Query 025172
Match_columns 256
No_of_seqs 148 out of 1752
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 3E-12 1E-16 96.9 6.4 71 149-219 34-105 (137)
2 3b5d_A Multidrug transporter E 98.9 1.1E-08 3.9E-13 74.4 11.3 71 149-219 34-105 (110)
3 2i68_A Protein EMRE; transmemb 95.2 0.0022 7.6E-08 48.0 -0.9 37 2-44 67-103 (137)
4 3b5d_A Multidrug transporter E 95.0 0.0025 8.7E-08 45.8 -1.1 36 2-43 67-102 (110)
5 1pw4_A Glycerol-3-phosphate tr 61.7 73 0.0025 26.9 13.8 12 161-172 367-378 (451)
6 4aps_A DI-OR tripeptide H+ sym 58.1 90 0.0031 26.8 11.5 12 161-172 407-418 (491)
7 3l1l_A Arginine/agmatine antip 52.6 34 0.0012 29.5 7.0 46 177-222 386-431 (445)
8 2zxe_G FXYD10, phospholemman-l 45.4 12 0.0004 24.2 2.0 22 201-222 24-45 (74)
9 3rko_J NADH-quinone oxidoreduc 44.8 1E+02 0.0035 23.6 11.7 33 186-218 127-161 (184)
10 4djk_A Probable glutamate/gamm 28.4 2.9E+02 0.01 23.9 10.3 20 198-217 444-464 (511)
11 4aps_A DI-OR tripeptide H+ sym 27.7 2.8E+02 0.0096 23.5 14.2 25 78-103 56-80 (491)
12 2jo1_A Phospholemman; FXYD1, N 25.6 18 0.00063 23.0 0.5 19 201-219 21-39 (72)
13 1pw4_A Glycerol-3-phosphate tr 25.2 2.9E+02 0.01 22.9 13.7 18 87-104 72-89 (451)
14 2jp3_A FXYD domain-containing 24.8 23 0.00077 22.4 0.7 19 201-219 22-40 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.30 E-value=3e-12 Score=96.86 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
..++++++++|.+|++++++++++++..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999888 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.94 E-value=1.1e-08 Score=74.41 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccchhhc-hhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheecc
Q 025172 149 YAGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 149 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~ 219 (256)
..++++.+++|.++.+++++.|.+.+..+ ..+.|+++.+++++++||+++..+++|.++|++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666788999999999999999999877 899999999999999999999999999999999999886643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.22 E-value=0.0022 Score=47.96 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeeee
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 44 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~~ 44 (256)
.|++++++++++++|++++.+ ++|+++.++|++++..
T Consensus 67 ~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 67 GIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 599999999999999999996 9999999999998853
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.02 E-value=0.0025 Score=45.77 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=33.6
Q ss_pred chHHHHHHHHHhhcccccccccCCcceeehhhheeccceeee
Q 025172 2 VPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLT 43 (256)
Q Consensus 2 ~P~~~~l~~~~~~~ek~~~~~~~~~~k~~g~~l~~~Gi~ll~ 43 (256)
.|++++++++++++|++++.+ ++|+.+.+.|++++.
T Consensus 67 ~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 67 GIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 589999999999999999995 999999999999875
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=61.71 E-value=73 Score=26.87 Aligned_cols=12 Identities=0% Similarity=-0.382 Sum_probs=7.0
Q ss_pred HHHHHHhccCcc
Q 025172 161 GLTWCVKKKGPV 172 (256)
Q Consensus 161 ~~~~a~~~~~~~ 172 (256)
.+....+..++.
T Consensus 367 ~~~~~~~~~~~~ 378 (451)
T 1pw4_A 367 IGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTSCTT
T ss_pred HHHHHHHHhchh
Confidence 345666666655
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=58.14 E-value=90 Score=26.81 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=6.0
Q ss_pred HHHHHHhccCcc
Q 025172 161 GLTWCVKKKGPV 172 (256)
Q Consensus 161 ~~~~a~~~~~~~ 172 (256)
.+.+..+..+..
T Consensus 407 ~~~~~~~~~p~~ 418 (491)
T 4aps_A 407 GLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHhCCHH
Confidence 444555555544
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=52.64 E-value=34 Score=29.47 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhheeccccc
Q 025172 177 FSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 177 ~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii~gi~l~~~~~~~~ 222 (256)
.....++++.+...+..-..-....+.|.+++++|+.++.+.++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345555555555444322222345667888888887777655443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=45.43 E-value=12 Score=24.19 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhheeccccc
Q 025172 201 SLLGSITVIIGLYILLWGKNKE 222 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~~~~~~~ 222 (256)
-++++++.++|++++...|-|-
T Consensus 24 LifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC---
T ss_pred chhHHHHHHHHHHHHHcCcccc
Confidence 3456777888888887765443
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=44.85 E-value=1e+02 Score=23.61 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=23.2
Q ss_pred HHHHHHHhcccchhhHHHHHHHHH--HHHhhheec
Q 025172 186 AMFDIPLLHERLHIGSLLGSITVI--IGLYILLWG 218 (256)
Q Consensus 186 ~ll~~l~~~E~i~~~~~iG~~lii--~gi~l~~~~ 218 (256)
--+|..++++.+-..+..+..+.+ +|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788899988888999987664 455444443
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=28.35 E-value=2.9e+02 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=8.6
Q ss_pred hhhH-HHHHHHHHHHHhhhee
Q 025172 198 HIGS-LLGSITVIIGLYILLW 217 (256)
Q Consensus 198 ~~~~-~iG~~lii~gi~l~~~ 217 (256)
++.. ..+..+++.++..+.+
T Consensus 444 ~~~~~~~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 444 MYVELLVVSFLVVLALPFILY 464 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3344444444444443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=27.74 E-value=2.8e+02 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKR 103 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~ 103 (256)
.|.+.. ...+...+......++.++
T Consensus 56 ~~~~~~-~~~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 56 AASIMA-IYASMVYLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 444433 3334444555555555566
No 12
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.56 E-value=18 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhheecc
Q 025172 201 SLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~~~~ 219 (256)
-++++++.++|++++...|
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3455677777877776554
No 13
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.23 E-value=2.9e+02 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 025172 87 TLLWASWFPIQSYIGKRY 104 (256)
Q Consensus 87 ~~~~a~~~v~~k~~~~~~ 104 (256)
.+.+.+.......+.+++
T Consensus 72 ~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 72 SIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhHHHHHHhc
Confidence 344444455555555555
No 14
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.77 E-value=23 Score=22.42 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhheecc
Q 025172 201 SLLGSITVIIGLYILLWGK 219 (256)
Q Consensus 201 ~~iG~~lii~gi~l~~~~~ 219 (256)
-++++++.++|++++...|
T Consensus 22 LifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTH
T ss_pred hhhHHHHHHHHHHHHHcCc
Confidence 3456677778887777654
Done!