Query 025172
Match_columns 256
No_of_seqs 148 out of 1752
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 05:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025172.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025172hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 66.1 27 0.002 27.3 14.5 43 78-122 61-103 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 57.0 40 0.0029 26.2 14.1 27 147-173 350-376 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 41.6 58 0.0042 23.6 10.1 51 159-209 71-121 (222)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 23.9 36 0.0026 15.7 2.8 19 78-96 3-21 (27)
5 d1pv7a_ f.38.1.2 (A:) Lactose 22.8 1.4E+02 0.01 22.0 13.6 24 149-172 321-344 (417)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 21.6 50 0.0037 16.5 3.5 19 76-94 17-35 (37)
7 d1pv7a_ f.38.1.2 (A:) Lactose 21.4 84 0.0061 23.3 6.1 16 179-194 148-163 (417)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 15.5 1.1E+02 0.0079 21.5 5.0 28 183-210 77-104 (199)
9 d1ffta_ f.24.1.1 (A:) Cytochro 4.8 6.3E+02 0.046 20.2 6.2 50 72-121 135-187 (501)
10 d1q90a3 f.23.23.1 (A:248-292) 4.2 3E+02 0.022 14.3 3.8 27 73-99 1-27 (45)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=66.11 E-value=27 Score=27.27 Aligned_cols=43 Identities=9% Similarity=-0.120 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPIQSYIGKRYPCKYSSTAILSLFGAIQA 122 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~ 122 (256)
.|.+.. +..+.+++.......+.+++.. -.......+..++..
T Consensus 61 ~g~~~s-~~~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 61 LGFALS-GISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVM 103 (447)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHH
Confidence 444433 2334445555566666666532 333333333333333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.05 E-value=40 Score=26.19 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc
Q 025172 147 VLYAGIVGSGLCYVGLTWCVKKKGPVF 173 (256)
Q Consensus 147 ll~~g~~~~~~~~~~~~~a~~~~~~~~ 173 (256)
++..|+.........+....+..+...
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 334444333334445556666666554
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=41.62 E-value=58 Score=23.59 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCccchhhchhhHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 025172 159 YVGLTWCVKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVI 209 (256)
Q Consensus 159 ~~~~~~a~~~~~~~~~s~~~~l~pv~a~ll~~l~~~E~i~~~~~iG~~lii 209 (256)
+.+....++.+......+.....-+.+.+++..+.+.+++....+|.++.+
T Consensus 71 ~liL~~~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 71 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHTTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchh
Confidence 344444455554444444333333455666777789999999988877654
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.91 E-value=36 Score=15.65 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025172 78 FGTIALTVGTLLWASWFPI 96 (256)
Q Consensus 78 ~G~ll~l~s~~~~a~~~v~ 96 (256)
+|.+..-+++++||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 6888888888888887543
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=22.83 E-value=1.4e+02 Score=21.99 Aligned_cols=24 Identities=4% Similarity=-0.252 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcc
Q 025172 149 YAGIVGSGLCYVGLTWCVKKKGPV 172 (256)
Q Consensus 149 ~~g~~~~~~~~~~~~~a~~~~~~~ 172 (256)
..|+......-..+.+..+..++.
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHh
Confidence 334433333333344455555543
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.57 E-value=50 Score=16.52 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 025172 76 WTFGTIALTVGTLLWASWF 94 (256)
Q Consensus 76 ~~~G~ll~l~s~~~~a~~~ 94 (256)
-.+|.++.+.-++.++.|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3488888888888887764
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.36 E-value=84 Score=23.34 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHhc
Q 025172 179 PLVQIMAAMFDIPLLH 194 (256)
Q Consensus 179 ~l~pv~a~ll~~l~~~ 194 (256)
....+.+..++..+.+
T Consensus 148 ~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 148 CVGWALGASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 3334444444444433
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.52 E-value=1.1e+02 Score=21.55 Aligned_cols=28 Identities=7% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHH
Q 025172 183 IMAAMFDIPLLHERLHIGSLLGSITVII 210 (256)
Q Consensus 183 v~a~ll~~l~~~E~i~~~~~iG~~lii~ 210 (256)
+........+++.+++.....+..+++.
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3333334455777777777666655543
No 9
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=6.3e+02 Score=20.23 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---chhHHHHHHHHHHHHH
Q 025172 72 KTERWTFGTIALTVGTLLWASWFPIQSYIGKRYP---CKYSSTAILSLFGAIQ 121 (256)
Q Consensus 72 ~~~~~~~G~ll~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~ 121 (256)
+.+-+..|..+..++....+++.+......|+-. .......|..+.+.++
T Consensus 135 ~~~l~i~gl~l~gissil~~in~i~Ti~~~R~~gm~~~~~PLf~w~~~~t~il 187 (501)
T d1ffta_ 135 GVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVL 187 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhccchhheeeeeeee
Confidence 3345678888888999999888877655444311 1234455555555544
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.18 E-value=3e+02 Score=14.26 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025172 73 TERWTFGTIALTVGTLLWASWFPIQSY 99 (256)
Q Consensus 73 ~~~~~~G~ll~l~s~~~~a~~~v~~k~ 99 (256)
+.....|.+..+++.+..-+..++-|+
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LVLKKK 27 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLVLKKK 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Done!