Query 025179
Match_columns 256
No_of_seqs 181 out of 1233
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03019 carbonic anhydrase 100.0 5.4E-70 1.2E-74 496.4 25.8 255 1-256 73-330 (330)
2 PLN03014 carbonic anhydrase 100.0 1.5E-69 3.2E-74 495.7 26.1 256 1-256 78-336 (347)
3 PLN00416 carbonate dehydratase 100.0 3.7E-66 8.1E-71 462.2 26.6 254 1-254 1-255 (258)
4 PLN03006 carbonate dehydratase 100.0 1.4E-59 3.1E-64 424.8 23.6 233 18-252 48-283 (301)
5 PRK10437 carbonic anhydrase; P 100.0 1.7E-54 3.6E-59 379.2 21.3 197 47-252 2-199 (220)
6 cd00884 beta_CA_cladeB Carboni 100.0 2.3E-54 4.9E-59 371.7 18.8 189 55-244 1-190 (190)
7 PLN02154 carbonic anhydrase 100.0 2.2E-53 4.8E-58 382.4 23.1 208 45-253 72-279 (290)
8 cd00883 beta_CA_cladeA Carboni 100.0 1.3E-53 2.7E-58 365.0 18.5 180 56-244 1-182 (182)
9 COG0288 CynT Carbonic anhydras 100.0 1.8E-53 3.9E-58 370.3 19.6 201 47-254 2-205 (207)
10 PRK15219 carbonic anhydrase; P 100.0 3.7E-53 7.9E-58 376.3 20.7 189 43-244 51-244 (245)
11 cd03378 beta_CA_cladeC Carboni 100.0 1E-48 2.2E-53 325.9 17.0 150 45-244 1-154 (154)
12 PF00484 Pro_CA: Carbonic anhy 100.0 8.1E-45 1.7E-49 301.2 14.0 152 82-241 1-153 (153)
13 KOG1578 Predicted carbonic anh 100.0 2.4E-43 5.2E-48 311.7 15.2 239 1-250 25-263 (276)
14 cd00382 beta_CA Carbonic anhyd 100.0 4.4E-43 9.5E-48 280.9 14.1 119 78-244 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 3E-40 6.6E-45 272.0 12.7 142 78-244 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.4 7.4E-09 1.6E-13 92.7 -4.6 192 52-246 3-251 (276)
17 PF10070 DUF2309: Uncharacteri 68.0 13 0.00029 38.9 6.4 37 212-248 541-583 (788)
18 COG1254 AcyP Acylphosphatases 58.8 8.6 0.00019 29.4 2.4 20 226-245 29-48 (92)
19 TIGR02742 TrbC_Ftype type-F co 48.7 32 0.0007 27.9 4.4 55 65-138 58-112 (130)
20 PF10500 SR-25: Nuclear RNA-sp 48.3 8.1 0.00018 34.2 0.8 45 208-253 150-195 (225)
21 COG0279 GmhA Phosphoheptose is 46.8 1E+02 0.0022 26.5 7.1 64 81-155 82-152 (176)
22 PF08822 DUF1804: Protein of u 46.8 47 0.001 28.2 5.2 57 3-60 105-161 (165)
23 cd04321 ScAspRS_mt_like_N ScAs 43.2 33 0.00071 25.2 3.4 26 226-251 1-28 (86)
24 PF00355 Rieske: Rieske [2Fe-2 42.8 9.5 0.00021 28.3 0.4 15 229-243 66-80 (97)
25 PRK11181 23S rRNA (guanosine-2 42.0 80 0.0017 28.0 6.3 72 67-151 54-133 (244)
26 PF04019 DUF359: Protein of un 40.0 1.1E+02 0.0023 24.6 6.1 77 74-158 6-82 (121)
27 PF08184 Cuticle_2: Cuticle pr 38.6 16 0.00034 24.7 0.9 13 230-242 7-19 (59)
28 PF00009 GTP_EFTU: Elongation 37.9 20 0.00044 29.8 1.7 16 138-153 2-17 (188)
29 PF01707 Peptidase_C9: Peptida 36.4 13 0.00029 32.2 0.4 36 211-252 139-175 (202)
30 cd03528 Rieske_RO_ferredoxin R 35.3 15 0.00032 27.3 0.4 15 228-242 61-75 (98)
31 PRK11440 putative hydrolase; P 34.8 81 0.0018 26.4 4.9 46 98-153 90-135 (188)
32 cd03478 Rieske_AIFL_N AIFL (ap 33.8 14 0.0003 27.5 0.0 15 228-242 60-74 (95)
33 cd01891 TypA_BipA TypA (tyrosi 33.8 27 0.00059 29.1 1.9 14 139-152 2-15 (194)
34 PRK14445 acylphosphatase; Prov 33.3 55 0.0012 24.6 3.3 20 226-245 29-48 (91)
35 COG1116 TauB ABC-type nitrate/ 32.7 27 0.00059 31.5 1.7 16 138-153 28-43 (248)
36 PF02983 Pro_Al_protease: Alph 31.0 83 0.0018 22.0 3.6 25 224-248 20-44 (62)
37 cd03548 Rieske_RO_Alpha_OMO_CA 30.6 25 0.00055 28.2 1.1 17 228-244 77-93 (136)
38 TIGR02377 MocE_fam_FeS Rieske 30.5 21 0.00045 27.1 0.5 15 228-242 63-77 (101)
39 PRK14432 acylphosphatase; Prov 29.7 42 0.00091 25.5 2.1 20 226-245 27-46 (93)
40 TIGR00186 rRNA_methyl_3 rRNA m 29.7 2.2E+02 0.0047 25.1 7.0 69 68-149 50-126 (237)
41 PF05952 ComX: Bacillus compet 29.3 55 0.0012 22.9 2.4 25 208-232 5-29 (57)
42 TIGR02378 nirD_assim_sml nitri 28.8 21 0.00046 27.0 0.3 15 228-242 68-82 (105)
43 cd03529 Rieske_NirD Assimilato 28.4 20 0.00044 27.1 0.1 15 228-242 67-81 (103)
44 PRK14430 acylphosphatase; Prov 28.3 47 0.001 25.2 2.1 19 226-244 29-47 (92)
45 PRK14423 acylphosphatase; Prov 28.2 56 0.0012 24.6 2.5 20 226-245 30-49 (92)
46 cd03473 Rieske_CMP_Neu5Ac_hydr 28.1 22 0.00047 28.1 0.2 17 227-243 70-86 (107)
47 COG2146 {NirD} Ferredoxin subu 27.8 25 0.00053 27.3 0.5 16 227-242 66-81 (106)
48 PRK09511 nirD nitrite reductas 27.6 22 0.00047 27.6 0.2 15 228-242 71-85 (108)
49 PRK14440 acylphosphatase; Prov 27.5 51 0.0011 24.8 2.2 20 226-245 28-47 (90)
50 cd01890 LepA LepA subfamily. 27.5 35 0.00076 27.5 1.4 13 140-152 1-13 (179)
51 cd01878 HflX HflX subfamily. 26.9 43 0.00094 27.9 1.9 17 137-153 39-55 (204)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 26.9 40 0.00087 26.6 1.7 13 140-152 1-13 (168)
53 KOG0025 Zn2+-binding dehydroge 26.5 1E+02 0.0022 29.0 4.3 40 96-146 154-193 (354)
54 PRK00075 cbiD cobalt-precorrin 26.4 5.7E+02 0.012 24.4 9.6 21 128-149 236-256 (361)
55 PRK09965 3-phenylpropionate di 25.6 26 0.00057 26.7 0.3 15 228-242 63-77 (106)
56 cd03474 Rieske_T4moC Toluene-4 25.6 28 0.00061 26.5 0.5 14 228-241 62-75 (108)
57 cd03530 Rieske_NirD_small_Baci 25.1 23 0.00049 26.4 -0.1 14 228-241 62-75 (98)
58 PRK14429 acylphosphatase; Prov 24.5 67 0.0015 24.1 2.4 19 226-244 27-45 (90)
59 cd04160 Arfrp1 Arfrp1 subfamil 24.2 43 0.00093 26.6 1.3 14 141-154 1-14 (167)
60 PRK14451 acylphosphatase; Prov 23.9 63 0.0014 24.3 2.1 20 226-245 28-47 (89)
61 PF00857 Isochorismatase: Isoc 23.7 1.7E+02 0.0036 23.6 4.9 44 102-155 85-128 (174)
62 cd04167 Snu114p Snu114p subfam 23.2 47 0.001 28.2 1.5 15 140-154 1-15 (213)
63 PRK14448 acylphosphatase; Prov 23.1 65 0.0014 24.2 2.1 20 226-245 27-46 (90)
64 cd03531 Rieske_RO_Alpha_KSH Th 23.0 42 0.0009 26.1 1.0 17 228-245 63-79 (115)
65 PRK14446 acylphosphatase; Prov 22.9 1.2E+02 0.0025 22.8 3.4 20 226-245 27-46 (88)
66 PF00561 Abhydrolase_1: alpha/ 22.8 76 0.0017 25.9 2.7 29 125-154 29-57 (230)
67 cd04169 RF3 RF3 subfamily. Pe 22.6 56 0.0012 29.4 1.9 16 139-154 2-17 (267)
68 PRK14426 acylphosphatase; Prov 22.4 74 0.0016 23.9 2.3 20 226-245 29-48 (92)
69 PRK14441 acylphosphatase; Prov 22.4 92 0.002 23.5 2.8 20 226-245 30-49 (93)
70 cd01897 NOG NOG1 is a nucleola 22.2 56 0.0012 25.9 1.7 15 140-154 1-15 (168)
71 TIGR00312 cbiD cobalamin biosy 22.0 6.3E+02 0.014 23.9 8.8 21 128-149 223-243 (347)
72 cd03467 Rieske Rieske domain; 21.7 32 0.0007 25.5 0.1 16 227-242 61-76 (98)
73 PRK14420 acylphosphatase; Prov 21.4 81 0.0018 23.5 2.3 19 226-244 27-45 (91)
74 PRK14449 acylphosphatase; Prov 21.2 87 0.0019 23.4 2.4 20 226-245 28-47 (90)
75 COG4707 Uncharacterized protei 21.2 79 0.0017 24.6 2.1 26 207-237 49-76 (107)
76 PRK14436 acylphosphatase; Prov 21.0 86 0.0019 23.6 2.4 20 226-245 29-48 (91)
77 PF00708 Acylphosphatase: Acyl 20.9 87 0.0019 23.2 2.4 20 226-245 29-48 (91)
78 PF01764 Lipase_3: Lipase (cla 20.9 1.2E+02 0.0026 23.4 3.3 29 127-155 51-79 (140)
79 cd01012 YcaC_related YcaC rela 20.6 1.4E+02 0.0031 24.1 3.8 45 101-155 60-104 (157)
80 cd01015 CSHase N-carbamoylsarc 20.5 2.1E+02 0.0046 23.6 4.9 40 99-148 84-123 (179)
81 PRK14425 acylphosphatase; Prov 20.4 89 0.0019 23.7 2.3 20 226-245 31-50 (94)
82 PRK14434 acylphosphatase; Prov 20.3 97 0.0021 23.4 2.5 20 226-245 27-47 (92)
83 PRK14444 acylphosphatase; Prov 20.3 86 0.0019 23.6 2.2 19 226-244 29-47 (92)
84 cd01013 isochorismatase Isocho 20.1 2.1E+02 0.0046 24.3 4.9 42 100-151 113-154 (203)
No 1
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=5.4e-70 Score=496.41 Aligned_cols=255 Identities=70% Similarity=1.184 Sum_probs=228.4
Q ss_pred CCchhHHHHHHHHHHHhhhccCchhHHHHhHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHhccccCChhhHHhhhcC
Q 025179 1 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAA---GSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKG 77 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~g 77 (256)
|+|+.||+||++|.||||||.++++.||++|+++|++|+.. .++|++++++|++||++|+.+.+..+|.+|++++.|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La~g 152 (330)
T PLN03019 73 MGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKG 152 (330)
T ss_pred HhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhccC
Confidence 78889999999999999999999999999999999999963 356899999999999999998888899999999999
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025179 78 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 157 (256)
Q Consensus 78 q~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~ 157 (256)
|+|+++||+||||||+|+.+||.+|||+||+||+||+|+++|...++++++|||||+.+|+|++|||||||+||||+|++
T Consensus 153 Q~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 153 QSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred CCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 99999999999999999999999999999999999999998754445688999999999999999999999999999998
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEcc
Q 025179 158 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 237 (256)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~ 237 (256)
+....+....++|..|++.+.|++..+....+...+.+++..+++ ||++|+++|+++|+|++++++|+|.||||+||++
T Consensus 233 ~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl~ 311 (330)
T PLN03019 233 SFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYDFV 311 (330)
T ss_pred hccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECC
Confidence 754444444678999999988888765544444456665545554 9999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCcCC
Q 025179 238 NGKFELWDLDFNILPSVSV 256 (256)
Q Consensus 238 TG~v~~~~~~~~~~~~~~~ 256 (256)
||+|++++.++.++|++|+
T Consensus 312 TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 312 NGSFELWELQFGISPVHSI 330 (330)
T ss_pred CceEEEEccccCcCCCCcC
Confidence 9999999999999999985
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.5e-69 Score=495.73 Aligned_cols=256 Identities=68% Similarity=1.146 Sum_probs=231.8
Q ss_pred CCchhHHHHHHHHHHHhhhccCchhHHHHhHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHhccccCChhhHHhhhcC
Q 025179 1 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAA---GSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKG 77 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~g 77 (256)
|++..|++||++|.|||+||.++++.||++|+++|++|+.. .+.+++++++|++||+||+++.+..++.+|++++.|
T Consensus 78 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~G 157 (347)
T PLN03014 78 MGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKG 157 (347)
T ss_pred hchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccC
Confidence 78999999999999999999999999999999999999963 246899999999999999999888899999999999
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025179 78 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 157 (256)
Q Consensus 78 q~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~ 157 (256)
|+|+++||+||||||+|+.+||.+|||+||+||+||+|+++|...+.+++++||||+.+|+|++|||||||+||||+|++
T Consensus 158 Q~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 158 QSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred CCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999997754334578999999999999999999999999999998
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEcc
Q 025179 158 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 237 (256)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~ 237 (256)
+....+....++|+.|+..+.|++.....+.....+.+++..++++||++||++|+++|+|++++++|+|.||||+||++
T Consensus 238 ~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~ 317 (347)
T PLN03014 238 SFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFV 317 (347)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECC
Confidence 75433434467899999999998876665555556677766778899999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCcCC
Q 025179 238 NGKFELWDLDFNILPSVSV 256 (256)
Q Consensus 238 TG~v~~~~~~~~~~~~~~~ 256 (256)
||+|++++.+..++|++|+
T Consensus 318 TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 318 KGAFELWGLEFGLSETSSV 336 (347)
T ss_pred CceEEEeccccccCCcccc
Confidence 9999999999999999875
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=3.7e-66 Score=462.24 Aligned_cols=254 Identities=69% Similarity=1.153 Sum_probs=226.0
Q ss_pred CCchhHHHHHHHHHHHhhhccCchhHHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccccCChhhHHhhhcCCCC
Q 025179 1 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSP 80 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P 80 (256)
||...|+.+|.||.||||.+.+++|.+++++..++++|+....+|.++|++|++||+||+++.+..++.+|+.++.+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P 80 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTP 80 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCC
Confidence 78889999999999999999999999999999999999999889999999999999999999887788999999999999
Q ss_pred ceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCC
Q 025179 81 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP 160 (256)
Q Consensus 81 ~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~ 160 (256)
+++|||||||||+|+.+||++|||+||+||+||+|+++|....+++++|||||+.+|+|++|||||||+||||+|+++..
T Consensus 81 ~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~ 160 (258)
T PLN00416 81 KFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIE 160 (258)
T ss_pred CEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999987753334678999999999999999999999999999987632
Q ss_pred CCC-CCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEccCC
Q 025179 161 DNG-TTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNG 239 (256)
Q Consensus 161 ~~~-~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~TG 239 (256)
... ....+++..|+..+.|+............+.+.+..++++||++|+++|+++|+|++++++|++.||||+||++||
T Consensus 161 ~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG 240 (258)
T PLN00416 161 DDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKG 240 (258)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCc
Confidence 111 1223579999998888876655444444556655667789999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCc
Q 025179 240 KFELWDLDFNILPSV 254 (256)
Q Consensus 240 ~v~~~~~~~~~~~~~ 254 (256)
+|++++.+++..|.-
T Consensus 241 ~v~~~~~~~~~~p~~ 255 (258)
T PLN00416 241 TFDLWELDFKTTPAF 255 (258)
T ss_pred eEEEeccCcCCCCCc
Confidence 999999999887753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.4e-59 Score=424.83 Aligned_cols=233 Identities=43% Similarity=0.811 Sum_probs=204.1
Q ss_pred hhccCchhHHHHhHHHHHHHHHhcC--C-CChHHHHHHHHHHHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCCh
Q 025179 18 SEKSDLEGIAAAKIKQITADLEAAG--S-RDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCP 94 (256)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~p 94 (256)
.+..++..+||+++.++|++|+... + .|.+++++|++||.+|...++..++++|++++.||+|+++||+||||||+|
T Consensus 48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~P 127 (301)
T PLN03006 48 RKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCP 127 (301)
T ss_pred ccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCH
Confidence 4567888999999999999999654 2 378999999999999999998889999999999999999999999999999
Q ss_pred hhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHH
Q 025179 95 SHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWV 174 (256)
Q Consensus 95 e~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l 174 (256)
+.+||++|||+||+||+||+|+++|... .++.+|||||+.+|+|++|||||||+||||+|++.....+ ...++|+.|+
T Consensus 128 e~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv 205 (301)
T PLN03006 128 SAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWV 205 (301)
T ss_pred HHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHH
Confidence 9999999999999999999999887532 3578999999999999999999999999999988754433 2457899999
Q ss_pred HhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCC
Q 025179 175 KICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 252 (256)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~~~~~~~~~ 252 (256)
..+.+++...........+.+++..++++||++|+++|++||+|++++++|+|.||||+||+.||+++.++.++..+.
T Consensus 206 ~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 206 VVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 887777665543323335666777788899999999999999999999999999999999999999999999986654
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.7e-54 Score=379.20 Aligned_cols=197 Identities=24% Similarity=0.395 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchh
Q 025179 47 DPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 126 (256)
Q Consensus 47 ~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~ 126 (256)
..+++|++||++|++..+..+|++|+.++.+|+|+++|||||||||||+.+||.+|||+||+||+||+|++.|. ++
T Consensus 2 ~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~ 77 (220)
T PRK10437 2 KDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NC 77 (220)
T ss_pred chHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----ch
Confidence 35889999999999998778899999999999999999999999999999999999999999999999998764 47
Q ss_pred HHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHH
Q 025179 127 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN 206 (256)
Q Consensus 127 ~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~ 206 (256)
+++||||+.+|+|++|||||||+||+|+|+++.. ..+++..|+..+.|+...........+..+..+.+++.||+
T Consensus 78 ~~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~ 152 (220)
T PRK10437 78 LSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVM 152 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998642 23679999998888776544333334445566778899999
Q ss_pred HHHHHhhcChhHHHHHhcC-ceeEEEEEEEccCCeEEEEeccCCCCC
Q 025179 207 VSLGNLLTYPFVRESVVKN-TLALKGAHYDFVNGKFELWDLDFNILP 252 (256)
Q Consensus 207 ~qv~~L~~~p~i~~~v~~g-~l~V~G~vYDi~TG~v~~~~~~~~~~~ 252 (256)
+|+++|+++|+|++++++| +|.||||+||++||+|++++......+
T Consensus 153 ~qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 153 EQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 9999999999999999999 699999999999999999987655443
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.3e-54 Score=371.72 Aligned_cols=189 Identities=50% Similarity=0.808 Sum_probs=163.8
Q ss_pred HHHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCcc-ccchhHHHHHHH
Q 025179 55 GFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK-KYSGAGAAIEYA 133 (256)
Q Consensus 55 gN~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~-~~~~~~asLeya 133 (256)
||++|++..+..++++|++++.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++++.+ .+.++++|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999887788999999999999999999999999999999999999999999999999986431 234688999999
Q ss_pred HHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 025179 134 VLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL 213 (256)
Q Consensus 134 v~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 213 (256)
+.+|++++|||||||+||||+|+++... +....+++..|+..+.|+...........+..+..+.+++.||++|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986433 123356899999998888766554433334455567788999999999999
Q ss_pred cChhHHHHHhcCceeEEEEEEEccCCeEEEE
Q 025179 214 TYPFVRESVVKNTLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 214 ~~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~ 244 (256)
++|+|++++++|+|.|||||||++||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 7
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.2e-53 Score=382.45 Aligned_cols=208 Identities=41% Similarity=0.747 Sum_probs=175.9
Q ss_pred ChHHHHHHHHHHHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccc
Q 025179 45 DIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYS 124 (256)
Q Consensus 45 p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~ 124 (256)
..+.|++|++||++|....+..++++|+.++.||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.. ..
T Consensus 72 ~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~~ 150 (290)
T PLN02154 72 SYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-PT 150 (290)
T ss_pred hHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-cc
Confidence 45668999999999999998889999999999999999999999999999999999999999999999999987542 13
Q ss_pred hhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHH
Q 025179 125 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEA 204 (256)
Q Consensus 125 ~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~n 204 (256)
++++|||||+.+|+|++|||||||+||||+|+++.........+++++|+....++........+...+.+.+..++++|
T Consensus 151 ~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~N 230 (290)
T PLN02154 151 ETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKES 230 (290)
T ss_pred chhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864322223356899999876655433322222234455556677899
Q ss_pred HHHHHHHhhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCC
Q 025179 205 VNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPS 253 (256)
Q Consensus 205 V~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~~~~~~~~~~ 253 (256)
|+.|+++|+++|+|++++++|+|.||||+||++||+|+.++.+...+++
T Consensus 231 V~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~~f~~ 279 (290)
T PLN02154 231 IKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSDKTNY 279 (290)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccCcccC
Confidence 9999999999999999999999999999999999999999998876654
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.3e-53 Score=365.02 Aligned_cols=180 Identities=34% Similarity=0.541 Sum_probs=156.7
Q ss_pred HHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHH
Q 025179 56 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL 135 (256)
Q Consensus 56 N~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~ 135 (256)
|++|+++.+.+.|++|++++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.+|||||+.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999888999999999999999999999999999999999999999999999999998764 47899999999
Q ss_pred hcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCC-CHHHHHHHHHHHHHHHHHHHhhc
Q 025179 136 HLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL-SFEEQCKNCEKEAVNVSLGNLLT 214 (256)
Q Consensus 136 ~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~ 214 (256)
+|||++|||||||+|||++|+++.. ..+.+.+|+....++........... +..+..+.++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 24679999988777664433222221 33445567788999999999999
Q ss_pred ChhHHHHHhc-CceeEEEEEEEccCCeEEEE
Q 025179 215 YPFVRESVVK-NTLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 215 ~p~i~~~v~~-g~l~V~G~vYDi~TG~v~~~ 244 (256)
+|+|++++++ |++.||||+||++||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 99999999999999999864
No 9
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-53 Score=370.25 Aligned_cols=201 Identities=30% Similarity=0.493 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHhccccCChhhHHhhh-cCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccch
Q 025179 47 DPAERMKTGFIQFRTEKYEKNPDLYGALA-KGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 125 (256)
Q Consensus 47 ~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~-~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~ 125 (256)
..++.|++||++|+++.+...+.+|+.++ .+|+|+++||||||||||||.+||++|||+||+||+||+|++++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 57899999999999998777888888766 569999999999999999999999999999999999999998753 5
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHH-HHHHHHHHHH
Q 025179 126 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFE-EQCKNCEKEA 204 (256)
Q Consensus 126 ~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~n 204 (256)
+++|||||+.+|||++|||||||+|||++|++.....+.. .+..|+....+............... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999876544322 58899977666554433322222222 4445667789
Q ss_pred HHHHHHHhhcChhHHHHHhcCc-eeEEEEEEEccCCeEEEEeccCCCCCCc
Q 025179 205 VNVSLGNLLTYPFVRESVVKNT-LALKGAHYDFVNGKFELWDLDFNILPSV 254 (256)
Q Consensus 205 V~~qv~~L~~~p~i~~~v~~g~-l~V~G~vYDi~TG~v~~~~~~~~~~~~~ 254 (256)
|++||++|+++|.++.++..++ +.||||+||++||+++.++......++.
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~~~ 205 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFEAL 205 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccccC
Confidence 9999999999999999988777 9999999999999999999887766543
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.7e-53 Score=376.26 Aligned_cols=189 Identities=22% Similarity=0.347 Sum_probs=161.2
Q ss_pred CCChHHHHHHHHHHHHHHhccccCChhhH---HhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCC
Q 025179 43 SRDIDPAERMKTGFIQFRTEKYEKNPDLY---GALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYD 119 (256)
Q Consensus 43 ~~p~~~l~~Ll~gN~rf~~~~~~~~~~~~---~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d 119 (256)
.+|++++++|++||+||+++... .++++ .+++.||+|+++||||||||||||.+||++|||+||+||+||+|++
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~-- 127 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND-- 127 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc--
Confidence 67999999999999999998764 34433 2467899999999999999999999999999999999999999975
Q ss_pred ccccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhc-CCCCHHHHHH
Q 025179 120 QKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKEC-NDLSFEEQCK 198 (256)
Q Consensus 120 ~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~-~~~~~~~~~~ 198 (256)
++++|||||+.+|+|++|||||||+||+|+|+++... .+++..|++.+.|+........ ......+...
T Consensus 128 -----~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~ 197 (245)
T PRK15219 128 -----DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVD 197 (245)
T ss_pred -----chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHH
Confidence 2678999999999999999999999999999986432 3579999999888876543211 1113345556
Q ss_pred HHHHHHHHHHHHHhhc-ChhHHHHHhcCceeEEEEEEEccCCeEEEE
Q 025179 199 NCEKEAVNVSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 199 ~~~~~nV~~qv~~L~~-~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~ 244 (256)
.++++||+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 198 ~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 198 AVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 7788999999999985 899999999999999999999999999987
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1e-48 Score=325.91 Aligned_cols=150 Identities=33% Similarity=0.481 Sum_probs=136.5
Q ss_pred ChHHHHHHHHHHHHHHhccccC---ChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCcc
Q 025179 45 DIDPAERMKTGFIQFRTEKYEK---NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 121 (256)
Q Consensus 45 p~~~l~~Ll~gN~rf~~~~~~~---~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~ 121 (256)
|++++++|++||++|+++.... .+++|..++.+|+|+++||||||||++|+.+|+.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 7899999999999999975421 245688899999999999999999999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHH
Q 025179 122 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCE 201 (256)
Q Consensus 122 ~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (256)
++++|||||+.+|++++|||||||+||+++++ +.
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 36799999999999999999999999998863 13
Q ss_pred HHHHHHHHHHhhcChhHHH-HHhcCceeEEEEEEEccCCeEEEE
Q 025179 202 KEAVNVSLGNLLTYPFVRE-SVVKNTLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 202 ~~nV~~qv~~L~~~p~i~~-~v~~g~l~V~G~vYDi~TG~v~~~ 244 (256)
++||++|+++|+++|.+++ ++++|++.||||+||++||+|+++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 5799999999999999888 999999999999999999999874
No 12
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=8.1e-45 Score=301.24 Aligned_cols=152 Identities=36% Similarity=0.613 Sum_probs=121.1
Q ss_pred eEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCC
Q 025179 82 FLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD 161 (256)
Q Consensus 82 ~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~ 161 (256)
++||||||||++|+.+|+.+|||+||+||+||+|++.+. ++++|||||+.+|++++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 689999999999999999999999999999999987653 5889999999999999999999999999998765211
Q ss_pred CCCCCchhHHHHHHhhhhhhHH-HHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEccCCe
Q 025179 162 NGTTASDFIEEWVKICSSAKSK-VKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 240 (256)
Q Consensus 162 ~~~~~~~~i~~~l~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~TG~ 240 (256)
..+.+++|++...|+... ...........+.....+++||++||++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 245799999988887765 222212222222233447899999999999999999999999999999999999998
Q ss_pred E
Q 025179 241 F 241 (256)
Q Consensus 241 v 241 (256)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 13
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=311.72 Aligned_cols=239 Identities=50% Similarity=0.797 Sum_probs=218.7
Q ss_pred CCchhHHHHHHHHHHHhhhccCchhHHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccccCChhhHHhhhcCCCC
Q 025179 1 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSP 80 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P 80 (256)
|..+.|+.++..+.++|..+.++ -++++++.++++ ...+++++++|-.|.++...++|.+|..++++|+|
T Consensus 25 mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~--------~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp 94 (276)
T KOG1578|consen 25 MPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE--------FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSP 94 (276)
T ss_pred CCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc--------cchHHHHHhhHhhhccccCCCChhhhHHHhccCCC
Confidence 67889999999999999999998 899999999993 67899999999999999988999999999999999
Q ss_pred ceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCC
Q 025179 81 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP 160 (256)
Q Consensus 81 ~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~ 160 (256)
+.+||+|+|||+.|+.|++.+|||.|++||++|+|+|.|.+.+..+.|+|||+|.+|+|++|+||||++||++++++...
T Consensus 95 ~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~ 174 (276)
T KOG1578|consen 95 EPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFS 174 (276)
T ss_pred cceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhccccc
Confidence 99999999999999999999999999999999999998776666788999999999999999999999999999998866
Q ss_pred CCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEccCCe
Q 025179 161 DNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 240 (256)
Q Consensus 161 ~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~TG~ 240 (256)
.++. ...++..|.....+++..++++...+++.+++.+++.+.+..++.+|.+||++++++.+|.+++||++||+..|.
T Consensus 175 ~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~ 253 (276)
T KOG1578|consen 175 LEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGT 253 (276)
T ss_pred ccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeeeeeEEeccCc
Confidence 5554 567888898777777777777777788999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 025179 241 FELWDLDFNI 250 (256)
Q Consensus 241 v~~~~~~~~~ 250 (256)
.++|..+.++
T Consensus 254 ~~~~~ldekt 263 (276)
T KOG1578|consen 254 KEFWELDEKT 263 (276)
T ss_pred eeEEEecccc
Confidence 9999999444
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.4e-43 Score=280.94 Aligned_cols=119 Identities=44% Similarity=0.746 Sum_probs=111.4
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025179 78 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 157 (256)
Q Consensus 78 q~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~ 157 (256)
|+|+++||||||||++|+.+||.+|||+||+||+||+|++.|. ++++||+||+..||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7999999999999999999999999999999999999987653 5889999999999999999999999999875
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEcc
Q 025179 158 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 237 (256)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~ 237 (256)
..++||++|+++|++||+++++++.+++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 13569999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 025179 238 NGKFELW 244 (256)
Q Consensus 238 TG~v~~~ 244 (256)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3e-40 Score=272.01 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=112.2
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 025179 78 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 157 (256)
Q Consensus 78 q~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~ 157 (256)
++++++||||||||++|+.+||.+|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 367999999999999999999999999999864
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcCceeEEEEEEEcc
Q 025179 158 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 237 (256)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~i~~~v~~g~l~V~G~vYDi~ 237 (256)
+ .+..|+........... . ............++||++|+++|+++|++++ +++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGG--I-DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhcc--c-CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 3 24556653211100000 0 0011111123457899999999999999997 899999999999
Q ss_pred CCeEEEE
Q 025179 238 NGKFELW 244 (256)
Q Consensus 238 TG~v~~~ 244 (256)
||+++.+
T Consensus 136 tG~v~~v 142 (142)
T cd03379 136 TGKLTEV 142 (142)
T ss_pred CCEEEeC
Confidence 9999863
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.44 E-value=7.4e-09 Score=92.69 Aligned_cols=192 Identities=19% Similarity=0.251 Sum_probs=125.1
Q ss_pred HHHHHHHHHhccccCChhhHHhhhcCCCCceEEeeccCCCCChhhh----------------cCCCCCcEEEEeccCCcC
Q 025179 52 MKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHI----------------LNFQPGEAFMVRNIANMV 115 (256)
Q Consensus 52 Ll~gN~rf~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i----------------f~~~~GdlfViRNaGN~V 115 (256)
|+.|-.||+...+.. +..++..-++|.+..++|+|||+-|... +....||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677788888866432 2256667789999999999999999876 667899999999999999
Q ss_pred CCCCccc-----cchhHHHHHHHHHhcCcceEEEeccCCCCccccccCCCC--CCCC---CchhHHHHHHhhhh------
Q 025179 116 PPYDQKK-----YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD--NGTT---ASDFIEEWVKICSS------ 179 (256)
Q Consensus 116 ~~~d~~~-----~~~~~asLeyav~~L~v~~IVV~GHt~CGav~aa~~~~~--~~~~---~~~~i~~~l~~~~~------ 179 (256)
+....-. .+--...|+-|+......||++|||++|-+++...+... .... ....++.|+....-
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 8632110 111123577788888899999999999999996544322 1111 12568888764210
Q ss_pred ---------hhHHHHhhcCCCCHH---------HHH---HHHHHHHHHHHHHHhhcChhHH--HHHhcCceeEEE--EEE
Q 025179 180 ---------AKSKVKKECNDLSFE---------EQC---KNCEKEAVNVSLGNLLTYPFVR--ESVVKNTLALKG--AHY 234 (256)
Q Consensus 180 ---------a~~~~~~~~~~~~~~---------~~~---~~~~~~nV~~qv~~L~~~p~i~--~~v~~g~l~V~G--~vY 234 (256)
+.-....+.+..++. +.. +.+...|..+|.+|..++.+.. ..+......+++ -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 000000011111222 100 1233457889999998887777 566677777777 677
Q ss_pred EccCCeEEEEec
Q 025179 235 DFVNGKFELWDL 246 (256)
Q Consensus 235 Di~TG~v~~~~~ 246 (256)
+.-.|..+.+..
T Consensus 240 l~~~G~~Y~fsk 251 (276)
T KOG1578|consen 240 LQVHGGYYNFSK 251 (276)
T ss_pred eeeeeeeEEecc
Confidence 777787776654
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.01 E-value=13 Score=38.92 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=26.8
Q ss_pred hhcChhHHHHHhcC------ceeEEEEEEEccCCeEEEEeccC
Q 025179 212 LLTYPFVRESVVKN------TLALKGAHYDFVNGKFELWDLDF 248 (256)
Q Consensus 212 L~~~p~i~~~v~~g------~l~V~G~vYDi~TG~v~~~~~~~ 248 (256)
|.+.|.||+.+++. +...+|+..|.-|-+|++++.+.
T Consensus 541 llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 541 LLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 33455555555544 45679999999999999998764
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=58.83 E-value=8.6 Score=29.39 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.8
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|+||+++..+|.|+.+-
T Consensus 29 ~lgl~G~V~N~~DGsVeiva 48 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred HCCCEEEEEECCCCeEEEEE
Confidence 57899999999999998764
No 19
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=48.72 E-value=32 Score=27.91 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.7
Q ss_pred cCChhhHHhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcC
Q 025179 65 EKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLK 138 (256)
Q Consensus 65 ~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~ 138 (256)
.-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.+ ..||+ ||+||++.+.
T Consensus 58 ~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~--v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDV--VYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeE--EEecc--------------cHHHHHHHHH
Confidence 4589999998877788 6888888875555433 24444433 33664 5788877643
No 20
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=48.25 E-value=8.1 Score=34.25 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHhhc-ChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCC
Q 025179 208 SLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPS 253 (256)
Q Consensus 208 qv~~L~~-~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~~~~~~~~~~ 253 (256)
|-.+++. -|.-++.|+..+ .|+=.|||.+||+.+++-.+++|...
T Consensus 150 qksr~~am~PmTkEEyearQ-SvIRrVvDpETGRtRLIkGdGEilEE 195 (225)
T PF10500_consen 150 QKSRIQAMAPMTKEEYEARQ-SVIRRVVDPETGRTRLIKGDGEILEE 195 (225)
T ss_pred hhhhhhhcCCCCHHHHHHHH-hhheeeecCCCCceeeecccchHHHH
Confidence 4445554 377888887755 56679999999999999999987543
No 21
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=46.82 E-value=1e+02 Score=26.46 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred ceEEeeccCCCCChhhhcCC------CCCcEEE-EeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 025179 81 KFLVFACSDSRVCPSHILNF------QPGEAFM-VRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 153 (256)
Q Consensus 81 ~~~vitC~DSRv~pe~if~~------~~GdlfV-iRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav 153 (256)
...++||.=--...+.+|.. .|||+++ +-+-||-- .++.+++-|.. +|+..|...|-++ |.+
T Consensus 82 dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak~-~gm~vI~ltG~~G-G~~ 150 (176)
T COG0279 82 DSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAKE-KGMTVIALTGKDG-GKL 150 (176)
T ss_pred ccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHHH-cCCEEEEEecCCC-ccc
Confidence 45677888878888888843 6999887 89999853 47888996655 7888888888644 444
Q ss_pred cc
Q 025179 154 KG 155 (256)
Q Consensus 154 ~a 155 (256)
+.
T Consensus 151 ~~ 152 (176)
T COG0279 151 AG 152 (176)
T ss_pred cc
Confidence 43
No 22
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=46.78 E-value=47 Score=28.19 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHhhhccCchhHHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 025179 3 NDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFR 60 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~Ll~gN~rf~ 60 (256)
-|+|-..++.-.|++-|++++. +|-..|..+..-++.+.+.-..++-++|+.+....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~P~h~~af~eiLepFg~~l 161 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERYPQHLAAFLEILEPFGEEL 161 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888764 56667777777777776555666777776665543
No 23
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=43.24 E-value=33 Score=25.20 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=21.7
Q ss_pred ceeEEEEEEEccC--CeEEEEeccCCCC
Q 025179 226 TLALKGAHYDFVN--GKFELWDLDFNIL 251 (256)
Q Consensus 226 ~l~V~G~vYDi~T--G~v~~~~~~~~~~ 251 (256)
++.|+||++.+.. |++.|++..-..|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3689999999997 6899998876666
No 24
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=42.77 E-value=9.5 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.9
Q ss_pred EEEEEEEccCCeEEE
Q 025179 229 LKGAHYDFVNGKFEL 243 (256)
Q Consensus 229 V~G~vYDi~TG~v~~ 243 (256)
.|||.||++||++..
T Consensus 66 ~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 66 CHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTEEEETTTSBEEE
T ss_pred CcCCEEeCCCceEec
Confidence 599999999998754
No 25
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=42.04 E-value=80 Score=28.04 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=41.5
Q ss_pred ChhhHHhhhcCCCCceEEeeccCCCC----ChhhhcCCCC-CcEEEE---eccCCcCCCCCccccchhHHHHHHHHHhcC
Q 025179 67 NPDLYGALAKGQSPKFLVFACSDSRV----CPSHILNFQP-GEAFMV---RNIANMVPPYDQKKYSGAGAAIEYAVLHLK 138 (256)
Q Consensus 67 ~~~~~~~l~~gq~P~~~vitC~DSRv----~pe~if~~~~-GdlfVi---RNaGN~V~~~d~~~~~~~~asLeyav~~L~ 138 (256)
.++.+++++..++|.=++.-|...+. +.+.++.... +-++++ ++.|| +++|-=++..+|
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~N-------------lGai~Rta~a~G 120 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDPHN-------------LGACLRSADAAG 120 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCCcch-------------HHHHHHHHHHcC
Confidence 34567778777777655555554332 2233343222 223333 22222 256777888899
Q ss_pred cceEEEeccCCCC
Q 025179 139 VENIVVIGHSCCG 151 (256)
Q Consensus 139 v~~IVV~GHt~CG 151 (256)
+..|++.+|+.+.
T Consensus 121 ~~~vi~~~~~~~~ 133 (244)
T PRK11181 121 VHAVIVPKDRSAQ 133 (244)
T ss_pred CCEEEECCCCCCC
Confidence 9999998887544
No 26
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=40.03 E-value=1.1e+02 Score=24.59 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=57.2
Q ss_pred hhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 025179 74 LAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 153 (256)
Q Consensus 74 l~~gq~P~~~vitC~DSRv~pe~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav 153 (256)
+..|..|++.++-+==-|-+...... .....+.++|..+.++. +...+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999988888887755444 45678899999999976 35667888877666777778787776655
Q ss_pred ccccC
Q 025179 154 KGLMS 158 (256)
Q Consensus 154 ~aa~~ 158 (256)
-+.+.
T Consensus 78 Pail~ 82 (121)
T PF04019_consen 78 PAILY 82 (121)
T ss_pred HHHHh
Confidence 54433
No 27
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=38.62 E-value=16 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.0
Q ss_pred EEEEEEccCCeEE
Q 025179 230 KGAHYDFVNGKFE 242 (256)
Q Consensus 230 ~G~vYDi~TG~v~ 242 (256)
-|.-|||+||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999874
No 28
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=37.90 E-value=20 Score=29.80 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=13.4
Q ss_pred CcceEEEeccCCCCcc
Q 025179 138 KVENIVVIGHSCCGGI 153 (256)
Q Consensus 138 ~v~~IVV~GHt~CGav 153 (256)
.+..|.|+||.+||=.
T Consensus 2 ~~~~I~i~G~~~sGKT 17 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKT 17 (188)
T ss_dssp TEEEEEEEESTTSSHH
T ss_pred CEEEEEEECCCCCCcE
Confidence 3578999999999974
No 29
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=36.40 E-value=13 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.641 Sum_probs=23.7
Q ss_pred Hh-hcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCC
Q 025179 211 NL-LTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 252 (256)
Q Consensus 211 ~L-~~~p~i~~~v~~g~l~V~G~vYDi~TG~v~~~~~~~~~~~ 252 (256)
.| +.||+++.+++. |-.+|+.||+++.++..-++=|
T Consensus 139 ~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~VP 175 (202)
T PF01707_consen 139 ELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNLVP 175 (202)
T ss_dssp HHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--S-
T ss_pred HHHHhCchhhhcccc------CeeEeecCCceecCCCcccccc
Confidence 44 689999987766 5689999999998887765543
No 30
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=35.33 E-value=15 Score=27.34 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||++||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 469999999999874
No 31
>PRK11440 putative hydrolase; Provisional
Probab=34.81 E-value=81 Score=26.39 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=30.7
Q ss_pred cCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 025179 98 LNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 153 (256)
Q Consensus 98 f~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav 153 (256)
+...+||.++.++--+-.... .|+.-+...|+++|+|||=+-..-|
T Consensus 90 l~~~~~d~vi~K~~~saF~~T----------~L~~~L~~~gi~~lii~Gv~T~~CV 135 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT----------DLELQLRRRGIDTIVLCGISTNIGV 135 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC----------CHHHHHHHCCCCEEEEeeechhHHH
Confidence 345678987777655544321 3666678899999999995544443
No 32
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=33.83 E-value=14 Score=27.52 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 359999999999864
No 33
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=33.78 E-value=27 Score=29.06 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.7
Q ss_pred cceEEEeccCCCCc
Q 025179 139 VENIVVIGHSCCGG 152 (256)
Q Consensus 139 v~~IVV~GHt~CGa 152 (256)
+++|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 67999999999995
No 34
>PRK14445 acylphosphatase; Provisional
Probab=33.29 E-value=55 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.337 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hCCCEEEEEECCCCeEEEEE
Confidence 58899999999999888643
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.69 E-value=27 Score=31.51 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.2
Q ss_pred CcceEEEeccCCCCcc
Q 025179 138 KVENIVVIGHSCCGGI 153 (256)
Q Consensus 138 ~v~~IVV~GHt~CGav 153 (256)
.-+-|.|+|||+||=-
T Consensus 28 ~GEfvsilGpSGcGKS 43 (248)
T COG1116 28 KGEFVAILGPSGCGKS 43 (248)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4478999999999963
No 36
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=31.01 E-value=83 Score=21.96 Aligned_cols=25 Identities=12% Similarity=-0.097 Sum_probs=19.8
Q ss_pred cCceeEEEEEEEccCCeEEEEeccC
Q 025179 224 KNTLALKGAHYDFVNGKFELWDLDF 248 (256)
Q Consensus 224 ~g~l~V~G~vYDi~TG~v~~~~~~~ 248 (256)
.....+++|+-|+.|++|-....+.
T Consensus 20 ~~~~~~~~WyvD~~tn~VVV~a~~~ 44 (62)
T PF02983_consen 20 AAPVAVTSWYVDPRTNKVVVTADST 44 (62)
T ss_dssp HGGGCEEEEEEECCCTEEEEEEECT
T ss_pred cCCCCcceEEEeCCCCeEEEEECCC
Confidence 3467899999999999997765544
No 37
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=30.57 E-value=25 Score=28.24 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.6
Q ss_pred eEEEEEEEccCCeEEEE
Q 025179 228 ALKGAHYDFVNGKFELW 244 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~~~ 244 (256)
.-|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 35999999999998764
No 38
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=30.51 E-value=21 Score=27.11 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 369999999999864
No 39
>PRK14432 acylphosphatase; Provisional
Probab=29.75 E-value=42 Score=25.46 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.4
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|+||+.++..|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999988764
No 40
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=29.74 E-value=2.2e+02 Score=25.06 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=41.0
Q ss_pred hhhHHhhhcCCCCceEEeeccCCCC-ChhhhcCC---CCCc-EEEE---eccCCcCCCCCccccchhHHHHHHHHHhcCc
Q 025179 68 PDLYGALAKGQSPKFLVFACSDSRV-CPSHILNF---QPGE-AFMV---RNIANMVPPYDQKKYSGAGAAIEYAVLHLKV 139 (256)
Q Consensus 68 ~~~~~~l~~gq~P~~~vitC~DSRv-~pe~if~~---~~Gd-lfVi---RNaGN~V~~~d~~~~~~~~asLeyav~~L~v 139 (256)
+..+++++...+|.=++.-|...+. +.+.++.. ...+ +.++ ++.|| +++|-=....+|+
T Consensus 50 ~~~l~~l~~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~N-------------lGaI~Rta~afG~ 116 (237)
T TIGR00186 50 RQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHN-------------LGAILRTAEAFGV 116 (237)
T ss_pred HHHHHHHhCCCCCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCcc-------------HHHHHHHHHHcCC
Confidence 4567778777777666555555543 44455422 1123 2333 22333 2566668888999
Q ss_pred ceEEEeccCC
Q 025179 140 ENIVVIGHSC 149 (256)
Q Consensus 140 ~~IVV~GHt~ 149 (256)
..|++.+++.
T Consensus 117 ~~vil~~~~~ 126 (237)
T TIGR00186 117 DGVILPKRRS 126 (237)
T ss_pred CEEEECCCCc
Confidence 9999988753
No 41
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=29.27 E-value=55 Score=22.88 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.9
Q ss_pred HHHHhhcChhHHHHHhcCceeEEEE
Q 025179 208 SLGNLLTYPFVRESVVKNTLALKGA 232 (256)
Q Consensus 208 qv~~L~~~p~i~~~v~~g~l~V~G~ 232 (256)
-|+.|.++|-+-+.+++|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3678889999999999999999885
No 42
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=28.78 E-value=21 Score=27.02 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.6
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||++||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 359999999999854
No 43
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=28.42 E-value=20 Score=27.13 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.7
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||+.||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 359999999999863
No 44
>PRK14430 acylphosphatase; Provisional
Probab=28.27 E-value=47 Score=25.16 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.5
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 025179 226 TLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~ 244 (256)
++.|.||+.++.+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5779999999999988854
No 45
>PRK14423 acylphosphatase; Provisional
Probab=28.20 E-value=56 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=17.3
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.++.+|.|+.+-
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 58899999999999988653
No 46
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=28.12 E-value=22 Score=28.07 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=14.0
Q ss_pred eeEEEEEEEccCCeEEE
Q 025179 227 LALKGAHYDFVNGKFEL 243 (256)
Q Consensus 227 l~V~G~vYDi~TG~v~~ 243 (256)
-..|||-||+.||+...
T Consensus 70 CP~Hg~~FDLrTG~~~~ 86 (107)
T cd03473 70 CTKHNWKLDVSTMKYVN 86 (107)
T ss_pred eCCCCCEEEcCCCCCcc
Confidence 34699999999999753
No 47
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=27.79 E-value=25 Score=27.31 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.2
Q ss_pred eeEEEEEEEccCCeEE
Q 025179 227 LALKGAHYDFVNGKFE 242 (256)
Q Consensus 227 l~V~G~vYDi~TG~v~ 242 (256)
-..||+.||+.||+..
T Consensus 66 Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 66 CPLHGARFDLRTGECL 81 (106)
T ss_pred CCccCCEEEcCCCcee
Confidence 3469999999999963
No 48
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=27.62 E-value=22 Score=27.57 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||+.||+..
T Consensus 71 P~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 71 PLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCEEECCCcccC
Confidence 469999999999864
No 49
>PRK14440 acylphosphatase; Provisional
Probab=27.49 E-value=51 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVA 47 (90)
T ss_pred HcCCEEEEEECCCCCEEEEE
Confidence 57799999999999888653
No 50
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=27.45 E-value=35 Score=27.47 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 025179 140 ENIVVIGHSCCGG 152 (256)
Q Consensus 140 ~~IVV~GHt~CGa 152 (256)
+.|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999995
No 51
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=26.90 E-value=43 Score=27.93 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.4
Q ss_pred cCcceEEEeccCCCCcc
Q 025179 137 LKVENIVVIGHSCCGGI 153 (256)
Q Consensus 137 L~v~~IVV~GHt~CGav 153 (256)
-+...|+|+|+++||=-
T Consensus 39 ~~~~~I~iiG~~g~GKS 55 (204)
T cd01878 39 SGIPTVALVGYTNAGKS 55 (204)
T ss_pred cCCCeEEEECCCCCCHH
Confidence 45689999999999963
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=26.88 E-value=40 Score=26.63 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=11.5
Q ss_pred ceEEEeccCCCCc
Q 025179 140 ENIVVIGHSCCGG 152 (256)
Q Consensus 140 ~~IVV~GHt~CGa 152 (256)
+.|+|+|+++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 5699999999995
No 53
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=26.54 E-value=1e+02 Score=28.99 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.0
Q ss_pred hhcCCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEec
Q 025179 96 HILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIG 146 (256)
Q Consensus 96 ~if~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~G 146 (256)
.+.+..+|| .||.|.+|-. +..++---+..+|++.|=|+=
T Consensus 154 dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVR 193 (354)
T KOG0025|consen 154 DFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVR 193 (354)
T ss_pred HHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEee
Confidence 455888999 8999999953 444444467889999987764
No 54
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=26.40 E-value=5.7e+02 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCcceEEEeccCC
Q 025179 128 AAIEYAVLHLKVENIVVIGHSC 149 (256)
Q Consensus 128 asLeyav~~L~v~~IVV~GHt~ 149 (256)
-+|++|.. .+++.|+++||-+
T Consensus 236 ~~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 236 PMLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred HHHHHHHH-cCCCEEEEEeeHH
Confidence 36887766 8999999999964
No 55
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=25.60 E-value=26 Score=26.72 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.7
Q ss_pred eEEEEEEEccCCeEE
Q 025179 228 ALKGAHYDFVNGKFE 242 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~ 242 (256)
..|||.||+.||+..
T Consensus 63 p~Hg~~Fd~~tG~~~ 77 (106)
T PRK09965 63 PLHAASFCLRTGKAL 77 (106)
T ss_pred CCCCCEEEcCCCCee
Confidence 359999999999864
No 56
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=25.60 E-value=28 Score=26.45 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=12.1
Q ss_pred eEEEEEEEccCCeE
Q 025179 228 ALKGAHYDFVNGKF 241 (256)
Q Consensus 228 ~V~G~vYDi~TG~v 241 (256)
..|||.||++||..
T Consensus 62 P~Hg~~Fdl~~G~~ 75 (108)
T cd03474 62 RAHLWQFDADTGEG 75 (108)
T ss_pred CCcCCEEECCCccc
Confidence 35999999999975
No 57
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=25.13 E-value=23 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.1
Q ss_pred eEEEEEEEccCCeE
Q 025179 228 ALKGAHYDFVNGKF 241 (256)
Q Consensus 228 ~V~G~vYDi~TG~v 241 (256)
..|||.||+.||.+
T Consensus 62 p~Hg~~Fdl~~G~~ 75 (98)
T cd03530 62 PLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCEEECCCCCC
Confidence 35999999999985
No 58
>PRK14429 acylphosphatase; Provisional
Probab=24.46 E-value=67 Score=24.05 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.6
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 025179 226 TLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~ 244 (256)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 5779999999999988764
No 59
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=24.20 E-value=43 Score=26.56 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=11.6
Q ss_pred eEEEeccCCCCccc
Q 025179 141 NIVVIGHSCCGGIK 154 (256)
Q Consensus 141 ~IVV~GHt~CGav~ 154 (256)
.|+|+||++||=..
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 48999999999743
No 60
>PRK14451 acylphosphatase; Provisional
Probab=23.92 E-value=63 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.2
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|+||+.+...|.|+.+-
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~ 47 (89)
T PRK14451 28 QLMISGWARNLADGRVEVFA 47 (89)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57899999999999998654
No 61
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=23.74 E-value=1.7e+02 Score=23.64 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 025179 102 PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 155 (256)
Q Consensus 102 ~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~a 155 (256)
+||..+.|+--|..... .|+.-+...|+++|+|+|-.-.+-|.+
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~ 128 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLA 128 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEeh
Confidence 39999999977766432 255667889999999999877777654
No 62
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=23.16 E-value=47 Score=28.25 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.0
Q ss_pred ceEEEeccCCCCccc
Q 025179 140 ENIVVIGHSCCGGIK 154 (256)
Q Consensus 140 ~~IVV~GHt~CGav~ 154 (256)
+.|+|+||.++|=..
T Consensus 1 rnv~iiG~~~~GKTt 15 (213)
T cd04167 1 RNVAIAGHLHHGKTS 15 (213)
T ss_pred CcEEEEcCCCCCHHH
Confidence 468999999999533
No 63
>PRK14448 acylphosphatase; Provisional
Probab=23.08 E-value=65 Score=24.19 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVVA 46 (90)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999888643
No 64
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=22.98 E-value=42 Score=26.12 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=13.6
Q ss_pred eEEEEEEEccCCeEEEEe
Q 025179 228 ALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 228 ~V~G~vYDi~TG~v~~~~ 245 (256)
..|||-||+ ||+...+.
T Consensus 63 P~Hg~~fd~-~G~~~~~p 79 (115)
T cd03531 63 PFHDWRWGG-DGRCKAIP 79 (115)
T ss_pred CCCCCEECC-CCCEEECC
Confidence 359999999 99877654
No 65
>PRK14446 acylphosphatase; Provisional
Probab=22.91 E-value=1.2e+02 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.4
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dGsVei~~ 46 (88)
T PRK14446 27 ALGLVGHARNQADGSVEVVA 46 (88)
T ss_pred eCCeEEEEEECCCCCEEEEE
Confidence 68899999999999887654
No 66
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.80 E-value=76 Score=25.88 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 025179 125 GAGAAIEYAVLHLKVENIVVIGHSCCGGIK 154 (256)
Q Consensus 125 ~~~asLeyav~~L~v~~IVV~GHt~CGav~ 154 (256)
...+.+++-.+.+|++.+.++|||- |++-
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~ 57 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSM-GGML 57 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETH-HHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC-ChHH
Confidence 4667899999999999999999987 5433
No 67
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=22.61 E-value=56 Score=29.36 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.6
Q ss_pred cceEEEeccCCCCccc
Q 025179 139 VENIVVIGHSCCGGIK 154 (256)
Q Consensus 139 v~~IVV~GHt~CGav~ 154 (256)
.+.|.|+||.+||=.+
T Consensus 2 ~Rni~ivGh~~~GKTT 17 (267)
T cd04169 2 RRTFAIISHPDAGKTT 17 (267)
T ss_pred ccEEEEEcCCCCCHHH
Confidence 5789999999999744
No 68
>PRK14426 acylphosphatase; Provisional
Probab=22.40 E-value=74 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 57899999999999887643
No 69
>PRK14441 acylphosphatase; Provisional
Probab=22.37 E-value=92 Score=23.52 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=17.3
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~ 49 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEA 49 (93)
T ss_pred hcCcEEEEEECCCCEEEEEE
Confidence 68899999999999888643
No 70
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=22.23 E-value=56 Score=25.87 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=12.4
Q ss_pred ceEEEeccCCCCccc
Q 025179 140 ENIVVIGHSCCGGIK 154 (256)
Q Consensus 140 ~~IVV~GHt~CGav~ 154 (256)
+.|+|+|++++|=..
T Consensus 1 ~~i~~~G~~~~GKss 15 (168)
T cd01897 1 PTLVIAGYPNVGKSS 15 (168)
T ss_pred CeEEEEcCCCCCHHH
Confidence 579999999999743
No 71
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=21.98 E-value=6.3e+02 Score=23.94 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCcceEEEeccCC
Q 025179 128 AAIEYAVLHLKVENIVVIGHSC 149 (256)
Q Consensus 128 asLeyav~~L~v~~IVV~GHt~ 149 (256)
.+|++|.. .+++.|+++||-+
T Consensus 223 ~~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 223 SMLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred HHHHHHHH-cCCCEEEEEeEhH
Confidence 46888877 6999999999965
No 72
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=21.75 E-value=32 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.2
Q ss_pred eeEEEEEEEccCCeEE
Q 025179 227 LALKGAHYDFVNGKFE 242 (256)
Q Consensus 227 l~V~G~vYDi~TG~v~ 242 (256)
-..|||.||++||+..
T Consensus 61 Cp~H~~~f~~~~G~~~ 76 (98)
T cd03467 61 CPCHGSRFDLRTGEVV 76 (98)
T ss_pred eCCCCCEEeCCCccCc
Confidence 3459999999999964
No 73
>PRK14420 acylphosphatase; Provisional
Probab=21.44 E-value=81 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 025179 226 TLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~ 244 (256)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 27 KRKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 5779999999999988754
No 74
>PRK14449 acylphosphatase; Provisional
Probab=21.22 E-value=87 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 28 ~lgl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVVA 47 (90)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 57899999999999988653
No 75
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.19 E-value=79 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.8
Q ss_pred HHHHHhhcChhHHHHHhcCceeEE--EEEEEcc
Q 025179 207 VSLGNLLTYPFVRESVVKNTLALK--GAHYDFV 237 (256)
Q Consensus 207 ~qv~~L~~~p~i~~~v~~g~l~V~--G~vYDi~ 237 (256)
-.+++|.-||.+++ .|.|- ||+|-++
T Consensus 49 ~tiknlL~hPrl~k-----~L~iengG~VyYP~ 76 (107)
T COG4707 49 WTIKNLLLHPRLKK-----MLSIENGGWVYYPE 76 (107)
T ss_pred hHHHHHhcCchhhh-----heeeecCcEEEccc
Confidence 45788999999998 56666 9998775
No 76
>PRK14436 acylphosphatase; Provisional
Probab=21.01 E-value=86 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 29 ~l~l~G~V~N~~dG~Vei~~ 48 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAVL 48 (91)
T ss_pred HcCCEEEEEECCCCcEEEEE
Confidence 57799999999999888653
No 77
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=20.93 E-value=87 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dg~V~i~~ 48 (91)
T PF00708_consen 29 KLGLTGWVRNLPDGSVEIEA 48 (91)
T ss_dssp HTT-EEEEEE-TTSEEEEEE
T ss_pred HhCCceEEEECCCCEEEEEE
Confidence 46799999999999988654
No 78
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.92 E-value=1.2e+02 Score=23.39 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCcceEEEeccCCCCcccc
Q 025179 127 GAAIEYAVLHLKVENIVVIGHSCCGGIKG 155 (256)
Q Consensus 127 ~asLeyav~~L~v~~IVV~GHt~CGav~a 155 (256)
...|.-.....+-..|+|+|||==|++..
T Consensus 51 ~~~l~~~~~~~~~~~i~itGHSLGGalA~ 79 (140)
T PF01764_consen 51 LDALKELVEKYPDYSIVITGHSLGGALAS 79 (140)
T ss_dssp HHHHHHHHHHSTTSEEEEEEETHHHHHHH
T ss_pred HHHHHHHHhcccCccchhhccchHHHHHH
Confidence 34455555666678999999998777654
No 79
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=20.57 E-value=1.4e+02 Score=24.07 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 025179 101 QPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 155 (256)
Q Consensus 101 ~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CGav~a 155 (256)
.|+|.++-|+.-|-... ..|+-.+...|+++++|+|-.-..-|.+
T Consensus 60 ~~~~~vi~K~~~saf~~----------t~L~~~L~~~gi~~lii~G~~T~~CV~~ 104 (157)
T cd01012 60 FPDAPVIEKTSFSCWED----------EAFRKALKATGRKQVVLAGLETHVCVLQ 104 (157)
T ss_pred CCCCCceecccccCcCC----------HHHHHHHHhcCCCEEEEEEeeccHHHHH
Confidence 57887777776554432 2467678889999999999876555543
No 80
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=20.51 E-value=2.1e+02 Score=23.60 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccC
Q 025179 99 NFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHS 148 (256)
Q Consensus 99 ~~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt 148 (256)
...+||..+.++.=+-.. + ..|+.-+...|+++|||+|=.
T Consensus 84 ~~~~~~~v~~K~~~saF~--------~--t~L~~~L~~~gi~~vvi~G~~ 123 (179)
T cd01015 84 APQEDEMVLVKKYASAFF--------G--TSLAATLTARGVDTLIVAGCS 123 (179)
T ss_pred CCCCCCEEEecCccCCcc--------C--CcHHHHHHHcCCCEEEEeeec
Confidence 445778666665322221 1 247777889999999999853
No 81
>PRK14425 acylphosphatase; Provisional
Probab=20.44 E-value=89 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 025179 226 TLALKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~~ 245 (256)
++.|.||+.+...|.|+.+-
T Consensus 31 ~~gl~G~V~N~~dGsVei~~ 50 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTALI 50 (94)
T ss_pred HhCCEEEEEECCCCeEEEEE
Confidence 46789999999999998653
No 82
>PRK14434 acylphosphatase; Provisional
Probab=20.31 E-value=97 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=16.8
Q ss_pred cee-EEEEEEEccCCeEEEEe
Q 025179 226 TLA-LKGAHYDFVNGKFELWD 245 (256)
Q Consensus 226 ~l~-V~G~vYDi~TG~v~~~~ 245 (256)
++. |.||+.+...|.|+.+-
T Consensus 27 ~lg~l~G~V~N~~dGsVei~~ 47 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEILA 47 (92)
T ss_pred HcCCcEEEEEECCCCCEEEEE
Confidence 577 99999999999887644
No 83
>PRK14444 acylphosphatase; Provisional
Probab=20.27 E-value=86 Score=23.63 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.5
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 025179 226 TLALKGAHYDFVNGKFELW 244 (256)
Q Consensus 226 ~l~V~G~vYDi~TG~v~~~ 244 (256)
++.|.||+.++..|.|+.+
T Consensus 29 ~lgl~G~V~N~~dG~Vei~ 47 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5789999999999988754
No 84
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=20.06 E-value=2.1e+02 Score=24.30 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=27.9
Q ss_pred CCCCcEEEEeccCCcCCCCCccccchhHHHHHHHHHhcCcceEEEeccCCCC
Q 025179 100 FQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCG 151 (256)
Q Consensus 100 ~~~GdlfViRNaGN~V~~~d~~~~~~~~asLeyav~~L~v~~IVV~GHt~CG 151 (256)
..+||.++-++--+-.... -|+.-+..+|+++|||+|=+--.
T Consensus 113 ~~~~d~vi~K~~~saF~~T----------~L~~~Lr~~gi~~lii~Gv~T~~ 154 (203)
T cd01013 113 PQPDDTVLTKWRYSAFKRS----------PLLERLKESGRDQLIITGVYAHI 154 (203)
T ss_pred CCCCCEEEeCCCcCCcCCC----------CHHHHHHHcCCCEEEEEEeccCh
Confidence 3578877767655444321 25556888999999999964433
Done!