BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025174
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex
Methyltransferase Mtq2-Trm112
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 36/193 (18%)
Query: 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD 77
YEP +D++ L+DAL + + + + +++G +G + L ++TD
Sbjct: 4 YEPGEDTYTLMDALEREGLEMK-----IVLDLGTSTGVITEQLR-------KRNTVVSTD 51
Query: 78 INPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREG 137
+N A LE+H +L+ D+ + + VDV+V NPPYVP +D +
Sbjct: 52 LNIRA-------LESHR-GGNLVRADLLCSINQES---VDVVVFNPPYVPDTDDPI---- 96
Query: 138 IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197
GG GR VID+ + + G LYL+ + AN P ++ ++ E+GY RI+
Sbjct: 97 ----IGGGYLGREVIDRFVDAV-----TVGMLYLLVIEANRPKEVLARLEERGYGTRILK 147
Query: 198 QRSTEEENLHIIK 210
R E ++IIK
Sbjct: 148 VRKILGETVYIIK 160
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D ++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DXIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 29 DALLADRINLVEHHP--VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+ L+ + I ++ P ++VG GSG + S+AL PGV A D++ A+ V
Sbjct: 15 EVLVEEAIRFLKRXPSGTRVIDVGTGSGCIAVSIALA----CPGVSVTAVDLSXDALAVA 70
Query: 87 RKTLEAHNVHADLINTDIASGLEKRL--AGLVDVMVVNPPYVPTPE 130
R+ E D D L +R +V NPPY+PT E
Sbjct: 71 RRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGE 116
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI--NTDIA 105
++G GSG + S+A + ATD++ AVE+ RK E H V +
Sbjct: 127 DIGTGSGAIGVSVA-----KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 181
Query: 106 SGLEKRLAGLVDVMVVNPPYVPT----PEDEVGREGIASAWAGGENG 148
+++ A +++++ NPPYV + P+D + A GGE+G
Sbjct: 182 EPFKEKFAS-IEMILSNPPYVKSSAHLPKDVLFEP--PEALFGGEDG 225
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI--NTDIA 105
++G GSG + S+A + ATD++ AVE+ RK E H V +
Sbjct: 129 DIGTGSGAIGVSVA-----KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 183
Query: 106 SGLEKRLAGLVDVMVVNPPYVPT----PEDEVGREGIASAWAGGENG 148
+++ A +++++ NPPYV + P+D + A GGE+G
Sbjct: 184 EPFKEKFAS-IEMILSNPPYVKSSAHLPKDVLFEP--PEALFGGEDG 227
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97
LVE +L M G G+ + L + G D N +A+E+ R+ +E +NV A
Sbjct: 288 LVEGEKILDMYSGVGT------FGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDA 339
Query: 98 DLINTDIASGLEKRLAGLVDVMVVNPP 124
+ ++AS E + G D ++V+PP
Sbjct: 340 EF---EVASDREVSVKGF-DTVIVDPP 362
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI--NTDIA 105
++G GSG + S+A V ATD++ AVE+ RK E H V +
Sbjct: 139 DIGTGSGAIGVSVAKFSDAIV-----FATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 193
Query: 106 SGLEKRLAGLVDVMVVNPPYVPT----PEDEVGREGIASAWAGGENG 148
+++ A ++ ++ NPPYV + P+D + A GGE+G
Sbjct: 194 EPFKEKFAS-IEXILSNPPYVKSSAHLPKDVLFEP--PEALFGGEDG 237
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97
LVE +L M G G+ + L + G D N +A+E+ R+ +E +NV A
Sbjct: 288 LVEGEKILDMYSGVGT------FGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDA 339
Query: 98 DLINTDIASGLEKRLAGLVDVMVVNPP 124
+ ++AS E + G D ++V+PP
Sbjct: 340 EF---EVASDREVSVKGF-DTVIVDPP 362
>pdb|1O9G|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 1.5a
Length = 250
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
PV + CGSGY++T L L+ + + Q IA+D++P +E+ K L
Sbjct: 52 PVTLWDPCCGSGYLLTVLGLLHRRSL--RQVIASDVDPAPLELAAKNL 97
>pdb|1O9H|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 2.4a
Length = 250
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
PV + CGSGY++T L L+ + + Q IA+D++P +E+ K L
Sbjct: 52 PVTLWDPCCGSGYLLTVLGLLHRRSL--RQVIASDVDPAPLELAAKNL 97
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81
D +VDA++ EH P + +E+G GY +A +L PG + I +INP
Sbjct: 46 DKKGKIVDAVIQ------EHQPSVLLELGAYCGYSAVRMARLLS---PGARLITIEINPD 96
Query: 82 AVEVTRKTLEAHNV 95
+T++ ++ V
Sbjct: 97 CAAITQRMVDFAGV 110
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81
D +VDA++ EH P + +E+G GY +A +L PG + I +INP
Sbjct: 43 DKKGKIVDAVIQ------EHQPSVLLELGAYCGYSAVRMARLLS---PGARLITIEINPD 93
Query: 82 AVEVTRKTLEAHNV 95
+T++ ++ V
Sbjct: 94 CAAITQRMVDFAGV 107
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81
D +VDA++ EH P + +E+G GY +A +L PG + I +INP
Sbjct: 43 DKKGKIVDAVIQ------EHQPSVLLELGAYCGYSAVRMARLLS---PGARLITIEINPD 93
Query: 82 AVEVTRKTLE 91
+T++ ++
Sbjct: 94 CAAITQRMVD 103
>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
Length = 224
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA-TDINPYAVEVTRKTLEAHNVHADLIN 101
P+ CMEV S +I+ L LG+++ Y++ TD +A++ +K L+ N A L
Sbjct: 14 PIECMEV---SEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKN--ALLWE 68
Query: 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVG 134
T E + VMV N V PEDE G
Sbjct: 69 TKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAG 101
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
E+ P L +E+G GY +A +L PG + + +INP +T++ L
Sbjct: 56 EYSPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEINPDCAAITQQML 103
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 51 CGSG-YVITSLALMLGQEVPGVQ--------YIATDINPYAVEVTRKTLEAHNVHADLIN 101
CG+G +++T+ GQ + D P V + L H + D
Sbjct: 180 CGTGGFLLTAYDYXKGQSASKEKRDFLRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSP 239
Query: 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
LEK + LVDV++ NPP+ P V
Sbjct: 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSV 271
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
E+ P L +E+G GY +A +L PG + + ++NP +T++ L
Sbjct: 56 EYSPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEMNPDYAAITQQML 103
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
E+ P L +E+G GY +A +L PG + + ++NP +T++ L
Sbjct: 58 EYSPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEMNPDYAAITQQML 105
>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|B Chain B, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|C Chain C, Human Methyltransferase 10 Domain Containing Protein
Length = 254
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI------ 100
+++G G+ + +LG + G ++AT+++ +K +E +N+ +DLI
Sbjct: 70 IDIGTGASCIYP----LLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-SDLIKVVKVP 124
Query: 101 -NTDIASGLEKRLAGLVDVMVVNPPYV 126
T + L++ + D + NPP+
Sbjct: 125 QKTLLMDALKEESEIIYDFCMCNPPFF 151
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 47 MEVGCGSGYVITSL-ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105
+EV G G + + + AL+ Q V + Y ATD NP A+E + LE +H D A
Sbjct: 1245 VEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLE--QLHVTQGQWDPA 1302
Query: 106 SGLEKRLAGLVDVMVVN 122
+ L G D++V N
Sbjct: 1303 NPAPGSL-GKADLLVCN 1318
>pdb|1TLV|A Chain A, Structure Of The Native And Inactive Lict Prd From B.
Subtilis
Length = 221
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA-TDINPYAVEVTRKTLEAHNVHADLIN 101
P+ MEV S +I+ L LG+++ Y++ TD +A++ +K L+ N A L
Sbjct: 14 PIEXMEV---SEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIKN--ALLWE 68
Query: 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVG 134
T E + VMV N V PEDE G
Sbjct: 69 TKRLYKDEFAIGKEALVMVKNKTGVSLPEDEAG 101
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 30 ALLADRINLVEHHPVLCMEVGCGSG----------YVITSLALMLGQ------EVPGVQY 73
LL D++ VE P+LC V G +V+ S LG G++
Sbjct: 134 GLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRV 193
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
A DI+ + + R+ V + +TD A+ L+K + G V+V
Sbjct: 194 AAVDIDDAKLNLARRL--GAEVAVNARDTDPAAWLQKEIGGAHGVLV 238
>pdb|1PWX|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWX|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With Bromide
pdb|1PWZ|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PWZ|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With (R)-Styrene Oxide And Chloride
pdb|1PX0|A Chain A, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|B Chain B, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|C Chain C, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1PX0|D Chain D, Crystal Structure Of The Haloalcohol Dehalogenase Hhec
Complexed With The Haloalcohol Mimic (R)-1-Para-Nitro-
Phenyl-2-Azido-Ethanol
pdb|1ZMT|A Chain A, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|B Chain B, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|C Chain C, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZMT|D Chain D, Structure Of Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With
(R)-Para-Nitro Styrene Oxide, With A Water Molecule In
The Halide-Binding Site
pdb|1ZO8|A Chain A, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|B Chain B, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|C Chain C, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|D Chain D, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|E Chain E, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|F Chain F, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|G Chain G, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|H Chain H, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|I Chain I, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|J Chain J, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|K Chain K, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|L Chain L, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|M Chain M, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|N Chain N, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|O Chain O, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
pdb|1ZO8|P Chain P, X-Ray Structure Of The Haloalcohol Dehalogenase Hhec Of
Agrobacterium Radiobacter Ad1 In Complex With (S)-Para-
Nitrostyrene Oxide, With A Water Molecule In The Halide-
Binding Site
Length = 254
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 78 INPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE 130
I+ YAVE R +EA + + +AS ++KR +G + + P+ P E
Sbjct: 89 IDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKE 141
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95
++VGCG+G V LA + + A D NP A+ T L+ H +
Sbjct: 38 VDVGCGTGGVTLELAGRV------RRVYAIDRNPEAISTTEXNLQRHGL 80
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 284 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 327
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 329
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 257 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 300
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
W N R ++I+ DKL+ G L ++T A PS + L
Sbjct: 257 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLL 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,506,498
Number of Sequences: 62578
Number of extensions: 305921
Number of successful extensions: 980
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 40
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)