Query 025177
Match_columns 256
No_of_seqs 176 out of 620
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k1r_B Usher syndrome type-1G 99.6 4E-17 1.4E-21 122.0 2.1 57 196-252 3-59 (74)
2 2f3n_A SH3 and multiple ankyri 99.3 6.7E-13 2.3E-17 98.8 5.0 56 197-252 9-65 (76)
3 1kw4_A Polyhomeotic; SAM domai 99.3 6.3E-13 2.2E-17 102.4 3.4 59 195-253 19-79 (89)
4 2e8n_A Ephrin type-A receptor 99.3 5.8E-13 2E-17 101.9 2.3 62 191-252 8-71 (88)
5 2qkq_A Ephrin type-B receptor 99.3 3.4E-13 1.2E-17 101.9 1.0 59 195-253 15-75 (83)
6 2kso_A Ephrin type-A receptor 99.3 7.3E-13 2.5E-17 100.5 2.5 62 191-252 12-75 (82)
7 1b4f_A EPHB2; SAM domain, EPH 99.3 9.5E-13 3.2E-17 99.1 2.2 58 195-252 11-70 (82)
8 3hil_A Ephrin type-A receptor 99.3 1.8E-12 6.1E-17 98.6 3.4 58 194-251 22-81 (82)
9 2eam_A Putative 47 kDa protein 99.3 2.3E-12 7.8E-17 96.7 3.8 61 195-255 12-76 (80)
10 3bq7_A Diacylglycerol kinase d 99.3 2.2E-12 7.6E-17 97.0 3.7 59 195-253 12-71 (81)
11 1ucv_A Ephrin type-A receptor 99.3 1.1E-12 3.8E-17 98.9 1.6 58 195-252 7-66 (81)
12 2gle_A Neurabin-1; SAM domain, 99.2 2.3E-12 8E-17 94.7 2.6 55 198-252 12-67 (74)
13 3h8m_A Ephrin type-A receptor 99.2 2.7E-12 9.4E-17 99.1 1.9 62 191-252 21-84 (90)
14 1b0x_A Protein (EPHA4 receptor 99.2 2.3E-12 7.9E-17 99.7 1.4 59 194-252 25-85 (94)
15 2eao_A Ephrin type-B receptor 99.2 3.1E-12 1.1E-16 99.9 2.0 59 194-252 21-81 (99)
16 3kka_C Ephrin type-A receptor 99.2 6.3E-12 2.2E-16 96.3 3.4 63 191-253 17-81 (86)
17 2kg5_A ARF-GAP, RHO-GAP domain 99.2 7.8E-12 2.7E-16 98.3 3.5 58 195-252 26-85 (100)
18 2lmr_A ODIN, ankyrin repeat an 99.1 3.3E-11 1.1E-15 95.0 5.0 58 197-254 31-92 (101)
19 1x40_A ARAP2; ASAP-related pro 99.1 5.7E-11 1.9E-15 91.6 3.8 56 197-252 17-74 (91)
20 2e8o_A SAM domain and HD domai 99.1 1.1E-10 3.8E-15 91.5 4.7 59 194-252 31-92 (103)
21 3bs5_B Connector enhancer of k 99.0 6.5E-11 2.2E-15 88.2 3.1 57 196-252 10-69 (80)
22 2k4p_A Phosphatidylinositol-3, 99.0 1.1E-10 3.6E-15 89.7 3.5 56 197-252 28-85 (86)
23 2ean_A Connector enhancer of k 99.0 8.8E-11 3E-15 88.3 2.4 57 196-252 14-73 (83)
24 2d3d_A VTS1 protein; RNA bindi 98.9 3.8E-10 1.3E-14 87.3 3.2 55 195-251 18-73 (88)
25 1pk1_B Sex COMB on midleg CG94 98.9 3.9E-10 1.3E-14 86.9 3.2 60 195-254 19-81 (89)
26 3sei_A Caskin-1; SAM domain, p 98.9 8.6E-10 2.9E-14 91.8 5.3 63 190-252 5-68 (149)
27 2dl0_A SAM and SH3 domain-cont 98.9 4E-10 1.4E-14 88.1 3.0 62 192-253 20-83 (97)
28 1v38_A SAM-domain protein sams 98.9 5.6E-10 1.9E-14 83.7 3.2 57 196-252 13-71 (78)
29 2ke7_A Ankyrin repeat and ster 98.9 2.2E-10 7.6E-15 90.0 0.6 57 196-252 23-83 (103)
30 3bs7_A Protein aveugle; sterIl 98.8 1.3E-09 4.5E-14 80.7 2.8 57 196-252 9-68 (78)
31 2b6g_A VTS1P; alpha-helix, pen 98.8 1.5E-09 5.1E-14 88.1 2.8 57 193-251 47-104 (119)
32 2es6_A VTS1P; SAM domain, prot 98.8 1.8E-09 6.1E-14 85.3 2.5 55 195-251 31-86 (101)
33 3sei_A Caskin-1; SAM domain, p 98.8 2.7E-09 9.2E-14 88.8 2.9 55 197-251 81-137 (149)
34 1v85_A Similar to ring finger 98.7 5.3E-09 1.8E-13 80.2 2.9 59 195-253 22-85 (91)
35 2kiv_A Ankyrin repeat and ster 98.7 1.1E-08 3.8E-13 84.7 4.8 56 197-252 16-75 (148)
36 1ow5_A Serine/threonine-protei 98.7 6.2E-09 2.1E-13 79.9 2.0 56 197-252 17-74 (85)
37 3bs5_A Protein aveugle; sterIl 98.6 1E-08 3.6E-13 81.0 2.8 58 195-252 28-88 (106)
38 2kiv_A Ankyrin repeat and ster 98.6 2.2E-08 7.5E-13 82.9 3.4 59 194-252 87-148 (148)
39 2d8c_A Phosphatidylcholine:cer 98.5 2.2E-08 7.6E-13 78.2 2.0 55 196-252 23-80 (97)
40 1oxj_A RNA-binding protein sma 98.4 1.4E-07 4.7E-12 80.9 2.7 53 197-251 9-61 (173)
41 2y9u_A Tumor protein 63; apopt 98.4 1.5E-07 5.3E-12 69.4 2.6 56 197-252 6-62 (69)
42 2y9t_A Tumor protein 63; apopt 98.4 1.9E-07 6.5E-12 71.1 3.1 56 196-251 7-63 (82)
43 1wwv_A Connector enhancer of k 98.1 6.8E-07 2.3E-11 69.0 0.8 53 198-252 19-74 (91)
44 3tad_C Liprin-beta-1; protein 97.7 1E-05 3.5E-10 73.4 2.6 57 195-251 92-149 (265)
45 3tad_C Liprin-beta-1; protein 97.4 7.4E-05 2.5E-09 67.8 3.0 59 194-252 19-79 (265)
46 3idw_A Actin cytoskeleton-regu 97.4 0.00011 3.6E-09 54.8 3.2 45 208-252 20-64 (72)
47 2dkz_A Hypothetical protein LO 96.2 0.0024 8.2E-08 48.8 2.6 57 195-251 20-78 (84)
48 3tac_B Liprin-alpha-2; transfe 95.2 0.0094 3.2E-07 55.6 3.1 58 195-252 41-102 (334)
49 1dxs_A P53-like transcription 95.2 0.012 4.2E-07 44.4 3.2 56 197-252 8-64 (80)
50 2l5y_A Stromal interaction mol 95.0 0.014 4.7E-07 48.9 3.2 51 196-246 84-140 (150)
51 3tac_B Liprin-alpha-2; transfe 93.6 0.035 1.2E-06 51.8 3.0 53 198-250 166-220 (334)
52 2k60_A Protein (stromal intera 93.5 0.016 5.6E-07 48.4 0.5 49 198-246 86-140 (150)
53 2eap_A Lymphocyte cytosolic pr 92.5 0.083 2.9E-06 40.7 3.2 51 197-250 26-76 (90)
54 1uqv_A STE50 protein; SAM, ste 90.4 0.089 3E-06 40.2 1.4 55 198-252 17-76 (85)
55 2p2u_A HOST-nuclease inhibitor 49.5 4.6 0.00016 33.7 0.8 44 193-238 107-150 (171)
56 3h38_A TRNA nucleotidyl transf 39.3 17 0.00057 34.7 2.9 27 225-251 375-403 (441)
57 1rrm_A Lactaldehyde reductase; 33.3 52 0.0018 29.8 5.2 48 192-242 321-368 (386)
58 1miw_A TRNA CCA-adding enzyme; 31.3 40 0.0014 31.3 4.1 27 225-251 347-375 (404)
59 3bfj_A 1,3-propanediol oxidore 31.2 1.6E+02 0.0054 26.6 8.1 48 192-242 325-372 (387)
60 3hl0_A Maleylacetate reductase 28.4 2.2E+02 0.0075 25.7 8.5 44 194-242 289-332 (353)
61 3twe_A Alpha4H; unknown functi 26.7 54 0.0018 19.3 2.6 18 17-34 8-25 (27)
62 1vfg_A A-adding enzyme, poly A 26.4 20 0.00069 33.1 1.1 26 226-251 349-385 (390)
63 3ox4_A Alcohol dehydrogenase 2 26.2 89 0.003 28.5 5.4 47 193-242 322-368 (383)
64 2lbg_A Major prion protein; co 24.1 1E+02 0.0035 18.5 3.5 20 49-68 6-25 (27)
65 1oey_A P67-PHOX, neutrophil cy 23.4 19 0.00064 27.0 0.2 43 192-235 23-67 (83)
66 1jei_A Emerin; membrane protei 21.8 30 0.001 23.9 1.0 16 226-241 5-24 (53)
67 3jzd_A Iron-containing alcohol 21.8 3.4E+02 0.012 24.4 8.5 44 194-242 294-337 (358)
No 1
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.64 E-value=4e-17 Score=122.01 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~~ 252 (256)
..+.++|+.|||++|..+|+++.||+++|+.||++||++||||+|||+|||++|+++
T Consensus 3 ~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~~ 59 (74)
T 3k1r_B 3 SPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRR 59 (74)
T ss_dssp CHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999999999875
No 2
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.34 E-value=6.7e-13 Score=98.75 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=53.5
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
.+.++|+.+||++|..+|++..||..+|+.||++||++|||+ +|||+||++.|+..
T Consensus 9 ~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l 65 (76)
T 2f3n_A 9 DVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQL 65 (76)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999998 99999999999865
No 3
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.31 E-value=6.3e-13 Score=102.39 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=55.6
Q ss_pred HHHHHHHHhhc-CchhhHHHHhhccCCCCcccCCChhhh-hhCCCCCchhHHHHHHHhhcc
Q 025177 195 YARTRGMLDKL-GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQRSV 253 (256)
Q Consensus 195 y~~~~~~l~~l-~l~~y~~~f~~~~~~~~~l~~~~~~~l-~~~~iP~GpR~~il~~~~~~~ 253 (256)
.+.+.++|+++ ||++|...|++.+||-.+|++||++|| ++|||++|||+||++.|++..
T Consensus 19 ~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~ 79 (89)
T 1kw4_A 19 VDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK 79 (89)
T ss_dssp HHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 56788999999 999999999999999999999999999 899999999999999998754
No 4
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.8e-13 Score=101.89 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
+-..+..+.++|+.|||++|..+|.+..+| .+.|..||++||++|||+. |+|+|||+.|+..
T Consensus 8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l 71 (88)
T 2e8n_A 8 EGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGL 71 (88)
T ss_dssp CCCSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 434467899999999999999999999999 8999999999999999996 9999999999753
No 5
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.30 E-value=3.4e-13 Score=101.93 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhcc-CCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhcc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGL-LTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRSV 253 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~-~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~~ 253 (256)
+..+.++|+.|||++|..+|.++. +|.+.|..||++||+++||+ +|+|+|||+.|+..+
T Consensus 15 ~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 15 FGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75 (83)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC-
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999 89999999999999999999 999999999998653
No 6
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.29 E-value=7.3e-13 Score=100.46 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
+...+..+.++|+.|||++|..+|.++.+| .+.|..||++||++|||+. |+|+|||+.|+..
T Consensus 12 ~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~L 75 (82)
T 2kso_A 12 PRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGL 75 (82)
T ss_dssp ------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 334577899999999999999999999999 8999999999999999995 9999999999864
No 7
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.27 E-value=9.5e-13 Score=99.13 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccC-CCCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~-~~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
+..+.++|+.|||++|..+|.++.+ |.+.|..||++||+++||+. |+|+|||+.|+..
T Consensus 11 ~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l 70 (82)
T 1b4f_A 11 FNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVM 70 (82)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999 67999999999999999996 9999999999754
No 8
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.27 E-value=1.8e-12 Score=98.63 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhh
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~ 251 (256)
.+.++.++|+.|||++|..+|.+..+| .+.|..||++||++|||+. |+|+|||+.|+.
T Consensus 22 ~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 22 PYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 81 (82)
T ss_dssp CCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 356789999999999999999999999 9999999999999999996 999999999975
No 9
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=96.74 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcc---cCCChhhhhhCCCC-CchhHHHHHHHhhccCC
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTL---PLLTDSALRDVRIP-PGPRLLILDHIQRSVNC 255 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l---~~~~~~~l~~~~iP-~GpR~~il~~~~~~~~~ 255 (256)
+..+.++|+.|||++|..+|.+..+|...+ ..||++||++|||+ +|+|+|||+.|+..+..
T Consensus 12 ~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 12 VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 345889999999999999999999987655 59999999999998 79999999999876543
No 10
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=97.01 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhcc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRSV 253 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~~ 253 (256)
-+.+.++|+.+||++|..+|++..||..+|+.||++||+++|| ++|||+||++.|+...
T Consensus 12 ~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~ 71 (81)
T 3bq7_A 12 TEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELS 71 (81)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999 7899999999998653
No 11
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.25 E-value=1.1e-12 Score=98.86 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
+..+.++|+.|||++|..+|.++.+| .+.|..||++||++|||+. |+|+|||+.|+..
T Consensus 7 ~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l 66 (81)
T 1ucv_A 7 GLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTM 66 (81)
T ss_dssp CSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHH
Confidence 45688999999999999999999999 8999999999999999996 9999999999853
No 12
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.24 E-value=2.3e-12 Score=94.75 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 198 ~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
+.++|+.+||++|..+|++..||.++|+.||++||++|||+ +|||++|++.|+..
T Consensus 12 V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L 67 (74)
T 2gle_A 12 VSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEM 67 (74)
T ss_dssp GHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999854
No 13
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.21 E-value=2.7e-12 Score=99.15 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
+...+.++.++|+.|||++|..+|.+..+| .+.|..||++||++|||+. |+|+|||+.|+..
T Consensus 21 ~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~L 84 (90)
T 3h8m_A 21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTM 84 (90)
T ss_dssp CCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 334566899999999999999999999999 8999999999999999995 9999999999864
No 14
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.21 E-value=2.3e-12 Score=99.72 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccC-CCCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~-~~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
.+..+.++|+.|||++|..+|+++.+ |.+.|..||++||++|||+. |+|+|||..|+..
T Consensus 25 ~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L 85 (94)
T 1b0x_A 25 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAM 85 (94)
T ss_dssp SSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 35678999999999999999999999 78999999999999999997 9999999999753
No 15
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-12 Score=99.88 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhc
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRS 252 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~ 252 (256)
.+..+.++|+.|||++|..+|+++.+| .+.|..||++||++|||+. |+|+|||+.|+..
T Consensus 21 ~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l 81 (99)
T 2eao_A 21 AFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSM 81 (99)
T ss_dssp SCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 357899999999999999999999999 8999999999999999996 9999999999753
No 16
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.20 E-value=6.3e-12 Score=96.35 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCCC-chhHHHHHHHhhcc
Q 025177 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQRSV 253 (256)
Q Consensus 191 ~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP~-GpR~~il~~~~~~~ 253 (256)
+...+.++.++|+.|||++|..+|.+..+| .+.|..||++||+++||+. |+|+|||..|+..+
T Consensus 17 d~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr 81 (86)
T 3kka_C 17 QGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLK 81 (86)
T ss_dssp ------CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred cccchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 344577899999999999999999999999 6999999999999999997 99999999998654
No 17
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.19 E-value=7.8e-12 Score=98.33 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
...+.++|..|||++|..+|.+..+| .+.|..||++||++|||+ +|+|+|||+.|+..
T Consensus 26 ~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~L 85 (100)
T 2kg5_A 26 DLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTG 85 (100)
T ss_dssp TCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTT
T ss_pred cChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHH
Confidence 34589999999999999999999999 799999999999999999 59999999999864
No 18
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.14 E-value=3.3e-11 Score=95.03 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=52.1
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCC-Cccc--CCChhhhhhCCCC-CchhHHHHHHHhhccC
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLP--LLTDSALRDVRIP-PGPRLLILDHIQRSVN 254 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~-~~l~--~~~~~~l~~~~iP-~GpR~~il~~~~~~~~ 254 (256)
.+.++|+.|||++|..+|....+|. +.|. .||++||++|||+ +|+|+|||..|+...+
T Consensus 31 ~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~ 92 (101)
T 2lmr_A 31 SVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPK 92 (101)
T ss_dssp CHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 6888999999999999999999985 5666 7999999999999 5999999999987543
No 19
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.08 E-value=5.7e-11 Score=91.55 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=51.7
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
.+.++|+.|+|++|..+|++..++ .+.|..||++||++|||. +|+|+|||..|+..
T Consensus 17 ~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L 74 (91)
T 1x40_A 17 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQII 74 (91)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHH
Confidence 478999999999999999999985 789999999999999996 89999999999753
No 20
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=91.50 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCchh--hHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 194 YYARTRGMLDKLGLQN--YTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~--y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
.-+.+.++|+.+||++ |..+|++..||-..|+.||++||+|||| .+|+|+||++.|+..
T Consensus 31 s~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~L 92 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRL 92 (103)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4677899999999998 9999999999999999999999999999 799999999999864
No 21
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.05 E-value=6.5e-11 Score=88.18 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=52.6
Q ss_pred HHHHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
+.+.++|+.+ ||++|..+|++..||.+.|+.||++||+++|| ++|+|++|++.|+..
T Consensus 10 ~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L 69 (80)
T 3bs5_B 10 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLL 69 (80)
T ss_dssp HHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3578899999 59999999999999999999999999999999 689999999999853
No 22
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.03 E-value=1.1e-10 Score=89.65 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=51.2
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
.+.++|+.|||++|..+|....+| .+.|..||++||++|||+ +|+|+|||..|+..
T Consensus 28 ~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~L 85 (86)
T 2k4p_A 28 GMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85 (86)
T ss_dssp SSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 367799999999999999999996 599999999999999999 59999999998753
No 23
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=8.8e-11 Score=88.28 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=52.8
Q ss_pred HHHHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
+.+.++|+.+ ||++|..+|++..||.+.|+.||++||++||| ++|+|++|++.|+..
T Consensus 14 ~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L 73 (83)
T 2ean_A 14 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLL 73 (83)
T ss_dssp THHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3588999999 59999999999999999999999999999999 689999999999853
No 24
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=98.93 E-value=3.8e-10 Score=87.28 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
+..+.++|++|+|.+|..+|+. ++.++++.+||+||+++||- +|+|+|||..|+.
T Consensus 18 ~~~V~~WL~sLrLhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~ 73 (88)
T 2d3d_A 18 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 73 (88)
T ss_dssp HTCHHHHHHHTTCGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcccchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 5568999999999999999974 89999999999999999999 9999999999874
No 25
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=98.93 E-value=3.9e-10 Score=86.93 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=54.5
Q ss_pred HHHHHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhh-hhCCCCCchhHHHHHHHhhccC
Q 025177 195 YARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQRSVN 254 (256)
Q Consensus 195 y~~~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l-~~~~iP~GpR~~il~~~~~~~~ 254 (256)
.+.+.++|+++ |+++|...|++.+||=.+|++||++|| ++|||++|||+||.+.|++..+
T Consensus 19 vedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~ 81 (89)
T 1pk1_B 19 IEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNG 81 (89)
T ss_dssp HHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHc
Confidence 56688999998 799999999999999999999999998 5699999999999999987644
No 26
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.92 E-value=8.6e-10 Score=91.84 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 190 ADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 190 ~~d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
++...+..+.++|+.+||++|..+|....+|.+.|..+|++||+++||. +|+|+|||..|+..
T Consensus 5 ~~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L 68 (149)
T 3sei_A 5 REGKSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGL 68 (149)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTC
T ss_pred cccCcHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999999999999999999998 49999999999865
No 27
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=88.06 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhhcc
Q 025177 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRSV 253 (256)
Q Consensus 192 d~~y~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~~ 253 (256)
...+..+.++|..+||++|..+|....+| .+.|..+|++||++|||. +|+|+|||+.|+..+
T Consensus 20 ~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr 83 (97)
T 2dl0_A 20 PGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFK 83 (97)
T ss_dssp CSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCC
T ss_pred ccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999 599999999999999997 899999999998643
No 28
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.90 E-value=5.6e-10 Score=83.71 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=52.2
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
..+.++|..++|++|..+|....+| .+.+..+|++||+++||. +|+|+|||..|+..
T Consensus 13 ~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L 71 (78)
T 1v38_A 13 QTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESL 71 (78)
T ss_dssp CBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999998885 789999999999999998 69999999999864
No 29
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=98.89 E-value=2.2e-10 Score=89.99 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcc---cCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTL---PLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l---~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
..+.++|+.+||++|..+|.+..+|...+ ..||++||++|||. +|+|+|||..|+..
T Consensus 23 ~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L 83 (103)
T 2ke7_A 23 QTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 83 (103)
T ss_dssp CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998876 59999999999998 89999999999864
No 30
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.82 E-value=1.3e-09 Score=80.68 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=52.9
Q ss_pred HHHHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
+.+.++|+.+ |+++|..+|++..||-.+|+.||++||+++||. +|+|++|++.|+..
T Consensus 9 ~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~L 68 (78)
T 3bs7_A 9 SDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 68 (78)
T ss_dssp HHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHH
Confidence 3578899998 999999999999999999999999999999996 89999999999853
No 31
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.5e-09 Score=88.12 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 193 ~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
+.+..+.++|+.|+|.+|..+| +.++.+.|+.|+|+||+++||. +|+|+|||..|+.
T Consensus 47 ~~~~dV~~WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~ 104 (119)
T 2b6g_A 47 KLLKNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 104 (119)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHCCChhHHHHH--ccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHH
Confidence 3466777999999999999999 5689999999999999999998 9999999988864
No 32
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.78 E-value=1.8e-09 Score=85.35 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
+..+.++|++|+|.||..+|+. ++.+++..+||+||+++||- +|+|+|||.-|+.
T Consensus 31 ~~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~ 86 (101)
T 2es6_A 31 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 86 (101)
T ss_dssp HTCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 5668999999999999999966 79999999999999999999 9999999998874
No 33
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.76 E-value=2.7e-09 Score=88.83 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHhhcCchhhHHHHhhccCC-CCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~-~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
.+.++|+.|||++|..+|....+| .+.|..+|++||+++||. +|+|+|||+.|+.
T Consensus 81 ~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~ 137 (149)
T 3sei_A 81 NLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRK 137 (149)
T ss_dssp CHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999 799999999999999997 7999999999975
No 34
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.70 E-value=5.3e-09 Score=80.20 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCc--hhhHHHHhhccCCCCcccCCChhhhhh--CCCC-CchhHHHHHHHhhcc
Q 025177 195 YARTRGMLDKLGL--QNYTKNFKRGLLTDSTLPLLTDSALRD--VRIP-PGPRLLILDHIQRSV 253 (256)
Q Consensus 195 y~~~~~~l~~l~l--~~y~~~f~~~~~~~~~l~~~~~~~l~~--~~iP-~GpR~~il~~~~~~~ 253 (256)
.+.+.++|+.+|+ ++|..+|.+..||-..|+.||++||++ +||- .|+|++|++.|+..+
T Consensus 22 ~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr 85 (91)
T 1v85_A 22 TEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVR 85 (91)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence 4568899999999 999999999999999999999999998 9996 699999999998754
No 35
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=84.67 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=51.1
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCCccc---CCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLP---LLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~~~l~---~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
.+.++|+.+||++|..+|....+|..++. .+|++||+++||. +|+|+||+..|+..
T Consensus 16 ~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L 75 (148)
T 2kiv_A 16 TVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 75 (148)
T ss_dssp BHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHC
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999995544 8999999999998 89999999999864
No 36
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.66 E-value=6.2e-09 Score=79.88 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=53.3
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCC-CcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~-~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
.+.++|.++|+++|...|....|+. +.|+-|+.++|+|||| .+|.|++||..++..
T Consensus 17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~L 74 (85)
T 1ow5_A 17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSF 74 (85)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 7899999999999999999999999 9999999999999999 589999999999754
No 37
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=98.64 E-value=1e-08 Score=81.01 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=54.4
Q ss_pred HHHHHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 195 YARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
-+.+.++|+.+ |+++|..+|++..||-.+|+.||++||++|||. .|+|++|++.|+..
T Consensus 28 ~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~L 88 (106)
T 3bs5_A 28 VSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQ 88 (106)
T ss_dssp HHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 56789999999 999999999999999999999999999999995 79999999999853
No 38
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.58 E-value=2.2e-08 Score=82.89 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCC-CcccCCChhhh-hhCCCC-CchhHHHHHHHhhc
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSAL-RDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~-~~l~~~~~~~l-~~~~iP-~GpR~~il~~~~~~ 252 (256)
...++.++|..+||++|..+|....++. +.|.-+|++|| +++||+ +|+|+|||+.|+.+
T Consensus 87 ~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~~ 148 (148)
T 2kiv_A 87 HPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGDR 148 (148)
T ss_dssp CCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhhC
Confidence 3467899999999999999999999965 89999999997 999995 99999999998753
No 39
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.53 E-value=2.2e-08 Score=78.24 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhh--CCC-CCchhHHHHHHHhhc
Q 025177 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD--VRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~--~~i-P~GpR~~il~~~~~~ 252 (256)
+.+.++|+++||++|...| +. ||=.+|..||++|||+ +|| ..|+|+||+..|+..
T Consensus 23 edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L 80 (97)
T 2d8c_A 23 KKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETL 80 (97)
T ss_dssp THHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHH
Confidence 3588999999999999999 55 9999999999999999 998 799999999999853
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=98.36 E-value=1.4e-07 Score=80.85 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=49.8
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhh
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~ 251 (256)
.+..+|++|+|.||..+|.. ++.+++..+||+||+++||-.|.|+|||..|+.
T Consensus 9 dV~~WLksLrLhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~ 61 (173)
T 1oxj_A 9 GIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDK 61 (173)
T ss_dssp THHHHHHHTTCGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcccchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999965 899999999999999999999999999999875
No 41
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=98.35 E-value=1.5e-07 Score=69.43 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHhhcCchhhHHHHhh-ccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFKR-GLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~-~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~~ 252 (256)
++.++|..++++.|..+|.. |..+.+.+.-+|-+||+.||||.|+|+||++-|+..
T Consensus 6 sv~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~l 62 (69)
T 2y9u_A 6 SIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDH 62 (69)
T ss_dssp BHHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHHH
Confidence 47899999999999999865 667789999999999999999999999999988754
No 42
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=71.14 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCchhhHHHHh-hccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhh
Q 025177 196 ARTRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (256)
Q Consensus 196 ~~~~~~l~~l~l~~y~~~f~-~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~ 251 (256)
.++.++|+.++++.|.++|. .|..+++.+.-+|-+||+.||||.|+|+||++-|+.
T Consensus 7 ~SV~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~ 63 (82)
T 2y9t_A 7 CSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD 63 (82)
T ss_dssp SBHHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHH
Confidence 36899999999999999986 567789999999999999999999999999998875
No 43
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.07 E-value=6.8e-07 Score=68.99 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=48.6
Q ss_pred HHHHHhhc--CchhhHHHHhhccCCCCcccCCChhhhhhCCC-CCchhHHHHHHHhhc
Q 025177 198 TRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 198 ~~~~l~~l--~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~i-P~GpR~~il~~~~~~ 252 (256)
+.++|+.| ++.+| +|++..|+-..|..||++||+++|| .+|.|++||+.|+..
T Consensus 19 V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L 74 (91)
T 1wwv_A 19 VATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQL 74 (91)
T ss_dssp HHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHH
Confidence 67889966 89999 8999999999999999999999999 689999999999853
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=97.74 E-value=1e-05 Score=73.44 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhh
Q 025177 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (256)
Q Consensus 195 y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~ 251 (256)
..-+..+|..+||++|...|..-.||-..|+.+|++||+++||. .|+|++|+..|+.
T Consensus 92 ~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~ 149 (265)
T 3tad_C 92 FNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQV 149 (265)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999998 9999999999974
No 45
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=97.37 E-value=7.4e-05 Score=67.80 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhh-hCCC-CCchhHHHHHHHhhc
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~-~~~i-P~GpR~~il~~~~~~ 252 (256)
.-+.+...|+.+||+.|..+|.+-.+|-.+|..+||+||+ |+|| .|+.||||+..|+..
T Consensus 19 ~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el 79 (265)
T 3tad_C 19 TKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQAL 79 (265)
T ss_dssp CHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999995 9998 589999999999864
No 46
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00011 Score=54.77 Aligned_cols=45 Identities=31% Similarity=0.595 Sum_probs=43.2
Q ss_pred hhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhhc
Q 025177 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRS 252 (256)
Q Consensus 208 ~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~~ 252 (256)
+.|..+|.++.||.+-||=++.+-|+++||-.|=-++|+.|++..
T Consensus 20 ~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~l~~k 64 (72)
T 3idw_A 20 QRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999864
No 47
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=48.76 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCchh-hHHHHhhccCCCCcccCCChhhh-hhCCCCCchhHHHHHHHhh
Q 025177 195 YARTRGMLDKLGLQN-YTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQR 251 (256)
Q Consensus 195 y~~~~~~l~~l~l~~-y~~~f~~~~~~~~~l~~~~~~~l-~~~~iP~GpR~~il~~~~~ 251 (256)
.+-+...|..+||++ |...|+.++||=+-|.-|+|+.| .|+|+..=-++||+++|+-
T Consensus 20 v~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~G 78 (84)
T 2dkz_A 20 IEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFING 78 (84)
T ss_dssp HHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 667888999999997 57999999999999999999999 5599999999999999973
No 48
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=95.22 E-value=0.0094 Score=55.62 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=51.8
Q ss_pred HHHHHHHHhh-cCchh-hHHHHhhccCCCCcccCCChhhhh-hCCC-CCchhHHHHHHHhhc
Q 025177 195 YARTRGMLDK-LGLQN-YTKNFKRGLLTDSTLPLLTDSALR-DVRI-PPGPRLLILDHIQRS 252 (256)
Q Consensus 195 y~~~~~~l~~-l~l~~-y~~~f~~~~~~~~~l~~~~~~~l~-~~~i-P~GpR~~il~~~~~~ 252 (256)
-.++-..|+. +|++. |...|+.-..|-.+|.-+||+||+ |+|| .|+.||||+..|+.-
T Consensus 41 ~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel 102 (334)
T 3tac_B 41 GPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM 102 (334)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4467888999 89998 999999999999999999999995 9997 689999999888753
No 49
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=95.22 E-value=0.012 Score=44.40 Aligned_cols=56 Identities=29% Similarity=0.325 Sum_probs=48.4
Q ss_pred HHHHHHhhcCchhhHHHHh-hccCCCCcccCCChhhhhhCCCCCchhHHHHHHHhhc
Q 025177 197 RTRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQRS 252 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~-~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~~~ 252 (256)
++..+|..||++.|+++|. +|.-++--|--+|-+||..|+||-.-|-||-.-+...
T Consensus 8 Sv~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 8 SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred cHHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhHHHh
Confidence 4788999999999999975 5667778888999999999999999999997766544
No 50
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=94.98 E-value=0.014 Score=48.87 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=44.2
Q ss_pred HHHHHHHhh-cCchhhHHHHhhccCCCCcccCCChhh----hhhCCC-CCchhHHHH
Q 025177 196 ARTRGMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSA----LRDVRI-PPGPRLLIL 246 (256)
Q Consensus 196 ~~~~~~l~~-l~l~~y~~~f~~~~~~~~~l~~~~~~~----l~~~~i-P~GpR~~il 246 (256)
+.+.+.|.. ++|++|.+.|++-.||=.+||.|+++. +.++|| +++.|-||.
T Consensus 84 edV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 84 EDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp HHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 345667766 699999999999999999999999876 569999 889999987
No 51
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=93.59 E-value=0.035 Score=51.83 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=48.6
Q ss_pred HHHHHhhcCchhhHHHHhhccCCCCcccCCChhhh-hhCCC-CCchhHHHHHHHh
Q 025177 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRI-PPGPRLLILDHIQ 250 (256)
Q Consensus 198 ~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l-~~~~i-P~GpR~~il~~~~ 250 (256)
....|..+||++|...|..-.||-..|..+|++|| .++|| -..+|++|+.-|+
T Consensus 166 ~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~ 220 (334)
T 3tac_B 166 GNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIM 220 (334)
T ss_dssp HHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hhhhccccChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999 79998 4679999988775
No 52
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=93.46 E-value=0.016 Score=48.44 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHH-hhcCchhhHHHHhhccCCCCcccCCChhh---h-hhCCC-CCchhHHHH
Q 025177 198 TRGML-DKLGLQNYTKNFKRGLLTDSTLPLLTDSA---L-RDVRI-PPGPRLLIL 246 (256)
Q Consensus 198 ~~~~l-~~l~l~~y~~~f~~~~~~~~~l~~~~~~~---l-~~~~i-P~GpR~~il 246 (256)
+.+.| ...+|++|...|++-.||=.+||.|++++ | .++|| +++.|-||-
T Consensus 86 V~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~ 140 (150)
T 2k60_A 86 VVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQ 140 (150)
T ss_dssp HHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHH
Confidence 44556 45599999999999999999999999985 4 89999 788888875
No 53
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.54 E-value=0.083 Score=40.69 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=42.1
Q ss_pred HHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchhHHHHHHHh
Q 025177 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQ 250 (256)
Q Consensus 197 ~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR~~il~~~~ 250 (256)
.+.+.|+++|+.+-++..+|-.||=..|..|||+|||. ||=+|--|+.-|.
T Consensus 26 ~VadWLkk~g~~~cd~lv~Kh~IDG~~lL~LtE~Dlrk---~Pkl~~p~~~k~~ 76 (90)
T 2eap_A 26 SLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQK---FPKLRVPILSKLS 76 (90)
T ss_dssp THHHHHHHTTCHHHHHHHHHTTCCHHHHHTCCHHHHTT---SCTTTHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHhccCchhhhcccHHHhcc---CCccccHHHHHHH
Confidence 37889999999994444457889999999999999998 8999976666554
No 54
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=90.43 E-value=0.089 Score=40.17 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=46.9
Q ss_pred HHHHH-hhcCchh---hHHHHhhccCCCCcccCCChhhhhhCCCC-CchhHHHHHHHhhc
Q 025177 198 TRGML-DKLGLQN---YTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQRS 252 (256)
Q Consensus 198 ~~~~l-~~l~l~~---y~~~f~~~~~~~~~l~~~~~~~l~~~~iP-~GpR~~il~~~~~~ 252 (256)
+-+.+ .+||++. .+.+|+.-.|+=+.|+-|+-+||||++|- .|-|.++.+.|.+.
T Consensus 17 V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~L 76 (85)
T 1uqv_A 17 VITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKM 76 (85)
T ss_dssp HHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55666 8899988 78899999999999999999999999995 67788887777643
No 55
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=49.50 E-value=4.6 Score=33.73 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCC
Q 025177 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (256)
Q Consensus 193 ~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP 238 (256)
..++.+-+.|+++||.+|++. ||+++.++|.-+.|..|.-+||-
T Consensus 107 ~~~~~vle~Lk~~gl~~~Ir~--keevnK~al~~~~~~~~~~~Gv~ 150 (171)
T 2p2u_A 107 ITKDMTLERLRQFGISEGIRI--KEDVNKEAMQGWPDERLEMVGLK 150 (171)
T ss_dssp CCHHHHHHHHHHTTCCTTCCC--CCCCCHHHHTTSCHHHHHHTTCC
T ss_pred CCHHHHHHHHHHCCcHhheee--ccccCHHHHhcCcccceeeCCeE
Confidence 457899999999999998876 79999999999999888888874
No 56
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=39.26 E-value=17 Score=34.66 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred cC-CChhhhhhCCCCCchhH-HHHHHHhh
Q 025177 225 PL-LTDSALRDVRIPPGPRL-LILDHIQR 251 (256)
Q Consensus 225 ~~-~~~~~l~~~~iP~GpR~-~il~~~~~ 251 (256)
++ +|=.||.++|++|||.. +||+.+..
T Consensus 375 ~~~i~G~DLi~~G~~PGP~~G~iL~~l~~ 403 (441)
T 3h38_A 375 LEKINGEYLIRKGITSGKIIGEVLEKILM 403 (441)
T ss_dssp SCSSCCHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 45 89999999999999986 57777753
No 57
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=33.25 E-value=52 Score=29.82 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 192 d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
+..+++++++++++||+.-++-+ .|+.+.++-+-+.++++-...-.||
T Consensus 321 ~~~~~~i~~l~~~lglp~~l~~~---gi~~~~~~~~a~~a~~~~~~~~np~ 368 (386)
T 1rrm_A 321 NAAVEAVFALNRDVGIPPHLRDV---GVRKEDIPALAQAALDDVCTGGNPR 368 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSSGGGG---TCCGGGHHHHHHHHHTCGGGGGCSS
T ss_pred HHHHHHHHHHHHHcCCCCCHHhc---CCCHHHHHHHHHHHHhcccccCCCC
Confidence 34588999999999998554433 4566667767777766533322344
No 58
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=31.33 E-value=40 Score=31.34 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.5
Q ss_pred cCCChhhhh-hCCCCCchhH-HHHHHHhh
Q 025177 225 PLLTDSALR-DVRIPPGPRL-LILDHIQR 251 (256)
Q Consensus 225 ~~~~~~~l~-~~~iP~GpR~-~il~~~~~ 251 (256)
+.+|=+||. .+||||||.. +||+++..
T Consensus 347 ~~i~G~dL~~~lG~~pGp~iG~~L~~l~~ 375 (404)
T 1miw_A 347 LAVNGKDVIEWVGKPAGPWVKEALDAIWR 375 (404)
T ss_dssp CSSCHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 478999999 5999999997 67787754
No 59
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=31.22 E-value=1.6e+02 Score=26.63 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 192 d~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
+..+++++++++++||+.-++-+ .|+.+.++-+.+..+++-...--||
T Consensus 325 ~~~~~~i~~l~~~~glp~~l~~~---gi~~~~~~~~a~~a~~~~~~~~np~ 372 (387)
T 3bfj_A 325 EKAIAAITRLSMDIGIPQHLRDL---GVKETDFPYMAEMALKDGNAFSNPR 372 (387)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGG---TCCGGGHHHHHHHHHHSGGGTTCSS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHc---CCCHHHHHHHHHHHHhCccccCCCC
Confidence 34688999999999998544433 4666667777777766533322344
No 60
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=28.42 E-value=2.2e+02 Score=25.66 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
..+.+++++++||++.-++-+ .|+.+.++-+.+.++++. ..-||
T Consensus 289 ~~~~i~~l~~~lglP~~L~e~---Gi~~~~i~~~a~~a~~~~--~~np~ 332 (353)
T 3hl0_A 289 AGAGLFDFAARLGAPSSLAAL---GVGADDLDPMAELATANP--YWCPR 332 (353)
T ss_dssp HHHHHHHHHHHHTCCCCTGGG---TCCGGGHHHHHHHHTTSC--CCCSS
T ss_pred HHHHHHHHHHHcCCCccHHhc---CCCHHHHHHHHHHHHhcc--cCCCC
Confidence 345688899999988544433 466777777777777763 23455
No 61
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.70 E-value=54 Score=19.33 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhcHHHHH
Q 025177 17 KAIKDVQFKLKELENGYK 34 (256)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (256)
..++|+|+|++.|...++
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 357888888887766554
No 62
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=26.36 E-value=20 Score=33.05 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=2.5
Q ss_pred CCChhhh----------hhCCCCCchhH-HHHHHHhh
Q 025177 226 LLTDSAL----------RDVRIPPGPRL-LILDHIQR 251 (256)
Q Consensus 226 ~~~~~~l----------~~~~iP~GpR~-~il~~~~~ 251 (256)
.+|=+|| .++|++|||.. +||+++..
T Consensus 349 ~i~G~dL~~~~~~~~~~~~~G~~pGp~ig~iL~~l~~ 385 (390)
T 1vfg_A 349 KLPKEKIEELKKQGLKGKELGERIEELKREIMNKIKL 385 (390)
T ss_dssp SCC----------------------------------
T ss_pred CccHHHhhhhhhcCchHHHcCCCCChHHHHHHHHHHH
Confidence 7888999 99999999986 56776653
No 63
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=26.24 E-value=89 Score=28.51 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 193 VYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 193 ~~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
...+++++++++|||+.-++-+ .|+.+.++-+.+..+++-.+..-||
T Consensus 322 ~~i~~~~~l~~~lglP~~L~~~---gi~~~~i~~ia~~a~~~~~~~~np~ 368 (383)
T 3ox4_A 322 ATIQAVRDLAASIGIPANLTEL---GAKKEDVPLLADHALKDACALTNPR 368 (383)
T ss_dssp HHHHHHHHHHHHTTCCSSSTTT---TCCGGGHHHHHHHHTTSGGGGGCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHc---CCCHHHHHHHHHHHHhcccccCCCC
Confidence 3468899999999998644433 3556666666666665543334444
No 64
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=24.12 E-value=1e+02 Score=18.52 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025177 49 VTATTAINGAAIGAFLGVMT 68 (256)
Q Consensus 49 ~t~~g~v~Gg~lG~~~G~~~ 68 (256)
..+.+++.|+.-|+++|+.+
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 45566666766666666543
No 65
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=23.36 E-value=19 Score=26.97 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=28.0
Q ss_pred hhHHHHHHHHH-hhcCc-hhhHHHHhhccCCCCcccCCChhhhhhC
Q 025177 192 DVYYARTRGML-DKLGL-QNYTKNFKRGLLTDSTLPLLTDSALRDV 235 (256)
Q Consensus 192 d~~y~~~~~~l-~~l~l-~~y~~~f~~~~~~~~~l~~~~~~~l~~~ 235 (256)
+..|..++++| ++|.+ .+.....=|-+ +.+.+++++|+||+++
T Consensus 23 ~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~vi~~d~dl~~a 67 (83)
T 1oey_A 23 GLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELVPLSEDSMKDA 67 (83)
T ss_dssp TCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCEECCTTTHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcceeEEEeeCC-CCCCeeccChHHHHHH
Confidence 44577777665 56777 44444433333 6677779999999874
No 66
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=21.85 E-value=30 Score=23.95 Aligned_cols=16 Identities=50% Similarity=0.833 Sum_probs=11.9
Q ss_pred CCChhh----hhhCCCCCch
Q 025177 226 LLTDSA----LRDVRIPPGP 241 (256)
Q Consensus 226 ~~~~~~----l~~~~iP~Gp 241 (256)
-+||++ |+..||++||
T Consensus 5 ~Lsd~eLr~~L~~~G~~~GP 24 (53)
T 1jei_A 5 DLSDTELTTLLRRYNIPHGP 24 (53)
T ss_dssp TCCHHHHHHHHSSSCCSCCC
T ss_pred HcCHHHHHHHHHHhCCCCCC
Confidence 455554 5679999999
No 67
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=21.75 E-value=3.4e+02 Score=24.44 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCchhhHHHHhhccCCCCcccCCChhhhhhCCCCCchh
Q 025177 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (256)
Q Consensus 194 ~y~~~~~~l~~l~l~~y~~~f~~~~~~~~~l~~~~~~~l~~~~iP~GpR 242 (256)
-.+.+++++++||++.-++.+ .|+.+.++-+.+..+++. ..-||
T Consensus 294 ~~~~i~~l~~~lglP~~L~e~---Gi~~~~i~~~a~~a~~~~--~~np~ 337 (358)
T 3jzd_A 294 AAATLFDLAQRHGAPVALRDI---GMREEDLDRAADIALASP--YWNPR 337 (358)
T ss_dssp HHHHHHHHHHHTTCCCCGGGG---TCCGGGHHHHHHHHTTSC--CCCSS
T ss_pred HHHHHHHHHHHcCCCCCHHHc---CCCHHHHHHHHHHHHhcc--cCCCC
Confidence 457888899999888655544 366677777777777663 23465
Done!