BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025174
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y5N5|HEMK2_HUMAN HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1
PE=1 SV=3
Length = 214
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L++AL A L +C+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLNALEAAAAELAGVE--ICLEVGSGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL VD++V NPPYV TP EVG
Sbjct: 76 TDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG+NGR V+D+ P LLS +G YLVT+ N+P +I M KG
Sbjct: 136 HGIEAAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKFWRD 214
+ R +E L ++KF +
Sbjct: 196 ALSRQAGQETLSVLKFTKS 214
>sp|Q9UT94|MTQ2_SCHPO eRF1 methyltransferase catalytic subunit mtq2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mtq2 PE=3 SV=1
Length = 231
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 5 TAQIRLVSSHPEVYEPCDDSFALVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLA 61
T+Q+RL +VYEP +D+FAL+DAL D L E +L E+GCGSG + L
Sbjct: 7 TSQLRL-KEFQDVYEPAEDTFALLDALEKDAKKLRQMAEMKNLLTAEIGCGSGCASSFLK 65
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKT-LEAHNVHAD------LINTDIASGLEKRLAG 114
+ + P V ++ +DI+ A ++ T L ++ D + T G+ RL
Sbjct: 66 SGILKNKPIVHFM-SDISNSACRASKITALNNRELYKDDNGLFITVQTSFLDGI--RLGN 122
Query: 115 LVDVMVVNPPYVPTPEDEVGREG--IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
VD+++ NPPYVPT +E+ E IASAWAGG +G V +L +LS+ G Y+V
Sbjct: 123 GVDILIFNPPYVPTEFEEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDGVFYMV 182
Query: 173 TLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213
+ N IC + + G+ ++R E L I++ +R
Sbjct: 183 AVARNKLHSICEILQKDGFIVNETLKRKAGRETLSILRIYR 223
>sp|Q58338|Y928_METJA Putative protein methyltransferase MJ0928 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0928 PE=3 SV=1
Length = 197
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
HPEVYEP +DS L+ NLV+ +E+G G+G + + A +++ GV
Sbjct: 13 HPEVYEPAEDSILLLK-------NLVDVKNKDVLEIGVGTGLISIACAKKGAKKIVGV-- 63
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
DINPYAV++ ++ + +NV+ +D L + + G DV++ NPPY+PT EDE
Sbjct: 64 ---DINPYAVKLAKENAKLNNVNISFFESD----LFENVTGKFDVILFNPPYLPTSEDEK 116
Query: 134 GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193
+ A+ GG++GR ++D+ + L K G + ++ + + ++ G+
Sbjct: 117 IDSYLNFAFDGGKDGREILDRFIYELPNYLKKGGVVQILQSSLTGEKETINKLKPLGFKV 176
Query: 194 RIVVQRSTEEENLHIIKFWR 213
I + E L +I WR
Sbjct: 177 EISARLKVPFEELMVINAWR 196
>sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subunit MTQ2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MTQ2 PE=1
SV=1
Length = 221
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHH----PVLCMEVGCGSGYVITSLALMLGQEVP 69
+ +VYEP +DSF ++D L + L + ++C E+G GSG V T LM + +P
Sbjct: 11 YDKVYEPAEDSFLILDCLEKEHDFLKQKFGNRLAIVC-EIGSGSGIVTT--FLMQNKIIP 67
Query: 70 GVQ--YIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPP 124
++A DINP+A+E T T + ++ + ++I D+ S + VDV++ NPP
Sbjct: 68 QENSIHLAVDINPWALEATLDTAKLNSCKSSFLEVIQADLNSSIRN---NQVDVLIFNPP 124
Query: 125 YVPTP--EDEVGREGIASAWA-----GGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177
YVP D G A W GG++G A+ DK+L +++LS G Y++ N
Sbjct: 125 YVPAECVPDVPGSREEADQWLDLALLGGKDGMAITDKLLRQLEQILSPDGVAYILFCARN 184
Query: 178 DPSQICLQMMEK-GYAARIVVQRSTEEENLHIIKFWR 213
P ++ + ++ + +++ R E L + F R
Sbjct: 185 KPKEVIKRFVDTYKWNVKLIETRKAGWEVLSVYSFTR 221
>sp|O28490|Y1784_ARCFU Putative protein methyltransferase AF_1784 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1784 PE=3 SV=1
Length = 177
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 21/170 (12%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNVHADLINTDIA 105
+EVG GSG+V L G+ + TDI+P+A +E+ RK L D++ TDIA
Sbjct: 27 IEVGAGSGFVAERLK---GK---CKCILTTDISPFAAMELRRKGL-------DVVMTDIA 73
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGR-EGIASAWAGGENGRAVIDKILPSADKLLS 164
G+ K+ + +++ NPPYV EDE+ R + + A GG+ G VI K L S D++++
Sbjct: 74 KGIRKKFS----LVLFNPPYVEL-EDELRRGDWLDVAIDGGKKGVKVIKKFLDSLDEIMA 128
Query: 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRD 214
+RG L+ + N+P L + E+G+ IV +R E L IK W++
Sbjct: 129 ERGRAILIASSQNEPDVFDL-IDERGFRYEIVGERGLFFEKLFAIKIWKE 177
>sp|O66506|PRMC_AQUAE Release factor glutamine methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=prmC PE=3 SV=1
Length = 281
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
E+G G+G + +L + E P + ATD+NP AVE+T++ + H V D + + +
Sbjct: 118 FELGSGTGCISINLLI----ERPKLVMYATDVNPDAVELTKENAKLHKVD-DRLFVFLGN 172
Query: 107 GLEKRLAGLVDVMVVNPPYVPT------PEDEVGREGIASAWAGGENGRAVIDKILPSAD 160
E D +V NPPY+P PE EV +EG S GG+ G + I
Sbjct: 173 AFEPVKGMKFDFIVSNPPYIPENFWEILPE-EVKKEGYTSL-IGGKKGWEFYELIAEEGT 230
Query: 161 KLLSKRGWLYLVTLTANDPSQICLQMMEK 189
K L + G++ L +D ++ +++EK
Sbjct: 231 KHLKENGFIALE--IGHDQGKVVKELLEK 257
>sp|A1JJ89|RSMC_YERE8 Ribosomal RNA small subunit methyltransferase C OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmC PE=3 SV=1
Length = 347
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL A+N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LACVLAQQSPKIKWTLSDVSAAAIEASRATLAANNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=prmC PE=3 SV=1
Length = 284
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101
H +++G GSG + +LA +++P Q + + +P A+ + ++ E H L
Sbjct: 117 HAAAVLDIGVGSGCIAVALA----KQLPHAQVVGVEQSPGAIALAQRNAERHGARVTLFE 172
Query: 102 TDIASGL-EKRLAGLVDVMVVNPPYVPTP-----EDEVGREGIASAWAGGENGRAVIDKI 155
+ L ++R D++V NPPY+PT + EV +A GG +G I
Sbjct: 173 GSLFEPLGDQRF----DLIVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLI 228
Query: 156 LPSADKLLSKRGWL 169
+P+A + L+ GWL
Sbjct: 229 VPAAPEYLNPGGWL 242
>sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 34 DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
D + ++H+ +L E+G GSG + SL E+P IATDI+ A++V + H
Sbjct: 126 DSVKTIQHYNIL--ELGTGSGCIAISLLC----ELPNTSVIATDISVDAIKVAKSNTIKH 179
Query: 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGIAS----AWAGGENG 148
NV D I ++ EK D++V NPPY+ E E+ E I A E+G
Sbjct: 180 NV-TDRIQIIHSNWFEKLNKQKFDLIVSNPPYISHSEKLEMAIETINYEPHIALFAEEDG 238
Query: 149 RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191
I +A + L G + ++ + + ++C + GY
Sbjct: 239 LEAYSIIAKNAKQFLKPNGKI-ILEIGFSQAEKVCQIFLNYGY 280
>sp|Q66EW9|RSMC_YERPS Ribosomal RNA small subunit methyltransferase C OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmC
PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|B2K3H9|RSMC_YERPB Ribosomal RNA small subunit methyltransferase C OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmC
PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|B1JL46|RSMC_YERPY Ribosomal RNA small subunit methyltransferase C OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmC
PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|A4TQK1|RSMC_YERPP Ribosomal RNA small subunit methyltransferase C OS=Yersinia pestis
(strain Pestoides F) GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|Q1CN00|RSMC_YERPN Ribosomal RNA small subunit methyltransferase C OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|A9R058|RSMC_YERPG Ribosomal RNA small subunit methyltransferase C OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|Q7CG56|RSMC_YERPE Ribosomal RNA small subunit methyltransferase C OS=Yersinia pestis
GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|Q1C153|RSMC_YERPA Ribosomal RNA small subunit methyltransferase C OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|A7FMI4|RSMC_YERP3 Ribosomal RNA small subunit methyltransferase C OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmC PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
>sp|Q1II29|PRMC_KORVE Release factor glutamine methyltransferase OS=Koribacter versatilis
(strain Ellin345) GN=prmC PE=3 SV=1
Length = 280
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VG GSG + +LA +E P ++ A DI+P A+++ + + +D+ S
Sbjct: 117 LDVGTGSGCIAATLA----KEFPRMKVTAVDISPEALQIAQANAARLEAQVEFRVSDLLS 172
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPE-DEVGRE----GIASAWAGGENGRAVIDKILPSADK 161
+E D++V NPPYV E D+V R+ A GGE G +I ++ P +
Sbjct: 173 AIEP--GRQFDMIVSNPPYVGECEADKVQRQVKDFEPHCAVFGGERGMDIIKRLAPQVWE 230
Query: 162 LLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDA 221
L GW +ME GY+ V I++ W +F + D
Sbjct: 231 HLKPGGWF----------------LMEIGYSIADPVH--------EIMRDWTNFKVVPDL 266
Query: 222 KDI 224
+ I
Sbjct: 267 RGI 269
>sp|Q8KCD5|PRMC_CHLTE Release factor glutamine methyltransferase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=prmC PE=3 SV=1
Length = 294
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTD- 103
++VG GSG + +LAL L PG + A D++ A++V R+ +AH V + D
Sbjct: 128 LDVGTGSGCIAITLALRL----PGARVTAADVSADALDVARRNADAHGVSERIRFVEADA 183
Query: 104 IASGLEKRLAGLVDVMVVNPPYVPTPE 130
+++ + G D++V NPPY+P E
Sbjct: 184 LSASFADAVGGPFDLLVSNPPYIPEAE 210
>sp|Q3ILJ2|RSMC_PSEHT Ribosomal RNA small subunit methyltransferase C
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmC PE=3 SV=1
Length = 341
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 28/139 (20%)
Query: 38 LVEHHPVL----CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
L+E+ P++ ++ GCG+G + T LG + P + ++ +D++ A+ T +TL+ +
Sbjct: 195 LLENAPLIKQGTVLDFGCGAGLIAT----YLGLQNPALSFVCSDVSALAIYATTQTLKLN 250
Query: 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVID 153
N+ + + +D GL + G D+++ NPP+ GIA+ + V +
Sbjct: 251 NIKGEALLSD---GLT-NITGKFDLIISNPPF---------HTGIATDY-------TVAE 290
Query: 154 KILPSADKLLSKRGWLYLV 172
L +A + L+K G L +V
Sbjct: 291 TFLANAKQHLTKAGKLNIV 309
>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella
thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1
Length = 283
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
P V P D+ +V+A+L +R++ E + + + G GSG ++AL L +P +
Sbjct: 88 PAVLIPRQDTEVVVEAVL-ERLDPCESYTI--ADCGTGSG----AIALSLAHYLPRARVY 140
Query: 75 ATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGL-VDVMVVNPPYVPT--- 128
ATDI+P A+ V ++ + A L+ D + L GL +D +V NPPY+PT
Sbjct: 141 ATDISPAALTVAQENARKLGLAARVTLLQGDFLAPLR----GLKLDALVANPPYIPTAAL 196
Query: 129 ---PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
P D R A GG +G +LP A LL G L L
Sbjct: 197 PGLPADV--RSEPRLALDGGPDGLDAYRFLLPGAAGLLRPGGLLAL 240
>sp|Q8PC99|PRMC_XANCP Release factor glutamine methyltransferase OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=prmC PE=3 SV=1
Length = 283
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN 79
P D+ LV+ L +R+ L V +++G GSG ++AL + E P Q IATD +
Sbjct: 93 PRADTETLVELAL-ERLELTA--GVRVVDLGTGSG----AIALAIASERPQAQLIATDAS 145
Query: 80 PYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPT--PEDEVG--R 135
A+ + R AH +H + + L+ D++ NPPY+ P + G R
Sbjct: 146 ADALAIARHNAHAHGLHN--VECRLGHWLQPLAGERFDLIASNPPYIAAADPHLQQGDLR 203
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
ASA A G +G I I+ L GWL L+ + + ++ +G+AA +
Sbjct: 204 YEPASALASGSDGLDDIRLIVADTPAHLLAGGWL-LLEHGWDQGEAVAALLIARGFAA-V 261
Query: 196 VVQRSTEEENLHIIKFW 212
+ E+ + + W
Sbjct: 262 ATHQDLEQRDRVTLGQW 278
>sp|P44453|RSMC_HAEIN Ribosomal RNA small subunit methyltransferase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmC PE=3 SV=1
Length = 330
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++GCG+G VI S M+ + P Q TDI+ A+E RKTL + + ++ +D+ S
Sbjct: 195 LDLGCGAG-VIGS---MIKKRTPNAQITMTDIHAMALESARKTLSENQLQGEVYASDVFS 250
Query: 107 GLEKRLAGLVDVMVVNPPY---VPTPEDEVGREGIASAWAGGENG--RAVIDKILP 157
+E G D+++ NPP+ + T V + W + G R V + LP
Sbjct: 251 DIE----GKFDLIISNPPFHDGIDTAYRAVTELITQAKWHLNQGGELRIVANSFLP 302
>sp|A5UBC5|RSMC_HAEIE Ribosomal RNA small subunit methyltransferase C OS=Haemophilus
influenzae (strain PittEE) GN=rsmC PE=3 SV=1
Length = 330
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++GCG+G VI S M+ + VP Q TDI+ A+E RKTL + + + +D+ S
Sbjct: 195 LDLGCGAG-VIGS---MIKKRVPNAQITMTDIHAMALESARKTLSENQLQGKVYASDVFS 250
Query: 107 GLEKRLAGLVDVMVVNPPY---VPTPEDEVGREGIASAWAGGENG--RAVIDKILPSADK 161
+E G D+++ NPP+ + T V + W + G R V + LP +
Sbjct: 251 DIE----GKFDLIISNPPFHDGIDTAYRAVTELITQAKWHLNQYGELRIVANAFLPYPEL 306
Query: 162 L 162
L
Sbjct: 307 L 307
>sp|A5UFI6|RSMC_HAEIG Ribosomal RNA small subunit methyltransferase C OS=Haemophilus
influenzae (strain PittGG) GN=rsmC PE=3 SV=1
Length = 330
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++GCG+G VI S M+ + P Q TDI+ A+E RKTL + + ++ +D+ S
Sbjct: 195 LDLGCGAG-VIGS---MIKKRAPNAQITMTDIHAMALESARKTLSENQLQGEVYASDVFS 250
Query: 107 GLEKRLAGLVDVMVVNPPY---VPTPEDEVGREGIASAWAGGENG--RAVIDKILP 157
+E G D+++ NPP+ + T V + W + G R V + LP
Sbjct: 251 DIE----GKFDLIISNPPFHDGIDTAYRTVKELITQAKWHLNQGGELRIVANAFLP 302
>sp|B3GZF1|RSMC_ACTP7 Ribosomal RNA small subunit methyltransferase C OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=rsmC PE=3
SV=1
Length = 329
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 31 LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
LL N + +++GCG+G + SL Q+ ++ +DI+ A+E +R+TL
Sbjct: 178 LLLSTFNKADRLKGKVLDLGCGAGVIGASLK----QQFEKIKLTMSDIHAMALESSRRTL 233
Query: 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150
+ + ++ +D+ S +E+R D++V NPP+ +GI +A+ RA
Sbjct: 234 AENALDGTVVASDVFSNIEERF----DLIVSNPPF---------HDGIDTAY------RA 274
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTE 202
V D ++ A + L++ G L +V A P +++K + + V+ +S +
Sbjct: 275 VED-LIAQAKQRLNRGGELRIVA-NAFLPYP---DLLDKAFGSHQVIAKSNK 321
>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=prmC PE=3 SV=1
Length = 291
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++G GSG + LA + P A D + A+EV + ++ + + D + + +
Sbjct: 124 LDLGTGSGAIAIGLARLF----PAALIHAVDCSSEALEVAQVNIQKYAL-GDRVRCYVGN 178
Query: 107 GLEK--RLAGLVDVMVVNPPYVPTP-----EDEVGREGIASAWAGGENGRAVIDKILPSA 159
+ L G V +V NPPY+PT + EV A GG +G I +IL +A
Sbjct: 179 WFDPIVPLQGQVQGIVSNPPYIPTSVVATLQPEVQYHEPLLALDGGTDGLQAIRQILETA 238
Query: 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191
+ L +GWL++ + + L M + Y
Sbjct: 239 PEYLQPQGWLFIELMATQGKAVAALAMATQAY 270
>sp|A0R213|PRMC_MYCS2 Release factor glutamine methyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=prmC PE=3
SV=1
Length = 281
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 59 SLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-ASGLEKRLAGLVD 117
+LAL L Q P + IA + +P A+E R A +++ D+ A L L G VD
Sbjct: 123 ALALALAQHRPQARVIAVEDSPAALEYAR--CNAAGTSVEVLAADVTAPDLLPELDGAVD 180
Query: 118 VMVVNPPYVPTPED---EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167
++V NPPY+P + EV A A GG +G AVI I+ A + L G
Sbjct: 181 LVVSNPPYIPEGAELDPEVADHDPAHALFGGPDGMAVIRPIVALAARWLRDGG 233
>sp|Q8DPZ3|PRMC_STRR6 Release factor glutamine methyltransferase OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=prmC PE=3 SV=1
Length = 279
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105
+++G GSG ++AL L + P A DI+ A+++ R+ + N+ L +D
Sbjct: 114 VLDIGTGSG----AIALALAKNRPDWSVTAADISQEALDLARENAKNQNLQIFLKKSDCF 169
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTP-EDEVGREGIAS----AWAGGENGRAVIDKILPSAD 160
+ + ++ D++V NPPY+ E EVG + S A E+G A+ +I A
Sbjct: 170 TEISEK----YDIIVSNPPYISREDESEVGLNVLYSEPHLALFADEDGLAIYRRIAEDAT 225
Query: 161 KLLSKRGWLYL 171
L G +YL
Sbjct: 226 DYLKDSGKIYL 236
>sp|A3N3U3|RSMC_ACTP2 Ribosomal RNA small subunit methyltransferase C OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=rsmC PE=3
SV=1
Length = 329
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 31 LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
LL N + +++GCG+G + SL Q+ ++ +DI+ A+E +R+T
Sbjct: 178 LLLSTFNKADRLKGKVLDLGCGAGVIGASLK----QQFEKIKLTMSDIHAMALESSRRTF 233
Query: 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150
+ + ++ +D+ S +E+R D++V NPP+ +GI +A+ RA
Sbjct: 234 AENALDGTVVASDVFSNIEERF----DLIVSNPPF---------HDGIDTAY------RA 274
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTE 202
V D ++ A + L++ G L +V A P +++K + + V+ +S +
Sbjct: 275 VED-LIAQAKQRLNRGGELRIVA-NAFLPYP---DLLDKAFGSHQVIAKSNK 321
>sp|B0BU33|RSMC_ACTPJ Ribosomal RNA small subunit methyltransferase C OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=rsmC PE=3
SV=1
Length = 329
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 31 LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90
LL N + +++GCG+G + SL Q+ ++ +DI+ A+E +R TL
Sbjct: 178 LLLSTFNKADRLKGKVLDLGCGAGVIGASLK----QQFEKIKLTMSDIHAMALESSRHTL 233
Query: 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150
+ + ++ +D+ S +E+R D++V NPP+ +GI +A+ RA
Sbjct: 234 AENALDGTVVASDVFSNIEERF----DLIVSNPPF---------HDGIDTAY------RA 274
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTE 202
V D ++ A + L++ G L +V A P +++K + + V+ +S +
Sbjct: 275 VED-LIAQAKQRLNRGGELRIVA-NAFLPYP---DLLDKAFGSHQVIAKSNK 321
>sp|Q8G3P4|PRMC_BIFLO Release factor glutamine methyltransferase OS=Bifidobacterium
longum (strain NCC 2705) GN=prmC PE=3 SV=1
Length = 294
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---------A 92
HP + +++ GSG ++ L + EVPG Q A +++P E TR+ L A
Sbjct: 118 HPCV-VDLCAGSG----AIGLSVVSEVPGSQVWAVELSPNTAEWTRRNLSETAKKYPSIA 172
Query: 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPT---PEDEVGREGIA--SAWAGGEN 147
N H ++ + + L + L G VD+++ NPPYVP PE R+ + + G +
Sbjct: 173 SNYHLEIADATSFATLAQ-LDGTVDIVITNPPYVPQTDIPEQPEVRDWDPELALYGGSMD 231
Query: 148 GRAVIDKILPSADKLLSKRGWLYL 171
G + ++I+ A +LL G L +
Sbjct: 232 GTLIPERIIERACRLLKPGGVLVM 255
>sp|B2VH94|RSMC_ERWT9 Ribosomal RNA small subunit methyltransferase C OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmC PE=3
SV=1
Length = 342
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L+ ML P V+ TD+N A+ ++ TL A+ +
Sbjct: 191 TLKPHMKGKVLDVGCGAGV----LSAMLASFSPKVRLTLTDVNAAAIASSKATLAANQLE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
D+ +++ S + R D+++ NPP+ V T D R ++ GGE R
Sbjct: 247 GDVFASNVYSDISGRF----DMIISNPPFHDGVQTSLDAAQTLIRGAVSHLNTGGEL-RI 301
Query: 151 VIDKILP 157
V + LP
Sbjct: 302 VANAFLP 308
>sp|Q9CM79|RSMC_PASMU Ribosomal RNA small subunit methyltransferase C OS=Pasteurella
multocida (strain Pm70) GN=rsmC PE=3 SV=1
Length = 328
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++GCG+G + + Q+ P V+ DI+ A+ +++TL + + A++I +D+ S
Sbjct: 193 LDLGCGAGVI----GAYIKQQYPQVELTMADIHALALASSQRTLAENQLEAEVIASDVFS 248
Query: 107 GLEKRLAGLVDVMVVNPPY---VPTPEDEVGREGIASAW---AGGENGRAVIDKILPSAD 160
+AG D+++ NPP+ + T V + + W GGE R V + LP D
Sbjct: 249 ----NVAGKFDLIISNPPFHDGIDTAYRAVSELIMQAKWHLVPGGEL-RIVANAFLPYPD 303
Query: 161 KL 162
L
Sbjct: 304 LL 305
>sp|P75419|Y362_MYCPN Uncharacterized protein MG259 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_362 PE=1 SV=1
Length = 453
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
+ P V+ P DS AL+ + A + +++ CGSG +LA+ L + P
Sbjct: 84 FKTQPGVFIPRADSLALLKVVKAQNLKT-------AVDLCCGSG----TLAIALKKRFPH 132
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126
+ +D+NP A+++ + + V I D + L ++ +D+++ NPPY+
Sbjct: 133 LNVYGSDLNPQALQLAAQNARLNMVEVQWIEADFLAALA-QVNTPIDLIITNPPYL 187
>sp|Q1RH40|RFTRM_RICBR Bifunctional methyltransferase OS=Rickettsia bellii (strain
RML369-C) GN=prmC/trmB PE=3 SV=1
Length = 556
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105
+E+G GSG + SL L E+P Q ATDI+ A+EV + H+V D + +
Sbjct: 144 ILELGTGSGCISISLLL----ELPNSQITATDISIDAIEVAKSNAIKHDV-TDRLQIIHS 198
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGI----ASAWAGGENGRAVIDKILPSAD 160
+ E D++V NPPY+ E E+ E I + A E+G I +A
Sbjct: 199 NWFENIGKQKFDLIVSNPPYISINEKPEMAIETINYEPSIALFAEEDGLLSYKIIAENAK 258
Query: 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191
K L + G + ++ + Q+ ++ GY
Sbjct: 259 KFLKQNGKI-ILEIGYKQADQVSQIFLDHGY 288
>sp|Q8FA64|RSMC_ECOL6 Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmC PE=3
SV=1
Length = 343
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A++V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANSVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|B7NVD9|RSMC_ECO7I Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A++V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANSVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|O51215|PRMC_BORBU Release factor glutamine methyltransferase OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
GN=prmC PE=3 SV=1
Length = 286
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
+++ CGSG + S+A + ++V I +DI+ A+++ K + + I S
Sbjct: 111 LDLCCGSGCIGLSIAYYIRKKV-----ILSDISTKALQIVEKN--TKKLKLEKFVEIIHS 163
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKL 162
L K + G +D+++ NPPY+ E +++ +E + G++G + KIL A +
Sbjct: 164 NLLKCIKGKLDIIITNPPYLNKEELEIKNKIKKEPTKALLGFGKDGLNISRKILNQAKEK 223
Query: 163 LSKRGWLYL 171
LS G + +
Sbjct: 224 LSPNGLIII 232
>sp|A8G9G5|RSMC_SERP5 Ribosomal RNA small subunit methyltransferase C OS=Serratia
proteamaculans (strain 568) GN=rsmC PE=3 SV=1
Length = 347
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L +H ++VGCG+G +A +L + P ++ +D+N A+E +R TL A+ +
Sbjct: 191 TLDKHMKGKVLDVGCGAGV----MASVLSKLSPKMKLTLSDVNAAAIESSRATLAANGIE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY 125
++I +++ S + R D+++ NPP+
Sbjct: 247 GEVIVSNVYSDITGRF----DLIISNPPF 271
>sp|B5Z4Q2|RSMC_ECO5E Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|Q8X510|RSMC_ECO57 Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O157:H7 GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|B7NH38|RSMC_ECOLU Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|Q327M6|RSMC_SHIDS Ribosomal RNA small subunit methyltransferase C OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|P39406|RSMC_ECOLI Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
(strain K12) GN=rsmC PE=1 SV=3
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|B1XFI0|RSMC_ECODH Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
(strain K12 / DH10B) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|B7MNC1|RSMC_ECO45 Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|B7LEL6|RSMC_ECO55 Ribosomal RNA small subunit methyltransferase C OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
++ +++ S ++ R D+++ NPP+ + T D R + +GGE R
Sbjct: 247 GEVFASNVFSEVKGRF----DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
>sp|Q0SX40|RSMC_SHIF8 Ribosomal RNA small subunit methyltransferase C OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmC PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 37 NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
L H ++VGCG+G L++ + P ++ D++ AVE +R TL A+ V
Sbjct: 191 TLTPHTKGKVLDVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE 246
Query: 97 ADLINTDIASGLEKRLAGLVDVMVVNPPY---VPTPEDEVG---REGIASAWAGGENGRA 150
+++ +++ S + G D+++ NPP+ + T D R + +GGE R
Sbjct: 247 SEVFASNVFS----EVKGCFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL-RI 301
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTA 176
V + LP D L G+ ++ T
Sbjct: 302 VANAFLPYPDVLDETFGFHEVIAQTG 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,811,432
Number of Sequences: 539616
Number of extensions: 3974918
Number of successful extensions: 12279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 350
Number of HSP's that attempted gapping in prelim test: 12156
Number of HSP's gapped (non-prelim): 387
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)