Query 025177
Match_columns 256
No_of_seqs 176 out of 620
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 2.6E-28 5.7E-33 207.1 4.1 124 44-180 39-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 1.7E-22 3.7E-27 174.3 11.4 117 51-185 18-134 (170)
3 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.8E-21 3.9E-26 157.5 11.8 124 45-182 4-128 (128)
4 TIGR00983 3a0801s02tim23 mitoc 99.9 1.8E-21 4E-26 164.7 11.3 119 42-174 29-148 (149)
5 PTZ00236 mitochondrial import 99.9 6.2E-21 1.3E-25 163.8 14.4 116 49-182 18-133 (164)
6 KOG1652 Mitochondrial import i 99.8 2.1E-20 4.5E-25 161.7 0.1 120 42-183 12-132 (183)
7 COG5596 TIM22 Mitochondrial im 99.6 2.6E-17 5.6E-22 143.2 -0.8 158 14-181 14-189 (191)
8 KOG3324 Mitochondrial import i 99.5 1.4E-13 3E-18 121.0 7.9 123 44-181 74-197 (206)
9 PF00536 SAM_1: SAM domain (St 99.3 4.5E-12 9.8E-17 91.1 4.4 58 195-252 5-63 (64)
10 cd00166 SAM Sterile alpha moti 99.0 1.8E-10 3.9E-15 81.0 3.9 57 196-252 5-62 (63)
11 KOG4374 RNA-binding protein Bi 99.0 6.2E-11 1.3E-15 105.7 0.8 61 194-254 150-211 (216)
12 PF07647 SAM_2: SAM domain (St 98.9 4.9E-10 1.1E-14 80.8 3.0 56 196-251 7-64 (66)
13 smart00454 SAM Sterile alpha m 98.9 1E-09 2.2E-14 77.8 3.5 58 196-253 7-66 (68)
14 KOG3678 SARM protein (with ste 98.0 2.2E-05 4.8E-10 78.1 7.7 130 109-252 395-526 (832)
15 COG5596 TIM22 Mitochondrial im 97.5 1.3E-05 2.7E-10 70.6 -1.9 80 101-182 77-166 (191)
16 KOG4608 Uncharacterized conser 97.4 0.0001 2.2E-09 67.3 2.9 113 98-216 127-256 (270)
17 KOG4384 Uncharacterized SAM do 97.1 0.00029 6.3E-09 67.4 2.4 57 196-252 216-274 (361)
18 PF09597 IGR: IGR protein moti 96.8 0.00079 1.7E-08 49.0 1.9 51 199-252 2-54 (57)
19 TIGR00980 3a0801so1tim17 mitoc 92.2 1.7 3.6E-05 38.1 10.0 123 42-183 12-136 (170)
20 PF02466 Tim17: Tim17/Tim22/Ti 90.0 2.9 6.3E-05 33.5 8.8 27 46-72 1-28 (128)
21 KOG4375 Scaffold protein Shank 88.8 0.43 9.3E-06 44.5 3.4 53 198-250 215-268 (272)
22 KOG0196 Tyrosine kinase, EPH ( 87.7 0.28 6E-06 52.1 1.7 61 191-251 919-981 (996)
23 PF10247 Romo1: Reactive mitoc 87.0 0.63 1.4E-05 35.0 2.8 64 46-121 2-67 (67)
24 KOG1170 Diacylglycerol kinase 85.7 0.72 1.6E-05 49.1 3.4 58 195-252 1000-1058(1099)
25 KOG4096 Uncharacterized conser 84.8 0.86 1.9E-05 34.9 2.6 67 45-122 5-72 (75)
26 KOG4374 RNA-binding protein Bi 80.6 0.53 1.1E-05 42.7 0.1 53 198-250 120-174 (216)
27 KOG1398 Uncharacterized conser 77.4 3.2 6.9E-05 41.1 4.3 49 101-149 298-346 (460)
28 TIGR03750 conj_TIGR03750 conju 75.2 12 0.00027 30.6 6.5 65 137-208 32-96 (111)
29 PF11990 DUF3487: Protein of u 71.1 17 0.00036 30.1 6.5 64 136-206 34-97 (121)
30 PF05957 DUF883: Bacterial pro 67.3 18 0.00039 27.8 5.7 13 55-67 78-90 (94)
31 KOG3791 Predicted RNA-binding 63.6 2.8 6E-05 43.0 0.6 50 199-250 479-529 (569)
32 PF05957 DUF883: Bacterial pro 63.1 20 0.00043 27.6 5.2 38 22-65 54-92 (94)
33 PF06568 DUF1127: Domain of un 61.9 3.7 8E-05 27.3 0.7 18 222-239 18-35 (40)
34 PF03020 LEM: LEM domain; Int 56.1 4.9 0.00011 27.7 0.6 12 230-241 13-24 (43)
35 PTZ00236 mitochondrial import 55.7 58 0.0013 28.4 7.3 123 42-182 14-137 (164)
36 PF13735 tRNA_NucTran2_2: tRNA 55.4 14 0.00031 30.1 3.3 25 227-251 105-131 (149)
37 PF12597 DUF3767: Protein of u 50.0 68 0.0015 26.4 6.5 56 125-180 33-88 (118)
38 PRK10404 hypothetical protein; 49.0 24 0.00051 28.3 3.6 16 53-68 83-98 (101)
39 PF13436 Gly-zipper_OmpA: Glyc 48.0 50 0.0011 26.9 5.4 49 130-182 50-98 (118)
40 smart00540 LEM in nuclear memb 45.8 11 0.00024 26.1 1.0 20 231-250 14-38 (44)
41 PF10439 Bacteriocin_IIc: Bact 43.6 59 0.0013 23.7 4.7 23 130-152 23-45 (65)
42 PRK10132 hypothetical protein; 42.2 51 0.0011 26.8 4.6 18 51-68 87-104 (108)
43 TIGR01149 mtrG N5-methyltetrah 41.2 93 0.002 23.7 5.4 53 14-68 9-63 (70)
44 TIGR03595 Obg_CgtA_exten Obg f 39.9 23 0.00051 26.2 2.1 36 191-247 29-64 (69)
45 PRK01026 tetrahydromethanopter 37.5 1.2E+02 0.0026 23.6 5.6 53 14-68 12-66 (77)
46 PF03672 UPF0154: Uncharacteri 34.4 33 0.00072 25.6 2.1 18 51-68 4-21 (64)
47 PF09269 DUF1967: Domain of un 34.4 42 0.00092 24.8 2.7 33 193-246 31-63 (69)
48 PRK13731 conjugal transfer sur 34.1 21 0.00046 33.1 1.3 23 127-149 107-129 (243)
49 PF05818 TraT: Enterobacterial 33.4 36 0.00078 31.0 2.6 12 165-176 115-126 (215)
50 KOG3930 Uncharacterized conser 33.0 23 0.0005 34.3 1.3 44 208-251 19-63 (389)
51 KOG1899 LAR transmembrane tyro 32.5 43 0.00094 35.4 3.3 44 194-237 624-667 (861)
52 PF00465 Fe-ADH: Iron-containi 31.1 74 0.0016 30.0 4.5 49 191-242 311-359 (366)
53 cd08182 HEPD Hydroxyethylphosp 30.9 1.9E+02 0.004 27.4 7.1 50 191-243 307-356 (367)
54 COG3808 OVP1 Inorganic pyropho 30.7 1.2E+02 0.0027 31.5 6.1 74 131-238 517-593 (703)
55 PRK00523 hypothetical protein; 29.9 60 0.0013 24.9 2.9 16 85-103 41-57 (72)
56 PRK10132 hypothetical protein; 29.1 2E+02 0.0042 23.4 6.0 17 49-65 89-105 (108)
57 PRK01844 hypothetical protein; 27.5 55 0.0012 25.1 2.3 16 85-103 40-56 (72)
58 COG4803 Predicted membrane pro 27.5 53 0.0012 28.8 2.5 55 14-68 12-76 (170)
59 PF04210 MtrG: Tetrahydrometha 27.2 1.8E+02 0.0039 22.2 5.0 50 14-66 9-61 (70)
60 PRK10404 hypothetical protein; 26.5 2.3E+02 0.0049 22.7 5.9 17 49-65 83-99 (101)
61 cd08170 GlyDH Glycerol dehydro 26.3 2E+02 0.0044 26.9 6.5 45 191-235 282-326 (351)
62 PLN02975 complex I subunit 25.1 1.7E+02 0.0036 23.6 4.8 35 161-195 58-95 (97)
63 PF12732 YtxH: YtxH-like prote 25.0 76 0.0017 23.3 2.7 19 52-70 3-21 (74)
64 PF07281 INSIG: Insulin-induce 24.1 5.1E+02 0.011 23.0 9.1 65 103-172 48-117 (193)
65 PRK13299 tRNA CCA-pyrophosphor 23.7 71 0.0015 31.2 2.9 27 225-251 344-372 (394)
66 TIGR01992 PTS-IIBC-Tre PTS sys 23.7 2.4E+02 0.0051 28.2 6.7 65 104-175 345-416 (462)
67 TIGR00983 3a0801s02tim23 mitoc 23.5 3.4E+02 0.0073 23.1 6.7 35 34-70 28-62 (149)
68 KOG3225 Mitochondrial import i 22.5 77 0.0017 27.9 2.6 28 41-68 41-68 (168)
69 PRK10510 putative outer membra 22.1 2.5E+02 0.0054 25.1 5.9 39 136-175 39-77 (219)
70 PHA01516 hypothetical protein 21.9 49 0.0011 26.1 1.2 43 196-238 27-73 (98)
71 COG5150 Class 2 transcription 21.8 57 0.0012 27.7 1.6 19 194-212 67-85 (148)
72 PF14019 DUF4235: Protein of u 21.7 3.6E+02 0.0078 20.4 6.3 48 135-182 9-63 (78)
73 PF07352 Phage_Mu_Gam: Bacteri 21.7 45 0.00099 27.9 1.0 43 194-238 92-137 (149)
74 COG5457 Uncharacterized conser 20.5 28 0.0006 25.9 -0.4 15 224-238 35-49 (63)
75 COG1845 CyoC Heme/copper-type 20.2 5.9E+02 0.013 23.0 7.9 58 138-214 86-144 (209)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-28 Score=207.05 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=109.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCC--CCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 025177 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPP--PQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (256)
Q Consensus 44 ~E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~e 120 (256)
+++|+ |+++++|+|+++|+.||+|.++++.+ ++.| ...++++|+ +|+ |+.+++++++|||++|++|+++|
T Consensus 39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~-~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~E 111 (168)
T KOG3225|consen 39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQ-PNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVE 111 (168)
T ss_pred hcchhHHHHHhhccccchhhhHHhhhhhcccC-CCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHH
Confidence 34888 99999999999999999999999865 2222 122355555 676 89999999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025177 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (256)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~ 180 (256)
|++|++|.|+||+|++++||+||+.++.|.|+ ++++.+|++|++||++|++.-+
T Consensus 112 c~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp------~a~~~G~agfa~fS~~id~y~~ 165 (168)
T KOG3225|consen 112 CLIESFRAKSDWYNGAIAGCVTGGSLGYRAGP------KAAAIGCAGFAAFSAAIDKYMR 165 (168)
T ss_pred HHHHHHHhhhchhcceeeeeeeccchhhcccc------hhhhhchhHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999998 9999999999999999988644
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.88 E-value=1.7e-22 Score=174.27 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 025177 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKE 130 (256)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~ie~~RgK~ 130 (256)
..++.+|.+.|.+++++.+-...+ ..+++...++. +..+.++++++||+||++|+++||+++++|+||
T Consensus 18 G~af~~G~~~G~~~g~~~G~rnsp---------~g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~Ke 85 (170)
T TIGR00980 18 GGAFAMGTIGGSIFQAFKGFRNSP---------KGEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKE 85 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCC---------ccchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555555555555555332221 12345566654 567778899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 025177 131 DLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQST 185 (256)
Q Consensus 131 D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~ 185 (256)
|+||+++|||+||++|++++|+ ++++.+|+++++|.++|+.+|-.++-+
T Consensus 86 D~~NsiiAG~~TGa~l~~r~G~------~a~~~~aa~gg~~la~ie~~g~~~~~~ 134 (170)
T TIGR00980 86 DPWNSIISGFLTGAALAVRGGP------RAMRGSAILGACILAVIEGVGLVLTRW 134 (170)
T ss_pred chHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 999999999999999999988776443
No 3
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.86 E-value=1.8e-21 Score=157.50 Aligned_cols=124 Identities=29% Similarity=0.428 Sum_probs=100.9
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHH
Q 025177 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (256)
Q Consensus 45 E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~i 123 (256)
+.++ .+..+++.|.++|.+.+.+..... ++...+.++++...++. ++.....++.+||.++++|+++||.+
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l 75 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAISAFTR-----PPRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECAL 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444 677777777777777777743111 11112346677888876 66777789999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025177 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (256)
Q Consensus 124 e~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f 182 (256)
+++|+|||+||+++||++||++++++.|+ +.++.+++++++++.+++++++++
T Consensus 76 ~~~R~k~D~~N~~~aG~~aGa~~~~~~g~------~~~~~~~~~~a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 76 ERLRGKDDPWNSAIAGAAAGAVLGLRSGP------RGMASGAALGAAFAAAVEYYGRMP 128 (128)
T ss_pred HHhhcccccchhHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986 999999999999999999998864
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.86 E-value=1.8e-21 Score=164.74 Aligned_cols=119 Identities=24% Similarity=0.202 Sum_probs=101.9
Q ss_pred chhhH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 025177 42 LPVEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (256)
Q Consensus 42 ~~~E~-cv~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~e 120 (256)
...|+ |.++..++++|.++|.++|++......+ +..+.+.++...+++ ++.+.++++++||+|+++|+++|
T Consensus 29 ~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~-----~~~~~k~rln~~ln~---~~~~g~~~G~~~g~~g~lys~~e 100 (149)
T TIGR00983 29 GWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ-----SMPWTKLRLNQILNM---VTRRGPFWGNTLGILALVYNGIN 100 (149)
T ss_pred ChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC-----CCCcHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHH
Confidence 34454 4599999999999999999999877532 112346678888876 77888999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHH
Q 025177 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (256)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga 174 (256)
|.++.+|+|||+||+++|||+||++++.++|+ ++++.+|+..+++.++
T Consensus 101 ~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~------r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 101 SIIEATRGKHDDFNSVAAGALTGALYKSTRGL------RGMARSGALGATAAGV 148 (149)
T ss_pred HHHHHHhccchhhHhHHHHHHHHHHHHhccCh------HHHHHHhHHHHHHhhc
Confidence 99999999999999999999999999999997 8999999888877654
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.86 E-value=6.2e-21 Score=163.76 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025177 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (256)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~ie~~Rg 128 (256)
....++.+|.+.|.+++++.+....+ + ...+...++. +..+.++++++||+||++|+++||+++++|+
T Consensus 18 d~G~af~~G~vgG~~~~~~~G~rnsp----~-----g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~ 85 (164)
T PTZ00236 18 DMGGAFSMGCIGGFIWHFLKGMRNSP----K-----GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRG 85 (164)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCC----C-----cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555555555555433221 0 2234455543 5567888999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025177 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (256)
Q Consensus 129 K~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f 182 (256)
|||+||+++|||+||++|++++|+ ++++.+++..+++.++|+.++-.+
T Consensus 86 K~D~~Nsi~AG~~TGa~l~~r~G~------~~~~~~a~~Gg~~~~~ie~~~i~~ 133 (164)
T PTZ00236 86 KEDHWNAIASGFFTGGVLAIRGGW------RSAVRNAIFGGILLGIIELVSIGM 133 (164)
T ss_pred cCchHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 544444444444444444444333
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.1e-20 Score=161.67 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=97.1
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 025177 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (256)
Q Consensus 42 ~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~e 120 (256)
+.+++|- +.+++++.|.++.++-|..++..... ....+..++ .+....+++||+||++||.++
T Consensus 12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~r---------~~gg~~av~-------~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGAR---------LVGGISAVK-------MRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred eeeccccchhhhcccccceeeeeeeeecCCcccc---------cccchhhhh-------ccCcccccceeeeechhhHHH
Confidence 4677887 88999999988888888777543321 111222232 344568999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025177 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQ 183 (256)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~ 183 (256)
|++..+|+|||+||++++||+||++|+.++|+ ++++.+|+.|+++.+.++.++..++
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~------~a~~~sa~~~g~~lamieg~g~~~t 132 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGP------KAMLTSAITGGLLLAMIEGLGIQVT 132 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeeccccH------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999997 8888899999998888888877653
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.6e-17 Score=143.22 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=130.6
Q ss_pred CchhhHHHHHHHHHhcHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCC---------------
Q 025177 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPT--------------- 77 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~--------------- 77 (256)
|.+|+-+.++.. +.=+.+.+.....+...-++|+ +++.+.+.|+.+|...|.++.++.+..+.
T Consensus 14 ~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl 92 (191)
T COG5596 14 PSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL 92 (191)
T ss_pred CCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence 334555555554 3335667777888888888999 99999999999999999999887741111
Q ss_pred --CCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCC
Q 025177 78 --PPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155 (256)
Q Consensus 78 --~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~ 155 (256)
.....+++.+++.++++ +..+++..++|||+.|..|++++|+|+.+|+|||+.|++.+|++||+.+..+.|+
T Consensus 93 ~~~i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~--- 166 (191)
T COG5596 93 FSTIDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP--- 166 (191)
T ss_pred eeccccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc---
Confidence 11123467788899988 6788889999999999999999999999999999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025177 156 NPAVNAFTSGLLFAIFQGCSFKIGEM 181 (256)
Q Consensus 156 ~~~~~ai~gga~fA~fsga~~~~g~~ 181 (256)
+++..++++|++|++++.....+
T Consensus 167 ---qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 167 ---QAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred ---cccccCccchhhhhhhHHhhhhc
Confidence 99999999999999999776543
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.4e-13 Score=121.02 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=99.0
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHH
Q 025177 44 VEA-AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (256)
Q Consensus 44 ~E~-cv~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~ 122 (256)
-|+ |..|.-+++.|.++|.+.|++..-...+ +..+.++++.++++. ...+...++++.++++.+|+.+|..
T Consensus 74 ~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-----~~~~~Klr~nrILN~---~t~~G~~~gN~lG~laL~Ysaiesg 145 (206)
T KOG3324|consen 74 FENLTFGTGWAYLTGSAIGAFNGLILGLKNTE-----NGASGKLRLNRILNS---VTRRGRFWGNTLGSLALMYSAIESG 145 (206)
T ss_pred hhhhheeccchhccchhhhhHHHHHHhhhcCC-----CCCccchhHHHHhhh---ccccccccccchhHHHHHHHHHHHH
Confidence 444 4599999999999999999999765432 233456667677665 2344455999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025177 123 MKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (256)
Q Consensus 123 ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~ 181 (256)
|+..|+|||++|+++||.+||+++....|. +++..+++..+...++.. ++++
T Consensus 146 I~~~R~~dd~lnsv~AGalTGalyrs~~Gl------r~~av~ga~g~~aa~aw~-l~k~ 197 (206)
T KOG3324|consen 146 IEATRGKDDDLNSVAAGALTGALYRSTRGL------RAAAVAGAVGGTAAAAWT-LGKR 197 (206)
T ss_pred HHHhhccccchhhhhhhhhhhhhhhcCCCc------hHHHHHHHHHHHHHHHHH-Hhhh
Confidence 999999999999999999999999999996 888888888777776664 3443
No 9
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.27 E-value=4.5e-12 Score=91.13 Aligned_cols=58 Identities=31% Similarity=0.497 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
...+.++|+.+||++|..+|+++.+|..+|..+|++||++|||+. |||+||+..|+..
T Consensus 5 ~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~L 63 (64)
T PF00536_consen 5 VEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKL 63 (64)
T ss_dssp HHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999988 9999999999863
No 10
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.04 E-value=1.8e-10 Score=80.98 Aligned_cols=57 Identities=33% Similarity=0.510 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
..+.++|+.+|+++|...|++..+|...|+.+|++||+++||+. |+|+||++.|++.
T Consensus 5 ~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 5 EDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 36889999999999999999999999999999999999999998 9999999999763
No 11
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=99.02 E-value=6.2e-11 Score=105.69 Aligned_cols=61 Identities=33% Similarity=0.337 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhccC
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRSVN 254 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~~~ 254 (256)
+.+-+...|..|||.+|.+-|+.+++|+++|++|||+||++||| +.|||+||++.|...++
T Consensus 150 ~~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~ 211 (216)
T KOG4374|consen 150 LTEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRR 211 (216)
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccc
Confidence 35567889999999999999999999999999999999999999 99999999999986543
No 12
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=98.94 E-value=4.9e-10 Score=80.84 Aligned_cols=56 Identities=30% Similarity=0.480 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCC-CcccCCChhhhhhCCC-CCchhHHHHHHHhh
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~-~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~ 251 (256)
..+.++|+.+||++|..+|+...||- +.|+.+|++||+++|| ++|+|+||++.|++
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~ 64 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQE 64 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999 9999999999999999 89999999999986
No 13
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.91 E-value=1e-09 Score=77.78 Aligned_cols=58 Identities=31% Similarity=0.519 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcccCCC-hhhhhhCCC-CCchhHHHHHHHhhcc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLT-DSALRDVRI-PPGPRLLILDHIQRSV 253 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~-~~~l~~~~i-P~GpR~~il~~~~~~~ 253 (256)
..+.++|+.+|+++|...|++..+|..+|+.++ +++|+++|| ++|+|++|++.|+...
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK 66 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999 999999999 9999999999998643
No 14
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.95 E-value=2.2e-05 Score=78.10 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 025177 109 FAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRP 188 (256)
Q Consensus 109 FAv~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~~~~ 188 (256)
--.+|+.|-+.|.+++++.+|-|+..-| ||+-+++.=..+++-+.+.+..-++--+=.-+=+++.+..-+|
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseI------GAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgW--- 465 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEI------GAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGW--- 465 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCc---
Confidence 3468999999999999999999998766 5555554332233333333332222211111223333333333
Q ss_pred CcchhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhh-hCCCCCc-hhHHHHHHHhhc
Q 025177 189 TADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRIPPG-PRLLILDHIQRS 252 (256)
Q Consensus 189 ~~~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~-~~~iP~G-pR~~il~~~~~~ 252 (256)
.-+.+..++++.|+++|...|.|-++|-+-|.-|||+||| |+|.--| .||+.|.+++..
T Consensus 466 -----t~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtL 526 (832)
T KOG3678|consen 466 -----TCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTL 526 (832)
T ss_pred -----chHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 2455788999999999999999999999999999999998 7887777 799999988753
No 15
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=1.3e-05 Score=70.60 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=64.3
Q ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHH---------HHHHHHH
Q 025177 101 GPLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAI 170 (256)
Q Consensus 101 ~~~~~a~nFA-v~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~---------gga~fA~ 170 (256)
.....+.||| +||++++.+.|..+++|.++|.||....|++||..++..... .+.+.+.|. +++++++
T Consensus 77 ~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~ 154 (191)
T COG5596 77 LVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGA 154 (191)
T ss_pred cccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhh
Confidence 3445788999 999999999999999999999999999999999999988775 344566666 6777777
Q ss_pred HHHHHHHhhhhh
Q 025177 171 FQGCSFKIGEMW 182 (256)
Q Consensus 171 fsga~~~~g~~f 182 (256)
|.|+..+.-.-.
T Consensus 155 ~TGa~~~~~~g~ 166 (191)
T COG5596 155 FTGAALASSAGP 166 (191)
T ss_pred hhhHHHHhhccc
Confidence 777766554433
No 16
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0001 Score=67.35 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=76.0
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 025177 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177 (256)
Q Consensus 98 ~~~~~~~~a~nFAv~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~ 177 (256)
+..+++.++-..|++.+-|-++...+..+|+|+|.||=++||.+||+++.+.-|.++ .+.+.+.|+++.+.+++....
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g--~aa~vilG~~lG~tv~~~l~l 204 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRG--LAAGVILGALLGTTVGGLLML 204 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHH--HhhcceeehhhcchHHHHHHH
Confidence 557778888889999999999999999999999999999999999999988877521 134444444444444444443
Q ss_pred hhhhhhccCCCCcchhH-----------------HHHHHHHHhhcCchhhHHHHhh
Q 025177 178 IGEMWQSTQRPTADDVY-----------------YARTRGMLDKLGLQNYTKNFKR 216 (256)
Q Consensus 178 ~g~~f~~~~~~~~~d~~-----------------y~~~~~~l~~l~l~~y~~~f~~ 216 (256)
+...- .++ .+|.+ -++.++.++++.-+.-.+.||+
T Consensus 205 ~q~a~---~k~-vnE~~~l~~~dyk~~l~vts~~~~aie~L~q~e~~e~~~~~~ka 256 (270)
T KOG4608|consen 205 FQKAS---GKT-VNERKQLKLEDYKGRLQVTSHLPEAIESLLQEEEPENDAKKIKA 256 (270)
T ss_pred HHHHh---CCc-HHHHHHHHHHhhccccccccchHHHHHHHHHHhCchhHHHHHHH
Confidence 33322 223 12222 2456666666666655555544
No 17
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=97.08 E-value=0.00029 Score=67.36 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCchhhHHHHhh-ccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKR-GLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~-~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
..++++|..++|++|+..|-. |-=|.+++-.|+++||.|+|| -|+.|+|||.-|+..
T Consensus 216 ~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~ 274 (361)
T KOG4384|consen 216 KSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELL 274 (361)
T ss_pred hHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999755 444599999999999999999 489999999999864
No 18
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=96.76 E-value=0.00079 Score=48.99 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=44.1
Q ss_pred HHHHhhcC--chhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhhc
Q 025177 199 RGMLDKLG--LQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRS 252 (256)
Q Consensus 199 ~~~l~~l~--l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~~ 252 (256)
+++|+..| .++|.+.|+.+- +.|.-++-.+|||+|||+=-|+-||.+.++-
T Consensus 2 ~tFL~~IGR~~~~~~~kf~~~w---~~lf~~~s~~LK~~GIp~r~RryiL~~~ek~ 54 (57)
T PF09597_consen 2 ETFLKLIGRGCEEHAEKFESDW---EKLFTTSSKQLKELGIPVRQRRYILRWREKY 54 (57)
T ss_pred HHHHHHHcccHHHHHHHHHHHH---HHHHhcCHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 57888887 899999998743 7778899999999999999999999998763
No 19
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=92.21 E-value=1.7 Score=38.14 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=90.6
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhh-hhhhhhhhcCCcHHHHHHHHHHHHHHHHH
Q 025177 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVA-PFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (256)
Q Consensus 42 ~~~E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~a~nFAv~ggvysg~ 119 (256)
+++++|. .-.++.+.|++.|++-|+-+...... +...++ +.+++. .-....+.--+++.++.+.+
T Consensus 12 r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~r----------l~g~l~av~~rap---~~g~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 12 RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEK----------LVGAMRAIKTRAP---VLGGNFAVWGGLFSTIDCAV 78 (170)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccch----------hhHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 3566777 77788888888888888877645442 223333 444433 33334777778889999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025177 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQ 183 (256)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~ 183 (256)
+..-++-=-.+=+.-..+.|.+-++-=+.+.- +..++.+++++++|.++-..+.+...
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 98877766789899999999998887777665 48999999999999999888776554
No 20
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=90.01 E-value=2.9 Score=33.46 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhccc
Q 025177 46 AAI-VTATTAINGAAIGAFLGVMTQDLT 72 (256)
Q Consensus 46 ~cv-~t~~g~v~Gg~lG~~~G~~~~~~~ 72 (256)
+|. ++..+.+.|+++|+++|.+....+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 889999999999999999987763
No 21
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=88.81 E-value=0.43 Score=44.47 Aligned_cols=53 Identities=25% Similarity=0.386 Sum_probs=48.1
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHh
Q 025177 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQ 250 (256)
Q Consensus 198 ~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~ 250 (256)
+-.+|+.|+|.+|...|+.-+||=..|++|+.+|+.++|+- -|.|.-|=..++
T Consensus 215 V~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr 268 (272)
T KOG4375|consen 215 VNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALR 268 (272)
T ss_pred HHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHH
Confidence 67899999999999999999999999999999999999985 688887766655
No 22
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=87.71 E-value=0.28 Score=52.12 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhh-ccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKR-GLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~-~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
+..-|-++-++|+..++..|..+|.+ |..+++.+.-+|-+||..+||- +|+-||||+.|+.
T Consensus 919 ~~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~ 981 (996)
T KOG0196|consen 919 DFTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA 981 (996)
T ss_pred CCcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence 44458899999999999999999976 5557889999999999999998 7999999999984
No 23
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=86.98 E-value=0.63 Score=35.00 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHH
Q 025177 46 AAI-VTATTAINGAAIGAFLGVMTQDLTS-SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (256)
Q Consensus 46 ~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec 121 (256)
+|. +--++..+|+++|..+|.+....+. ....++ + ..++. ++.-....+..|+.+=++=+.++|
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~-----~-~~~~~------lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARG-----R-GLMRT------LGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCC-----c-chHhH------HhHHHhcchhHHHHHHhhhccccC
Confidence 566 6677778888777777777765543 111121 1 22222 233445566777777666555554
No 24
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=85.65 E-value=0.72 Score=49.07 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
-+.+...|+.++|.+|-..|+|--|-=..|..|--+||||+|+- -|.=|+||..|+..
T Consensus 1000 seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen 1000 SEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDL 1058 (1099)
T ss_pred HHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999985 79999999999854
No 25
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=0.86 Score=34.86 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=43.8
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHH
Q 025177 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (256)
Q Consensus 45 E~cv-~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~a~nFAv~ggvysg~ec~ 122 (256)
.+|+ |--++.++|+++|...|.+...++. ++--+. -..+++. ++.-+...+.+|+.+=++=+++.|.
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~-lR~g~~----g~~~vr~------iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAA-LRYGPR----GRGLVRT------IGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhh-eeecCC----hhHHHHH------HhHHHHhccchhhhhhhhhhheecC
Confidence 4788 8778888888888888877766553 111110 1122222 3455666788899998888888885
No 26
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=80.60 E-value=0.53 Score=42.71 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=45.1
Q ss_pred HHHHHhh-cCchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHh
Q 025177 198 TRGMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQ 250 (256)
Q Consensus 198 ~~~~l~~-l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~ 250 (256)
.++.+++ ++|++|++.|....++..++--++|..|++++| =+|-|.+.+.-+.
T Consensus 120 ~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~e 174 (216)
T KOG4374|consen 120 IQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIE 174 (216)
T ss_pred hhhHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHH
Confidence 4667777 999999999999999999999999999999987 4677777766554
No 27
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=3.2 Score=41.06 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhh
Q 025177 101 GPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLV 149 (256)
Q Consensus 101 ~~~~~a~nFAv~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tGa~l~~~ 149 (256)
.....+.-.+.+-++|.++.|++.+++-+||..|+++||++++..+..-
T Consensus 298 enlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 298 ENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 3344566678889999999999999999999999999999998766443
No 28
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.23 E-value=12 Score=30.65 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHhhcCch
Q 025177 137 VAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLGLQ 208 (256)
Q Consensus 137 iAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~~~~~~~d~~y~~~~~~l~~l~l~ 208 (256)
++|++.|..++.-.+. -+++-+|++.+.+.+.+ .-+...+..+.-.+|--.|-+++..+..+++-
T Consensus 32 ~~gl~~g~~l~~~~~~------w~~~p~~~lig~~l~v~-~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~l~ 96 (111)
T TIGR03750 32 AAGLVLGLLLALLAGP------WALIPTGALLGPILVVL-IGGKLLARLKRGKPEGYLYRKLEWKLARLGLG 96 (111)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCCchHHHHHHHHHHHHcCCC
Confidence 4455555555555553 44444555555544433 44565666665556766799999999998863
No 29
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=71.13 E-value=17 Score=30.12 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHhhcC
Q 025177 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLG 206 (256)
Q Consensus 136 iiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~~~~~~~d~~y~~~~~~l~~l~ 206 (256)
.++|++.|..++.-.|. -+++-+|+..+.+.+++ ..+...+..+.-.+|--.|-+++..|.+++
T Consensus 34 ~~~g~~~gl~la~~~g~------~a~~pt~~ll~~~~~v~-~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g 97 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGW------WAMIPTGALLGPILGVF-VGGKLLARLKRGKPEGYLYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCchhHHHHHHHHHHHHhc
Confidence 44566667777777775 33444555555444444 334555555655556667889999999876
No 30
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=67.26 E-value=18 Score=27.83 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 025177 55 INGAAIGAFLGVM 67 (256)
Q Consensus 55 v~Gg~lG~~~G~~ 67 (256)
+...++|+++|.+
T Consensus 78 giAagvG~llG~L 90 (94)
T PF05957_consen 78 GIAAGVGFLLGLL 90 (94)
T ss_pred HHHHHHHHHHHHH
Confidence 3333445555544
No 31
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=63.60 E-value=2.8 Score=42.96 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=43.6
Q ss_pred HHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHh
Q 025177 199 RGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQ 250 (256)
Q Consensus 199 ~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~ 250 (256)
-++|+.|+|.||...|+. -|-++|.+++|.+|+.+||= .|-|.|.|.-.+
T Consensus 479 p~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~g~~~~~L~~~~ 529 (569)
T KOG3791|consen 479 PEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLALGARRKLLKAFS 529 (569)
T ss_pred hHHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhhhHHHhhhcccc
Confidence 478999999999999998 89999999999999999985 567777776554
No 32
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=63.10 E-value=20 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHhcHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHHH
Q 025177 22 VQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLG 65 (256)
Q Consensus 22 ~~~~~~~~~~~~~~w~~~q~~~~E~cv-~t~~g~v~Gg~lG~~~G 65 (256)
++.+.++...+...+.+.+| + ..+++++.|+++|.+++
T Consensus 54 ~~~~~~~~~~~~~~~V~e~P------~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 54 AREQAREAAEQTEDYVRENP------WQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHHHHCh------HHHHHHHHHHHHHHHHHHh
Confidence 33344444445555555544 3 56778888899998875
No 33
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=61.85 E-value=3.7 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.0
Q ss_pred CcccCCChhhhhhCCCCC
Q 025177 222 STLPLLTDSALRDVRIPP 239 (256)
Q Consensus 222 ~~l~~~~~~~l~~~~iP~ 239 (256)
.+|.-|||..|+||||-.
T Consensus 18 ~~L~~Lsd~~L~DIGl~R 35 (40)
T PF06568_consen 18 RELAELSDRQLADIGLTR 35 (40)
T ss_pred HHHccCCHHHHHHcCCCH
Confidence 456778999999999964
No 34
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=56.06 E-value=4.9 Score=27.72 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=6.4
Q ss_pred hhhhhCCCCCch
Q 025177 230 SALRDVRIPPGP 241 (256)
Q Consensus 230 ~~l~~~~iP~Gp 241 (256)
+.|++.|+++||
T Consensus 13 ~~L~~~G~~~GP 24 (43)
T PF03020_consen 13 EELREYGEPPGP 24 (43)
T ss_dssp HCCCCCT-S---
T ss_pred HHHHHcCCCCCC
Confidence 467889999999
No 35
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=55.73 E-value=58 Score=28.44 Aligned_cols=123 Identities=12% Similarity=0.001 Sum_probs=83.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhh-hhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 025177 42 LPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQ-QVQAVAGGPLVQARNFAVITGVNAGIS 120 (256)
Q Consensus 42 ~~~E~cv~t~~g~v~Gg~lG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~a~nFAv~ggvysg~e 120 (256)
++.++|-.+...+..|+.++.++..+.++-...- ....++.++ ++..++ .+.|.--+++.++.+.++
T Consensus 14 ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~r---------l~g~l~~~~~rap~~g---~~FAv~G~~ys~~ec~~~ 81 (164)
T PTZ00236 14 RIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGER---------FSGGFYLLRKRAPILG---GNFAIWGGLFSTFDCTLQ 81 (164)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcch---------HHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 4677888444444444455555555554433321 223444444 322233 346666688888888998
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025177 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (256)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f 182 (256)
..-.+-=-.+-+.-..+.|.+-++--+.++-. .+++.+|+++|+|.++-..+.+.+
T Consensus 82 ~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~------~~a~~Gg~~~~~ie~~~i~~~~~~ 137 (164)
T PTZ00236 82 YLRGKEDHWNAIASGFFTGGVLAIRGGWRSAV------RNAIFGGILLGIIELVSIGMNRRQ 137 (164)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777777899999999999988777777663 789999999999998887777765
No 36
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=55.37 E-value=14 Score=30.07 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=17.8
Q ss_pred CChhhhhh-CCCCCchhH-HHHHHHhh
Q 025177 227 LTDSALRD-VRIPPGPRL-LILDHIQR 251 (256)
Q Consensus 227 ~~~~~l~~-~~iP~GpR~-~il~~~~~ 251 (256)
.|=.||.+ +|+||||.. +||+++..
T Consensus 105 I~G~DLi~~lg~~pGp~iG~iL~~l~~ 131 (149)
T PF13735_consen 105 INGNDLIEALGIKPGPWIGEILERLLE 131 (149)
T ss_dssp S-HHHHHHHHT--SSCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 78899999 799999996 57777754
No 37
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=49.96 E-value=68 Score=26.37 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=33.3
Q ss_pred HhhcccchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025177 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (256)
Q Consensus 125 ~~RgK~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~ 180 (256)
++..-=-..||++-|+.+|++++...-..+.++.+++=.+-.+|.+.+.+....-+
T Consensus 33 ~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 33 NVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 44444456677777777777777665543334455555555566666655544444
No 38
>PRK10404 hypothetical protein; Provisional
Probab=49.04 E-value=24 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 025177 53 TAINGAAIGAFLGVMT 68 (256)
Q Consensus 53 g~v~Gg~lG~~~G~~~ 68 (256)
+...++++|+++|++.
T Consensus 83 avGiaagvGlllG~Ll 98 (101)
T PRK10404 83 GIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666653
No 39
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=47.99 E-value=50 Score=26.91 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025177 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (256)
Q Consensus 130 ~D~~NsiiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f 182 (256)
++.....+.|.+.|++++...|... ..++.+++..+++.++.-.....+
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~----~ga~~GAa~Ga~~G~~~g~~~~~~ 98 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNG----RGAAIGAAAGAAVGAAAGAARGRY 98 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHHHHhhhhhhhh
Confidence 4444555667777888887766422 345555555555544444444443
No 40
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=45.76 E-value=11 Score=26.08 Aligned_cols=20 Identities=35% Similarity=0.770 Sum_probs=13.6
Q ss_pred hhhhCCCCCch-----hHHHHHHHh
Q 025177 231 ALRDVRIPPGP-----RLLILDHIQ 250 (256)
Q Consensus 231 ~l~~~~iP~Gp-----R~~il~~~~ 250 (256)
.|++.|+|+|| |+.....++
T Consensus 14 ~L~~~G~~~gPIt~sTR~vy~kkL~ 38 (44)
T smart00540 14 ELKQYGLPPGPITDTTRKLYEKKLR 38 (44)
T ss_pred HHHHcCCCCCCcCcchHHHHHHHHH
Confidence 45678999999 555444443
No 41
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=43.63 E-value=59 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.1
Q ss_pred cchhHHHHHHHHHHHHhhhhcCC
Q 025177 130 EDLQSSVVAAFGSGAAFSLVSGM 152 (256)
Q Consensus 130 ~D~~NsiiAG~~tGa~l~~~~G~ 152 (256)
.+.+..+++++++|++.+...|+
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 44666778888889999888886
No 42
>PRK10132 hypothetical protein; Provisional
Probab=42.24 E-value=51 Score=26.76 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 025177 51 ATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~ 68 (256)
-.+.+.+.++|+++|++.
T Consensus 87 w~svgiaagvG~llG~Ll 104 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555666666653
No 43
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=41.20 E-value=93 Score=23.72 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=31.8
Q ss_pred CchhhHHHHHHHHHhcHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHHhhh
Q 025177 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G~~~ 68 (256)
.+++.+++++.|+.++|+..+--..- ...... +---+|.+-|.++|.++-.+.
T Consensus 9 v~~~d~~~i~~rLd~iEeKVEf~~~E--~~Qr~Gkk~GRDiGIlYG~viGlli~~~~ 63 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVEFVNGE--VAQRIGKKVGRDIGILYGLVIGLILFLIY 63 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45688999999999998877643221 001111 133456677777777664443
No 44
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=39.87 E-value=23 Score=26.22 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHH
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~ 247 (256)
.++...+....|+++|++ ++|+++|+-.|=--+|-+
T Consensus 29 ~~e~~~~f~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 29 NDENLRRFARKLKKLGVE---------------------DALRKAGAKDGDTVRIGD 64 (69)
T ss_pred CHHHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcc
Confidence 445677888999999987 899999999997666654
No 45
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=37.48 E-value=1.2e+02 Score=23.57 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred CchhhHHHHHHHHHhcHHHHHHHHHhCCchhhHH--HHHHHHHHHHHHHHHHHHhhh
Q 025177 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAA--IVTATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~c--v~t~~g~v~Gg~lG~~~G~~~ 68 (256)
.+++.+++++.|+.++|+..+--..-- ..... +---+|.+-|.++|.++-++.
T Consensus 12 v~~~d~~~i~~rLD~iEeKVEftn~Ei--~Qr~GkkvGRDiGIlYG~viGlli~~i~ 66 (77)
T PRK01026 12 VDPKDFKEIQKRLDEIEEKVEFTNAEI--FQRIGKKVGRDIGILYGLVIGLLIVLVY 66 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456789999999999988776432210 00111 123356677777777665544
No 46
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=34.45 E-value=33 Score=25.63 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 025177 51 ATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~ 68 (256)
+++.+.|+++|+|++-..
T Consensus 4 ilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666655443
No 47
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=34.41 E-value=42 Score=24.80 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHH
Q 025177 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLIL 246 (256)
Q Consensus 193 ~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il 246 (256)
+-..+....|+++|++ ++|++.||..|=..+|-
T Consensus 31 e~~~rf~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig 63 (69)
T PF09269_consen 31 ESLRRFQRKLKKMGVE---------------------KALRKAGAKEGDTVRIG 63 (69)
T ss_dssp GGHHHHHHHHHHTTHH---------------------HHHHTTT--TT-EEEET
T ss_pred HHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEc
Confidence 4577889999999998 78999999998665553
No 48
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=34.12 E-value=21 Score=33.08 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=11.8
Q ss_pred hcccchhHHHHHHHHHHHHhhhh
Q 025177 127 RGKEDLQSSVVAAFGSGAAFSLV 149 (256)
Q Consensus 127 RgK~D~~NsiiAG~~tGa~l~~~ 149 (256)
|..+-+.+..++|.++|++++..
T Consensus 107 ~~a~~~L~~Gy~ga~~Gaa~G~~ 129 (243)
T PRK13731 107 RESQGWLNRGYEGAAVGAALGAG 129 (243)
T ss_pred HHHHHHHhhchhhHHHHHHhhhh
Confidence 33333444445566666655543
No 49
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=33.40 E-value=36 Score=30.99 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 025177 165 GLLFAIFQGCSF 176 (256)
Q Consensus 165 ga~fA~fsga~~ 176 (256)
|++.|++..+.+
T Consensus 115 GlaGalig~~ad 126 (215)
T PF05818_consen 115 GLAGALIGMIAD 126 (215)
T ss_pred hHHHhHHHHHHh
Confidence 555555555543
No 50
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.96 E-value=23 Score=34.32 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=40.1
Q ss_pred hhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 208 ~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
-+|.+.|-...|.++-|+-|+.+-|.||||- +|-=+-||.|++.
T Consensus 19 ~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~ 63 (389)
T KOG3930|consen 19 KKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKA 63 (389)
T ss_pred hhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHH
Confidence 3789999999999999999999999999996 6999999999973
No 51
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=32.46 E-value=43 Score=35.35 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCC
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i 237 (256)
++--+--+|...||++|-..|....||---|.+||-+||-++.+
T Consensus 624 Dv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkV 667 (861)
T KOG1899|consen 624 DVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKV 667 (861)
T ss_pred hHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHH
Confidence 45556779999999999999999999999999999999998765
No 52
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=31.05 E-value=74 Score=29.97 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
.++-+++++.++++||++. +++.-.++.+.|.-+-|..+++..+..=||
T Consensus 311 a~~~~~~l~~l~~~lglp~---~l~~~gi~~~~l~~ia~~a~~~~~~~~~P~ 359 (366)
T PF00465_consen 311 ADDAIDELRALLRSLGLPT---RLSDLGIDEEDLDEIAEAALADQRMKNNPR 359 (366)
T ss_dssp HHHHHHHHHHHHHHTT--S---SGGGGT-TGGGHHHHHHHHTCTGGGGGSSS
T ss_pred HHHHHHHHHHHHHHhCCCC---CHHHcCCCHHHHHHHHHHHHhCccccCCCC
Confidence 3456899999999999886 333335555666666666665544444444
No 53
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=30.85 E-value=1.9e+02 Score=27.39 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhH
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRL 243 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~ 243 (256)
.++.+++++++++++||+.-++.+ .++.+.+.-+.+..+++-.+.--||.
T Consensus 307 ~~~~~~~i~~l~~~~glp~~L~e~---gv~~~~~~~~a~~a~~~~~~~~~p~~ 356 (367)
T cd08182 307 AAEAAARIEALLKELGLPTRLAEY---IVTREDIARLVAEAFTPERLDNNPVD 356 (367)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHc---CCCHHHHHHHHHHHHhcccccCCCCC
Confidence 345688999999999998766655 25556666566666655433334553
No 54
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=30.69 E-value=1.2e+02 Score=31.53 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=46.7
Q ss_pred chhHH-HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCcchhHHHHHHHHHhhcCc
Q 025177 131 DLQSS-VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQ--RPTADDVYYARTRGMLDKLGL 207 (256)
Q Consensus 131 D~~Ns-iiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~~--~~~~~d~~y~~~~~~l~~l~l 207 (256)
|..|+ +++|.+-|+++-.--+. ....+++=|+.. ..+.+.+.||-.- -+-.+.++|.|..+++.
T Consensus 517 dl~np~VvaGl~~G~~lpylFs~--------~tmtAVgrAA~~-vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T---- 583 (703)
T COG3808 517 DLSNPYVVAGLLLGGLLPYLFSG--------ITMTAVGRAAME-VVEEVRRQFREIPGIMEGKAKPDYGRCVDILT---- 583 (703)
T ss_pred ecCChHHHHHHHHhhHHHHHhcc--------hHHHHHHHHHHH-HHHHHHHHHhhCCccccCCcCCchhHHHHHHH----
Confidence 44554 56888888877554432 223455555544 4556777786532 12246678999888764
Q ss_pred hhhHHHHhhccCCCCcccCCChhhhhhCCCC
Q 025177 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (256)
Q Consensus 208 ~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP 238 (256)
+++||||.||
T Consensus 584 ---------------------~aAl~eMi~P 593 (703)
T COG3808 584 ---------------------KAALKEMIIP 593 (703)
T ss_pred ---------------------HHHHHHhcch
Confidence 4789999887
No 55
>PRK00523 hypothetical protein; Provisional
Probab=29.87 E-value=60 Score=24.86 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=8.8
Q ss_pred chhhhhh-hhhhhhhcCCcH
Q 025177 85 NPDAVAP-FQQVQAVAGGPL 103 (256)
Q Consensus 85 ~~~~~~~-~k~~~~~~~~~~ 103 (256)
++++.+. +.+ ||..|-
T Consensus 41 ne~mir~M~~Q---MGqKPS 57 (72)
T PRK00523 41 TENMIRAMYMQ---MGRKPS 57 (72)
T ss_pred CHHHHHHHHHH---hCCCcc
Confidence 5655444 443 777753
No 56
>PRK10132 hypothetical protein; Provisional
Probab=29.10 E-value=2e+02 Score=23.37 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025177 49 VTATTAINGAAIGAFLG 65 (256)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G 65 (256)
.-+++++.|+++|++++
T Consensus 89 svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 89 SVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66678888888888875
No 57
>PRK01844 hypothetical protein; Provisional
Probab=27.48 E-value=55 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=8.7
Q ss_pred chhhhhh-hhhhhhhcCCcH
Q 025177 85 NPDAVAP-FQQVQAVAGGPL 103 (256)
Q Consensus 85 ~~~~~~~-~k~~~~~~~~~~ 103 (256)
++++.+. +.+ ||..|-
T Consensus 40 ne~mir~Mm~Q---MGqkPS 56 (72)
T PRK01844 40 NEQMLKMMMMQ---MGQKPS 56 (72)
T ss_pred CHHHHHHHHHH---hCCCcc
Confidence 5655444 443 777753
No 58
>COG4803 Predicted membrane protein [Function unknown]
Probab=27.46 E-value=53 Score=28.76 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=37.7
Q ss_pred CchhhHHHHHHHHHhcHHHHHHH---------HHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhh
Q 025177 14 LPQKAIKDVQFKLKELENGYKSW---------LAKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w---------~~~q~~~~E~cv-~t~~g~v~Gg~lG~~~G~~~ 68 (256)
|...--++++.++.+|+.+...= -..-..+..-.+ .|+.|++.|+.-|.++|+++
T Consensus 12 ~~e~~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 12 DDEDKAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred CCcchHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 34445678888888887765432 122233455566 88889999988888888887
No 59
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.15 E-value=1.8e+02 Score=22.17 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=28.4
Q ss_pred CchhhHHHHHHHHHhcHHHHHHHHHhCCchhhH-H--HHHHHHHHHHHHHHHHHHh
Q 025177 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEA-A--IVTATTAINGAAIGAFLGV 66 (256)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~-c--v~t~~g~v~Gg~lG~~~G~ 66 (256)
.+++.+++++.|+.++|+..+---.- ..+. . +---.|.+-|.++|.++=.
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~~~E---i~Qr~GkkiGRDiGIlYG~v~Glii~~ 61 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFTNAE---IAQRAGKKIGRDIGILYGLVIGLIIFI 61 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence 35678899999999888876532211 0111 1 1223456666666665433
No 60
>PRK10404 hypothetical protein; Provisional
Probab=26.53 E-value=2.3e+02 Score=22.67 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025177 49 VTATTAINGAAIGAFLG 65 (256)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G 65 (256)
.-+++++.|+++|++++
T Consensus 83 avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45778888999998875
No 61
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.28 E-value=2e+02 Score=26.93 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhC
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDV 235 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~ 235 (256)
.+..++++++++++|||+.-++.+--..++.+.++-+-+..+++-
T Consensus 282 ~~~~~~~i~~l~~~lglP~~l~~~gi~~~~~~~~~~~a~~~~~~~ 326 (351)
T cd08170 282 PAEEIEEVIDFCRAVGLPVTLADLGLEDVTEEELRKVAEAACAPG 326 (351)
T ss_pred CHHHHHHHHHHHHHCCCCCcHHHcCCCCCCHHHHHHHHHHHhCCh
Confidence 345689999999999999877766433334455555555555543
No 62
>PLN02975 complex I subunit
Probab=25.06 E-value=1.7e+02 Score=23.61 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhhhccCCCCcchhHH
Q 025177 161 AFTSGLLFAIFQGCSFK---IGEMWQSTQRPTADDVYY 195 (256)
Q Consensus 161 ai~gga~fA~fsga~~~---~g~~f~~~~~~~~~d~~y 195 (256)
++..+.+.+++.|.+.. -..+|.+|+.++-|...|
T Consensus 58 ~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN~rEV~~~ 95 (97)
T PLN02975 58 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY 95 (97)
T ss_pred HHHHHHHHHHhhhHHhhhcccchhhcCCCCCHHHHHhc
Confidence 33444444445444443 357788887654444443
No 63
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.02 E-value=76 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 025177 52 TTAINGAAIGAFLGVMTQD 70 (256)
Q Consensus 52 ~g~v~Gg~lG~~~G~~~~~ 70 (256)
.|.+.|+++|...|++...
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5777888888888888754
No 64
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=24.12 E-value=5.1e+02 Score=23.00 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--h-cccchhHHHH--HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHH
Q 025177 103 LVQARNFAVITGVNAGISCVMKRL--R-GKEDLQSSVV--AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQ 172 (256)
Q Consensus 103 ~~~a~nFAv~ggvysg~ec~ie~~--R-gK~D~~Nsii--AG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fs 172 (256)
...|..-.++|.+|=.++.....- | ..+.-||+++ -+.+.|..+++++=+ +.+.+...+.+|+.+
T Consensus 48 ~~~G~agv~~G~l~P~lD~~~~~~~~~~~~~~~w~~v~R~i~~FvGi~~airkl~-----w~s~~Q~s~~lalln 117 (193)
T PF07281_consen 48 PLWGLAGVLLGLLLPWLDSFLGESKPRSSRKPDWSSVLRSIGAFVGISFAIRKLP-----WSSSLQASITLALLN 117 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccccccCCccccHHHHHHHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHH
Confidence 345555556677777777776665 2 2345577776 466678888888755 344444445555444
No 65
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=23.72 E-value=71 Score=31.17 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.1
Q ss_pred cCCChhhhhh-CCCCCchhHH-HHHHHhh
Q 025177 225 PLLTDSALRD-VRIPPGPRLL-ILDHIQR 251 (256)
Q Consensus 225 ~~~~~~~l~~-~~iP~GpR~~-il~~~~~ 251 (256)
+.+|=+||.+ +|+||||..+ ||+++..
T Consensus 344 l~i~G~DLm~~lG~~pGp~ig~iL~~l~~ 372 (394)
T PRK13299 344 LAVNGGDLLKHFGKKPGPWLGETLRKIEE 372 (394)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 6789999999 6999999975 6776653
No 66
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=23.68 E-value=2.4e+02 Score=28.17 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH-------HHhhhhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 025177 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (256)
Q Consensus 104 ~~a~nFAv~ggvysg~ec~ie~~RgK~D~~NsiiAG~~tG-------a~l~~~~G~~~~~~~~~ai~gga~fA~fsga~ 175 (256)
....|||..|+.++..= +-|.| |..+...+++.+| ++++..-.. .-|+-+++.+|+..+++.+.+
T Consensus 345 ~~~~~~aq~ga~lav~l----k~k~~-~~k~~a~sa~is~~~GITEPaiyGv~l~~--kkp~i~~~ig~~igG~~~g~~ 416 (462)
T TIGR01992 345 IALSNIAQGSAALGIIF----MSRNE-KEKGLSLTSAISAYLGVTEPAMFGVNLKY--KFPFIAAMIGSGLAGLLSGLN 416 (462)
T ss_pred HHHHHHHHHHHHHHHHH----HHCCH-HHHHHHHHHHHHHHhccchHhHHHhccch--hhHHHHHHHHHHHHHHHHHHh
Confidence 45668888888887632 22222 3444444444443 344443322 123556666666666666554
No 67
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=23.55 E-value=3.4e+02 Score=23.15 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 025177 34 KSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (256)
Q Consensus 34 ~~w~~~q~~~~E~cv~t~~g~v~Gg~lG~~~G~~~~~ 70 (256)
+.|.... ....+...+++.+.|++.|++.|+....
T Consensus 28 R~~~e~~--~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~ 62 (149)
T TIGR00983 28 RGWFEDL--CFGTGTCYLTGLAIGALNGLRLGLKETQ 62 (149)
T ss_pred CChhhhh--hhhHhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4555432 3455668899999999999999999743
No 68
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.54 E-value=77 Score=27.88 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=25.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025177 41 PLPVEAAIVTATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 41 ~~~~E~cv~t~~g~v~Gg~lG~~~G~~~ 68 (256)
.-.+.+.+.+++|.+.|+++|+|++++.
T Consensus 41 ~c~~Ka~~sgV~GfglG~~~GlFlas~d 68 (168)
T KOG3225|consen 41 SCAVKAVKSGVTGFGLGGAFGLFLASLD 68 (168)
T ss_pred chhHHHHHhhccccchhhhHHhhhhhcc
Confidence 5577777799999999999999999998
No 69
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=22.12 E-value=2.5e+02 Score=25.14 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 025177 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (256)
Q Consensus 136 iiAG~~tGa~l~~~~G~~~~~~~~~ai~gga~fA~fsga~ 175 (256)
...|.++|++++...|.. .+.-+.++.+++..|++.+++
T Consensus 39 a~~Ga~~Ga~~G~~~g~~-~~~~~~a~~ga~~G~~~G~~~ 77 (219)
T PRK10510 39 AGIGSLVGAGIGALSSSK-KDRGKGALIGAAAGAALGGGV 77 (219)
T ss_pred hHHHHHHHHHHHhhhcCC-CcccchhhhHhHHHhhhhhhh
Confidence 445666677777665421 111234555555445544443
No 70
>PHA01516 hypothetical protein
Probab=21.89 E-value=49 Score=26.06 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcccC----CChhhhhhCCCC
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPL----LTDSALRDVRIP 238 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~----~~~~~l~~~~iP 238 (256)
-++-..|....+-+|..|.+-.--+-+-|-| +||+||.|||+-
T Consensus 27 v~~m~~la~yd~fqydnnik~dycn~~glqm~de~ltd~dleem~lt 73 (98)
T PHA01516 27 VRVMDALADYDAFQYDNNIKPDYCNANGLQMWDESLTDQDLEEMELT 73 (98)
T ss_pred chHHHHHhcchhhhhccCCCccccCccchhhhhhhcchhHHHHccch
Confidence 3556677777788888888777766666665 478899999975
No 71
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=21.84 E-value=57 Score=27.75 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhcCchhhHH
Q 025177 194 YYARTRGMLDKLGLQNYTK 212 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~ 212 (256)
-|+++...|+.|++++|+.
T Consensus 67 a~EHviKALenLef~eyi~ 85 (148)
T COG5150 67 AYEHVIKALENLEFEEYIE 85 (148)
T ss_pred cHHHHHHHHHhccHHHHHH
Confidence 4999999999999999863
No 72
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=21.71 E-value=3.6e+02 Score=20.35 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhh----cCCCCC-C--hhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025177 135 SVVAAFGSGAAFSLV----SGMGGA-N--PAVNAFTSGLLFAIFQGCSFKIGEMW 182 (256)
Q Consensus 135 siiAG~~tGa~l~~~----~G~~~~-~--~~~~ai~gga~fA~fsga~~~~g~~f 182 (256)
++.+|+++|-++... .|.-.| + .....+.-.++||++||++..+-+..
T Consensus 9 ~~~ag~~a~k~~~~~W~~~tg~~~P~~~~d~~~~~~e~l~~Aaisgav~avv~~~ 63 (78)
T PF14019_consen 9 GLAAGFLAGKVFEQVWKKVTGREPPKDPDDPDRSLREALAFAAISGAVFAVVRAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666432 232223 2 23445556667777777776666554
No 73
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.71 E-value=45 Score=27.86 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCCh---hhhhhCCCC
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTD---SALRDVRIP 238 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~---~~l~~~~iP 238 (256)
.-+.+-+.|+.+||.+|++. |+.||.++|--..+ ..+.-.||-
T Consensus 92 ~~~~vl~~Lk~~gl~~~Ir~--keev~k~alk~~~~~~~~~~~v~Gv~ 137 (149)
T PF07352_consen 92 DEEKVLEWLKENGLKEFIRT--KEEVDKEALKKEPDVDEDGEIVPGVT 137 (149)
T ss_dssp -HHHHHHHHHHCT-GCC----------HHHHTTS-H---HHHHHTT--
T ss_pred CHHHHHHHHHHcCchhhEEe--eeecCHHHHhcCcccccccceeCCeE
Confidence 56678888999999999887 88999999988888 888777764
No 74
>COG5457 Uncharacterized conserved small protein [Function unknown]
Probab=20.53 E-value=28 Score=25.91 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=11.7
Q ss_pred ccCCChhhhhhCCCC
Q 025177 224 LPLLTDSALRDVRIP 238 (256)
Q Consensus 224 l~~~~~~~l~~~~iP 238 (256)
|.=+||.+|+|+||-
T Consensus 35 L~~lsd~~L~DiGis 49 (63)
T COG5457 35 LLRLSDHLLSDIGIS 49 (63)
T ss_pred HHHHhHHHHHHcCCC
Confidence 334578999999996
No 75
>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]
Probab=20.21 E-value=5.9e+02 Score=22.97 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=36.4
Q ss_pred HHHHHH-HHhhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHhhcCchhhHHHH
Q 025177 138 AAFGSG-AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLGLQNYTKNF 214 (256)
Q Consensus 138 AG~~tG-a~l~~~~G~~~~~~~~~ai~gga~fA~fsga~~~~g~~f~~~~~~~~~d~~y~~~~~~l~~l~l~~y~~~f 214 (256)
+++..+ |..+++.|. +..+...+++.++-|+++-.+|-+ ||.++.+ -.++-.-|.+.|
T Consensus 86 SS~t~~~A~~a~~~~~------~~~~~~wL~~T~lLG~~Fv~~q~y-----------E~~hl~~--~~~~~~~f~S~F 144 (209)
T COG1845 86 SSFTCGLAVHALRRGN------RKGARAWLLLTLLLGAAFVGGQLY-----------EYYHLIA--FGLTASAFGSAF 144 (209)
T ss_pred HHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHh--cCcCccHHHHHH
Confidence 443333 667777776 566777777777778887877776 5555555 344444444443
Done!