. .++. ....+. .+..|++
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~~--~~~~~~-~~~~Gi~- 220 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAFG--V-DGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPLK--KYAILL-NILPGLM- 220 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--C-CcceehhHHHHHHHHHHHHHHHHH--h-cc-cchH--HHHHHH-HHHHHHH-
Confidence 799999999999999999999763 3 56777554444 3333222211 1 11 1111 222233 3448887
Q ss_pred HHHHHHHHHHHHh-ccCccchhhchhhHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHHhhheec
Q 025172 155 SGLCYVGLTWCVK-KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSL----LGSITVIIGLYILLWG 218 (256)
Q Consensus 155 ~~~~~~~~~~a~~-~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~----iG~~lii~gi~l~~~~ 218 (256)
..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++ +|+++++.|+.+....
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 6999999999999 99999999999999999999999999999999999 9999999999887543
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.60 E-value=7.2e-15 Score=110.35 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025172 88 LLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVK 167 (256)
Q Consensus 88 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~ 167 (256)
++||.+.+..|+..++. ++...+++++..+++ +.+.....+... ....+..++..+++.+++++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 47899999999999985 779999999999998 655555544322 12224456777888898888999999999999
Q ss_pred ccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 168 KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 168 ~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
+.+++.++.+.+++|+++.+++++++||+++..+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.59 E-value=7.6e-15 Score=124.52 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|+++++++++++|||+++++ +++++++++|+.++.. .+ + + . .
T Consensus 105 ~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~-~~----------------------~-~-~-----~ 148 (256)
T TIGR00688 105 INPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIV-LK----------------------G-S-L-----P 148 (256)
T ss_pred HHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHH-Hc----------------------C-C-c-----h
Confidence 3799999999999999999996 9999999999988752 10 0 0 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
++++.++++|+.|.+..|+..++ +. ...... ............. ..............+|..+++.|+. +.++|.
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~ 223 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLE-TLSLMPVAIYYLL-QTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHH-HHHHHHHHHHHHH-HhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence 35788999999999999987643 22 222211 1111111111111 1111111111122368888888875 889999
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHH
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL 192 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~ 192 (256)
+|++++++.++++++.+.|++|+++.++++++
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999764
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=119.85 Aligned_cols=178 Identities=10% Similarity=0.069 Sum_probs=140.9
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
.|++.++++.+|+|||+++.| +++++++.+|+....+..+ ++ . .
T Consensus 108 nPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g-~l------------------------p-----w 151 (293)
T COG2962 108 NPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLG-SL------------------------P-----W 151 (293)
T ss_pred HHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcC-CC------------------------c-----H
Confidence 599999999999999999996 9999999999998763222 11 1 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVG 161 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~ 161 (256)
..+.-++.|+.|..+-|+.. .++.+-....+..-....+...+..+...+.........+..++..|. .|+++..+
T Consensus 152 val~la~sf~~Ygl~RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~l 227 (293)
T COG2962 152 VALALALSFGLYGLLRKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLL 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHH
Confidence 46677899999999876553 244666666666666655555554443321011124456888888888 77899999
Q ss_pred HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 162 LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
|..+-++++-+..+.++|.+|..-.+++++++||+++..++...++|.+|++++.+..
T Consensus 228 f~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 228 FAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997654
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.45 E-value=2.7e-13 Score=111.03 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=144.5
Q ss_pred HHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHH
Q 025172 5 ITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALT 84 (256)
Q Consensus 5 ~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l 84 (256)
.+.+++|+|+|.|.++. |+.|+++|++|+.++++.|-...+ ..+..+-.+|+++++
T Consensus 117 ~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~agd------------------~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAGD------------------RAGGSNPVKGDFLVI 172 (336)
T ss_pred HHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeecccc------------------ccCCCCCccCcEEEE
Confidence 35678999999999888 699999999999999865543322 333445569999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025172 85 VGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTW 164 (256)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~ 164 (256)
+++-+||+.++....+.|+. +.........++|+++..+- ++.+... ...++........+. ..++.++-|.+...
T Consensus 173 ~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w~~~i~~yl~-f~L~MFllYsl~pi 248 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHWDSAIFLYLR-FALTMFLLYSLAPI 248 (336)
T ss_pred ecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEeehHHHHHHHH-HHHHHHHHHHhhHH
Confidence 99999999999999999985 77888999999999999888 4444321 112222222333333 44567777888888
Q ss_pred HHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 165 CVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 165 a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
.+|..+++..++-....-.|++++ -.||-+.+|...+..+.+..|.+++..++
T Consensus 249 l~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 249 LIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred heecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 899999999999999999999988 66888899999999999999998885443
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3.6e-13 Score=109.06 Aligned_cols=192 Identities=16% Similarity=0.169 Sum_probs=151.2
Q ss_pred hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172 3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA 82 (256)
Q Consensus 3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 82 (256)
|+-++++++++.+++.+|+ |..+++..++|+++.. ++..-.. +........|.++
T Consensus 122 PIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~------------------g~e~~t~g~GElL 176 (337)
T KOG1580|consen 122 PIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG------------------GAEDKTFGFGELL 176 (337)
T ss_pred CcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC------------------CCcccccchHHHH
Confidence 6677899999999999999 5999999999999986 4432111 2233455699999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCC--cccccchhHHHHHHHHHHHHHHHHH
Q 025172 83 LTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHS--AWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
.++|-..-+.....+.+..+.+. ....++++..+.+.+.+....++.++..+ .+....+..|+-+..+++ ++.+++
T Consensus 177 L~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ 255 (337)
T KOG1580|consen 177 LILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQ 255 (337)
T ss_pred HHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhh
Confidence 99999999999999888777543 44667888888888877766666554222 111122334666777777 889999
Q ss_pred HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
++.+.-+...+|..-+++....-.|+++.++++++++++..||+|..++..|+..-....+
T Consensus 256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999877654333
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.38 E-value=2.2e-12 Score=111.17 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=147.4
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.|++++++++++.+|+.+++. +..++..+.|+.+... .+. .....|.
T Consensus 118 ~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~-~e~-------------------------~fn~~G~ 165 (316)
T KOG1441|consen 118 LMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV-TEL-------------------------SFNLFGF 165 (316)
T ss_pred hcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee-ccc-------------------------cccHHHH
Confidence 5799999999999999999995 8899999999988763 221 2234999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cC-CchhHHHHHHHHHHHHHHH-HHHHHhcCCCC---cccccchhHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGK--RY-PCKYSSTAILSLFGAIQAA-ILCLATNRNHS---AWSFKGKIEIISVLYAGIV 153 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~--~~-~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~ll~~g~~ 153 (256)
+.++++.+..+...++.|+..+ +. -++++...++.-++++.++ |.....+++.. ... ........+++.. +
T Consensus 166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s-v 243 (316)
T KOG1441|consen 166 ISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA-PWFVTFLILLLNS-V 243 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecc-ccchhhHHHHHHH-H
Confidence 9999999999999999999884 21 2678889999999999888 66665554322 110 0111122222333 3
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
+...-....+..+++++|.+.++.+.+.-++.+..++++|++++++.+..|+++.++|+++|.+.|.++++
T Consensus 244 ~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 244 LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44444455568999999999999999999999999999999999999999999999999999988766543
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.35 E-value=2.6e-11 Score=105.07 Aligned_cols=137 Identities=14% Similarity=0.113 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccchhHHHHHHHHHHH
Q 025172 76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS--FKGKIEIISVLYAGIV 153 (256)
Q Consensus 76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g~~ 153 (256)
...|.+++++++++|+...+..|.. .+. ++..+.++++.++.+.+.+.....++. .... ..+...+. ....+.+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQW-SYLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHcCHHHHH-HHHHHHH
Confidence 3589999999999999999999865 454 679999999999988776665443321 1110 01122232 3335666
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
..+..+.++++++++.++..++++.++.|+++.+++++++||+++..+++|+++.++|+.+..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999999999999999999988765
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.31 E-value=5.2e-11 Score=100.99 Aligned_cols=136 Identities=12% Similarity=0.137 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCC---Cccc-ccchhHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNH---SAWS-FKGKIEIISVLYAGIV 153 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~~g~~ 153 (256)
.|.+++++++++|+...+..|.. .+. ++..+.+++++++++++.+......+.. ...+ ......+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence 58899999999999999999984 454 7799999999999888766654433210 0111 101112344555565
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
..++.+.+++++++++++..++++.++.|+++.+++++++||+++..+++|.++.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999987664
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.28 E-value=1.4e-10 Score=90.40 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc------CCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc---cccc------chhH
Q 025172 79 GTIALTVGTLLWASWFPIQSYIGKR------YPCKYSSTAILSLFGAIQAAILCLATNRNHSA---WSFK------GKIE 143 (256)
Q Consensus 79 G~ll~l~s~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~------~~~~ 143 (256)
|.++++++.++.|.+.++.|+..++ ..++.....+....+.+++.+..+..++.... .... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987776 33789999999999999999998887763211 1000 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
+..++..|+ ....-....+..+++.+|...++...+..+..+++++++++|+++..+++|.++.++|.++|.|
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 555555665 4456666777999999999999999999999999999999999999999999999999998865
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.25 E-value=3.5e-10 Score=97.32 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172 80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
.++.++++++||...+..|+..++. ++ ..++.+..+++++.+........ ..+..... .+...+..+.......+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PD--FLWWALLAHSVLLTPYGLWYLAQ-VGWSRLPA-TFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhccc-CCCCCcch-hhHHHHHHHHHHHHHHH
Confidence 4678999999999999999877663 33 34666666666666655442111 12222122 23334444555778899
Q ss_pred HHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 160 VGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.++++.|+++....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887653
No 29
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.19 E-value=6.7e-10 Score=98.49 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172 77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 156 (256)
..-.+.+++.-++|+.+.++.|...+...++....++++.+++++++++.+..++.. ..+.....+|..+...|+++ .
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-H
Confidence 366788999999999999999999988778899999999999999988877654311 11111233566777778766 5
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHH------hcccchhhHHHHHHHHHHHHhhheec
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL------LHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~------~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
+.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+....
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 667789999999999999999999999999999999 69999999999999999999877643
No 30
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.16 E-value=1.2e-09 Score=82.63 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
.|.++.+++.++-+...++.|+..++.++ ...... . ....... . . ....++.|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~--~----~~~~~~~--~----~--------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD--F----IAALLAF--G----L--------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH--H----HHHHHHH--h----c--------cHHHHHHHHHHHHH
Confidence 47889999999999999999988877532 221111 0 0000010 0 0 11246788999999
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIP--LLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l--~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+|.+|++++++.+.+.+..+....+++..+.++. ++||++++.+++|+++|++|+++..+.++|
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999888888885 899999999999999999999998765443
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.09 E-value=3.3e-09 Score=89.24 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172 3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA 82 (256)
Q Consensus 3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 82 (256)
-++|++++++++|+|++.+| |.++++.+.|++++.......-+.. +....+.+....+...|.++
T Consensus 54 Il~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~lv~~~~~~~~~~~---------~~~~~~~~~~~~~~~~G~~~ 118 (244)
T PF04142_consen 54 ILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVLVQLSSSQSSDNS---------SSSSVHHDASNQNPLLGLLA 118 (244)
T ss_pred HHHHHHHHHHHHHcccchhh------HHHHHHHHHHHheeecCCccccccc---------cccccccccccchhHhHHHH
Confidence 36899999999999999996 9999999999999863221110000 00000001123445799999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 83 LTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRN-HSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
.++++++-+...++.++..|+.. +.+..+......+.++.++.....+.. .....+... +-...+.-++..+++=.
T Consensus 119 vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G--~~~~~~~~i~~~a~gGl 196 (244)
T PF04142_consen 119 VLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHG--YSWWVWIVIFLQAIGGL 196 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhh--cchHHHHHHHHHHHhhH
Confidence 99999999999999999998754 333334444444555544443333221 111111111 11112222223334445
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITV 208 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~li 208 (256)
+....+|+.+...=+....+..+++.++++++|+.+++....+|+.++
T Consensus 197 lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 197 LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 566788899988889999999999999999999999999999998653
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.08 E-value=2.5e-09 Score=90.64 Aligned_cols=120 Identities=17% Similarity=0.098 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025172 90 WASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKK 169 (256)
Q Consensus 90 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~ 169 (256)
|+...+..|...+...++....+++...+.+++.+..... ....++...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566677787766555778889999988888776654322 1233466667777778889999999999999
Q ss_pred CccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 170 GPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 170 ~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
++..++++..++|+++.+++++++||+++..+++|..+.++|+.+....
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 9999999999999999999999999999999999999999999887643
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=1.3e-09 Score=80.96 Aligned_cols=108 Identities=20% Similarity=0.370 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHH
Q 025172 113 ILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPL 192 (256)
Q Consensus 113 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~ 192 (256)
++..++.+.+.......++..+.+.......+..++..|++....++.++++++++.++ .++++..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665554332111111112335566666776767899999999999995 88899999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 193 LHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 193 ~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+||+++..++.|.+++++|+.+..+.+.+
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999876543
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.05 E-value=8.2e-09 Score=89.28 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172 80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
.+..++-.+.|+...+..|....+. +|..++++++..+++++++.....+.. .. ...++...+..|.+.....+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~--~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---LP--TLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---CC--cHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999887764 789999999999999887776544321 11 23356666777876666778
Q ss_pred HHHHHHH-hccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 160 VGLTWCV-KKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 160 ~~~~~a~-~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
.+++.+. ++.++..++++.++.|+++.+++++ +||+++..+++|.++.++|+++....
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8888998 9999999999999999999999985 79999999999999999999887543
No 35
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.05 E-value=6.7e-09 Score=87.55 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=133.0
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
+++|+.+++.+|.-||++|.. ..-+++..+|+.+.+ +++-.+ ...|.+
T Consensus 120 si~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft-~KsTqf-------------------------~i~Gf~ 167 (349)
T KOG1443|consen 120 SILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFT-YKSTQF-------------------------NIEGFF 167 (349)
T ss_pred HHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEE-ecccce-------------------------eehhHH
Confidence 689999999999999999985 666677778888876 444322 348888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC----chhHHHHHHHHHHHHHHHHHHHHhcCCCC-----cccccchhH-HHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRYP----CKYSSTAILSLFGAIQAAILCLATNRNHS-----AWSFKGKIE-IISVLYAG 151 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~-~~~ll~~g 151 (256)
+..+++++-++--.+.+...++.+ +|+...+...-.-.+.+++..+..|+... .+...+... +..+..++
T Consensus 168 lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~ 247 (349)
T KOG1443|consen 168 LVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLIS 247 (349)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHH
Confidence 888888887777777776666543 67888888888888888888887776422 122222221 22222222
Q ss_pred HHHHHHHHHH---HHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 152 IVGSGLCYVG---LTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 152 ~~~~~~~~~~---~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
+ +..+++.+ -+..+.+++....++..-..-+.+.+++.++.+|+++...|+|..++..|+.++
T Consensus 248 l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 248 L-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred H-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 2 22333333 346677888999999999999999999999999999999999999999999888
No 36
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.04 E-value=9e-09 Score=88.78 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL 83 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 83 (256)
+.|+++.++++++|++++| |.++++.++|+.++-......-+ ........+...|....
T Consensus 130 ~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~~~~---------------a~~~~~~~n~~~G~~av 188 (345)
T KOG2234|consen 130 LTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLSPTG---------------AKSESSAQNPFLGLVAV 188 (345)
T ss_pred HHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCCCCC---------------ccCCCcccchhhhHHHH
Confidence 4688999999999999996 99999999999987522111100 00012234556999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH-HHHHHHHHHHHHhcCCCCccc-c---cchhHHHHHHHHHHHHHHHH
Q 025172 84 TVGTLLWASWFPIQSYIGKRYPCKYSSTAILSL-FGAIQAAILCLATNRNHSAWS-F---KGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~-~---~~~~~~~~ll~~g~~~~~~~ 158 (256)
+.+|+.-+...++.++..|+-..+..+.-.++. +|.++.....+..+.....+. + .+..-|...+..++ +
T Consensus 189 l~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~-----g 263 (345)
T KOG2234|consen 189 LVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAV-----G 263 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhc-----c
Confidence 999999999999999999864433333333443 444444443333322111111 1 11122444444443 3
Q ss_pred HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
=.+...-+|+.+-..=+....+..+++.+.++.+++-+++....+|+.+++.++.++...+.+
T Consensus 264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 344455567777766677778899999999999999999999999999999999999844443
No 37
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.01 E-value=1.2e-08 Score=88.51 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
++.++++++|+...+..|...++. +|..+.++++.++++.+.+... .+ ... +..++..|+......+.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~---~~~------~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RP---KVP------LNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CC---CCc------hHHHHHHHHHHHHHHHH
Confidence 668899999999999999888775 7899999999998766544331 11 111 22233345544445566
Q ss_pred HHHHHHhc-cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 161 GLTWCVKK-KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 161 ~~~~a~~~-~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
+++.++++ .++..++++.++.|+++.+++++++||+++..+++|+++.++|+.+....
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 77788887 57889999999999999999999999999999999999999999888754
No 38
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.5e-08 Score=84.36 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=138.0
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCC-CCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFD-HSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
.++-++++++++.++|.+.+| ..++++..+|+++..+.+.+.+.. .++++.+ +..+....|..|+
T Consensus 101 sll~nM~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~--------~~~~~~~~w~iGi 166 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRSKLSGLDSG--------SAQSDFFWWLIGI 166 (330)
T ss_pred cHHHHHHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhhhhcccccC--------cccccchHHHHHH
Confidence 467899999999999999996 999999999999988766543322 1111111 1123345678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHH-H-------hcCC---CCcccccchhHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCL-A-------TNRN---HSAWSFKGKIEIISVL 148 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~-------~~~~---~~~~~~~~~~~~~~ll 148 (256)
.+...+-+.-|.-.+.++..=+++ +++-+..+|.=......+++..- + ...+ .+.....-+..|..++
T Consensus 167 ~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl 246 (330)
T KOG1583|consen 167 ALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL 246 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH
Confidence 998888888888777776655544 36677788877777766655531 0 0000 0011111223344444
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+-.+ ....+----+..-...++.++++...+.-.++++++++.|+++++++.|+|++++..|..++.....+
T Consensus 247 ~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 247 FNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3322 33222223334445566778899999999999999999999999999999999999999888654433
No 39
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.2e-09 Score=89.58 Aligned_cols=191 Identities=11% Similarity=0.107 Sum_probs=149.7
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
.+|+++++.-.++++.+++.+. +.++...++|...... .+.++ ...|+
T Consensus 112 ~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~-~d~sf-------------------------~~~gY 159 (314)
T KOG1444|consen 112 LTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF-TDLSF-------------------------NLRGY 159 (314)
T ss_pred chHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc-cccee-------------------------cchhH
Confidence 3689999999999998888885 7777777777766542 22211 22699
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCC----CcccccchhHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNH----SAWSFKGKIEIISVLYAGIVGS 155 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~g~~~~ 155 (256)
.+++..++.-+.+.+..|+..+... +.+.+++|..+.+...+....+++++.. +.........+..+...++++.
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf 239 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGF 239 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999998777432 5588899999999999999988877521 1101112344677778888776
Q ss_pred HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172 156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
++.|.. .++.+..+++..++.....-..+.+-..++++++.++...+|..+-++|..++.+.+.++++
T Consensus 240 ~isy~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 240 GISYTS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 666666 49999999999999998888888888888899999999999999999999999988765544
No 40
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.98 E-value=8.2e-09 Score=87.01 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=147.1
Q ss_pred HHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHH
Q 025172 6 TFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTV 85 (256)
Q Consensus 6 ~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~ 85 (256)
+++++.++.++|.++.. .+..++.-.|+.+..+++..... .+++.++...|+.++..
T Consensus 123 Vmlmg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~s~-----------------~~~g~~ns~~G~~Ll~~ 179 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSDSS-----------------SKSGRENSPIGILLLFG 179 (327)
T ss_pred HHHHHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCCCc-----------------cccCCCCchHhHHHHHH
Confidence 56788899999999984 88888888888887765322100 03445667799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cchhHHHHHHHHHHHHHHHHHHHH
Q 025172 86 GTLLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSF--KGKIEIISVLYAGIVGSGLCYVGL 162 (256)
Q Consensus 86 s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~g~~~~~~~~~~~ 162 (256)
.-++-+.-+..+.++.+++. +.+.++++..+++++.........+...+...+ ..+..+.-++.... +.++++.+.
T Consensus 180 ~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI 258 (327)
T KOG1581|consen 180 YLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFI 258 (327)
T ss_pred HHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhhee
Confidence 99999999999999888654 678899999999988877764332222111111 11222333343444 667899999
Q ss_pred HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
++-+++.++...+.++.+.-+++++++.+.++.++++.|+.|..+++.|+++-.+-++|
T Consensus 259 ~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 259 FYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887776655
No 41
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.3e-09 Score=90.45 Aligned_cols=194 Identities=15% Similarity=0.094 Sum_probs=144.8
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTI 81 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (256)
.-+|+.++..+++|||-+..- ..++.+.+.|-.+= .|.. +..+.-...|.+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lG--vdqE---------------------~~~~~ls~~Gvi 188 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLG--VDQE---------------------GSTGTLSWIGVI 188 (347)
T ss_pred hhhHHHHhHHhhccccccccc------ceeehhheehheec--cccc---------------------cccCccchhhhH
Confidence 457999999999999999883 55555555554331 1221 112223349999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCC--cc-cccchhHHHHHHHHHHHHHHH
Q 025172 82 ALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHS--AW-SFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 82 l~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-~~~~~~~~~~ll~~g~~~~~~ 157 (256)
+++.+.++-|+..+..|+..... ..-+..+.|+.+.+.+++++...+.++-.. .+ .......|..+...|+++..+
T Consensus 189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m 268 (347)
T KOG1442|consen 189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM 268 (347)
T ss_pred HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999765433 256888999999999999888877664211 11 122445678888888877776
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN 225 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~ 225 (256)
+|... +-+|-.+|.+-.+-..-.-..-.++++.+.+|.-+..-|-|-+++++|..++.+.|..+++.
T Consensus 269 gyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 269 GYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred hheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 66653 66788888888888888888888899999999999999999999999999999887665543
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.94 E-value=3.7e-08 Score=85.34 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
.+.+++++++++|+...+..|...+.. +|....++++..+++++.+... .+ ..+. ..+..++. +.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~---~~~~---~~~~~~~~-~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FP---RLRQ---FPKRYLLA-GGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--cc---cccc---ccHHHHHH-HhHHHHH
Confidence 567889999999999999999988886 7799999999999888765421 11 1110 11222222 3323334
Q ss_pred HHHHHHHHHh----ccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 158 CYVGLTWCVK----KKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 158 ~~~~~~~a~~----~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
.+.+++.+++ ..++..++++.++.|+++.++++++++|+++..+++|+++.++|+++....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 4455555554 567788899999999999999999999999999999999999999888754
No 43
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.84 E-value=9.5e-08 Score=82.99 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=96.4
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 025172 92 SWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKGP 171 (256)
Q Consensus 92 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~ 171 (256)
.++++.|...++.+.|...+.+++..+.+...+........ ... .+..+|..++..|++ ..+.+.+.+++++++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPK--RLK-ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCC--CCC-CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence 34456788887767889999999999877665542111111 111 134467788888886 47888999999999999
Q ss_pred cchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 172 VFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 172 ~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
+.++++.++.|+++.++++++++|+++..++.|.+++++|+.+..
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999998764
No 44
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.80 E-value=8e-08 Score=70.97 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 150 AGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 150 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
.++.+.++++.++.+++++.|.+.+-.+.++.++++.+++++++||+++..+++|.+++++|+++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3446778899999999999999999999999999999999999999999999999999999998764
No 45
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.79 E-value=4.2e-07 Score=80.64 Aligned_cols=126 Identities=14% Similarity=0.134 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025172 90 WASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFK-GKIEIISVLYAGIVGSGLCYVGLTWCVKK 168 (256)
Q Consensus 90 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~g~~~~~~~~~~~~~a~~~ 168 (256)
-..+.+..|...+..+-|+.++.++++++.++..+... .+.. ...+.. ...++..++..|++.. ..+...+.++++
T Consensus 61 s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~llp~gl~~~-~~~~~~~~sl~~ 137 (350)
T PTZ00343 61 NVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFR-KIPRIKSLKLFLKNFLPQGLCHL-FVHFGAVISMGL 137 (350)
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCC-CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 34556667888888754899999999999876544432 2211 111111 2235667777887554 446667799999
Q ss_pred cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 169 KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 169 ~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
.+++.+.++..++|++++++++++++|+++..++.|.+++++|+.+....
T Consensus 138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~ 187 (350)
T PTZ00343 138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK 187 (350)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence 99999999999999999999999999999999999999999999988753
No 46
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.71 E-value=5.4e-08 Score=80.90 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=141.9
Q ss_pred HHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHH
Q 025172 8 VIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGT 87 (256)
Q Consensus 8 l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~ 87 (256)
+-+.++-+.|.++.. .++..+..+|+++..+.|.. .+| .....|.++.-.+-
T Consensus 148 iggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~------------------~sP----NF~~~Gv~mIsgAL 199 (367)
T KOG1582|consen 148 IGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQ------------------TSP----NFNLIGVMMISGAL 199 (367)
T ss_pred heeeeeccccccHHH------HHHHHHHHHHHHhhhhcccc------------------cCC----CcceeeHHHHHHHH
Confidence 445556666777765 99999999999998875542 111 23348999888888
Q ss_pred HHHHHHHHHHHHhhhcCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--chh-HHHHHHHHHHHHHHHHHHHHH
Q 025172 88 LLWASWFPIQSYIGKRYP-CKYSSTAILSLFGAIQAAILCLATNRNHSAWSFK--GKI-EIISVLYAGIVGSGLCYVGLT 163 (256)
Q Consensus 88 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~-~~~~ll~~g~~~~~~~~~~~~ 163 (256)
++-|.-..++++..+..+ +...+.++...++.+.+.......++-.+.|... .+. -....++... ++.++.....
T Consensus 200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VL 278 (367)
T KOG1582|consen 200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVL 278 (367)
T ss_pred HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHH
Confidence 888988888888888655 5577889999999998888877777644444421 111 2333344443 6677777778
Q ss_pred HHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 164 WCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 164 ~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
-.++..++..++.+....--+++++++++|..+++....-|..+++.|+++-.+.++.
T Consensus 279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 8899999999999999999999999999999999999999999999999999888743
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.69 E-value=2.9e-07 Score=77.51 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccchhHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS-FKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~~~~ 156 (256)
.|+++.+.+-+.|+....+.|-+. .. ++..+..++.+.+..+.+.......+....+. ..++..+..+...++ -..
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li~ 83 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LIG 83 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HHH
Confidence 899999999999999999987664 43 56899999999999988877766554222122 223345666666666 456
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
..++.|.++........+++--++.|++.+++|.+++||+++..|++..++..+|+..-.+.
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998776653
No 48
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.68 E-value=1.8e-07 Score=77.59 Aligned_cols=201 Identities=15% Similarity=0.069 Sum_probs=118.9
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCC----CCCCchhH
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHP----TRKTERWT 77 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 77 (256)
.|+++++..+.+.++|.+.. |+++.++...|+....+.+.+.... ..-.......+.++ .....+..
T Consensus 14 ~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al---~~l~~~~~~~~~~~~~~~~~~~g~~~ 84 (222)
T TIGR00803 14 NLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSL---KLLKLGVAIVQMVQSSAKTLMFGNPV 84 (222)
T ss_pred chHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHH---HHHHHhHeeeecCCCCccccccccHH
Confidence 46788888888888998855 5999988888887543322111000 00000000000000 11122445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH-HHHHHHHHHHHHHhcCC-CCccc--ccchhHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILS-LFGAIQAAILCLATNRN-HSAWS--FKGKIEIISVLYAGIV 153 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~~g~~ 153 (256)
.|....+.++++-+...++.++..++.+........+. ..+.+...........+ ...+. ...+...+.+ . +
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 160 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV---G-L 160 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH---H-H
Confidence 78888888888888888888887665432221212222 22222111111111111 01111 0111111111 1 2
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
..+.+..+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++|
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 45567778899999999999999999999999999999999999999999999999998764
No 49
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.67 E-value=1.7e-06 Score=73.78 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
.+....+..++.|+......|.......+.....+.+...+.....+....... .... ....+...+..+.+....
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPR--GLRP--ALRPWLLLLLLALLGLAL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcc--cccc--cccchHHHHHHHHHHHHH
Confidence 778888888899999999998887652244545555776666663323221110 0111 111134455566678889
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHH-HHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDI-PLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~-l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
.+.+++.++++.++..++.+.++.|++..++++ ++++|+++..++.|..+.++|+.+........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 999999999999999999999999999999997 66799999999999999999999998766543
No 50
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.65 E-value=8.4e-07 Score=74.95 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcccccccccCCcceee---hhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHH
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVV---GTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGT 80 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~---g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (256)
+.+.++++++++|.-+..+ +.+ ++++.++|+.+....+..... .++..+...|.
T Consensus 84 vg~sl~gv~~fgEW~~~~~-----~~~G~~Al~liiiGv~lts~~~~~~~~------------------~~~~~~~~kgi 140 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQ-----KIIGFLALVLIIIGVILTSYQDKKSDK------------------SSSKSNMKKGI 140 (269)
T ss_pred HHHHHHHHhhcCCCCCcch-----HHHHHHHHHHHHHHHHHhccccccccc------------------cccccchhhHH
Confidence 3578899999999988775 343 567778888887642222100 11234556899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 81 IALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 81 ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
+..+++.+.|..|.++.|... .+++...+-+.+.-.+...++....++ ... ....|. -+..|++ -.++-.
T Consensus 141 ~~Ll~stigy~~Y~~~~~~~~---~~~~~~~lPqaiGm~i~a~i~~~~~~~---~~~--~k~~~~-nil~G~~-w~ignl 210 (269)
T PF06800_consen 141 LALLISTIGYWIYSVIPKAFH---VSGWSAFLPQAIGMLIGAFIFNLFSKK---PFF--EKKSWK-NILTGLI-WGIGNL 210 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CChhHhHHHHHHHHHHHHHHHhhcccc---ccc--ccchHH-hhHHHHH-HHHHHH
Confidence 999999999999999977533 245655554444333333333332221 111 111222 2345653 346777
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHhh
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIG----SLLGSITVIIGLYI 214 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~----~~iG~~lii~gi~l 214 (256)
+|..+.++.+.+..=.+..+.++++.+.+.+++||+=+.+ .++|.+++++|.++
T Consensus 211 ~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 211 FYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 8899999999999999999999999999999999987654 56788888888754
No 51
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.60 E-value=5.2e-07 Score=71.81 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=127.2
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL 83 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 83 (256)
.|+.+++++++++|+... |+++.++++.|+.++...|. .....+.|+..+
T Consensus 91 AFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN------------------------~~a~e~iGi~~A 140 (290)
T KOG4314|consen 91 AFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN------------------------EHADEIIGIACA 140 (290)
T ss_pred HHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc------------------------hhhhhhhhHHHH
Confidence 578999999999999988 59999999999999974332 123345999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC--chhHHHHHHHHHHHHHHHHHHHHhc-CCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 84 TVGTLLWASWFPIQSYIGKRYP--CKYSSTAILSLFGAIQAAILCLATN-RNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
+.|+..-|.|-+.-|+....-. +.-.++....++...+..+..++.. ...+.++-.....|..+...+.+..+..+
T Consensus 141 V~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAFN~- 219 (290)
T KOG4314|consen 141 VGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAFNF- 219 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHHhh-
Confidence 9999999999999998665321 2222222222222222222222111 11223331122347766655554444333
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+.+.++....|...++-+.+...--...+.++-+-..+...+.|.++|++|.++....+.+
T Consensus 220 ~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 220 LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 3468888889999888888888888888888777778888999999999999888776543
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.58 E-value=1.6e-06 Score=72.65 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=132.6
Q ss_pred hHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172 3 PVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA 82 (256)
Q Consensus 3 P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 82 (256)
=+|+.+++.-+++.++..++ |+|+.....|+..+...|-. .. .+|-....+-..|+++
T Consensus 123 iIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~-~~---------------~~p~~d~s~iitGdll 180 (372)
T KOG3912|consen 123 IIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVH-LV---------------TDPYTDYSSIITGDLL 180 (372)
T ss_pred hhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeecc-cc---------------cCCccccccchhhhHH
Confidence 36899999999999999995 99999999999887632211 00 0112233455699999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcC-----CCCcccccchhHHHH---------H
Q 025172 83 LTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNR-----NHSAWSFKGKIEIIS---------V 147 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------l 147 (256)
.+++-+.-|+..+.-+|..++. .+|...+.|..++|.+++-........ ..+........+|.- .
T Consensus 181 IiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~ 260 (372)
T KOG3912|consen 181 IIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPS 260 (372)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCch
Confidence 9999999999999987766654 378999999999997665555433221 111111110111221 1
Q ss_pred HHHHHHHHHHHHHHHH----HHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 148 LYAGIVGSGLCYVGLT----WCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 148 l~~g~~~~~~~~~~~~----~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
++..+.+..++-.++| .--+..++++=.++..+...+-=+++.....|.++..|+.|.++.+.|+++|.
T Consensus 261 l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 261 LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444444 23455667777788888888888889999999999999999999999999986
No 53
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.53 E-value=1.9e-06 Score=74.55 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172 79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 158 (256)
|+++.++++++|+...+..|+.. ..+. .... ...++.++..........+ ... ....+..-+..|+ .-..+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence 57889999999999999998775 3322 2222 4555555555444443321 111 1112222333343 35678
Q ss_pred HHHHHHHHhccCccchhhchh-hHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHhhheecc
Q 025172 159 YVGLTWCVKKKGPVFTAAFSP-LVQIMAAMFDIPLLHERLHIGS----LLGSITVIIGLYILLWGK 219 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~-l~pv~a~ll~~l~~~E~i~~~~----~iG~~lii~gi~l~~~~~ 219 (256)
+.+|+.++++.+.+.+-.+.+ ++++++.+++.+++||+.+..+ ++|.+++++|+++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 899999999999999988888 9999999999999999999999 999999999998875543
No 54
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.46 E-value=8.1e-06 Score=70.67 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172 77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 156 (256)
..|..++++++++|+......|....+. ++....++++.++++++++....... .. ...++...+..|+. .+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~~~---~~---~~~~~~~~~~~g~~-~~ 82 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPWRL---RF---AKEQRLPLLFYGVS-LG 82 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHHhc---cC---CHHHHHHHHHHHHH-HH
Confidence 5899999999999999999999988875 77999999999999888765432111 11 22345556666664 56
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
..+.++++++++.++..++.+.++.|+++.+++. |++. +..+.++.++|+++...
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence 6778889999999999999999999999998873 5554 34566777888877653
No 55
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.39 E-value=1.6e-05 Score=69.76 Aligned_cols=144 Identities=10% Similarity=-0.002 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172 75 RWTFGTIALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIV 153 (256)
Q Consensus 75 ~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 153 (256)
+.+.+.+++-.-+++-+...+.+..+.++. .-|....++....-.+...+...... ....+.......|+..+..++
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~- 87 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLAL- 87 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHH-
Confidence 445667777777777777777776665542 23444444444443333333322222 111222112234666666676
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
.=+.+-++.+.|+++++.+.+.++.....++++++++++++++.++.+++|+++++.|+.+......
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 5568888999999999999999999999999999999999999999999999999999998887754
No 56
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.36 E-value=5.7e-07 Score=72.89 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccc-cchhHHHHHHHHHHH
Q 025172 77 TFGTIALTVGTLLWASWFPIQSYIGKR-YPCKYSSTAILSLFGAIQAAILCLATNRNHSA-WSF-KGKIEIISVLYAGIV 153 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~ll~~g~~ 153 (256)
..|.+++...++.-+.+....|+..+- .-.....++|..+.+..+++...++.++..+. ..- .+.....+.+..|+
T Consensus 154 N~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl- 232 (309)
T COG5070 154 NPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL- 232 (309)
T ss_pred CCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-
Confidence 378999999999999999999876652 12448889999999999999999888763221 111 12233556666776
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccc
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEM 223 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~ 223 (256)
+++.--++-.|+++-.+.+..+++..+.-.-..+-|.++|+|+.+..++....+-..+..++.+.+.+++
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556678999999999999999999999999999999999999999999998888888877665433
No 57
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.33 E-value=9.6e-06 Score=60.45 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 151 GIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 151 g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
.+++.+++++++.++++++|...+ +++.-+--+.+.+++++++||++|+.+++|..+|++|++......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 445667899999999999998887 555678899999999999999999999999999999998885544
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.31 E-value=5.5e-06 Score=71.86 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhH-HHHHHHHHHHHhccc--chh----hHHHHHHHHHHHHhhhe
Q 025172 144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLV-QIMAAMFDIPLLHER--LHI----GSLLGSITVIIGLYILL 216 (256)
Q Consensus 144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~-pv~a~ll~~l~~~E~--i~~----~~~iG~~lii~gi~l~~ 216 (256)
|..++. -+.+......+.|+|+++.+++.+..+.+.. ...+++-|.++++|. .+. ...+|+.+++.|+++..
T Consensus 213 y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~ 291 (300)
T PF05653_consen 213 YLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLS 291 (300)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheee
Confidence 444333 3446667777788999999999887766654 555666667778874 333 35677888889998875
Q ss_pred ecc
Q 025172 217 WGK 219 (256)
Q Consensus 217 ~~~ 219 (256)
..|
T Consensus 292 ~~~ 294 (300)
T PF05653_consen 292 SSK 294 (300)
T ss_pred ccC
Confidence 544
No 59
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.28 E-value=1.7e-05 Score=58.30 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 151 GIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 151 g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
.+++.+++|.++..+++++|...+ ++..-+.-+.+.++++++|||++++.+++|+++|++|++.....+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344667889999999999998877 555778889999999999999999999999999999999986544
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.10 E-value=8.9e-05 Score=54.30 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 153 VGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
.+.+++|++...++|++|...+ ++..-+--+.+.+.+++++||++++.+++|.++++.|+....
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999998876 777788899999999999999999999999999999998763
No 61
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.08 E-value=4.6e-05 Score=66.15 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHH
Q 025172 75 RWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVG 154 (256)
Q Consensus 75 ~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 154 (256)
++..|..+++.|+++.+....++|+...+.+. -..-. - ....+.+. ++. | +.|+..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~---~-------------~~~~~~l~--~~~-W----~~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA---G-------------SGGRSYLR--RPL-W----WIGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc---c-------------chhhHHHh--hHH-H----HHHHHH
Confidence 45699999999999999999999987665421 00000 0 00000011 111 2 233444
Q ss_pred HHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 155 SGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
.+++..+...++...|++.++.+..+.-++..+++..++||+++...++|++++++|..+......++
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~ 127 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKE 127 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCC
Confidence 45666788889999999999999999999999999999999999999999999999988776544433
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.08 E-value=0.00014 Score=63.24 Aligned_cols=127 Identities=17% Similarity=0.058 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhcC-Cc--hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025172 92 SWFPIQSYIGKRY-PC--KYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKK 168 (256)
Q Consensus 92 ~~~v~~k~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~ 168 (256)
.+.+.++++.++. .. +..+++.++...++...+.......... ....+...+..++ ...++..+-+.++++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3446666665532 23 6788888888888877666554441111 1112333444454 556777889999999
Q ss_pred cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172 169 KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 169 ~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
++...-.+.-...|+..++++++++|++.+..++++.+++++|+++....+.++.+
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999999999999999999999999999999999999999999887654433
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.08 E-value=7.7e-07 Score=74.01 Aligned_cols=136 Identities=11% Similarity=0.102 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172 77 TFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 156 (256)
.+|..+..+| ..+....++.++.... +|......++++--++..+....... +.+.....-.++++=|+++ .
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~----~v~gp~g~R~~LiLRg~mG-~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQ----PVIGPEGKRKWLILRGFMG-F 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEee----eeecCCCcEEEEEeehhhh-h
Confidence 3788888888 7777778888777665 44656665543333222222211111 1111111112233345533 3
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
.+.+..+|++++.+-+.+.++..+.|+++++++|++++|+.+....+|..+.+.|++++.+...
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 5566778999999999999999999999999999999999999999999999999999876543
No 64
>PRK11431 multidrug efflux system protein; Provisional
Probab=98.07 E-value=7.8e-05 Score=54.28 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
+++.+.+|++...++|++|...+ ++..-+-.+.+.+.+++++||++|+.+++|..++++|++....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34567889999999999998876 7777899999999999999999999999999999999988754
No 65
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=98.06 E-value=2.7e-05 Score=56.30 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 153 VGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
++..++|.+...++|++|...+ ++..-.-.+.+.+.++++|||+++..+++|..++++|+......+
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3556889999999999998776 888889999999999999999999999999999999998876543
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.02 E-value=0.00025 Score=54.37 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 025172 80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCY 159 (256)
Q Consensus 80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 159 (256)
.++++.++++-++...+..++.++..+++...++.+..+.+.+.+..+..++. .........|+.++ -|+ ..+..-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence 46788888888898888888888866689999999999999888888776653 22211222344444 444 455666
Q ss_pred HHHHHHHhccCccchhhc-hhhHHHHHHHHHHH----HhcccchhhHHHHHHHHHHHHhh
Q 025172 160 VGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIP----LLHERLHIGSLLGSITVIIGLYI 214 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l----~~~E~i~~~~~iG~~lii~gi~l 214 (256)
.+..+.+++++++.+... ..-|-+.+++++.+ .-+++++..+++|.+++++|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777889999998877554 44566667777765 34688999999999999999864
No 67
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.90 E-value=0.00056 Score=60.21 Aligned_cols=194 Identities=14% Similarity=0.120 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhcccc---cccccCCcceeehhhheeccceeeeee---cCCccCCCCCchhhhhhhhcccCCC-CCCchh
Q 025172 4 VITFVIALPFGLETV---DIKGISGKAKVVGTLVCIGGAMLLTLY---KGMPLFDHSYSQAETAINVMHMHPT-RKTERW 76 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~---~~~~~~~~~k~~g~~l~~~Gi~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (256)
++..++..++++|.. +..+ +..-.+|+++.++|+++.... +++.. +.+ .++.+.
T Consensus 112 v~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~~~~-----------------~~~~~~~~~~ 172 (345)
T PRK13499 112 IVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKERKM-----------------GIKKAEEFNL 172 (345)
T ss_pred HHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhccccc-----------------ccccccccch
Confidence 456677788888765 2221 111267788888999887631 11100 000 123455
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhhhcCCchhHHHHHHHH---HHHHHHH-HHHHH---hcCCCCccccc-ch
Q 025172 77 TFGTIALTVGTLLWASWF-------PIQSYIGKRYPCKYSSTAILSL---FGAIQAA-ILCLA---TNRNHSAWSFK-GK 141 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~-~~~~~---~~~~~~~~~~~-~~ 141 (256)
.+|.++++++++.++.|. ...+...+...++.....-+.. +++.+.- +.+.. .++..+..... .+
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 699999999999999999 5444322221233333333332 3333222 22221 11211111110 10
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh----hchhhHHHHHHHHHHHHhcccch------hhHHHHHH
Q 025172 142 -----IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTA----AFSPLVQIMAAMFDIPLLHERLH------IGSLLGSI 206 (256)
Q Consensus 142 -----~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s----~~~~l~pv~a~ll~~l~~~E~i~------~~~~iG~~ 206 (256)
.....-...|+ .=.+++.+|..+-++.+..... +.+.+..+++.+++++ +||.=+ ...++|.+
T Consensus 253 ~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~v 330 (345)
T PRK13499 253 KPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCV 330 (345)
T ss_pred chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHH
Confidence 11111233344 3456777888888887655443 3448888999999994 999766 66789999
Q ss_pred HHHHHHhhheec
Q 025172 207 TVIIGLYILLWG 218 (256)
Q Consensus 207 lii~gi~l~~~~ 218 (256)
++++|..+..+.
T Consensus 331 liI~g~~lig~~ 342 (345)
T PRK13499 331 VIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHhhc
Confidence 999998887654
No 68
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00034 Score=60.03 Aligned_cols=190 Identities=14% Similarity=0.178 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHH
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIAL 83 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 83 (256)
+..++++..++|||+++.. .+|++++++|-.+++...+...+. .+..+..+ ...+..+ +.....
T Consensus 102 i~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~haP~e~~i------~t~~el~~---~~~~~~F-liy~~~ 165 (335)
T KOG2922|consen 102 IISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHAPKEQEI------ESVEEVWE---LATEPGF-LVYVII 165 (335)
T ss_pred HHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEecCccccc------ccHHHHHH---HhcCccH-HHHHHH
Confidence 5678999999999999998 999999999999998543322111 00000000 0001111 112222
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH----------HHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172 84 TVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAIL----------CLATNRNHSAWSFKGKIEIISVLYAGIV 153 (256)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 153 (256)
+...++ +-....+ .++ ..-.+..|.++.+.+..+-+ -....+ ..+...+..|..++....
T Consensus 166 iil~~~--il~~~~~---p~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g---~~ql~~~~ty~~~l~~~~- 235 (335)
T KOG2922|consen 166 IILIVL--ILIFFYA---PRY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG---NNQLFYPLTWIFLLVVAT- 235 (335)
T ss_pred HHHHHH--HHheeec---ccc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC---CcccccHHHHHHHHHHHH-
Confidence 221111 1111122 111 11122333333333321111 111111 112223333555554443
Q ss_pred HHHHHHHHHHHHHhccCccchhhchh-hHHHHHHHHHHHHhcccch------hhHHHHHHHHHHHHhhheecc
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSP-LVQIMAAMFDIPLLHERLH------IGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~-l~pv~a~ll~~l~~~E~i~------~~~~iG~~lii~gi~l~~~~~ 219 (256)
+.....-..|+|++..+++.++.+.+ +-..++++-+.++|+|--. ....+|+..++.|+.+....|
T Consensus 236 ~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 236 CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence 66666677789999999888876665 4567778888899988533 236778888999988774433
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.71 E-value=0.00038 Score=49.64 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 025172 152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITV 208 (256)
Q Consensus 152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~li 208 (256)
+.+.++++.++.+++|+++.+.+ +++.-+..+...+.+++++||++|..+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33667889999999999999988 6667799999999999999999999999999875
No 70
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0019 Score=49.86 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
...++.++++++-.+...+..++.+...+|....+..+..+.+.+..+..+.++.. .+.......|+..+ -|+++...
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~-GG~lGa~~ 82 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWI-GGLLGAIF 82 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHH-ccchhhhh
Confidence 67788889999999999999999888777898999999999998888887754432 22211222344333 24333222
Q ss_pred HHHHHHHHHhccCcc-chhhchhhHHHHHHHHHHHHhc----ccchhhHHHHHHHHHHHHhhheec
Q 025172 158 CYVGLTWCVKKKGPV-FTAAFSPLVQIMAAMFDIPLLH----ERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~-~~s~~~~l~pv~a~ll~~l~~~----E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
- ..-.....+++++ ...+...-|-+.+++++-+=+. .+++...++|++++++|+++....
T Consensus 83 v-t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 83 V-TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred h-hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 2 2223555565554 4466667777888888876654 679999999999999996665443
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.44 E-value=0.0015 Score=57.49 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH-----HhcCCC-CcccccchhHHHHHHH
Q 025172 76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCL-----ATNRNH-SAWSFKGKIEIISVLY 149 (256)
Q Consensus 76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~-~~~~~~~~~~~~~ll~ 149 (256)
...|+++.+++++||+.+.+-.|+ .+++ + ++.. |- ..+ ++.+++.. +..++. +.....+...+..-+.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w-~-wE~~-W~-v~g-i~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKW-S-WETM-WS-VGG-IFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCC-c-hhHH-HH-HHH-HHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 358999999999999999999988 4554 2 3333 33 222 22222211 111111 1112123344555566
Q ss_pred HHHHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcccc---h----hhHHHHHHHHHHHHhhheecccc
Q 025172 150 AGIVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHERL---H----IGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 150 ~g~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E~i---~----~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
.|++- .+++..+..++++++.+.. .+-.-++-+.+.+++.+++||-. + ..-++|.+++++|+++..+...+
T Consensus 79 ~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 79 FGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67644 5889999999999998876 55567888999999999999743 2 34778899999999999884433
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.35 E-value=0.0011 Score=55.86 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
...+..-++ ...+...+.+.++++.+|+...++..+..+++.+++++++|.+++..||++..+.++|+.+........
T Consensus 17 ~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 17 TLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 333333343 355666788899999999999999999999999999999999999999999999999999988766544
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.26 E-value=0.0076 Score=51.21 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhch-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHHhhhe
Q 025172 142 IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFS-PLVQIMAAMFDIPLLHERLHIGSL----LGSITVIIGLYILL 216 (256)
Q Consensus 142 ~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~-~l~pv~a~ll~~l~~~E~i~~~~~----iG~~lii~gi~l~~ 216 (256)
..+..-+..|++ =.+++..+++++++.+.+++-.++ -++-+.+.++++++|||--+..++ ++.+++++|+++..
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 446666777874 468999999999999999987776 677778999999999997775543 36788889999998
Q ss_pred eccccccc
Q 025172 217 WGKNKEMQ 224 (256)
Q Consensus 217 ~~~~~~~~ 224 (256)
++++++++
T Consensus 122 ~~~~~~~~ 129 (269)
T PF06800_consen 122 YQDKKSDK 129 (269)
T ss_pred cccccccc
Confidence 87766554
No 74
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.17 E-value=0.0036 Score=46.03 Aligned_cols=109 Identities=14% Similarity=0.047 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025172 85 VGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTW 164 (256)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~ 164 (256)
+-+++|+..+-+.|+..+..++.-.- . +....... ++. .++ +. ..+.....+-..|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll~-----n~~------y~----ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LLL-----NPK------YI----IPFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HHH-----hHH------HH----HHHHHHHHHHHHHHH
Confidence 45689999999999988865432221 1 21111111 100 111 11 122233345578889
Q ss_pred HHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 165 CVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 165 a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
.+++.+-+.+..+ +.+.=+++++.++++.+|..+...++|++++++|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999998888 59999999999999888889999999999999998764
No 75
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.99 E-value=0.0074 Score=50.93 Aligned_cols=133 Identities=13% Similarity=0.021 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172 79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 158 (256)
|.+..+.++++++.+.+=.|+.... |.+.+..+++....+..++..+..+.. .+. ....+...++ +.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p--~f~--p~amlgG~lW------~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFP--PFY--PWAMLGGALW------ATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCC--cce--eHHHhhhhhh------hcC
Confidence 4567889999999999998876533 556666666665555555555444321 111 1111111111 111
Q ss_pred HHHHHHHHhccCccch-hhchhhHHHHHHHHHHH-Hhccc-----chhhHHHHHHHHHHHHhhheecccccc
Q 025172 159 YVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIP-LLHER-----LHIGSLLGSITVIIGLYILLWGKNKEM 223 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l-~~~E~-----i~~~~~iG~~lii~gi~l~~~~~~~~~ 223 (256)
-.+-.-.++.++-... .+....+-+.+-..+.+ +|+++ -.+..++|++++++|..++...|.+++
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 1222233333332222 23344455666665544 34432 346689999999999999987766553
No 76
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0008 Score=57.79 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHH
Q 025172 74 ERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIV 153 (256)
Q Consensus 74 ~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 153 (256)
.++..|..+.+.|.+..+...++.|+..++. .. . ..-.+.+...+. .. ...+.|++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~-~~---~--------------~~ra~~gg~~yl-~~-----~~Ww~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRA-GA---S--------------GLRAGEGGYGYL-KE-----PLWWAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHH-hh---h--------------cccccCCCcchh-hh-----HHHHHHHH
Confidence 4456999999999999999999998877663 21 0 010011111111 11 22345666
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccccc
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN 225 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~ 225 (256)
..+++-.+-+-++...|++.++.+..+..++..+++..+++|++++.-.+|++++++|.++.....+++++.
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 677777888888888999999999999999999999999999999999999999999988777665554443
No 77
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.77 E-value=0.0016 Score=56.68 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=91.5
Q ss_pred HHHHHHHhhh--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025172 93 WFPIQSYIGK--RYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKKG 170 (256)
Q Consensus 93 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~ 170 (256)
..+..|+..+ .++-|+..+...+..+.+..+..-.+...+.. +..+...+..++-+|+ .-.++-++-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence 3444677777 55677888888777777766655544332211 2223345777777787 44578888899999999
Q ss_pred ccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 171 PVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 171 ~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
.+..-.+-.++|++++++++++.+|+.+...+.....++.|+.+..+.+
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e 157 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE 157 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc
Confidence 9999999999999999999999999999877777777777776666543
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0016 Score=54.01 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
...+.+++=++.|+.......+.. ..|...+ .-..++++++.+..++.-.+ .. +...+..-+..|.+-+ +
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~-lGtT~GALifaiiv~~~~~p--~~---T~~~~iv~~isG~~Ws-~ 71 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFG---GKPYQQT-LGTTLGALIFAIIVFLFVSP--EL---TLTIFIVGFISGAFWS-F 71 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecC---CChhHhh-hhccHHHHHHHHHHheeecC--cc---chhhHHHHHHhhhHhh-h
Confidence 356788889999998888775443 2334333 34455555555555443211 11 2233555566777554 7
Q ss_pred HHHHHHHHHhccCccchhhch-hhHHHHHHHHHHHHhcccchhhHH-H---HHHHHHHHHhhheeccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFS-PLVQIMAAMFDIPLLHERLHIGSL-L---GSITVIIGLYILLWGKN 220 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~-~l~pv~a~ll~~l~~~E~i~~~~~-i---G~~lii~gi~l~~~~~~ 220 (256)
++..++++++..+.+++..++ -++-+-+.++++++|||--+..+. + ..+++++|+++..++++
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 899999999999999987665 467788899999999998887653 3 45777888888877654
No 79
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.66 E-value=0.00024 Score=52.47 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
+.|+++++++++++|||++.++ +.+++++++|++++..
T Consensus 69 ~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 69 LSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence 4699999999999999999996 9999999999999873
No 80
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.00019 Score=59.33 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=115.0
Q ss_pred HHHHHHHhhcccccccccCCcceee---hhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHH
Q 025172 6 TFVIALPFGLETVDIKGISGKAKVV---GTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIA 82 (256)
Q Consensus 6 ~~l~~~~~~~ek~~~~~~~~~~k~~---g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 82 (256)
+.+++++.++|.-+..+ +.+ ++++.++|+.+...-+...-+ .++..+...|...
T Consensus 100 ~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~nk~------------------~~~~~n~kkgi~~ 156 (288)
T COG4975 100 TSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNNKE------------------EENPSNLKKGIVI 156 (288)
T ss_pred ceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccccc------------------ccChHhhhhheee
Confidence 45677888999887765 344 456777888887642221000 2233445689999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 025172 83 LTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGL 162 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~ 162 (256)
.+.|.+.|-.|.+..+...-+.-+.+.-...-+.++++. +... .. +.. .....+.-+..|++- +.+-.++
T Consensus 157 L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali---~~~~-~~---~~~--~~K~t~~nii~G~~W-a~GNl~m 226 (288)
T COG4975 157 LLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI---LGFF-KM---EKR--FNKYTWLNIIPGLIW-AIGNLFM 226 (288)
T ss_pred eeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH---Hhhc-cc---ccc--hHHHHHHHHhhHHHH-HhhHHHH
Confidence 999999999999998755422212232223333333322 2221 11 111 222334444566644 4677788
Q ss_pred HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHhhhee
Q 025172 163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGS----LLGSITVIIGLYILLW 217 (256)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~----~iG~~lii~gi~l~~~ 217 (256)
..+-++.+..+.=.++.+..+++.+-++++++|+=+..+ ++|.+++++|..+.-.
T Consensus 227 l~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 227 LLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 889999998888888999999999999999999988765 5677888888766543
No 81
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.26 Score=43.19 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC---chhHHHHHHHHHHHHHHHHHHHHhc----CC-C---CcccccchhHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYP---CKYSSTAILSLFGAIQAAILCLATN----RN-H---SAWSFKGKIEIIS 146 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~----~~-~---~~~~~~~~~~~~~ 146 (256)
.-.+.++...+.++......|...++.. .+.+.++..=++-.++.....+... +. . .......+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 5567777778888888888887766432 2333444333444444444443321 10 0 0000111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 147 VLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 147 ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
+..-++ ..++..-+++.+..+.+|++..+...+..+.+.++++++++++++..||...++.+.|+.+.+...
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 221121 333444577899999999999999999999999999999999999999999999999999998443
No 82
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.97 E-value=0.0075 Score=48.47 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
+-+.|..++++++|+.++.+....-.+..+++|+++++++...+++..++.+-|+++..|..+..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 34778899999999999999999999999999999999999999999999999999998876544
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.81 E-value=0.024 Score=46.84 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhh-cCC--c--------hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHH
Q 025172 88 LLWASWFPIQSYIGK-RYP--C--------KYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSG 156 (256)
Q Consensus 88 ~~~a~~~v~~k~~~~-~~~--~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 156 (256)
+||=.|.+.+.++.+ ++. + ....++.+|....++.=+...+..... .- ....+. .....+ ...
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~-~D---~t~~~~-YaAcs~-sYL 96 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTE-ID---NTPTKM-YAACSA-SYL 96 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccc-cc---CCcchH-HHHHHH-HHH
Confidence 678888888887766 332 1 244556666666655544433333211 11 111122 222222 455
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccccc
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
+++..-|.++|..+=-+.-+--+..|+-..++++++.+.+-+|..++-..+|++|+.+..|+++|...
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 67777899999999777778889999999999999999999999999999999999999998665443
No 84
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.58 E-value=0.016 Score=51.02 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 156 GLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
+++.+.++.++.+.+++..+++++..-+|++.++.++-+|++++.+.++.++.+.|++++...+.++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 5677888999999999999999999999999999999999999999999999999999998876544
No 85
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.45 E-value=0.0025 Score=46.94 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
.|+++.++++++++||+++++ ++|+.+.++|++++.
T Consensus 73 ~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 73 NFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 578999999999999999995 999999999998764
No 86
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.71 E-value=0.26 Score=43.12 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH-HHHHHHHHHHHHHHHH--HhcCCC-CcccccchhHHHHHHHHH
Q 025172 76 WTFGTIALTVGTLLWASWFPIQSYIGKRYPCKYSST-AILSLFGAIQAAILCL--ATNRNH-SAWSFKGKIEIISVLYAG 151 (256)
Q Consensus 76 ~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~~~~-~~~~~~~~~~~~~ll~~g 151 (256)
-..|+++..+++++.+.+.+=.||.. ++ + ++.. ..+.+++-+ ..|... +.-++. +.....+...+....+.|
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk-~W-s-WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVK-GW-S-WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcC-Cc-c-HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45899999999999999999998773 43 3 3322 222222222 222222 222211 111112223355555567
Q ss_pred HHHHHHHHHHHHHHHhccCccch-hhchhhHHHHHHHHHHHHhcc-------cchhhHHHHHHHHHHHHhhheecccc
Q 025172 152 IVGSGLCYVGLTWCVKKKGPVFT-AAFSPLVQIMAAMFDIPLLHE-------RLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 152 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~a~ll~~l~~~E-------~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
++- +++-..|-.++++++.+.. ++..-+.-+++.++--++.++ +-....++|.+++++|+.+.-+.-.+
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 644 4666788899999996653 555566666666666555432 22346899999999999998776433
No 87
>PRK02237 hypothetical protein; Provisional
Probab=94.30 E-value=0.38 Score=34.80 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=40.0
Q ss_pred hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
+.+.-...+.++++.|.+-|++++.+.++|.+++++|..++.+..
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 666777788899999999999999999999999999998887654
No 88
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=94.14 E-value=3.1 Score=39.11 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=18.5
Q ss_pred hchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 176 AFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 176 ~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
+.....|+-+.++|.+.-.-.+.....++++.++++..+.
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3344466667777765433333333333333333443333
No 89
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=2.3 Score=36.96 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=78.7
Q ss_pred HHHHHHhhhcCC--chhHHHHHHHHHHHHHHHHHHHHhcCCCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025172 94 FPIQSYIGKRYP--CKYSSTAILSLFGAIQAAILCLATNRNHSA--WSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKK 169 (256)
Q Consensus 94 ~v~~k~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~ 169 (256)
.+..|.....++ ..+....+|.+.+.+.....-...--+.+. +..........+++.+-+.+ =.++++++
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t------~~~slk~l 101 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT------GSKSLKYL 101 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH------cccccccc
Confidence 344455555444 334444488887777766655432212222 22111111222333333222 25889999
Q ss_pred CccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 170 GPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 170 ~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
+....+++-..+|+++.+...+++|-+++...+....++++|........
T Consensus 102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d 151 (314)
T KOG1444|consen 102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD 151 (314)
T ss_pred CchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999987776543
No 90
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.96 E-value=1.3 Score=38.29 Aligned_cols=123 Identities=9% Similarity=0.087 Sum_probs=85.3
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccch-hHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh
Q 025172 98 SYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWS-FKGK-IEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTA 175 (256)
Q Consensus 98 k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s 175 (256)
|...+.+.=|.-++.+...+-..+....-...+...+.-+ ..+. ...-.+.-.|+ ++++=-.+-|+++++++.+..+
T Consensus 36 ~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSlYT 114 (349)
T KOG1443|consen 36 KWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSLYT 114 (349)
T ss_pred hhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeeeee
Confidence 3444444445666666666555544444444443211111 1111 12222333444 6777778889999999999999
Q ss_pred hchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 176 AFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 176 ~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
+.-+..++|-.+++.++-=|++++.-..-..+|-+|+++..+++.+
T Consensus 115 M~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 115 MTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred eccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 9999999999999999999999999999999999999999887654
No 91
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=92.82 E-value=0.77 Score=33.18 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=40.1
Q ss_pred hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
+.+.-...+.++++++.+-+++++.+.++|..++++|+.++.+..
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 566677788899999999999999999999999999998887754
No 92
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.57 E-value=5.1 Score=34.69 Aligned_cols=128 Identities=10% Similarity=0.018 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhh--------cCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 025172 89 LWASWFPIQSYIGK--------RYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYV 160 (256)
Q Consensus 89 ~~a~~~v~~k~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~ 160 (256)
.+-.+.++++++.. ++.++.-..+.+.+.+.+........+... ......|...-+.++ ...++-.
T Consensus 25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~~~apl~~y~~is~-tn~~s~~ 98 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-----LSGVAPLYKYSLISF-TNTLSSW 98 (327)
T ss_pred HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-----CCCCCchhHHhHHHH-HhhcchH
Confidence 33445566655433 334556667777777777664444333221 112234666667776 5567778
Q ss_pred HHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 161 GLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 161 ~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
|.+.++++++=-+-.+.-...-+-.++++.++.+.+.+...++-+.+|-.|+.+..+.+...
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 88899999997777788888888889999999999999999999999999998888775544
No 93
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=92.24 E-value=0.014 Score=48.81 Aligned_cols=138 Identities=10% Similarity=0.015 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHH
Q 025172 74 ERWTFGTIALTVGTLLWASWFPIQSYIGKRY-PCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGI 152 (256)
Q Consensus 74 ~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ 152 (256)
...++|..++-.-.+|-......+..+.+++ ..|...++.....-++...++..+... ... .-|...+.+++
T Consensus 14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~~----~~~~hYilla~ 86 (336)
T KOG2766|consen 14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YIK----AKWRHYILLAF 86 (336)
T ss_pred hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HHH----HHHHHhhheeE
Confidence 3445666666666666666666666666653 345555565555555555555544331 111 12444555555
Q ss_pred HHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 153 VGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
.-+-+-++..+|.|+.+-+.+.++..-..+...+++|++++.+-.+.++.|.+++++|+.+.....
T Consensus 87 -~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 87 -VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred -EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 334455566799999999999999999999999999999999999999999999999998887654
No 94
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.28 E-value=8.2 Score=32.65 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHH
Q 025172 79 GTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLC 158 (256)
Q Consensus 79 G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 158 (256)
...+++.+.++--...-+.|.+-... .+...+.++..+++++++.+.-.+... .+..+|..++..|+ +.+.-
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPwr~r------~~~~~~~~~~~yGv-sLg~M 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPWRRR------LSKPQRLALLAYGV-SLGGM 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHHHhc------cChhhhHHHHHHHH-HHHHH
Confidence 56777888887777788888777664 668899999999999887776433321 13345777887887 45555
Q ss_pred HHHHHHHHhccCccchhhchhhHHHHHHHHH
Q 025172 159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFD 189 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~ 189 (256)
..+++.+++++|-..+..+.++-|+.-.+++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 5666799999999999999999998776654
No 95
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.33 E-value=0.69 Score=39.52 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheec
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
+-..+-.+++.++....++..-+.---..+|+.+++.-++|.+++..+|.|+..+.+|++++-+.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44455577788888888888888888889999999999999999999999999999999888655
No 96
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=88.81 E-value=0.11 Score=38.79 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
+.++++++++++|++++.+ ++|+.+.++|++.+-.
T Consensus 69 v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 69 LFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 4578899999999999995 9999999999988753
No 97
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=88.37 E-value=0.11 Score=38.22 Aligned_cols=34 Identities=15% Similarity=0.432 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
+.++++++++++|++++.+ ++|+.+.++|++++-
T Consensus 69 v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 3578899999999999995 999999999999874
No 98
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=2.7 Score=30.21 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred hhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
+.+.-...+.++++.+++=|.+++.+.++|..+.++|..++.+..
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 566777888999999999999999999999999999987777653
No 99
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=87.55 E-value=0.14 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceee
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLL 42 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll 42 (256)
+.+++.++++++|++++.+ ++|+.+.+.|++.+
T Consensus 74 v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l 106 (109)
T PRK10650 74 AATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence 4578899999999999995 99999999999875
No 100
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=1 Score=38.44 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=77.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcCC-----CCccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhc
Q 025172 105 PCKYSSTAILSLFGAIQAAILCLATNRN-----HSAWSFK--GKIEIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177 (256)
Q Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~--~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~ 177 (256)
+.|.-++.+++++...+..........- .+..++. ...+..-+. -+ -...-.+-++++++.+.+.--+-
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlpls--vV--fi~mI~fnnlcL~yVgVaFYyvg 134 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLS--VV--FILMISFNNLCLKYVGVAFYYVG 134 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchh--he--eeeehhccceehhhcceEEEEec
Confidence 4678889999999888877776543221 1111111 111111111 11 11223567899999999999999
Q ss_pred hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 178 SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 178 ~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
-.+..+|++++++++++++-+..-..++.+|+.|..+-...+
T Consensus 135 RsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 135 RSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred cchhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 999999999999999999999999999999999987765543
No 101
>PRK11431 multidrug efflux system protein; Provisional
Probab=87.27 E-value=0.16 Score=36.93 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
+.+.++++++++|++++.+ ++|+.+.++|++.+-
T Consensus 68 v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 68 VGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence 4578899999999999995 999999999998863
No 102
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=86.31 E-value=0.17 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172 4 VITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 4 ~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
+.+++.++++++|+++.. |++++.+.+.|++.+-
T Consensus 69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 457889999999999999 4999999999998763
No 103
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=84.25 E-value=14 Score=33.01 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=52.8
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchh--HHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhc
Q 025172 100 IGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKI--EIISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAF 177 (256)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~ 177 (256)
+..+..+++....-.+...++-..+.+....+. ....-... .-.+.-..++++..+...-+.+..|..++..+..+
T Consensus 60 lA~~vG~~~G~Lina~f~~~iEvil~~~al~~G--~~~lvr~Si~gsIm~~~llv~GlslllGglr~~~Q~fN~~~a~~~ 137 (368)
T COG0387 60 LAARVGEPYGSLINALFGNAIEVILIVAALKSG--SPTLVRDSLYGSIMINLLLVVGLSLLLGGLRHKTQPFNPHGAGTY 137 (368)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHHHHHHHHHHHHHcchhhceeecchhhHHHH
Confidence 333444666666666666666555555544432 22211111 11122222332322333334455555555544332
Q ss_pred hh---hHHHHHHHHHHHHh---cccchhhHHHHHHHHHHHHhhhee
Q 025172 178 SP---LVQIMAAMFDIPLL---HERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 178 ~~---l~pv~a~ll~~l~~---~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
.. +.-+.++++--++- +...+..+-.+++.+.+++|....
T Consensus 138 ~~~L~~~~~ialv~P~~~~~~~~~~~~~~~s~~~avv~i~~Y~lfL 183 (368)
T COG0387 138 LALLFTAATIALVLPTFFPYTGGGNFSLGQSLFVAVVLIALYGLFL 183 (368)
T ss_pred HHHHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHHHHHHH
Confidence 22 22223333333322 234456677778888887776653
No 104
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=84.01 E-value=0.28 Score=37.11 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.1
Q ss_pred hHHHHHHHHH--hhcccccccccCCcceeehhhheeccceeee
Q 025172 3 PVITFVIALP--FGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 3 P~~~~l~~~~--~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
+.++.+.++. +++|++++++ ++|+++.++|++++.
T Consensus 85 ~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 85 YALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 3445555553 8999999995 999999999999975
No 105
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=82.03 E-value=2.5 Score=30.56 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=43.6
Q ss_pred HHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhe
Q 025172 160 VGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILL 216 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~ 216 (256)
.+|+.-+++.+-+.+..+ +++.-.++.+.+..+-.|......+.|+.++++|+++..
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 566777888887766544 556778889999875555666679999999999998764
No 106
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.81 E-value=15 Score=30.57 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=53.3
Q ss_pred HHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccc
Q 025172 163 TWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
-+++++.+....+++-+++.+.....-.++||.+++..+....+++++..+...|...
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 4889999999999999999999999999999999999999999999999888887754
No 107
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.62 E-value=2.1 Score=30.91 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 185 AAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 185 a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
-..++++++||++++..+.|.++++.+++..
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3467788999999999999999998887654
No 108
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=77.72 E-value=1.6 Score=37.73 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCC-----CCcc------cccchhHHHHHHHHH
Q 025172 83 LTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRN-----HSAW------SFKGKIEIISVLYAG 151 (256)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~------~~~~~~~~~~ll~~g 151 (256)
|+++.+||+.....+|-..++.--+ ....|=+.++.++..++.-+.-+. .... ...+...+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 3567899999999998887754221 124444444444433333222111 0111 111112233334444
Q ss_pred HHHHHHHHHHHHHHHhccCccchhhch-hhHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHhhhe
Q 025172 152 IVGSGLCYVGLTWCVKKKGPVFTAAFS-PLVQIMAAMFDIPLLHERLH--IGSLLGSITVIIGLYILL 216 (256)
Q Consensus 152 ~~~~~~~~~~~~~a~~~~~~~~~s~~~-~l~pv~a~ll~~l~~~E~i~--~~~~iG~~lii~gi~l~~ 216 (256)
+ .--++-.+..+++...+.+.+-.+. .+.-+++..+.|+ ++.+++ ..-+.|.+++++++++-.
T Consensus 80 v-vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 80 V-VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred H-hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 4 4446666667888877766554332 2333445555554 345554 245557777666665544
No 109
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.05 E-value=8.3 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 185 AAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 185 a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
-..++++.++|++.+..+.|..++..|+++..+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 346788899999999999999999999887653
No 110
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=72.33 E-value=70 Score=28.35 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=95.1
Q ss_pred eeehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 025172 28 KVVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPIQSYIG------ 101 (256)
Q Consensus 28 k~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~~~~a~~~v~~k~~~------ 101 (256)
-++|++++++|+.+... .+..-+ .+ .+.+.++.+..+|.+.++++.+.-|..+.-.....
T Consensus 137 vL~Gv~v~LiGIai~g~-AG~~Ke------~~-------~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a 202 (344)
T PF06379_consen 137 VLLGVAVCLIGIAICGK-AGSMKE------KE-------LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAA 202 (344)
T ss_pred hhhHHHHHHHHHHHHhH-HHHhhh------hh-------hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 48899999999998752 111000 00 00022233456999999999999888877654211
Q ss_pred -hcCCchhH----HHHHHHHHHHHHHHHHHHHh---cCCCC---cccccch---hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025172 102 -KRYPCKYS----STAILSLFGAIQAAILCLAT---NRNHS---AWSFKGK---IEIISVLYAGIVGSGLCYVGLTWCVK 167 (256)
Q Consensus 102 -~~~~~~~~----~~~~~~~~~~i~~~~~~~~~---~~~~~---~~~~~~~---~~~~~ll~~g~~~~~~~~~~~~~a~~ 167 (256)
+...++.. .....+.-+.+.-+..++.. .++.+ .+....+ ......+..|++ =..++.+|.++-.
T Consensus 203 ~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s 281 (344)
T PF06379_consen 203 VAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGES 281 (344)
T ss_pred HHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11111111 22233334444444555432 12221 1111011 123333334442 3456667777777
Q ss_pred ccCc----cchhhchhhHHHHHHHHHHHHhcc------cchhhHHHHHHHHHHHHhhhee
Q 025172 168 KKGP----VFTAAFSPLVQIMAAMFDIPLLHE------RLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 168 ~~~~----~~~s~~~~l~pv~a~ll~~l~~~E------~i~~~~~iG~~lii~gi~l~~~ 217 (256)
+.+. ..-.+.+.+..+++-+++.+ +|| +.-..-++|+++++.++.++-+
T Consensus 282 ~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 282 KLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 7663 34567888899999999976 555 2334457888888888776644
No 111
>PF15102 TMEM154: TMEM154 protein family
Probab=63.67 E-value=9.5 Score=29.31 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=8.0
Q ss_pred HHHHHHHhhheecccccc
Q 025172 206 ITVIIGLYILLWGKNKEM 223 (256)
Q Consensus 206 ~lii~gi~l~~~~~~~~~ 223 (256)
+++++.++++.+.|+|+.
T Consensus 70 lLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHheeEEeeccc
Confidence 344444445554444433
No 112
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=63.56 E-value=7.2 Score=33.42 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=56.9
Q ss_pred HHHHHHHHHhc-cCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccccccc
Q 025172 158 CYVGLTWCVKK-KGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKEMQN 225 (256)
Q Consensus 158 ~~~~~~~a~~~-~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~~~~ 225 (256)
.-.+-|++++. ++...--++-.-.++...+++|++.|.+-+..|+....++.+|+++..+.+.++.+.
T Consensus 77 vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 77 VNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34667788876 555566777888999999999999999999999999999999999999887665544
No 113
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=63.27 E-value=49 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHhhheeccc
Q 025172 197 LHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 197 i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
++..|++...++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 678899999999999887766443
No 114
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=62.45 E-value=1.2e+02 Score=27.53 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.2
Q ss_pred HHHhccCc
Q 025172 164 WCVKKKGP 171 (256)
Q Consensus 164 ~a~~~~~~ 171 (256)
...+..++
T Consensus 357 ~~~~~~~~ 364 (455)
T TIGR00892 357 VLMDLVGA 364 (455)
T ss_pred HHHHHhhH
Confidence 33344444
No 115
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=61.97 E-value=63 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHhhcccccccccCCcceeehhhheeccceee
Q 025172 1 MVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLL 42 (256)
Q Consensus 1 ~~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll 42 (256)
++|+-.+.++.+...+|.+... +.+.+-.+.|.+.+
T Consensus 19 l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 19 MAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred CCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 5788888888887666643332 44555555565544
No 116
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=61.80 E-value=1.2e+02 Score=26.98 Aligned_cols=11 Identities=9% Similarity=-0.381 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 025172 152 IVGSGLCYVGL 162 (256)
Q Consensus 152 ~~~~~~~~~~~ 162 (256)
++..++++.+.
T Consensus 70 ~~~~~~~~~~~ 80 (385)
T PF03547_consen 70 FIIFILGLLLG 80 (385)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 117
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=61.37 E-value=15 Score=27.88 Aligned_cols=16 Identities=13% Similarity=0.592 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhe
Q 025172 201 SLLGSITVIIGLYILL 216 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~ 216 (256)
.++|..++++|++...
T Consensus 89 ~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666654443
No 118
>PRK14397 membrane protein; Provisional
Probab=58.00 E-value=1.1e+02 Score=25.43 Aligned_cols=29 Identities=7% Similarity=-0.262 Sum_probs=14.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 025172 69 PTRKTERWTFGTIALTVGTLLWASWFPIQ 97 (256)
Q Consensus 69 ~~~~~~~~~~G~ll~l~s~~~~a~~~v~~ 97 (256)
|...+-....|--.+++..++-..-.++.
T Consensus 39 ~GaTNv~R~~G~~~gilv~~~D~lKG~la 67 (222)
T PRK14397 39 VGATNVARLCGTKWGVLTLVCDVLKGAVP 67 (222)
T ss_pred chHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 33334444566666666665555444443
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=56.64 E-value=1.6e+02 Score=27.09 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=29.8
Q ss_pred hhchhhHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHhhheeccccccc
Q 025172 175 AAFSPLVQIMAAMFDIPLLHER-LHIGSLLGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~-i~~~~~iG~~lii~gi~l~~~~~~~~~~ 224 (256)
++-..+.|+++.+ +++..+-. -...-.-|++.+++|++++.+.|.+++.
T Consensus 163 NiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 163 NIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred hcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4445566666665 66555432 2233556778888888888776655543
No 120
>PRK11010 ampG muropeptide transporter; Validated
Probab=54.77 E-value=1.8e+02 Score=26.92 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHhccCccchhhchhhHHHHHHHH----HHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 165 CVKKKGPVFTAAFSPLVQIMAAMF----DIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 165 a~~~~~~~~~s~~~~l~pv~a~ll----~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
.-++.+.+..+.++...-+-..+. +++.-.--.+....+..++.+.|+.+..+
T Consensus 345 ~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 345 CNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 344455555565555443333322 33221111223344555555566555543
No 121
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=52.13 E-value=14 Score=27.90 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=21.8
Q ss_pred cchhhchhhHHHHHHHHHHHHhcccc--hhhHHHHHHHHHH
Q 025172 172 VFTAAFSPLVQIMAAMFDIPLLHERL--HIGSLLGSITVII 210 (256)
Q Consensus 172 ~~~s~~~~l~pv~a~ll~~l~~~E~i--~~~~~iG~~lii~ 210 (256)
..++.+.|+.|+++++++.++..--. +...+++.++.++
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLA 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887766532111 4444444444433
No 122
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=50.69 E-value=15 Score=30.13 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=29.0
Q ss_pred ccchhhchhhHHHHHHHHHHHHhcccch-hhHHHHH-HHHHHHHhhhe
Q 025172 171 PVFTAAFSPLVQIMAAMFDIPLLHERLH-IGSLLGS-ITVIIGLYILL 216 (256)
Q Consensus 171 ~~~~s~~~~l~pv~a~ll~~l~~~E~i~-~~~~iG~-~lii~gi~l~~ 216 (256)
+...+.+..+.|..+..++..+-+--.. +.+++|. +++++|+.+..
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777765543333 3466664 66678887774
No 123
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=50.33 E-value=1.6e+02 Score=25.10 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhcC
Q 025172 88 LLWASWFPIQSYIGKRY 104 (256)
Q Consensus 88 ~~~a~~~v~~k~~~~~~ 104 (256)
+.+.+......+..+++
T Consensus 41 ~~~~~~~~~~g~l~dr~ 57 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRS 57 (379)
T ss_pred HHHHhhhhhhhHHHHhh
Confidence 33344444444444544
No 124
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=50.07 E-value=2.2e+02 Score=26.65 Aligned_cols=76 Identities=12% Similarity=-0.009 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCccc------hhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 148 LYAGIVGSGLCYVGLTWCVKKKGPVF------TAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 148 l~~g~~~~~~~~~~~~~a~~~~~~~~------~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
++...++.+.+-.-|+..-+..++.. ++...+..--+.+.+.+..+++.++....+=.++..+-..++.|.+-.
T Consensus 376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCc
Confidence 34444455555555666666555432 222223333344444555567777765444444444444444454444
Q ss_pred cc
Q 025172 222 EM 223 (256)
Q Consensus 222 ~~ 223 (256)
|.
T Consensus 456 ET 457 (485)
T KOG0569|consen 456 ET 457 (485)
T ss_pred cc
Confidence 33
No 125
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=48.06 E-value=13 Score=28.46 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=16.3
Q ss_pred cCccchhhchhhHHHHHHHHHHHH
Q 025172 169 KGPVFTAAFSPLVQIMAAMFDIPL 192 (256)
Q Consensus 169 ~~~~~~s~~~~l~pv~a~ll~~l~ 192 (256)
-+....+.+.|+.|+++++++.++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677788888887777654
No 126
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=48.00 E-value=2.3e+02 Score=26.12 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHhhheecccc
Q 025172 177 FSPLVQIMAAMFDIPLL-HERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 177 ~~~l~pv~a~ll~~l~~-~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
.....++++.++..++. ... ......|.+++.+|+.++.+.+++
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666554443 322 234566888888998777664443
No 127
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.50 E-value=2.5e+02 Score=26.23 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHHHHHH
Q 025172 106 CKYSSTAILSLFGAIQA 122 (256)
Q Consensus 106 ~~~~~~~~~~~~~~i~~ 122 (256)
.|......+..++.++.
T Consensus 330 ~P~~a~~~~~~i~~l~~ 346 (507)
T TIGR00910 330 VPVPLVIIQGIITSIAG 346 (507)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 45555555555554433
No 128
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.05 E-value=6.7 Score=33.59 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 025172 78 FGTIALTVGT 87 (256)
Q Consensus 78 ~G~ll~l~s~ 87 (256)
.|+++.++.+
T Consensus 107 ~Gi~~l~l~~ 116 (381)
T PF05297_consen 107 VGIVILFLCC 116 (381)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5655444443
No 129
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=44.60 E-value=9.3 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 6 TFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 6 ~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
..+..+.+-+++++... ++|..++++|+.++.+
T Consensus 71 Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 71 SLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 45566777889999997 9999999999999874
No 130
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=43.35 E-value=99 Score=26.84 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=40.0
Q ss_pred eehhhheeccceeeeeecCCccCCCCCchhhhhhhhcccCCCCCCchhHHHHHHHHHHHHHHHHHHHH-------H-HHh
Q 025172 29 VVGTLVCIGGAMLLTLYKGMPLFDHSYSQAETAINVMHMHPTRKTERWTFGTIALTVGTLLWASWFPI-------Q-SYI 100 (256)
Q Consensus 29 ~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~s~~~~a~~~v~-------~-k~~ 100 (256)
+.++.++..|+..+. ..-+ .........|..+..++.+.|....+. . |..
T Consensus 7 ~f~~~mGtg~l~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~ 64 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLL-YLLP---------------------YHFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAF 64 (330)
T ss_dssp GGHHHHHHHHHHHHH-HTTT---------------------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHH---------------------HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777788887777663 2111 112334457777777777777662222 2 223
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHH
Q 025172 101 GKRYPCKYSSTAILSLFGAIQAAIL 125 (256)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (256)
.++..+|....++.....+...+..
T Consensus 65 ~~el~~p~~~~f~~t~~m~~~~l~~ 89 (330)
T PF03595_consen 65 KAELRHPVRSSFFPTFPMALMLLAA 89 (330)
T ss_dssp HHHHHSTTGGGGGGHHHHHHHHHHH
T ss_pred HHHhcCCcccchHHHHHHHHHHHHH
Confidence 3333455665655555544444443
No 131
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=42.91 E-value=62 Score=27.44 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=43.2
Q ss_pred cceeehhhheeccceeeeeecCCccCC------CC-Cchhhhhhhhc----ccCCC----CCCchhHHHHHHHHHHHHHH
Q 025172 26 KAKVVGTLVCIGGAMLLTLYKGMPLFD------HS-YSQAETAINVM----HMHPT----RKTERWTFGTIALTVGTLLW 90 (256)
Q Consensus 26 ~~k~~g~~l~~~Gi~ll~~~~~~~~~~------~~-~~~~~~~~~~~----~~~~~----~~~~~~~~G~ll~l~s~~~~ 90 (256)
+..++|++++++|..+..+.+....+. .+ ..++....++. +.++. +...+...|..++++++++|
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvly 195 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLY 195 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHH
Confidence 445889999999988877654332111 00 11100000000 00000 01124678999999999999
Q ss_pred HHHHHHHHHhhhc
Q 025172 91 ASWFPIQSYIGKR 103 (256)
Q Consensus 91 a~~~v~~k~~~~~ 103 (256)
+...+=...+.++
T Consensus 196 Gs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 196 GSNFVPVIYIQDH 208 (254)
T ss_pred hcccchHHHHHhC
Confidence 9887776666554
No 132
>PRK02237 hypothetical protein; Provisional
Probab=41.49 E-value=11 Score=27.43 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 7 FVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 7 ~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
.+..+.+-++|++... ++|..++++|+.++.+
T Consensus 74 l~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 74 LLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 4566777889999997 9999999999988864
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.88 E-value=18 Score=26.95 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhe
Q 025172 203 LGSITVIIGLYILL 216 (256)
Q Consensus 203 iG~~lii~gi~l~~ 216 (256)
+|++.+++.+++..
T Consensus 75 aGvIg~Illi~y~i 88 (122)
T PF01102_consen 75 AGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444333333
No 134
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=40.58 E-value=2.3e+02 Score=24.78 Aligned_cols=34 Identities=6% Similarity=-0.258 Sum_probs=18.9
Q ss_pred hchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 025172 176 AFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVII 210 (256)
Q Consensus 176 ~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~ 210 (256)
.+.++.|++...+++. +---+..+-..+.+..++
T Consensus 228 ~M~~~mP~m~~~~~~~-~Pagl~LYW~~snl~~i~ 261 (304)
T PRK03449 228 LALWVFPLGVLVGGPF-LPLAILLYWVSNNIWTFG 261 (304)
T ss_pred HHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4578889988877754 222333344444444443
No 135
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=39.94 E-value=10 Score=27.46 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=21.5
Q ss_pred HHHHHHhhcccccccccCCcceeehhhheecccee
Q 025172 7 FVIALPFGLETVDIKGISGKAKVVGTLVCIGGAML 41 (256)
Q Consensus 7 ~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~l 41 (256)
+.+++++++|++++.. ..|.++.+.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~------l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNY------LWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHH------HHHHHHHHHhhhe
Confidence 5677889999999995 7776666555544
No 136
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.68 E-value=3.1e+02 Score=25.30 Aligned_cols=124 Identities=11% Similarity=-0.013 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGL 157 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 157 (256)
.|.++..+.-+++-+.-++.| ++. +|+.....-+..+...++.+++ .|+ ..+ .+..++.... +.+
T Consensus 300 YgiLFI~LTF~~fflfE~~~~---~~i-HpiQY~LVGlAl~lFYlLLLSl-SEh----i~F----~~AYliAa~a--~i~ 364 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK---LRI-HPIQYLLVGLALVLFYLLLLSL-SEH----IGF----NLAYLIAALA--CIG 364 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHHHHHHHHH-Hhh----hch----HHHHHHHHHH--HHH
Confidence 566666666555555555554 343 6676655555444444444443 221 111 1333332222 222
Q ss_pred HHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 158 CYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 158 ~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
--.+|..++-+..-.-..+...+.-+.+.+...+ --|.-.....-.+++++++++++..
T Consensus 365 Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL-q~EdyALL~GSl~LF~iLa~vM~~T 423 (430)
T PF06123_consen 365 LISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL-QSEDYALLMGSLLLFIILALVMYLT 423 (430)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhee
Confidence 3334444444433333444455555666666653 3344433333334444555555543
No 137
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=38.54 E-value=54 Score=17.86 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHh
Q 025172 198 HIGSLLGSITVIIGLY 213 (256)
Q Consensus 198 ~~~~~iG~~lii~gi~ 213 (256)
++..++|.+++..+.+
T Consensus 11 ~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGL 26 (34)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666644444333
No 138
>PRK15049 L-asparagine permease; Provisional
Probab=38.00 E-value=3.4e+02 Score=25.29 Aligned_cols=8 Identities=0% Similarity=-0.625 Sum_probs=3.1
Q ss_pred chhhHHHH
Q 025172 197 LHIGSLLG 204 (256)
Q Consensus 197 i~~~~~iG 204 (256)
.+...+++
T Consensus 447 ~~~~~~~~ 454 (499)
T PRK15049 447 GTYTIAAL 454 (499)
T ss_pred hHHHHHHH
Confidence 34333333
No 139
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=37.57 E-value=25 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.4
Q ss_pred cchhhHHHHHHHHHHHHhhheeccccc
Q 025172 196 RLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 196 ~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
..++..++|.++++.|+.++..++.++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 467889999999999999987655443
No 140
>PF15471 TMEM171: Transmembrane protein family 171
Probab=37.33 E-value=30 Score=29.45 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHhhheecccccccc
Q 025172 199 IGSLLGSITVIIGLYILLWGKNKEMQN 225 (256)
Q Consensus 199 ~~~~iG~~lii~gi~l~~~~~~~~~~~ 225 (256)
..|++|-+++++|+.......-|++++
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~n 187 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRNN 187 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeeccC
Confidence 568999999999988777665444433
No 141
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=36.78 E-value=35 Score=20.06 Aligned_cols=17 Identities=24% Similarity=0.950 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhheeccc
Q 025172 204 GSITVIIGLYILLWGKN 220 (256)
Q Consensus 204 G~~lii~gi~l~~~~~~ 220 (256)
|.++++++++++.+.++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 45555666666654443
No 142
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=35.44 E-value=19 Score=26.94 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025172 146 SVLYAGIVGSGLCYVG 161 (256)
Q Consensus 146 ~ll~~g~~~~~~~~~~ 161 (256)
.++..|++.+.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 3455677777777665
No 143
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=35.08 E-value=3.4e+02 Score=24.44 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHH--HHhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 025172 84 TVGTLLWASWFPIQ--SYIGKRYPCKYSSTAILSLFGAIQAAILC 126 (256)
Q Consensus 84 l~s~~~~a~~~v~~--k~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 126 (256)
++..+.++...+.- .....|...|+........+..+-...+.
T Consensus 46 ~~~~i~~~~~~~v~hAe~lA~~~GeP~GtliLtlsv~~iEv~li~ 90 (366)
T PRK10599 46 ALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLIS 90 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 33445555544442 23444555677666666666666444433
No 144
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=34.64 E-value=3.1e+02 Score=23.95 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=14.7
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 185 AAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 185 a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
..+.+++.-.-..+...++++++.++++.+...
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344454432222334444555555555544433
No 145
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=34.59 E-value=3.7e+02 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=16.9
Q ss_pred cchhhHHHHHHHHHHHHhhheec
Q 025172 196 RLHIGSLLGSITVIIGLYILLWG 218 (256)
Q Consensus 196 ~i~~~~~iG~~lii~gi~l~~~~ 218 (256)
.-+...++|.++.++.+.....+
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~r 304 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFR 304 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 45567789998888887666554
No 146
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=34.11 E-value=3.3e+02 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhh
Q 025172 201 SLLGSITVIIGLYIL 215 (256)
Q Consensus 201 ~~iG~~lii~gi~l~ 215 (256)
..+++++.+.++++.
T Consensus 372 f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 372 YLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666665554
No 147
>PF12832 MFS_1_like: MFS_1 like family
Probab=32.64 E-value=1.4e+02 Score=19.98 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhchhhHHHHHHHHHHH
Q 025172 144 IISVLYAGIVGSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIP 191 (256)
Q Consensus 144 ~~~ll~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l 191 (256)
+...++.+..++...|.-...-..-.++.+++++..+.|....+...+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl 54 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPL 54 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555577777777666666788888888888888777765543
No 148
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=32.64 E-value=47 Score=21.25 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=10.7
Q ss_pred HHHHHHHHhhheecc
Q 025172 205 SITVIIGLYILLWGK 219 (256)
Q Consensus 205 ~~lii~gi~l~~~~~ 219 (256)
++++++|+++-..+.
T Consensus 11 iLl~lvG~i~n~iK~ 25 (63)
T PF13980_consen 11 ILLILVGMIINGIKE 25 (63)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788887776544
No 149
>TIGR00893 2A0114 d-galactonate transporter.
Probab=32.28 E-value=3.2e+02 Score=23.25 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhcC
Q 025172 92 SWFPIQSYIGKRY 104 (256)
Q Consensus 92 ~~~v~~k~~~~~~ 104 (256)
+.........+++
T Consensus 44 ~~~~~~g~l~d~~ 56 (399)
T TIGR00893 44 VGQFPGGWLLDRF 56 (399)
T ss_pred HHHHhHHHHHHhc
Confidence 3333333444443
No 150
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.99 E-value=22 Score=27.60 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=9.8
Q ss_pred hhhchhhHHHHHHHHHHH
Q 025172 174 TAAFSPLVQIMAAMFDIP 191 (256)
Q Consensus 174 ~s~~~~l~pv~a~ll~~l 191 (256)
.+.+.|+.|+++++.+.+
T Consensus 77 aa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665543
No 151
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=31.67 E-value=61 Score=18.89 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHhh
Q 025172 182 QIMAAMFDIPLLHERLHIGSLLGSITVIIGLYI 214 (256)
Q Consensus 182 pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l 214 (256)
|+.+++.|++++=-+=-...++|.-+++.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665444445567777788777643
No 152
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=31.62 E-value=4.1e+02 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHH-hcccchhhHHHHHHHHHHHHhhheecccc
Q 025172 180 LVQIMAAMFDIPL-LHERLHIGSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 180 l~pv~a~ll~~l~-~~E~i~~~~~iG~~lii~gi~l~~~~~~~ 221 (256)
..+..+.++.... +.-.. ....+|.++++.|+.++.+.+++
T Consensus 392 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 392 LIGLVALLYAVWLIYAAGL-KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444333 33332 35788888889998888664443
No 153
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=36 Score=24.57 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 7 FVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 7 ~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
.+..+++=+.++++.. ++|..+|++|+.++.+
T Consensus 73 L~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 73 LAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 3445566678888887 9999999999888864
No 154
>PHA03049 IMV membrane protein; Provisional
Probab=30.25 E-value=54 Score=21.53 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhheecc
Q 025172 201 SLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~~~~ 219 (256)
.+++++++++|++++-.-+
T Consensus 6 ~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777877775433
No 155
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=30.00 E-value=37 Score=27.65 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=34.6
Q ss_pred hhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 174 TAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 174 ~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
....-+..+++..+.++...+++.+..++++.+++..|+....+.+
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence 3445566778888888888888888888888888888887655443
No 156
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.79 E-value=2.8e+02 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025172 145 ISVLYAGIVGSGLCYVGLTWCV 166 (256)
Q Consensus 145 ~~ll~~g~~~~~~~~~~~~~a~ 166 (256)
-.++.+.++.+++..++...+.
T Consensus 29 r~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 29 RMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556666665555555553
No 157
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=29.72 E-value=3e+02 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=20.3
Q ss_pred HHHHHHHhcccchhhHHHHHHHHH--HHHhhhee
Q 025172 186 AMFDIPLLHERLHIGSLLGSITVI--IGLYILLW 217 (256)
Q Consensus 186 ~ll~~l~~~E~i~~~~~iG~~lii--~gi~l~~~ 217 (256)
-.+|..++++..-+...+|..+.+ +|.+....
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344677777777777788876655 45544443
No 158
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.44 E-value=53 Score=21.66 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhhheecccc
Q 025172 200 GSLLGSITVIIGLYILLWGKNK 221 (256)
Q Consensus 200 ~~~iG~~lii~gi~l~~~~~~~ 221 (256)
.-+++++++++|++++..-+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3467777888887777544333
No 159
>PRK13664 hypothetical protein; Provisional
Probab=28.71 E-value=67 Score=20.42 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhheeccc
Q 025172 202 LLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 202 ~iG~~lii~gi~l~~~~~~ 220 (256)
|+=++++++|+++-..+..
T Consensus 9 Wilill~lvG~i~N~iK~l 27 (62)
T PRK13664 9 WILVLVFLVGVLLNVIKDL 27 (62)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456778888877766543
No 160
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=28.17 E-value=3.2e+02 Score=25.63 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCccchhhchhhHHHHHHHHHHHHh------------cccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 157 LCYVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLL------------HERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~------------~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
+-+.+|.+-..+-++....+.....-+.-++++-.++ +-+++.....|+.+-+++.++...-.+.+
T Consensus 434 ivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~~~ 511 (529)
T COG4147 434 IVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTKPP 511 (529)
T ss_pred hhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccCCCC
Confidence 4445555555655665555555555555555554333 33566677888888888887777655433
No 161
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.02 E-value=33 Score=20.57 Aligned_cols=16 Identities=19% Similarity=0.438 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHh
Q 025172 198 HIGSLLGSITVIIGLY 213 (256)
Q Consensus 198 ~~~~~iG~~lii~gi~ 213 (256)
+|.+++=.++|++|++
T Consensus 3 ~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIF 18 (49)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444555555543
No 162
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=27.36 E-value=4.9e+02 Score=23.88 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhccCccchhhchhhHHHHH
Q 025172 154 GSGLCYVGLTWCVKKKGPVFTAAFSPLVQIMA 185 (256)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~a 185 (256)
++++.+...+-.....|+...+.++.-+=+-+
T Consensus 119 ~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aG 150 (437)
T TIGR00939 119 GMALLQGSLFGLAGVFPSTYSSAVMSGQGLAG 150 (437)
T ss_pred hhhhhcccchhhcccCCHHHHHHHHhcchhHH
Confidence 34444444433444455555444444443333
No 163
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.31 E-value=50 Score=22.14 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025172 202 LLGSITVI 209 (256)
Q Consensus 202 ~iG~~lii 209 (256)
++|+.+++
T Consensus 9 i~Gm~iVF 16 (79)
T PF04277_consen 9 IIGMGIVF 16 (79)
T ss_pred HHHHHHHH
Confidence 33433333
No 164
>PRK11469 hypothetical protein; Provisional
Probab=27.27 E-value=55 Score=26.32 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=26.9
Q ss_pred hhchhhHHHHHHHHHHHHhcccchhhHHHHH-HHHHHHHhhhe
Q 025172 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGS-ITVIIGLYILL 216 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~-~lii~gi~l~~ 216 (256)
+.++.+.|..+...+-.+-+-...+..|+|. +++.+|..+..
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777655444444567775 55667887774
No 165
>PRK11715 inner membrane protein; Provisional
Probab=27.16 E-value=5e+02 Score=23.97 Aligned_cols=46 Identities=7% Similarity=-0.001 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCL 127 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 127 (256)
.|+++..+.-+++-+.-++.| .+ -+|+.....-+..+...++.+++
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---~~-iHpiQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---LR-IHPVQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---ce-ecHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555555555543 34 37777666555555555555543
No 166
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.87 E-value=31 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHhhhee
Q 025172 198 HIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 198 ~~~~~iG~~lii~gi~l~~~ 217 (256)
|...++|.++.++|..+...
T Consensus 3 N~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888777654
No 167
>PF14851 FAM176: FAM176 family
Probab=26.34 E-value=1.8e+02 Score=22.58 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=14.7
Q ss_pred HHHHHHHhccCccchhhchhhHHHHHHH
Q 025172 160 VGLTWCVKKKGPVFTAAFSPLVQIMAAM 187 (256)
Q Consensus 160 ~~~~~a~~~~~~~~~s~~~~l~pv~a~l 187 (256)
++-.|+.-+-.|-.++++..+..-++++
T Consensus 8 sLaaya~I~~~PE~~aLYFv~gVC~GLl 35 (153)
T PF14851_consen 8 SLAAYAHIRDNPERFALYFVSGVCAGLL 35 (153)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3444555555666666665544444443
No 168
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.21 E-value=23 Score=30.46 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCccchhhchhhH
Q 025172 155 SGLCYVGLTWCVKKKGPVFTAAFSPLV 181 (256)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~s~~~~l~ 181 (256)
-++.-++|.+.+++.+++.-+++.++-
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCL 144 (381)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345667778899999998877765543
No 169
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=26.09 E-value=6.6e+02 Score=24.97 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 025172 85 VGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILC 126 (256)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 126 (256)
++++......++.-.+..++. .-......++++++..+...
T Consensus 603 l~~l~~i~G~il~g~L~Dr~G-Rr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 603 LGTLAVLPGNIVSALLMDKIG-RLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444442 22233334444444444433
No 170
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=26.08 E-value=1.7e+02 Score=20.42 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhee
Q 025172 142 IEIISVLYAGIVGSGLCYVGLTWCVKKK-GPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLW 217 (256)
Q Consensus 142 ~~~~~ll~~g~~~~~~~~~~~~~a~~~~-~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~ 217 (256)
..|...+.+|++..++.+...+|..... .+ ..+-=++.-.+|..++++|..+..+
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~i~p---------------------i~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQIPP---------------------IPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCCCCC---------------------cccccchHHHHHHHHHHHHHHHHcc
Confidence 4577777788877777777766655543 11 1111146678899999999877653
No 171
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.99 E-value=2.7e+02 Score=23.69 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=28.7
Q ss_pred hhchhhHHHHHHHHHHHHhcc-----cchhhHHHHHHHHHHHHhhheeccc
Q 025172 175 AAFSPLVQIMAAMFDIPLLHE-----RLHIGSLLGSITVIIGLYILLWGKN 220 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E-----~i~~~~~iG~~lii~gi~l~~~~~~ 220 (256)
..+..+..+.=.++..+=-++ -+|..|+++..++++|+++..+.++
T Consensus 208 ~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~~ 258 (269)
T PRK12437 208 ALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRRK 258 (269)
T ss_pred HHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555321111 2678899999999999887755443
No 172
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=25.78 E-value=5.2e+02 Score=23.64 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhe
Q 025172 202 LLGSITVIIGLYILL 216 (256)
Q Consensus 202 ~iG~~lii~gi~l~~ 216 (256)
+.|+++++.++....
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445455554444433
No 173
>PRK09579 multidrug efflux protein; Reviewed
Probab=25.54 E-value=2.5e+02 Score=28.95 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 183 IMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 183 v~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
+.+.+++.++.+.+++...++|+ ++++|++.-
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G~-i~L~GivVn 913 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVGL-VTLIGLISK 913 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHHH-HHHHHHHHc
Confidence 45677777788999999999884 455666544
No 174
>PRK11383 hypothetical protein; Provisional
Probab=25.53 E-value=3.1e+02 Score=21.03 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----Cccc--hhhchh
Q 025172 106 CKYSSTAILSLFGAIQAAILCLATNRNHSAWSFKGKIEIISVLYAGIVGSGLCYVGLTWCVKKK----GPVF--TAAFSP 179 (256)
Q Consensus 106 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~a~~~~----~~~~--~s~~~~ 179 (256)
..+....|..++.++.+..+.+.... ..+.........+..|+++. ..+-+..+.- +++. .++...
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLwnA~----~~LsEKGyY~~vl~lglF~a----vs~QK~vRD~~egi~vt~~f~~~cw~ 81 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLWNAE----MQLNEKGYYFAVLVLGLFSA----ASYQKTVRDKYEGIPTTSIYYMTCLT 81 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----cccCcccHHHHHHHHHHHHH----HHHHHHHhhcccCCChhHHHHHHHHH
Confidence 44666667777766666666654331 22223344555666666443 3334555543 3222 233333
Q ss_pred hHHHHHHHHHHHHhcccchhh--HHHH--HHHHHHHHhhh
Q 025172 180 LVQIMAAMFDIPLLHERLHIG--SLLG--SITVIIGLYIL 215 (256)
Q Consensus 180 l~pv~a~ll~~l~~~E~i~~~--~~iG--~~lii~gi~l~ 215 (256)
..-+-..++.+=++|.++.+. -+-+ ..+.+.|.+..
T Consensus 82 a~l~~i~LL~iGLwNA~l~lsEKGfY~~af~lsLFgai~v 121 (145)
T PRK11383 82 VFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAV 121 (145)
T ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 333333344444566665544 2333 34445555444
No 175
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=25.35 E-value=57 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=6.4
Q ss_pred HHHHHHHhhheecc
Q 025172 206 ITVIIGLYILLWGK 219 (256)
Q Consensus 206 ~lii~gi~l~~~~~ 219 (256)
+++++|+.+....|
T Consensus 12 v~~lLg~~I~~~~K 25 (50)
T PF12606_consen 12 VMGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHHhh
Confidence 34445554554433
No 176
>PRK09577 multidrug efflux protein; Reviewed
Probab=25.26 E-value=2.5e+02 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 025172 180 LVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYIL 215 (256)
Q Consensus 180 l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~ 215 (256)
---+++.+++..++|.+++...++|++ +++|++.-
T Consensus 900 Pl~l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVn 934 (1032)
T PRK09577 900 PLGVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAK 934 (1032)
T ss_pred hHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHc
Confidence 333457788888899999999999987 66777554
No 177
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=24.87 E-value=2e+02 Score=18.62 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025172 77 TFGTIALTVGTLLWASWFPIQSYIGK 102 (256)
Q Consensus 77 ~~G~ll~l~s~~~~a~~~v~~k~~~~ 102 (256)
..+.++++++.+|+.+++....+..+
T Consensus 5 ~l~~~~~llg~~~l~i~~~~~syVd~ 30 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFIFNIIGSYVDE 30 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcccceECC
Confidence 47778888888888888887665554
No 178
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=24.69 E-value=5.4e+02 Score=23.45 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---cCccchhhchhhHHHHHHHHHHHHhccc---------------chhhHHHHHHHH
Q 025172 147 VLYAGIVGSGLCYVGLTWCVKK---KGPVFTAAFSPLVQIMAAMFDIPLLHER---------------LHIGSLLGSITV 208 (256)
Q Consensus 147 ll~~g~~~~~~~~~~~~~a~~~---~~~~~~s~~~~l~pv~a~ll~~l~~~E~---------------i~~~~~iG~~li 208 (256)
.+.+|+++..+++....+..++ -++.-+-.+=..-=+++.++.-++-.+. .=..|++|++.+
T Consensus 282 A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~ 361 (403)
T TIGR00836 282 AIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAI 361 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHH
Confidence 3445666766666655433333 3444443333333344544444443321 112488887665
Q ss_pred H
Q 025172 209 I 209 (256)
Q Consensus 209 i 209 (256)
+
T Consensus 362 ~ 362 (403)
T TIGR00836 362 I 362 (403)
T ss_pred H
Confidence 4
No 179
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=24.29 E-value=69 Score=25.23 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 025172 76 WTFGTIALTVGTLLWASWFPIQS 98 (256)
Q Consensus 76 ~~~G~ll~l~s~~~~a~~~v~~k 98 (256)
...|+.+-++..=|......+..
T Consensus 101 r~LGIfLPLITTNCaVLgvaLln 123 (193)
T COG4657 101 RLLGIFLPLITTNCAVLGVALLN 123 (193)
T ss_pred HHHHHhhhhHhhchHHHHHHHHH
Confidence 34677776666655555555443
No 180
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=24.16 E-value=43 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=12.8
Q ss_pred eehhhheeccceee
Q 025172 29 VVGTLVCIGGAMLL 42 (256)
Q Consensus 29 ~~g~~l~~~Gi~ll 42 (256)
++|+++.+.|+.+.
T Consensus 99 ~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 99 WLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHcCeeee
Confidence 99999999999875
No 181
>PTZ00207 hypothetical protein; Provisional
Probab=24.14 E-value=6.5e+02 Score=24.24 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Q 025172 91 ASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAIL 125 (256)
Q Consensus 91 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (256)
+...+..-.+.++++ +........+..++..+..
T Consensus 75 g~~~lp~G~L~Dr~G-~R~vllig~ll~~iG~ll~ 108 (591)
T PTZ00207 75 GYFLLPYSFIYDYLG-PRPIFVLSMTVFCLGTLLF 108 (591)
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHH
Confidence 333334445555543 3434444444444433333
No 182
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=23.82 E-value=6.1e+02 Score=23.81 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=34.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh--HHHHHHHHHHHHHHHHHHHH
Q 025172 73 TERWTFGTIALTVGTLLWASWFPIQSYIGKRYPCKY--SSTAILSLFGAIQAAILCLA 128 (256)
Q Consensus 73 ~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 128 (256)
+.+..+|.+....+.+.-....++.+++.+..++.. ......+..++.+.++..+.
T Consensus 283 ~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 283 NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 345667888888888888888888888777554322 23333444445455444443
No 183
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=23.77 E-value=1.2e+02 Score=24.62 Aligned_cols=9 Identities=0% Similarity=-0.466 Sum_probs=3.8
Q ss_pred HHHhcccch
Q 025172 190 IPLLHERLH 198 (256)
Q Consensus 190 ~l~~~E~i~ 198 (256)
.+..|...+
T Consensus 110 Rl~~G~VvD 118 (191)
T PRK14789 110 RIRQGYVVD 118 (191)
T ss_pred HHhcCceEE
Confidence 344444433
No 184
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.18 E-value=44 Score=27.77 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhheeccccccc
Q 025172 203 LGSITVIIGLYILLWGKNKEMQ 224 (256)
Q Consensus 203 iG~~lii~gi~l~~~~~~~~~~ 224 (256)
.|+++.++.+.+..+.|+|++.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777766555433
No 185
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.16 E-value=1.1e+02 Score=30.26 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHHHHhc
Q 025172 177 FSPLVQIMAAMFDIPLLH 194 (256)
Q Consensus 177 ~~~l~pv~a~ll~~l~~~ 194 (256)
+..+-|+++.+++-+.++
T Consensus 281 ~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 281 MAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 445567777777766654
No 186
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.82 E-value=40 Score=21.67 Aligned_cols=17 Identities=35% Similarity=0.778 Sum_probs=14.0
Q ss_pred eeehhhheeccceeeee
Q 025172 28 KVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 28 k~~g~~l~~~Gi~ll~~ 44 (256)
|.+|+++.+.|+.++.+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 47888999999988864
No 187
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=22.70 E-value=1.1e+02 Score=21.70 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhheec
Q 025172 203 LGSITVIIGLYILLWG 218 (256)
Q Consensus 203 iG~~lii~gi~l~~~~ 218 (256)
+|+++++=+.+...|+
T Consensus 51 ~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 51 VGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555443333343
No 188
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.36 E-value=1.2e+02 Score=19.45 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=21.9
Q ss_pred ccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 025172 171 PVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITV 208 (256)
Q Consensus 171 ~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~li 208 (256)
+...+.++.+.|..+..++..+-+..-+..+++|.++.
T Consensus 26 ~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 26 ALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777776665533344566665443
No 189
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=22.02 E-value=3.5e+02 Score=20.34 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 025172 80 TIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILC 126 (256)
Q Consensus 80 ~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 126 (256)
.--++++.++|+.|..-.-...|+++ ..++..=...|+++....+
T Consensus 78 ~~GallGl~~YgtYdlTN~Atlk~W~--~~~~liD~~WG~~lt~~sa 122 (128)
T PF09945_consen 78 LYGALLGLFAYGTYDLTNLATLKDWP--LKVTLIDIAWGTFLTALSA 122 (128)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHCCCC--ccHHHHHHhHHHHHHHHHH
Confidence 34567888999999999988888874 4555555666666555544
No 190
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=21.94 E-value=4.9e+02 Score=22.02 Aligned_cols=19 Identities=0% Similarity=-0.225 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPI 96 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~ 96 (256)
...+.++.-+.-+-+|.+.
T Consensus 74 ~sl~~g~~la~P~ilyqiw 92 (258)
T PRK10921 74 LTFMVSLILSAPVILYQVW 92 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555554
No 191
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=21.72 E-value=3.7e+02 Score=22.46 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=24.6
Q ss_pred ccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 025172 171 PVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVI 209 (256)
Q Consensus 171 ~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii 209 (256)
......+....-++..+....++|.+++...+.|.++++
T Consensus 123 ~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~i 161 (246)
T TIGR00966 123 FALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTII 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHH
Confidence 334444444445555555566689999988888766554
No 192
>COG1971 Predicted membrane protein [Function unknown]
Probab=21.58 E-value=1.1e+02 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=25.7
Q ss_pred hhchhhHHHHHHHHHHHHhcccchhhHHHHH-HHHHHHHhhhe
Q 025172 175 AAFSPLVQIMAAMFDIPLLHERLHIGSLLGS-ITVIIGLYILL 216 (256)
Q Consensus 175 s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~-~lii~gi~l~~ 216 (256)
+.+....|+++-..+.++=+-.-.+-.|+|. +++++|+.+..
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777766666544333445576764 66778887763
No 193
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.13 E-value=1.2e+02 Score=22.74 Aligned_cols=11 Identities=9% Similarity=-0.378 Sum_probs=6.5
Q ss_pred HHHhcccchhh
Q 025172 190 IPLLHERLHIG 200 (256)
Q Consensus 190 ~l~~~E~i~~~ 200 (256)
|+|.-|..+.|
T Consensus 25 W~fR~ED~tpW 35 (125)
T PF15048_consen 25 WFFRVEDATPW 35 (125)
T ss_pred HheecCCCCCc
Confidence 45556666655
No 194
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.89 E-value=1.8e+02 Score=16.64 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQ 97 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~ 97 (256)
.-.++-++.+..|+.|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 55677888999999998874
No 195
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=64 Score=20.82 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhheeccccc
Q 025172 201 SLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~~~~~~~ 222 (256)
-.+-+.++.+|++...+.+.++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccch
Confidence 3444555666666665554433
No 196
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=20.39 E-value=6.4e+02 Score=22.74 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hccCccchhhchhhHHHHHHHHHHHHhcccc----------------hhhHHHHHHH
Q 025172 147 VLYAGIVGSGLCYVGLTWCV---KKKGPVFTAAFSPLVQIMAAMFDIPLLHERL----------------HIGSLLGSIT 207 (256)
Q Consensus 147 ll~~g~~~~~~~~~~~~~a~---~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i----------------~~~~~iG~~l 207 (256)
.+.+|+++..+.+....+.. +.-++..+-.+-..-=+++.++.-++-.+.. -..|++|.+.
T Consensus 277 A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~ 356 (399)
T PF00909_consen 277 ALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVV 356 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHH
Confidence 34456666666665554333 3344666666666666777777766655542 2467777766
Q ss_pred HHH
Q 025172 208 VII 210 (256)
Q Consensus 208 ii~ 210 (256)
++.
T Consensus 357 ~~~ 359 (399)
T PF00909_consen 357 ILA 359 (399)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
Done!