Query 025173
Match_columns 256
No_of_seqs 150 out of 1613
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 3.6E-48 7.8E-53 344.4 18.4 202 20-253 1-203 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 1.2E-43 2.5E-48 311.0 18.7 223 21-253 1-223 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 1.1E-42 2.4E-47 300.8 19.0 228 18-254 3-231 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 3.6E-42 7.8E-47 298.8 16.9 203 15-234 2-207 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.4E-40 3E-45 289.4 15.6 190 21-235 3-196 (354)
6 PLN02740 Alcohol dehydrogenase 100.0 5.4E-38 1.2E-42 288.0 21.9 222 16-238 4-228 (381)
7 TIGR02818 adh_III_F_hyde S-(hy 100.0 1.4E-36 3.1E-41 277.4 22.8 213 23-237 2-214 (368)
8 cd08300 alcohol_DH_class_III c 100.0 4E-36 8.6E-41 274.2 23.4 213 21-235 1-213 (368)
9 cd08301 alcohol_DH_plants Plan 100.0 2.8E-36 6E-41 275.2 22.4 215 21-237 1-216 (369)
10 PLN02586 probable cinnamyl alc 100.0 2.6E-36 5.6E-41 275.1 21.0 201 14-234 4-209 (360)
11 cd08281 liver_ADH_like1 Zinc-d 100.0 6.9E-36 1.5E-40 273.0 22.4 210 23-235 1-218 (371)
12 cd08239 THR_DH_like L-threonin 100.0 8.6E-36 1.9E-40 268.4 21.3 190 23-235 1-190 (339)
13 PLN02827 Alcohol dehydrogenase 100.0 3.2E-35 6.9E-40 269.5 23.0 213 17-235 7-220 (378)
14 TIGR03451 mycoS_dep_FDH mycoth 100.0 2.3E-35 5E-40 268.2 21.0 204 22-237 1-205 (358)
15 TIGR02819 fdhA_non_GSH formald 100.0 3.8E-35 8.3E-40 270.4 20.6 195 22-235 2-212 (393)
16 cd08277 liver_alcohol_DH_like 100.0 1E-34 2.3E-39 264.6 22.6 213 21-237 1-213 (365)
17 COG0604 Qor NADPH:quinone redu 100.0 2.1E-34 4.6E-39 259.1 19.9 166 23-234 1-169 (326)
18 PRK09880 L-idonate 5-dehydroge 100.0 2E-34 4.4E-39 260.5 19.9 188 20-235 2-196 (343)
19 TIGR02822 adh_fam_2 zinc-bindi 100.0 3.2E-34 6.9E-39 258.2 20.7 186 25-234 1-191 (329)
20 COG1063 Tdh Threonine dehydrog 100.0 3.7E-34 8E-39 260.1 18.5 191 23-235 1-195 (350)
21 PLN02178 cinnamyl-alcohol dehy 100.0 1.6E-33 3.5E-38 258.1 21.1 190 25-234 9-204 (375)
22 PLN02514 cinnamyl-alcohol dehy 100.0 2.5E-33 5.5E-38 255.0 21.7 194 21-234 8-206 (357)
23 cd08230 glucose_DH Glucose deh 100.0 2.6E-33 5.6E-38 254.3 21.1 189 23-234 1-198 (355)
24 cd08299 alcohol_DH_class_I_II_ 100.0 6.9E-33 1.5E-37 253.5 22.0 215 18-235 3-217 (373)
25 TIGR03201 dearomat_had 6-hydro 100.0 4.9E-33 1.1E-37 252.1 20.4 185 26-234 2-192 (349)
26 cd08237 ribitol-5-phosphate_DH 100.0 1E-32 2.2E-37 249.6 20.1 184 22-235 2-191 (341)
27 PRK10309 galactitol-1-phosphat 100.0 3.5E-32 7.7E-37 245.9 20.8 186 23-235 1-187 (347)
28 cd05279 Zn_ADH1 Liver alcohol 100.0 1.8E-31 3.9E-36 243.3 22.9 210 23-235 1-210 (365)
29 cd08231 MDR_TM0436_like Hypoth 100.0 1.1E-31 2.4E-36 243.7 21.1 194 24-234 2-203 (361)
30 cd08233 butanediol_DH_like (2R 100.0 4.4E-31 9.6E-36 238.9 20.8 187 23-234 1-198 (351)
31 cd08296 CAD_like Cinnamyl alco 100.0 6.5E-31 1.4E-35 236.4 21.5 188 23-234 1-189 (333)
32 PRK10083 putative oxidoreducta 100.0 5.6E-31 1.2E-35 236.7 20.7 187 23-235 1-188 (339)
33 cd05284 arabinose_DH_like D-ar 100.0 6.9E-31 1.5E-35 236.1 21.1 190 23-234 1-194 (340)
34 cd08278 benzyl_alcohol_DH Benz 100.0 6.9E-31 1.5E-35 239.5 21.2 212 21-235 1-213 (365)
35 KOG0025 Zn2+-binding dehydroge 100.0 3.1E-31 6.8E-36 227.3 15.7 195 12-255 9-207 (354)
36 cd08285 NADP_ADH NADP(H)-depen 100.0 1.4E-30 3.1E-35 235.7 20.8 191 23-235 1-193 (351)
37 cd08283 FDH_like_1 Glutathione 100.0 3.7E-30 8.1E-35 236.5 21.9 206 23-234 1-210 (386)
38 PRK13771 putative alcohol dehy 100.0 3.7E-30 8.1E-35 230.8 21.4 188 23-234 1-189 (334)
39 cd08259 Zn_ADH5 Alcohol dehydr 100.0 7.8E-30 1.7E-34 227.5 22.2 188 23-234 1-189 (332)
40 cd05278 FDH_like Formaldehyde 100.0 4.8E-30 1E-34 231.0 20.5 190 23-234 1-193 (347)
41 KOG1197 Predicted quinone oxid 100.0 2.1E-30 4.5E-35 218.9 16.4 178 19-254 5-185 (336)
42 cd08260 Zn_ADH6 Alcohol dehydr 100.0 1.5E-29 3.3E-34 228.1 22.7 189 23-234 1-191 (345)
43 PRK09422 ethanol-active dehydr 100.0 9.9E-30 2.2E-34 228.3 20.9 187 23-234 1-189 (338)
44 cd08256 Zn_ADH2 Alcohol dehydr 100.0 1.3E-29 2.8E-34 229.3 20.7 188 23-235 1-201 (350)
45 cd08279 Zn_ADH_class_III Class 100.0 3E-29 6.5E-34 228.3 22.0 209 23-235 1-209 (363)
46 cd08264 Zn_ADH_like2 Alcohol d 100.0 3.2E-29 6.9E-34 223.9 21.1 187 23-234 1-189 (325)
47 cd08246 crotonyl_coA_red croto 100.0 2.4E-29 5.2E-34 231.3 20.3 195 18-234 8-220 (393)
48 cd08298 CAD2 Cinnamyl alcohol 100.0 4.8E-29 1E-33 223.1 21.5 188 23-234 1-193 (329)
49 cd08240 6_hydroxyhexanoate_dh_ 100.0 2.4E-29 5.3E-34 227.3 19.7 192 23-236 1-203 (350)
50 cd08238 sorbose_phosphate_red 100.0 3.5E-29 7.6E-34 231.8 20.3 178 21-233 1-201 (410)
51 cd08282 PFDH_like Pseudomonas 100.0 9.4E-29 2E-33 226.2 22.1 197 23-235 1-203 (375)
52 cd08286 FDH_like_ADH2 formalde 100.0 1.1E-28 2.3E-33 222.6 21.7 189 23-234 1-192 (345)
53 cd08266 Zn_ADH_like1 Alcohol d 100.0 1.1E-28 2.4E-33 219.9 21.5 190 23-234 1-193 (342)
54 TIGR01751 crot-CoA-red crotony 100.0 8.4E-29 1.8E-33 228.3 21.0 194 19-234 4-216 (398)
55 cd05283 CAD1 Cinnamyl alcohol 100.0 1E-28 2.2E-33 222.4 20.9 194 24-234 1-195 (337)
56 TIGR01202 bchC 2-desacetyl-2-h 100.0 8.2E-29 1.8E-33 221.1 19.0 168 22-235 1-171 (308)
57 cd08242 MDR_like Medium chain 100.0 1.5E-28 3.3E-33 219.2 20.5 180 23-234 1-181 (319)
58 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 1.7E-28 3.7E-33 219.6 20.9 190 23-234 1-191 (338)
59 cd08263 Zn_ADH10 Alcohol dehyd 100.0 2.4E-28 5.3E-33 222.6 21.4 210 23-235 1-214 (367)
60 cd08284 FDH_like_2 Glutathione 100.0 2.3E-28 5E-33 220.0 21.0 190 23-234 1-193 (344)
61 cd08261 Zn_ADH7 Alcohol dehydr 100.0 2.9E-28 6.3E-33 219.1 20.9 185 23-234 1-185 (337)
62 cd08287 FDH_like_ADH3 formalde 100.0 5E-28 1.1E-32 218.1 20.7 187 23-235 1-195 (345)
63 cd08245 CAD Cinnamyl alcohol d 100.0 6.2E-28 1.4E-32 216.0 21.0 187 24-234 1-188 (330)
64 cd08235 iditol_2_DH_like L-idi 100.0 6.8E-28 1.5E-32 216.9 21.2 186 23-234 1-191 (343)
65 PRK05396 tdh L-threonine 3-deh 100.0 5.4E-28 1.2E-32 217.8 20.6 188 23-235 1-190 (341)
66 cd08265 Zn_ADH3 Alcohol dehydr 100.0 6.5E-28 1.4E-32 221.4 20.9 190 21-235 27-230 (384)
67 PLN02702 L-idonate 5-dehydroge 100.0 8.8E-28 1.9E-32 218.7 21.1 192 21-237 16-210 (364)
68 cd08297 CAD3 Cinnamyl alcohol 100.0 2.2E-27 4.7E-32 213.6 21.8 189 23-234 1-192 (341)
69 cd08236 sugar_DH NAD(P)-depend 100.0 1.1E-27 2.4E-32 215.7 19.9 185 23-234 1-185 (343)
70 cd08234 threonine_DH_like L-th 100.0 1.6E-27 3.5E-32 213.5 20.8 186 23-235 1-186 (334)
71 cd08258 Zn_ADH4 Alcohol dehydr 100.0 3.1E-27 6.7E-32 210.5 21.2 188 23-234 1-190 (306)
72 cd08262 Zn_ADH8 Alcohol dehydr 100.0 2.3E-27 4.9E-32 213.5 19.9 177 23-235 1-188 (341)
73 cd08292 ETR_like_2 2-enoyl thi 100.0 2.2E-27 4.9E-32 211.3 18.7 162 23-234 1-166 (324)
74 cd05285 sorbitol_DH Sorbitol d 100.0 3.8E-27 8.3E-32 212.6 19.8 186 25-234 1-188 (343)
75 cd08232 idonate-5-DH L-idonate 100.0 4.2E-27 9E-32 211.6 19.9 183 27-234 2-191 (339)
76 cd08291 ETR_like_1 2-enoyl thi 99.9 7.4E-27 1.6E-31 209.1 17.6 162 23-234 1-170 (324)
77 cd08274 MDR9 Medium chain dehy 99.9 2.1E-26 4.6E-31 207.5 19.8 181 23-234 1-204 (350)
78 TIGR02817 adh_fam_1 zinc-bindi 99.9 1.4E-26 3.1E-31 207.5 18.6 164 24-234 1-176 (336)
79 cd05281 TDH Threonine dehydrog 99.9 4.5E-26 9.7E-31 205.5 20.4 188 23-235 1-190 (341)
80 cd08290 ETR 2-enoyl thioester 99.9 4.5E-26 9.7E-31 204.9 17.3 164 23-234 1-173 (341)
81 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 1.8E-25 3.8E-30 199.0 20.4 167 23-234 1-173 (325)
82 PTZ00354 alcohol dehydrogenase 99.9 2E-25 4.3E-30 199.2 20.4 164 22-234 1-167 (334)
83 TIGR03366 HpnZ_proposed putati 99.9 4.4E-26 9.6E-31 200.7 14.5 133 80-235 1-147 (280)
84 TIGR00692 tdh L-threonine 3-de 99.9 1.9E-25 4.1E-30 201.3 18.8 182 29-235 5-188 (340)
85 cd08276 MDR7 Medium chain dehy 99.9 6.1E-25 1.3E-29 196.0 21.5 184 23-234 1-186 (336)
86 cd08293 PTGR2 Prostaglandin re 99.9 2.4E-25 5.1E-30 200.6 18.7 149 35-234 23-181 (345)
87 PRK10754 quinone oxidoreductas 99.9 2.7E-25 5.9E-30 198.7 18.9 164 22-234 1-167 (327)
88 cd08295 double_bond_reductase_ 99.9 3.3E-25 7.1E-30 199.7 18.2 162 21-234 6-178 (338)
89 TIGR02823 oxido_YhdH putative 99.9 1.1E-24 2.4E-29 194.2 20.9 166 24-234 1-172 (323)
90 cd05188 MDR Medium chain reduc 99.9 4.7E-25 1E-29 190.4 16.8 160 49-234 1-160 (271)
91 cd08289 MDR_yhfp_like Yhfp put 99.9 1.1E-24 2.3E-29 194.5 19.5 167 23-234 1-173 (326)
92 cd08250 Mgc45594_like Mgc45594 99.9 1.1E-24 2.3E-29 194.8 19.4 161 22-234 1-166 (329)
93 cd08294 leukotriene_B4_DH_like 99.9 1.3E-24 2.8E-29 194.2 19.4 154 22-234 2-170 (329)
94 cd08243 quinone_oxidoreductase 99.9 1.5E-24 3.2E-29 192.0 19.6 166 23-234 1-169 (320)
95 TIGR02825 B4_12hDH leukotriene 99.9 2.5E-24 5.4E-29 192.8 19.5 141 35-234 19-165 (325)
96 PLN03154 putative allyl alcoho 99.9 3.2E-24 6.8E-29 194.7 20.0 162 20-234 6-185 (348)
97 cd08288 MDR_yhdh Yhdh putative 99.9 3.8E-24 8.3E-29 190.7 20.2 167 23-234 1-173 (324)
98 cd08244 MDR_enoyl_red Possible 99.9 3.4E-24 7.4E-29 190.7 19.4 164 23-234 1-169 (324)
99 cd08248 RTN4I1 Human Reticulon 99.9 3.9E-24 8.5E-29 192.7 19.3 166 23-234 1-189 (350)
100 cd08273 MDR8 Medium chain dehy 99.9 7E-24 1.5E-28 189.4 19.9 162 24-234 2-166 (331)
101 cd08270 MDR4 Medium chain dehy 99.9 6.4E-24 1.4E-28 187.5 19.4 156 23-234 1-159 (305)
102 cd08252 AL_MDR Arginate lyase 99.9 6.6E-24 1.4E-28 190.1 19.4 165 23-234 1-177 (336)
103 cd08249 enoyl_reductase_like e 99.9 3.3E-24 7.1E-29 193.4 17.0 169 23-234 1-181 (339)
104 cd05276 p53_inducible_oxidored 99.9 1E-23 2.2E-28 185.8 19.0 163 23-234 1-166 (323)
105 cd08253 zeta_crystallin Zeta-c 99.9 1.8E-23 3.8E-28 184.7 19.4 168 23-234 1-171 (325)
106 PF08240 ADH_N: Alcohol dehydr 99.9 1E-24 2.2E-29 166.2 9.3 109 47-177 1-109 (109)
107 cd08247 AST1_like AST1 is a cy 99.9 8E-23 1.7E-27 184.9 20.9 166 24-233 2-177 (352)
108 cd08272 MDR6 Medium chain dehy 99.9 4.6E-23 1E-27 182.5 18.8 168 23-234 1-171 (326)
109 cd08271 MDR5 Medium chain dehy 99.9 9.3E-23 2E-27 180.9 19.8 165 23-234 1-168 (325)
110 cd08268 MDR2 Medium chain dehy 99.9 1.2E-22 2.5E-27 179.8 19.3 168 23-234 1-171 (328)
111 cd05282 ETR_like 2-enoyl thioe 99.9 6.8E-23 1.5E-27 182.2 17.8 151 35-234 14-165 (323)
112 KOG1198 Zinc-binding oxidoredu 99.9 1.6E-22 3.6E-27 182.9 16.5 181 22-256 4-201 (347)
113 TIGR02824 quinone_pig3 putativ 99.9 7.5E-22 1.6E-26 174.5 19.9 163 23-234 1-166 (325)
114 cd05286 QOR2 Quinone oxidoredu 99.9 6.6E-22 1.4E-26 174.0 18.9 160 24-234 1-163 (320)
115 cd08269 Zn_ADH9 Alcohol dehydr 99.9 8.9E-22 1.9E-26 174.2 18.5 152 29-234 2-155 (312)
116 cd05289 MDR_like_2 alcohol deh 99.9 7.5E-22 1.6E-26 173.3 17.8 166 23-234 1-171 (309)
117 cd08251 polyketide_synthase po 99.9 1.3E-21 2.8E-26 171.5 17.4 145 42-234 2-147 (303)
118 cd08275 MDR3 Medium chain dehy 99.9 3.6E-21 7.7E-26 171.6 19.5 159 24-231 1-162 (337)
119 cd08267 MDR1 Medium chain dehy 99.9 2.5E-21 5.5E-26 171.2 18.4 153 36-234 15-170 (319)
120 cd08241 QOR1 Quinone oxidoredu 99.9 6.1E-21 1.3E-25 168.3 19.2 162 23-234 1-166 (323)
121 cd05288 PGDH Prostaglandin deh 99.9 5.8E-21 1.3E-25 170.5 18.7 158 23-234 2-172 (329)
122 cd05195 enoyl_red enoyl reduct 99.9 2.3E-20 4.9E-25 161.8 16.6 134 48-234 1-135 (293)
123 smart00829 PKS_ER Enoylreducta 99.8 4.1E-19 8.9E-24 153.9 15.5 129 52-234 2-131 (288)
124 COG2130 Putative NADP-dependen 99.8 8.7E-19 1.9E-23 152.1 13.1 158 35-254 27-189 (340)
125 cd08255 2-desacetyl-2-hydroxye 99.7 1.6E-16 3.6E-21 138.7 13.7 111 69-235 14-124 (277)
126 KOG1196 Predicted NAD-dependen 99.6 6.8E-14 1.5E-18 121.5 17.0 154 38-253 27-191 (343)
127 KOG1202 Animal-type fatty acid 99.5 4.6E-14 1E-18 139.0 8.7 141 35-234 1429-1579(2376)
128 TIGR01035 hemA glutamyl-tRNA r 96.9 1.4E-05 3.1E-10 74.5 -8.0 115 79-235 88-206 (417)
129 PRK09424 pntA NAD(P) transhydr 96.5 0.0048 1.1E-07 58.9 5.6 30 205-234 161-190 (509)
130 cd00401 AdoHcyase S-adenosyl-L 95.5 0.03 6.5E-07 52.2 6.1 39 196-234 188-227 (413)
131 PRK00517 prmA ribosomal protei 95.0 0.079 1.7E-06 45.9 6.8 67 162-235 78-144 (250)
132 cd05213 NAD_bind_Glutamyl_tRNA 94.9 0.016 3.6E-07 51.9 2.3 61 173-235 140-204 (311)
133 PRK05476 S-adenosyl-L-homocyst 94.8 0.12 2.6E-06 48.5 7.7 41 194-234 196-237 (425)
134 PF01488 Shikimate_DH: Shikima 93.8 0.13 2.8E-06 40.3 5.0 31 207-237 10-40 (135)
135 PRK12771 putative glutamate sy 93.7 0.12 2.7E-06 50.1 5.6 30 205-234 133-162 (564)
136 TIGR00561 pntA NAD(P) transhyd 93.4 0.15 3.3E-06 48.8 5.6 28 207-234 162-189 (511)
137 PF13823 ADH_N_assoc: Alcohol 93.4 0.085 1.8E-06 28.4 2.2 22 23-45 1-22 (23)
138 TIGR00936 ahcY adenosylhomocys 93.3 0.21 4.5E-06 46.6 6.2 39 196-234 181-220 (406)
139 PF01262 AlaDh_PNT_C: Alanine 92.7 0.19 4E-06 40.9 4.4 37 209-253 20-56 (168)
140 PRK08306 dipicolinate synthase 91.6 0.92 2E-05 40.4 8.0 27 208-234 151-177 (296)
141 PLN02494 adenosylhomocysteinas 91.3 0.48 1E-05 44.9 6.0 38 197-234 241-279 (477)
142 PRK00045 hemA glutamyl-tRNA re 91.1 0.41 8.8E-06 44.9 5.4 116 79-235 90-208 (423)
143 PRK08324 short chain dehydroge 91.0 0.28 6E-06 48.8 4.3 62 162-234 386-448 (681)
144 TIGR00518 alaDH alanine dehydr 90.9 0.36 7.9E-06 44.4 4.7 27 208-234 166-192 (370)
145 PRK11873 arsM arsenite S-adeno 90.1 0.62 1.3E-05 40.6 5.3 31 203-234 72-102 (272)
146 PTZ00075 Adenosylhomocysteinas 90.0 1.5 3.3E-05 41.6 8.1 38 197-234 241-279 (476)
147 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 1.5 3.2E-05 35.8 6.4 49 186-234 21-70 (168)
148 PRK12549 shikimate 5-dehydroge 88.1 1.4 3E-05 39.1 6.1 31 208-238 126-156 (284)
149 cd01075 NAD_bind_Leu_Phe_Val_D 87.6 2.3 5E-05 35.6 6.9 28 207-234 26-53 (200)
150 PRK12550 shikimate 5-dehydroge 87.1 2.2 4.8E-05 37.6 6.8 35 204-238 117-151 (272)
151 cd01078 NAD_bind_H4MPT_DH NADP 86.7 2.2 4.7E-05 35.2 6.2 27 208-234 27-54 (194)
152 PLN03209 translocon at the inn 86.1 1.2 2.6E-05 43.4 4.9 33 202-234 73-106 (576)
153 PF00899 ThiF: ThiF family; I 86.1 1.2 2.7E-05 34.5 4.2 38 209-246 2-39 (135)
154 COG0169 AroE Shikimate 5-dehyd 85.9 2.2 4.8E-05 37.8 6.2 30 206-235 123-152 (283)
155 cd05191 NAD_bind_amino_acid_DH 85.9 3.6 7.8E-05 29.3 6.3 40 207-246 21-60 (86)
156 PRK00258 aroE shikimate 5-dehy 85.8 2.6 5.6E-05 37.1 6.6 29 207-235 121-149 (278)
157 PF00670 AdoHcyase_NAD: S-aden 85.8 2.7 5.7E-05 34.2 6.0 48 196-252 9-57 (162)
158 TIGR02356 adenyl_thiF thiazole 85.6 1.3 2.8E-05 37.1 4.3 39 209-247 21-59 (202)
159 TIGR02355 moeB molybdopterin s 85.6 1.1 2.3E-05 38.7 4.0 39 209-247 24-62 (240)
160 PF02826 2-Hacid_dh_C: D-isome 85.0 1.8 3.9E-05 35.4 4.9 28 207-234 34-61 (178)
161 PRK11705 cyclopropane fatty ac 84.9 2.8 6E-05 38.8 6.6 45 189-234 148-192 (383)
162 PRK14027 quinate/shikimate deh 84.7 2.6 5.6E-05 37.4 6.0 33 207-239 125-157 (283)
163 TIGR01809 Shik-DH-AROM shikima 84.5 1.7 3.6E-05 38.4 4.8 32 208-239 124-155 (282)
164 PRK08328 hypothetical protein; 84.5 1.3 2.7E-05 38.0 3.9 37 209-245 27-63 (231)
165 PRK05866 short chain dehydroge 84.4 1.7 3.7E-05 38.3 4.8 27 208-234 39-66 (293)
166 PLN02780 ketoreductase/ oxidor 84.2 1.8 3.8E-05 38.9 4.9 27 208-234 52-79 (320)
167 COG0334 GdhA Glutamate dehydro 83.1 4.1 8.9E-05 37.9 6.8 59 183-251 182-241 (411)
168 TIGR00507 aroE shikimate 5-deh 83.0 3.9 8.4E-05 35.7 6.4 29 206-234 114-142 (270)
169 TIGR02354 thiF_fam2 thiamine b 82.8 2.1 4.5E-05 35.9 4.4 39 209-247 21-59 (200)
170 TIGR02853 spore_dpaA dipicolin 82.7 5.2 0.00011 35.5 7.2 27 208-234 150-176 (287)
171 PRK05690 molybdopterin biosynt 82.7 2.1 4.5E-05 37.1 4.5 40 209-248 32-71 (245)
172 PTZ00079 NADP-specific glutama 82.6 4.5 9.7E-05 38.3 6.9 28 207-234 235-262 (454)
173 cd05311 NAD_bind_2_malic_enz N 82.6 4.1 9E-05 34.8 6.3 36 207-242 23-60 (226)
174 cd05211 NAD_bind_Glu_Leu_Phe_V 82.6 5.2 0.00011 34.0 6.8 36 207-250 21-56 (217)
175 PRK08223 hypothetical protein; 82.4 1.5 3.2E-05 39.0 3.5 40 209-248 27-66 (287)
176 cd05313 NAD_bind_2_Glu_DH NAD( 82.2 5.3 0.00012 34.9 6.8 28 207-234 36-63 (254)
177 cd00757 ThiF_MoeB_HesA_family 82.1 2.2 4.7E-05 36.4 4.4 39 209-247 21-59 (228)
178 TIGR02964 xanthine_xdhC xanthi 81.7 2.7 5.8E-05 36.5 4.8 32 205-236 96-127 (246)
179 PRK12475 thiamine/molybdopteri 81.7 2 4.4E-05 39.1 4.2 37 209-245 24-60 (338)
180 PRK12548 shikimate 5-dehydroge 81.6 3.5 7.5E-05 36.6 5.6 31 208-238 125-155 (289)
181 PRK06196 oxidoreductase; Provi 81.4 2.5 5.3E-05 37.5 4.7 27 208-234 25-52 (315)
182 PRK08644 thiamine biosynthesis 81.1 2.4 5.3E-05 35.8 4.3 37 209-245 28-64 (212)
183 PRK15116 sulfur acceptor prote 81.1 2.5 5.3E-05 37.2 4.4 42 208-249 29-70 (268)
184 PRK06153 hypothetical protein; 80.9 1.8 3.8E-05 40.2 3.5 40 208-247 175-214 (393)
185 PRK12769 putative oxidoreducta 80.8 2.2 4.8E-05 42.2 4.5 28 207-234 325-352 (654)
186 cd01065 NAD_bind_Shikimate_DH 80.4 6.4 0.00014 30.8 6.3 27 207-233 17-43 (155)
187 TIGR01318 gltD_gamma_fam gluta 80.2 2.9 6.3E-05 39.6 4.9 27 208-234 140-166 (467)
188 PRK13940 glutamyl-tRNA reducta 80.0 5.6 0.00012 37.2 6.7 31 207-237 179-209 (414)
189 PRK14030 glutamate dehydrogena 80.0 6.5 0.00014 37.2 7.0 28 207-234 226-253 (445)
190 PF00208 ELFV_dehydrog: Glutam 79.9 4.5 9.8E-05 35.0 5.6 28 207-234 30-57 (244)
191 PF02353 CMAS: Mycolic acid cy 79.9 3.8 8.1E-05 36.1 5.2 34 200-234 54-87 (273)
192 PRK05597 molybdopterin biosynt 79.8 2.8 6E-05 38.4 4.5 40 209-248 28-67 (355)
193 PF00070 Pyr_redox: Pyridine n 79.7 4.1 8.8E-05 28.3 4.4 26 211-236 1-26 (80)
194 TIGR01381 E1_like_apg7 E1-like 79.4 2.5 5.4E-05 41.7 4.2 41 208-248 337-377 (664)
195 COG1179 Dinucleotide-utilizing 79.1 2.2 4.8E-05 37.0 3.4 43 208-250 29-71 (263)
196 PRK05600 thiamine biosynthesis 78.8 3 6.4E-05 38.5 4.4 41 208-248 40-80 (370)
197 PRK07688 thiamine/molybdopteri 78.7 2.7 5.8E-05 38.3 4.0 36 209-244 24-59 (339)
198 PRK14031 glutamate dehydrogena 78.7 7.4 0.00016 36.8 7.0 28 207-234 226-253 (444)
199 PF13241 NAD_binding_7: Putati 78.5 2.2 4.7E-05 31.6 2.8 27 208-234 6-32 (103)
200 TIGR00406 prmA ribosomal prote 78.5 10 0.00023 33.4 7.7 31 206-238 157-187 (288)
201 PRK06719 precorrin-2 dehydroge 78.1 4.5 9.8E-05 32.5 4.8 28 208-235 12-39 (157)
202 PRK07411 hypothetical protein; 77.9 3 6.5E-05 38.7 4.2 41 209-249 38-78 (390)
203 PRK08762 molybdopterin biosynt 77.1 3.1 6.7E-05 38.3 4.0 38 208-245 134-171 (376)
204 PLN02477 glutamate dehydrogena 76.6 8.6 0.00019 36.0 6.8 27 208-234 205-231 (410)
205 PRK12809 putative oxidoreducta 76.5 3.7 8.1E-05 40.5 4.6 27 208-234 309-335 (639)
206 PRK12749 quinate/shikimate deh 76.4 6.3 0.00014 35.0 5.6 34 208-241 123-156 (288)
207 PRK07878 molybdopterin biosynt 76.2 3.5 7.7E-05 38.2 4.2 40 209-248 42-81 (392)
208 PLN02520 bifunctional 3-dehydr 75.7 4.2 9E-05 39.4 4.6 27 208-234 378-404 (529)
209 PRK12814 putative NADPH-depend 74.7 5.1 0.00011 39.7 5.0 28 207-234 191-218 (652)
210 PRK12831 putative oxidoreducta 73.9 5 0.00011 38.0 4.6 29 206-234 137-165 (464)
211 COG0281 SfcA Malic enzyme [Ene 73.5 9.2 0.0002 35.7 6.0 55 196-250 186-242 (432)
212 KOG0029 Amine oxidase [Seconda 73.1 4.3 9.2E-05 39.0 3.9 31 207-237 13-43 (501)
213 cd01492 Aos1_SUMO Ubiquitin ac 72.8 4.3 9.2E-05 33.9 3.4 37 209-245 21-57 (197)
214 PF13450 NAD_binding_8: NAD(P) 72.7 4.8 0.0001 27.4 3.1 21 214-234 1-21 (68)
215 PRK12810 gltD glutamate syntha 72.6 6.3 0.00014 37.3 5.0 28 207-234 141-168 (471)
216 PRK07424 bifunctional sterol d 72.2 7.6 0.00017 36.3 5.3 27 208-234 177-204 (406)
217 PTZ00414 10 kDa heat shock pro 71.7 6.9 0.00015 29.1 3.9 23 86-108 46-72 (100)
218 PRK09414 glutamate dehydrogena 71.6 14 0.00029 35.1 6.8 28 207-234 230-257 (445)
219 PLN02686 cinnamoyl-CoA reducta 71.0 6.6 0.00014 35.8 4.6 28 207-234 51-79 (367)
220 PRK00676 hemA glutamyl-tRNA re 70.5 12 0.00027 34.0 6.1 37 207-243 172-208 (338)
221 KOG1014 17 beta-hydroxysteroid 70.4 5.8 0.00013 35.5 3.9 40 207-255 47-88 (312)
222 cd01485 E1-1_like Ubiquitin ac 70.4 4.9 0.00011 33.5 3.3 36 209-244 19-54 (198)
223 PRK13984 putative oxidoreducta 70.3 6.8 0.00015 38.3 4.8 29 206-234 280-308 (604)
224 PRK08261 fabG 3-ketoacyl-(acyl 70.3 3.8 8.1E-05 38.4 2.8 33 202-234 27-64 (450)
225 PRK00377 cbiT cobalt-precorrin 70.1 10 0.00022 31.3 5.1 31 202-233 34-64 (198)
226 PRK00364 groES co-chaperonin G 70.1 6 0.00013 29.1 3.3 24 85-108 36-68 (95)
227 PRK06484 short chain dehydroge 69.9 7.2 0.00016 37.1 4.7 28 207-234 267-295 (520)
228 PRK12779 putative bifunctional 69.3 5.5 0.00012 41.3 4.0 28 207-234 304-331 (944)
229 cd01076 NAD_bind_1_Glu_DH NAD( 69.2 9.5 0.00021 32.6 4.9 27 208-234 30-56 (227)
230 PRK04148 hypothetical protein; 69.1 9.6 0.00021 29.9 4.4 30 204-234 12-41 (134)
231 PF03807 F420_oxidored: NADP o 68.7 9.3 0.0002 27.3 4.1 22 211-232 1-22 (96)
232 PRK09310 aroDE bifunctional 3- 68.4 15 0.00034 35.0 6.6 27 208-234 331-357 (477)
233 PRK07364 2-octaprenyl-6-methox 68.2 4.7 0.0001 37.1 3.0 26 210-235 19-44 (415)
234 PLN02927 antheraxanthin epoxid 68.0 7 0.00015 38.9 4.3 29 206-234 78-106 (668)
235 cd00320 cpn10 Chaperonin 10 Kd 67.8 7.7 0.00017 28.4 3.5 24 85-108 35-67 (93)
236 COG2230 Cfa Cyclopropane fatty 67.6 25 0.00054 31.2 7.2 48 196-252 60-107 (283)
237 PRK14175 bifunctional 5,10-met 67.6 13 0.00028 33.1 5.4 48 188-236 137-186 (286)
238 PRK01438 murD UDP-N-acetylmura 67.3 7.2 0.00016 36.9 4.1 30 207-236 14-43 (480)
239 PF11017 DUF2855: Protein of u 67.3 83 0.0018 28.4 10.6 24 87-112 39-62 (314)
240 TIGR01317 GOGAT_sm_gam glutama 67.3 9.5 0.00021 36.4 4.9 28 207-234 141-168 (485)
241 PRK07985 oxidoreductase; Provi 66.7 8.7 0.00019 33.7 4.3 27 208-234 48-75 (294)
242 PF03949 Malic_M: Malic enzyme 66.6 16 0.00036 31.8 5.8 44 206-249 22-75 (255)
243 PRK06935 2-deoxy-D-gluconate 3 66.5 7.8 0.00017 33.0 3.9 29 208-236 14-43 (258)
244 PRK09853 putative selenate red 66.5 8.6 0.00019 40.1 4.7 28 207-234 537-564 (1019)
245 PF12847 Methyltransf_18: Meth 66.4 11 0.00024 27.4 4.2 37 208-253 1-38 (112)
246 cd00762 NAD_bind_malic_enz NAD 66.4 15 0.00032 32.1 5.5 42 208-249 24-75 (254)
247 PRK14851 hypothetical protein; 66.4 8 0.00017 38.6 4.3 42 208-249 42-83 (679)
248 PRK06567 putative bifunctional 66.3 7 0.00015 40.6 3.9 28 207-234 381-408 (1028)
249 KOG2017 Molybdopterin synthase 66.1 4.6 0.0001 36.8 2.3 39 209-247 66-104 (427)
250 PRK08261 fabG 3-ketoacyl-(acyl 66.0 9.7 0.00021 35.6 4.7 27 208-234 209-236 (450)
251 PRK04176 ribulose-1,5-biphosph 66.0 8.2 0.00018 33.6 3.9 25 210-234 26-50 (257)
252 TIGR01316 gltA glutamate synth 65.9 11 0.00024 35.5 5.0 28 207-234 131-158 (449)
253 cd05312 NAD_bind_1_malic_enz N 65.5 22 0.00048 31.5 6.5 48 202-249 17-75 (279)
254 PLN00203 glutamyl-tRNA reducta 65.4 18 0.0004 34.9 6.4 27 209-235 266-292 (519)
255 PRK10669 putative cation:proto 64.8 9 0.0002 37.1 4.3 37 210-254 418-454 (558)
256 PLN02928 oxidoreductase family 64.7 11 0.00024 34.3 4.7 27 208-234 158-184 (347)
257 cd01491 Ube1_repeat1 Ubiquitin 64.6 8.1 0.00018 34.3 3.6 39 209-247 19-57 (286)
258 PLN00093 geranylgeranyl diphos 64.3 9.7 0.00021 36.0 4.3 25 210-234 40-64 (450)
259 PRK08132 FAD-dependent oxidore 64.3 8.4 0.00018 37.1 4.0 25 210-234 24-48 (547)
260 TIGR02632 RhaD_aldol-ADH rhamn 64.0 11 0.00023 37.7 4.7 27 208-234 413-440 (676)
261 PRK07831 short chain dehydroge 64.0 9.2 0.0002 32.6 3.8 29 206-234 14-44 (262)
262 PRK06128 oxidoreductase; Provi 63.8 12 0.00027 32.7 4.7 27 208-234 54-81 (300)
263 KOG1201 Hydroxysteroid 17-beta 63.6 12 0.00027 33.3 4.5 27 208-234 37-64 (300)
264 PRK06841 short chain dehydroge 63.3 9.7 0.00021 32.1 3.9 32 208-240 14-46 (255)
265 TIGR03315 Se_ygfK putative sel 63.3 11 0.00024 39.4 4.7 27 208-234 536-562 (1012)
266 COG2264 PrmA Ribosomal protein 62.2 13 0.00028 33.3 4.5 69 172-247 130-199 (300)
267 PRK14533 groES co-chaperonin G 61.9 13 0.00028 27.2 3.7 23 86-108 37-63 (91)
268 COG2518 Pcm Protein-L-isoaspar 61.5 22 0.00047 30.1 5.5 32 200-232 64-95 (209)
269 PRK12770 putative glutamate sy 61.4 12 0.00025 33.9 4.2 31 206-236 15-45 (352)
270 TIGR00292 thiazole biosynthesi 61.3 13 0.00028 32.3 4.3 24 211-234 23-46 (254)
271 PRK05855 short chain dehydroge 61.1 13 0.00029 35.3 4.8 27 208-234 314-341 (582)
272 KOG2015 NEDD8-activating compl 61.1 8.6 0.00019 34.8 3.1 40 210-249 41-80 (422)
273 PRK07201 short chain dehydroge 61.0 13 0.00028 36.4 4.7 26 209-234 371-397 (657)
274 PRK12778 putative bifunctional 61.0 13 0.00029 37.4 4.9 27 208-234 430-456 (752)
275 PRK11749 dihydropyrimidine deh 60.8 13 0.00029 34.9 4.6 28 207-234 138-165 (457)
276 COG0686 Ald Alanine dehydrogen 60.7 10 0.00022 34.3 3.4 40 209-256 168-207 (371)
277 PRK06701 short chain dehydroge 60.7 16 0.00034 32.0 4.8 28 207-234 44-72 (290)
278 PRK06932 glycerate dehydrogena 60.6 13 0.00029 33.3 4.3 27 208-234 146-172 (314)
279 PRK08410 2-hydroxyacid dehydro 60.5 15 0.00032 33.0 4.6 27 208-234 144-170 (311)
280 PRK12367 short chain dehydroge 60.5 12 0.00025 32.2 3.8 28 208-235 13-41 (245)
281 COG0476 ThiF Dinucleotide-util 60.3 9.9 0.00021 32.8 3.4 40 209-248 30-69 (254)
282 PRK06197 short chain dehydroge 60.0 10 0.00022 33.3 3.5 27 208-234 15-42 (306)
283 PTZ00188 adrenodoxin reductase 59.9 12 0.00025 36.1 3.9 28 207-234 37-65 (506)
284 PLN02657 3,8-divinyl protochlo 59.5 19 0.0004 33.3 5.2 31 204-234 55-86 (390)
285 PRK05854 short chain dehydroge 59.5 12 0.00026 33.2 3.9 28 208-235 13-41 (313)
286 PRK06487 glycerate dehydrogena 59.3 15 0.00033 33.0 4.5 27 208-234 147-173 (317)
287 PRK08294 phenol 2-monooxygenas 59.2 11 0.00024 37.3 3.8 25 210-234 33-58 (634)
288 PRK12775 putative trifunctiona 59.2 11 0.00025 39.3 4.1 27 208-234 429-455 (1006)
289 KOG2018 Predicted dinucleotide 59.0 9.6 0.00021 34.4 3.0 38 207-244 72-109 (430)
290 COG0111 SerA Phosphoglycerate 58.7 17 0.00036 32.9 4.6 26 209-234 142-167 (324)
291 PLN02695 GDP-D-mannose-3',5'-e 58.5 18 0.00039 33.0 4.9 29 206-234 18-47 (370)
292 COG0373 HemA Glutamyl-tRNA red 58.3 32 0.00069 32.3 6.5 35 207-241 176-210 (414)
293 PLN02253 xanthoxin dehydrogena 58.3 13 0.00029 31.9 3.9 27 208-234 17-44 (280)
294 PRK12831 putative oxidoreducta 58.1 12 0.00027 35.3 3.9 29 206-234 278-306 (464)
295 TIGR02469 CbiT precorrin-6Y C5 58.1 9.9 0.00021 28.0 2.7 33 201-234 12-44 (124)
296 PRK15181 Vi polysaccharide bio 58.1 16 0.00036 32.8 4.6 32 207-239 13-45 (348)
297 PRK13243 glyoxylate reductase; 58.1 17 0.00036 32.9 4.6 27 208-234 149-175 (333)
298 PRK12480 D-lactate dehydrogena 58.0 20 0.00043 32.5 5.0 27 208-234 145-171 (330)
299 PRK14192 bifunctional 5,10-met 57.9 26 0.00056 31.0 5.6 34 201-234 150-185 (283)
300 PRK05562 precorrin-2 dehydroge 57.9 17 0.00036 31.1 4.3 27 208-234 24-50 (223)
301 PF00289 CPSase_L_chain: Carba 57.4 16 0.00034 27.6 3.6 25 210-234 3-27 (110)
302 PRK15317 alkyl hydroperoxide r 57.3 15 0.00032 35.2 4.3 27 209-235 211-237 (517)
303 PRK13943 protein-L-isoaspartat 57.3 23 0.00051 32.0 5.3 32 201-233 73-104 (322)
304 PRK06436 glycerate dehydrogena 57.2 19 0.00042 32.2 4.7 27 208-234 121-147 (303)
305 PTZ00367 squalene epoxidase; P 57.0 21 0.00046 34.8 5.4 25 210-234 34-58 (567)
306 PRK06481 fumarate reductase fl 57.0 14 0.0003 35.4 4.1 24 211-234 63-86 (506)
307 PF06325 PrmA: Ribosomal prote 56.9 10 0.00022 33.9 2.9 35 206-244 159-195 (295)
308 TIGR01316 gltA glutamate synth 56.9 14 0.0003 34.8 4.0 30 206-235 269-298 (449)
309 PRK14191 bifunctional 5,10-met 56.8 27 0.00058 31.1 5.5 47 188-235 136-184 (285)
310 PF13580 SIS_2: SIS domain; PD 56.6 32 0.00069 26.7 5.4 35 200-234 95-132 (138)
311 PLN02852 ferredoxin-NADP+ redu 56.4 18 0.00039 34.7 4.6 27 208-234 25-53 (491)
312 PTZ00245 ubiquitin activating 56.3 12 0.00027 32.8 3.2 37 209-245 26-62 (287)
313 KOG0685 Flavin-containing amin 56.2 15 0.00032 35.0 3.9 29 206-234 18-46 (498)
314 PLN02572 UDP-sulfoquinovose sy 56.2 19 0.00041 33.9 4.7 28 207-234 45-73 (442)
315 cd05212 NAD_bind_m-THF_DH_Cycl 56.1 67 0.0014 25.3 7.2 46 188-234 7-54 (140)
316 PLN02206 UDP-glucuronate decar 55.7 20 0.00042 33.8 4.8 27 208-234 118-145 (442)
317 PLN02463 lycopene beta cyclase 55.6 16 0.00035 34.5 4.2 24 211-234 30-53 (447)
318 PF00166 Cpn10: Chaperonin 10 55.4 15 0.00032 26.7 3.1 25 85-109 35-68 (93)
319 PLN00141 Tic62-NAD(P)-related 55.2 17 0.00036 31.0 3.9 31 204-234 12-43 (251)
320 PRK14852 hypothetical protein; 54.5 16 0.00035 38.0 4.1 42 208-249 331-372 (989)
321 PRK15469 ghrA bifunctional gly 53.9 23 0.0005 31.8 4.7 27 208-234 135-161 (312)
322 PRK15438 erythronate-4-phospha 53.6 23 0.0005 32.8 4.7 28 207-234 114-141 (378)
323 PRK14982 acyl-ACP reductase; P 53.3 25 0.00053 32.1 4.8 29 207-235 153-183 (340)
324 PRK09496 trkA potassium transp 53.2 23 0.0005 33.0 4.8 28 207-234 229-256 (453)
325 PRK14967 putative methyltransf 52.7 46 0.00099 27.9 6.2 30 202-233 30-59 (223)
326 PRK00257 erythronate-4-phospha 51.9 41 0.0009 31.2 6.1 28 207-234 114-141 (381)
327 COG1249 Lpd Pyruvate/2-oxoglut 51.8 17 0.00037 34.5 3.7 45 207-251 171-215 (454)
328 PLN02985 squalene monooxygenas 51.8 19 0.00041 34.7 4.1 25 210-234 44-68 (514)
329 PRK03562 glutathione-regulated 51.4 22 0.00048 35.1 4.5 37 209-253 400-436 (621)
330 PF01135 PCMT: Protein-L-isoas 50.1 34 0.00073 28.9 4.9 34 200-234 64-97 (209)
331 PRK00141 murD UDP-N-acetylmura 50.1 18 0.00039 34.3 3.6 27 208-234 14-40 (473)
332 KOG1208 Dehydrogenases with di 49.3 26 0.00057 31.5 4.3 28 207-234 33-61 (314)
333 PF05706 CDKN3: Cyclin-depende 49.3 54 0.0012 26.8 5.7 30 205-234 129-161 (168)
334 PRK11790 D-3-phosphoglycerate 49.1 29 0.00063 32.4 4.7 27 208-234 150-176 (409)
335 TIGR03140 AhpF alkyl hydropero 48.5 29 0.00063 33.3 4.7 30 207-236 210-239 (515)
336 PLN02166 dTDP-glucose 4,6-dehy 47.8 32 0.0007 32.3 4.9 28 207-234 118-146 (436)
337 COG1635 THI4 Ribulose 1,5-bisp 47.7 22 0.00047 30.7 3.3 25 210-234 31-55 (262)
338 TIGR01372 soxA sarcosine oxida 47.4 23 0.0005 37.0 4.1 25 210-234 164-188 (985)
339 PRK03659 glutathione-regulated 47.1 27 0.00059 34.3 4.4 37 209-253 400-436 (601)
340 PRK07574 formate dehydrogenase 46.6 34 0.00074 31.8 4.7 27 208-234 191-217 (385)
341 COG0499 SAM1 S-adenosylhomocys 46.5 33 0.00071 31.7 4.4 48 197-253 196-244 (420)
342 PF01946 Thi4: Thi4 family; PD 46.4 23 0.0005 30.3 3.3 24 211-234 19-42 (230)
343 PLN02328 lysine-specific histo 46.2 27 0.00058 35.7 4.2 26 209-234 238-263 (808)
344 PRK12770 putative glutamate sy 46.1 26 0.00056 31.6 3.8 27 208-234 171-197 (352)
345 PF12242 Eno-Rase_NADH_b: NAD( 46.0 40 0.00088 23.8 3.9 31 204-234 34-66 (78)
346 PRK08317 hypothetical protein; 45.8 47 0.001 27.4 5.2 32 200-232 11-42 (241)
347 PRK01710 murD UDP-N-acetylmura 45.3 23 0.0005 33.3 3.5 28 209-236 14-41 (458)
348 COG0234 GroS Co-chaperonin Gro 44.7 35 0.00077 25.1 3.6 23 86-108 37-68 (96)
349 TIGR01373 soxB sarcosine oxida 44.6 27 0.00057 32.0 3.7 37 204-240 25-62 (407)
350 PRK06720 hypothetical protein; 44.5 32 0.00069 27.8 3.8 27 208-234 15-42 (169)
351 PRK08125 bifunctional UDP-gluc 44.5 33 0.00072 34.0 4.6 28 207-234 313-342 (660)
352 PRK11749 dihydropyrimidine deh 43.8 31 0.00068 32.4 4.2 31 205-235 269-299 (457)
353 PRK12779 putative bifunctional 43.4 32 0.00069 35.8 4.4 28 208-235 446-473 (944)
354 PRK05225 ketol-acid reductoiso 42.7 15 0.00033 34.9 1.8 36 207-242 34-69 (487)
355 PRK13748 putative mercuric red 42.5 31 0.00068 33.2 4.0 24 211-234 100-123 (561)
356 COG0031 CysK Cysteine synthase 42.4 47 0.001 29.7 4.8 35 201-235 54-88 (300)
357 PRK07846 mycothione reductase; 42.2 31 0.00067 32.5 3.8 30 209-238 166-195 (451)
358 PRK15409 bifunctional glyoxyla 42.0 40 0.00086 30.4 4.3 27 208-234 144-171 (323)
359 PRK08618 ornithine cyclodeamin 42.0 63 0.0014 29.0 5.7 29 207-235 125-154 (325)
360 PRK07573 sdhA succinate dehydr 42.0 36 0.00078 33.8 4.4 24 211-234 37-60 (640)
361 PRK07121 hypothetical protein; 42.0 27 0.00059 33.2 3.4 24 211-234 22-45 (492)
362 PLN03139 formate dehydrogenase 41.9 40 0.00087 31.3 4.4 27 208-234 198-224 (386)
363 KOG1203 Predicted dehydrogenas 41.7 42 0.00092 31.4 4.5 29 206-234 76-105 (411)
364 PRK12861 malic enzyme; Reviewe 41.5 59 0.0013 33.0 5.8 42 208-249 188-231 (764)
365 PRK12862 malic enzyme; Reviewe 41.4 66 0.0014 32.7 6.1 48 202-249 185-235 (763)
366 PLN02256 arogenate dehydrogena 41.3 63 0.0014 28.9 5.5 35 200-234 27-61 (304)
367 PF01118 Semialdhyde_dh: Semia 41.2 38 0.00083 25.5 3.6 21 211-231 1-22 (121)
368 PLN02306 hydroxypyruvate reduc 40.9 43 0.00092 31.1 4.4 27 208-234 164-191 (386)
369 PRK13942 protein-L-isoaspartat 40.9 87 0.0019 26.1 6.0 33 200-233 68-100 (212)
370 PRK09754 phenylpropionate diox 40.7 51 0.0011 30.2 5.0 31 206-236 141-171 (396)
371 PRK07340 ornithine cyclodeamin 40.6 91 0.002 27.7 6.4 28 207-234 123-151 (304)
372 PRK13403 ketol-acid reductoiso 40.6 37 0.0008 30.9 3.8 32 207-238 14-45 (335)
373 PRK12814 putative NADPH-depend 40.5 57 0.0012 32.4 5.5 31 205-235 319-349 (652)
374 PLN02529 lysine-specific histo 40.3 40 0.00087 34.1 4.4 26 209-234 160-185 (738)
375 PLN02697 lycopene epsilon cycl 40.1 40 0.00086 32.7 4.3 24 211-234 110-133 (529)
376 PTZ00139 Succinate dehydrogena 39.9 41 0.00088 33.2 4.4 24 211-234 31-54 (617)
377 PF13738 Pyr_redox_3: Pyridine 39.8 44 0.00094 27.0 4.0 28 207-234 165-192 (203)
378 PTZ00058 glutathione reductase 39.7 39 0.00085 33.0 4.2 31 208-238 236-266 (561)
379 PRK11207 tellurite resistance 39.5 53 0.0012 27.0 4.5 31 202-234 24-54 (197)
380 TIGR03329 Phn_aa_oxid putative 39.4 37 0.00081 31.9 3.9 24 211-234 26-51 (460)
381 PRK06467 dihydrolipoamide dehy 39.4 38 0.00082 32.0 4.0 30 208-237 173-202 (471)
382 TIGR01421 gluta_reduc_1 glutat 39.3 37 0.00081 31.9 3.9 30 209-238 166-195 (450)
383 PLN02676 polyamine oxidase 39.2 74 0.0016 30.4 5.9 26 209-234 26-51 (487)
384 PRK12810 gltD glutamate syntha 39.0 40 0.00087 31.9 4.1 30 206-235 278-307 (471)
385 COG0446 HcaD Uncharacterized N 38.7 50 0.0011 29.7 4.6 27 209-235 136-162 (415)
386 PRK07804 L-aspartate oxidase; 38.5 32 0.0007 33.2 3.4 24 211-234 18-41 (541)
387 PRK01747 mnmC bifunctional tRN 38.5 36 0.00077 33.8 3.7 25 210-234 261-285 (662)
388 PRK05249 soluble pyridine nucl 38.4 38 0.00083 31.7 3.8 28 208-235 174-201 (461)
389 PF02882 THF_DHG_CYH_C: Tetrah 38.2 73 0.0016 25.7 4.9 47 187-234 14-62 (160)
390 PRK08605 D-lactate dehydrogena 38.1 51 0.0011 29.8 4.4 27 208-234 145-172 (332)
391 PRK12775 putative trifunctiona 38.0 43 0.00094 35.1 4.4 30 206-235 568-597 (1006)
392 PRK07232 bifunctional malic en 37.9 87 0.0019 31.8 6.3 42 208-249 184-227 (752)
393 PLN02464 glycerol-3-phosphate 37.4 40 0.00087 33.3 3.9 25 210-234 72-96 (627)
394 TIGR03452 mycothione_red mycot 37.3 42 0.0009 31.6 3.9 28 209-236 169-196 (452)
395 PRK07251 pyridine nucleotide-d 37.3 42 0.00092 31.2 3.9 28 208-235 156-183 (438)
396 PLN00128 Succinate dehydrogena 37.1 48 0.001 32.9 4.4 24 211-234 52-75 (635)
397 KOG1641 Mitochondrial chaperon 37.1 41 0.00089 25.1 2.9 28 82-109 41-77 (104)
398 PRK06141 ornithine cyclodeamin 37.0 1.2E+02 0.0025 27.1 6.6 28 207-234 123-151 (314)
399 PF10294 Methyltransf_16: Puta 36.9 38 0.00082 27.4 3.1 30 204-234 41-70 (173)
400 PRK06912 acoL dihydrolipoamide 36.8 39 0.00084 31.8 3.6 27 209-235 170-196 (458)
401 TIGR01408 Ube1 ubiquitin-activ 36.7 36 0.00079 35.7 3.6 39 209-247 24-62 (1008)
402 PF03853 YjeF_N: YjeF-related 36.4 89 0.0019 25.1 5.2 38 200-237 16-57 (169)
403 PTZ00317 NADP-dependent malic 36.3 1.1E+02 0.0025 29.8 6.6 41 208-248 296-346 (559)
404 KOG1210 Predicted 3-ketosphing 36.3 1.2E+02 0.0025 27.6 6.2 30 206-235 30-60 (331)
405 PLN02507 glutathione reductase 36.2 47 0.001 31.7 4.1 24 211-234 27-50 (499)
406 TIGR01408 Ube1 ubiquitin-activ 36.1 44 0.00095 35.1 4.0 40 209-248 419-463 (1008)
407 PRK07877 hypothetical protein; 36.0 38 0.00082 34.2 3.5 40 209-249 107-147 (722)
408 PRK12778 putative bifunctional 36.0 44 0.00094 33.8 4.0 29 206-234 567-595 (752)
409 COG0493 GltD NADPH-dependent g 35.9 44 0.00096 31.8 3.8 29 206-234 120-148 (457)
410 PRK05976 dihydrolipoamide dehy 35.7 45 0.00097 31.5 3.8 27 209-235 180-206 (472)
411 PTZ00058 glutathione reductase 35.6 47 0.001 32.4 4.0 24 211-234 50-73 (561)
412 KOG2862 Alanine-glyoxylate ami 35.5 56 0.0012 29.7 4.0 30 205-234 88-117 (385)
413 COG1052 LdhA Lactate dehydroge 35.2 62 0.0013 29.3 4.5 27 208-234 145-171 (324)
414 PRK13944 protein-L-isoaspartat 35.1 1.2E+02 0.0025 25.1 5.9 32 200-232 64-95 (205)
415 PRK13581 D-3-phosphoglycerate 35.1 60 0.0013 31.4 4.6 27 208-234 139-165 (526)
416 PLN02427 UDP-apiose/xylose syn 35.0 52 0.0011 29.9 4.1 26 209-234 14-41 (386)
417 PLN03129 NADP-dependent malic 34.9 1.2E+02 0.0026 29.8 6.5 42 208-249 320-372 (581)
418 PRK07818 dihydrolipoamide dehy 34.9 46 0.001 31.3 3.8 28 208-235 171-198 (466)
419 TIGR00438 rrmJ cell division p 34.8 59 0.0013 26.4 4.0 27 203-229 27-53 (188)
420 COG0062 Uncharacterized conser 34.8 1.3E+02 0.0029 25.3 6.1 51 189-239 29-83 (203)
421 PLN02948 phosphoribosylaminoim 34.7 66 0.0014 31.5 4.9 28 207-234 20-47 (577)
422 cd06919 Asp_decarbox Aspartate 34.7 29 0.00063 26.3 1.9 33 79-111 58-90 (111)
423 PF08541 ACP_syn_III_C: 3-Oxoa 34.7 45 0.00098 23.5 2.9 22 196-217 56-77 (90)
424 TIGR02053 MerA mercuric reduct 34.7 50 0.0011 31.0 3.9 27 209-235 166-192 (463)
425 cd01493 APPBP1_RUB Ubiquitin a 34.6 50 0.0011 31.1 3.8 36 209-244 20-55 (425)
426 KOG1610 Corticosteroid 11-beta 34.6 1.2E+02 0.0026 27.5 6.0 27 208-234 28-55 (322)
427 PRK06370 mercuric reductase; V 34.5 48 0.001 31.1 3.8 28 208-235 170-197 (463)
428 PLN02735 carbamoyl-phosphate s 34.5 35 0.00076 36.2 3.1 43 192-234 6-59 (1102)
429 TIGR01372 soxA sarcosine oxida 34.4 99 0.0022 32.4 6.4 33 202-234 310-342 (985)
430 PRK05479 ketol-acid reductoiso 34.0 52 0.0011 29.9 3.7 28 208-235 16-43 (330)
431 PRK06292 dihydrolipoamide dehy 33.9 51 0.0011 30.8 3.9 28 208-235 168-195 (460)
432 PF10844 DUF2577: Protein of u 33.9 44 0.00096 24.6 2.8 13 98-110 76-88 (100)
433 PF00056 Ldh_1_N: lactate/mala 33.8 75 0.0016 24.7 4.3 24 211-234 2-26 (141)
434 PRK11730 fadB multifunctional 33.6 66 0.0014 32.4 4.8 25 210-234 314-338 (715)
435 COG1086 Predicted nucleoside-d 33.5 73 0.0016 31.2 4.8 27 207-234 248-276 (588)
436 PRK14188 bifunctional 5,10-met 33.4 1E+02 0.0022 27.6 5.4 46 188-234 137-184 (296)
437 PRK04965 NADH:flavorubredoxin 33.3 66 0.0014 29.2 4.4 29 206-234 138-166 (377)
438 PLN00106 malate dehydrogenase 33.3 68 0.0015 29.0 4.4 27 208-234 17-44 (323)
439 TIGR01327 PGDH D-3-phosphoglyc 33.2 67 0.0015 31.0 4.6 27 208-234 137-163 (525)
440 COG0503 Apt Adenine/guanine ph 32.9 90 0.002 25.5 4.7 31 204-234 111-145 (179)
441 PRK13512 coenzyme A disulfide 32.9 94 0.002 29.0 5.5 28 208-235 147-174 (438)
442 PRK06115 dihydrolipoamide dehy 32.8 55 0.0012 30.9 3.9 30 207-236 172-201 (466)
443 PLN03000 amine oxidase 32.7 59 0.0013 33.6 4.3 28 208-235 183-210 (881)
444 PLN02612 phytoene desaturase 32.7 59 0.0013 31.7 4.2 29 206-234 90-118 (567)
445 PF02261 Asp_decarbox: Asparta 32.7 25 0.00054 26.9 1.2 33 79-111 59-91 (116)
446 PRK05472 redox-sensing transcr 32.5 1E+02 0.0023 25.7 5.2 27 201-227 76-102 (213)
447 KOG0399 Glutamate synthase [Am 32.5 48 0.001 35.5 3.5 28 207-234 1783-1810(2142)
448 PLN02661 Putative thiazole syn 32.4 58 0.0013 29.9 3.8 25 210-234 93-118 (357)
449 PF02670 DXP_reductoisom: 1-de 32.4 59 0.0013 25.3 3.4 21 212-232 1-22 (129)
450 PF02254 TrkA_N: TrkA-N domain 32.3 71 0.0015 23.3 3.8 23 212-234 1-23 (116)
451 TIGR03385 CoA_CoA_reduc CoA-di 32.3 93 0.002 28.7 5.3 28 208-235 136-163 (427)
452 PRK13529 malate dehydrogenase; 32.2 1.4E+02 0.0031 29.2 6.5 41 208-248 294-344 (563)
453 PRK06327 dihydrolipoamide dehy 32.2 55 0.0012 30.9 3.8 27 209-235 183-209 (475)
454 TIGR00223 panD L-aspartate-alp 32.2 33 0.00072 26.5 1.9 33 79-111 59-91 (126)
455 PRK14176 bifunctional 5,10-met 32.2 98 0.0021 27.6 5.1 48 187-235 142-191 (287)
456 PRK06116 glutathione reductase 32.2 58 0.0013 30.4 4.0 28 208-235 166-193 (450)
457 PLN02852 ferredoxin-NADP+ redu 31.7 70 0.0015 30.7 4.4 26 206-231 163-188 (491)
458 PLN02487 zeta-carotene desatur 31.7 70 0.0015 31.3 4.5 25 210-234 76-100 (569)
459 PHA01634 hypothetical protein 31.5 47 0.001 26.2 2.6 28 208-237 28-55 (156)
460 PF10686 DUF2493: Protein of u 31.0 93 0.002 21.4 3.8 27 208-234 31-59 (71)
461 PRK08291 ectoine utilization p 30.8 1.8E+02 0.004 26.0 6.8 28 207-234 130-158 (330)
462 PLN02546 glutathione reductase 30.6 65 0.0014 31.4 4.1 24 211-234 81-104 (558)
463 PRK14194 bifunctional 5,10-met 30.5 1.1E+02 0.0024 27.4 5.2 47 188-235 138-186 (301)
464 TIGR01317 GOGAT_sm_gam glutama 30.3 72 0.0016 30.4 4.3 28 207-234 281-308 (485)
465 PTZ00306 NADH-dependent fumara 30.2 58 0.0013 34.8 3.9 24 211-234 411-434 (1167)
466 TIGR01424 gluta_reduc_2 glutat 30.2 60 0.0013 30.3 3.7 28 208-235 165-192 (446)
467 PRK05449 aspartate alpha-decar 30.1 41 0.00089 26.1 2.1 33 79-111 59-91 (126)
468 cd01079 NAD_bind_m-THF_DH NAD 29.8 1.2E+02 0.0025 25.5 4.9 47 188-235 32-89 (197)
469 PLN02602 lactate dehydrogenase 29.5 1.2E+02 0.0026 27.7 5.4 25 210-234 38-62 (350)
470 COG1148 HdrA Heterodisulfide r 29.5 70 0.0015 30.9 3.8 28 207-234 122-149 (622)
471 TIGR02441 fa_ox_alpha_mit fatt 29.4 87 0.0019 31.7 4.8 25 210-234 336-360 (737)
472 PRK06416 dihydrolipoamide dehy 29.4 66 0.0014 30.1 3.8 27 209-235 172-198 (462)
473 TIGR02437 FadB fatty oxidation 29.4 88 0.0019 31.6 4.8 25 210-234 314-338 (714)
474 PRK11761 cysM cysteine synthas 29.4 1.7E+02 0.0038 25.8 6.3 39 202-240 56-94 (296)
475 PRK11199 tyrA bifunctional cho 29.3 2E+02 0.0044 26.4 6.9 27 208-234 97-124 (374)
476 COG0075 Serine-pyruvate aminot 29.2 75 0.0016 29.5 4.0 32 204-235 75-106 (383)
477 PRK14727 putative mercuric red 29.0 59 0.0013 30.8 3.5 29 209-237 188-216 (479)
478 TIGR02992 ectoine_eutC ectoine 28.9 1.8E+02 0.004 26.0 6.5 28 207-234 127-155 (326)
479 TIGR03324 alt_F1F0_F1_al alter 28.8 90 0.002 30.1 4.6 44 191-234 144-190 (497)
480 cd06819 PLPDE_III_LS_D-TA Type 28.7 1.2E+02 0.0025 27.4 5.2 20 96-115 314-333 (358)
481 PRK14189 bifunctional 5,10-met 28.4 1.2E+02 0.0026 27.0 5.0 47 188-235 137-185 (285)
482 TIGR01138 cysM cysteine syntha 28.4 1.8E+02 0.0039 25.5 6.3 40 201-240 51-90 (290)
483 PRK13656 trans-2-enoyl-CoA red 28.1 94 0.002 29.0 4.4 27 207-234 39-68 (398)
484 PF10727 Rossmann-like: Rossma 28.0 44 0.00096 25.8 2.0 26 209-234 10-35 (127)
485 PLN02565 cysteine synthase 27.8 1.5E+02 0.0033 26.6 5.7 40 201-240 58-98 (322)
486 TIGR00080 pimt protein-L-isoas 27.6 1.8E+02 0.0038 24.2 5.8 33 200-233 69-101 (215)
487 KOG0069 Glyoxylate/hydroxypyru 27.5 68 0.0015 29.2 3.4 26 207-232 160-185 (336)
488 PF01113 DapB_N: Dihydrodipico 27.4 87 0.0019 23.7 3.6 24 211-234 2-27 (124)
489 PRK00216 ubiE ubiquinone/menaq 27.3 1.3E+02 0.0029 24.7 5.1 30 202-232 45-74 (239)
490 TIGR01350 lipoamide_DH dihydro 27.1 1.1E+02 0.0024 28.6 4.9 27 208-234 169-195 (461)
491 PLN02507 glutathione reductase 27.0 72 0.0016 30.5 3.6 30 209-238 203-232 (499)
492 PRK13748 putative mercuric red 26.9 75 0.0016 30.6 3.8 31 208-238 269-299 (561)
493 PRK10717 cysteine synthase A; 26.9 2E+02 0.0043 25.8 6.3 39 202-240 57-95 (330)
494 PRK09564 coenzyme A disulfide 26.3 2.4E+02 0.0052 26.0 7.0 29 208-236 148-176 (444)
495 COG4821 Uncharacterized protei 25.8 1.3E+02 0.0029 25.5 4.5 35 200-234 96-133 (243)
496 PRK00811 spermidine synthase; 25.6 72 0.0016 28.0 3.2 28 207-235 75-102 (283)
497 PRK09853 putative selenate red 25.4 1E+02 0.0022 32.5 4.6 30 205-234 664-694 (1019)
498 PRK07845 flavoprotein disulfid 25.3 82 0.0018 29.7 3.7 28 209-236 177-204 (466)
499 PRK08010 pyridine nucleotide-d 25.2 87 0.0019 29.1 3.8 28 208-235 157-184 (441)
500 COG1926 Predicted phosphoribos 25.1 1.2E+02 0.0026 25.8 4.2 35 207-241 122-160 (220)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=3.6e-48 Score=344.44 Aligned_cols=202 Identities=34% Similarity=0.519 Sum_probs=188.6
Q ss_pred cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173 20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (256)
Q Consensus 20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 99 (256)
+++|||+++.++++++++++++.|+|+++||||+|+|+|||++|+|.++|.++. ..+|.++|||.+|+|+++|++|+.|
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~-~~~P~ipGHEivG~V~~vG~~V~~~ 79 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV-PKLPLIPGHEIVGTVVEVGEGVTGL 79 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC-CCCCccCCcceEEEEEEecCCCccC
Confidence 478999999999999999999999999999999999999999999999999998 5599999999999999999999999
Q ss_pred CCCCEEee-ecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 100 REGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 100 ~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
++||+|.+ ....+|+.|++|++|++++|++... .|++.+| +|+||+++++++++++|
T Consensus 80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP 137 (339)
T COG1064 80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIP 137 (339)
T ss_pred CCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECC
Confidence 99999988 7788999999999999999999777 7878888 99999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
+++++++||.+.|+..|.|+++ +.++++||++|+|+|+|++|.+++|+||++|++ ++.++..++++
T Consensus 138 ~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~--------Via~~~~~~K~ 203 (339)
T COG1064 138 EGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE--------VIAITRSEEKL 203 (339)
T ss_pred CCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe--------EEEEeCChHHH
Confidence 9999999999999999999987 569999999999999999999999999999988 56666555543
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=1.2e-43 Score=311.00 Aligned_cols=223 Identities=43% Similarity=0.774 Sum_probs=210.7
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
+++|++++.++++||+++++++++|+++|||||+.|+|+|++|.+.++|..|. .||.++|||++|+|+++|+.|+.++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vk 78 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVK 78 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccC
Confidence 46899999999999999999999999999999999999999999999999998 4999999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|+..+.+.|++|+.|.+|..++|...+.+...|...||+.|++ -.+...++.+|.++|+||.++++..+++++++
T Consensus 79 pGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~ 157 (366)
T COG1062 79 PGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPD 157 (366)
T ss_pred CCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCC
Confidence 99999999999999999999999999999888888999999999999 88888999999999999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
.+++.++++.|...|.+.+....+++++|++|.|+|.|++|++++|-|+..|+.+ ++.++-+++++
T Consensus 158 ~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~-------IiAvD~~~~Kl 223 (366)
T COG1062 158 APLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGR-------IIAVDINPEKL 223 (366)
T ss_pred CCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCce-------EEEEeCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999986 45555555544
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-42 Score=300.84 Aligned_cols=228 Identities=53% Similarity=0.928 Sum_probs=212.6
Q ss_pred cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173 18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
.++.++||++..++++||.++|+.+++|+.+||+||++++++|++|.+.++|..+. ..||.++|||++|+|+++|..|+
T Consensus 3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCcc
Confidence 56889999999999999999999999999999999999999999999999999754 68999999999999999999999
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~ 176 (256)
++++||+|+..+.+.|++|.+|+++..|+|...+...+.+.. .||..||+ -+|.++++-++..+|+||.++++..+.+
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k 160 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK 160 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence 999999999999999999999999999999998887655554 59999999 8899999999999999999999999999
Q ss_pred cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173 177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS 254 (256)
Q Consensus 177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~ 254 (256)
++++.+++.++.+.|.+.|+|.|.+..+++++|+++.|+|.|++|+++++-||+.||.+ ++.++-++++++
T Consensus 161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsr-------IIgvDiN~~Kf~ 231 (375)
T KOG0022|consen 161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASR-------IIGVDINPDKFE 231 (375)
T ss_pred cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCccc-------EEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 556665555543
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-42 Score=298.78 Aligned_cols=203 Identities=30% Similarity=0.429 Sum_probs=183.4
Q ss_pred CcccccccceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEc
Q 025173 15 STAGKIIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV 92 (256)
Q Consensus 15 ~~~~~~~t~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~v 92 (256)
++...|.++++|.+..+++ ++++.+++.|+|+++||+|+|+|+|||++|+|.+.|.++. .++|.++|||++|+|+++
T Consensus 2 ~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 2 SSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE
Confidence 3456689999999999988 4667999999999999999999999999999999999998 889999999999999999
Q ss_pred cCCCcccCCCCEEee-ecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 93 GGGVEEVREGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 93 G~~v~~~~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
|++|+.|++||+|-+ ....+|..|++|+++.|++|++...+ +.|...||+..+ |+||+|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DGt~~~--------------ggf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDGTITQ--------------GGFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCCCCcc--------------CccceeEEEee
Confidence 999999999999965 44667999999999999999964442 356677774333 49999999999
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+++++|++++.+.||.+.|+..|.|..| ...++.||++|.|.|+|++|.+++|+||++|.+
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r 207 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR 207 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCcE
Confidence 99999999999999999999999999976 678889999999999977999999999999999
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-40 Score=289.42 Aligned_cols=190 Identities=27% Similarity=0.453 Sum_probs=175.4
Q ss_pred ccceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCc
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
.+|+|+++.++++ +++++.|.|++ .++||+|++.++|||+||+|.+...... ..+.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4699999999999 99999999987 8999999999999999999999877654 245799999999999999999999
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~ 176 (256)
++++||||++.+..+|+.|+.|++|++|+|++..+ .+. ..+| ++++|++.+++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G-------------------~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG-------------------TLAEYYVHPADFCYK 139 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC-------------------ceEEEEEechHheee
Confidence 99999999999999999999999999999999887 332 3445 999999999999999
Q ss_pred cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+||++|++++|++. +++++||| .+++++++|++|||+|||++|+.+...||++|+.+
T Consensus 140 LPd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~ 196 (354)
T KOG0024|consen 140 LPDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASD 196 (354)
T ss_pred CCCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCc
Confidence 99999999999987 79999997 58999999999999999999999999999999985
No 6
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=5.4e-38 Score=287.98 Aligned_cols=222 Identities=54% Similarity=0.949 Sum_probs=180.9
Q ss_pred cccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173 16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG 95 (256)
Q Consensus 16 ~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~ 95 (256)
+.++|++||++++.++++++.++++|.|.|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus 4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~ 83 (381)
T PLN02740 4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG 83 (381)
T ss_pred ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence 34578899999999998778899999999999999999999999999999999876433467999999999999999999
Q ss_pred CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCC-CCCCCCcccccCC--CceeeccccccceeeeEEecCC
Q 025173 96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLK--GEVIHNVLNVSSFTEYTVVDVT 172 (256)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~--~~~~~~~~~~g~~aey~~v~~~ 172 (256)
++.|++||+|++.+...|+.|++|+.+.++.|++.......+ ...+|..+++ .. +....+....|+|+||++++.+
T Consensus 84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~G~~aey~~v~~~ 162 (381)
T PLN02740 84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFS-TKGDGQPIYHFLNTSTFTEYTVLDSA 162 (381)
T ss_pred CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccc-cccCCCcccccccCccceeEEEEehH
Confidence 999999999999998999999999999999998865311000 0000100000 00 0000000012599999999999
Q ss_pred cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.++++|+++++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+++.
T Consensus 163 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~ 228 (381)
T PLN02740 163 CVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIG 228 (381)
T ss_pred HeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEE
Confidence 999999999999999999999999998888899999999999999999999999999999964433
No 7
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=1.4e-36 Score=277.35 Aligned_cols=213 Identities=44% Similarity=0.821 Sum_probs=176.7
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++...+..++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~G 80 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVG 80 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCC
Confidence 899999988877999999999999999999999999999999999987654 4679999999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|+.|.+|+.+..++|.+.......|...+|..++. ..|...++..+.|+|+||++++.+.++++|++++
T Consensus 81 drV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~ 159 (368)
T TIGR02818 81 DHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP 159 (368)
T ss_pred CEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCC
Confidence 999998888999999999999999987542211222222211110 0000000111235999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
+++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+++
T Consensus 160 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi 214 (368)
T TIGR02818 160 LEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRII 214 (368)
T ss_pred HHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999988889999999999999999999999999999995433
No 8
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=4e-36 Score=274.24 Aligned_cols=213 Identities=51% Similarity=0.899 Sum_probs=177.1
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
.+||++++...+.+++++++|.|+|+++||+||+++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~ 79 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK 79 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence 36899999888777999999999999999999999999999999999987654 46799999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+...|+.|.+|+.++++.|++.....+.|...+|..++. -.|...++..+.|+|+||+.++++.++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 158 (368)
T cd08300 80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPE 158 (368)
T ss_pred CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCC
Confidence 99999988888999999999999999987543211222222210100 00000011112359999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+
T Consensus 159 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~ 213 (368)
T cd08300 159 APLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASR 213 (368)
T ss_pred CChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 9999999999999999998888899999999999999999999999999999953
No 9
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=2.8e-36 Score=275.15 Aligned_cols=215 Identities=56% Similarity=0.967 Sum_probs=176.8
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
++|||+++..+++++++++++.|+|+++|||||+.+++||++|++.+.|..+. ..+|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLK 79 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCccc
Confidence 47999999988877999999999999999999999999999999999987653 46789999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCC-CcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G-~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
+||+|+..+...|+.|.+|+.+.++.|.+.......|....+ ..++. ..|...+.....|+|+||++++.+.++++|+
T Consensus 80 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~ 158 (369)
T cd08301 80 PGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINP 158 (369)
T ss_pred cCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCC
Confidence 999999988889999999999999999885432111111100 00000 0000000001125899999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
++++++++.+++.+.|||+++.+.+++++|++|||+|+|++|++++|+|+..|+.+++
T Consensus 159 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi 216 (369)
T cd08301 159 EAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRII 216 (369)
T ss_pred CCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999888889999999999999999999999999999985333
No 10
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=2.6e-36 Score=275.06 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=174.4
Q ss_pred CCcccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc
Q 025173 14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG 93 (256)
Q Consensus 14 ~~~~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG 93 (256)
++-.+.|+.++++.+.+....+++.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG 82 (360)
T PLN02586 4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLG 82 (360)
T ss_pred ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEEC
Confidence 455567888999988887666888999999999999999999999999999999887653 4578999999999999999
Q ss_pred CCCcccCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCC----CCCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173 94 GGVEEVREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168 (256)
Q Consensus 94 ~~v~~~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~ 168 (256)
++|++|++||+|+..+ ...|+.|.+|+.|.+++|++..... ..|...+| +|+||++
T Consensus 83 ~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~ 143 (360)
T PLN02586 83 KNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG-------------------GYSDMIV 143 (360)
T ss_pred CCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC-------------------ccceEEE
Confidence 9999999999998544 3579999999999999998754310 01222234 9999999
Q ss_pred ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++.++++|+++++++|+.+.+.+.|+|+++.+...+++|++|||.|+|++|++++|+||.+|++
T Consensus 144 v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~ 209 (360)
T PLN02586 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK 209 (360)
T ss_pred EchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999876667778999999999999999999999999997
No 11
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=6.9e-36 Score=272.95 Aligned_cols=210 Identities=44% Similarity=0.731 Sum_probs=173.2
Q ss_pred ceeEEEecCCC--------CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173 23 CRAAISRIPGK--------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 23 ~ka~~~~~~g~--------~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
|||+++.++|. .++++++|.|+|+++||||||.+++||++|++.+.|.++. .+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~ 78 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE 78 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence 79999998763 3899999999999999999999999999999999987653 5789999999999999999
Q ss_pred CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (256)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~ 174 (256)
++.++++||+|++.+...|+.|.+|+.|.+++|.+.......|...+|..++....+. ..+..+.|+|+||+.++++++
T Consensus 79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~-~~~~~g~G~~aey~~v~~~~~ 157 (371)
T cd08281 79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGE-INHHLGVSAFAEYAVVSRRSV 157 (371)
T ss_pred CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcc-cccccCcccceeeEEecccce
Confidence 9999999999998777789999999999999998764321122221211111000000 000112359999999999999
Q ss_pred EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++|+++++++|+.+.+++.|||+++.+.+++++|++|||.|+|++|++++|+||.+|+.+
T Consensus 158 ~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~ 218 (371)
T cd08281 158 VKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQ 218 (371)
T ss_pred EECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999998888889999999999999999999999999999963
No 12
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=8.6e-36 Score=268.39 Aligned_cols=190 Identities=29% Similarity=0.485 Sum_probs=170.5
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++.+++. ++++++|.|+|+++||+||+.+++||++|++.+.+.+.....+|.++|||++|+|+++|++|++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999998776 99999999999999999999999999999999877643223468999999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|+..+...|+.|++|+.+++++|.+... ..|...+| +|+||+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence 999999888999999999999999987543 23333445 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++|+.+++++.|||+++ +.+.+++|++|||+|+|++|++++|+||.+|+++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~ 190 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAED 190 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 999999999999999986 5678999999999999999999999999999984
No 13
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=3.2e-35 Score=269.54 Aligned_cols=213 Identities=51% Similarity=0.896 Sum_probs=172.2
Q ss_pred ccccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173 17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96 (256)
Q Consensus 17 ~~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v 96 (256)
.+....||++++.++++.++++++|.|+|+++||+|||.+++||++|++.+.+.. .+|.++|||++|+|+++|+++
T Consensus 7 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v 82 (378)
T PLN02827 7 QPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGV 82 (378)
T ss_pred CcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCC
Confidence 3444679999999887669999999999999999999999999999999987752 468899999999999999999
Q ss_pred cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCC-CCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173 97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV 175 (256)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~ 175 (256)
++|++||+|++.+...|+.|.+|+.+.+++|++.... ..|... ++..+|. ..|.........|+|+||+.++++.++
T Consensus 83 ~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~ 160 (378)
T PLN02827 83 TEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAV 160 (378)
T ss_pred cccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheE
Confidence 9999999999988889999999999999999874210 001000 0000000 000000000012599999999999999
Q ss_pred EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++|+++++++++.+.+++.++|+++.+.+++++|++|||+|+|++|++++|+||.+|+..
T Consensus 161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~ 220 (378)
T PLN02827 161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQ 220 (378)
T ss_pred ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 999999999999999899999998777889999999999999999999999999999874
No 14
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=2.3e-35 Score=268.17 Aligned_cols=204 Identities=36% Similarity=0.616 Sum_probs=173.8
Q ss_pred cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|||++++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.++. .+|.++|||++|+|+++|+++++|++
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~ 78 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAP 78 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCC
Confidence 6999999999988999999999999999999999999999999999887643 57899999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
||+|++.+...|+.|.+|..++.++|....... .... .+| .......+.|+|+||+.++++.++++|++
T Consensus 79 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~ 148 (358)
T TIGR03451 79 GDYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPA 148 (358)
T ss_pred CCEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC---------cccccccccccccceEEEehhheEECCCC
Confidence 999999888899999999999999997532210 0000 001 00000011359999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
+++++|+.+++.+.|+|+++.+.+.+++|++|||+|+|++|++++|+||.+|+.+++
T Consensus 149 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi 205 (358)
T TIGR03451 149 ADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKII 205 (358)
T ss_pred CChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 999999999999999999888888999999999999999999999999999987433
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=3.8e-35 Score=270.38 Aligned_cols=195 Identities=29% Similarity=0.393 Sum_probs=163.4
Q ss_pred cceeEEEecCCCCcEEEEeecCCCC-------CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccC
Q 025173 22 RCRAAISRIPGKPLVMEEIEVDPPK-------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 22 t~ka~~~~~~g~~l~~~~~~~p~~~-------~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
-||++++.++++ ++++++|.|+|+ +|||||||.++|||++|++.+.|.++. .+|.++|||++|+|+++|+
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~ 78 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGR 78 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcC
Confidence 489999999887 999999999874 689999999999999999999887543 5789999999999999999
Q ss_pred CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCC---CCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
+|++|++||||++.+...|+.|.+|+.|++++|.+..... ..|....| .| .|+|+||++++.
T Consensus 79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-----~~----------~G~~aey~~v~~ 143 (393)
T TIGR02819 79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-----GW----------VGGQSEYVMVPY 143 (393)
T ss_pred ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC-----CC----------CCceEEEEEech
Confidence 9999999999999888899999999999999998743210 01110000 01 139999999996
Q ss_pred C--cEEEcCCCCCh----hhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 172 T--HVVKITPDIPL----DIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 172 ~--~~~~~p~~l~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
. +++++|++++. ++++.+.+++.++|+++ +++++++|++|||.|+|++|++++|+|+.+|++.
T Consensus 144 ~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~ 212 (393)
T TIGR02819 144 ADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAV 212 (393)
T ss_pred hhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCce
Confidence 3 79999998754 34667778999999976 5688999999999999999999999999999984
No 16
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=1e-34 Score=264.62 Aligned_cols=213 Identities=52% Similarity=0.936 Sum_probs=176.9
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
+.||++++...+++++++++|.|.++++||+|||.++++|++|++.+.|.++ ..+|.++|||++|+|+++|+++++++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLK 78 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCC
Confidence 4689999988777799999999999999999999999999999999998765 36789999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+...|+.|.+|+.+.+++|++.... ..|...+++.++. ..|.-.....+.|+|+||+.++.+.++++|++
T Consensus 79 ~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~ 156 (365)
T cd08277 79 PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPA 156 (365)
T ss_pred CCCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCC
Confidence 999999988889999999999999999885431 1222222211110 00000000112358999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
+++++++.+.+++.|||+++.+.+++++|++|+|+|+|++|++++|+|+++|+.+++
T Consensus 157 l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi 213 (365)
T cd08277 157 APLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRII 213 (365)
T ss_pred CCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Confidence 999999999999999999887888999999999999999999999999999986433
No 17
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=259.14 Aligned_cols=166 Identities=30% Similarity=0.427 Sum_probs=151.6
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++++.+.+ ++++++|.|+|+++||||||.|++||+.|.+.++|..+...++|+++|.|++|+|+++|+.|+.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 789999998877 888999999999999999999999999999999998444356999999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|+... . .+ .+| +|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~-~------------------------~~--~~G-------------------~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALG-G------------------------VG--RDG-------------------GYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEcc-C------------------------CC--CCC-------------------cceeEEEecHHHceeCCCC
Confidence 999998653 1 00 233 9999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++||++++++.|||+++.+..++++|++|||+|+ |++|++++||||+.|+.
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~ 169 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT 169 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc
Confidence 9999999999999999999999899999999999987 99999999999999985
No 18
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=2e-34 Score=260.52 Aligned_cols=188 Identities=20% Similarity=0.364 Sum_probs=160.5
Q ss_pred cccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHc-CCCCC-CCCCCeeeeeeeeEEEEEccCCCc
Q 025173 20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 20 ~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
...+|++++.+++. +++++++.| ++++||||||.++|||++|++.+. |.++. ...+|.++|||++|+|+++ +++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 35689999998888 999999987 689999999999999999999875 43321 2357999999999999999 688
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-----CCCCCcccccCCCceeeccccccceeeeEEecCC
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-----PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT 172 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-----~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~ 172 (256)
+|++||+|+..+..+|+.|.+|+.+.+++|++... .|. ..+| +|+||++++++
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~~~~~G-------------------~~aey~~v~~~ 135 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYFPHVDG-------------------GFTRYKVVDTA 135 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccccCCCCC-------------------ceeeeEEechH
Confidence 99999999998888999999999999999988654 221 1234 99999999999
Q ss_pred cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.++++|+++++++++. ..++++||+++ +.....+|++|+|+|+|++|++++|+|+.+|+++
T Consensus 136 ~~~~~P~~l~~~~aa~-~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~ 196 (343)
T PRK09880 136 QCIPYPEKADEKVMAF-AEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAE 196 (343)
T ss_pred HeEECCCCCCHHHHHh-hcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 9999999999987664 45778999986 4556678999999999999999999999999964
No 19
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=3.2e-34 Score=258.24 Aligned_cols=186 Identities=24% Similarity=0.355 Sum_probs=164.6
Q ss_pred eEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 25 AAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 25 a~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
++++..+|. .++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFA 79 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccC
Confidence 355666653 3889999999999999999999999999999999997654 34578999999999999999999999
Q ss_pred CCCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 101 EGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 101 vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
+||+|+..+. ..|+.|.+|+.+.+++|++... .|...+| +|+||+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~ 137 (329)
T TIGR02822 80 VGDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPT 137 (329)
T ss_pred CCCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCC
Confidence 9999987553 4699999999999999988654 3444455 999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++++.+++.+.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|++
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~ 191 (329)
T TIGR02822 138 GYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT 191 (329)
T ss_pred CCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe
Confidence 999999999999999999987 568899999999999999999999999999987
No 20
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=260.07 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=154.1
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCe-eeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR-ILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~-~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|+++++..++....+++.+.|.+.++||+|||.++|||+||++.+.+..+. ...+. ++|||++|+|+++| .++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~-~~~~~~i~GHE~~G~V~evG-~~~~~~~ 78 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF-VPPGDIILGHEFVGEVVEVG-VVRGFKV 78 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC-CCCCCcccCccceEEEEEec-cccCCCC
Confidence 566777766653447777777778999999999999999999999998765 33444 99999999999999 7788999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccC--CCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE-cC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNK--DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK-IT 178 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~-~p 178 (256)
||+|++.+..+|+.|.+|+.|.+++|++..+. ...+...+| +|+||+.+|.++++. +|
T Consensus 79 GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~p 139 (350)
T COG1063 79 GDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLP 139 (350)
T ss_pred CCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCC
Confidence 99999999999999999999999999965431 111112344 999999999755555 57
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++ ..+++++..+++++|++........++++|+|+|+|++|++++++|+..|+..
T Consensus 140 d~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~ 195 (350)
T COG1063 140 DGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASV 195 (350)
T ss_pred CCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCce
Confidence 888 55556666699999886455566667779999999999999999999999984
No 21
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.6e-33 Score=258.08 Aligned_cols=190 Identities=25% Similarity=0.341 Sum_probs=160.2
Q ss_pred eEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCE
Q 025173 25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDL 104 (256)
Q Consensus 25 a~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~ 104 (256)
++++.+.++.+.+.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdr 87 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDR 87 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCE
Confidence 3444444445888889999999999999999999999999999887643 357899999999999999999999999999
Q ss_pred Eeeeccc-CCCCCcccCCCCCCCCCcCccCC----CCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 105 VLPVFQG-DCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 105 V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
|+..+.. .|+.|.+|+.|.+++|++..... ..|...+| +|+||+.++++.++++|+
T Consensus 88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~lP~ 148 (375)
T PLN02178 88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQG-------------------GYSDVIVVDHRFVLSIPD 148 (375)
T ss_pred EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCC-------------------ccccEEEEchHHeEECCC
Confidence 9865543 69999999999999999864310 01222234 999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++++.+.+...|+|+++.+... .++|++|+|.|+|++|++++|+||++|++
T Consensus 149 ~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~ 204 (375)
T PLN02178 149 GLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLR 204 (375)
T ss_pred CCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCe
Confidence 99999999999999999998754433 36899999999999999999999999997
No 22
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=2.5e-33 Score=254.97 Aligned_cols=194 Identities=27% Similarity=0.378 Sum_probs=169.3
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
..++++++..+++++.+++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence 34899999999988999999999999999999999999999999999887643 35789999999999999999999999
Q ss_pred CCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCC----CCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEE
Q 025173 101 EGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDN----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV 175 (256)
Q Consensus 101 vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~----~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~ 175 (256)
+||+|+..+ ...|+.|.+|+.+.+++|.+.....+ .|...+ |+|+||++++.+.++
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~ 147 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQ-------------------GGFASAMVVDQKFVV 147 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCC-------------------CccccEEEEchHHeE
Confidence 999998544 34699999999999999987532100 111123 399999999999999
Q ss_pred EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++|+++++++++.+++++.|||+++.+....++|++|+|+|+|++|++++|+||.+|++
T Consensus 148 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~ 206 (357)
T PLN02514 148 KIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH 206 (357)
T ss_pred ECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCe
Confidence 99999999999999999999999886666678999999999999999999999999987
No 23
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=2.6e-33 Score=254.32 Aligned_cols=189 Identities=25% Similarity=0.379 Sum_probs=154.8
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCC--CCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||+++++..+..++++++|.|+|+++||||||+|++||++|++.+.|.++.. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 6899998654339999999999999999999999999999999999875431 246899999999999999999 9999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
+||+|+..+...|+.|.+|+.+++++|++.... ..|. ..+| +|+||++++++.++++|+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~G-------------------~~aey~~~~~~~~~~~P~ 139 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLHG-------------------FMREYFVDDPEYLVKVPP 139 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCCc-------------------cceeEEEeccccEEECCC
Confidence 999999888888999999999999999875421 1121 1233 999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHH------HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAW------KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~------~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++ +. +.+..++.+++.++. +...+++|++|+|+|+|++|++++|+||.+|++
T Consensus 140 ~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~ 198 (355)
T cd08230 140 SLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFE 198 (355)
T ss_pred CCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 999 44 344445555444332 223367899999999999999999999999996
No 24
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=6.9e-33 Score=253.54 Aligned_cols=215 Identities=50% Similarity=0.839 Sum_probs=176.0
Q ss_pred cccccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173 18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 18 ~~~~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
.+-.+||++++..++.+++++++|.|++.++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~ 80 (373)
T cd08299 3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVT 80 (373)
T ss_pred cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCc
Confidence 34567999999888777999999999999999999999999999999999987643 5788999999999999999999
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
.+++||+|++.+..+|+.|.+|+.++++.|++.......|...++..++. -.|...+.....|+|+||+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~l 159 (373)
T cd08299 81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKI 159 (373)
T ss_pred cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeC
Confidence 99999999998888999999999999999987542100111111100000 00000111111359999999999999999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
|+++++++++.+.+++.|||+++.+.+++++|++|+|+|+|++|++++++|+++|+.+
T Consensus 160 P~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~ 217 (373)
T cd08299 160 DAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASR 217 (373)
T ss_pred CCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999998888899999999999999999999999999999853
No 25
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.9e-33 Score=252.09 Aligned_cols=185 Identities=26% Similarity=0.434 Sum_probs=163.3
Q ss_pred EEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEE
Q 025173 26 AISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105 (256)
Q Consensus 26 ~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V 105 (256)
+++++++.+++++++|.|.|+++||+|||.++++|++|++.+.+.+.....+|.++|||++|+|+++|+++..+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 56777887789999999999999999999999999999998754432224678999999999999999999887 99999
Q ss_pred eeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC------
Q 025173 106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP------ 179 (256)
Q Consensus 106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~------ 179 (256)
+..+...|+.|.+|+.+++++|.+... .|...+| +|+||+.++.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence 998888999999999999999987544 3333345 999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++++.+.+++.|+|+++ +...+++|++|+|+|+|++|++++|+|+.+|++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~ 192 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA 192 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 899999999999999999986 458899999999999999999999999999986
No 26
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=1e-32 Score=249.59 Aligned_cols=184 Identities=19% Similarity=0.241 Sum_probs=151.7
Q ss_pred cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---MAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
..|+++++++++ ++++++|.|. +++||||||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|.. .
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 457899999987 9999999995 9999999999999999999999987532 1357999999999999998764 7
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
|++||+|+..+...|+ |..| +..++|.+... .|...+| +|+||+++++++++++|
T Consensus 78 ~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~vP 132 (341)
T cd08237 78 YKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKLP 132 (341)
T ss_pred cCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEECC
Confidence 9999999988776676 4455 45678876543 2323345 99999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHH--hcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCc
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWK--VAEVEEGSTVAIFGLGAVGLSVLIRIHL-KFTRH 235 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~GaG~vG~~aiqla~~-~G~~~ 235 (256)
+++++++||++. +++++|+++.. .+.+++||+|||+|+|++|++++|+|+. .|+.+
T Consensus 133 ~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~ 191 (341)
T cd08237 133 DNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESK 191 (341)
T ss_pred CCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCc
Confidence 999999887554 88889998754 3457899999999999999999999996 56553
No 27
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-32 Score=245.90 Aligned_cols=186 Identities=27% Similarity=0.462 Sum_probs=161.1
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++++++. +++++.|.|+| +++||+|||.++++|++|++.+..... ..+|.++|||++|+|+++|+++++|++
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~v 77 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHP 77 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCC
Confidence 79999998876 99999999997 589999999999999999976432211 236789999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.+...|+.|.+|+.|.+++|.+... .|...+| +|+||+.++++.++++|+++
T Consensus 78 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~ 135 (347)
T PRK10309 78 GDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDM 135 (347)
T ss_pred CCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCC
Confidence 9999999888999999999999999987543 3333445 99999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++++|+.+. .+.++|++ .+...+++|++|+|+|+|++|++++|+|+.+|++.
T Consensus 136 s~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~ 187 (347)
T PRK10309 136 PIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKS 187 (347)
T ss_pred CHHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 999998774 45667886 46788899999999999999999999999999973
No 28
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=1.8e-31 Score=243.30 Aligned_cols=210 Identities=49% Similarity=0.883 Sum_probs=179.9
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
+||+++.+++.++++++++.|.++++||+||+.++++|++|++.+.+.++. .+|.++|||++|+|+++|++++++++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~G 78 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPG 78 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCC
Confidence 478899888777999999999999999999999999999999999887653 567899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|+.|.+|+.+++++|.........|...+|..+|.. .|.+.++..+.|+|++|+.++.+.++++|++++
T Consensus 79 d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~ 157 (365)
T cd05279 79 DKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP 157 (365)
T ss_pred CEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCC
Confidence 9999988889999999999999999886654344444444333321 222223333446999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++.+.+++.+||+++.+.+++++|++|||+|+|++|++++|+|+.+|+..
T Consensus 158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~ 210 (365)
T cd05279 158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASR 210 (365)
T ss_pred HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 99999999999999998888899999999999988999999999999999873
No 29
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=1.1e-31 Score=243.70 Aligned_cols=194 Identities=28% Similarity=0.475 Sum_probs=168.6
Q ss_pred eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc-----
Q 025173 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE----- 98 (256)
Q Consensus 24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~----- 98 (256)
|++++.++++.+++++++.|.|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~ 80 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGE 80 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCC
Confidence 78999998866999999999999999999999999999999999988763 357899999999999999999986
Q ss_pred -cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCC-CCcccccCCCceeeccccccceeeeEEecCC-cEE
Q 025173 99 -VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD-GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-HVV 175 (256)
Q Consensus 99 -~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~-~~~ 175 (256)
|++||+|++.+..+|+.|.+|+.+.++.|.+... .|...+ |.. ...|+|+||+.++++ .++
T Consensus 81 ~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~~~-------------~~~g~~a~~~~v~~~~~~~ 144 (361)
T cd08231 81 PLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCDDP-------------HLSGGYAEHIYLPPGTAIV 144 (361)
T ss_pred ccCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccccCC-------------CCCcccceEEEecCCCceE
Confidence 9999999999888999999999999999988654 222110 000 001499999999986 799
Q ss_pred EcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 176 KITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++|++++.++++.+++++.|||+++.+....++|++|||+|+|++|++++|+|+.+|+.
T Consensus 145 ~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~ 203 (361)
T cd08231 145 RVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGAR 203 (361)
T ss_pred ECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 99999999999998899999999987766677999999999999999999999999994
No 30
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.98 E-value=4.4e-31 Score=238.94 Aligned_cols=187 Identities=30% Similarity=0.469 Sum_probs=163.4
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-CC---------CCCCCeeeeeeeeEEEEEc
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PP---------MAVFPRILGHEAVGVVESV 92 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~~---------~~~~p~~~G~e~vG~Vv~v 92 (256)
||++++.++++ +++++++.|+|+++||+||+.++++|++|++.+.+.. .. ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 79999998876 9999999999999999999999999999998775431 11 0236899999999999999
Q ss_pred cCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 93 GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 93 G~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
|+++++|++||+|+..+...|+.|.+|+.+.+++|.+... .|.. .+| +|+||+.++.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~a~~~~~~~ 137 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG-------------------GFAEYVVVPA 137 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC-------------------ceeeEEEech
Confidence 9999999999999998888999999999999999986542 2221 134 9999999999
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.++++|+++++++++.+ .++.|||+++ +.+++++|++|+|+|+|++|++++|+|+.+|++
T Consensus 138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~ 198 (351)
T cd08233 138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGAS 198 (351)
T ss_pred HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 999999999999998876 5778999987 788999999999999999999999999999995
No 31
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.98 E-value=6.5e-31 Score=236.40 Aligned_cols=188 Identities=30% Similarity=0.493 Sum_probs=167.9
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++++++..++++++|.|+++++||+||+.++++|++|++.+.|..+. ..+|.++|||++|+|+++|+++.++++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~G 79 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVG 79 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCC
Confidence 799999998656999999999999999999999999999999999887643 3568899999999999999999999999
Q ss_pred CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
|+|++.+ ...|+.|.+|+.|+.+.|.+... .|...+| +|++|+.++.+.++++|+++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~ 137 (333)
T cd08296 80 DRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDL 137 (333)
T ss_pred CEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCC
Confidence 9998754 46799999999999999987654 3333334 89999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++.+++++.|||+++. ..++.++++|||+|+|++|++++|+|+.+|+.
T Consensus 138 ~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~ 189 (333)
T cd08296 138 DAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR 189 (333)
T ss_pred CHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe
Confidence 99999999999999999874 45899999999999999999999999999987
No 32
>PRK10083 putative oxidoreductase; Provisional
Probab=99.98 E-value=5.6e-31 Score=236.72 Aligned_cols=187 Identities=30% Similarity=0.540 Sum_probs=165.2
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++.+++. +++++++.|.|+++||+||+.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++..+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 78 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIG 78 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCC
Confidence 78999998886 999999999999999999999999999999999887654 3578999999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|+..+...|+.|.+|..+++++|.+... .+...+| +|+||+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~~ 136 (339)
T PRK10083 79 ERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG-------------------GFSEYAVVPAKNAHRIPDAIA 136 (339)
T ss_pred CEEEEccccCCCCCccccCcCcccCCCCce---EEEccCC-------------------cceeeEEechHHeEECcCCCC
Confidence 999998888899999999999999976543 2222234 899999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHL-KFTRH 235 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~-~G~~~ 235 (256)
+++++ +...+.++|. +.+.+++++|++|+|+|+|++|++++|+|+. +|+..
T Consensus 137 ~~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~ 188 (339)
T PRK10083 137 DQYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKA 188 (339)
T ss_pred HHHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCE
Confidence 98876 4457788886 5678899999999999999999999999996 59874
No 33
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.98 E-value=6.9e-31 Score=236.07 Aligned_cols=190 Identities=31% Similarity=0.460 Sum_probs=172.0
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+++.++++.+.+.|+++++||+||+.++++|++|++.+.|.++. ...+|.++|+|++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 789999988777999999999999999999999999999999999887652 345688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.....|+.|..|..|..++|++... .|...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence 99999999888899999999999999999887 4554455 9999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLKF-TR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~G-~~ 234 (256)
+++++++.+++.+.|||+++.+. ..+.++++|||+|+|.+|++++|+|+.+| ..
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~ 194 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPAT 194 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 99999999999999999987665 46889999999999889999999999999 45
No 34
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.98 E-value=6.9e-31 Score=239.47 Aligned_cols=212 Identities=36% Similarity=0.707 Sum_probs=174.0
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
++|||+++.+++.++++++.+.|++.++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLK 78 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCC
Confidence 57999999987777999999999999999999999999999999999887653 4688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceee-ccccccceeeeEEecCCcEEEcCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIH-NVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~-~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
+||+|++.+. .|+.|.+|+.++.++|.+.......+...+|...+...+|-+++ .....|+|++|+.++.+.++++|+
T Consensus 79 ~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 79 PGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 9999998764 79999999999999998654322222222220000000000000 011235999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++++++++.+++++.||+.++.+.+.+++|++|+|+|+|++|++++|+|+..|+.+
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~ 213 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTT 213 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 99999999999999999998888889999999999988999999999999999974
No 35
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=3.1e-31 Score=227.34 Aligned_cols=195 Identities=23% Similarity=0.354 Sum_probs=174.6
Q ss_pred cCCCcccccccceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEE
Q 025173 12 NASSTAGKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88 (256)
Q Consensus 12 ~~~~~~~~~~t~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~ 88 (256)
.++++..++...|++++.++|+| ++++++++|....++|+||.+|+.||++|+..++|.||..+.+|.+-|.|++|+
T Consensus 9 ~~ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~e 88 (354)
T KOG0025|consen 9 SSSSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGE 88 (354)
T ss_pred ecccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEE
Confidence 44555567888999999999998 778889999888888999999999999999999999999899999999999999
Q ss_pred EEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEE
Q 025173 89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168 (256)
Q Consensus 89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~ 168 (256)
|+.+|++++.|++||.|+..... .|+|++|.+
T Consensus 89 Vv~vGs~vkgfk~Gd~VIp~~a~------------------------------------------------lGtW~t~~v 120 (354)
T KOG0025|consen 89 VVAVGSNVKGFKPGDWVIPLSAN------------------------------------------------LGTWRTEAV 120 (354)
T ss_pred EEEecCCcCccCCCCeEeecCCC------------------------------------------------CccceeeEe
Confidence 99999999999999999865431 359999999
Q ss_pred ecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 169 VDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 169 v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
.+++.++++++.++.+.||++..+.+|||+.|.+.-++.+||+|+..|| +++|++.+|+||+.|++ ++.+.|+.-...
T Consensus 121 ~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik-tinvVRdR~~ie 199 (354)
T KOG0025|consen 121 FSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK-TINVVRDRPNIE 199 (354)
T ss_pred ecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc-eEEEeecCccHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999998 777777775556
Q ss_pred chhhhhhc
Q 025173 248 EVQEMYSQ 255 (256)
Q Consensus 248 ~~~~~~~~ 255 (256)
|..+.++.
T Consensus 200 el~~~Lk~ 207 (354)
T KOG0025|consen 200 ELKKQLKS 207 (354)
T ss_pred HHHHHHHH
Confidence 66555543
No 36
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=1.4e-30 Score=235.65 Aligned_cols=191 Identities=26% Similarity=0.305 Sum_probs=167.0
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++.+++. +++++.+.|.+.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|++++++++|
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~G 78 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPG 78 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCC
Confidence 79999999886 888999999999999999999999999999998887644 4568999999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD 180 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~~ 180 (256)
|+|++.+..+|+.|..|..++.+.|.+.......+...+| +|+||+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g-------------------~~~~y~~v~~~~~~~~~lP~~ 139 (351)
T cd08285 79 DRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDG-------------------VFAEYFHVNDADANLAPLPDG 139 (351)
T ss_pred CEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCc-------------------ceeEEEEcchhhCceEECCCC
Confidence 9999887778999999999999999874321111112233 99999999864 89999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++++.++..+.|||++ .+.+.+++|++|||+|+|++|++++|+|+.+|+..
T Consensus 140 ~~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~ 193 (351)
T cd08285 140 LTDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGR 193 (351)
T ss_pred CCHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 9999999998899999998 47789999999999988999999999999999963
No 37
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=3.7e-30 Score=236.46 Aligned_cols=206 Identities=29% Similarity=0.369 Sum_probs=169.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|||+++.+++. +++++++.|.| +++||+||+.+++||++|++.+.|.++. .++|.++|||++|+|+++|+++..+++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 78 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKV 78 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCC
Confidence 78999998866 99999999998 4999999999999999999999998765 457899999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCC-CCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD-NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKIT 178 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p 178 (256)
||+|++.+...|+.|.+|+.+.+++|++..... ..+ .+| ++..++.|...-.....|+|+||+.++.+ .++++|
T Consensus 79 Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp 155 (386)
T cd08283 79 GDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYG-HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIP 155 (386)
T ss_pred CCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--ccc-cccccccccccccCCCCCeeEEEEEcccccCeEEECC
Confidence 999999888889999999999999998754321 000 000 00000000000000113599999999987 899999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++++|+.++..+.|||+++ +.+++.+|++|+|+|+|++|++++++|++.|+.
T Consensus 156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~ 210 (386)
T cd08283 156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAE 210 (386)
T ss_pred CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987 888999999999999899999999999999985
No 38
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=3.7e-30 Score=230.75 Aligned_cols=188 Identities=29% Similarity=0.454 Sum_probs=170.8
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++..+++++++++.|.|.++++||+||+.++++|++|++...|.++. ..+|.++|||++|+|+++|+++..+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPG 79 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCC
Confidence 789999999888999999999999999999999999999999999887654 4568899999999999999999889999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.....|+.|.+|..+.++.|+.... .|...+| +|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~ 137 (334)
T PRK13771 80 DRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVS 137 (334)
T ss_pred CEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCC
Confidence 999998878999999999999999988654 3333344 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++.+++.+.+||+++.+. .++++++|+|+|+ |.+|++++|+|+.+|++
T Consensus 138 ~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~ 189 (334)
T PRK13771 138 DEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAK 189 (334)
T ss_pred HHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCE
Confidence 999999999999999987555 8999999999998 99999999999999987
No 39
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=7.8e-30 Score=227.45 Aligned_cols=188 Identities=37% Similarity=0.618 Sum_probs=169.4
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++..++..+.++++|.|.+.++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G 79 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPG 79 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCC
Confidence 689999875555999999999999999999999999999999999887664 4568899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.....|+.|.+|+.+++++|.+... .|....| +|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~ 137 (332)
T cd08259 80 DRVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEEVDG-------------------GFAEYVKVPERSLVKLPDNVS 137 (332)
T ss_pred CEEEECCCCCCcCChhhhCCCcccCCCccc---cccccCC-------------------eeeeEEEechhheEECCCCCC
Confidence 999999888999999999999999987522 3333344 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++.+++++.|||+++.. +.+.++++++|+|+ |++|++++++++..|++
T Consensus 138 ~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~ 189 (332)
T cd08259 138 DESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGAR 189 (332)
T ss_pred HHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999998766 88999999999998 99999999999999988
No 40
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=4.8e-30 Score=231.00 Aligned_cols=190 Identities=32% Similarity=0.440 Sum_probs=168.9
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++.+++. +++.+.|.|.| .++||+||+.++++|++|++.+.|.++. ..+|.++|+|++|+|+++|+++.++++
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~ 78 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKP 78 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCC
Confidence 68999998877 88999999999 8999999999999999999999888765 566899999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~ 179 (256)
||+|++.+...|+.|.+|..+.+++|.+.......+...+| +|++|++++.+ .++++|+
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~ 139 (347)
T cd05278 79 GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------------------GQAEYVRVPYADMNLAKIPD 139 (347)
T ss_pred CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCC-------------------eeeEEEEecchhCeEEECCC
Confidence 99999988889999999999999999875432111222233 99999999987 8999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++++.+++++.|||+++ +..++++|++|||.|+|++|++++|+|+.+|..
T Consensus 140 ~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~ 193 (347)
T cd05278 140 GLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAA 193 (347)
T ss_pred CCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999987 778899999999988899999999999999974
No 41
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=218.92 Aligned_cols=178 Identities=27% Similarity=0.300 Sum_probs=161.6
Q ss_pred ccccceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCC
Q 025173 19 KIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96 (256)
Q Consensus 19 ~~~t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v 96 (256)
.|+..|.+++++.|.. +++++.|.|+|.++|.+||..|+|+|+.|++.++|.+.. ...|++||.|++|+|+++|+.|
T Consensus 5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~-~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDP-APLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCC-CCCCcCCCcccceEEEEecCCc
Confidence 4778999999998877 889999999999999999999999999999999999964 6899999999999999999999
Q ss_pred cccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173 97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (256)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~ 176 (256)
+++++||+|.-... +|.|+|+..+|...+++
T Consensus 84 tdrkvGDrVayl~~-------------------------------------------------~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLNP-------------------------------------------------FGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEecc-------------------------------------------------chhhheeccccceeecc
Confidence 99999999975432 23999999999999999
Q ss_pred cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173 177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS 254 (256)
Q Consensus 177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~ 254 (256)
+|+.+++++||++...+.|||.-+.+..++++|++|||+.| |++|++++|++|+.|+. +|......|+++
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~--------tI~~asTaeK~~ 185 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH--------TIATASTAEKHE 185 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcE--------EEEEeccHHHHH
Confidence 99999999999999999999998888889999999999976 99999999999999998 566666666554
No 42
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=1.5e-29 Score=228.10 Aligned_cols=189 Identities=33% Similarity=0.542 Sum_probs=170.6
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++.+++.++++++.+.|.+.++||+||+.++++|++|+..+.|.++. ..+|.++|+|++|+|+++|+++..|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~G 79 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVG 79 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCC
Confidence 799999988877999999999999999999999999999999999888664 4568899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD 180 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~~ 180 (256)
|+|++.+...|+.|.+|..|+.++|.+... .+...+| +|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~ 137 (345)
T cd08260 80 DRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDD 137 (345)
T ss_pred CEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCC
Confidence 999986667899999999999999998653 2332244 89999999874 89999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++++.++..+.|||+++.+.+++.++++|+|+|+|++|++++|+|+..|..
T Consensus 138 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~ 191 (345)
T cd08260 138 VDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR 191 (345)
T ss_pred CCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999987888999999999999999999999999999987
No 43
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=9.9e-30 Score=228.35 Aligned_cols=187 Identities=28% Similarity=0.455 Sum_probs=166.4
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++++++....+++.|.|.+.++||+||+.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++..|++|
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~G 78 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVG 78 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCC
Confidence 799999998875448999999999999999999999999999999887643 346789999999999999999999999
Q ss_pred CEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
|+|++.+ ...|+.|..|..+..++|.+... .|...+| +|+||+.++.+.++++|+++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~ 136 (338)
T PRK09422 79 DRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGL 136 (338)
T ss_pred CEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCC
Confidence 9998754 45799999999999999987653 3444455 99999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLK-FTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~-G~~ 234 (256)
++++++.++..+.|||+++ +.+++++|++|||+|+|++|++++++|+.. |++
T Consensus 137 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~ 189 (338)
T PRK09422 137 DPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK 189 (338)
T ss_pred CHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe
Confidence 9999999999999999986 788999999999999999999999999984 887
No 44
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=1.3e-29 Score=229.29 Aligned_cols=188 Identities=29% Similarity=0.458 Sum_probs=164.4
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--------CCCCCCeeeeeeeeEEEEEccC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--------PMAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--------~~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
||++++.+++. +++++++.|++.++||+||+.++++|++|++.+.|... ....+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 78999998877 99999999999999999999999999999999887631 1114677899999999999999
Q ss_pred CCc--ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC--CCCCCcccccCCCceeeccccccceeeeEEec
Q 025173 95 GVE--EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD 170 (256)
Q Consensus 95 ~v~--~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~--~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~ 170 (256)
.++ +|++||+|+..+...|+.|+.|+.+..++|..... .|. ..+| +|++|+.++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g-------------------~~~~~~~~~ 137 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG-------------------GMAEYMRFP 137 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC-------------------cceeeEEcc
Confidence 998 89999999999999999999999999999975321 222 1234 999999999
Q ss_pred CC-cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 171 VT-HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 171 ~~-~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++ .++++|+++++++++.+ .++.|+|+++ +.+++++|++|+|.|+|++|++++|+|+++|+..
T Consensus 138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~ 201 (350)
T cd08256 138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKK 201 (350)
T ss_pred cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 87 57899999999999988 7889999986 8889999999999878999999999999999874
No 45
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=3e-29 Score=228.31 Aligned_cols=209 Identities=43% Similarity=0.702 Sum_probs=172.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++..++.++++++++.|+++++||+||+.++++|+.|.+.+.|.++. .+|.++|+|++|+|+++|+++..+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPG 78 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCC
Confidence 799999998777999999999999999999999999999999999887763 567899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|+.|.+|.++..+.|.+..... .|...+|..++. ..|-+.......|+|++|+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 156 (363)
T cd08279 79 DHVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP 156 (363)
T ss_pred CEEEECCCCCCCCChhhcCCCcccCccccccc-ccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCCC
Confidence 99999999999999999999999997642100 000000000000 0000000011235999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++.+++++.|||.++.+.+++.++++|+|+|+|++|++++++|+.+|+.+
T Consensus 157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~ 209 (363)
T cd08279 157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASR 209 (363)
T ss_pred hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 99999999999999999888899999999999988999999999999999863
No 46
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.97 E-value=3.2e-29 Score=223.92 Aligned_cols=187 Identities=27% Similarity=0.378 Sum_probs=164.8
Q ss_pred ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++..++ ..+++++.+.|+++++||+||+.++++|++|++.+.+.. . ..+|.++|||++|+|+++|+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~-~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-V-KPMPHIPGAEFAGVVEEVGDHVKGVKK 78 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-C-CCCCeecccceeEEEEEECCCCCCCCC
Confidence 6899987766 348888888888999999999999999999999887532 1 245789999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.+...|+.|.+|+.|++++|.+..+ .+...+| +|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~ 136 (325)
T cd08264 79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSI 136 (325)
T ss_pred CCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCC
Confidence 9999998888999999999999999987544 3333344 89999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++.+++++.+||+++. .+++++|++|+|+|+ |++|++++++|+++|++
T Consensus 137 ~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~ 189 (325)
T cd08264 137 SDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE 189 (325)
T ss_pred CHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe
Confidence 99999999999999999875 489999999999998 99999999999999987
No 47
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=2.4e-29 Score=231.27 Aligned_cols=195 Identities=19% Similarity=0.174 Sum_probs=166.9
Q ss_pred cccccceeEEEec--CCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---------CCCCCeeeee
Q 025173 18 GKIIRCRAAISRI--PGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFPRILGH 83 (256)
Q Consensus 18 ~~~~t~ka~~~~~--~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~~p~~~G~ 83 (256)
..|.+||++++.. .+.+ ++++++|.|.++++||+||+.+++||++|++.+.+.... ....+.++||
T Consensus 8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~ 87 (393)
T cd08246 8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS 87 (393)
T ss_pred cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence 4688999999863 3322 788999999999999999999999999999988775110 0112358999
Q ss_pred eeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccc
Q 025173 84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSS 162 (256)
Q Consensus 84 e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~ 162 (256)
|++|+|+++|++++.+++||+|++.+...|+.|..|..+..++|..... .|.. .+| +
T Consensus 88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g-------------------~ 145 (393)
T cd08246 88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG-------------------S 145 (393)
T ss_pred ceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC-------------------c
Confidence 9999999999999999999999999888899999999999999986543 3321 233 9
Q ss_pred eeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHh--cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKV--AEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 163 ~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
|++|+.++...++++|+++++++++.+.+++.|||+++... +++++|++|+|+|+ |++|++++++|+.+|+.
T Consensus 146 ~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~ 220 (393)
T cd08246 146 FAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN 220 (393)
T ss_pred ceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999987654 78899999999998 99999999999999998
No 48
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=4.8e-29 Score=223.10 Aligned_cols=188 Identities=33% Similarity=0.552 Sum_probs=168.5
Q ss_pred ceeEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 23 CRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 23 ~ka~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
||++++.+++. .+++++.+.|.++++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR 79 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence 78999998883 4888888888899999999999999999999999887764 456889999999999999999999
Q ss_pred cCCCCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 99 VREGDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 99 ~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
+++||+|++.+ ...|+.|.+|+.+.+++|+...+ .|...+| +|++|+.++.+.++++
T Consensus 80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~l 137 (329)
T cd08298 80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPI 137 (329)
T ss_pred CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEEC
Confidence 99999998754 35689999999999999987765 3443445 8999999999999999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
|+++++.+++.+.+++.|||+++ +.++++++++|+|+|+|++|++++++|+..|++
T Consensus 138 p~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~ 193 (329)
T cd08298 138 PEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAE 193 (329)
T ss_pred CCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe
Confidence 99999999999999999999987 889999999999999999999999999999987
No 49
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=2.4e-29 Score=227.34 Aligned_cols=192 Identities=31% Similarity=0.477 Sum_probs=169.5
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-----------CCCCCeeeeeeeeEEEEE
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-----------MAVFPRILGHEAVGVVES 91 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-----------~~~~p~~~G~e~vG~Vv~ 91 (256)
||++++..++.+++++++|.|+++++||+||+.++++|++|++.+.|.++. ...+|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 799999988887999999999999999999999999999999999886541 124567899999999999
Q ss_pred ccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 92 VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 92 vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
+|++++++++||+|++.+...|+.|.+|.++.+++|.+... .|....| +|++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQDG-------------------GYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeeccC-------------------cceeeEEecH
Confidence 99999999999999999888999999999999999977543 2222333 8999999999
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+.++++|+++++++++.+.+.+.|||+++.+...+.++++|+|+|+|++|++++|+|+..|++++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v 203 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANI 203 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999988766667789999999889999999999999999643
No 50
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=3.5e-29 Score=231.81 Aligned_cols=178 Identities=21% Similarity=0.261 Sum_probs=144.9
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhH-cCCCCC-----CCCCCeeeeeeeeEEEEEccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-----MAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~-----~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
|+||++++.+++. ++++++|.|+|+++||+|||.++|||++|++.+ .|.... ...+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 5699999999987 999999999999999999999999999999976 454211 024788999999999999999
Q ss_pred CCc-ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC-
Q 025173 95 GVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT- 172 (256)
Q Consensus 95 ~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~- 172 (256)
+|+ +|++||+|+..+...|+.|..|. + .|...+| +|+||++++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~~~G-------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYTYPG-------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------ccccCCC-------------------cceEEEEecHHh
Confidence 998 69999999998887888887662 1 2222345 99999999986
Q ss_pred ---cEEEcCCCCChhhhhhc-h--hhHHHHHHHH--------HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173 173 ---HVVKITPDIPLDIACLL-S--CGVSTGLGAA--------WKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFT 233 (256)
Q Consensus 173 ---~~~~~p~~l~~~~aa~l-~--~~~~ta~~~l--------~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~ 233 (256)
.++++|+++++++|+.+ + +. .+++.++ .+++++++|++|+|+|+ |++|++++|+|+.+|+
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~ 201 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPI 201 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhccc
Confidence 68999999999998865 2 22 2234332 35678999999999985 9999999999999864
No 51
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.97 E-value=9.4e-29 Score=226.19 Aligned_cols=197 Identities=28% Similarity=0.415 Sum_probs=164.2
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++.+++. ++++++|.|++ +++||+||+.++++|++|++.+.|.++. .+|.++|||++|+|+++|+.+..+++
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~ 77 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKV 77 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCC
Confidence 68999988875 99999999996 7999999999999999999999887763 56899999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~ 179 (256)
||+|++.+...|+.|.+|..++.+.|.+.... .+...+|.... ....|+|+||+.++.+ .++++|+
T Consensus 78 Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~ 145 (375)
T cd08282 78 GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPD 145 (375)
T ss_pred CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccccccc----------CCCCCeeeeEEEeecccCcEEECCC
Confidence 99999988889999999999999999763211 00000000000 0001399999999975 8999999
Q ss_pred CCChh---hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 180 DIPLD---IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 180 ~l~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++ +++.+.+.+.|||+++ +.+++.+|++|+|.|+|++|++++|+|++.|+.+
T Consensus 146 ~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~ 203 (375)
T cd08282 146 RDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASR 203 (375)
T ss_pred CCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 99998 5677888999999987 8889999999999988999999999999999853
No 52
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=1.1e-28 Score=222.59 Aligned_cols=189 Identities=30% Similarity=0.446 Sum_probs=167.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++.+++. +++++.+.|+| .++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++..+++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~ 78 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNFKV 78 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccccCC
Confidence 78999998887 99999999986 8999999999999999999999998764 345889999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~ 179 (256)
||+|++.+...|+.|.+|..+.++.|...... .|...+| +|++|+.++.+ .++++|+
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~~~lp~ 137 (345)
T cd08286 79 GDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG-------------------TQAEYVRIPHADNSLYKLPE 137 (345)
T ss_pred CCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC-------------------eeeeEEEcccccCceEECCC
Confidence 99999988888999999999999999765331 1222233 99999999987 8999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++.++++.+.+.+.|||+++.+.+++.+|++|||.|+|++|.+++|+|+.+|..
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~ 192 (345)
T cd08286 138 GVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPS 192 (345)
T ss_pred CCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999877888999999999999999999999999999954
No 53
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.97 E-value=1.1e-28 Score=219.89 Aligned_cols=190 Identities=26% Similarity=0.409 Sum_probs=167.9
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++...+.+ +.+++.+.|.+.+++|+||+.++++|++|++.+.|.++....+|.++|||++|+|+++|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 688998844432 777788888889999999999999999999999887653345688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+...|+.|.+|..+.+++|++... .|....| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999987533 3333344 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++++.+||+++.+..++.++++|+|+|+ +.+|++++++++..|++
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~ 193 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT 193 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE
Confidence 9999999999999999999888899999999999998 79999999999999988
No 54
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.96 E-value=8.4e-29 Score=228.29 Aligned_cols=194 Identities=21% Similarity=0.184 Sum_probs=165.9
Q ss_pred ccccceeEEEec--CCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC---------CCCCC-eeeee
Q 025173 19 KIIRCRAAISRI--PGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFP-RILGH 83 (256)
Q Consensus 19 ~~~t~ka~~~~~--~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~---------~~~~p-~~~G~ 83 (256)
.|.+|||+++.. ++++ ++++++|.|.|+++||+||+.++++|++|.+...+.... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 467899999965 5544 888999999999999999999999999999877654210 01233 37999
Q ss_pred eeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccc
Q 025173 84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSS 162 (256)
Q Consensus 84 e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~ 162 (256)
|++|+|+++|+.+..+++||+|++.+...|+.|++|+.+++++|+.... .|. ..+ |+
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-------------------g~ 141 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF-------------------GS 141 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC-------------------cc
Confidence 9999999999999999999999999999999999999999999976432 221 122 39
Q ss_pred eeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHH--hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWK--VAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 163 ~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
|+||+.++.+.++++|+++++++++.+.+.+.|||+++.. .+++.+|++|+|+|+ |++|++++|+|+.+|++
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~ 216 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGN 216 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999998754 477899999999998 99999999999999998
No 55
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.96 E-value=1e-28 Score=222.43 Aligned_cols=194 Identities=28% Similarity=0.405 Sum_probs=165.3
Q ss_pred eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCC
Q 025173 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103 (256)
Q Consensus 24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd 103 (256)
|+++++..+..|++++++.|+|+++||+||+.++++|++|++.+.|.+.. ..+|.++|||++|+|+++|+++++|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGD 79 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCC
Confidence 57888888777999999999999999999999999999999999887643 45688999999999999999999999999
Q ss_pred EEe-eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 104 LVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 104 ~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
+|+ ......|+.|.+|..+..++|+...... .|....| ....|+|+||+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~ 144 (337)
T cd05283 80 RVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLD 144 (337)
T ss_pred EEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCC
Confidence 997 4445689999999999999998765421 0110000 01123899999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++.+.+.+.|||+++ +...+++|++|+|.|+|++|++++++|+.+|++
T Consensus 145 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~ 195 (337)
T cd05283 145 SAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE 195 (337)
T ss_pred HHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe
Confidence 999999999999999986 445689999999998899999999999999986
No 56
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.96 E-value=8.2e-29 Score=221.07 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=138.3
Q ss_pred cceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecC-hhhHHhHcCCCCCC--CCCCeeeeeeeeEEEEEccCCCcc
Q 025173 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLC-HSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 22 t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~-~~D~~~~~g~~~~~--~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
+||++++.+++. +++++.|.|+|+++||||||.+++|| ++|++.+.|.++.. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478999998876 99999999999999999999999996 79999998876532 3579999999999999999998 6
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
|++||+|+.. |..|..|.. + .+| +|+||++++++.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~G-------------------~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G--LFG-------------------GASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c--cCC-------------------cccceEEcCHHHceeCC
Confidence 9999999863 222322210 0 123 99999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++++++. +.+. ...|||+++.+ . ..++++|+|+|+|++|++++|+||++|++.
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~ 171 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSP 171 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCce
Confidence 9999864 4444 57899998744 3 346899999999999999999999999984
No 57
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.96 E-value=1.5e-28 Score=219.17 Aligned_cols=180 Identities=24% Similarity=0.435 Sum_probs=158.0
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++.+++. +++++++.|+++++||+||+.++++|++|.+.+.|.++ +|.++|||++|+|+++|++ +++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G 72 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVG 72 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCC
Confidence 68999988765 99999999999999999999999999999999988753 5788999999999999987 6799
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
|+|...+..+|+.|.+|..+..+.|.+... .+. ..+| +|++|+.++.+.++++|+++
T Consensus 73 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~ 130 (319)
T cd08242 73 KRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLV 130 (319)
T ss_pred CeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCC
Confidence 999998888899999999999999987553 232 1244 89999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.++++.+ ....++|. +.+..++++|++|+|+|+|.+|++++|+|+.+|++
T Consensus 131 ~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~ 181 (319)
T cd08242 131 PDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD 181 (319)
T ss_pred CHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 99888864 35556666 45788999999999999899999999999999998
No 58
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=1.7e-28 Score=219.57 Aligned_cols=190 Identities=32% Similarity=0.501 Sum_probs=171.0
Q ss_pred ceeEEEecCCCC-cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~-l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++..++++ +.+.+.+.|.++++||+||+.++++|+.|.+.+.|.++....+|.++|+|++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 799999999987 6778888888999999999999999999999999887643456889999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.+..+|+.|.+|..++.+.|..... .|...+| +|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence 9999998888999999999999999965433 2333344 99999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++.++..+.|||+++.+...++++++|||.|+|.+|++++++|+..|++
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~ 191 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA 191 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE
Confidence 99999999999999999988888899999999998899999999999999987
No 59
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.96 E-value=2.4e-28 Score=222.55 Aligned_cols=210 Identities=33% Similarity=0.547 Sum_probs=170.8
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc---c
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE---V 99 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~---~ 99 (256)
||++++.+++.++++++.|.|.++++||+||+.++++|++|++.+.+.++. .+|.++|||++|+|+++|+++.+ |
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~ 78 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGL 78 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcC
Confidence 789999988766899999999999999999999999999999999887754 67889999999999999999988 9
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-CCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
++||+|++.+..+|+.|.+|..+++++|++.......+.. .+|.-.+..-.+...+ ....|+|++|+.++.+.++++|
T Consensus 79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P 157 (367)
T cd08263 79 SVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLP 157 (367)
T ss_pred CCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECC
Confidence 9999999988889999999999999999976421000100 0000000000000000 0012499999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++++++.+++++.|||+++.+...+.++++|+|+|+|++|++++++|+..|+.+
T Consensus 158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~ 214 (367)
T cd08263 158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASP 214 (367)
T ss_pred CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999888888899999999988999999999999999873
No 60
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.96 E-value=2.3e-28 Score=220.00 Aligned_cols=190 Identities=28% Similarity=0.422 Sum_probs=164.4
Q ss_pred ceeEEEecCCCCcEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++..++. +++++++.|+|. ++||+||+.++++|+.|++.+.|.++. .+|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKV 77 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCC
Confidence 68999988765 999999999985 999999999999999999999887653 45788999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~ 179 (256)
||+|++.+...|+.|.+|..++++.|++... .|.... ....|+|++|+.++.+ .++++|+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------~~~~g~~~~~~~v~~~~~~~~~~p~ 139 (344)
T cd08284 78 GDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYAGS---------------PNLDGAQAEYVRVPFADGTLLKLPD 139 (344)
T ss_pred CCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccccc---------------CCCCCceeEEEEcccccCceEECCC
Confidence 9999998888899999999999999977533 211000 0012499999999864 9999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++++.+++++.|||+++. .+++.+|++|+|+|+|++|++++|+|+.+|+.
T Consensus 140 ~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~ 193 (344)
T cd08284 140 GLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAA 193 (344)
T ss_pred CCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCc
Confidence 9999999999999999999874 58899999999998899999999999999974
No 61
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.96 E-value=2.9e-28 Score=219.08 Aligned_cols=185 Identities=34% Similarity=0.590 Sum_probs=163.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||+++++.++. +++++++.|++.++||+|||.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~G 78 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-ASYPRILGHELSGEVVEVGEGVAGLKVG 78 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc-CCCCcccccccEEEEEEeCCCCCCCCCC
Confidence 68999998876 899999999999999999999999999999999887665 3557899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|+.|..|+.++++.|.+.+. .+....| +|++|+.++++ ++++|++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~-~~~~p~~~~ 135 (337)
T cd08261 79 DRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG-------------------GFAEYIVVPAD-ALLVPEGLS 135 (337)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC-------------------cceeEEEechh-eEECCCCCC
Confidence 999998888999999999999999954322 2222233 89999999999 999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++.+ ..+.++++++ +..++.+|++|||+|+|.+|.+++|+|+.+|.+
T Consensus 136 ~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~ 185 (337)
T cd08261 136 LDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR 185 (337)
T ss_pred HHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 9999877 4678888876 788999999999998899999999999999988
No 62
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=5e-28 Score=218.07 Aligned_cols=187 Identities=32% Similarity=0.423 Sum_probs=160.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++.+++. +++++.|.|+| +++||+||+.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++..+++
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKP 77 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCC
Confidence 78999998876 99999999996 8999999999999999999999887653 45789999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC--cEEEcCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--~~~~~p~ 179 (256)
||+|++.....|+.|..|..+..++|.+... .+...+| +|++|+.++.+ .++++|+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~ 135 (345)
T cd08287 78 GDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPG 135 (345)
T ss_pred CCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCC
Confidence 9999886666799999999999999987543 3333444 99999999864 9999999
Q ss_pred CCChhhhh-----hchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 180 DIPLDIAC-----LLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 180 ~l~~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++.+. .+...+.|||+++ ..+++++|++|+|.|+|++|++++|+|+++|+..
T Consensus 136 ~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~ 195 (345)
T cd08287 136 SPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAER 195 (345)
T ss_pred CCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 99872221 2235788999986 5788999999999988999999999999999874
No 63
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.96 E-value=6.2e-28 Score=216.00 Aligned_cols=187 Identities=34% Similarity=0.525 Sum_probs=165.8
Q ss_pred eeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCC
Q 025173 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103 (256)
Q Consensus 24 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd 103 (256)
|++++.++|..+++++.|.|.+.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++.+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd 79 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGD 79 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCC
Confidence 68899988656999999999999999999999999999999999887643 45688999999999999999999999999
Q ss_pred EEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 104 LVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 104 ~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
+|+..+. ..|+.|.+|+++..++|++..+ .+...+| +|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~ 137 (330)
T cd08245 80 RVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLP 137 (330)
T ss_pred EEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCC
Confidence 9987543 5699999999999999998654 3332344 899999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++.+.+.+.|||+++.. .+++++++|+|+|+|.+|++++++|+..|..
T Consensus 138 ~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~ 188 (330)
T cd08245 138 LAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGFE 188 (330)
T ss_pred HHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 99999999999999998754 7899999999999888999999999999987
No 64
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.96 E-value=6.8e-28 Score=216.86 Aligned_cols=186 Identities=31% Similarity=0.509 Sum_probs=165.6
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
||++++++++. +.+++.+.|++.+++|+||+.++++|+.|+..+.+.++. ..+|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~-~~~~~~~g~~~~G~V~~~G~~v~~~~~G 78 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTD-LKPPRILGHEIAGEIVEVGDGVTGFKVG 78 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCcc-CCCCcccccceEEEEEeeCCCCCCCCCC
Confidence 68999998875 899999999999999999999999999999999887642 3457899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc-----EEEc
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-----VVKI 177 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~-----~~~~ 177 (256)
|+|++.+...|+.|..|..+++++|..... .|...+| +|++|+.++.+. ++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~l 136 (343)
T cd08235 79 DRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKL 136 (343)
T ss_pred CEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEEC
Confidence 999999888899999999999999988654 3433445 999999999988 9999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
|+++++++++.+ ..+.+||+++. ..++++|++|+|+|+|.+|++++|+|+..|++
T Consensus 137 P~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~ 191 (343)
T cd08235 137 PDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGAR 191 (343)
T ss_pred CCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 999999999876 68899999874 45899999999998899999999999999988
No 65
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.96 E-value=5.4e-28 Score=217.79 Aligned_cols=188 Identities=28% Similarity=0.447 Sum_probs=159.8
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC-C-CCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-P-PMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~-~-~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+++..+++++.|.|.|+++||+||+.++++|++|++++.+.. . ....+|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999888779999999999999999999999999999999876642 1 1134678899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+...|..|.+|+.+.+++|++.++ .+...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence 99999998888999999999999999987543 3333344 9999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++++++.+ ..+.++++++.. ...+|++|+|.|+|++|++++|+|++.|+++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~ 190 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARH 190 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence 999888754 455666665432 3468999999988999999999999999863
No 66
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=6.5e-28 Score=221.39 Aligned_cols=190 Identities=26% Similarity=0.478 Sum_probs=160.1
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC------CCCCCCCeeeeeeeeEEEEEccC
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
..+.+.++..+ . ++++++|.|+++++||+||+.++++|++|++.+.+.. +....+|.++|||++|+|+++|+
T Consensus 27 ~~~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 104 (384)
T cd08265 27 TNLGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK 104 (384)
T ss_pred ccceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence 33555666643 3 9999999999999999999999999999999887421 21235688999999999999999
Q ss_pred CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (256)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~ 174 (256)
++.+|++||+|++.+..+|+.|..|..++.++|..... .|...+| +|++|+.++.+.+
T Consensus 105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~ 162 (384)
T cd08265 105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA 162 (384)
T ss_pred CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence 99999999999999989999999999999999987653 4443345 9999999999999
Q ss_pred EEcCCCC-------ChhhhhhchhhHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 175 VKITPDI-------PLDIACLLSCGVSTGLGAAWKV-AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 175 ~~~p~~l-------~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++|+++ +.+ ++.+..++.+||+++... +++++|++|+|+|+|++|++++|+|+.+|+.+
T Consensus 163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~ 230 (384)
T cd08265 163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASK 230 (384)
T ss_pred EECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 9999864 444 555666889999988666 78999999999988999999999999999854
No 67
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.96 E-value=8.8e-28 Score=218.66 Aligned_cols=192 Identities=22% Similarity=0.380 Sum_probs=158.4
Q ss_pred ccceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 21 ~t~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
..++++++..++. +++++.+.|+|+++||+||+.++++|++|++.+.+.... ...+|.++|||++|+|+++|+++.+
T Consensus 16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 94 (364)
T PLN02702 16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH 94 (364)
T ss_pred cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence 3344455555655 888899999899999999999999999999998764211 1235788999999999999999999
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
|++||+|++.+...|+.|..|+.|.+++|++... .+. ..+| +|++|+.++.+.++++
T Consensus 95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g-------------------~~~~y~~v~~~~~~~~ 152 (364)
T PLN02702 95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG-------------------SLANQVVHPADLCFKL 152 (364)
T ss_pred CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC-------------------cccceEEcchHHeEEC
Confidence 9999999998888999999999999999986432 111 1234 9999999999999999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
|++++++++++. ..+.++|+++ +..++.+|++|+|+|+|++|++++|+|+.+|+..++
T Consensus 153 P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~ 210 (364)
T PLN02702 153 PENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIV 210 (364)
T ss_pred CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 999999988753 2445578876 788899999999999999999999999999987433
No 68
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.96 E-value=2.2e-27 Score=213.58 Aligned_cols=189 Identities=31% Similarity=0.484 Sum_probs=166.9
Q ss_pred ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|||+++++++ ..+++++++.|.|.++||+||+.++++|++|.+.+.+.++.....|.++|||++|+|+++|+++..+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7999998877 239999999999999999999999999999999998876543445778999999999999999999999
Q ss_pred CCEEeeec-ccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 102 GDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 102 Gd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
||+|++.+ ...|+.|.+|..+++.+|.+... .|....| +|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence 99999875 45699999999999999988654 3443444 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.++..+.|||+++.. .+++++++|||+|+ +.+|++++++|+++|++
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~ 192 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR 192 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCe
Confidence 9999999999999999998755 58999999999998 67999999999999987
No 69
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=1.1e-27 Score=215.66 Aligned_cols=185 Identities=31% Similarity=0.523 Sum_probs=165.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++++++. +++++.+.|++.++||+||+.++++|+.|++.+.+.+.. .+|.++|+|++|+|+++|+++..|++|
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~G 77 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVG 77 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCC
Confidence 78999998876 899999999999999999999999999999998887633 457889999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|..|.+|..+.++.|++... .|...+| +|++|+.++.+.++++|++++
T Consensus 78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~ 135 (343)
T cd08236 78 DRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVD 135 (343)
T ss_pred CEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCC
Confidence 999999888899999999999999977532 3333444 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++.+ ..+.|||+++. .+.++++++|+|+|+|.+|++++|+|+.+|+.
T Consensus 136 ~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~ 185 (343)
T cd08236 136 YEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAK 185 (343)
T ss_pred HHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 9999887 57789999874 78899999999998899999999999999987
No 70
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=1.6e-27 Score=213.46 Aligned_cols=186 Identities=30% Similarity=0.517 Sum_probs=167.1
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
|||+++.+++. +++++.+.|++.++||+||+.++++|+.|++...|.++. .+|.++|+|++|+|+++|++++++++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~G 77 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVG 77 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCC
Confidence 78999998886 999999999999999999999999999999999988764 478899999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+...|+.|.+|..+++++|..... .|...+| +|++|+.++.+.++++|++++
T Consensus 78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 135 (334)
T cd08234 78 DRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLS 135 (334)
T ss_pred CEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCC
Confidence 999998888899999999999999987643 3333445 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+.+++.+ ..+.++++++ +.+++.+|++|+|+|+|.+|.+++++|+..|+++
T Consensus 136 ~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~ 186 (334)
T cd08234 136 FEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASR 186 (334)
T ss_pred HHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 9998876 6788999987 8889999999999988999999999999999873
No 71
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.96 E-value=3.1e-27 Score=210.47 Aligned_cols=188 Identities=28% Similarity=0.505 Sum_probs=164.6
Q ss_pred ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||++++++++ ..+++++++.|++.++||+||+.++++|++|.+.+.+.+.. ..+|.++|+|++|+|+++|++++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 79 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKV 79 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCC
Confidence 5889988655 23999999999999999999999999999999998887633 345789999999999999999999999
Q ss_pred CCEEeeecc-cCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
||+|++... ..|+.|.+|..+..+.|+..+. .|...+| +|++|+.++.+.++++|++
T Consensus 80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 137 (306)
T cd08258 80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-------------------GFAEYVLVPEESLHELPEN 137 (306)
T ss_pred CCEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-------------------ceEEEEEcchHHeEECcCC
Confidence 999998774 6799999999999999987532 2333334 9999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++++ +...+.+||+++...++++++++|+|.|+|.+|.+++|+|+.+|++
T Consensus 138 ~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~ 190 (306)
T cd08258 138 LSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT 190 (306)
T ss_pred CCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 9999887 6668889999988889999999999988899999999999999988
No 72
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=2.3e-27 Score=213.46 Aligned_cols=177 Identities=25% Similarity=0.408 Sum_probs=152.3
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC----------CCCCCCeeeeeeeeEEEEEc
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP----------PMAVFPRILGHEAVGVVESV 92 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~----------~~~~~p~~~G~e~vG~Vv~v 92 (256)
||++++..+ .+++++++.|+++++||+||+.++++|+.|++.+.|... ....+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999766 499999999999999999999999999999999987321 01235789999999999999
Q ss_pred cCCCcc-cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 93 GGGVEE-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 93 G~~v~~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
|+++++ |++||+|++.+...|+.|.+|..+. ....+| +|+||+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~-------------~~~~~g-------------------~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-------------SPEAPG-------------------GYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCC-------------CcCCCC-------------------ceeeeEEech
Confidence 999987 9999999999889999999994221 111233 8999999999
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+.++++|+++++++++ ++..+++||++ ...+++++|++|||+|+|++|.+++|+|+.+|+..
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~ 188 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGP 188 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 9999999999999887 56688899998 58899999999999988999999999999999874
No 73
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.95 E-value=2.2e-27 Score=211.33 Aligned_cols=162 Identities=28% Similarity=0.321 Sum_probs=145.3
Q ss_pred ceeEEEecCCCC---cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173 23 CRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (256)
Q Consensus 23 ~ka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 99 (256)
||++++.+++.+ ++++++|.|.+.++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 789999887754 77899999999999999999999999999999988775334568899999999999999999999
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
++||+|++... . |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECCC
Confidence 99999986431 1 2899999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++++.+++...|||+++ +.+++++|++|||+|+ |.+|++++|+|+++|+.
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~ 166 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN 166 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe
Confidence 999999999988899999976 5688999999999988 99999999999999998
No 74
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.95 E-value=3.8e-27 Score=212.56 Aligned_cols=186 Identities=30% Similarity=0.499 Sum_probs=159.2
Q ss_pred eEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCC-CCC-CCCCCeeeeeeeeEEEEEccCCCcccCCC
Q 025173 25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP-MAVFPRILGHEAVGVVESVGGGVEEVREG 102 (256)
Q Consensus 25 a~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~-~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vG 102 (256)
+++|++++. +++++.+.|++.++||+||+.++++|+.|++.+.+. ... ...+|.++|+|++|+|+++|+++.+|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 467788855 999999999999999999999999999999876432 111 12357789999999999999999999999
Q ss_pred CEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCC
Q 025173 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (256)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~ 182 (256)
|+|++.+..+|+.|.+|+.|.+++|++.... .....+| +|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVDG-------------------TLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence 9999988889999999999999999875431 0111234 999999999999999999999
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++++.+ ..+.+|++++ +.+++++|++|+|.|+|++|++++|+|+.+|++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~ 188 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGAT 188 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 9999877 5788999975 889999999999998899999999999999987
No 75
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.95 E-value=4.2e-27 Score=211.58 Aligned_cols=183 Identities=28% Similarity=0.491 Sum_probs=155.8
Q ss_pred EEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHc-CCCCC-CCCCCeeeeeeeeEEEEEccCCCcccCCCCE
Q 025173 27 ISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVEEVREGDL 104 (256)
Q Consensus 27 ~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~ 104 (256)
++++.+. +++++.+.|.++++||+||+.++++|++|++.+. +.+.. ...+|.++|+|++|+|+++|+++.+|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4666766 9999999999999999999999999999998774 33211 1245789999999999999999999999999
Q ss_pred EeeecccCCCCCcccCCCCCCCCCcCccCCCCCC-----CCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 105 VLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-----PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 105 V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-----~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
|++.+..+|+.|.+|..|+.++|..... .+. ..+| +|++|+.++.+.++++|+
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g-------------------~~~~~v~v~~~~~~~iP~ 138 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRFPHVQG-------------------GFREYLVVDASQCVPLPD 138 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeeccccCCCCC-------------------ceeeEEEechHHeEECcC
Confidence 9999888999999999999999987533 111 0133 999999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++++++|+. ..++.+||+++.+...+ ++++|||.|+|.+|++++|+|+.+|++
T Consensus 139 ~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~ 191 (339)
T cd08232 139 GLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAA 191 (339)
T ss_pred CCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 999999876 56888999987665556 899999998899999999999999985
No 76
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.95 E-value=7.4e-27 Score=209.14 Aligned_cols=162 Identities=25% Similarity=0.339 Sum_probs=138.3
Q ss_pred ceeEEEecCCCC-----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173 23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 23 ~ka~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
||++++.+++.+ ++++++|.|.|+++||+||+.++++|++|++.+.|.++....+|.++|||++|+|+++|+++.
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 789999988853 777888999999999999999999999999999887654345789999999999999999998
Q ss_pred c-cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEE
Q 025173 98 E-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (256)
Q Consensus 98 ~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~ 176 (256)
+ |++||+|+.... .+| +|+||+.++++.+++
T Consensus 81 ~~~~vGd~V~~~~~-----------------------------~~g-------------------~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG-----------------------------SYG-------------------TYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC-----------------------------CCC-------------------cchheeeecHHHeEE
Confidence 6 999999985321 023 899999999999999
Q ss_pred cCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEE-C-CCHHHHHHHHHHHHcCCC
Q 025173 177 ITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIF-G-LGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 177 ~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G-aG~vG~~aiqla~~~G~~ 234 (256)
+|+++++++++.+++...|||. +.+.... ++++++|+ | +|++|++++|+|+.+|++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~ 170 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGIK 170 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCE
Confidence 9999999999988888899976 4555665 56666665 4 499999999999999997
No 77
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=2.1e-26 Score=207.53 Aligned_cols=181 Identities=28% Similarity=0.329 Sum_probs=151.2
Q ss_pred ceeEEEecCCCC--cEEEE-eecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC-------------------CCCCCee
Q 025173 23 CRAAISRIPGKP--LVMEE-IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------------------MAVFPRI 80 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~-~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-------------------~~~~p~~ 80 (256)
||++++..++.+ +.+.+ .+.|.+.+++|+|||.++++|++|++.+.|.++. ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688898877653 55543 4777789999999999999999999998876531 2356889
Q ss_pred eeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccc
Q 025173 81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV 160 (256)
Q Consensus 81 ~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~ 160 (256)
+|||++|+|+++|+++++|++||+|++.+...|+.|..|.. | .. .|...+|
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~g------------------ 131 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERDG------------------ 131 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCCc------------------
Confidence 99999999999999999999999999887777776655321 1 11 2222234
Q ss_pred cceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 161 g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+|++|+.++.+.++++|+++++++++.+.+++.|||+++ ...++++|++|||+|+ |++|++++++|+.+|++
T Consensus 132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~ 204 (350)
T cd08274 132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI 204 (350)
T ss_pred -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE
Confidence 899999999999999999999999999999999999976 7789999999999998 99999999999999998
No 78
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.95 E-value=1.4e-26 Score=207.49 Aligned_cols=164 Identities=24% Similarity=0.283 Sum_probs=143.1
Q ss_pred eeEEEecC---CCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 24 RAAISRIP---GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 24 ka~~~~~~---g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
||+++.++ +.+ +++.++|.|+|+++||+||++++++|+.|.+.+.+..+. ..+|.++|+|++|+|+++|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL 79 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence 57777775 444 788889999999999999999999999999998887653 456889999999999999999999
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
|++||+|+.... ...+| +|++|+.++.+.++++|
T Consensus 80 ~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~ip 113 (336)
T TIGR02817 80 FKPGDEVWYAGD---------------------------IDRPG-------------------SNAEFHLVDERIVGHKP 113 (336)
T ss_pred CCCCCEEEEcCC---------------------------CCCCC-------------------cccceEEEcHHHcccCC
Confidence 999999975320 01123 89999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCC
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEE-----GSTVAIFGL-GAVGLSVLIRIHLK-FTR 234 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~aiqla~~~-G~~ 234 (256)
+++++++++.++++..|||+++.+..++.+ |++|||+|+ |++|++++|+|+.+ |++
T Consensus 114 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~ 176 (336)
T TIGR02817 114 KSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLT 176 (336)
T ss_pred CCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCE
Confidence 999999999999999999999888888877 999999997 99999999999998 877
No 79
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.95 E-value=4.5e-26 Score=205.46 Aligned_cols=188 Identities=30% Similarity=0.467 Sum_probs=158.1
Q ss_pred ceeEEEecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCC--CCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||+++++.++..+++.+.+.|+|.++|++||+.++++|+.|++.+.+.. .....+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999877669999999999999999999999999999998865432 11124577899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+..+|+.|.+|..+.+++|..... .|...+| +|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTDG-------------------CFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCCC-------------------cceEEEEechHHcEECcCC
Confidence 99999998888999999999999999976422 3333334 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
++++.+ .+...+.++++++. ...++|++|+|.|+|.+|++++|+|+..|.++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~ 190 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASL 190 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 998555 55567788888754 45678999999988999999999999999853
No 80
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.94 E-value=4.5e-26 Score=204.88 Aligned_cols=164 Identities=27% Similarity=0.392 Sum_probs=146.9
Q ss_pred ceeEEEecCCCC---cEEEEeecCCCCC-CeEEEEEeeeecChhhHHhHcCCCCCCCC----CCeeeeeeeeEEEEEccC
Q 025173 23 CRAAISRIPGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRSTQPPMAV----FPRILGHEAVGVVESVGG 94 (256)
Q Consensus 23 ~ka~~~~~~g~~---l~~~~~~~p~~~~-~eVlVkv~a~~i~~~D~~~~~g~~~~~~~----~p~~~G~e~vG~Vv~vG~ 94 (256)
|||+++..++.+ +.+++.|.|+|.+ +||+||+.++++|++|++.+.|..+.... +|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 899999988875 7899999998887 99999999999999999999887653222 677999999999999999
Q ss_pred CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcE
Q 025173 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (256)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~ 174 (256)
++..|++||+|++... .. |+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence 9999999999986431 01 38999999999999
Q ss_pred EEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 175 VKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 175 ~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++|+++++++++.+++.+.|||+++.+...+++|++|||+|+ |++|++++|+|++.|++
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~ 173 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIK 173 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999877788999999999998 99999999999999987
No 81
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.94 E-value=1.8e-25 Score=199.00 Aligned_cols=167 Identities=24% Similarity=0.272 Sum_probs=143.1
Q ss_pred ceeEEEecCCC--CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~--~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||+++++.+++ +++++++|.|.++++||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++ .++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 79999999886 59999999999999999999999999999999998886543456889999999999998 456899
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .|...+| +|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGYD------------------------LGMNTDG-------------------GFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEcccc------------------------cCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence 99999864310 2222334 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcC--CC-CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAE--VE-EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~--~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++.+.|||+++....+ +. .+++|+|+|+ |++|++++|+|+.+|+.
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~ 173 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT 173 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence 9999999999999999998765543 35 4579999998 99999999999999988
No 82
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.94 E-value=2e-25 Score=199.23 Aligned_cols=164 Identities=26% Similarity=0.318 Sum_probs=146.2
Q ss_pred cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173 22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (256)
Q Consensus 22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 99 (256)
||||+++.+++.. +.+++.+.|.+.++||+||+.++++|+.|+....+.++....+|.++|||++|+|+++|+++.++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 7999999988753 66777788888999999999999999999999988765434557789999999999999999999
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
++||+|+.... + |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCCC
Confidence 99999975421 1 2899999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++++.+.+++.|||+++.+.+.+.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~ 167 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAA 167 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence 99999999999999999999888889999999999997 99999999999999987
No 83
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.94 E-value=4.4e-26 Score=200.71 Aligned_cols=133 Identities=25% Similarity=0.426 Sum_probs=118.2
Q ss_pred eeeeeeeEEEEEccCCCc------ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCC-------CCCCccc
Q 025173 80 ILGHEAVGVVESVGGGVE------EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-------RDGTNRF 146 (256)
Q Consensus 80 ~~G~e~vG~Vv~vG~~v~------~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-------~~G~~~~ 146 (256)
++|||++|+|+++|++|+ +|++||||+..+...|+.|.+|+.+++++|++... .|.. .+|
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~~~~~~G---- 73 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDSGWPLSG---- 73 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccCCccccc----
Confidence 479999999999999999 89999999998888999999999999999988654 2221 233
Q ss_pred ccCCCceeeccccccceeeeEEecCC-cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH
Q 025173 147 RDLKGEVIHNVLNVSSFTEYTVVDVT-HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL 225 (256)
Q Consensus 147 ~~~~~~~~~~~~~~g~~aey~~v~~~-~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~ai 225 (256)
+|+||+.++++ .++++|+++++++++.+++...|+|+++ +.....+|++|||+|+|++|++++
T Consensus 74 ---------------~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~ 137 (280)
T TIGR03366 74 ---------------GYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAA 137 (280)
T ss_pred ---------------cceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHH
Confidence 99999999987 7999999999999999999999999986 455667999999999999999999
Q ss_pred HHHHHcCCCc
Q 025173 226 IRIHLKFTRH 235 (256)
Q Consensus 226 qla~~~G~~~ 235 (256)
|+||.+|+++
T Consensus 138 ~~ak~~G~~~ 147 (280)
T TIGR03366 138 AAAAAAGAAR 147 (280)
T ss_pred HHHHHcCCCE
Confidence 9999999974
No 84
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.94 E-value=1.9e-25 Score=201.30 Aligned_cols=182 Identities=29% Similarity=0.476 Sum_probs=155.1
Q ss_pred ecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--CCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEe
Q 025173 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106 (256)
Q Consensus 29 ~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~ 106 (256)
++++.++++++.|.|.|+++||+||+.++++|+.|+..+.+... ....+|.++|+|++|+|+++|+++.+|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 46777799999999999999999999999999999998765421 1123567899999999999999999999999999
Q ss_pred eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhh
Q 025173 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186 (256)
Q Consensus 107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~a 186 (256)
+.+...|+.|..|..+.++.|++.+. .+....| +|++|+.++++.++++|++++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence 98888999999999999999988654 2332344 8999999999999999999998655
Q ss_pred hhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++..+.+|++++ .....+|++|+|.|+|++|.+++|+|+.+|++.
T Consensus 143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~ 188 (340)
T TIGR00692 143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYP 188 (340)
T ss_pred -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 4566888898875 455789999999888999999999999999873
No 85
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=6.1e-25 Score=196.00 Aligned_cols=184 Identities=26% Similarity=0.326 Sum_probs=154.2
Q ss_pred ceeEEEecCC--CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
|||++++..+ ..+++++.+.|.++++|++||+.++++|++|++...|.++.....|.++|||++|+|+++|+.+.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7999998664 23788888888889999999999999999999999887655345688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.....|..+ ..+.|.... ..|...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~------~~~~~~~~~---~~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDG------PPTAEDEAS---ALGGPIDG-------------------VLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEecccccccc------ccccccccc---ccccccCc-------------------eeeeEEEecHHHeEECCCC
Confidence 9999998765555433 333443211 12222233 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++.+++.+.+.+.+||+++.+.+.+++|++|+|+|+|++|++++++|+..|++
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~ 186 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR 186 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE
Confidence 999999999999999999988888999999999998899999999999999998
No 86
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.94 E-value=2.4e-25 Score=200.62 Aligned_cols=149 Identities=17% Similarity=0.104 Sum_probs=124.0
Q ss_pred cEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCC--CCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173 35 LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (256)
Q Consensus 35 l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (256)
+++++.|.|+|. ++||||||.|+|||+.|........ .....+|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 888899999874 9999999999999999964332111 11124678899999999999999999999999997421
Q ss_pred CCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhh----hh
Q 025173 112 DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI----AC 187 (256)
Q Consensus 112 ~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~----aa 187 (256)
++|+||++++++.++++|+++++++ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 1799999999999999999864432 44
Q ss_pred hchhhHHHHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 188 LLSCGVSTGLGAAWKVAEVEEG--STVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++.++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+++|+.
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~ 181 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCS 181 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCC
Confidence 5677899999998888888877 99999998 99999999999999984
No 87
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.94 E-value=2.7e-25 Score=198.66 Aligned_cols=164 Identities=21% Similarity=0.227 Sum_probs=146.4
Q ss_pred cceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173 22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (256)
Q Consensus 22 t~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 99 (256)
|||++++.+++.+ +++++++.|.|+++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~ 79 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI 79 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence 6999999988765 888889999999999999999999999999998887654 3467889999999999999999999
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
++||+|+.... .. |+|++|+.++.+.++++|+
T Consensus 80 ~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp~ 111 (327)
T PRK10754 80 KVGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILPD 111 (327)
T ss_pred CCCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCCC
Confidence 99999974211 01 2899999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++++.+++...|||.++.+.+.+.+|++|+|+|+ |.+|++++|+|+.+|++
T Consensus 112 ~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~ 167 (327)
T PRK10754 112 AISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK 167 (327)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE
Confidence 99999999988899999998888889999999999986 99999999999999997
No 88
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.93 E-value=3.3e-25 Score=199.72 Aligned_cols=162 Identities=25% Similarity=0.305 Sum_probs=133.8
Q ss_pred ccceeEEEecCCC-CcEEEEeec----CCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeee--eEEEEEcc
Q 025173 21 IRCRAAISRIPGK-PLVMEEIEV----DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEA--VGVVESVG 93 (256)
Q Consensus 21 ~t~ka~~~~~~g~-~l~~~~~~~----p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~--vG~Vv~vG 93 (256)
..+|+++...+.. -|++++.++ |+|+++||||||+|++||+.|++.+.|.++....+|+++|++. .|.+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~ 85 (338)
T cd08295 6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD 85 (338)
T ss_pred EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence 3456666544432 288888877 7899999999999999999999999885432124577888754 45555577
Q ss_pred CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC-C
Q 025173 94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-T 172 (256)
Q Consensus 94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~-~ 172 (256)
+.++.|++||+|+.. |+|+||++++. +
T Consensus 86 ~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~ 113 (338)
T cd08295 86 SGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQ 113 (338)
T ss_pred cCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchh
Confidence 888899999999632 27999999999 7
Q ss_pred cEEEcC-CCCChh-hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 173 HVVKIT-PDIPLD-IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 173 ~~~~~p-~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++++| ++++++ +++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|++
T Consensus 114 ~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~ 178 (338)
T cd08295 114 DLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY 178 (338)
T ss_pred ceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence 999995 678887 788899999999999888899999999999998 99999999999999997
No 89
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.93 E-value=1.1e-24 Score=194.25 Aligned_cols=166 Identities=22% Similarity=0.258 Sum_probs=140.9
Q ss_pred eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||+++...+.+ ++++++|.|.++++||+||+.++++|++|++.+.|.++....+|.++|||++|+|+. .++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 67888877764 688999999999999999999999999999999887643345688999999999998 55678999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.... .|...+| +|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVSHDG-------------------GYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCCCCc-------------------cceEEEEEchhheEECCCCC
Confidence 9999865321 1222233 89999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHh--cCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKV--AEVEEGS-TVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~-~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++.+++.+.||+.++... +++.+|+ +|+|+|+ |.+|++++|+|+.+|+.
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~ 172 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYE 172 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe
Confidence 9999999999999998876433 3488998 9999998 99999999999999987
No 90
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.93 E-value=4.7e-25 Score=190.41 Aligned_cols=160 Identities=33% Similarity=0.536 Sum_probs=141.9
Q ss_pred eEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCC
Q 025173 49 EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS 128 (256)
Q Consensus 49 eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~ 128 (256)
||+||+.++++|+.|++.+.+.++....+|.++|||++|+|+++|+++..|++||+|+......|+.|.+|+. .|+
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 6899999999999999999887652245688999999999999999999999999999999899999999986 676
Q ss_pred cCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCC
Q 025173 129 KFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEE 208 (256)
Q Consensus 129 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~ 208 (256)
.... .+...+| +|++|+.++.+.++++|+++++++++.+++++.|||+++.....+.+
T Consensus 77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 6554 3333344 99999999999999999999999999999999999999877777799
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+++|+|+|+|++|++++++++..|.+
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~ 160 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGAR 160 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe
Confidence 99999999966999999999999976
No 91
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.93 E-value=1.1e-24 Score=194.47 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=137.9
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
|||+++.+++++ +++++.+.|.|+++||+||+.++++|++|.+...+.......+|.++|||++|+|++.| +..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 799999988764 77899999999999999999999999999877653222113458899999999999954 56799
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .|...+| +|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVSHHG-------------------GYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence 99999865421 2222334 9999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhc--C-CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVA--E-VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~--~-~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++.+.|||.++.... . ...+++|||+|+ |++|++++|+|+.+|++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~ 173 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE 173 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe
Confidence 999999999999999998875433 3 345789999998 99999999999999987
No 92
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=1.1e-24 Score=194.80 Aligned_cols=161 Identities=26% Similarity=0.269 Sum_probs=143.5
Q ss_pred cceeEEEecCCC----CcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173 22 RCRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 22 t~ka~~~~~~g~----~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
.||++++.+++. ++++++++.|.+.++||+||+.++++|+.|++...|.++....+|.++|||++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999998766 3889999999999999999999999999999998887654346788999999999999999999
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
++++||+|++... |+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~~--------------------------------------------------g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMSF--------------------------------------------------GAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEecC--------------------------------------------------cceeEEEEechHHeEEC
Confidence 9999999986421 28999999999999999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
|++ ..+++.+++++.|||+++.+..++.+|++|+|+|+ |.+|++++|+|+..|+.
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~ 166 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH 166 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe
Confidence 997 35677888899999999888889999999999997 99999999999999987
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.93 E-value=1.3e-24 Score=194.17 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=129.9
Q ss_pred cceeEEEecC--CCC----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCC
Q 025173 22 RCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG 95 (256)
Q Consensus 22 t~ka~~~~~~--g~~----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~ 95 (256)
.||+|++.++ +.+ +++++.+.|+|+++||||||.+++||+.|.+.... + ..+|.++|+|++|+|++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~ 74 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---K 74 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---C
Confidence 5899999883 333 88899999999999999999999999987652211 1 24688999999999995 3
Q ss_pred CcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC---
Q 025173 96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--- 172 (256)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~--- 172 (256)
++.|++||+|+.. ++|++|+.++.+
T Consensus 75 ~~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~ 102 (329)
T cd08294 75 NSKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQP 102 (329)
T ss_pred CCCCCCCCEEEee----------------------------------------------------CCeeeEEEECCcccc
Confidence 4579999999742 169999999999
Q ss_pred cEEEcCCCCC-----hhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 173 HVVKITPDIP-----LDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 173 ~~~~~p~~l~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++++|++++ ...++.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|++
T Consensus 103 ~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~ 170 (329)
T cd08294 103 DLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCK 170 (329)
T ss_pred ceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence 9999999988 23334677899999999888899999999999997 99999999999999997
No 94
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.93 E-value=1.5e-24 Score=192.04 Aligned_cols=166 Identities=31% Similarity=0.436 Sum_probs=143.0
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++...+.+ +++.+.+.|.++++||+||+.++++|+.|++...+.++. ...|.++|||++|+|+++|. ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~ 77 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT 77 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence 688898876643 667777777889999999999999999999999887643 45678999999999999995 5799
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .+...+| +|++|+.++.+.++++|++
T Consensus 78 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~ 114 (320)
T cd08243 78 PGQRVATAMGG------------------------MGRTFDG-------------------SYAEYTLVPNEQVYAIDSD 114 (320)
T ss_pred CCCEEEEecCC------------------------CCCCCCc-------------------ccceEEEcCHHHcEeCCCC
Confidence 99999875321 1111223 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++++.|||+++.+..++++|++|+|+|+ |++|++++|+|+.+|++
T Consensus 115 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~ 169 (320)
T cd08243 115 LSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT 169 (320)
T ss_pred CCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE
Confidence 9999999999999999999888888999999999998 99999999999999988
No 95
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.93 E-value=2.5e-24 Score=192.84 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=123.2
Q ss_pred cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCC
Q 025173 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG 114 (256)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 114 (256)
+++++.+.|+|++|||||||.|+++|+.|. .|.++. ...|.++|.|++|+|++.|+ +|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------ 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------ 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe------
Confidence 888899999999999999999999999654 344332 23578999999999999874 59999999742
Q ss_pred CCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc----CCCCChhhh-hhc
Q 025173 115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI----TPDIPLDIA-CLL 189 (256)
Q Consensus 115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~----p~~l~~~~a-a~l 189 (256)
++|++|+.++.+.+.++ |++++++++ +++
T Consensus 86 ----------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l 119 (325)
T TIGR02825 86 ----------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTV 119 (325)
T ss_pred ----------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhc
Confidence 16899999999988887 899999987 678
Q ss_pred hhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 190 SCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 190 ~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|++
T Consensus 120 ~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~ 165 (325)
T TIGR02825 120 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK 165 (325)
T ss_pred ccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence 8999999999888999999999999997 99999999999999987
No 96
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.93 E-value=3.2e-24 Score=194.72 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=132.0
Q ss_pred cccceeEEEecC--CCC----cEEEEe---ecCC-CCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeee--eeeE
Q 025173 20 IIRCRAAISRIP--GKP----LVMEEI---EVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH--EAVG 87 (256)
Q Consensus 20 ~~t~ka~~~~~~--g~~----l~~~~~---~~p~-~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~--e~vG 87 (256)
+.+.|.+++... +.+ |++++. +.|. +++||||||+.|+++|+.|...+.+.... ..+|+++|+ |++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G 84 (348)
T PLN03154 6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFG 84 (348)
T ss_pred cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeE
Confidence 455688888443 222 777663 5553 47999999999999999998755443322 246889997 8899
Q ss_pred EEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeE
Q 025173 88 VVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167 (256)
Q Consensus 88 ~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~ 167 (256)
+|+.+|+++++|++||+|+.. |+|+||.
T Consensus 85 ~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey~ 112 (348)
T PLN03154 85 VSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEYS 112 (348)
T ss_pred EEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEEE
Confidence 999999999999999999632 2799999
Q ss_pred EecCCc--EEE--cCCCCChh-hhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 168 VVDVTH--VVK--ITPDIPLD-IACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 168 ~v~~~~--~~~--~p~~l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++.+. +++ +|++++++ +||.+++++.|||+++.+.+++++|++|||+|+ |++|++++|+||++|++
T Consensus 113 ~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~ 185 (348)
T PLN03154 113 LIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY 185 (348)
T ss_pred EEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence 998753 544 48999986 688899999999999888889999999999998 99999999999999987
No 97
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.93 E-value=3.8e-24 Score=190.68 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=139.7
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
|||+++.++|.+ ++++++|.|+|+++||+||+.++++|++|.+.+.|.++....+|.++|||++|+|++ +++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 789999988753 889999999999999999999999999999998887643234678899999999999 6677899
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .+...+| +|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VGERHWG-------------------GYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CCCCCCC-------------------cceeEEEEchHHeeeCCCC
Confidence 99999864211 1111123 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHH--HhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAW--KVAEVE-EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~--~~~~~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++.+.|++.++. +..+.. ++++|+|+|+ |++|++++|+|+.+|++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~ 173 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYE 173 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCe
Confidence 999999999999999987653 224445 6789999998 99999999999999997
No 98
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.92 E-value=3.4e-24 Score=190.66 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=141.7
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
|||+++++++.+ +.+.+.+.|.+.++||+||+.++++|++|++.+.|..+. ...+|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999876654 666777777789999999999999999999999886532 2356788999999999999999999
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
+++||+|++... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence 999999986531 012 389999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++++.+++.+.||| ++.+.++++++++|+|+|+ |++|++++++|+.+|+.
T Consensus 114 ~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~ 169 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT 169 (324)
T ss_pred CCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE
Confidence 9999999999999999995 4678889999999999997 99999999999999987
No 99
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.92 E-value=3.9e-24 Score=192.74 Aligned_cols=166 Identities=25% Similarity=0.273 Sum_probs=144.5
Q ss_pred ceeEEEecCCCC---cEEEEeecCCC-CCCeEEEEEeeeecChhhHHhHcCCCCC--------------CCCCCeeeeee
Q 025173 23 CRAAISRIPGKP---LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--------------MAVFPRILGHE 84 (256)
Q Consensus 23 ~ka~~~~~~g~~---l~~~~~~~p~~-~~~eVlVkv~a~~i~~~D~~~~~g~~~~--------------~~~~p~~~G~e 84 (256)
||++++.+++++ +++++++.|+| +++||+||+.++++|++|++.+.|.... ...+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 789999988876 88899999999 4999999999999999999998874210 13568899999
Q ss_pred eeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeecccccccee
Q 025173 85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT 164 (256)
Q Consensus 85 ~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~a 164 (256)
++|+|+++|+++.++++||+|++.... ..+ |+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence 999999999999999999999865321 012 3899
Q ss_pred eeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCC----CCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 165 EYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEE----GSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 165 ey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+|+.++.+.++++|+++++++++.+++.+.|||+++.+.+.+.+ |++|+|+|+ |++|++++++|+.+|+.
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~ 189 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH 189 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCe
Confidence 99999999999999999999999999999999998877777754 999999997 99999999999999997
No 100
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=7e-24 Score=189.35 Aligned_cols=162 Identities=27% Similarity=0.370 Sum_probs=145.4
Q ss_pred eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|++++...+.+ +++++.+.|.|.++||+||+.++++|++|...+.+.++....+|.++|||++|+|+.+|+++..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 78888887755 8888889999999999999999999999999998876543356889999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++... + |+|++|+.++.+.++++|+++
T Consensus 82 Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~~ 112 (331)
T cd08273 82 GDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEGV 112 (331)
T ss_pred CCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCCC
Confidence 999986531 1 289999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++.+++++.+||+++.+...+.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus 113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~ 166 (331)
T cd08273 113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE 166 (331)
T ss_pred CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE
Confidence 999999999999999999877789999999999998 99999999999999986
No 101
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=6.4e-24 Score=187.53 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=136.3
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+.+ + +++++.+.|.++++||+||+.++++|+.|.+.+.+. ..|.++|||++|+|+++|+++..|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~ 74 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPA 74 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCC
Confidence 6889998754 4 666788889899999999999999999999887632 2357899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|+.... + |+|++|+.++.+.++++|++
T Consensus 75 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~~ 105 (305)
T cd08270 75 VGARVVGLGA------------------------------M-------------------GAWAELVAVPTGWLAVLPDG 105 (305)
T ss_pred CCCEEEEecC------------------------------C-------------------cceeeEEEEchHHeEECCCC
Confidence 9999985421 1 28999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++.+.|||+++.+.... +|++|+|+|+ |++|++++++|+..|++
T Consensus 106 ~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~ 159 (305)
T cd08270 106 VSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAH 159 (305)
T ss_pred CCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCE
Confidence 99999999999999999987665555 5999999998 99999999999999987
No 102
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.92 E-value=6.6e-24 Score=190.10 Aligned_cols=165 Identities=26% Similarity=0.281 Sum_probs=143.2
Q ss_pred ceeEEEecCCCC-----cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc
Q 025173 23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (256)
Q Consensus 23 ~ka~~~~~~g~~-----l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 97 (256)
||++++.+++.+ ++.++++.|++.++||+||+.++++|++|++.+.+.++. ..+|.++|||++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~ 79 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT 79 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence 689999998864 555677888889999999999999999999998887653 34677899999999999999999
Q ss_pred ccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
.|++||+|+.... ...+| +|++|+.++.+.++++
T Consensus 80 ~~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~i 113 (336)
T cd08252 80 LFKVGDEVYYAGD---------------------------ITRPG-------------------SNAEYQLVDERIVGHK 113 (336)
T ss_pred CCCCCCEEEEcCC---------------------------CCCCc-------------------cceEEEEEchHHeeeC
Confidence 9999999985321 01123 8999999999999999
Q ss_pred CCCCChhhhhhchhhHHHHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CC
Q 025173 178 TPDIPLDIACLLSCGVSTGLGAAWKVAEVEE-----GSTVAIFGL-GAVGLSVLIRIHLKF-TR 234 (256)
Q Consensus 178 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~aiqla~~~G-~~ 234 (256)
|++++.++++.+++.+.|||+++.+.+.+.+ |++|+|+|+ |++|++++|+|+.+| ++
T Consensus 114 p~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~ 177 (336)
T cd08252 114 PKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLT 177 (336)
T ss_pred CCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcE
Confidence 9999999999999999999999888888887 999999996 999999999999999 66
No 103
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.92 E-value=3.3e-24 Score=193.39 Aligned_cols=169 Identities=29% Similarity=0.402 Sum_probs=144.1
Q ss_pred ceeEEEecCC-CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 23 ~ka~~~~~~g-~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||+++++.++ ..+++++++.|+|+++||+||+.++++|++|++.+.+.++ ..+|.++|||++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKV 78 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence 7899999884 2288899999999999999999999999999988766541 235779999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.....|. +...+ |+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~ 117 (339)
T cd08249 79 GDRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNI 117 (339)
T ss_pred CCEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCC
Confidence 9999976532111 11112 389999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEV----------EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++++.+++.+.|||+++.+..++ .++++|+|+|+ |.+|++++++|+.+|+.
T Consensus 118 ~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~ 181 (339)
T cd08249 118 SFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK 181 (339)
T ss_pred CHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCe
Confidence 9999999999999999987666554 78999999998 99999999999999987
No 104
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.92 E-value=1e-23 Score=185.84 Aligned_cols=163 Identities=27% Similarity=0.395 Sum_probs=144.8
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+.+.+ +++++.+.|.+.++||+||+.++++|+.|++.+.+.++....+|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 799999886554 777788877788999999999999999999998887654345688999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++... + |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCCC
Confidence 9999986421 1 28999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.++..+.++|+++.+.+.+.++++|+|+|+ |++|++++++++..|+.
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~ 166 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGAR 166 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCE
Confidence 9999999999999999999888889999999999998 99999999999999988
No 105
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.92 E-value=1.8e-23 Score=184.66 Aligned_cols=168 Identities=27% Similarity=0.410 Sum_probs=146.7
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++..++.+ +.+++++.|.+.+++|+|++.++++|++|++.+.|.++.....|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 688888876544 778888988899999999999999999999998887654346788999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .+ ..+| ++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~------------------------~~-~~~g-------------------~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLG------------------------WG-RRQG-------------------TAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEeccc------------------------cC-CCCc-------------------ceeeEEEecHHHcEeCCCC
Confidence 99999876421 00 0123 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++++.+||+++.+..++.+|++|+|+|+ |++|++++++++..|+.
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~ 171 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR 171 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence 9999999999999999999888899999999999997 99999999999999987
No 106
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.91 E-value=1e-24 Score=166.16 Aligned_cols=109 Identities=39% Similarity=0.703 Sum_probs=96.9
Q ss_pred CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCC
Q 025173 47 AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNI 126 (256)
Q Consensus 47 ~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~ 126 (256)
|+||||||.+++||++|++.+.+.......+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+.+++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999999544446899999999999999999999999999999998888899999999999999
Q ss_pred CCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEc
Q 025173 127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (256)
Q Consensus 127 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~ 177 (256)
|++.+. .|...+| +|+||+++++++++++
T Consensus 81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence 988877 6766777 9999999999999875
No 107
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.91 E-value=8e-23 Score=184.90 Aligned_cols=166 Identities=21% Similarity=0.313 Sum_probs=139.8
Q ss_pred eeEEEecCCCCcEEEEeecCCC---CCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCc-cc
Q 025173 24 RAAISRIPGKPLVMEEIEVDPP---KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-EV 99 (256)
Q Consensus 24 ka~~~~~~g~~l~~~~~~~p~~---~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~-~~ 99 (256)
|++++..++.++++++++.|.| +++||+||+.++++|++|+..+.+.......+|.++|+|++|+|+++|+++. +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6899999988888877777766 8999999999999999999887653322122478899999999999999998 89
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCC----cEE
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT----HVV 175 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~----~~~ 175 (256)
++||+|++.....| + .+ |+|++|+.++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~-----------------------~--~~-------------------g~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPY-----------------------G--GQ-------------------GTLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCC-----------------------C--CC-------------------ceeeEEEEEccccccceeE
Confidence 99999987543211 0 12 389999999987 789
Q ss_pred EcCCCCChhhhhhchhhHHHHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC
Q 025173 176 KITPDIPLDIACLLSCGVSTGLGAAWKVA-EVEEGSTVAIFGL-GAVGLSVLIRIHLKFT 233 (256)
Q Consensus 176 ~~p~~l~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~ 233 (256)
++|+++++++++.+++++.|||+++.+.. ++++|++|+|+|+ |++|++++|+|+.+|.
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~ 177 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYN 177 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCC
Confidence 99999999999999999999999887766 7999999999998 8999999999999854
No 108
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=4.6e-23 Score=182.52 Aligned_cols=168 Identities=27% Similarity=0.358 Sum_probs=146.2
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+++.+ +++++.+.|.+.+++|+|++.++++|++|+....+.+.....+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 789999888765 777888888889999999999999999999998887543234678899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... .+ ..+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~------------------------~~-~~~-------------------g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAGG------------------------LG-GLQ-------------------GSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccCC------------------------cC-CCC-------------------CceeEEEEecHHHcccCCCC
Confidence 99999864310 00 012 38999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++.+++.+++.+.+||+++.+..++++|++++|+|+ |.+|++++++|+..|+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~ 171 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR 171 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE
Confidence 9999999999999999998888899999999999996 99999999999999987
No 109
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=9.3e-23 Score=180.92 Aligned_cols=165 Identities=33% Similarity=0.427 Sum_probs=146.0
Q ss_pred ceeEEEecCC--CCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g--~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++.+++ ..+++++++.|++.+++|+||+.++++|++|+..+.+.... ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~ 79 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK 79 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence 7999999988 24999999999999999999999999999999988776532 22467899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.... ..+| +|++|+.++.+.++++|++
T Consensus 80 ~Gd~V~~~~~~---------------------------~~~~-------------------~~~s~~~~~~~~~~~ip~~ 113 (325)
T cd08271 80 VGDRVAYHASL---------------------------ARGG-------------------SFAEYTVVDARAVLPLPDS 113 (325)
T ss_pred CCCEEEeccCC---------------------------CCCc-------------------cceeEEEeCHHHeEECCCC
Confidence 99999865311 0122 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++..+++.+.+.+.+|++++.+.+++.+|++|+|+|+ |++|++++++|+..|+.
T Consensus 114 ~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~ 168 (325)
T cd08271 114 LSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR 168 (325)
T ss_pred CCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence 9999999999999999999888889999999999998 89999999999999987
No 110
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=1.2e-22 Score=179.84 Aligned_cols=168 Identities=31% Similarity=0.394 Sum_probs=144.8
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++++...+.+ +.+++.+.|.+++++|+|++.++++|+.|+....+.+.....+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 688888876543 667777778889999999999999999999988777654334578899999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|++.+.. +...+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~-------------------------~~~~~-------------------g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAA-------------------------DLGQY-------------------GTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEecccc-------------------------ccCCC-------------------ccceEEEEechHhcEeCCCC
Confidence 99999875421 01112 38999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++++.+++.+.++|.++.+...+.++++|+|+|+ |++|++++++++..|+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~ 171 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGAT 171 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE
Confidence 9999999999999999999888889999999999998 99999999999999987
No 111
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.90 E-value=6.8e-23 Score=182.21 Aligned_cols=151 Identities=25% Similarity=0.336 Sum_probs=135.4
Q ss_pred cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCC
Q 025173 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG 114 (256)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 114 (256)
+++++.+.|++.++||+||+.++++|+.|...+.+.+.....+|.++|||++|+|+++|++++++++||+|++.+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 5566778888899999999999999999999988776543456789999999999999999999999999986531
Q ss_pred CCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHH
Q 025173 115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194 (256)
Q Consensus 115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ 194 (256)
+ |+|++|+.++.+.++++|+++++++++.+++...
T Consensus 90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 1 2899999999999999999999999999989999
Q ss_pred HHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 195 TGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 195 ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
|||+++.+.+.+.+|++|+|+|+ |.+|++++|+|+.+|+.
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~ 165 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFK 165 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCe
Confidence 99999888888999999999998 89999999999999988
No 112
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=182.91 Aligned_cols=181 Identities=29% Similarity=0.424 Sum_probs=137.7
Q ss_pred cceeEEEecC-CCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCC---CCCeeeeeeeeEE---EEEc
Q 025173 22 RCRAAISRIP-GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA---VFPRILGHEAVGV---VESV 92 (256)
Q Consensus 22 t~ka~~~~~~-g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~---~~p~~~G~e~vG~---Vv~v 92 (256)
+++.+++..+ +.+ ...++.++|.|+++|++|++.++++|+.|++++.|.+.... .+|.+.+.++.|. +...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~ 83 (347)
T KOG1198|consen 4 KIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESV 83 (347)
T ss_pred ccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecc
Confidence 3444444433 332 44477899999999999999999999999999999987755 6775555555555 3344
Q ss_pred c-CCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC
Q 025173 93 G-GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (256)
Q Consensus 93 G-~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~ 171 (256)
| ..+..+..||.+.... .+ |+|+||+++|.
T Consensus 84 g~~~~~~~~~g~~~~~~~------------------------------~~-------------------g~~aey~v~p~ 114 (347)
T KOG1198|consen 84 GDDVVGGWVHGDAVVAFL------------------------------SS-------------------GGLAEYVVVPE 114 (347)
T ss_pred ccccccceEeeeEEeecc------------------------------CC-------------------CceeeEEEcch
Confidence 4 2233455555443221 22 39999999999
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHHhc------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceee
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWKVA------EVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
..++++|+++++++||.++.++.|||.++.... +.++|++|||+|+ |++|++++|+|++.|+.+++ .+
T Consensus 115 ~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~-----t~ 189 (347)
T KOG1198|consen 115 KLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVV-----TA 189 (347)
T ss_pred hhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEE-----EE
Confidence 999999999999999999999999999999999 8999999999987 89999999999999954222 34
Q ss_pred EeechhhhhhcC
Q 025173 245 LMSEVQEMYSQL 256 (256)
Q Consensus 245 ~~~~~~~~~~~l 256 (256)
+..+..+..+.|
T Consensus 190 ~s~e~~~l~k~l 201 (347)
T KOG1198|consen 190 CSKEKLELVKKL 201 (347)
T ss_pred cccchHHHHHHc
Confidence 555666666543
No 113
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.89 E-value=7.5e-22 Score=174.46 Aligned_cols=163 Identities=28% Similarity=0.388 Sum_probs=143.0
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccC
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 100 (256)
||++.+..++.+ +.+++.+.|.+++++|+||+.++++|+.|++...+.++....+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 678888776655 666777777788999999999999999999998876654344678999999999999999999999
Q ss_pred CCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCC
Q 025173 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (256)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~ 180 (256)
+||+|+.... +| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALVA------------------------------GG-------------------GYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEccC------------------------------CC-------------------cceeEEEecHHHcEeCCCC
Confidence 9999986421 12 8999999999999999999
Q ss_pred CChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 181 IPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 181 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++.+++.++.++.|+|+++.+...+.++++|+|+|+ |++|++++++++..|+.
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~ 166 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGAR 166 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCE
Confidence 9999999999999999998888899999999999997 99999999999999987
No 114
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.89 E-value=6.6e-22 Score=174.00 Aligned_cols=160 Identities=29% Similarity=0.348 Sum_probs=139.2
Q ss_pred eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
||+.+..++.+ +.+.+.+.|.+.++||+||+.++++|+.|++...+.++. .+|.++|||++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV 78 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence 45666655543 566677777788999999999999999999998887653 45778999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|++.. .. |+|++|+.++.+.++++|+++
T Consensus 79 G~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~ 109 (320)
T cd05286 79 GDRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGI 109 (320)
T ss_pred CCEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCC
Confidence 99998542 01 289999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+.++++.+.....++|+++.+..++.+|++|+|+|+ |++|++++++|+.+|+.
T Consensus 110 ~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~ 163 (320)
T cd05286 110 SDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT 163 (320)
T ss_pred CHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE
Confidence 999999988899999998888889999999999997 99999999999999987
No 115
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.89 E-value=8.9e-22 Score=174.22 Aligned_cols=152 Identities=26% Similarity=0.360 Sum_probs=128.6
Q ss_pred ecCCCCcEEEEeecCCCCCCeEEEEEeeeecChhhHHhH-cCCCCC-CCCCCeeeeeeeeEEEEEccCCCcccCCCCEEe
Q 025173 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-MAVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106 (256)
Q Consensus 29 ~~~g~~l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~-~g~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~ 106 (256)
++.+. +++++++.|++.++||+||+.++++|++|++.+ .|..+. ...+|.++|+|++|+|+++|++++++++||+|+
T Consensus 2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 34455 889999999999999999999999999999988 665432 123478999999999999999999999999998
Q ss_pred eecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhh
Q 025173 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186 (256)
Q Consensus 107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~a 186 (256)
+... |+|++|+.++.+.++++|+++ ..+
T Consensus 81 ~~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~ 108 (312)
T cd08269 81 GLSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQ 108 (312)
T ss_pred EecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhh
Confidence 6431 289999999999999999998 233
Q ss_pred hhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 187 CLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 187 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+....++.++++++. .++++++++|+|+|+|++|.+++|+|+..|+.
T Consensus 109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~ 155 (312)
T cd08269 109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGAR 155 (312)
T ss_pred HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 332367889999765 88899999999998899999999999999987
No 116
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.89 E-value=7.5e-22 Score=173.26 Aligned_cols=166 Identities=25% Similarity=0.361 Sum_probs=142.6
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCC--CCCCCCeeeeeeeeEEEEEccCCCcc
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEE 98 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~vG~Vv~vG~~v~~ 98 (256)
||++++..++.. +.+++.+.|.++++||+||+.++++|+.|+..+.+... ....+|..+|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 688998877754 45667777788999999999999999999999887653 12345789999999999999999999
Q ss_pred cCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcC
Q 025173 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (256)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p 178 (256)
+++||+|+..... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence 9999999865310 011 289999999999999999
Q ss_pred CCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 179 PDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 179 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++++.+++.+++.+.++++++.+...+.+|++|+|+|+ |.+|++++++|+..|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~ 171 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR 171 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE
Confidence 999999999999999999998877777999999999998 99999999999999987
No 117
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.88 E-value=1.3e-21 Score=171.53 Aligned_cols=145 Identities=30% Similarity=0.379 Sum_probs=129.4
Q ss_pred cCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCC
Q 025173 42 VDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKS 121 (256)
Q Consensus 42 ~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~ 121 (256)
.|++.+++|+||+.++++|+.|++.+.+.++....+|.++|+|++|+|+++|+++.++++||+|++....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 5778899999999999999999999988765434568899999999999999999999999999865321
Q ss_pred CCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHH
Q 025173 122 PKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAW 201 (256)
Q Consensus 122 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~ 201 (256)
.+ |+|++|+.++.+.++++|+++++++++.++..+.+||+++
T Consensus 72 ------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 ------------------SM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred ------------------CC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 12 2899999999999999999999999999999999999986
Q ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 202 KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 202 ~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+...+++|++|+|+|+ |++|++++|+|+.+|+.
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~ 147 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAE 147 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE
Confidence 5789999999999976 99999999999999987
No 118
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=3.6e-21 Score=171.58 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=138.6
Q ss_pred eeEEEecCCCC--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCC
Q 025173 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (256)
Q Consensus 24 ka~~~~~~g~~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~v 101 (256)
|++++...+.+ +.+++.+.|.|.++||+||+.++++|+.|.+.+.+.++.....|.++|||++|+|+.+|+.+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 45666655432 7777778788899999999999999999999988876433355778999999999999999999999
Q ss_pred CCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCC
Q 025173 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (256)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l 181 (256)
||+|+.... + |+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence 999986532 1 289999999999999999999
Q ss_pred ChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc
Q 025173 182 PLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLK 231 (256)
Q Consensus 182 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~ 231 (256)
++++++.+++++.++|+++.+..++++|++|+|+|+ |.+|++++++|+..
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~ 162 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV 162 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence 999999999999999999888899999999999998 99999999999998
No 119
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=2.5e-21 Score=171.25 Aligned_cols=153 Identities=26% Similarity=0.332 Sum_probs=134.5
Q ss_pred EEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCC
Q 025173 36 VMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDC 113 (256)
Q Consensus 36 ~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c 113 (256)
++++.+.|+++++||+|++.++++|++|++.+.|.++. ....|..+|||++|+|+++|+++.++++||+|+.....
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 77888999999999999999999999999998886532 12346789999999999999999999999999865321
Q ss_pred CCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhH
Q 025173 114 GECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193 (256)
Q Consensus 114 ~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~ 193 (256)
... |+|++|+.++.+.++++|+++++++++.+++++
T Consensus 93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 011 289999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 194 STGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 194 ~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+||+++.+...+++|++|+|+|+ |++|++++++|+.+|++
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~ 170 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH 170 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE
Confidence 999999877777999999999998 99999999999999997
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.87 E-value=6.1e-21 Score=168.31 Aligned_cols=162 Identities=29% Similarity=0.444 Sum_probs=139.3
Q ss_pred ceeEEEecCCCC--cEEEEeecCCCC-CCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCccc
Q 025173 23 CRAAISRIPGKP--LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (256)
Q Consensus 23 ~ka~~~~~~g~~--l~~~~~~~p~~~-~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 99 (256)
|+++++..++.+ +++.+.+ |.+. +++++||+.++++|++|++.+.+.+......|.++|||++|+|+.+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688888755443 6666776 6666 59999999999999999999887764323446789999999999999999999
Q ss_pred CCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCC
Q 025173 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (256)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~ 179 (256)
++||+|+.... + |+|++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCCC
Confidence 99999986531 1 2899999999999999999
Q ss_pred CCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 180 DIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 180 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++..+++.+.....+|+.++.+...+.++++|+|+|+ |++|++++++|+..|+.
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~ 166 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGAR 166 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE
Confidence 99999998888899999998877889999999999998 99999999999999987
No 121
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.87 E-value=5.8e-21 Score=170.54 Aligned_cols=158 Identities=23% Similarity=0.216 Sum_probs=130.0
Q ss_pred ceeEEEecCCC----C--cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCC--CCCCCeeeeeeeeEEEEEccC
Q 025173 23 CRAAISRIPGK----P--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGG 94 (256)
Q Consensus 23 ~ka~~~~~~g~----~--l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~vG~Vv~vG~ 94 (256)
.|+|++.+..+ + +++++++.|++.++||+||+.++++|+.|.....+.... +...+.++|+|++|+|+++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 46677765431 1 888999999999999999999999999887665553211 112356789999999999996
Q ss_pred CCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecC-Cc
Q 025173 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-TH 173 (256)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~-~~ 173 (256)
. ++++||+|+.. ++|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence 4 79999999742 16999999999 99
Q ss_pred EEEcCCCCC--hhhhhh-chhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 174 VVKITPDIP--LDIACL-LSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 174 ~~~~p~~l~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++|++++ +.+++. +++++.|||+++.+.+.+.++++|||+|+ |++|++++|+|+..|+.
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~ 172 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR 172 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCE
Confidence 999999995 445555 88899999999888888999999999996 99999999999999986
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.85 E-value=2.3e-20 Score=161.77 Aligned_cols=134 Identities=27% Similarity=0.332 Sum_probs=122.2
Q ss_pred CeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCC
Q 025173 48 GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127 (256)
Q Consensus 48 ~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c 127 (256)
+||+||+.++++|++|++...+.++ .+|.++|||++|+|+++|+.+..+++||+|+....
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~----------------- 60 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP----------------- 60 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec-----------------
Confidence 5899999999999999999988752 35789999999999999999999999999986421
Q ss_pred CcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCC
Q 025173 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVE 207 (256)
Q Consensus 128 ~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~ 207 (256)
|+|+||+.++.+.++++|+++++.+++.++++..|+|.++.+...++
T Consensus 61 ---------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 107 (293)
T cd05195 61 ---------------------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQ 107 (293)
T ss_pred ---------------------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccC
Confidence 28999999999999999999999999999999999999988888999
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+|++|+|+|+ |++|++++|+|+.+|++
T Consensus 108 ~g~~vlv~g~~g~~g~~~~~~a~~~g~~ 135 (293)
T cd05195 108 KGESVLIHAAAGGVGQAAIQLAQHLGAE 135 (293)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHcCCE
Confidence 9999999986 99999999999999987
No 123
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.82 E-value=4.1e-19 Score=153.93 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=117.6
Q ss_pred EEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCc
Q 025173 52 IKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131 (256)
Q Consensus 52 Vkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~ 131 (256)
||+.++++|++|++.+.+.++ .|.++|||++|+|+++|+.+..+++||+|+....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--------------------- 56 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP--------------------- 56 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC---------------------
Confidence 789999999999999988653 3578999999999999999999999999986421
Q ss_pred cCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCE
Q 025173 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGST 211 (256)
Q Consensus 132 ~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~ 211 (256)
|+|++|+.++.+.++++|+++++++++.+.+.+.++|+++.+...+.+|++
T Consensus 57 -----------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~ 107 (288)
T smart00829 57 -----------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGES 107 (288)
T ss_pred -----------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCE
Confidence 289999999999999999999999999999999999998878889999999
Q ss_pred EEEECC-CHHHHHHHHHHHHcCCC
Q 025173 212 VAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 212 VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
|+|+|+ |.+|++++++|+..|++
T Consensus 108 vlv~g~~~~~g~~~~~~a~~~g~~ 131 (288)
T smart00829 108 VLIHAAAGGVGQAAIQLAQHLGAE 131 (288)
T ss_pred EEEecCCcHHHHHHHHHHHHcCCE
Confidence 999996 99999999999999987
No 124
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.79 E-value=8.7e-19 Score=152.09 Aligned_cols=158 Identities=25% Similarity=0.245 Sum_probs=124.1
Q ss_pred cEEEEeecCCCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeeeeeeEEEEEcc--CCCcccCCCCEEeeecccC
Q 025173 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG--GGVEEVREGDLVLPVFQGD 112 (256)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~vGd~V~~~~~~~ 112 (256)
|++++.++|+|+++|||+|+.|.++++.... +....+. .-.|+-+|-..+|.++... ++...|++||.|+...
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~S-Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~--- 101 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPS-YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS--- 101 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCcc-cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence 9999999999999999999999999984332 3333332 3456667766554444332 5567899999997532
Q ss_pred CCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChh--hhhhch
Q 025173 113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD--IACLLS 190 (256)
Q Consensus 113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~--~aa~l~ 190 (256)
+|+||.+++.+.+.++.++.-+. ....+.
T Consensus 102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG 132 (340)
T COG2130 102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG 132 (340)
T ss_pred -------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence 79999999999999998654322 233466
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173 191 CGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS 254 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~ 254 (256)
.+..|||.+|.+.++.++||+|+|.+| |++|..+.|+||.+|++ +|.+...+|+.+
T Consensus 133 mpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~r--------VVGiaGg~eK~~ 189 (340)
T COG2130 133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCR--------VVGIAGGAEKCD 189 (340)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCe--------EEEecCCHHHHH
Confidence 789999999999999999999999998 99999999999999999 677777666654
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.71 E-value=1.6e-16 Score=138.70 Aligned_cols=111 Identities=31% Similarity=0.356 Sum_probs=99.8
Q ss_pred CCCCCCCCCCeeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCccccc
Q 025173 69 STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148 (256)
Q Consensus 69 g~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~ 148 (256)
|.+|. ++|.++|||++|+|+++|+++++|++||+|+...
T Consensus 14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~--------------------------------------- 52 (277)
T cd08255 14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG--------------------------------------- 52 (277)
T ss_pred cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC---------------------------------------
Confidence 55554 5889999999999999999999999999998531
Q ss_pred CCCceeeccccccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH
Q 025173 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRI 228 (256)
Q Consensus 149 ~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla 228 (256)
.|++|+.++.+.++++|+++++++++.+ +.+.|||+++ ...++++|++|+|+|+|++|++++++|
T Consensus 53 -------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a 117 (277)
T cd08255 53 -------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLA 117 (277)
T ss_pred -------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence 6899999999999999999999999888 7899999986 578999999999999899999999999
Q ss_pred HHcCCCc
Q 025173 229 HLKFTRH 235 (256)
Q Consensus 229 ~~~G~~~ 235 (256)
+.+|.++
T Consensus 118 ~~~g~~~ 124 (277)
T cd08255 118 KAAGARE 124 (277)
T ss_pred HHcCCCc
Confidence 9999873
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.60 E-value=6.8e-14 Score=121.49 Aligned_cols=154 Identities=25% Similarity=0.259 Sum_probs=114.2
Q ss_pred EEeecC-CCCCCeEEEEEeeeecChhhHHhHcCCCCCCCCCCeeeee----eeeEEEEEccCCCcccCCCCEEeeecccC
Q 025173 38 EEIEVD-PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH----EAVGVVESVGGGVEEVREGDLVLPVFQGD 112 (256)
Q Consensus 38 ~~~~~p-~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~~~G~----e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~ 112 (256)
.+.+.+ ++++++||||.+|.+..|.....+....+...-.|+.+|. .++|+|++. ...++++||.|....
T Consensus 27 ~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~~--- 101 (343)
T KOG1196|consen 27 TTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGIV--- 101 (343)
T ss_pred eeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEec---
Confidence 344433 4689999999999999887665444333322223444443 689999994 556899999997543
Q ss_pred CCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCc--EEEcC--CCCChhhhh-
Q 025173 113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH--VVKIT--PDIPLDIAC- 187 (256)
Q Consensus 113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~--~~~~p--~~l~~~~aa- 187 (256)
+|.||.+++.+. .++++ .++++....
T Consensus 102 -------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg 132 (343)
T KOG1196|consen 102 -------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLG 132 (343)
T ss_pred -------------------------------------------------cceEEEEecCcchhcccCCCCCccCHhhhhh
Confidence 699999997643 34443 455554433
Q ss_pred hchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 188 LLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
.+..+..|||.++.+....++|++|+|.|| |++|+++.|+||.+|.+ +|.+...+|+.
T Consensus 133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~--------VVGsaGS~EKv 191 (343)
T KOG1196|consen 133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCY--------VVGSAGSKEKV 191 (343)
T ss_pred ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCE--------EEEecCChhhh
Confidence 456789999999999999999999999998 99999999999999997 56666666653
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.50 E-value=4.6e-14 Score=139.02 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=119.4
Q ss_pred cEEEEeecC---CCCCCeEEEEEeeeecChhhHHhHcCCCCCC------CCCCeeeeeeeeEEEEEccCCCcccCCCCEE
Q 025173 35 LVMEEIEVD---PPKAGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV 105 (256)
Q Consensus 35 l~~~~~~~p---~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~------~~~p~~~G~e~vG~Vv~vG~~v~~~~vGd~V 105 (256)
+++.+-|.. +..++.=+--|.|+.||+.|++.-.|..+.. ....+++|.|++|+- +-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEE
Confidence 455554443 2357778899999999999999999988661 122478999999984 459999
Q ss_pred eeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccccccceeeeEEecCCcEEEcCCCCChhh
Q 025173 106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI 185 (256)
Q Consensus 106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~aey~~v~~~~~~~~p~~l~~~~ 185 (256)
++..... ++++-+.++.+++|.+|+++..++
T Consensus 1499 M~mvpAk-------------------------------------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPAK-------------------------------------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeeehh-------------------------------------------------hhhhhhhcchhhhhhCCcccchhh
Confidence 8765421 688899999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Q 025173 186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFG-LGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 186 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-aG~vG~~aiqla~~~G~~ 234 (256)
|++++|.+.|+|+|+..+.+.++||+|||++ +|++|++||.+|.+.|.+
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~ 1579 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCT 1579 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCE
Confidence 9999999999999999999999999999995 599999999999999999
No 128
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.90 E-value=1.4e-05 Score=74.51 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=75.4
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVL 158 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~ 158 (256)
..-|.|+++.+.+++.+++. +|++.+.. |++|.+| ++.|.+... .|...++
T Consensus 88 ~~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~---------------- 138 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER---------------- 138 (417)
T ss_pred hcCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH----------------
Confidence 34688999999999888766 55555555 8899888 444544433 3333333
Q ss_pred cccceeeeEEecCCcEEE---c-CCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 159 NVSSFTEYTVVDVTHVVK---I-TPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 159 ~~g~~aey~~v~~~~~~~---~-p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|++++.++. .+.. + +..+|...+|. ....+..+..++++|+|+|+|.+|..+++.++..|+.
T Consensus 139 ---lf~~a~~~~k-~vr~~t~i~~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~ 205 (417)
T TIGR01035 139 ---LFQKAFSVGK-RVRTETDISAGAVSISSAAV---------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG 205 (417)
T ss_pred ---HHHHHHHHhh-hhhhhcCCCCCCcCHHHHHH---------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence 8999888865 3332 2 22333332221 1112334446789999999999999999999999866
Q ss_pred c
Q 025173 235 H 235 (256)
Q Consensus 235 ~ 235 (256)
.
T Consensus 206 ~ 206 (417)
T TIGR01035 206 K 206 (417)
T ss_pred E
Confidence 4
No 129
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.46 E-value=0.0048 Score=58.93 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=27.8
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+..++++|+|+|+|.+|+++++.|+.+|++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~ 190 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAI 190 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence 356899999999999999999999999996
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.52 E-value=0.03 Score=52.24 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.2
Q ss_pred HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 196 GLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 196 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.++.+..++ -+|++|+|+|+|.+|+.+++.++..|++
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ 227 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR 227 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 45566665554 6899999999999999999999999997
No 131
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.01 E-value=0.079 Score=45.91 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=41.4
Q ss_pred ceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 162 SFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 162 ~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+|.+|.. +...++.+++++++..+.. +.... .+..+. ..+.++++||-+|+|. |.+++.+++ .|+.+
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~ 144 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTH-PTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKK 144 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCC-HHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCe
Confidence 4666644 6677888888887765542 11111 122121 2257899999999987 888876655 56654
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.89 E-value=0.016 Score=51.93 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=45.5
Q ss_pred cEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCC----CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 173 HVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEV----EEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 173 ~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~----~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
..+++|+.+..+.++... +.+.++.++ +.+.. -++.+|+|+|+|.+|..+++.++..|+..
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~ 204 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAE 204 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCE
Confidence 456778888888777654 555666654 33332 47899999999999999999999888763
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.76 E-value=0.12 Score=48.45 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 194 STGLGAAWKVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 194 ~ta~~~l~~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...|.++.+..++. .|++|+|+|.|.+|..+++.++.+|++
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ 237 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR 237 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 34566665554554 899999999999999999999999997
No 134
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.85 E-value=0.13 Score=40.30 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
-++.+++|+|+|++|.+++..+...|++++.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~ 40 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEIT 40 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 3589999999999999999999999998533
No 135
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.69 E-value=0.12 Score=50.09 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=27.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..++|++|+|+|+|+.|+++++.++..|++
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~ 162 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHA 162 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence 467899999999999999999999999987
No 136
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.41 E-value=0.15 Score=48.83 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.++++|+|+|+|.+|++++++|+.+|+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~ 189 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAI 189 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 4679999999999999999999999997
No 137
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=93.37 E-value=0.085 Score=28.39 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=15.7
Q ss_pred ceeEEEecCCCCcEEEEeecCCC
Q 025173 23 CRAAISRIPGKPLVMEEIEVDPP 45 (256)
Q Consensus 23 ~ka~~~~~~g~~l~~~~~~~p~~ 45 (256)
|||++++++++ .+++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999998 99999998865
No 138
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.30 E-value=0.21 Score=46.58 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++.++.+..+ ...|++|+|+|.|.+|+.+++.++..|++
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ 220 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR 220 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE
Confidence 4555555544 46899999999999999999999999998
No 139
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.67 E-value=0.19 Score=40.86 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=28.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
.-+|+|+|+|.+|+.|+++++.+|++ .+..++..+..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~--------v~~~d~~~~~~ 56 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAE--------VVVPDERPERL 56 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-E--------EEEEESSHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCE--------EEeccCCHHHH
Confidence 36799999999999999999999999 45555554443
No 140
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.63 E-value=0.92 Score=40.43 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=25.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|+|.|.+|+.+++.++.+|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~ 177 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGAN 177 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence 689999999999999999999999986
No 141
>PLN02494 adenosylhomocysteinase
Probab=91.31 E-value=0.48 Score=44.93 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=32.8
Q ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 197 LGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 197 ~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.++.+..++ -.|++|+|+|.|.+|..+++.++..|++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~ 279 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR 279 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 5566666554 6799999999999999999999999997
No 142
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=91.15 E-value=0.41 Score=44.87 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=64.4
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeecccCCCCCcccCCCCCCCCCcCccCCCCCCCCCCCcccccCCCceeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVL 158 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~ 158 (256)
..-|+|+++-+.+++.+++..-+|+. .. |++|.. .+..|..... .|...++
T Consensus 90 ~~~g~ea~~hl~~V~~GldS~V~GE~-----qI-lgQvk~----a~~~a~~~g~---~g~~l~~---------------- 140 (423)
T PRK00045 90 VHEGEEAVRHLFRVASGLDSMVLGEP-----QI-LGQVKD----AYALAQEAGT---VGTILNR---------------- 140 (423)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhcCCh-----HH-HHHHHH----HHHHHHHcCC---chHHHHH----------------
Confidence 34699999999999998776444443 22 444431 1122211111 1111111
Q ss_pred cccceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 159 NVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVA---EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 159 ~~g~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.|++.+.++ +.+..+.+ ....+.+.+++++.... .-.++++|+|+|+|.+|.++++.++..|+..
T Consensus 141 ---lf~~a~~~~--------k~v~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~ 208 (423)
T PRK00045 141 ---LFQKAFSVA--------KRVRTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRK 208 (423)
T ss_pred ---HHHHHHHHH--------hhHhhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCe
Confidence 555544443 32222222 11223344455442221 1257899999999999999999999999853
No 143
>PRK08324 short chain dehydrogenase; Validated
Probab=90.97 E-value=0.28 Score=48.80 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=44.0
Q ss_pred ceeeeEEecCCcEEEcCCCCChhhhhhchhhHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 162 SFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 162 ~~aey~~v~~~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++++|..+++..++.+ +.++.+++..-.. ......+|+++||+|+ |++|...++.+...|++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~ 448 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGAC 448 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCE
Confidence 5667777777777766 6666666642100 0122346899999997 99999999999999986
No 144
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.86 E-value=0.36 Score=44.41 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++.+|+|+|+|.+|+.+++.++.+|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~ 192 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGAT 192 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCe
Confidence 345699999999999999999999996
No 145
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=90.05 E-value=0.62 Score=40.62 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.4
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 203 VAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 203 ~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+++|++||.+|+|. |..++++++..|..
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~ 102 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPT 102 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCC
Confidence 46789999999999988 98888888887764
No 146
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.98 E-value=1.5 Score=41.61 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=31.1
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 197 LGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 197 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.++.+..+ .-.|++|+|+|.|.+|..+++.++..|++
T Consensus 241 ~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ 279 (476)
T PTZ00075 241 IDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGAR 279 (476)
T ss_pred HHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 344555443 34799999999999999999999999997
No 147
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.90 E-value=1.5 Score=35.81 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=34.9
Q ss_pred hhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCC
Q 025173 186 ACLLSCGVSTGLGAAWKVAEVEEGSTVAIFGLGA-VGLSVLIRIHLKFTR 234 (256)
Q Consensus 186 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~-vG~~aiqla~~~G~~ 234 (256)
....+|....+...+.....--.|.+|+|+|+|. +|..+++.++..|++
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~ 70 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNAT 70 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCE
Confidence 3555665555555333333345789999999986 599899999999986
No 148
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.12 E-value=1.4 Score=39.07 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=26.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.+.+|+|+|+|++|.+++..+...|+..+..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I 156 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTI 156 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 4688999999999999999999999874333
No 149
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.58 E-value=2.3 Score=35.56 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=25.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|+|.|.+|..+++.+...|++
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~ 53 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAK 53 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3578999999999999999999999998
No 150
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.07 E-value=2.2 Score=37.57 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=27.7
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.+...+++++|+|+|+.+.+++.-++..|+.++..
T Consensus 117 ~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i 151 (272)
T PRK12550 117 YQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTI 151 (272)
T ss_pred cCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence 34455679999999999999999998999874333
No 151
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.68 E-value=2.2 Score=35.21 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++.+++|+|+ |.+|..+++.+...|++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~ 54 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGAR 54 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence 5789999997 99999888888777865
No 152
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.14 E-value=1.2 Score=43.39 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 202 KVAEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 202 ~~~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
...+.+.|++|||+|+ |.+|...++.+...|++
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~ 106 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFR 106 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCe
Confidence 4556778999999998 99999999988888887
No 153
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.09 E-value=1.2 Score=34.46 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEe
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILM 246 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~ 246 (256)
..+|+|.|+|++|...+..+-..|..+...+..+.+-.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 46899999999999999999999998877777776543
No 154
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=85.92 E-value=2.2 Score=37.84 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
..+|++++|.|+|+.+.+++.-++..|..+
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~ 152 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKR 152 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence 346899999999999999999999999864
No 155
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.86 E-value=3.6 Score=29.25 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEe
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILM 246 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~ 246 (256)
-.+.+++|+|+|.+|..+++.+...+...+....+|+++.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~i~ 60 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDILVT 60 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEEE
Confidence 4578999999999999999999988766555555555443
No 156
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.80 E-value=2.6 Score=37.08 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
..+.+++|+|+|++|.+++..+...|..+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~ 149 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAE 149 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCE
Confidence 45678999999999999999999999653
No 157
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.78 E-value=2.7 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=31.8
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhh
Q 025173 196 GLGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEM 252 (256)
Q Consensus 196 a~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~ 252 (256)
.+.++.+..+ .-.|.+++|.|=|-+|.-.++.++.+|++ |.+.|.++.
T Consensus 9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~---------V~V~e~DPi 57 (162)
T PF00670_consen 9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGAR---------VTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-E---------EEEE-SSHH
T ss_pred HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCE---------EEEEECChH
Confidence 3444555544 45789999999999999999999999999 555555543
No 158
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.61 E-value=1.3 Score=37.14 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..+|+|+|+|++|..+++.+...|..+...+.++.+-.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~s 59 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLS 59 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEccc
Confidence 577999999999999999999999988777777765433
No 159
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.60 E-value=1.1 Score=38.74 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
+.+|+|.|+|++|..+++.+...|..+...+..+.|-.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s 62 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLS 62 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 367999999999999999999999998777777766544
No 160
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.00 E-value=1.8 Score=35.37 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|.|+|.|.+|...++.++..|.+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~ 61 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMR 61 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-E
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCce
Confidence 3689999999999999999999999997
No 161
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=84.91 E-value=2.8 Score=38.83 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 189 LSCGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+..+..+.+..+.+..++++|++||-+|+| .|.++..+++..|++
T Consensus 148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~ 192 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVS 192 (383)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCE
Confidence 344445555556778889999999999984 566778888877766
No 162
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=84.67 E-value=2.6 Score=37.37 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcccee
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI 239 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~ 239 (256)
..+.+++|+|+|+.+.+++.-+...|+..+..+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 347899999999999998888888998753333
No 163
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=84.52 E-value=1.7 Score=38.44 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=26.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcccee
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHI 239 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~ 239 (256)
.+.+++|+|+|+.+.+++.-+...|+.++..+
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEE
Confidence 57899999999999999999999998754333
No 164
>PRK08328 hypothetical protein; Provisional
Probab=84.47 E-value=1.3 Score=38.04 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
+.+|+|+|+|++|..+++.+-..|..+...+..+.+-
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 4679999999999999999999999876666666543
No 165
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.38 E-value=1.7 Score=38.32 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.+++|+|+ |++|...++.+...|++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~ 66 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGAT 66 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence 3578999998 99999999888888887
No 166
>PLN02780 ketoreductase/ oxidoreductase
Probab=84.25 E-value=1.8 Score=38.86 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.|.+++|+|+ +++|...++.+...|++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~ 79 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLN 79 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCC
Confidence 5899999998 99999888877778887
No 167
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=83.12 E-value=4.1 Score=37.93 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=40.7
Q ss_pred hhhhhhchhhHHHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhh
Q 025173 183 LDIACLLSCGVSTGLGAAWKVAEV-EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQE 251 (256)
Q Consensus 183 ~~~aa~l~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~ 251 (256)
.++|-...+.+.+- . +.+..+. -.|.+|.|.|-|.+|..+++++...|++ +|.+++...
T Consensus 182 r~~aTg~Gv~~~~~-~-a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAk--------vva~sds~g 241 (411)
T COG0334 182 RSEATGYGVFYAIR-E-ALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAK--------VVAVSDSKG 241 (411)
T ss_pred CCcccceehHHHHH-H-HHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCE--------EEEEEcCCC
Confidence 34444444444433 2 2334444 4899999999999999999999989999 666665543
No 168
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.05 E-value=3.9 Score=35.74 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...+.+++|+|+|++|.+++..+...|.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~ 142 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCN 142 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCE
Confidence 34578999999999999988888888865
No 169
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.80 E-value=2.1 Score=35.91 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..+|+|+|+|++|...++.+-..|..+...+.++.+-.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~s 59 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPS 59 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccc
Confidence 467999999999999999999999987777777765443
No 170
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.73 E-value=5.2 Score=35.46 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|++|+|+|.|.+|..+++.++..|++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~ 176 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGAR 176 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999986
No 171
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.70 E-value=2.1 Score=37.10 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|..+++.+...|..+...+..+.|-.++
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN 71 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSN 71 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcch
Confidence 4689999999999999999999999888888777765443
No 172
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=82.64 E-value=4.5 Score=38.30 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|.|.|.+|..+++.+...|++
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Gak 262 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGAK 262 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3688999999999999999999999999
No 173
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.63 E-value=4.1 Score=34.76 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecce
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPT 242 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~ 242 (256)
-.+.+|+|+|+|+.|..++..+...|.. ++..+.++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4568999999999999999888888987 65555554
No 174
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=82.55 E-value=5.2 Score=33.99 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechh
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQ 250 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~ 250 (256)
-.|.+|+|.|-|.+|..+++++...|++ +|.+++.+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~--------vV~vsD~~ 56 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGK--------VLAVSDPD 56 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCE--------EEEEEcCC
Confidence 3588999999999999999999999988 55555544
No 175
>PRK08223 hypothetical protein; Validated
Probab=82.40 E-value=1.5 Score=38.98 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|..+++.+-.+|..+...+..|.|-.++
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SN 66 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRN 66 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhc
Confidence 5679999999999999999999999977777777655443
No 176
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=82.16 E-value=5.3 Score=34.86 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-+|.+|+|.|-|.+|+.+++++..+|++
T Consensus 36 l~g~~vaIqGfGnVG~~~a~~L~e~Gak 63 (254)
T cd05313 36 LKGKRVAISGSGNVAQYAAEKLLELGAK 63 (254)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3688999999999999999999999999
No 177
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.12 E-value=2.2 Score=36.38 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=33.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..+|+|.|+|++|..++..+-..|..+...+..+.+-.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s 59 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELS 59 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCc
Confidence 468999999999999999999999998888877776444
No 178
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=81.68 E-value=2.7 Score=36.48 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
...|-.+++|.|+|.+++..+++|+.+|++.+
T Consensus 96 ~~~p~~~L~IfGaG~va~~la~la~~lGf~V~ 127 (246)
T TIGR02964 96 EAPPAPHVVLFGAGHVGRALVRALAPLPCRVT 127 (246)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHHhcCCCEEE
Confidence 35677899999999999999999999999943
No 179
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.65 E-value=2 Score=39.05 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=31.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
+.+|+|+|+|++|..+++.+-.+|..+...+.+|.|-
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 4679999999999999999999999877777777653
No 180
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.59 E-value=3.5 Score=36.56 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.+.+++|+|+|++|.+++..+...|++++..
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I 155 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITI 155 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence 5788999999999999888888889874433
No 181
>PRK06196 oxidoreductase; Provisional
Probab=81.38 E-value=2.5 Score=37.53 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.+|||+|+ |++|..+++.+...|++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~ 52 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAH 52 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 4679999998 99999988888888987
No 182
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.11 E-value=2.4 Score=35.82 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
..+|+|+|+|++|...++.+-..|..+...+..+.|-
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 4679999999999999999999999877777776543
No 183
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.09 E-value=2.5 Score=37.25 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~ 249 (256)
.+.+|+|+|+|++|..++..+-..|..+...+..+.+..++.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl 70 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT 70 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc
Confidence 356899999999999999999999988888888777665544
No 184
>PRK06153 hypothetical protein; Provisional
Probab=80.87 E-value=1.8 Score=40.15 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
.+.+|+|+|+|++|..+++.+-..|..+.+.+..|.|-.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~S 214 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQH 214 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccc
Confidence 3578999999999999999999999998888888876544
No 185
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.82 E-value=2.2 Score=42.20 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+++|+|+|+|+.|+.++..++..|++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~ 352 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA 352 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence 3588999999999999999999999988
No 186
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.35 E-value=6.4 Score=30.76 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
..+.+|+|+|+|.+|...++.+...|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~ 43 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA 43 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 457899999999999999988888763
No 187
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=80.19 E-value=2.9 Score=39.63 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+++|+|+|+|+.|+.++..++..|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~ 166 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ 166 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 688999999999999999999999987
No 188
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=79.98 E-value=5.6 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
-.+.+|+|+|+|.+|.+++..+...|+..+.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~ 209 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIM 209 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEE
Confidence 4578999999999999999999999987433
No 189
>PRK14030 glutamate dehydrogenase; Provisional
Probab=79.97 E-value=6.5 Score=37.19 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|.|.|.+|..+++++...|++
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~Gak 253 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGAK 253 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3589999999999999999999999999
No 190
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=79.93 E-value=4.5 Score=35.03 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|.|.|.+|..+++++...|++
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga~ 57 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGAK 57 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 3689999999999999999999999988
No 191
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=79.87 E-value=3.8 Score=36.13 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=23.5
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.+.+++++|++||-+|+| -|.+++.+|+..|++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~ 87 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCH 87 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH--E
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcE
Confidence 5688999999999999987 567777888888887
No 192
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=79.80 E-value=2.8 Score=38.40 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=34.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|..+++.+-..|..+...+..+.|-.++
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sN 67 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSN 67 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccc
Confidence 4689999999999999999999999988888887765543
No 193
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.70 E-value=4.1 Score=28.34 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.6
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+|+|+|+|.+|+-++..++..|...+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt 26 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT 26 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE
Confidence 58999999999999999999997743
No 194
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.38 E-value=2.5 Score=41.69 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=35.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
...+|||+|+|++|-.+++.+-..|.++...+..+.|-.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SN 377 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSN 377 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCc
Confidence 36789999999999999999999999988888888765543
No 195
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.15 E-value=2.2 Score=36.96 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechh
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQ 250 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~ 250 (256)
+..+|+|.|.|++|..++..+-..|..+...|..|-|.++..+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N 71 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN 71 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 3578999999999999999999999998888888888777554
No 196
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.80 E-value=3 Score=38.46 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=34.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
...+|+|+|+|++|..+++.+...|..+...+..+.|-.++
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sN 80 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN 80 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcccc
Confidence 35679999999999999999999999887887777764443
No 197
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.74 E-value=2.7 Score=38.26 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
..+|+|+|+|++|..+++.+-..|..+...+..+.|
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 467999999999999999999999987666666653
No 198
>PRK14031 glutamate dehydrogenase; Provisional
Probab=78.66 E-value=7.4 Score=36.79 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=26.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|.|.|.+|..+++++...|++
T Consensus 226 l~g~rVaVQGfGNVG~~aA~~L~e~GAk 253 (444)
T PRK14031 226 LKGKVCLVSGSGNVAQYTAEKVLELGGK 253 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3689999999999999999999999999
No 199
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.50 E-value=2.2 Score=31.60 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=24.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|||+|+|.+|..-++.+...|++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~ 32 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAK 32 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 478999999999999999999999987
No 200
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=78.49 E-value=10 Score=33.43 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
..++++||-+|+|. |.+++.+++ .|+.+++.
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~a 187 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVG 187 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEE
Confidence 46789999999987 888877765 46654333
No 201
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=78.15 E-value=4.5 Score=32.47 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.|.+|+|+|+|.+|..-++.+...|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V 39 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFV 39 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEE
Confidence 4789999999999999888888888884
No 202
>PRK07411 hypothetical protein; Validated
Probab=77.94 E-value=3 Score=38.70 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=34.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV 249 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~ 249 (256)
..+|+|+|+|++|..+++.+-..|..+...+..+.|-.++.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL 78 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL 78 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc
Confidence 45799999999999999999999999888888887655543
No 203
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.10 E-value=3.1 Score=38.32 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=32.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
.+.+|+|+|+|++|..++..+...|..+...+..+.+-
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVD 171 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 45689999999999999999999999887777777653
No 204
>PLN02477 glutamate dehydrogenase
Probab=76.63 E-value=8.6 Score=36.00 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|+|.|.|.+|..+++++...|++
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~Gak 231 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKGGK 231 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 688999999999999999999999998
No 205
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.50 E-value=3.7 Score=40.55 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+++|+|+|+|+.|+.++..++..|+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~ 335 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ 335 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc
Confidence 489999999999999999999999987
No 206
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=76.38 E-value=6.3 Score=34.97 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILP 241 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~ 241 (256)
.+.+++|+|+|+.+.+++..+...|+.++....|
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 5679999999999988777666778875444333
No 207
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=76.23 E-value=3.5 Score=38.21 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|..++..+-..|..+...+..+.|-.++
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sN 81 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESN 81 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcc
Confidence 4579999999999999999999999987777777765544
No 208
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.69 E-value=4.2 Score=39.35 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+++|+|+|++|.+++..+...|++
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~ 404 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGAR 404 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCE
Confidence 467899999999999999999999985
No 209
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.65 E-value=5.1 Score=39.74 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.+++|+|+|+|+.|+.++..+...|.+
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~ 218 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHD 218 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCc
Confidence 4578999999999999999999999987
No 210
>PRK12831 putative oxidoreductase; Provisional
Probab=73.92 E-value=5 Score=38.02 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...+.+|+|+|+|+.|+.++..++..|.+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~ 165 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYD 165 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCe
Confidence 35688999999999999999999999987
No 211
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=73.50 E-value=9.2 Score=35.74 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecceeeEeechh
Q 025173 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPTLILMSEVQ 250 (256)
Q Consensus 196 a~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~~v~~~~~~ 250 (256)
.+.++.-..+--...+|++.|+|+.|..++.+.+..|.+ +++.+.+..+...+.+
T Consensus 186 llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~ 242 (432)
T COG0281 186 LLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGRE 242 (432)
T ss_pred HHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCc
Confidence 344443333334566788889999999999999999998 6666666655555443
No 212
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.12 E-value=4.3 Score=39.03 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
.+..+|+|+|||..|++|+.-+...|...+|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~V 43 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLV 43 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEE
Confidence 4456799999999999999999999999433
No 213
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=72.80 E-value=4.3 Score=33.90 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
..+|+|+|+|++|.-.++.+-.+|..+...+.++.+-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 4679999999999999999999999977776666543
No 214
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=72.72 E-value=4.8 Score=27.40 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.5
Q ss_pred EECCCHHHHHHHHHHHHcCCC
Q 025173 214 IFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 214 I~GaG~vG~~aiqla~~~G~~ 234 (256)
|+|+|..|+.+...++..|.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~ 21 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR 21 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE
T ss_pred CEeeCHHHHHHHHHHHHCCCc
Confidence 689999999999988888776
No 215
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=72.58 E-value=6.3 Score=37.32 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.+.+|+|+|+|+.|+.++..++..|.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~ 168 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHK 168 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999987
No 216
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=72.21 E-value=7.6 Score=36.27 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=23.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+++++|.|+ |++|...++.+...|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~ 204 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAK 204 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 4689999998 99999998888888887
No 217
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=71.68 E-value=6.9 Score=29.13 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=18.8
Q ss_pred eEEEEEccCCCc----ccCCCCEEeee
Q 025173 86 VGVVESVGGGVE----EVREGDLVLPV 108 (256)
Q Consensus 86 vG~Vv~vG~~v~----~~~vGd~V~~~ 108 (256)
-|+|+++|+... .+++||+|+..
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 599999998753 49999999843
No 218
>PRK09414 glutamate dehydrogenase; Provisional
Probab=71.63 E-value=14 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|+|.|-|.+|..+++++...|++
T Consensus 230 l~g~rVaIqGfGnVG~~~A~~L~~~Gak 257 (445)
T PRK09414 230 FEGKRVVVSGSGNVAIYAIEKAQQLGAK 257 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 3689999999999999999999999998
No 219
>PLN02686 cinnamoyl-CoA reductase
Probab=70.99 E-value=6.6 Score=35.84 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
..+.+|||+|+ |.+|...++.+...|++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~ 79 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYS 79 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCE
Confidence 45789999998 99999999999888987
No 220
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=70.54 E-value=12 Score=34.00 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceeccee
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTL 243 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~ 243 (256)
-.+.+|||+|+|-+|.++++.+...|+..+....++.
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4678999999999999999999999987655555553
No 221
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=70.44 E-value=5.8 Score=35.53 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=31.7
Q ss_pred CCCCEEEEECC-CHHHHH-HHHHHHHcCCCccceecceeeEeechhhhhhc
Q 025173 207 EEGSTVAIFGL-GAVGLS-VLIRIHLKFTRHTPHILPTLILMSEVQEMYSQ 255 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~-aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~~ 255 (256)
+.|++.+|.|+ .++|.. |-+||| +|.. ++.++++++++++
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~n--------vvLIsRt~~KL~~ 88 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFN--------VVLISRTQEKLEA 88 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCE--------EEEEeCCHHHHHH
Confidence 45789999999 799966 677777 8888 6777887777764
No 222
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=70.41 E-value=4.9 Score=33.53 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=30.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
..+|+|+|+|++|.-.++.+-..|..+...+..+.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 367999999999999999999999997767666654
No 223
>PRK13984 putative oxidoreductase; Provisional
Probab=70.35 E-value=6.8 Score=38.31 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+++|+|+|+|+.|+.++..++..|.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~ 308 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYE 308 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCe
Confidence 46789999999999999999999999987
No 224
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.26 E-value=3.8 Score=38.37 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=29.3
Q ss_pred HhcCCCCCCEEE----EECC-CHHHHHHHHHHHHcCCC
Q 025173 202 KVAEVEEGSTVA----IFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 202 ~~~~~~~g~~Vl----I~Ga-G~vG~~aiqla~~~G~~ 234 (256)
...+.++|+.+| |+|+ |++|.+++|+++..|+.
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~ 64 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYD 64 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCe
Confidence 567778999988 8876 99999999999999998
No 225
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=70.15 E-value=10 Score=31.34 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=26.2
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
....+.++++|+-+|+|. |.+++++|+..+.
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~ 64 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGE 64 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCC
Confidence 456788999999999988 9999999988753
No 226
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=70.07 E-value=6 Score=29.09 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=18.9
Q ss_pred eeEEEEEccCCCc---------ccCCCCEEeee
Q 025173 85 AVGVVESVGGGVE---------EVREGDLVLPV 108 (256)
Q Consensus 85 ~vG~Vv~vG~~v~---------~~~vGd~V~~~ 108 (256)
..|+|+++|+... .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 3699999998542 49999999853
No 227
>PRK06484 short chain dehydrogenase; Validated
Probab=69.91 E-value=7.2 Score=37.07 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=24.4
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
..|.++||+|+ +++|+..++.+...|++
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~ 295 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDR 295 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence 35788999998 99999999888888987
No 228
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=69.26 E-value=5.5 Score=41.30 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..|.+|+|+|+|+.|+.|+..+...|+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~ 331 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP 331 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe
Confidence 3589999999999999999999999988
No 229
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=69.20 E-value=9.5 Score=32.60 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|.|.|.+|..+++++...|++
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~ 56 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAK 56 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999988
No 230
>PRK04148 hypothetical protein; Provisional
Probab=69.09 E-value=9.6 Score=29.94 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=21.5
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
....++.+++++|.| .|...++.+...|..
T Consensus 12 ~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ 41 (134)
T PRK04148 12 YEKGKNKKIVELGIG-FYFKVAKKLKESGFD 41 (134)
T ss_pred cccccCCEEEEEEec-CCHHHHHHHHHCCCE
Confidence 334467899999999 887555555577877
No 231
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=68.66 E-value=9.3 Score=27.26 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G 232 (256)
+|.|+|+|.+|.+.++-+...|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g 22 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASG 22 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 5778899999999888888888
No 232
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=68.38 E-value=15 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=24.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+++|+|+|++|.+++..+...|+.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~~ 357 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGAE 357 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCE
Confidence 567899999999999999999888985
No 233
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=68.20 E-value=4.7 Score=37.07 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=21.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
-.|+|+|+|+.|++++..+...|.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v 44 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRI 44 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEE
Confidence 35899999999999888888888763
No 234
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=67.98 E-value=7 Score=38.93 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.++.-+|+|+|+|..|++++..++..|.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~ 106 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFD 106 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCe
Confidence 36677899999999999999999999987
No 235
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=67.84 E-value=7.7 Score=28.37 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=19.2
Q ss_pred eeEEEEEccCCC---------cccCCCCEEeee
Q 025173 85 AVGVVESVGGGV---------EEVREGDLVLPV 108 (256)
Q Consensus 85 ~vG~Vv~vG~~v---------~~~~vGd~V~~~ 108 (256)
..|+|+++|+.. ..+++||+|+..
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP 67 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence 479999999873 359999999843
No 236
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=67.60 E-value=25 Score=31.23 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhh
Q 025173 196 GLGAAWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEM 252 (256)
Q Consensus 196 a~~~l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~ 252 (256)
++..+.+..++++|++||=+|+|- |.+++..|+.-|++ ++.++-..+.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~--------V~GvTlS~~Q 107 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVT--------VVGVTLSEEQ 107 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCE--------EEEeeCCHHH
Confidence 344567899999999999999854 55566777777777 5666655444
No 237
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.60 E-value=13 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=35.2
Q ss_pred hchhhHHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCcc
Q 025173 188 LLSCGVSTGLGAAWKVAEV-EEGSTVAIFGLGA-VGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG~-vG~~aiqla~~~G~~~~ 236 (256)
.+||.....+. +.+..++ -.|.+|+|+|.|. +|.-+..++...|+..+
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence 45665554444 3455553 3689999999965 99999999999998843
No 238
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.33 E-value=7.2 Score=36.90 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=25.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
..+.+|+|+|+|.+|+.++.+++..|...+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~ 43 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVT 43 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 357799999999999999999999998743
No 239
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=67.32 E-value=83 Score=28.41 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.3
Q ss_pred EEEEEccCCCcccCCCCEEeeecccC
Q 025173 87 GVVESVGGGVEEVREGDLVLPVFQGD 112 (256)
Q Consensus 87 G~Vv~vG~~v~~~~vGd~V~~~~~~~ 112 (256)
++|++ +.+.++.+|.||.+++.+.
T Consensus 39 A~Vve--S~~~~i~vGerlyGy~P~a 62 (314)
T PF11017_consen 39 ATVVE--SRHPGIAVGERLYGYFPMA 62 (314)
T ss_pred EEEEe--eCCCCccCccEEEeecccc
Confidence 67777 7788899999999877653
No 240
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=67.32 E-value=9.5 Score=36.36 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+.+|+|+|+|+.|+.++..++..|..
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~ 168 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHT 168 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCe
Confidence 4568999999999999999999999887
No 241
>PRK07985 oxidoreductase; Provisional
Probab=66.68 E-value=8.7 Score=33.75 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.++||+|+ |++|...++.+...|++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~ 75 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGAD 75 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCE
Confidence 5678999998 99999999888888988
No 242
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=66.60 E-value=16 Score=31.85 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc----CC------CccceecceeeEeech
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLK----FT------RHTPHILPTLILMSEV 249 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~----G~------~~~~~~~~~~v~~~~~ 249 (256)
--...+|++.|+|..|.....+.... |. +++..+........++
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r 75 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR 75 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC
Confidence 34577899999999998888888777 88 6666666665555544
No 243
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.54 E-value=7.8 Score=32.95 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=24.9
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcc
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~ 236 (256)
.+.++||+|+ |++|...++.+...|++.+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~ 43 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADII 43 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 4789999998 9999999998888898743
No 244
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=66.47 E-value=8.6 Score=40.13 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+++|+|+|+|+.|+.|+..++..|.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~ 564 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHP 564 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCe
Confidence 4578999999999999999999999987
No 245
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=66.44 E-value=11 Score=27.39 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCccceecceeeEeechhhhh
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHL-KFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~-~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
|+++||-+|+|. |.+++.+++. .+++ ++.++-.++++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~--------v~gvD~s~~~~ 38 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGAR--------VVGVDISPEML 38 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSE--------EEEEESSHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCE--------EEEEeCCHHHH
Confidence 688999999754 7777788884 5555 45555544443
No 246
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=66.44 E-value=15 Score=32.15 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC----------ccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR----------HTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~----------~~~~~~~~~v~~~~~ 249 (256)
...+|++.|+|..|....+++...+.+ +...+........++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r 75 (254)
T cd00762 24 SEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR 75 (254)
T ss_pred hhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC
Confidence 468899999999998888888777665 555666655555544
No 247
>PRK14851 hypothetical protein; Provisional
Probab=66.35 E-value=8 Score=38.61 Aligned_cols=42 Identities=24% Similarity=0.073 Sum_probs=35.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~ 249 (256)
.+.+|+|+|+|++|..++..+-..|..+...+..|.|-.++.
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNL 83 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNV 83 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEeccccc
Confidence 357899999999999999999999999888888887766554
No 248
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=66.27 E-value=7 Score=40.63 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..|.+|+|+|+|+.|+.++..+...|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~ 408 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN 408 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe
Confidence 4688999999999999999999999988
No 249
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=66.14 E-value=4.6 Score=36.84 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
...|||+|+|++|-=|+|++.+.|..+.=.+..|.|-.+
T Consensus 66 ~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~s 104 (427)
T KOG2017|consen 66 NSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELS 104 (427)
T ss_pred CccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehh
Confidence 467999999999999999999999986555666655444
No 250
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.03 E-value=9.7 Score=35.60 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=24.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++.++||+|+ |++|...++.+...|++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~ 236 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAH 236 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCE
Confidence 5789999998 99999999999889987
No 251
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.01 E-value=8.2 Score=33.56 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|+|+|+|+.|+++...+...|.+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~ 50 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLK 50 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCe
Confidence 3589999999999988888888887
No 252
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=65.85 E-value=11 Score=35.48 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+.+|+|+|+|+.|+.++..++..|.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~ 158 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHS 158 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCc
Confidence 3567999999999999999999989987
No 253
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=65.48 E-value=22 Score=31.50 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=31.6
Q ss_pred HhcCCC-CCCEEEEECCCHHHHHHHHHHHHc----CC------CccceecceeeEeech
Q 025173 202 KVAEVE-EGSTVAIFGLGAVGLSVLIRIHLK----FT------RHTPHILPTLILMSEV 249 (256)
Q Consensus 202 ~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~----G~------~~~~~~~~~~v~~~~~ 249 (256)
+..+.+ ...+|++.|+|..|.....++... |. ++...+........++
T Consensus 17 k~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r 75 (279)
T cd05312 17 RITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR 75 (279)
T ss_pred HHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC
Confidence 344433 467889999998888877777665 77 4555666665555543
No 254
>PLN00203 glutamyl-tRNA reductase
Probab=65.36 E-value=18 Score=34.93 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+.+|+|+|+|.+|.++++.+...|...
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~ 292 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTK 292 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCe
Confidence 688999999999999999999888764
No 255
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=64.78 E-value=9 Score=37.15 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=30.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhhh
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYS 254 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~ 254 (256)
++++|.|.|.+|+..++.++..|.. .+.++.++++.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~--------vvvId~d~~~~~ 454 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIP--------LVVIETSRTRVD 454 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCC--------EEEEECCHHHHH
Confidence 7899999999999999999999988 566666655543
No 256
>PLN02928 oxidoreductase family protein
Probab=64.66 E-value=11 Score=34.30 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|..+++.++..|.+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~ 184 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVK 184 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE
Confidence 578999999999999999999999987
No 257
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=64.61 E-value=8.1 Score=34.34 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=32.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..+|||+|+|++|.-+++.+-+.|......+..+.+-.+
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~s 57 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWS 57 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchh
Confidence 467999999999999999999999997777777665443
No 258
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=64.27 E-value=9.7 Score=35.96 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
=.|+|+|+|+.|.++...+...|.+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~ 64 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE 64 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc
Confidence 3599999999999999888888988
No 259
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=64.26 E-value=8.4 Score=37.14 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|+|+|+|+.|+++...+...|.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~ 48 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVP 48 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc
Confidence 3599999999999988888888887
No 260
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=64.00 E-value=11 Score=37.66 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.++||+|+ |++|...++.+...|++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~ 440 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAH 440 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCE
Confidence 4688999998 99999999888888987
No 261
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.98 E-value=9.2 Score=32.59 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.8
Q ss_pred CCCCCEEEEECC-C-HHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGL-G-AVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~Ga-G-~vG~~aiqla~~~G~~ 234 (256)
+..++++||+|+ | ++|...++.+...|++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~ 44 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR 44 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE
Confidence 345789999997 6 7999999999999987
No 262
>PRK06128 oxidoreductase; Provisional
Probab=63.83 E-value=12 Score=32.72 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.++||+|+ |++|...++.+...|++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~ 81 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGAD 81 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCE
Confidence 4689999998 99999988888888987
No 263
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.63 E-value=12 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=19.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.|+.|||+|+ +++|.+.++=...+|+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~ 64 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAK 64 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCe
Confidence 6899999998 79997644444455665
No 264
>PRK06841 short chain dehydrogenase; Provisional
Probab=63.31 E-value=9.7 Score=32.14 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCccceec
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHIL 240 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~~ 240 (256)
++.++||+|+ |.+|...++.+...|++ ++...
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~ 46 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGAR-VALLD 46 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence 4679999998 99999988888888886 34333
No 265
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=63.25 E-value=11 Score=39.40 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|+|+|+.|+.|+..++..|.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~ 562 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP 562 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe
Confidence 467899999999999999999999987
No 266
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=62.19 E-value=13 Score=33.28 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=38.7
Q ss_pred CcEEEcCCCCChhhhhhchhhHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 172 THVVKITPDIPLDIACLLSCGVSTGLGAAWK-VAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 172 ~~~~~~p~~l~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..++++.+++.+ .......|++. +.- ...+++|.+||=+|+|. |.++|..+ ..|+..++++..|-+++.
T Consensus 130 ~~~i~lDPGlAF----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~ 199 (300)
T COG2264 130 ELNIELDPGLAF----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVE 199 (300)
T ss_pred ceEEEEcccccc----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHH
Confidence 455666555533 34444455543 332 23456999999888742 44444433 457876666655544444
No 267
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=61.91 E-value=13 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.2
Q ss_pred eEEEEEccCCCc----ccCCCCEEeee
Q 025173 86 VGVVESVGGGVE----EVREGDLVLPV 108 (256)
Q Consensus 86 vG~Vv~vG~~v~----~~~vGd~V~~~ 108 (256)
.|+|+++|+... .+++||+|+..
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFS 63 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEc
Confidence 689999997532 49999999853
No 268
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.48 E-value=22 Score=30.14 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G 232 (256)
+.....+++|++||=+|+| .|..++-+|+..|
T Consensus 64 m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~ 95 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG 95 (209)
T ss_pred HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC
Confidence 4578899999999999964 5899999999988
No 269
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=61.39 E-value=12 Score=33.87 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
.+.+.+|+|+|+|..|+.++..++..|.+.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~ 45 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVH 45 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEE
Confidence 4567899999999999999998888887633
No 270
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=61.29 E-value=13 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+.|+++...+...|.+
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~ 46 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLK 46 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc
Confidence 489999999999999888888876
No 271
>PRK05855 short chain dehydrogenase; Validated
Probab=61.07 E-value=13 Score=35.34 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.++||+|+ |++|...++.+...|++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~ 341 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAE 341 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCE
Confidence 4578999998 99999988888888887
No 272
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=8.6 Score=34.83 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=30.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV 249 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~ 249 (256)
-+|||+|||++|--.+.-+.++|.+..-.|.-|.+-++..
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNL 80 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNL 80 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccc
Confidence 4599999999999888888889998666666666555543
No 273
>PRK07201 short chain dehydrogenase; Provisional
Probab=61.04 E-value=13 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+.+++|+|+ |++|...++.+...|++
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~ 397 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGAT 397 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 678999998 99999999888888887
No 274
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=60.98 E-value=13 Score=37.39 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|+|+|+.|+.|+..+...|.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~ 456 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD 456 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe
Confidence 578999999999999999999999987
No 275
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=60.76 E-value=13 Score=34.90 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+.+|+|+|+|+.|+.++..+...|.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~ 165 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYD 165 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCe
Confidence 4567899999999999999888888876
No 276
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=60.67 E-value=10 Score=34.29 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhhhcC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMYSQL 256 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~~~l 256 (256)
..+|.|+|.|-+|.-+.++|--+|+. +.+.+-+.+++++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~--------Vtild~n~~rl~~l 207 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGAD--------VTILDLNIDRLRQL 207 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCe--------eEEEecCHHHHhhh
Confidence 34688889999999999999999999 44555555555543
No 277
>PRK06701 short chain dehydrogenase; Provisional
Probab=60.66 E-value=16 Score=32.00 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
-++.++||+|+ |.+|...++.+...|++
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~ 72 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGAD 72 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence 34778999998 99999988888888887
No 278
>PRK06932 glycerate dehydrogenase; Provisional
Probab=60.57 E-value=13 Score=33.31 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...+++++..|.+
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~ 172 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMK 172 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCE
Confidence 478999999999999999999999987
No 279
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=60.53 E-value=15 Score=32.98 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...+++++..|.+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~ 170 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAK 170 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCE
Confidence 588999999999999999999999987
No 280
>PRK12367 short chain dehydrogenase; Provisional
Probab=60.52 E-value=12 Score=32.15 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.+.+++|+|+ |++|...++.+...|++.
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~V 41 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKV 41 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEE
Confidence 3678999998 999999998888888863
No 281
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=60.29 E-value=9.9 Score=32.80 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|..+.+.+-++|......+..+.|-.+.
T Consensus 30 ~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~sn 69 (254)
T COG0476 30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSN 69 (254)
T ss_pred hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccc
Confidence 4679999999999999999999999876666666554443
No 282
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.97 E-value=10 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.+|||.|+ |++|..+++.+...|++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~ 42 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAH 42 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCE
Confidence 5688999998 99999988888778876
No 283
>PTZ00188 adrenodoxin reductase; Provisional
Probab=59.93 E-value=12 Score=36.08 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCHHHHHHHH-HHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLI-RIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiq-la~~~G~~ 234 (256)
....+|+|+|+|+.|+.+++ +++..|..
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~ 65 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVK 65 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCe
Confidence 34678999999999999876 67667765
No 284
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=59.47 E-value=19 Score=33.28 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.1
Q ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 204 AEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+-..+.+|||+|+ |.+|...++.+...|..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~ 86 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYN 86 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence 34456789999998 99999999988888876
No 285
>PRK05854 short chain dehydrogenase; Provisional
Probab=59.45 E-value=12 Score=33.20 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.|.+++|+|+ +++|..+++.+...|++.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~V 41 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEV 41 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 4688999998 899999888888888763
No 286
>PRK06487 glycerate dehydrogenase; Provisional
Probab=59.29 E-value=15 Score=32.97 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=25.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~ 173 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMR 173 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE
Confidence 467999999999999999999999987
No 287
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=59.22 E-value=11 Score=37.31 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.2
Q ss_pred CEEEEECCCHHHHHHHHHHHH-cCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHL-KFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~-~G~~ 234 (256)
-.|+|+|||+.|+++...+.. .|..
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~ 58 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDIT 58 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCc
Confidence 359999999999987777666 4876
No 288
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=59.22 E-value=11 Score=39.34 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|+|+|+.|+.++..+...|.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~ 455 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD 455 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 467999999999999999999998987
No 289
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=9.6 Score=34.42 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
-.++-|+|+|+|++|.-++..+...|.++.-.+..+-|
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 34788999999999999999999999997555555444
No 290
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=58.67 E-value=17 Score=32.92 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=25.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
|.+|-|+|.|.+|...++.++..|.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~ 167 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMK 167 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe
Confidence 78999999999999999999999998
No 291
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=58.50 E-value=18 Score=32.98 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.3
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+..+.+|||+|+ |-+|...+..+...|..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~ 47 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHY 47 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCE
Confidence 346789999998 99999999999988876
No 292
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=58.35 E-value=32 Score=32.27 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILP 241 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~ 241 (256)
-.+.++||+|+|-+|..++.-+...|...+....+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 36789999999999999999999999875444333
No 293
>PLN02253 xanthoxin dehydrogenase
Probab=58.25 E-value=13 Score=31.93 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+.++||.|+ |++|...++.+...|++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~ 44 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAK 44 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCE
Confidence 3678999998 99999988887778877
No 294
>PRK12831 putative oxidoreductase; Provisional
Probab=58.12 E-value=12 Score=35.33 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...|++|+|+|+|.+|.-+++.+...|+.
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga~ 306 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGAE 306 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCCE
Confidence 46789999999999999999999999988
No 295
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=58.11 E-value=9.9 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 201 WKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.....+.++++|+-+|+|. |..+..+++..+..
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~ 44 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNG 44 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCc
Confidence 3445677788999999876 88888888876544
No 296
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=58.07 E-value=16 Score=32.78 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCcccee
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTRHTPHI 239 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~~~~~ 239 (256)
-++.+|||+|+ |-+|...+..+...|.. ++.+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~-V~~~ 45 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGL 45 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCE-EEEE
Confidence 45579999998 99999999999888875 3444
No 297
>PRK13243 glyoxylate reductase; Reviewed
Probab=58.06 E-value=17 Score=32.94 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~ 175 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMR 175 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999986
No 298
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=58.01 E-value=20 Score=32.47 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~ 171 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGAT 171 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 567899999999999999999998887
No 299
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.94 E-value=26 Score=31.04 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCC
Q 025173 201 WKVAEV-EEGSTVAIFGLGA-VGLSVLIRIHLKFTR 234 (256)
Q Consensus 201 ~~~~~~-~~g~~VlI~GaG~-vG~~aiqla~~~G~~ 234 (256)
.+..++ -.|.+|+|+|+|. +|...+.++...|+.
T Consensus 150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat 185 (283)
T PRK14192 150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT 185 (283)
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE
Confidence 334443 4789999999976 999999999999985
No 300
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=57.88 E-value=17 Score=31.12 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=23.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++.+|||+|+|.++.-=++.+...|++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~ 50 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCY 50 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 577999999999999888888888888
No 301
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=57.36 E-value=16 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=22.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
++|||.|.|.++.-+++-+|.+|.+
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~ 27 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIE 27 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCc
Confidence 5799999999999999999999998
No 302
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.34 E-value=15 Score=35.24 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.-.|+|+|+|+.|+.|+..+...|.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v 237 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRT 237 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcE
Confidence 346999999999999999999999883
No 303
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=57.34 E-value=23 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 201 WKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
.+...++++++||.+|+| .|..++.+++..+.
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~ 104 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGE 104 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCC
Confidence 456678899999999997 59999999988764
No 304
>PRK06436 glycerate dehydrogenase; Provisional
Probab=57.24 E-value=19 Score=32.18 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...+++++..|.+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~ 147 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMN 147 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE
Confidence 589999999999999999999998886
No 305
>PTZ00367 squalene epoxidase; Provisional
Probab=57.00 E-value=21 Score=34.84 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|+|+|+|..|++++..+...|.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~ 58 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRK 58 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCE
Confidence 3699999999999988888888876
No 306
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=56.99 E-value=14 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|..|++|..-|...|++
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~ 86 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMN 86 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC
Confidence 599999999999998888888987
No 307
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=56.93 E-value=10 Score=33.87 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCccceecceee
Q 025173 206 VEEGSTVAIFGL--GAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 206 ~~~g~~VlI~Ga--G~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
.++|++||=+|+ |.++.+| + .+|+++++.+..+-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA---~-klGA~~v~a~DiDp~ 195 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAA---A-KLGAKKVVAIDIDPL 195 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHH---H-HTTBSEEEEEESSCH
T ss_pred ccCCCEEEEeCCcHHHHHHHH---H-HcCCCeEEEecCCHH
Confidence 678899998886 3444433 3 348886665554433
No 308
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=56.93 E-value=14 Score=34.80 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
...|++|+|+|+|.+|+-++..+...|+..
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~~V 298 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGAEV 298 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCCEE
Confidence 346899999999999999999999999873
No 309
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.78 E-value=27 Score=31.06 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred hchhhHHHHHHHHHHhcCCC-CCCEEEEECCC-HHHHHHHHHHHHcCCCc
Q 025173 188 LLSCGVSTGLGAAWKVAEVE-EGSTVAIFGLG-AVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG-~vG~~aiqla~~~G~~~ 235 (256)
.+||.....+. +.+..++. .|.+|+|+|.| .+|.-...++...|+..
T Consensus 136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtV 184 (285)
T PRK14191 136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASV 184 (285)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEE
Confidence 45666554444 45666654 69999999985 99999999999999884
No 310
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.58 E-value=32 Score=26.67 Aligned_cols=35 Identities=3% Similarity=0.041 Sum_probs=24.2
Q ss_pred HHHhcCCCCCCEEEEECC---CHHHHHHHHHHHHcCCC
Q 025173 200 AWKVAEVEEGSTVAIFGL---GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~Ga---G~vG~~aiqla~~~G~~ 234 (256)
+....++++||.++++.. .+.=.-+++.||.+|..
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 344566899999988833 46778899999999998
No 311
>PLN02852 ferredoxin-NADP+ reductase
Probab=56.38 E-value=18 Score=34.73 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHL--KFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~--~G~~ 234 (256)
.+.+|+|+|+|+.|+.|+..+.. .|++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~ 53 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGAR 53 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCe
Confidence 46789999999999999988865 5666
No 312
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=56.32 E-value=12 Score=32.81 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeE
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLIL 245 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~ 245 (256)
..+|+|+|+|++|.-+++.+-..|......+..+.+-
T Consensus 26 ~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve 62 (287)
T PTZ00245 26 HTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVT 62 (287)
T ss_pred hCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccc
Confidence 4679999999999999999999999865555555443
No 313
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=56.23 E-value=15 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-+.+.+|+|+|||..|++|++-+-..|..
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~ 46 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFI 46 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCc
Confidence 34455899999999999988888766665
No 314
>PLN02572 UDP-sulfoquinovose synthase
Probab=56.17 E-value=19 Score=33.88 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++.+|||+|+ |.+|...++.+...|++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~ 73 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYE 73 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCe
Confidence 45678999998 99999999998888887
No 315
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=56.13 E-value=67 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=33.1
Q ss_pred hchhhHHHHHHHHHHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 188 LLSCGVSTGLGAAWKVAEVE-EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+++|.....+. +.+..++. .|.+|+|+|. ..+|.-...++...|+.
T Consensus 7 ~~p~t~~a~~~-ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gat 54 (140)
T cd05212 7 FVSPVAKAVKE-LLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGAT 54 (140)
T ss_pred ccccHHHHHHH-HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence 44544444444 34445543 6999999998 79999999999988887
No 316
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.72 E-value=20 Score=33.84 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++.+|||+|+ |-+|...++.+...|.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~ 145 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS 145 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE
Confidence 5688999998 99999999999988877
No 317
>PLN02463 lycopene beta cyclase
Probab=55.58 E-value=16 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+.|++++..+...|.+
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~ 53 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLS 53 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe
Confidence 589999999999987777667877
No 318
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=55.42 E-value=15 Score=26.74 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=17.5
Q ss_pred eeEEEEEccC--------CC-cccCCCCEEeeec
Q 025173 85 AVGVVESVGG--------GV-EEVREGDLVLPVF 109 (256)
Q Consensus 85 ~vG~Vv~vG~--------~v-~~~~vGd~V~~~~ 109 (256)
..|+|+++|+ .+ ..+++||+|+...
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPK 68 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEET
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEeccc
Confidence 4799999999 22 3589999998553
No 319
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=55.23 E-value=17 Score=30.98 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=24.7
Q ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 204 AEVEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+.-..+.+|||+|+ |.+|...++.+...|+.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~ 43 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFA 43 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCE
Confidence 33344679999998 99999998888777876
No 320
>PRK14852 hypothetical protein; Provisional
Probab=54.45 E-value=16 Score=37.96 Aligned_cols=42 Identities=24% Similarity=0.062 Sum_probs=34.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~ 249 (256)
...+|+|+|+|++|..++..+-.+|..+...+..|.|-.++.
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL 372 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL 372 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc
Confidence 367899999999999999999999998877777777655543
No 321
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=53.90 E-value=23 Score=31.78 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~ 161 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFP 161 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999986
No 322
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=53.55 E-value=23 Score=32.78 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|.|+|.|.+|...++.++..|.+
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~ 141 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIK 141 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCE
Confidence 3689999999999999999999999987
No 323
>PRK14982 acyl-ACP reductase; Provisional
Probab=53.30 E-value=25 Score=32.11 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHH-cCCCc
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHL-KFTRH 235 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~-~G~~~ 235 (256)
-.+.+|+|+|| |.+|..+++.+.. .|.+.
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~ 183 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAE 183 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCE
Confidence 35789999999 8999998888864 45553
No 324
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.19 E-value=23 Score=32.97 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
....+++|.|.|.+|...++.+...|..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~ 256 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS 256 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe
Confidence 3468899999999999999999888887
No 325
>PRK14967 putative methyltransferase; Provisional
Probab=52.73 E-value=46 Score=27.94 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=23.8
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
....++++++||-.|+|. |.+++.+++. +.
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~ 59 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GA 59 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CC
Confidence 345678899999999987 8888888875 54
No 326
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=51.88 E-value=41 Score=31.15 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=25.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|.+|.|+|.|.+|...++.++..|.+
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~~ 141 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGWK 141 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 4688999999999999999999999987
No 327
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=51.83 E-value=17 Score=34.47 Aligned_cols=45 Identities=24% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhh
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQE 251 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~ 251 (256)
+--++++|+|+|.+|+=..++.+.+|.+.++.-..+.+.-.+.++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~e 215 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPE 215 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHH
Confidence 455889999999999999999999999966654444444433333
No 328
>PLN02985 squalene monooxygenase
Probab=51.79 E-value=19 Score=34.66 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=20.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|+|+|+|..|+++...+...|.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~ 68 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRR 68 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCe
Confidence 3699999999999887777777876
No 329
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.39 E-value=22 Score=35.09 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
.++|+|.|.|.+|+..++.++..|.. .+.++.+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~--------vvvID~d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK--------MTVLDHDPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC--------EEEEECCHHHH
Confidence 36899999999999999999999887 45566555543
No 330
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=50.10 E-value=34 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.+...+++|++||-+|+| .|..+.-+++..|..
T Consensus 64 ~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~ 97 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPV 97 (209)
T ss_dssp HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTT
T ss_pred HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCcc
Confidence 4567789999999999864 478888888887754
No 331
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.10 E-value=18 Score=34.32 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=24.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+.+|+|+|.|..|++++++++..|+.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~ 40 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCD 40 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCE
Confidence 456799999999999999999999984
No 332
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.35 E-value=26 Score=31.50 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
-.|.+++|+|+ +++|..+++-+...|++
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~ 61 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAH 61 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCE
Confidence 34578899999 99999999999999987
No 333
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=49.26 E-value=54 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.7
Q ss_pred CCCCCCEEEEE--CC-CHHHHHHHHHHHHcCCC
Q 025173 205 EVEEGSTVAIF--GL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 205 ~~~~g~~VlI~--Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++.|++|+|| |. |-.|+.|+.++...|..
T Consensus 129 ~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~ 161 (168)
T PF05706_consen 129 RLENGRKVLVHCRGGLGRTGLVAACLLLELGDT 161 (168)
T ss_dssp HHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SS
T ss_pred HHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 35678999999 55 99999999988877643
No 334
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.05 E-value=29 Score=32.42 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~ 176 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMR 176 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999987
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=48.51 E-value=29 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
...-.|+|+|+|+.|+.|+..+...|.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~ 239 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTA 239 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEE
Confidence 334579999999999999999999998843
No 336
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=47.80 E-value=32 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=24.2
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
++..+|||+|+ |-+|...++.+...|..
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~ 146 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDE 146 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCE
Confidence 35578999998 99999999988888876
No 337
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=47.68 E-value=22 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..|+|.|+|+.|+.|...+-..|.+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~k 55 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLK 55 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCce
Confidence 3478889999999998888888888
No 338
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=47.38 E-value=23 Score=36.96 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..|+|+|+|+.|+.|+..+...|.+
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~ 188 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGAR 188 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc
Confidence 4699999999999999999889988
No 339
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.08 E-value=27 Score=34.29 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=29.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
.++|+|.|.|.+|+..++.++..|.. .+.++.+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~--------vvvID~d~~~v 436 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR--------ITVLERDISAV 436 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC--------EEEEECCHHHH
Confidence 36899999999999999999998888 55566555543
No 340
>PRK07574 formate dehydrogenase; Provisional
Probab=46.56 E-value=34 Score=31.75 Aligned_cols=27 Identities=44% Similarity=0.632 Sum_probs=24.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~ 217 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVK 217 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 567899999999999999999999887
No 341
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=46.50 E-value=33 Score=31.70 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.3
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEeechhhhh
Q 025173 197 LGAAWKVAE-VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMSEVQEMY 253 (256)
Q Consensus 197 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~~~~~~~ 253 (256)
+-++.+..+ +-+|++++|.|=|-+|.-..+.++-+|++ |+++|.++.+
T Consensus 196 ~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~---------ViVtEvDPI~ 244 (420)
T COG0499 196 LDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR---------VIVTEVDPIR 244 (420)
T ss_pred HHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCe---------EEEEecCchH
Confidence 444545344 56899999999899999999999999999 6777766543
No 342
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=46.40 E-value=23 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=17.4
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|.|+|+.|+.+...+...|.+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~k 42 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLK 42 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-
T ss_pred CEEEECCChhHHHHHHHHHHCCCe
Confidence 388889999999988877777777
No 343
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=46.19 E-value=27 Score=35.71 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+|+|+|+|..|+.+...+...|.+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~ 263 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK 263 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc
Confidence 46799999999999999999888887
No 344
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=46.11 E-value=26 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|++|+|+|+|.+|+-++..+...|.+
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~ 197 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAE 197 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 378999999999999888777777877
No 345
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=46.03 E-value=40 Score=23.83 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=16.0
Q ss_pred cCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCC
Q 025173 204 AEVEEGSTVAIFGL-GAVGLSVLIRI-HLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~Ga-G~vG~~aiqla-~~~G~~ 234 (256)
..++-.++|||+|+ ++.|+++-.-+ -..|+.
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~ 66 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGAD 66 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC--E
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCCC
Confidence 34433489999998 89998753332 234444
No 346
>PRK08317 hypothetical protein; Provisional
Probab=45.85 E-value=47 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G 232 (256)
+.+...++++++||-+|+|. |..+..+++..+
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~ 42 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVG 42 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcC
Confidence 34667889999999999976 888888888764
No 347
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.28 E-value=23 Score=33.35 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+.+|+|+|.|..|++++++++..|+..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~ 41 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVT 41 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEE
Confidence 6789999999999999999999998633
No 348
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=35 Score=25.12 Aligned_cols=23 Identities=43% Similarity=0.510 Sum_probs=17.1
Q ss_pred eEEEEEccCCCc---------ccCCCCEEeee
Q 025173 86 VGVVESVGGGVE---------EVREGDLVLPV 108 (256)
Q Consensus 86 vG~Vv~vG~~v~---------~~~vGd~V~~~ 108 (256)
-|+|+++|..-. .+++||+|+..
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ 68 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFG 68 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEEC
Confidence 489999986321 39999999843
No 349
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.64 E-value=27 Score=32.05 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=23.8
Q ss_pred cCCCCCCEEEEECCCHHHHHHH-HHHHHcCCCccceec
Q 025173 204 AEVEEGSTVAIFGLGAVGLSVL-IRIHLKFTRHTPHIL 240 (256)
Q Consensus 204 ~~~~~g~~VlI~GaG~vG~~ai-qla~~~G~~~~~~~~ 240 (256)
+...+.-.|+|+|+|.+|+++. +|++..|...+..+.
T Consensus 25 ~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle 62 (407)
T TIGR01373 25 PEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLE 62 (407)
T ss_pred CCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3344555789999999998865 555545753333333
No 350
>PRK06720 hypothetical protein; Provisional
Probab=44.54 E-value=32 Score=27.77 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=21.5
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+..++|.|+ +++|...+..+...|++
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~ 42 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAK 42 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCE
Confidence 4678888888 78998888777777766
No 351
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=44.52 E-value=33 Score=33.97 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc-CCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVLIRIHLK-FTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~aiqla~~~-G~~ 234 (256)
+++.+|||+|+ |-+|...++.+... |.+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~ 342 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYE 342 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcE
Confidence 56778999998 99999999888765 455
No 352
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=43.81 E-value=31 Score=32.37 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+..+++|+|+|+|.+|.-++..+...|+..
T Consensus 269 ~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~ 299 (457)
T PRK11749 269 DLPVGKRVVVIGGGNTAMDAARTAKRLGAES 299 (457)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHHcCCCe
Confidence 3457899999999999998888888888853
No 353
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=43.42 E-value=32 Score=35.83 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=25.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.|++|+|+|+|.+|.-++..|+..|+..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~V 473 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNV 473 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEE
Confidence 6899999999999999999999999973
No 354
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=42.67 E-value=15 Score=34.92 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccceecce
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPT 242 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~ 242 (256)
-.|++|+|+|.|..|.+..+-++..|..+++.+.+.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~ 69 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKE 69 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEecccc
Confidence 457999999999999988888888888866555443
No 355
>PRK13748 putative mercuric reductase; Provisional
Probab=42.49 E-value=31 Score=33.21 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+-|+.+...|...|.+
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~ 123 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGAR 123 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCe
Confidence 489999999999999999889987
No 356
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=42.45 E-value=47 Score=29.75 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=27.3
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 201 WKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+...+++|++|+=-=+|..|.....+|+.+|++-
T Consensus 54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~ 88 (300)
T COG0031 54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRL 88 (300)
T ss_pred HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcE
Confidence 45667999995443334999999999999999993
No 357
>PRK07846 mycothione reductase; Reviewed
Probab=42.17 E-value=31 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=24.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.++|+|+|+|.+|.-+++.++..|.+.++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 195 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVV 195 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 479999999999999988888888874333
No 358
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=42.04 E-value=40 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIH-LKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~-~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++ ..|.+
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~ 171 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMP 171 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCE
Confidence 5789999999999999999998 77776
No 359
>PRK08618 ornithine cyclodeaminase; Validated
Probab=42.03 E-value=63 Score=28.99 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCCc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRI-HLKFTRH 235 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla-~~~G~~~ 235 (256)
+...+++|+|+|..|...++.+ ...+.+.
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~ 154 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIER 154 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccE
Confidence 3567899999999998776544 4556653
No 360
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.02 E-value=36 Score=33.76 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|++|..-|+..|++
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~~ 60 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGYN 60 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCCc
Confidence 489999999999888888778887
No 361
>PRK07121 hypothetical protein; Validated
Probab=42.01 E-value=27 Score=33.17 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|+.|..-|...|++
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~ 45 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGAR 45 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe
Confidence 489999999999887777777876
No 362
>PLN03139 formate dehydrogenase; Provisional
Probab=41.93 E-value=40 Score=31.30 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=25.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 578999999999999999999999987
No 363
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=41.69 E-value=42 Score=31.42 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
-..-++|+|.|| |.+|+..++.++..|..
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~ 105 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFS 105 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCe
Confidence 345678999999 99999999999999965
No 364
>PRK12861 malic enzyme; Reviewed
Probab=41.51 E-value=59 Score=33.02 Aligned_cols=42 Identities=14% Similarity=-0.088 Sum_probs=31.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~~v~~~~~ 249 (256)
...+|++.|+|..|...+.++...|.+ +++.+....+...++
T Consensus 188 ~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r 231 (764)
T PRK12861 188 KEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGR 231 (764)
T ss_pred hHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCC
Confidence 457899999999999999999999985 555555555555444
No 365
>PRK12862 malic enzyme; Reviewed
Probab=41.43 E-value=66 Score=32.73 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=33.6
Q ss_pred HhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecceeeEeech
Q 025173 202 KVAEVE-EGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPTLILMSEV 249 (256)
Q Consensus 202 ~~~~~~-~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~~v~~~~~ 249 (256)
+..+.+ ...+|++.|+|..|...++++...|.. +.+.+....+...++
T Consensus 185 ~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r 235 (763)
T PRK12862 185 KLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR 235 (763)
T ss_pred HHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC
Confidence 344433 457899999999999999999999985 555555555444433
No 366
>PLN02256 arogenate dehydrogenase
Probab=41.28 E-value=63 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.+...-..+.+|.|+|.|.+|...+..++..|..
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~ 61 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHT 61 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCE
Confidence 34455555677899999999999888888777754
No 367
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=41.24 E-value=38 Score=25.45 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.4
Q ss_pred EEEEECC-CHHHHHHHHHHHHc
Q 025173 211 TVAIFGL-GAVGLSVLIRIHLK 231 (256)
Q Consensus 211 ~VlI~Ga-G~vG~~aiqla~~~ 231 (256)
+|.|+|+ |.+|...++++...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h 22 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH 22 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhcC
Confidence 5899997 99999999988874
No 368
>PLN02306 hydroxypyruvate reductase
Probab=40.94 E-value=43 Score=31.10 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIH-LKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~-~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++ ..|.+
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~ 191 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN 191 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCE
Confidence 4789999999999999999975 77876
No 369
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=40.94 E-value=87 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
+.....+++|++||-+|+| .|..+..+++..+.
T Consensus 68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~ 100 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGK 100 (212)
T ss_pred HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCC
Confidence 3466778999999999874 36666777777653
No 370
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=40.68 E-value=51 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=25.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+.++++|+|+|+|.+|+-++..++..|.+.+
T Consensus 141 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vt 171 (396)
T PRK09754 141 LQPERSVVIVGAGTIGLELAASATQRRCKVT 171 (396)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 4568899999999999988888888888743
No 371
>PRK07340 ornithine cyclodeaminase; Validated
Probab=40.59 E-value=91 Score=27.75 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHL-KFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~-~G~~ 234 (256)
....+++|+|+|..|...++.+.. .+.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~ 151 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVR 151 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCC
Confidence 456789999999999998888764 4555
No 372
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=40.58 E-value=37 Score=30.91 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
-.|.+|.|+|-|.+|...++.++..|.+.++.
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 35889999999999999999999999985443
No 373
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=40.49 E-value=57 Score=32.38 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=26.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
....|++|+|+|+|.+|.-++..+...|+..
T Consensus 319 ~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~ 349 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAIDAARTALRLGAES 349 (652)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHcCCCe
Confidence 4678999999999999998888888888763
No 374
>PLN02529 lysine-specific histone demethylase 1
Probab=40.27 E-value=40 Score=34.12 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+|+|+|+|..|+.+...+...|.+
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~ 185 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFK 185 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCc
Confidence 45799999999999999999999987
No 375
>PLN02697 lycopene epsilon cyclase
Probab=40.14 E-value=40 Score=32.69 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+.|+++...+...|.+
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~ 133 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLN 133 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc
Confidence 589999999999887777677877
No 376
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=39.86 E-value=41 Score=33.22 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|++|+.-|...|++
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~~ 54 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGYK 54 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCCc
Confidence 499999999999877777777887
No 377
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=39.79 E-value=44 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=17.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-++++|+|+|+|..+.-++..+...|.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~ 192 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKS 192 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSE
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCE
Confidence 4579999999987776655555555533
No 378
>PTZ00058 glutathione reductase; Provisional
Probab=39.67 E-value=39 Score=32.95 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.+++|+|+|+|.+|.-.++.+...|.+.++.
T Consensus 236 ~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli 266 (561)
T PTZ00058 236 EAKRIGIAGSGYIAVELINVVNRLGAESYIF 266 (561)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 3789999999999998888888899885443
No 379
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=39.54 E-value=53 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=20.3
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+.....++.+||-+|+|. |..+..+|+. |..
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~~ 54 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GFD 54 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CCE
Confidence 344455678888888754 6667777764 554
No 380
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=39.42 E-value=37 Score=31.91 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=16.9
Q ss_pred EEEEECCCHHHHHHH-HHHHHc-CCC
Q 025173 211 TVAIFGLGAVGLSVL-IRIHLK-FTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~ai-qla~~~-G~~ 234 (256)
.|+|+|+|.+|+++. +|++.. |.+
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~ 51 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALD 51 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCe
Confidence 488889998998866 555543 555
No 381
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.41 E-value=38 Score=32.03 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=25.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
..++|+|+|+|.+|.-+.+.+...|.+.++
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtl 202 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDV 202 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 358999999999999988888888887443
No 382
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=39.28 E-value=37 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=24.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
+++|+|+|+|.+|.-.++.+...|.+.++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli 195 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLV 195 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 579999999999998888888888874433
No 383
>PLN02676 polyamine oxidase
Probab=39.18 E-value=74 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.-.|+|+|+|..|+.+...++..|..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~ 51 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIE 51 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC
Confidence 45699999999999999999888863
No 384
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=39.01 E-value=40 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
...+++|+|+|+|.+|+-++..+...|+..
T Consensus 278 ~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~ 307 (471)
T PRK12810 278 SAKGKHVVVIGGGDTGMDCVGTAIRQGAKS 307 (471)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHcCCCe
Confidence 356899999999999999988888888753
No 385
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=38.75 E-value=50 Score=29.69 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
-..++|.|+|.+|+.+...++..|.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v 162 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKV 162 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeE
Confidence 578999999999999999999999873
No 386
>PRK07804 L-aspartate oxidase; Provisional
Probab=38.52 E-value=32 Score=33.23 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|++|+.-|...|++
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G~~ 41 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAGRR 41 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcCCe
Confidence 488899999999887777777876
No 387
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=38.47 E-value=36 Score=33.78 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..|+|+|+|.+|++++.-+...|.+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~ 285 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ 285 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe
Confidence 4799999999999988777777877
No 388
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.41 E-value=38 Score=31.69 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-.++.+...|.+.
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~V 201 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKV 201 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 4689999999999998888888888773
No 389
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=38.19 E-value=73 Score=25.70 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=30.1
Q ss_pred hhchhhHHHHHHHHHHhcCC-CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 187 CLLSCGVSTGLGAAWKVAEV-EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 187 a~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
..++|.....+. +.+..++ -.|++|+|+|. ..+|.-...++...|+.
T Consensus 14 ~~~PcTp~aii~-lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at 62 (160)
T PF02882_consen 14 GFVPCTPLAIIE-LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT 62 (160)
T ss_dssp SS--HHHHHHHH-HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-E
T ss_pred CCcCCCHHHHHH-HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCe
Confidence 455655554444 3444543 47899999998 68999999999999988
No 390
>PRK08605 D-lactate dehydrogenase; Validated
Probab=38.11 E-value=51 Score=29.79 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRI-HLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla-~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.+ +..|.+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~ 172 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSD 172 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCE
Confidence 478999999999999888887 555655
No 391
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=38.04 E-value=43 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
...|++|+|+|+|.+|.-++..++..|+..
T Consensus 568 ~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~ 597 (1006)
T PRK12775 568 ISLGKSVVVIGAGNTAMDCLRVAKRLGAPT 597 (1006)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence 457899999999999999999999999874
No 392
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=37.88 E-value=87 Score=31.84 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--ccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR--HTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~--~~~~~~~~~v~~~~~ 249 (256)
...+|++.|+|..|...+.++...|.. +++.+....+...++
T Consensus 184 ~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r 227 (752)
T PRK07232 184 EDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGR 227 (752)
T ss_pred hhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCC
Confidence 467899999999999999999999984 555555555554443
No 393
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=37.42 E-value=40 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.|+|+|+|.+|..+..-+...|.+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~ 96 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR 96 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE
Confidence 3599999999999988888888987
No 394
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=37.31 E-value=42 Score=31.58 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+++++|+|+|.+|+-.+..+...|.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vt 196 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVT 196 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEE
Confidence 5799999999999998888888887733
No 395
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=37.28 E-value=42 Score=31.21 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-+++.++..|...
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~V 183 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKV 183 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 4579999999999998888888888763
No 396
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=37.15 E-value=48 Score=32.90 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|+.|+.-|...|++
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~ 75 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFN 75 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCc
Confidence 499999999999877777777887
No 397
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=41 Score=25.06 Aligned_cols=28 Identities=39% Similarity=0.456 Sum_probs=19.7
Q ss_pred eeeeeEEEEEccCCCc---------ccCCCCEEeeec
Q 025173 82 GHEAVGVVESVGGGVE---------EVREGDLVLPVF 109 (256)
Q Consensus 82 G~e~vG~Vv~vG~~v~---------~~~vGd~V~~~~ 109 (256)
+-...|+|+++|+... .+++||+|+..-
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpe 77 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPE 77 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEeec
Confidence 3345688888887542 489999998643
No 398
>PRK06141 ornithine cyclodeaminase; Validated
Probab=37.02 E-value=1.2e+02 Score=27.14 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHL-KFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~-~G~~ 234 (256)
....+|+|+|+|..|...++.+.. .+.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~ 151 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIK 151 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCC
Confidence 456789999999999998764443 5555
No 399
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=36.86 E-value=38 Score=27.40 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=18.5
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.....+.+||=.|+| .|+..+.+++..+..
T Consensus 41 ~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~ 70 (173)
T PF10294_consen 41 PELFRGKRVLELGAG-TGLPGIAAAKLFGAA 70 (173)
T ss_dssp GGGTTTSEEEETT-T-TSHHHHHHHHT-T-S
T ss_pred hhhcCCceEEEECCc-cchhHHHHHhccCCc
Confidence 345678899999986 566666666664544
No 400
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=36.79 E-value=39 Score=31.76 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.++|+|+|+|.+|.-++.+++..|.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~V 196 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKV 196 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeE
Confidence 478999999999998888888888763
No 401
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=36.73 E-value=36 Score=35.68 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=32.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceeeEee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLILMS 247 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v~~~ 247 (256)
..+|||+|+|++|.-+++.+-..|......+..+.+-.+
T Consensus 24 ~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~s 62 (1008)
T TIGR01408 24 KSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAW 62 (1008)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHh
Confidence 367999999999999999999999997777776665433
No 402
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.42 E-value=89 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=25.6
Q ss_pred HHHhcCCCCCCEEEEE-C--C-CHHHHHHHHHHHHcCCCccc
Q 025173 200 AWKVAEVEEGSTVAIF-G--L-GAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~-G--a-G~vG~~aiqla~~~G~~~~~ 237 (256)
+.+.....+..+|+|+ | . |+-|+.+.+.+...|.+.++
T Consensus 16 i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 16 IRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 4444434667778777 4 3 78889999999999988433
No 403
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=36.33 E-value=1.1e+02 Score=29.83 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHH----HcCC------CccceecceeeEeec
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIH----LKFT------RHTPHILPTLILMSE 248 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~----~~G~------~~~~~~~~~~v~~~~ 248 (256)
...+|++.|||..|...+.++. ..|. ++...+..+.....+
T Consensus 296 ~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~ 346 (559)
T PTZ00317 296 EEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTT 346 (559)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC
Confidence 4678899999988877666655 3576 455555555544443
No 404
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.26 E-value=1.2e+02 Score=27.55 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=25.7
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 206 VEEGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 206 ~~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.++..+|+|.|. .++|++.+.-++..|+..
T Consensus 30 ~k~~~hi~itggS~glgl~la~e~~~~ga~V 60 (331)
T KOG1210|consen 30 PKPRRHILITGGSSGLGLALALECKREGADV 60 (331)
T ss_pred cCccceEEEecCcchhhHHHHHHHHHccCce
Confidence 345578999976 899999999999999994
No 405
>PLN02507 glutathione reductase
Probab=36.24 E-value=47 Score=31.74 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=22.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+-|+.+...|...|.+
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~ 50 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAK 50 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe
Confidence 489999999999999999999987
No 406
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=36.11 E-value=44 Score=35.12 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-----CccceecceeeEeec
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFT-----RHTPHILPTLILMSE 248 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~-----~~~~~~~~~~v~~~~ 248 (256)
..+|+|+|+|++|.-+++.+-.+|. .+...+..+.|-.+.
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SN 463 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSN 463 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccc
Confidence 4579999999999999999999998 566666666665544
No 407
>PRK07877 hypothetical protein; Provisional
Probab=36.00 E-value=38 Score=34.20 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CccceecceeeEeech
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFT-RHTPHILPTLILMSEV 249 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~-~~~~~~~~~~v~~~~~ 249 (256)
..+|+|+|+| +|..+++.+-..|. .+...+..|.|-.++.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNL 147 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNL 147 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccccc
Confidence 5679999998 99998888888885 7777777777655543
No 408
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=35.98 E-value=44 Score=33.76 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...|++|+|+|+|.+|.-++..++..|+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~ 595 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAE 595 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999987
No 409
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=35.92 E-value=44 Score=31.77 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
...+++|.|+|+|+-|+.+...+...|..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~ 148 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD 148 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCe
Confidence 34579999999999999988888888887
No 410
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=35.66 E-value=45 Score=31.46 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.++|+|+|+|.+|+-+++.++..|.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~V 206 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEV 206 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 579999999999999888888888773
No 411
>PTZ00058 glutathione reductase; Provisional
Probab=35.60 E-value=47 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.7
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+-|..|+.-|...|.+
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ 73 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAK 73 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCe
Confidence 489999999999999999999987
No 412
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=35.49 E-value=56 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-+.|||+||+.-.|.-|+-++..++..|++
T Consensus 88 ~lePgd~vLv~~~G~wg~ra~D~~~r~ga~ 117 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQRAADCARRYGAE 117 (385)
T ss_pred hcCCCCeEEEEEechHHHHHHHHHHhhCce
Confidence 357999999977799999999999999998
No 413
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=35.21 E-value=62 Score=29.28 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.++.|+|.|.+|++..+.++..|.+
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~ 171 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMK 171 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCE
Confidence 488999999999999999999977777
No 414
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=35.11 E-value=1.2e+02 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G 232 (256)
+.+...++++++||=+|+|. |..+..+++..+
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~ 95 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIE 95 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcC
Confidence 34566788999999998754 666777777654
No 415
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=35.10 E-value=60 Score=31.36 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=25.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~ 165 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMK 165 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 478999999999999999999999987
No 416
>PLN02427 UDP-apiose/xylose synthase
Probab=34.98 E-value=52 Score=29.91 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcC-CC
Q 025173 209 GSTVAIFGL-GAVGLSVLIRIHLKF-TR 234 (256)
Q Consensus 209 g~~VlI~Ga-G~vG~~aiqla~~~G-~~ 234 (256)
..+|||+|+ |-+|...++.+...| .+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~ 41 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHK 41 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCE
Confidence 357999998 999999888887774 44
No 417
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=34.92 E-value=1.2e+02 Score=29.85 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=27.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC------CccceecceeeEeech
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHL-----KFT------RHTPHILPTLILMSEV 249 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~-----~G~------~~~~~~~~~~v~~~~~ 249 (256)
...+|++.|||..|...+++... .|. +++..+..+.....+.
T Consensus 320 ~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r 372 (581)
T PLN03129 320 ADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR 372 (581)
T ss_pred hhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC
Confidence 45788999999888887766655 355 3455555554444433
No 418
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=34.87 E-value=46 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-+++.++..|.+.
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~V 198 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDV 198 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeE
Confidence 3579999999999998888888888873
No 419
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=34.85 E-value=59 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=18.7
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH
Q 025173 203 VAEVEEGSTVAIFGLGAVGLSVLIRIH 229 (256)
Q Consensus 203 ~~~~~~g~~VlI~GaG~vG~~aiqla~ 229 (256)
...+++|++||.+|+|.-++......+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~ 53 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQ 53 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHH
Confidence 456789999999998765554433333
No 420
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.76 E-value=1.3e+02 Score=25.28 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHhcCCCCCCEEEEE---CC-CHHHHHHHHHHHHcCCCcccee
Q 025173 189 LSCGVSTGLGAAWKVAEVEEGSTVAIF---GL-GAVGLSVLIRIHLKFTRHTPHI 239 (256)
Q Consensus 189 l~~~~~ta~~~l~~~~~~~~g~~VlI~---Ga-G~vG~~aiqla~~~G~~~~~~~ 239 (256)
+..+....+..+.+........+|+|. |. |+=|+.+.+.++..|+..++..
T Consensus 29 MEnAG~aVa~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~ 83 (203)
T COG0062 29 MENAGLAVARAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLL 83 (203)
T ss_pred HHHHHHHHHHHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEE
Confidence 333444444545455444336678887 44 8889999999999997754443
No 421
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=34.73 E-value=66 Score=31.55 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
....+|+|+|+|-+|.+.++-|+.+|.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~ 47 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIK 47 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 4567899999999999999999999988
No 422
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=34.69 E-value=29 Score=26.27 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=28.3
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (256)
.++|-.++|+|.--|......++||+|++..+.
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~ 90 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMAYA 90 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 467888999999989888889999999887654
No 423
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=34.67 E-value=45 Score=23.46 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECC
Q 025173 196 GLGAAWKVAEVEEGSTVAIFGL 217 (256)
Q Consensus 196 a~~~l~~~~~~~~g~~VlI~Ga 217 (256)
++.-+.+...+++||+|++.+.
T Consensus 56 ~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 56 NLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHcCCCCCCCEEEEEEE
Confidence 3444556778999999999864
No 424
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=34.66 E-value=50 Score=31.00 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.++|+|+|+|.+|+-++..++..|.+.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~V 192 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEV 192 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 478999999999998888888888773
No 425
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=34.59 E-value=50 Score=31.12 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=29.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccceecceee
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPHILPTLI 244 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~~~~v 244 (256)
..+|+|+|+|++|.-++.-+-..|......+..+.|
T Consensus 20 ~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V 55 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKV 55 (425)
T ss_pred hCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 467999999999999999999999987666666554
No 426
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=34.55 E-value=1.2e+02 Score=27.48 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.+..|+|+|+ +++|...+.-+..+|.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~ 55 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKGFR 55 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcCCE
Confidence 4556999999 99999888888888888
No 427
>PRK06370 mercuric reductase; Validated
Probab=34.49 E-value=48 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=23.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-++..++..|.+.
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~V 197 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEV 197 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 3589999999999998888888888773
No 428
>PLN02735 carbamoyl-phosphate synthase
Probab=34.45 E-value=35 Score=36.19 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcCCCCCCEEEEECCCHH-----------HHHHHHHHHHcCCC
Q 025173 192 GVSTGLGAAWKVAEVEEGSTVAIFGLGAV-----------GLSVLIRIHLKFTR 234 (256)
Q Consensus 192 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~v-----------G~~aiqla~~~G~~ 234 (256)
....||.+.....+-..=.+|||+|+|++ |..+++-++..|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~ 59 (1102)
T PLN02735 6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYE 59 (1102)
T ss_pred cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCE
Confidence 33456665432222223368999999874 56688889999997
No 429
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=34.40 E-value=99 Score=32.38 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=27.3
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
....+.+|++|+|+|+|.+|+-.+..+...|.+
T Consensus 310 ~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~ 342 (985)
T TIGR01372 310 NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIA 342 (985)
T ss_pred HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 444567899999999999998888888888876
No 430
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=33.96 E-value=52 Score=29.91 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+.+|.|+|.|.+|.+.++-++..|...
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~V 43 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDV 43 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEE
Confidence 4688999999999999999999998863
No 431
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=33.90 E-value=51 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|+-.+..++..|.+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~V 195 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKV 195 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 4579999999999998888888888773
No 432
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=33.85 E-value=44 Score=24.61 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.0
Q ss_pred ccCCCCEEeeecc
Q 025173 98 EVREGDLVLPVFQ 110 (256)
Q Consensus 98 ~~~vGd~V~~~~~ 110 (256)
.+++||+|++.+.
T Consensus 76 ~Lk~GD~V~ll~~ 88 (100)
T PF10844_consen 76 GLKVGDKVLLLRV 88 (100)
T ss_pred CCcCCCEEEEEEe
Confidence 5999999998764
No 433
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=33.75 E-value=75 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+|.|+|+ |.+|...+.++...+.-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~ 26 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLA 26 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCC
Confidence 5889999 99999999888888764
No 434
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=33.63 E-value=66 Score=32.39 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+|.|+|+|.+|.-.++++-..|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~ 338 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP 338 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe
Confidence 4799999999999888888888988
No 435
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.53 E-value=73 Score=31.18 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=19.9
Q ss_pred CCCCEEEEECC-CHHHHHHH-HHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLSVL-IRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~ai-qla~~~G~~ 234 (256)
=.|++|||+|+ |.+|.-.+ |+++. +.+
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~-~p~ 276 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKF-NPK 276 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhc-CCC
Confidence 35899999998 89997644 55544 655
No 436
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.37 E-value=1e+02 Score=27.58 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=34.2
Q ss_pred hchhhHHHHHHHHHHhcCC-CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 188 LLSCGVSTGLGAAWKVAEV-EEGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
.++|.....+. +.+..++ -.|.+|+|+|- +.+|.-.+.++...|+.
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t 184 (296)
T PRK14188 137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANAT 184 (296)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCE
Confidence 45666554444 4455554 46999999995 99999999999888887
No 437
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.26 E-value=66 Score=29.21 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+..+++|+|+|+|.+|.-++..+...|.+
T Consensus 138 ~~~~~~vvViGgG~~g~e~A~~L~~~g~~ 166 (377)
T PRK04965 138 LRDAQRVLVVGGGLIGTELAMDLCRAGKA 166 (377)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhcCCe
Confidence 45678999999999998888887777776
No 438
>PLN00106 malate dehydrogenase
Probab=33.26 E-value=68 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga-G~vG~~aiqla~~~G~~ 234 (256)
+..+|+|+|+ |.+|..+...+...+..
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~ 44 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLV 44 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 3469999999 99999999988876653
No 439
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=33.17 E-value=67 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|.+|.|+|.|.+|...++.++..|.+
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~~ 163 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGMK 163 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 578999999999999999999999986
No 440
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=32.90 E-value=90 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.5
Q ss_pred cCCCCCCEEEEE---CC-CHHHHHHHHHHHHcCCC
Q 025173 204 AEVEEGSTVAIF---GL-GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 204 ~~~~~g~~VlI~---Ga-G~vG~~aiqla~~~G~~ 234 (256)
..+++||+|||+ -+ |+.-.+++++.+..|+.
T Consensus 111 ~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~ 145 (179)
T COG0503 111 DALKPGDRVLIVDDLLATGGTALALIELLEQAGAE 145 (179)
T ss_pred hhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCE
Confidence 345699999998 34 89999999999999998
No 441
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=32.87 E-value=94 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-+...++..|.+.
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~~V 174 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGLHP 174 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcE
Confidence 4679999999999998888888888773
No 442
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.79 E-value=55 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
..+++|+|+|+|.+|.-.++++...|.+.+
T Consensus 172 ~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vt 201 (466)
T PRK06115 172 EVPKHLVVIGAGVIGLELGSVWRRLGAQVT 201 (466)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 346899999999999988888888888743
No 443
>PLN03000 amine oxidase
Probab=32.74 E-value=59 Score=33.58 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
...+|+|+|+|..|+.+...++..|.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V 210 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKV 210 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcE
Confidence 3578999999999999999999888873
No 444
>PLN02612 phytoene desaturase
Probab=32.74 E-value=59 Score=31.66 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
-.++.+|+|+|+|..|+.+...+...|.+
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~ 118 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHK 118 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCe
Confidence 34567899999999999999998888876
No 445
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=32.66 E-value=25 Score=26.85 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.2
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (256)
.+.|-.++|+|.--|......++||+|++..+.
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~sy~ 91 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIMSYA 91 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEEEcc
Confidence 467888899999999999999999999876653
No 446
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=32.52 E-value=1e+02 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=20.8
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHH
Q 025173 201 WKVAEVEEGSTVAIFGLGAVGLSVLIR 227 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~GaG~vG~~aiql 227 (256)
.+..+.....+|+|+|+|.+|...++.
T Consensus 76 ~~~l~~~~~~rV~IIGaG~iG~~l~~~ 102 (213)
T PRK05472 76 EKILGLDRTWNVALVGAGNLGRALLNY 102 (213)
T ss_pred HHHhCCCCCcEEEEECCCHHHHHHHHh
Confidence 344455667789999999999887765
No 447
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=32.46 E-value=48 Score=35.46 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
+-|.+|.|+|.|+.|++|+.-+..+|..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~ 1810 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHT 1810 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcE
Confidence 5689999999999999999999999887
No 448
>PLN02661 Putative thiazole synthesis
Probab=32.40 E-value=58 Score=29.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=19.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLK-FTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~-G~~ 234 (256)
-.|+|+|+|+.|+.++..+... |.+
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~k 118 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVK 118 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCe
Confidence 4689999999999988888754 555
No 449
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=32.40 E-value=59 Score=25.29 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEECC-CHHHHHHHHHHHHcC
Q 025173 212 VAIFGL-GAVGLSVLIRIHLKF 232 (256)
Q Consensus 212 VlI~Ga-G~vG~~aiqla~~~G 232 (256)
|.|.|+ |.+|..++.+.+...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~ 22 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP 22 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT
T ss_pred CEEEcCCcHHHHHHHHHHHhCC
Confidence 678999 999999999999876
No 450
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.34 E-value=71 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCC
Q 025173 212 VAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 212 VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
|+|.|.|.+|...++.++..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~ 23 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGID 23 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCE
Confidence 67889999999999999985533
No 451
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=32.27 E-value=93 Score=28.72 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-++..++..|...
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~V 163 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNV 163 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcE
Confidence 4679999999999998888888888763
No 452
>PRK13529 malate dehydrogenase; Provisional
Probab=32.24 E-value=1.4e+02 Score=29.22 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=26.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH----cCC------CccceecceeeEeec
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHL----KFT------RHTPHILPTLILMSE 248 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~----~G~------~~~~~~~~~~v~~~~ 248 (256)
...+|++.|||..|...+.++.. .|. ++...+........+
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~ 344 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD 344 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC
Confidence 45788999999888776666654 576 344555555444443
No 453
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=32.22 E-value=55 Score=30.93 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
+++|+|+|+|.+|+-+++.++..|.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 579999999999999888888888774
No 454
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=32.22 E-value=33 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.4
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (256)
.++|-.++|+|.--|....-.++||+|++..+.
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy~ 91 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASYV 91 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECC
Confidence 467888999999999988889999999887653
No 455
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.21 E-value=98 Score=27.57 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=35.3
Q ss_pred hhchhhHHHHHHHHHHhcCCC-CCCEEEEECCC-HHHHHHHHHHHHcCCCc
Q 025173 187 CLLSCGVSTGLGAAWKVAEVE-EGSTVAIFGLG-AVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 187 a~l~~~~~ta~~~l~~~~~~~-~g~~VlI~GaG-~vG~~aiqla~~~G~~~ 235 (256)
...+|.....+. +.+..++. .|.+|+|+|-| .+|.-...++...|+..
T Consensus 142 ~~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV 191 (287)
T PRK14176 142 GLVPCTPHGVIR-ALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATV 191 (287)
T ss_pred CCCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEE
Confidence 345665554444 44556654 79999999984 69999999999999874
No 456
>PRK06116 glutathione reductase; Validated
Probab=32.17 E-value=58 Score=30.40 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=23.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|.-.++.+...|.+.
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~~V 193 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGSET 193 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 3579999999999998888888888773
No 457
>PLN02852 ferredoxin-NADP+ reductase
Probab=31.70 E-value=70 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc
Q 025173 206 VEEGSTVAIFGLGAVGLSVLIRIHLK 231 (256)
Q Consensus 206 ~~~g~~VlI~GaG~vG~~aiqla~~~ 231 (256)
+..|++|+|+|+|.+|+-++..+...
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 45789999999999998877776554
No 458
>PLN02487 zeta-carotene desaturase
Probab=31.69 E-value=70 Score=31.34 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+|+|+|+|..|+.+...+...|..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~ 100 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHE 100 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCe
Confidence 3899999999999998888888876
No 459
>PHA01634 hypothetical protein
Probab=31.51 E-value=47 Score=26.17 Aligned_cols=28 Identities=25% Similarity=0.244 Sum_probs=19.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
.+.+|+++|| .+|..++-++ ++||+.++
T Consensus 28 k~KtV~dIGA-~iGdSaiYF~-l~GAK~Vv 55 (156)
T PHA01634 28 YQRTIQIVGA-DCGSSALYFL-LRGASFVV 55 (156)
T ss_pred cCCEEEEecC-CccchhhHHh-hcCccEEE
Confidence 5789999986 4556666655 67888533
No 460
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=31.01 E-value=93 Score=21.40 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=23.0
Q ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGL--GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~Ga--G~vG~~aiqla~~~G~~ 234 (256)
.++.+||+|+ -+...+|.++|+..|..
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~ 59 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVP 59 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 3678899964 58899999999999887
No 461
>PRK08291 ectoine utilization protein EutC; Validated
Probab=30.79 E-value=1.8e+02 Score=26.04 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHL-KFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~-~G~~ 234 (256)
+...+++|+|+|..|.+.+..+.. .+.+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIR 158 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 345689999999999887766654 4544
No 462
>PLN02546 glutathione reductase
Probab=30.63 E-value=65 Score=31.42 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=22.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|+|+|+|+-|+.+...|...|.+
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~ 104 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGAS 104 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe
Confidence 489999999999999999999998
No 463
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.47 E-value=1.1e+02 Score=27.39 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.0
Q ss_pred hchhhHHHHHHHHHHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 188 LLSCGVSTGLGAAWKVAEVE-EGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.+||.....+. +.+..++. .|.+|.|+|. +.+|.-...++...|+..
T Consensus 138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatV 186 (301)
T PRK14194 138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSV 186 (301)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEE
Confidence 45665554444 44555553 6999999999 599999999999999873
No 464
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=30.30 E-value=72 Score=30.37 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..+++|+|+|+|.+|+-++..+...|+.
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~ 308 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAA 308 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 5789999999999999987777777775
No 465
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=30.18 E-value=58 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.4
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCC
Q 025173 211 TVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 211 ~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.|||+|+|..|+.|..-|...|++
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~ 434 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQ 434 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc
Confidence 489999999999988888888987
No 466
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=30.17 E-value=60 Score=30.34 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=23.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.+++|+|+|+|.+|+-.+++++..|.+.
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~~V 192 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGVQV 192 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeE
Confidence 3678999999999998888888888763
No 467
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=30.14 E-value=41 Score=26.07 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=28.3
Q ss_pred eeeeeeeeEEEEEccCCCcccCCCCEEeeeccc
Q 025173 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (256)
Q Consensus 79 ~~~G~e~vG~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (256)
.++|-.++|+|.--|......++||+|++..+.
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~ 91 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAYA 91 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 467888999999989888889999999987654
No 468
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=29.82 E-value=1.2e+02 Score=25.54 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred hchhhHHHHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 188 LLSCGVSTGLGAAWKVAEV----------EEGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.+||.....+. +.+..++ -.|.+|+|+|- ..+|.=...++...|+..
T Consensus 32 ~~PCTp~avi~-lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtV 89 (197)
T cd01079 32 ILPCTPLAIVK-ILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARV 89 (197)
T ss_pred ccCCCHHHHHH-HHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEE
Confidence 45655554444 3444444 47999999998 689999999998889873
No 469
>PLN02602 lactate dehydrogenase
Probab=29.49 E-value=1.2e+02 Score=27.75 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+|.|+|+|.+|...+..+...+..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~ 62 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA 62 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC
Confidence 6899999999999988888777654
No 470
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=29.47 E-value=70 Score=30.92 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.-.+++||+|+|..|+.|..=+..+|..
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~ 149 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFK 149 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCe
Confidence 4578999999999998888777788888
No 471
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=29.41 E-value=87 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+|.|+|+|.+|.-.++.+...|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~ 360 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLK 360 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCc
Confidence 4799999999998888887778988
No 472
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.40 E-value=66 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=23.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.++|+|+|+|.+|.-+++.++..|.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~V 198 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEV 198 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 478999999999998888888888773
No 473
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=29.38 E-value=88 Score=31.55 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 210 STVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 210 ~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.+|.|+|+|.+|.-.++.+-..|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~ 338 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP 338 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe
Confidence 3799999999998888887788988
No 474
>PRK11761 cysM cysteine synthase B; Provisional
Probab=29.36 E-value=1.7e+02 Score=25.76 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=30.3
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceec
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHIL 240 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~ 240 (256)
+...+.+|++|+....|..|++....|+..|.+-++.+.
T Consensus 56 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p 94 (296)
T PRK11761 56 KRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMP 94 (296)
T ss_pred HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEEC
Confidence 445567888887777799999999999999998544433
No 475
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.31 E-value=2e+02 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFG-LGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~G-aG~vG~~aiqla~~~G~~ 234 (256)
...+|.|+| .|.+|......++..|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~ 124 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQ 124 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCe
Confidence 346899998 699999999999988866
No 476
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=29.20 E-value=75 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=28.7
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 204 AEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 204 ~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
.-+++||+|||.-.|..|.-..++|+..|+..
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v 106 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERYGAEV 106 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHhCCce
Confidence 34579999999999999999999999999983
No 477
>PRK14727 putative mercuric reductase; Provisional
Probab=29.04 E-value=59 Score=30.76 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=24.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTP 237 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~ 237 (256)
.++|+|+|+|.+|.-.++.++..|.+.++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtl 216 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTI 216 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999988888888887433
No 478
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=28.93 E-value=1.8e+02 Score=26.04 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIH-LKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~-~~G~~ 234 (256)
+...+++|+|+|..+...+..+. ..+.+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~ 155 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIR 155 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCcc
Confidence 34568999999999988777765 45555
No 479
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=28.77 E-value=90 Score=30.06 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH---HHHHHcCCC
Q 025173 191 CGVSTGLGAAWKVAEVEEGSTVAIFGLGAVGLSVL---IRIHLKFTR 234 (256)
Q Consensus 191 ~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~ai---qla~~~G~~ 234 (256)
..+.|...++--...+..|++++|+|..++|..++ ++++..++.
T Consensus 144 epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~d 190 (497)
T TIGR03324 144 VPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRN 190 (497)
T ss_pred chhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHhcCCC
Confidence 35556666554556788999999998655555443 677776665
No 480
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=28.68 E-value=1.2e+02 Score=27.41 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=16.1
Q ss_pred CcccCCCCEEeeecccCCCC
Q 025173 96 VEEVREGDLVLPVFQGDCGE 115 (256)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~ 115 (256)
-..+++||+|...+...|..
T Consensus 314 ~~~~~vGd~v~~~p~h~c~t 333 (358)
T cd06819 314 AAPLKIGDRLELVPGHCDPT 333 (358)
T ss_pred CCCCCCCCEEEEECCCcCcc
Confidence 34699999999998877764
No 481
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.42 E-value=1.2e+02 Score=27.01 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=34.1
Q ss_pred hchhhHHHHHHHHHHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCc
Q 025173 188 LLSCGVSTGLGAAWKVAEVE-EGSTVAIFGL-GAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 188 ~l~~~~~ta~~~l~~~~~~~-~g~~VlI~Ga-G~vG~~aiqla~~~G~~~ 235 (256)
.+||.....+. +.+..++. .|.+|+|+|. ..+|.-...++...|+..
T Consensus 137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV 185 (285)
T PRK14189 137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATV 185 (285)
T ss_pred CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEE
Confidence 45655444444 44555554 6899999998 566999999999999884
No 482
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=28.37 E-value=1.8e+02 Score=25.54 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceec
Q 025173 201 WKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHIL 240 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~ 240 (256)
.+...+.+|+.|+....|..|.+....++..|.+-++.+.
T Consensus 51 ~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p 90 (290)
T TIGR01138 51 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMP 90 (290)
T ss_pred HHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEEC
Confidence 3455567888877766799999999999999998544433
No 483
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=28.06 E-value=94 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCCCEEEEECC-CHHHHH--HHHHHHHcCCC
Q 025173 207 EEGSTVAIFGL-GAVGLS--VLIRIHLKFTR 234 (256)
Q Consensus 207 ~~g~~VlI~Ga-G~vG~~--aiqla~~~G~~ 234 (256)
..++++||+|+ +++|++ ..+.+ ..|+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~ 68 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGAD 68 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCe
Confidence 44678999998 899999 45555 77887
No 484
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=28.04 E-value=44 Score=25.84 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
.-+|-|+|+|-+|......++..|..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~ 35 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHE 35 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCe
Confidence 34689999999999999999888876
No 485
>PLN02565 cysteine synthase
Probab=27.78 E-value=1.5e+02 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=29.3
Q ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCccceec
Q 025173 201 WKVAEVEEGSTVAIFG-LGAVGLSVLIRIHLKFTRHTPHIL 240 (256)
Q Consensus 201 ~~~~~~~~g~~VlI~G-aG~vG~~aiqla~~~G~~~~~~~~ 240 (256)
.+...+.+|++.+|.. .|..|++....++..|.+-++.+.
T Consensus 58 ~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp 98 (322)
T PLN02565 58 EEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMP 98 (322)
T ss_pred HHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeC
Confidence 3445567886655654 599999999999999998544433
No 486
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=27.63 E-value=1.8e+02 Score=24.15 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Q 025173 200 AWKVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFT 233 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~ 233 (256)
+.....++++++||=+|+|. |..++.+++..+.
T Consensus 69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~ 101 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGR 101 (215)
T ss_pred HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCC
Confidence 34566789999999998743 5666677776553
No 487
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=27.48 E-value=68 Score=29.23 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G 232 (256)
..|++|.|+|.|.+|...++-++..|
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 35889999999999999999999877
No 488
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=27.37 E-value=87 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEECC-CHHHHHHHHHHHH-cCCC
Q 025173 211 TVAIFGL-GAVGLSVLIRIHL-KFTR 234 (256)
Q Consensus 211 ~VlI~Ga-G~vG~~aiqla~~-~G~~ 234 (256)
+|+|+|+ |-+|...++.+.. .+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~ 27 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFE 27 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcE
Confidence 5899999 9999999999988 3443
No 489
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=27.34 E-value=1.3e+02 Score=24.71 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=22.4
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKF 232 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G 232 (256)
......++.+||-+|+|. |..+..+++..+
T Consensus 45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~ 74 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVG 74 (239)
T ss_pred HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcC
Confidence 344556788999999877 777788877664
No 490
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=27.13 E-value=1.1e+02 Score=28.56 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~ 234 (256)
..++|+|+|+|.+|.-++..++..|.+
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~ 195 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSK 195 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 347899999999999888888888876
No 491
>PLN02507 glutathione reductase
Probab=27.00 E-value=72 Score=30.50 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=24.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
+++|+|+|+|.+|.-.+..++..|.+.++.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 232 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLF 232 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 579999999999988888888888774433
No 492
>PRK13748 putative mercuric reductase; Provisional
Probab=26.87 E-value=75 Score=30.60 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=25.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCccce
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHTPH 238 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~ 238 (256)
.+++|+|+|+|.+|+-.++.+...|.+.++.
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli 299 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLGSKVTIL 299 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 3589999999999998888888888874333
No 493
>PRK10717 cysteine synthase A; Provisional
Probab=26.85 E-value=2e+02 Score=25.76 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=30.0
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCccceec
Q 025173 202 KVAEVEEGSTVAIFGLGAVGLSVLIRIHLKFTRHTPHIL 240 (256)
Q Consensus 202 ~~~~~~~g~~VlI~GaG~vG~~aiqla~~~G~~~~~~~~ 240 (256)
....+++|++|+....|..|+++...|+..|..-++.+.
T Consensus 57 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p 95 (330)
T PRK10717 57 KRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMP 95 (330)
T ss_pred HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeC
Confidence 445567888877767799999999999999988544433
No 494
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=26.29 E-value=2.4e+02 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
.+++|+|+|+|.+|.-++..++..|.+.+
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt 176 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVR 176 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEE
Confidence 46899999999999988888888887633
No 495
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=25.84 E-value=1.3e+02 Score=25.48 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHhcCCCCCCEEEEECC---CHHHHHHHHHHHHcCCC
Q 025173 200 AWKVAEVEEGSTVAIFGL---GAVGLSVLIRIHLKFTR 234 (256)
Q Consensus 200 l~~~~~~~~g~~VlI~Ga---G~vG~~aiqla~~~G~~ 234 (256)
+..+.+++++|.++|+.. -+++.-+..++|..|+.
T Consensus 96 ~l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~ 133 (243)
T COG4821 96 FLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAK 133 (243)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCe
Confidence 346788999999888843 48899999999999999
No 496
>PRK00811 spermidine synthase; Provisional
Probab=25.60 E-value=72 Score=28.04 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 207 EEGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 207 ~~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
...++||++|+|. |..+..+++..+..+
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~ 102 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEK 102 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCE
Confidence 3467899998754 666777777656553
No 497
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=25.42 E-value=1e+02 Score=32.46 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCC
Q 025173 205 EVEEGSTVAIFGLGAVGLSVLIRIHLK-FTR 234 (256)
Q Consensus 205 ~~~~g~~VlI~GaG~vG~~aiqla~~~-G~~ 234 (256)
.+..|++|+|+|+|.+|.-++..+... |+.
T Consensus 664 ~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGak 694 (1019)
T PRK09853 664 ALKLGKHVVVVGGGNTAMDAARAALRVPGVE 694 (1019)
T ss_pred cccCCCEEEEECCChHHHHHHHHHHhcCCCc
Confidence 456799999999999998888777666 444
No 498
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=25.28 E-value=82 Score=29.70 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcc
Q 025173 209 GSTVAIFGLGAVGLSVLIRIHLKFTRHT 236 (256)
Q Consensus 209 g~~VlI~GaG~vG~~aiqla~~~G~~~~ 236 (256)
+++++|+|+|.+|.-.++.++..|.+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vt 204 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVT 204 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 4789999999999888888888887733
No 499
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=25.18 E-value=87 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCc
Q 025173 208 EGSTVAIFGLGAVGLSVLIRIHLKFTRH 235 (256)
Q Consensus 208 ~g~~VlI~GaG~vG~~aiqla~~~G~~~ 235 (256)
..++|+|+|+|.+|.-.+..++..|.+.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~V 184 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKV 184 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeE
Confidence 3468999999999998888888888773
No 500
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=25.14 E-value=1.2e+02 Score=25.81 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCCCEEEEE--C-C-CHHHHHHHHHHHHcCCCccceecc
Q 025173 207 EEGSTVAIF--G-L-GAVGLSVLIRIHLKFTRHTPHILP 241 (256)
Q Consensus 207 ~~g~~VlI~--G-a-G~vG~~aiqla~~~G~~~~~~~~~ 241 (256)
.+|++|+|. | + |..-.+|+|.++..+...++...|
T Consensus 122 ~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220)
T COG1926 122 LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220)
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcc
Confidence 367888777 6 3 788899999999999986554443
Done!