Citrus Sinensis ID: 025180
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y5N5 | 214 | HemK methyltransferase fa | yes | no | 0.757 | 0.906 | 0.432 | 9e-36 | |
| Q9UT94 | 231 | eRF1 methyltransferase ca | yes | no | 0.800 | 0.887 | 0.334 | 1e-24 | |
| Q58338 | 197 | Putative protein methyltr | yes | no | 0.718 | 0.934 | 0.295 | 4e-20 | |
| Q03920 | 221 | eRF1 methyltransferase ca | yes | no | 0.757 | 0.877 | 0.294 | 7e-16 | |
| O28490 | 177 | Putative protein methyltr | yes | no | 0.582 | 0.841 | 0.352 | 1e-09 | |
| O66506 | 281 | Release factor glutamine | yes | no | 0.523 | 0.476 | 0.302 | 6e-08 | |
| A1JJ89 | 347 | Ribosomal RNA small subun | yes | no | 0.277 | 0.204 | 0.316 | 3e-07 | |
| Q748B2 | 284 | Release factor glutamine | yes | no | 0.468 | 0.422 | 0.276 | 6e-07 | |
| Q68VR6 | 518 | Bifunctional methyltransf | yes | no | 0.585 | 0.289 | 0.282 | 9e-07 | |
| Q66EW9 | 347 | Ribosomal RNA small subun | yes | no | 0.277 | 0.204 | 0.303 | 1e-06 |
| >sp|Q9Y5N5|HEMK2_HUMAN HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L++AL A L +C+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLNALEAAAAELAGVE--ICLEVGSGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL VD++V NPPYV TP EVG
Sbjct: 76 TDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG+NGR V+D+ P LLS +G YLVT+ N+P +I M KG
Sbjct: 136 HGIEAAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKFWRD 214
+ R +E L ++KF +
Sbjct: 196 ALSRQAGQETLSVLKFTKS 214
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Heterodimeric methyltransferase that catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. ETF1 needs to be complexed to ERF3 in its GTP-bound form to be efficiently methylated. May play a role in the modulation of arsenic-induced toxicity. May be involved in the conversion of monomethylarsonous acid (3+) into the less toxic dimethylarsonic acid. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9UT94|MTQ2_SCHPO eRF1 methyltransferase catalytic subunit mtq2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtq2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 5 TAQIRLVSSHPEVYEPCDDSFALVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLA 61
T+Q+RL +VYEP +D+FAL+DAL D L E +L E+GCGSG + L
Sbjct: 7 TSQLRL-KEFQDVYEPAEDTFALLDALEKDAKKLRQMAEMKNLLTAEIGCGSGCASSFLK 65
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKT-LEAHNVHAD------LINTDIASGLEKRLAG 114
+ + P V ++ +DI+ A ++ T L ++ D + T G+ RL
Sbjct: 66 SGILKNKPIVHFM-SDISNSACRASKITALNNRELYKDDNGLFITVQTSFLDGI--RLGN 122
Query: 115 LVDVMVVNPPYVPTPEDEVGREG--IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
VD+++ NPPYVPT +E+ E IASAWAGG +G V +L +LS+ G Y+V
Sbjct: 123 GVDILIFNPPYVPTEFEEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDGVFYMV 182
Query: 173 TLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213
+ N IC + + G+ ++R E L I++ +R
Sbjct: 183 AVARNKLHSICEILQKDGFIVNETLKRKAGRETLSILRIYR 223
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Methylates eRF1 on 'Gln-182' using S-adenosyl L-methionine as methyl donor. eRF1 needs to be complexed to eRF3 in its GTP-bound form to be efficiently methylated. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q58338|Y928_METJA Putative protein methyltransferase MJ0928 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0928 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
HPEVYEP +DS L+ NLV+ +E+G G+G + + A +++ GV
Sbjct: 13 HPEVYEPAEDSILLLK-------NLVDVKNKDVLEIGVGTGLISIACAKKGAKKIVGV-- 63
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
DINPYAV++ ++ + +NV+ +D L + + G DV++ NPPY+PT EDE
Sbjct: 64 ---DINPYAVKLAKENAKLNNVNISFFESD----LFENVTGKFDVILFNPPYLPTSEDEK 116
Query: 134 GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193
+ A+ GG++GR ++D+ + L K G + ++ + + ++ G+
Sbjct: 117 IDSYLNFAFDGGKDGREILDRFIYELPNYLKKGGVVQILQSSLTGEKETINKLKPLGFKV 176
Query: 194 RIVVQRSTEEENLHIIKFWR 213
I + E L +I WR
Sbjct: 177 EISARLKVPFEELMVINAWR 196
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Putative protein methyltransferase using S-adenosyl-L-methionine as the methyl donor. May methylate a Gln residue in target proteins. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subunit MTQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTQ2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHH----PVLCMEVGCGSGYVITSLALMLGQEVP 69
+ +VYEP +DSF ++D L + L + ++C E+G GSG V T LM + +P
Sbjct: 11 YDKVYEPAEDSFLILDCLEKEHDFLKQKFGNRLAIVC-EIGSGSGIVTT--FLMQNKIIP 67
Query: 70 GVQ--YIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPP 124
++A DINP+A+E T T + ++ + ++I D+ S + VDV++ NPP
Sbjct: 68 QENSIHLAVDINPWALEATLDTAKLNSCKSSFLEVIQADLNSSIRN---NQVDVLIFNPP 124
Query: 125 YVPTP--EDEVGREGIASAWA-----GGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177
YVP D G A W GG++G A+ DK+L +++LS G Y++ N
Sbjct: 125 YVPAECVPDVPGSREEADQWLDLALLGGKDGMAITDKLLRQLEQILSPDGVAYILFCARN 184
Query: 178 DPSQICLQMMEK-GYAARIVVQRSTEEENLHIIKFWR 213
P ++ + ++ + +++ R E L + F R
Sbjct: 185 KPKEVIKRFVDTYKWNVKLIETRKAGWEVLSVYSFTR 221
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Methylates eRF1 on 'Gln-182' using S-adenosyl L-methionine as methyl donor. eRF1 needs to be complexed to eRF3 in its GTP-bound form to be efficiently methylated. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O28490|Y1784_ARCFU Putative protein methyltransferase AF_1784 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1784 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 21/170 (12%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNVHADLINTDIA 105
+EVG GSG+V L G+ + TDI+P+A +E+ RK L D++ TDIA
Sbjct: 27 IEVGAGSGFVAERLK---GK---CKCILTTDISPFAAMELRRKGL-------DVVMTDIA 73
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGR-EGIASAWAGGENGRAVIDKILPSADKLLS 164
G+ K+ + +++ NPPYV EDE+ R + + A GG+ G VI K L S D++++
Sbjct: 74 KGIRKKFS----LVLFNPPYVEL-EDELRRGDWLDVAIDGGKKGVKVIKKFLDSLDEIMA 128
Query: 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRD 214
+RG L+ + N+P L + E+G+ IV +R E L IK W++
Sbjct: 129 ERGRAILIASSQNEPDVFDL-IDERGFRYEIVGERGLFFEKLFAIKIWKE 177
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Putative protein methyltransferase using S-adenosyl-L-methionine as the methyl donor. May methylate a Gln residue in target proteins. Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
| >sp|O66506|PRMC_AQUAE Release factor glutamine methyltransferase OS=Aquifex aeolicus (strain VF5) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
E+G G+G + +L + E P + ATD+NP AVE+T++ + H V D + + +
Sbjct: 118 FELGSGTGCISINLLI----ERPKLVMYATDVNPDAVELTKENAKLHKVD-DRLFVFLGN 172
Query: 107 GLEKRLAGLVDVMVVNPPYVPT------PEDEVGREGIASAWAGGENGRAVIDKILPSAD 160
E D +V NPPY+P PE EV +EG S GG+ G + I
Sbjct: 173 AFEPVKGMKFDFIVSNPPYIPENFWEILPE-EVKKEGYTSL-IGGKKGWEFYELIAEEGT 230
Query: 161 KLLSKRGWLYLVTLTANDPSQICLQMMEK 189
K L + G++ L +D ++ +++EK
Sbjct: 231 KHLKENGFIALE--IGHDQGKVVKELLEK 257
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|A1JJ89|RSMC_YERE8 Ribosomal RNA small subunit methyltransferase C OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL A+N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LACVLAQQSPKIKWTLSDVSAAAIEASRATLAANNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
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Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle. Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 2 |
| >sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101
H +++G GSG + +LA +++P Q + + +P A+ + ++ E H L
Sbjct: 117 HAAAVLDIGVGSGCIAVALA----KQLPHAQVVGVEQSPGAIALAQRNAERHGARVTLFE 172
Query: 102 TDIASGL-EKRLAGLVDVMVVNPPYVPTP-----EDEVGREGIASAWAGGENGRAVIDKI 155
+ L ++R D++V NPPY+PT + EV +A GG +G I
Sbjct: 173 GSLFEPLGDQRF----DLIVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLI 228
Query: 156 LPSADKLLSKRGWL 169
+P+A + L+ GWL
Sbjct: 229 VPAAPEYLNPGGWL 242
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 34 DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
D + ++H+ +L E+G GSG + SL E+P IATDI+ A++V + H
Sbjct: 126 DSVKTIQHYNIL--ELGTGSGCIAISLLC----ELPNTSVIATDISVDAIKVAKSNTIKH 179
Query: 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGIAS----AWAGGENG 148
NV D I ++ EK D++V NPPY+ E E+ E I A E+G
Sbjct: 180 NV-TDRIQIIHSNWFEKLNKQKFDLIVSNPPYISHSEKLEMAIETINYEPHIALFAEEDG 238
Query: 149 RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191
I +A + L G + ++ + + ++C + GY
Sbjct: 239 LEAYSIIAKNAKQFLKPNGKI-ILEIGFSQAEKVCQIFLNYGY 280
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Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q66EW9|RSMC_YERPS Ribosomal RNA small subunit methyltransferase C OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rsmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G LA +L Q+ P +++ +D++ A+E +R TL +N+ A +I +++ S
Sbjct: 201 LDVGCGAGV----LASVLAQQSPKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R ++++ NPP+
Sbjct: 257 DIKGRF----EMIISNPPF 271
|
Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle. Yersinia pseudotuberculosis (taxid: 633) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 255583924 | 256 | n6-DNA-methyltransferase, putative [Rici | 0.996 | 0.996 | 0.753 | 1e-107 | |
| 449438254 | 256 | PREDICTED: hemK methyltransferase family | 0.988 | 0.988 | 0.724 | 1e-106 | |
| 307136455 | 256 | N6-DNA-methyltransferase [Cucumis melo s | 0.988 | 0.988 | 0.724 | 1e-106 | |
| 87241257 | 971 | SAM (and some other nucleotide) binding | 0.964 | 0.254 | 0.726 | 1e-104 | |
| 357469751 | 1026 | Pentatricopeptide repeat-containing prot | 0.968 | 0.241 | 0.723 | 1e-104 | |
| 224053643 | 228 | predicted protein [Populus trichocarpa] | 0.871 | 0.978 | 0.798 | 1e-102 | |
| 255647950 | 234 | unknown [Glycine max] | 0.859 | 0.940 | 0.795 | 1e-100 | |
| 9280295 | 246 | N6-DNA-methyltransferase-like protein [A | 0.871 | 0.906 | 0.735 | 2e-91 | |
| 15231240 | 278 | S-adenosyl-L-methionine-dependent methyl | 0.871 | 0.802 | 0.735 | 3e-91 | |
| 297829886 | 278 | hypothetical protein ARALYDRAFT_318122 [ | 0.843 | 0.776 | 0.754 | 3e-90 |
| >gi|255583924|ref|XP_002532710.1| n6-DNA-methyltransferase, putative [Ricinus communis] gi|223527556|gb|EEF29677.1| n6-DNA-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/256 (75%), Positives = 223/256 (87%), Gaps = 1/256 (0%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
MS R AQIRLVSSHPEVYEPCDDSFALVDALLADRINL++H+P +C EVGCGSGYVITSL
Sbjct: 1 MSSRIAQIRLVSSHPEVYEPCDDSFALVDALLADRINLLDHNPKVCFEVGCGSGYVITSL 60
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
ALML Q++PGV YIATD+NP+AV VTR+TLEAH VHA+LI+TDIASGLEKRL G+VDVMV
Sbjct: 61 ALMLRQQIPGVYYIATDLNPHAVRVTRETLEAHGVHAELISTDIASGLEKRLQGMVDVMV 120
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPEDEVG EGIASAWAGGENGR VID+IL AD LLS++GWLY+VT+T NDPS
Sbjct: 121 VNPPYVPTPEDEVGCEGIASAWAGGENGRKVIDRILHVADCLLSEKGWLYMVTITCNDPS 180
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAA-PVGVMDTLL 239
Q+CL+M +KGYA+RIVVQRSTEEE+LHIIKFWRD D Q D K + P VM++L+
Sbjct: 181 QLCLKMRKKGYASRIVVQRSTEEESLHIIKFWRDSDTQFDTKKTLTTNKTIPERVMESLV 240
Query: 240 SQVHRLSFRRSASSNN 255
SQ+ +LSF R+ SSN+
Sbjct: 241 SQLPQLSFWRNGSSNS 256
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438254|ref|XP_004136904.1| PREDICTED: hemK methyltransferase family member 2-like [Cucumis sativus] gi|449529866|ref|XP_004171919.1| PREDICTED: hemK methyltransferase family member 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 221/254 (87%), Gaps = 1/254 (0%)
Query: 2 SLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLA 61
S RTAQI LVSSH EVYEPCDDSFALVDALLAD++ L+ HHP LC+E GCGSGYVITSLA
Sbjct: 3 SFRTAQIPLVSSHREVYEPCDDSFALVDALLADQVKLLNHHPTLCLEFGCGSGYVITSLA 62
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121
L+LG+E YIATDINP+A+ VT++TLEAH +HA+L+ TDIASGLEKRLAG VDV+VV
Sbjct: 63 LILGKEASATHYIATDINPHAIRVTQETLEAHGLHAELVCTDIASGLEKRLAGSVDVLVV 122
Query: 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181
NPPYVPTPEDEVG++GIASAWAGGENGR+VID+ILP AD LLS +GWLY+VTLTAN+P+Q
Sbjct: 123 NPPYVPTPEDEVGQDGIASAWAGGENGRSVIDRILPVADVLLSDKGWLYMVTLTANNPAQ 182
Query: 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQ 241
ICLQM EKGYA+RIVVQRSTEEE+LH+IKFW+D D+Q+D KD +K P V+++L+SQ
Sbjct: 183 ICLQMREKGYASRIVVQRSTEEESLHVIKFWKDADLQVDGKDST-HKTGPGKVVESLISQ 241
Query: 242 VHRLSFRRSASSNN 255
+ RLSF R+ S+ +
Sbjct: 242 LPRLSFWRNNSNTS 255
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136455|gb|ADN34260.1| N6-DNA-methyltransferase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/254 (72%), Positives = 220/254 (86%), Gaps = 1/254 (0%)
Query: 2 SLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLA 61
S RTAQI LVSSH EVYEPCDDSFALVDALLADR+ L+ H+P LC+E GCGSGYVITSLA
Sbjct: 3 SFRTAQIHLVSSHREVYEPCDDSFALVDALLADRVKLLNHNPTLCLEFGCGSGYVITSLA 62
Query: 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121
L+LG+E YIATDINP+A+ VT++TLEAH +HA+L+ TD+ASGLEKRLAG VDV+VV
Sbjct: 63 LILGKEASATHYIATDINPHAIRVTQETLEAHGLHAELVCTDLASGLEKRLAGSVDVLVV 122
Query: 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181
NPPYVPTPEDEVG++GIASAWAGGENGR+VID+ILP AD LLS +GWLY+VTLTAN+P Q
Sbjct: 123 NPPYVPTPEDEVGQDGIASAWAGGENGRSVIDRILPVADVLLSDKGWLYMVTLTANNPFQ 182
Query: 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQ 241
ICLQM EKGYA+RIVVQRSTEEE+LH+IKFW+D D+Q+D KD +K P V+++L+SQ
Sbjct: 183 ICLQMREKGYASRIVVQRSTEEESLHVIKFWKDADLQVDGKDST-HKTGPGRVVESLISQ 241
Query: 242 VHRLSFRRSASSNN 255
+ RLSF R+ S+ N
Sbjct: 242 LPRLSFWRNNSNTN 255
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/252 (72%), Positives = 215/252 (85%), Gaps = 5/252 (1%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+TAQIRLVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 723 KTAQIRLVSSHNEVYEPCDDSFALVDALLADRTNLLEHHPALCMEIGCGSGYVITSLALI 782
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQE GV YIATDINP+AV+VTR+T+EAH V A+LI TDIASGLE RLAG++DVMVVNP
Sbjct: 783 LGQEGSGVNYIATDINPHAVKVTRETIEAHGVDAELIITDIASGLENRLAGMIDVMVVNP 842
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPE EVG EGI ++WAGGENGR+VID+ILP AD LLS++GWLY+VTLTAN+PS+IC
Sbjct: 843 PYVPTPEAEVGSEGITASWAGGENGRSVIDRILPVADALLSEKGWLYMVTLTANNPSEIC 902
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQVH 243
L+M +KGY ++IVVQRSTEEE+LHIIKFWRD D +D N + G M +LLSQV
Sbjct: 903 LEMRKKGYTSKIVVQRSTEEESLHIIKFWRDLDNGLD-----ENGQSTSGFMGSLLSQVP 957
Query: 244 RLSFRRSASSNN 255
+S+ R +S+N
Sbjct: 958 LISYLRGNNSDN 969
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/253 (72%), Positives = 215/253 (84%), Gaps = 5/253 (1%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+TAQIRLVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 778 KTAQIRLVSSHNEVYEPCDDSFALVDALLADRTNLLEHHPALCMEIGCGSGYVITSLALI 837
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQE GV YIATDINP+AV+VTR+T+EAH V A+LI TDIASGLE RLAG++DVMVVNP
Sbjct: 838 LGQEGSGVNYIATDINPHAVKVTRETIEAHGVDAELIITDIASGLENRLAGMIDVMVVNP 897
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPE EVG EGI ++WAGGENGR+VID+ILP AD LLS++GWLY+VTLTAN+PS+IC
Sbjct: 898 PYVPTPEAEVGSEGITASWAGGENGRSVIDRILPVADALLSEKGWLYMVTLTANNPSEIC 957
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKDIVPNKAAPVGVMDTLLSQVH 243
L+M +KGY ++IVVQRSTEEE+LHIIKFWRD D +D N + G M +LLSQV
Sbjct: 958 LEMRKKGYTSKIVVQRSTEEESLHIIKFWRDLDNGLD-----ENGQSTSGFMGSLLSQVP 1012
Query: 244 RLSFRRSASSNNN 256
+S+ R +S+N
Sbjct: 1013 LISYLRGNNSDNK 1025
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053643|ref|XP_002297908.1| predicted protein [Populus trichocarpa] gi|222845166|gb|EEE82713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/223 (79%), Positives = 202/223 (90%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
MS +TAQIRL+SSHPEVYEPCDDSFALVDALLADR N+++H P LC+EVGCGSGYVI SL
Sbjct: 6 MSPKTAQIRLMSSHPEVYEPCDDSFALVDALLADRTNILDHCPRLCLEVGCGSGYVIASL 65
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
ALMLGQE+PGV Y ATDINP+A+ VTR+TL+AH V A+L+ DIASGLEKRLAG+VDVMV
Sbjct: 66 ALMLGQELPGVYYFATDINPHALRVTRETLDAHAVDAELMCMDIASGLEKRLAGMVDVMV 125
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTP+ EVGREGIASAWAGGENGR VID+ILP AD+LLS +GWLY+VTLT NDPS
Sbjct: 126 VNPPYVPTPDYEVGREGIASAWAGGENGRIVIDRILPVADRLLSDKGWLYMVTLTTNDPS 185
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
QICL M +KGYA+RIVVQRSTEEE+LHIIKFWRD DIQ+D K+
Sbjct: 186 QICLLMRKKGYASRIVVQRSTEEESLHIIKFWRDSDIQLDTKE 228
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647950|gb|ACU24432.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 197/220 (89%)
Query: 4 RTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
RTAQI LVSSH EVYEPCDDSFALVDALLADR NL+EHHP LCME+GCGSGYVITSLAL+
Sbjct: 9 RTAQIHLVSSHQEVYEPCDDSFALVDALLADRNNLLEHHPTLCMEIGCGSGYVITSLALI 68
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
LGQEV G+ YIATDINP+AV VT +TLEAH V A+LI TDIASGLE RLAGLVDVMVVNP
Sbjct: 69 LGQEVCGINYIATDINPHAVRVTHETLEAHGVGAELIVTDIASGLEDRLAGLVDVMVVNP 128
Query: 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
PYVPTPEDEVG EGI S+WAGGENGR+VI+KILP AD+LLS++GWLY+VTLT N+P +IC
Sbjct: 129 PYVPTPEDEVGVEGITSSWAGGENGRSVINKILPVADRLLSEKGWLYMVTLTENNPFEIC 188
Query: 184 LQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
QM +KGYA++IVVQRSTEEE+LHIIKFWRDFD + + D
Sbjct: 189 HQMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEANETD 228
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9280295|dbj|BAB01750.1| N6-DNA-methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 1 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 60
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 61 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 120
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 121 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 180
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 181 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 223
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231240|ref|NP_187952.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|18377858|gb|AAL67115.1| AT3g13440/MRP15_7 [Arabidopsis thaliana] gi|20453313|gb|AAM19895.1| AT3g13440/MRP15_7 [Arabidopsis thaliana] gi|332641833|gb|AEE75354.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 93 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 255
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829886|ref|XP_002882825.1| hypothetical protein ARALYDRAFT_318122 [Arabidopsis lyrata subsp. lyrata] gi|297328665|gb|EFH59084.1| hypothetical protein ARALYDRAFT_318122 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/216 (75%), Positives = 183/216 (84%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+ATD NP A VT++TL+AH V AD+I DIAS LEKRL+G VDV+V
Sbjct: 93 ILLLKNEVPGVHYLATDTNPIATRVTKETLQAHGVDADVICADIASVLEKRLSGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFD 216
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKD 248
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| TAIR|locus:2092900 | 278 | AT3G13440 [Arabidopsis thalian | 0.871 | 0.802 | 0.735 | 3.8e-85 | |
| DICTYBASE|DDB_G0292048 | 257 | DDB_G0292048 "N(6)-adenine-spe | 0.777 | 0.774 | 0.447 | 9.1e-45 | |
| UNIPROTKB|A4FV35 | 214 | N6AMT1 "N6AMT1 protein" [Bos t | 0.746 | 0.892 | 0.464 | 3.7e-39 | |
| RGD|1311843 | 214 | N6amt1 "N-6 adenine-specific D | 0.746 | 0.892 | 0.454 | 4.8e-39 | |
| UNIPROTKB|Q9Y5N5 | 214 | N6AMT1 "HemK methyltransferase | 0.746 | 0.892 | 0.438 | 2.4e-37 | |
| UNIPROTKB|E1C233 | 217 | N6AMT1 "Uncharacterized protei | 0.753 | 0.889 | 0.418 | 3.9e-37 | |
| ZFIN|ZDB-GENE-040718-206 | 219 | n6amt1 "N-6 adenine-specific D | 0.753 | 0.881 | 0.413 | 2.1e-36 | |
| WB|WBGene00016341 | 221 | C33C12.9 [Caenorhabditis elega | 0.792 | 0.918 | 0.408 | 7.2e-36 | |
| UNIPROTKB|J9P1B3 | 235 | N6AMT1 "Uncharacterized protei | 0.515 | 0.561 | 0.496 | 1.6e-29 | |
| FB|FBgn0031454 | 224 | CG9960 [Drosophila melanogaste | 0.734 | 0.839 | 0.391 | 5.7e-27 |
| TAIR|locus:2092900 AT3G13440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 164/223 (73%), Positives = 187/223 (83%)
Query: 1 MSLRTAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSL 60
M R A IRLVSSH EVYEPCDDSFALVDALLADR NL+EH+P +CME+GCGSGYVITSL
Sbjct: 33 MPPRIAAIRLVSSHREVYEPCDDSFALVDALLADRTNLIEHNPKICMEIGCGSGYVITSL 92
Query: 61 ALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120
L+L EVPGV Y+A D NP A VT++TLEAH V+AD+I D+A+GLEKRLAG VDV+V
Sbjct: 93 ILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKRLAGSVDVIV 152
Query: 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
VNPPYVPTPE EVG EGIASAWAGGENGR VIDKILP D LLS++GW YLVTLT+N P+
Sbjct: 153 VNPPYVPTPEYEVGMEGIASAWAGGENGRTVIDKILPVVDLLLSEKGWFYLVTLTSNFPA 212
Query: 181 QICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFDIQMDAKD 223
+ICL M +KGYA+RIVVQRSTEEENL I+KFWRD D + K+
Sbjct: 213 EICLMMRKKGYASRIVVQRSTEEENLVILKFWRDKDEESQDKE 255
|
|
| DICTYBASE|DDB_G0292048 DDB_G0292048 "N(6)-adenine-specific DNA methyltransferase 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 90/201 (44%), Positives = 133/201 (66%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
+ +VYEP +DS+ +D+L D N+ E P + +E+G GSG+VIT LA +LG + Y
Sbjct: 26 YKDVYEPSEDSYLFIDSLQKDYENIKEMKPFIMLEIGSGSGFVITFLAKLLGND-GSKYY 84
Query: 74 IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
++TDINP A + KT +NVH D++NT S +E RL G +D+++ NPPYVPTP +EV
Sbjct: 85 MSTDINPKAAIASSKTSIENNVHLDVLNTSFVSSIE-RLKGSIDILLFNPPYVPTPSEEV 143
Query: 134 GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193
GI ++WAGG NGR VIDK+LP +LSK+G+ Y+V + N P Q+ + E G++
Sbjct: 144 NEGGIVASWAGGINGREVIDKLLPQIPSILSKKGFFYIVLVQENKPKQVISILGEYGFSY 203
Query: 194 RIVVQRSTEEENLHIIKFWRD 214
++V +R E L+IIKF+R+
Sbjct: 204 KVVGKRKARNELLYIIKFYRE 224
|
|
| UNIPROTKB|A4FV35 N6AMT1 "N6AMT1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 91/196 (46%), Positives = 116/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL A L +C+EVG GSG V LA ++G P Y+
Sbjct: 21 DVYEPAEDTFLLLDALEAAAAELTGVE--ICLEVGSGSGVVSAFLASVIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+NP A T +T + VH I TD+ GL RL VD++V NPPYV TP +EVG
Sbjct: 76 TDVNPEAAACTLETARCNKVHIQPIITDLVKGLLPRLKESVDLLVFNPPYVVTPPEEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG NGR VID+ LP A LLS RG YLVT+ N+P +I M KG
Sbjct: 136 RGIQAAWAGGRNGREVIDRFLPLAPDLLSPRGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
V+ R +E L ++KF
Sbjct: 196 VLSRQAGQEMLSVLKF 211
|
|
| RGD|1311843 N6amt1 "N-6 adenine-specific DNA methyltransferase 1 (putative)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 89/196 (45%), Positives = 116/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL A L LC+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLDALEAAAAELAGVE--LCLEVGAGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL G VD++V NPPYV TP +EVG
Sbjct: 76 TDINPKAAACTLETARCNRVHLQPVITDLVQGLLPRLKGKVDLLVFNPPYVVTPPEEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG NGR V+D+ P A +LLS RG YLVT+ N+P +I M +G
Sbjct: 136 HGIEAAWAGGRNGREVMDRFFPLASQLLSPRGLFYLVTIKENNPEEIFKIMKTRGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
+ R +E L +++F
Sbjct: 196 ALCRQAGQETLSVLRF 211
|
|
| UNIPROTKB|Q9Y5N5 N6AMT1 "HemK methyltransferase family member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 86/196 (43%), Positives = 113/196 (57%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L++AL A L +C+EVG GSG V LA M+G P Y+
Sbjct: 21 DVYEPAEDTFLLLNALEAAAAELAGVE--ICLEVGSGSGVVSAFLASMIG---PQALYMC 75
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + VH + TD+ GL RL VD++V NPPYV TP EVG
Sbjct: 76 TDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGS 135
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI +AWAGG+NGR V+D+ P LLS +G YLVT+ N+P +I M KG
Sbjct: 136 HGIEAAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTT 195
Query: 196 VVQRSTEEENLHIIKF 211
+ R +E L ++KF
Sbjct: 196 ALSRQAGQETLSVLKF 211
|
|
| UNIPROTKB|E1C233 N6AMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 82/196 (41%), Positives = 117/196 (59%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+VYEP +D+F L+DAL D L + +C+E+G GSG V LA ++G Y+
Sbjct: 22 DVYEPAEDTFLLLDALERDAAQLRQAGIDICLEIGSGSGVVSAFLASIIGASA---LYLC 78
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A T +T + +NVH + TD+ GL RL G+VD+++ NPPYV TP +EV
Sbjct: 79 TDINPMAAYCTLETAQLNNVHLQPVITDLVKGLSPRLNGMVDLLLFNPPYVVTPSEEVQS 138
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GI ++WAGG+ GR V+D++ P LLS G YLVT+ N+P +I M + G
Sbjct: 139 HGIEASWAGGKKGREVMDRVFPLVADLLSTGGLFYLVTIKENNPDEILETMTKHGLEGTR 198
Query: 196 VVQRSTEEENLHIIKF 211
++ R +E L I+KF
Sbjct: 199 LLSRQAGQEMLTILKF 214
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| ZFIN|ZDB-GENE-040718-206 n6amt1 "N-6 adenine-specific DNA methyltransferase 1 (putative)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 81/196 (41%), Positives = 115/196 (58%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
EVYEP +DSF L+DAL D L + P +C+EVG GSG + LA ++G + YI
Sbjct: 17 EVYEPAEDSFLLMDALEKDADRLKDSRPCVCLEVGSGSGVISAFLASLIGAQA---LYIC 73
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+N A + + +T +N+H + TD+ L RL G VDV+V NPPYV TP +EVG
Sbjct: 74 TDVNADAAQCSMQTSILNNLHVQPVVTDLVECLLPRLNGKVDVLVFNPPYVATPSEEVGS 133
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
G+ ++WAGG +GR V+++ P LLS+ G YLVT++ NDP I + G +
Sbjct: 134 HGVEASWAGGLHGREVMNRFFPMIPDLLSEHGLFYLVTVSDNDPEGIVDLLARSGLDGHL 193
Query: 196 VVQRSTEEENLHIIKF 211
+ R E L I++F
Sbjct: 194 CLTRQAGRETLTILRF 209
|
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| WB|WBGene00016341 C33C12.9 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 87/213 (40%), Positives = 131/213 (61%)
Query: 1 MSLRTAQIRL--VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVIT 58
MS+ T Q RL + +H +VYEP +D+F L+DA+ D + P L +E+GCGSG V T
Sbjct: 1 MSMPTPQYRLQAIRAH-DVYEPAEDTFLLIDAIEKDIKEIRSRDPKLVLEIGCGSGVVST 59
Query: 59 SLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118
+ LG V V ATD+NP+A++VT +T + +++ D++ TD+ +GLE L G VDV
Sbjct: 60 FVNQALGGNVTSV---ATDLNPHALDVTLETAKLNDIKIDVVRTDLFAGLEN-LLGKVDV 115
Query: 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178
++ NPPYVPT DE + I +AGG GR+ +D++LP +LLS RG YLV L +ND
Sbjct: 116 LLFNPPYVPT--DEEPKSNIELTYAGGRTGRSTLDRLLPRVPELLSPRGVFYLVALHSND 173
Query: 179 PSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211
+ + E+ + ++R E+L+I+KF
Sbjct: 174 IPALLKEHSEQ-MTVSVSMERRCGIEHLYILKF 205
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| UNIPROTKB|J9P1B3 N6AMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 67/135 (49%), Positives = 85/135 (62%)
Query: 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+C+EVG GSG V LA M+G P Y+ TDINP A T +T +NV + TD+
Sbjct: 37 ICLEVGSGSGVVSAFLASMIG---PQALYMCTDINPEAAACTLETAHCNNVSIQPVITDL 93
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164
+GL RL VD++V NPPYV TP +EVG G+ +AWAGG NGR V+D+ P A LLS
Sbjct: 94 VNGLLPRLKEKVDLLVFNPPYVVTPPEEVGSHGVEAAWAGGRNGREVMDRFFPLAPDLLS 153
Query: 165 KRGWLYLVTLTANDP 179
RG YLVT+ N+P
Sbjct: 154 PRGLFYLVTIKENNP 168
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| FB|FBgn0031454 CG9960 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 83/212 (39%), Positives = 116/212 (54%)
Query: 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY-IA 75
VYEP +DSF L+DAL D L P LC+E+G GSG +IT+LA +++ G +A
Sbjct: 17 VYEPAEDSFLLLDALEKDLEYLDRLQPSLCVELGSGSGVIITALA----KKLAGFSLCLA 72
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TDINP A TR+T + D I +A L R VDV++ NPPYV T ++E+
Sbjct: 73 TDINPKACNATRRTATRNGARLDSIRCSLADALRPRS---VDVLLFNPPYVVTSDEELQT 129
Query: 136 EGIAS------------AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183
+ S +WAGG++GR V D +L D +LS RG LYL+ L N P +I
Sbjct: 130 QQFDSHSESSTDRNLVFSWAGGQDGRRVTDILLKQLDDILSPRGVLYLLLLRENKPEEI- 188
Query: 184 LQMMEKGYAARIV--VQRSTEEENLHIIKFWR 213
++ +E G R V ++R E+L I+K R
Sbjct: 189 IKYLE-GLQFRAVKFMERRIPGEHLCILKVTR 219
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UT94 | MTQ2_SCHPO | 2, ., 1, ., 1, ., - | 0.3348 | 0.8007 | 0.8874 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013432001 | SubName- Full=Chromosome undetermined scaffold_478, whole genome shotgun sequence; (256 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00028106001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (308 aa) | • | • | 0.759 | ||||||
 | GSVIVG00036861001 | SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (312 aa) | • | • | 0.697 | ||||||
 | GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | 0.581 | |||||||
 | GSVIVG00029422001 | SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_48, whole genome shot [...] (424 aa) | • | 0.420 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 8e-36 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 9e-32 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 6e-29 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 2e-22 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 6e-18 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 2e-17 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 2e-13 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-12 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 5e-09 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 5e-09 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 9e-09 | |
| TIGR03704 | 251 | TIGR03704, PrmC_rel_meth, putative protein-(glutam | 2e-08 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 6e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-07 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 7e-07 | |
| PRK01544 | 506 | PRK01544, PRK01544, bifunctional N5-glutamine S-ad | 1e-06 | |
| PRK09489 | 342 | PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltr | 1e-06 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-05 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 5e-05 | |
| PRK14966 | 423 | PRK14966, PRK14966, unknown domain/N5-glutamine S- | 8e-05 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-04 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-04 | |
| TIGR00308 | 374 | TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran | 3e-04 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 3e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.001 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 0.003 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.004 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-36
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY 73
+ EVYEP +DSF LLA+ + VL EVG GSG V A G +
Sbjct: 2 NDEVYEPAEDSF-----LLAENAVDKKGDRVL--EVGTGSGIVAIVAAKN------GKKV 48
Query: 74 IATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE 130
+ DINPYAVE + + +N+ ++I +D+ DV++ NPPY+PT E
Sbjct: 49 VGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDK---FDVILFNPPYLPTEE 105
Query: 131 DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV--TLTANDPSQICLQMME 188
+E + + A +GG++GR VID+ L + L G + L+ +LT D ++ + +
Sbjct: 106 EEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGED--EVLEYLEK 163
Query: 189 KGYAARIVVQRSTEEENLHIIKFWR 213
G+ A +V + E L +++ +
Sbjct: 164 LGFEAEVVAEEKFPFEELIVLELVK 188
|
Length = 188 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-32
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 17/196 (8%)
Query: 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT 76
VYEP +DS L NL E P +E+G G+G V L G + T
Sbjct: 1 VYEPAEDSLLLEA-------NLRELKPDDVLEIGAGTGLVAIRLK------GKGKCILTT 47
Query: 77 DINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGRE 136
DINP+AV+ R+ + +NV D++ TD+ G+ + DV++ NPPY+P +D +
Sbjct: 48 DINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKF----DVILFNPPYLPLEDDLRRGD 103
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196
+ A GG++GR VID+ L ++L + G + L+ + N ++ E+G+ IV
Sbjct: 104 WLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163
Query: 197 VQRSTEEENLHIIKFW 212
+R E L IK W
Sbjct: 164 AERGLFFEELFAIKAW 179
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-29
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
V P D+ LV+A LA + +++G GSG +A+ L +E P + I
Sbjct: 87 EGVLIPRPDTELLVEAALAL----LLQLDKRILDLGTGSGA----IAIALAKEGPDAEVI 138
Query: 75 ATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV 133
A DI+P A+ + R+ E + + ++ +D+ L + D++V NPPY+P + E+
Sbjct: 139 AVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGK----FDLIVSNPPYIPAEDPEL 194
Query: 134 GREGI----ASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
E + A GG +G V +IL A +L G L L
Sbjct: 195 LPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236
|
Length = 280 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-22
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
P VY P +D+ L DAL A+ L VL ++ GSG + + A V
Sbjct: 13 PGVYRPQEDTQLLADALAAE--GLGPGRRVL--DLCTGSGALAVAAAAAGAGSV-----T 63
Query: 75 ATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVG 134
A DI+ AV R V D+ D A +E R DV+V NPPYVP P D
Sbjct: 64 AVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRP---FDVVVSNPPYVPAPPDAPP 120
Query: 135 REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194
G A AW G +GRAV+D++ +A LL+ G L LV + + ++ E G A
Sbjct: 121 SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180
Query: 195 IVVQRS 200
+V +
Sbjct: 181 VVASQW 186
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Length = 223 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-18
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI 74
P V P ++ LV+A L ++ P+ +++G GSG ++AL L +E P +
Sbjct: 64 PGVLIPRPETEELVEAALE----RLKKGPLRVLDLGTGSG----AIALALAKERPDARVT 115
Query: 75 ATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-DE 132
A DI+P A+ V RK + + + +D L G D++V NPPY+P +
Sbjct: 116 AVDISPEALAVARKNAARLGLDNVEFLQSDWFEPLPG---GKFDLIVSNPPYIPEADIHL 172
Query: 133 VGREGI----ASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
+ E A GGE+G +I+ A +LL GWL L
Sbjct: 173 LDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-17
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ L + + L E VL ++G GSG ++AL L +E P + A DI+P A+ V
Sbjct: 96 LVEWAL-EALLLKEPLRVL--DLGTGSG----AIALALAKERPDAEVTAVDISPEALAVA 148
Query: 87 RKTLEAHN-VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-DEVGREGI----AS 140
R+ + + + D L G D++V NPPY+P + + E
Sbjct: 149 RRNAKHGLGARVEFLQGDWFEPLPG---GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHL 205
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A GGE+G +I+ A + L GWL L
Sbjct: 206 ALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236
|
Length = 275 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 34/165 (20%)
Query: 13 SHPEVYEPCDDSFALVD---ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP 69
+ P V+ S +D LL + VL ++GCG G L L + P
Sbjct: 6 TLPGVF-----SHGRLDIGSRLLLSHLPKPLGGKVL--DLGCGYGV----LGAALAKRSP 54
Query: 70 GVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPT 128
++ DIN A+E R L A+ + ++ +D+ S +E G D+++ NPP+
Sbjct: 55 DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE---PGKFDLIISNPPFH-- 109
Query: 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173
AG V + + A + L G L++V
Sbjct: 110 --------------AGKATDYDVAQRFIAGAARHLKPGGELWIVA 140
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-12
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLI 100
++ G GSG + + A P + + +++P A + R+ L + ++
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAG----PDARVVGVELDPEAAALARRRLALAGLAPRVRVV 56
Query: 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160
D LE G D+++ NPPY P D ++ R + D+ L +A
Sbjct: 57 VGDARELLELP-DGSFDLVLGNPPYGPRAGDP-------------KDNRDLYDRFLAAAL 102
Query: 161 KLLSKRGWLYLVT 173
+LL G L ++T
Sbjct: 103 RLLKPGGVLVVIT 115
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This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 13 SHPEVYEPCDDSFALVDA---LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP 69
+ P V+ S +D LL + + VL ++GCG G L L+L ++ P
Sbjct: 133 TLPGVF-----SRDKLDKGSRLLLETLPPDLGGKVL--DLGCGYGV----LGLVLAKKSP 181
Query: 70 GVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDVMVVNPPYVPT 128
+ D+N AVE RK L A+ V + ++ +E + D+++ NPP+
Sbjct: 182 QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF----DLIISNPPFH-- 235
Query: 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
AG ++ +I+ +A + L G L++V
Sbjct: 236 --------------AGKAVVHSLAQEIIAAAARHLKPGGELWIV 265
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Length = 300 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 26 ALVDALLADRINLVEHHPVL-CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
LV+ LA L+ +P+L +++G GSG + +LA E P + IA DI+P A+
Sbjct: 100 ELVEKALAS---LISQNPILHILDLGTGSGCIALALAY----EFPNAEVIAVDISPDALA 152
Query: 85 VTRKTLE----AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGRE 136
V + E H V I +++ L + +D++V NPPY+ + V R
Sbjct: 153 VAEENAEKNQLEHRVE--FIQSNLFEPLAGQ---KIDIIVSNPPYIDEEDLADLPNVVRF 207
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A GG++G ++ +I+ A L G+L
Sbjct: 208 EPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 9e-09
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query: 31 LLADRI-NLVEHHPV-----LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
L+ D +E PV LC GSG +A+ P + A DI+P A+
Sbjct: 120 LIEDGFAPWLEDPPVTRILDLC----TGSG----CIAIACAYAFPDAEVDAVDISPDALA 171
Query: 85 VTRKTLEAHNVHAD--LINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREG 137
V +E H + LI +D+ + L R D++V NPPYV + E E
Sbjct: 172 VAEINIERHGLEDRVTLIESDLFAALPGR---RYDLIVSNPPYVDAEDMADLPAEYRHEP 228
Query: 138 IASAWAGGENGRAVIDKILPSADKLLSKRGWL 169
A A G++G ++ +IL A L++ G L
Sbjct: 229 -ELALAAGDDGLDLVRRILAEAPDYLTEDGVL 259
|
Length = 307 |
| >gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHP--VLCMEVGCGSGYVITSLALMLGQEV 68
++ P V+ P + LVD A L ++ +++ CGSG ++ L +
Sbjct: 57 IAVDPGVFVPRRRTEFLVDEAAA----LARPRSGTLVVVDLCCGSG----AVGAALAAAL 108
Query: 69 PGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126
G++ A DI+P AV R+ L VH D+ L L G VD++ N PYV
Sbjct: 109 DGIELHAADIDPAAVRCARRNLADAGGTVHEG----DLYDALPTALRGRVDILAANAPYV 164
Query: 127 PTPEDEVG 134
PT D +
Sbjct: 165 PT--DAIA 170
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-08
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 50/179 (27%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
HP LC+E VGCGSG +++ AL LG + + DI+P AVE
Sbjct: 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSG-ILSIAALKLGAA----KVVGIDIDPLAVE 196
Query: 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
RK E + V LE+ + G DV+V N A
Sbjct: 197 SARKNAELNQVS--DRLQVKLIYLEQPIEGKADVIVAN------------------ILAE 236
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203
VI ++ P +L+ GWL L + +C E+G+ +V R EE
Sbjct: 237 ------VIKELYPQFSRLVKPGGWLILSGILETQAQSVC-DAYEQGFT--VVEIRQREE 286
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK-TLEAHNVHADLINTDIAS 106
++GCG+G + +LA PG + DI+P A+E+ RK + +++ D
Sbjct: 4 DLGCGTGALALALA-----SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166
+ DV++ +PP ED + + L A +LL
Sbjct: 59 LPPEADES-FDVIISDPPLHHLVED--------------------LARFLEEARRLLKPG 97
Query: 167 GWLYLVTLTA 176
G L L + A
Sbjct: 98 GVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 31 LLADRI-NLVEHHPVL-CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
L+ D +E PV +++ GSG +A+ P + A DI+P A+ V
Sbjct: 108 LIEDGFAPWLEPEPVKRILDLCTGSG----CIAIACAYAFPEAEVDAVDISPDALAVAEI 163
Query: 89 TLEAHNV--HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASA 141
+E H + LI +D+ + L R D++V NPPYV + E E A
Sbjct: 164 NIERHGLEDRVTLIQSDLFAALPGRK---YDLIVSNPPYVDAEDMADLPAEYHHEP-ELA 219
Query: 142 WAGGENGRAVIDKILPSADKLLSKRGWL 169
A GE+G ++ +IL A L++ G L
Sbjct: 220 LASGEDGLDLVRRILAEAADHLNENGVL 247
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDI 104
+E+G GSG + SL E+P IATDI+ A+EV + + V +I+++
Sbjct: 143 LELGTGSGCIAISLLC----ELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW 198
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPE 130
+EK+ D +V NPPY+ E
Sbjct: 199 FENIEKQ---KFDFIVSNPPYISHSE 221
|
Length = 506 |
| >gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++VGCG+G L+ +L + P ++ +D++ A+E +R TL A+ + ++ +++ S
Sbjct: 201 LDVGCGAGV----LSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS 256
Query: 107 GLEKRLAGLVDVMVVNPPY 125
++ R D+++ NPP+
Sbjct: 257 DIKGRF----DMIISNPPF 271
|
Length = 342 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
DA LLA + +++G G+G +L L+L Q + + +I A E+
Sbjct: 31 TDAILLAAFAPVP--KKGRILDLGAGNG----ALGLLLAQRTEKAKIVGVEIQEEAAEMA 84
Query: 87 RKTLE----AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAW 142
++ + + +I DI L+ + D+++ NPPY A A
Sbjct: 85 QRNVALNPLEERIQ--VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIA- 141
Query: 143 AGGENGRAVI----DKILPSADKLLSKRGWLYLV 172
R I + ++ +A KLL G L V
Sbjct: 142 ------RHEITLDLEDLIRAAAKLLKPGGRLAFV 169
|
Length = 248 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----HNVHADLINT 102
+++GCG+G L L + +PG++Y DI+P A+E + L A V L
Sbjct: 1 LDIGCGTGT----LLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVL 56
Query: 103 DIASGLEKRLAGLVDVMVVN 122
D DV+V +
Sbjct: 57 DAIDLDPGS----FDVVVAS 72
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 33/100 (33%)
Query: 41 HHP--VLCME--------------VGCGSGYVITS-LALMLG-QEVPGVQYIATDINPYA 82
HP LC+E VGCGSG I + A LG ++V +A DI+P A
Sbjct: 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSG--ILAIAAAKLGAKKV-----LAVDIDPQA 154
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
VE R+ E + V +N + G K DV+V N
Sbjct: 155 VEAARENAELNGVE---LNVYLPQGDLK-----ADVIVAN 186
|
Length = 250 |
| >gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-05
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV 68
R + +P V P ++ LV+A+LA L E+ V ++G GSG V ++AL E
Sbjct: 223 RRFAVNPNVLIPRPETEHLVEAVLA---RLPENGRV--WDLGTGSGAVAVTVAL----ER 273
Query: 69 PGVQYIATDINPYAVEVTRKT-----LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123
P A+DI+P A+E RK H +TD+ S G D++V NP
Sbjct: 274 PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS------EGKWDIIVSNP 327
Query: 124 PYV 126
PY+
Sbjct: 328 PYI 330
|
Length = 423 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLA-LMLGQEVPGVQYIATDINPYAV 83
HP LC+E VGCGSG I ++A LG + + + DI+P AV
Sbjct: 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSG--ILAIAAAKLGAK----KVVGVDIDPQAV 198
Query: 84 EVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
E R+ + V L+ LE G DV+V N
Sbjct: 199 EAARENARLNGVE-LLVQAKGFLLLEVPENGPFDVIVAN 236
|
Length = 300 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+++GCG+G V+ L + P DI+ A+E+ ++ L + D
Sbjct: 2 LDLGCGTGRVL----RALARAGP-SSVTGVDISKEALELAKERLRDKGPKVRFVVADA 54
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHADLINTD 103
+++GCG+GY+ LA LG PG + + DI+ A+E ++ + NV I D
Sbjct: 8 LDLGCGTGYLTFILAEKLG---PGAEVVGIDISEEAIEKAKENAKKLGYENVE--FIQGD 62
Query: 104 IASGLEKRLAGL-VDVMVVNPP 124
I + +L DV++ N
Sbjct: 63 IEELPQLQLEDNSFDVVISNEV 84
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 67 EVPGV-QYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPP 124
E+ GV + A DINP AVE + +E ++V + ++ N D A+ L R V+ ++P
Sbjct: 65 EIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN-RKFHVIDIDPF 123
Query: 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184
P P + SA + ++RG L+ +TA D S +C
Sbjct: 124 GTPAP-------------------------FVDSAIQASAERG---LLLVTATDTSALCG 155
Query: 185 QMMEKG---YAARIVVQRSTEEENLHII 209
+ Y A V S E L ++
Sbjct: 156 NYPKSCLRKYGANPVKTESCHESALRLL 183
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 29/100 (29%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLA-LMLG-QEVPGVQYIATDINPYA 82
HP LC+E VGCGSG I ++A L LG ++V + DI+P A
Sbjct: 143 THPTTALCLEALESLVKPGETVLDVGCGSG--ILAIAALKLGAKKV-----VGVDIDPVA 195
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
V ++ E + V A L E G DV+V N
Sbjct: 196 VRAAKENAELNGVEAQLEVYLPGDLPE----GKADVVVAN 231
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIAS 106
++GCG+G SLA+ L + PG + D++P +E+ R+ + + D
Sbjct: 7 DIGCGTG----SLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 107 GLE 109
L+
Sbjct: 63 ALD 65
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89
A + + L VL E+G GSGY LA ++G+ V + + E R+
Sbjct: 62 ARMLQLLELKPGDRVL--EIGTGSGYQAAVLARLVGRVV------SIERIEELAEQARRN 113
Query: 90 LE---AHNVHADLINTDIASGLEKRLAGLVDVMVVN--PPYVPTP 129
LE NV + + D + G + D ++V P VP
Sbjct: 114 LETLGYENVT--VRHGDGSKGWPEE--APYDRIIVTAAAPEVPEA 154
|
Length = 209 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAV 83
++ L A L + VL ++G G+G + AL+ V V DI+P A+
Sbjct: 32 AYILWVAYLRGDLEGKT---VL--DLGAGTGILAIGAALLGASRVLAV-----DIDPEAL 81
Query: 84 EVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125
E+ R E + + D+ G D +++NPP+
Sbjct: 82 EIARANAEELLGDVEFVVADV-----SDFRGKFDTVIMNPPF 118
|
Length = 198 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.96 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.95 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.95 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.95 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.94 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.94 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.93 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.92 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.92 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.91 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.91 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.91 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.9 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.89 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.83 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.82 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.81 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.8 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.79 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.79 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.77 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.77 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.76 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.75 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.75 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.73 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.73 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.72 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.72 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.71 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.7 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.7 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.69 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.69 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.69 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.69 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.69 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.69 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.68 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.67 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.67 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.66 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.66 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.66 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.66 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.66 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.65 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.65 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.65 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.65 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.65 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.64 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.63 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.63 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.63 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.63 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.62 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.62 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.61 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.61 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.61 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.61 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.6 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.59 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.59 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.59 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.58 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.58 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.57 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.57 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.56 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.56 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.56 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.55 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.55 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.55 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.55 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.55 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.54 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.54 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.53 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.53 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.52 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.52 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.52 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.52 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.51 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.51 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.51 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.48 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.48 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.48 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.48 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.48 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.47 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.47 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.47 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.47 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.47 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.46 | |
| PLN02476 | 278 | O-methyltransferase | 99.45 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.45 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.45 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.44 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.44 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.44 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.44 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.44 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.44 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.43 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.43 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.42 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.42 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.42 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.42 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.41 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.41 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 99.4 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.4 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.39 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.39 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.38 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.38 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.38 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.37 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.36 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.36 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.35 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.35 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.35 | |
| PLN02366 | 308 | spermidine synthase | 99.34 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.34 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.33 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.33 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.32 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.31 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.31 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.3 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.3 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 99.3 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.28 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.28 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.27 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.26 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.25 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 99.24 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.21 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.21 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.2 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.19 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.19 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.16 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.16 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.14 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.14 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.13 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.09 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 99.06 | |
| PLN02823 | 336 | spermine synthase | 99.05 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.03 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.02 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.02 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 99.01 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.0 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.99 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.98 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.97 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.94 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.92 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.92 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.92 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.91 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.91 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.9 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.87 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.86 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.84 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.84 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.82 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.82 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.82 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.8 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.78 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.77 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.76 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.74 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.72 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.7 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.69 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.69 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.67 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.65 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.64 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.64 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.63 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.61 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.58 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.53 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 98.52 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.51 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.51 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.42 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 98.39 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.37 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.35 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.35 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.34 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.32 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.28 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.24 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.23 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.22 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.22 | |
| PRK13699 | 227 | putative methylase; Provisional | 98.22 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.21 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.2 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.2 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.18 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.16 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.98 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.98 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.98 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.95 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.94 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.93 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.91 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.89 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.86 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.86 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.83 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.79 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.77 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.72 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.66 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.65 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.64 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.61 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.56 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.5 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.5 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.35 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.31 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.3 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.3 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.28 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.27 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 97.19 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.16 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 97.13 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.09 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 97.08 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.07 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.05 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.04 | |
| PHA01634 | 156 | hypothetical protein | 97.04 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.83 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.8 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.8 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.77 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.76 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 96.73 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.72 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.65 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.65 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.64 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.56 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.43 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.05 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.03 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.95 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.92 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 95.87 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.85 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.65 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 95.63 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.54 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.49 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.41 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.35 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.27 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.08 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.94 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.46 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.36 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.27 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 94.05 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 93.76 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.52 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 93.46 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 93.43 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 93.42 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.41 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.34 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.28 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 93.23 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.2 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 93.13 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 93.11 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 93.03 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 92.9 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 92.54 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.32 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 91.78 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.77 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 91.68 | |
| PLN02494 | 477 | adenosylhomocysteinase | 91.42 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.42 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.35 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 91.34 | |
| PRK08643 | 256 | acetoin reductase; Validated | 91.25 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.24 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 91.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.01 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.94 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.68 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 90.53 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 90.47 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.42 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.34 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.33 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.2 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 90.19 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.01 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.94 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.91 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 89.83 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 89.64 | |
| PF05063 | 176 | MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen | 89.64 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 89.51 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 89.34 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.25 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 89.16 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.09 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 89.08 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 89.03 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 88.79 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 88.61 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 88.56 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.55 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.47 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 88.44 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 88.43 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 88.24 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 88.23 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.07 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.04 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 88.01 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.9 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.87 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.7 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 87.66 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.55 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 87.55 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 87.49 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 87.48 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.46 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.43 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.24 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 87.22 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 87.2 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 87.13 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.12 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 87.0 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 86.56 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 86.47 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.44 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 86.21 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.12 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.11 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.07 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.89 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 85.84 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.69 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 85.47 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 85.36 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 85.35 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 85.18 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 85.17 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 85.13 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.04 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.03 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 85.01 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.38 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 84.35 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.33 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.29 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 84.12 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 84.05 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.78 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 83.75 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.63 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 83.29 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 83.16 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 83.14 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 83.04 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 82.99 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 82.95 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.9 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 82.65 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.53 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 82.5 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 82.49 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 82.42 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 82.39 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 82.19 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 82.11 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 82.06 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 82.02 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 82.01 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 81.82 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 81.55 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 81.54 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 81.54 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 81.53 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 81.36 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 81.34 | |
| COG1743 | 875 | Adenine-specific DNA methylase containing a Zn-rib | 81.26 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 81.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 80.95 | |
| PRK05717 | 255 | oxidoreductase; Validated | 80.87 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 80.56 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.51 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 80.43 | |
| PF08468 | 155 | MTS_N: Methyltransferase small domain N-terminal; | 80.35 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 80.07 |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=198.83 Aligned_cols=188 Identities=27% Similarity=0.383 Sum_probs=154.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|.||++|+.+++.++..... ... +|||+|||||++++.++.. .|.+.|+|+|+|+.+++.|++|
T Consensus 82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 82 RFKVDEGVLIPRPDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eeeeCCCceecCCchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998744432 122 8999999999999988887 7788999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++.. .++.+|+++... ++||+|++||||.+... ++....++..++++|.+|...+..++..+.+.|+
T Consensus 154 a~~~~l~~~~~~~~dlf~~~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 154 AERNGLVRVLVVQSDLFEPLR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHcCCccEEEEeeecccccC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 99999743 555557766543 48999999999999872 2345678888999888999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcC-CcEEEEEecCCCCccEEEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKG-YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~l~~ 210 (256)
|||.+++ ..+.++.+.+.+.+.+.+ |............+++....
T Consensus 230 ~~g~l~l-e~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 230 PGGVLIL-EIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred CCcEEEE-EECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 9999888 567788899999999999 55566666666665554443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=177.62 Aligned_cols=194 Identities=52% Similarity=0.891 Sum_probs=179.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
..++|.|..|++.|.|.+.....++.+..+..++|+|||+|.++-.+++.+. |++...++|+||.+.+...+.+..|
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhc
Confidence 4499999999999999998888777666789999999999999988888764 7889999999999999999999999
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...++++.|+.+.+.. ++.|+++.||||.+.+..+....+...+|.||.+|+.+.+.++.++-.+|.|.|.++++.
T Consensus 92 ~~~~~~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 92 RVHIDVVRTDLLSGLRN---ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCccceeehhHHhhhcc---CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 98889999999988765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 174 LTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+...++.+.++..||.....+.+....++..++++.+
T Consensus 169 ~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 169 LRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred hhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 9888899999999999999999999999999999998876
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=199.90 Aligned_cols=189 Identities=23% Similarity=0.280 Sum_probs=160.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.|++|.||++++.+++.+++.+. ++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH
Confidence 67899999999999999999988753 4579999999999999888776 67889999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..++...+++++|+.+...+ ..++||+|++||||....+. +....++..++.++.+|...+..++..+.+.|+||
T Consensus 296 ~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 296 ADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred HHcCCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 98887668999998764221 13579999999999876542 22356888899999999999999999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEE
Q 025180 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 210 (256)
|.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.+..
T Consensus 375 G~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 375 GFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred cEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 99887 45677888999999999998888888888888876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=206.66 Aligned_cols=195 Identities=23% Similarity=0.296 Sum_probs=163.0
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhccc------------------c---cCCCCEEEEecccccHHHHHHHHHhcccC
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINL------------------V---EHHPVLCMEVGCGSGYVITSLALMLGQEV 68 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~------------------~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~ 68 (256)
.|.+.|+|++||++|+.+++++++.+... . ..++.+|||+|||+|++++.++.. .
T Consensus 85 ~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~----~ 160 (506)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE----L 160 (506)
T ss_pred EEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH----C
Confidence 37799999999999999999998765310 0 113578999999999999888876 5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhh
Q 025180 69 PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASA 141 (256)
Q Consensus 69 ~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~ 141 (256)
|+++|+|+|+|+.+++.|++|+..+++.. .++++|+.+... .++||+|++||||...... ++...++..+
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~A 237 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIA 237 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHH
Confidence 77899999999999999999999888743 788999866432 3589999999999987653 3456788999
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025180 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
+.++.+|+..+..++..+.++|+|||.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.++...
T Consensus 238 L~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 238 LFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI 307 (506)
T ss_pred hcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence 999999999999999999999999999988 4667788899999999999888888888888887766544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=186.46 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=155.8
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+--.+++|.++.|+.+|+.++... ..++|||+|||+|.+++.+++. .+++.|+|||+++++++.|++|+
T Consensus 20 I~q~~~~~~~~~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r----~~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 20 IIQDRCGFRYGTDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQR----TEKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred EEeCCCccccccHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhcc----CCCCcEEEEEeCHHHHHHHHHHH
Confidence 334677999999999988876554 3799999999999987776665 66789999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+.|++.. ++++.|+.+........+||+|+|||||+.........+....+.+.... .++++++.+..+|||||.
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~---~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITL---DLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcC---CHHHHHHHHHHHccCCCE
Confidence 9999876 99999999988766566899999999999887762222222222222111 278999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcE---EEEEecCCCCccEEEEEEEecCcccc
Q 025180 169 LYLVTLTANDPSQICLQMMEKGYAA---RIVVQRSTEEENLHIIKFWRDFDIQM 219 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (256)
++++.+..+ ..++...+.+++|.. ..++++.....+..+++++++++...
T Consensus 166 l~~V~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l 218 (248)
T COG4123 166 LAFVHRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGKSGL 218 (248)
T ss_pred EEEEecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCCCCc
Confidence 999887554 678899999988875 45778889999999999999988544
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=185.85 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=156.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.++++.||++++.+++.+++.+.. ..+..+|||+|||+|.+++.++.. .++++|+|+|+|+++++.|++|
T Consensus 84 ~f~v~~~vliPr~ete~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 84 EFFVNEHVLIPRPETEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EEEECCCCcCCCCccHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 4778999999999999999998876531 123379999999999999988887 6678999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. .+++++|+.+... ..+||+|++||||...... ++...++..++.+|.+|...+..++..+.++|
T Consensus 158 ~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHcCCCCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9998875 4899999876532 2479999999999977542 34457888899999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEEEEecCCCCccEEEE
Q 025180 164 SKRGWLYLVTLTANDPSQICLQMM-EKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
+|||++++. .+..+...+.+++. ..+|....+.....+.+++.+.
T Consensus 235 ~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 235 KPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred cCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 999999884 45666778888887 4688777777777777776653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-25 Score=182.16 Aligned_cols=179 Identities=27% Similarity=0.405 Sum_probs=147.1
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|.|+.+++.+++.++..+... ..+.+|||+|||+|.+++.++.. .++.+++|+|+|+.+++.|++|
T Consensus 56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 56 RIAVDPGVFVPRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred EEEECCCCcCCCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 36788999999999999999988765321 23468999999999999888876 5667999999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++. +++++|+.+.......++||+|++||||..... +++...++..++.+|.++.+.+..++..+.++|+
T Consensus 130 ~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~ 207 (251)
T TIGR03704 130 LADAGG--TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA 207 (251)
T ss_pred HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 988763 788899877543322467999999999987543 3445677788899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|||++++... ..+..++...+.+.||......
T Consensus 208 ~gG~l~l~~~-~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 208 PGGHLLVETS-ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred CCCEEEEEEC-cchHHHHHHHHHHCCCCceeeE
Confidence 9999999655 5567889999999999866554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=168.46 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=146.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|.|+.++.++.+.+... ++.+|||+|||+|.+++.++.. ++ +++++|+++.+++.+++|+..++..
T Consensus 1 ~~~~~~d~~~l~~~l~~~-------~~~~vLdlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLREL-------KPDDVLEIGAGTGLVAIRLKGK----GK--CILTTDINPFAVKELRENAKLNNVG 67 (179)
T ss_pred CCCCCccHHHHHHHHHhc-------CCCeEEEeCCChhHHHHHHHhc----CC--EEEEEECCHHHHHHHHHHHHHcCCc
Confidence 589999997777665332 5678999999999998877765 33 8999999999999999999988876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+++.+|+.+.. .++||+|++||||++.+.......+...++.++..+...+..++.++.++|+|||+++++....
T Consensus 68 ~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 68 LDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred eEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 688889976642 3589999999999887665433344455666676677778999999999999999999988877
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025180 177 NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
....++...+.+.||..+.+.......+..+.+++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 77889999999999999999888888888777764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=172.24 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=152.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
....|+|++||++|+.+++++.+.+....-.++..|||+|||+|++++.++..| |+++|+|+|.|+.++..|.+|+
T Consensus 117 l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L----~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 117 LVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL----PQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred EEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC----CCceEEEEeccHHHHHHHHHHH
Confidence 456799999999999999999998864322356689999999999998888774 5789999999999999999999
Q ss_pred HHcCCcc--eEEEc----chhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHH
Q 025180 91 EAHNVHA--DLINT----DIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 91 ~~~~~~~--~~~~~----d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++++.. .+++- |..... +...+++|++++||||....+ ++++..++..++.||..|.+++-.+..-+
T Consensus 193 qr~~l~g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 193 QRLKLSGRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred HHHhhcCceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 9998876 44433 333322 134589999999999998776 56788899999999999999999999999
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcC----CcEEEEEecCCCCccEEEEE
Q 025180 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKG----YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~l~~ 210 (256)
.++|+|||.+.+..........+.+.+.... +....++....+.++++.+.
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~ 326 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIH 326 (328)
T ss_pred HhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEE
Confidence 9999999999997765555555555544332 23344566666666665543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=175.45 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=140.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.||++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 92 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 92 FYVDERVLIPRSPIAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred EEECCCCccCCCchHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH
Confidence 678999999999998888887653211 134679999999999999988887 67789999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. ..++++|+.+..+ .++||+|++||||....... ....++..++.++..|...+..++..+.++|+
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred HHcCCCCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 999875 3889999876532 35799999999998765421 12467788889999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++... .. ...+.+.+.+.+|.+
T Consensus 243 ~gG~l~~e~g-~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 243 ENGVLVVEVG-NS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCEEEEEEC-cC-HHHHHHHHHhCCCce
Confidence 9999998543 43 468888888888765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=173.35 Aligned_cols=188 Identities=25% Similarity=0.405 Sum_probs=151.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+...+++++|+++++.++++++.... ..++.+|||+|||+|.+++.++.. .+.+.++|+|+++.+++.+++|
T Consensus 79 ~~~~~~~~lipr~~te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 79 DFKVSPGVLIPRPETEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EEEECCCceeCCCCcHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 366788999999999999999885542 246789999999999999988887 5678999999999999999999
Q ss_pred HHHcCC-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 90 LEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..... ...++.+|+.+... .++||+|++||||..... .+....++..++.++..+...+..+++.+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 872222 34888999865432 468999999999987544 334457788888999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025180 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
+|||++++. .+......+...+.+.||..........+.+++.+
T Consensus 229 k~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 229 KPGGWLLLE-IGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred ccCCEEEEE-ECchHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 999999984 45666778899999999986666666666666544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=169.88 Aligned_cols=185 Identities=28% Similarity=0.421 Sum_probs=151.2
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+.++.|+++++.+++.+++.+. ..+.+|||+|||+|.+++.++.. .+++.++|+|+++.+++.++++
T Consensus 59 ~~~~~~~~~~p~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~~ 130 (251)
T TIGR03534 59 DFKVSPGVLIPRPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARKN 130 (251)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 456788899999999999999988764 34579999999999999888876 5678999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++.. +++++|+.+.. ..++||+|++||||...... +....++..++.++..+...+..+++.+.++|
T Consensus 131 ~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 131 AARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred HHHcCCCeEEEEECchhccC---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 99888764 89999987643 24789999999999875542 22334666777788888888889999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccE
Q 025180 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENL 206 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 206 (256)
+|||++++. .+.....++.+.+.+.||....+........++
T Consensus 208 ~~gG~~~~~-~~~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 208 KPGGWLLLE-IGYDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred ccCCEEEEE-ECccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 999999985 445667789999999999877776666555554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=173.79 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=138.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.||++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.+++.|++|+
T Consensus 104 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 104 FYVDERVLVPRSPIAELIEDGFAPWLE--DPPVTRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred EEECCCCcCCCCchHHHHHHHHHHHhc--cCCCCEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHH
Confidence 678999999999998888877653211 122379999999999999888876 67889999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. .+++++|+.+..+ .++||+|++||||....... ....++..++.++.+|...+..++..+.++|+
T Consensus 178 ~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~ 254 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT 254 (307)
T ss_pred HHhCCCCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC
Confidence 998874 4899999876542 35899999999998764421 12367788888999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++. .+.. ...+.+.+.+.++.+
T Consensus 255 pgG~l~~E-~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 255 EDGVLVVE-VGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCEEEEE-ECcC-HHHHHHHHhhCCCEE
Confidence 99999984 3344 456777787777655
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=163.63 Aligned_cols=179 Identities=31% Similarity=0.418 Sum_probs=143.2
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+...+++|.|..+++.+++.+...- ..++.+|||+|||+|.+++.+++. . ..+++++|+++.+++.+++
T Consensus 7 ~~~~~~~g~~~p~~ds~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 7 DALLRAPGVYRPQEDTQLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL 77 (223)
T ss_pred ceeecCCCCcCCCCcHHHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH
Confidence 347789999999999999888776532 146789999999999998877764 2 2489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++....++++|+.+.. .+++||+|++||||............+...|..+..+...+..+++.+.++||+||+
T Consensus 78 n~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 78 NALLAGVDVDVRRGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred HHHHhCCeeEEEECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 99988876788889987643 246899999999998776654444555666777777777888999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025180 169 LYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
++++........++.+.+.+.+|........
T Consensus 155 l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred EEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence 9998776666778888888888876554433
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=193.01 Aligned_cols=183 Identities=19% Similarity=0.292 Sum_probs=144.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|+||++|+.+++. +...+.. ..++.+|||+|||+|.+++.+++. ++.++|+|+|+|+.+++.|++|
T Consensus 88 ~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 88 TMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999 4432110 013579999999999999998887 6677999999999999999999
Q ss_pred HHHcCCc-----------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc-----ccccc---------c
Q 025180 90 LEAHNVH-----------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE-----VGREG---------I 138 (256)
Q Consensus 90 ~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~-----~~~~~---------~ 138 (256)
+..|+++ .+++++|+.+.... ...+||+||+||||...++.. +...+ +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 9987531 38899999876532 123699999999999877632 22222 3
Q ss_pred hhhhcC---CCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH-HHHHHcCCcEEEEEecC
Q 025180 139 ASAWAG---GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC-LQMMEKGYAARIVVQRS 200 (256)
Q Consensus 139 ~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~ 200 (256)
..++.+ +.+|+..+..++..+.++|+|||++++ ..+.++.+.+. +++++.||....++.+.
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 456655 588999999999999999999999998 56677788888 69999999887776543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=153.62 Aligned_cols=183 Identities=31% Similarity=0.532 Sum_probs=141.5
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
-+++|+|+.++..+++.+.. .++++|||+|||+|.++..++.. +.+++|+|+++++++.+++++..+
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~ 68 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLN 68 (188)
T ss_pred CCcccCcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHc
Confidence 46789999998888887654 26789999999999988777664 468999999999999999999888
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. ..++.+|+.+... +.+||+|++||||...........+....+..+..+...+..+++++.++|||||.++
T Consensus 69 ~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 69 NIRNNGVEVIRSDLFEPFR---GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCCCcceEEEecccccccc---ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 765 4778888766432 3489999999999875543322223344555566666678899999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025180 171 LVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
++.+.......+...+.+.||+...........+...++...
T Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 146 LLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred EEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 987776667889999999999877766665555555555443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=153.73 Aligned_cols=141 Identities=28% Similarity=0.519 Sum_probs=110.9
Q ss_pred eeccCCccccCC---chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPEVYEPCD---DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~---~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+-.+|++|.|.. .+++|++.+... +..+|||+|||+|.+++.+++. .+..+|+++|+++.+++.++
T Consensus 4 ~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 4 FITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHH
T ss_pred EEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHH
Confidence 557899998553 266777766665 5789999999999999888876 77888999999999999999
Q ss_pred HHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 88 KTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..+++. .+++..|+.+... +++||+|++|||+..- ...+......++..+.++||||
T Consensus 73 ~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP~~~~----------------~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 73 RNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPPFHAG----------------GDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp HHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---SBTT----------------SHCHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCcccccccccccccccc---ccceeEEEEccchhcc----------------cccchhhHHHHHHHHHHhccCC
Confidence 999999988 5899999877644 4799999999996432 2224567889999999999999
Q ss_pred eEEEEEEeCCCCHHH
Q 025180 167 GWLYLVTLTANDPSQ 181 (256)
Q Consensus 167 G~l~~~~~~~~~~~~ 181 (256)
|.++++.........
T Consensus 134 G~l~lv~~~~~~~~~ 148 (170)
T PF05175_consen 134 GRLFLVINSHLGYER 148 (170)
T ss_dssp EEEEEEEETTSCHHH
T ss_pred CEEEEEeecCCChHH
Confidence 999887765443333
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-19 Score=153.89 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=119.6
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+..+|+||..... ++++.+ .++ ...+.+|||+|||+|.+++.+++. +|+++|+++|+|+.+++.++
T Consensus 201 ~~~~~gVFs~~~LD~GtrllL~----~lp---~~~~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 201 IHNHANVFSRTGLDIGARFFMQ----HLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred EEecCCccCCCCcChHHHHHHH----hCC---cccCCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 6678999987632 555444 332 123579999999999999888877 78899999999999999999
Q ss_pred HHHHHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 88 KTLEAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 88 ~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+|+..|+.. .+++..|+.+.. .+++||+|+|||||+..... .......++..+.++|
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~---~~~~fDlIlsNPPfh~~~~~----------------~~~ia~~l~~~a~~~L 330 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHAL----------------TDNVAWEMFHHARRCL 330 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC---CCCCEEEEEECcCcccCccC----------------CHHHHHHHHHHHHHhc
Confidence 999988743 277888876543 23589999999999743211 1123568899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025180 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+|||.++++.... ......+++. |... .......++.++++.|..
T Consensus 331 kpGG~L~iV~nr~---l~y~~~L~~~-fg~~---~~va~~~kf~vl~a~k~~ 375 (378)
T PRK15001 331 KINGELYIVANRH---LDYFHKLKKI-FGNC---TTIATNNKFVVLKAVKLG 375 (378)
T ss_pred ccCCEEEEEEecC---cCHHHHHHHH-cCCc---eEEccCCCEEEEEEEeCC
Confidence 9999999986322 2233445443 2221 223556677888887743
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-19 Score=145.82 Aligned_cols=165 Identities=22% Similarity=0.358 Sum_probs=119.5
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|..+|++|.-... +++|++.+... .+.+|||+|||.|.+++.+++. +|+..++.+|+|..+++.++
T Consensus 131 ~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 131 FKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred EEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHH
Confidence 5678888876543 55555544333 4559999999999999998888 88999999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..|+.+. .+...|..+... ++||+|||||||+.--. ........++....+.|++|
T Consensus 200 ~Nl~~N~~~~~~v~~s~~~~~v~----~kfd~IisNPPfh~G~~----------------v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 200 KNLAANGVENTEVWASNLYEPVE----GKFDLIISNPPFHAGKA----------------VVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred HhHHHcCCCccEEEEeccccccc----ccccEEEeCCCccCCcc----------------hhHHHHHHHHHHHHHhhccC
Confidence 9999999988 788888777643 48999999999973221 11223458999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
|.+.++.... ......|.+. |....+..+ ...+.+++.+|
T Consensus 260 GeL~iVan~~---l~y~~~L~~~-Fg~v~~la~---~~gf~Vl~a~k 299 (300)
T COG2813 260 GELWIVANRH---LPYEKKLKEL-FGNVEVLAK---NGGFKVLRAKK 299 (300)
T ss_pred CEEEEEEcCC---CChHHHHHHh-cCCEEEEEe---CCCEEEEEEec
Confidence 9999987632 2345555544 332222222 23346666554
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=131.67 Aligned_cols=114 Identities=29% Similarity=0.453 Sum_probs=90.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
|.+|||+|||+|.+++.+++. + ..+++|+|+++.+++.++.++..+++. .+++++|+.+.......++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999888887 4 469999999999999999999998874 399999998886555678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+||||.......... ......+++.+.++|+|||+++++.+
T Consensus 76 ~npP~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAAL-------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----G-------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhh-------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653322110 11367889999999999999999875
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-18 Score=146.17 Aligned_cols=136 Identities=25% Similarity=0.425 Sum_probs=105.3
Q ss_pred eeccCCccccCC-c--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPEVYEPCD-D--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~-~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...|++|.... | +..+.+.+.. ....+|||+|||+|.+++.+++. +|+..++++|+++.+++.++
T Consensus 169 i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 169 VKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 556788776643 3 4555554432 23468999999999998888776 77889999999999999999
Q ss_pred HHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 88 KTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+++..+++..+++..|+.+.. .++||+|++||||+..... .......++..+.++|||||
T Consensus 238 ~nl~~n~l~~~~~~~D~~~~~----~~~fDlIvsNPPFH~g~~~----------------~~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 238 ATLAANGLEGEVFASNVFSDI----KGRFDMIISNPPFHDGIQT----------------SLDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred HHHHHcCCCCEEEEccccccc----CCCccEEEECCCccCCccc----------------cHHHHHHHHHHHHHhcCcCC
Confidence 999999887788888876532 4689999999999742211 12346889999999999999
Q ss_pred EEEEEEeCCC
Q 025180 168 WLYLVTLTAN 177 (256)
Q Consensus 168 ~l~~~~~~~~ 177 (256)
.++++....-
T Consensus 298 ~L~iVan~~l 307 (342)
T PRK09489 298 ELRIVANAFL 307 (342)
T ss_pred EEEEEEeCCC
Confidence 9999876543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=141.83 Aligned_cols=197 Identities=13% Similarity=0.206 Sum_probs=131.7
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhc-----ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025180 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRI-----NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~-----~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~ 78 (256)
.|++...++.++.++|.-. +.-++.++.+.+. .++.+++.+|||||||+|++...++.. .+++.++|+|+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~~~~~~atDI 146 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EYGWRFVGSDI 146 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh----CCCCEEEEEeC
Confidence 4555544688888888876 6666677766653 233456799999999999875544443 56899999999
Q ss_pred CHHHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCccccc---c-------cc----
Q 025180 79 NPYAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGR---E-------GI---- 138 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~---~-------~~---- 138 (256)
++.+++.|++|+..| ++.. .+.. .|..+..... ..+.||+|+|||||+......... + ..
T Consensus 147 d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 147 DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 999999999999999 6765 4433 3333322211 246899999999999876642110 0 00
Q ss_pred ------hhh-h-cCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE-EecCCCCccEE
Q 025180 139 ------ASA-W-AGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV-VQRSTEEENLH 207 (256)
Q Consensus 139 ------~~~-~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~ 207 (256)
... | .||+ ..+...++++...+++..|++..+.........+.+.+++.|.....+ .-.++...++.
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~ 302 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRF 302 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEE
Confidence 011 1 2333 235667788888888888887776666777888999999888854433 33334433333
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=132.96 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=111.7
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
.+|.+..+.+-+.+.+.+......++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.++++++.++++.
T Consensus 18 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~ 93 (181)
T TIGR00138 18 TSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREVKAELGLNN 93 (181)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC
Confidence 3444433444444444332222235899999999999999888765 667899999999999999999999888754
Q ss_pred -eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 98 -DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 -~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+++++|+.+.. ..++||+|+++. +. .+..+++.+.++|+|||++++... .
T Consensus 94 i~~i~~d~~~~~---~~~~fD~I~s~~-~~------------------------~~~~~~~~~~~~LkpgG~lvi~~~-~ 144 (181)
T TIGR00138 94 VEIVNGRAEDFQ---HEEQFDVITSRA-LA------------------------SLNVLLELTLNLLKVGGYFLAYKG-K 144 (181)
T ss_pred eEEEecchhhcc---ccCCccEEEehh-hh------------------------CHHHHHHHHHHhcCCCCEEEEEcC-C
Confidence 89999998752 247899999974 11 146778888999999999998653 4
Q ss_pred CCHHHHHHHHHH---cCCcEEEEEecCCCCccEEE
Q 025180 177 NDPSQICLQMME---KGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 177 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~l 208 (256)
....++....+. .|++.+...+...+..++++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 179 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGPDRHLVI 179 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEeeccccCCCceEEEE
Confidence 445555555444 57777666666555444444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=137.62 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=115.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
|.++++++-.+. +++.+|||+|||||.+++++++. +. ..++|+|++|.+++.+++|+.+|++.. ....
T Consensus 149 T~lcL~~Le~~~-----~~g~~vlDvGcGSGILaIAa~kL----GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~ 218 (300)
T COG2264 149 TSLCLEALEKLL-----KKGKTVLDVGCGSGILAIAAAKL----GA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKG 218 (300)
T ss_pred HHHHHHHHHHhh-----cCCCEEEEecCChhHHHHHHHHc----CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhccc
Confidence 788888888875 48999999999999999998887 22 379999999999999999999999874 3333
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+..... ..++||+|++|-- -..+..+...+.+.|||||+++++-.-.+..+.
T Consensus 219 ~~~~~~~---~~~~~DvIVANIL------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~ 271 (300)
T COG2264 219 FLLLEVP---ENGPFDVIVANIL------------------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAES 271 (300)
T ss_pred ccchhhc---ccCcccEEEehhh------------------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHH
Confidence 3332221 2368999999841 134668888999999999999998776667778
Q ss_pred HHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+...+.+.||.+..+..+ +.++.+.++|
T Consensus 272 V~~a~~~~gf~v~~~~~~----~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER----EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec----CCEEEEEEEc
Confidence 889998999997766655 3334444443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-17 Score=128.00 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..++++. +++++|+.+... .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEE
Confidence 4799999999999998888876 678899999999999999999999998864 899999887532 56899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE---
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV--- 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 197 (256)
++. + .....+++.+.++|+|||+++++.. ......+....+..|+....++
T Consensus 118 ~~~-~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 118 SRA-V------------------------ASLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred Ecc-c------------------------cCHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEEe
Confidence 962 0 0157889999999999999999764 4456677778888898754433
Q ss_pred -ecCCCCccEEEE
Q 025180 198 -QRSTEEENLHII 209 (256)
Q Consensus 198 -~~~~~~~~~~l~ 209 (256)
+...++.++.++
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK00107 172 LPGLDGERHLVII 184 (187)
T ss_pred cCCCCCcEEEEEE
Confidence 333445555444
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=141.18 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=114.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.+.|.+-...++..+++... .+++.+|||+|||+|.++++++.. +..++|+|+++.|++.++.|+...++.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34454445556666655432 257889999999999998887654 468999999999999999999988877
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. .+.++|+.+.. ..+++||+|++||||....... +......+..++..+.+.|+|||+++++.+.
T Consensus 231 ~i~~~~~D~~~l~--~~~~~~D~Iv~dPPyg~~~~~~------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 231 DFFVKRGDATKLP--LSSESVDAIATDPPYGRSTTAA------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCeEEecchhcCC--cccCCCCEEEECCCCcCccccc------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 6 88899988753 2357899999999997543211 1111234688999999999999999998765
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEe
Q 025180 176 ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.. ++...++..|| +...+.
T Consensus 297 ~~---~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 297 RI---DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred CC---CHHHHHhhcCc-chheee
Confidence 43 45567888899 544443
|
This family is found exclusively in the Archaea. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=135.11 Aligned_cols=121 Identities=19% Similarity=0.256 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+|.+|||+|||||.+++.+++.. +.+.|+|+|+|+.|++.+++.....+.. .+++++|+.+. ++.+++||++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~----g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L--Pf~D~sFD~v 123 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSV----GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL--PFPDNSFDAV 123 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhc----CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC--CCCCCccCEE
Confidence 378999999999999998888874 4679999999999999999999876655 48999999887 5778999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..-+.+.++ .+.+|+++.|+|||||++++..........+...+..
T Consensus 124 t~~fglrnv~d---------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 124 TISFGLRNVTD---------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred EeeehhhcCCC---------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 99765544443 6899999999999999999877655444344444433
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=135.25 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.+++.++.. .++.+|+|+|+++.+++.++++.. ..+++++|+.+... ..+||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc---cCCCcEEE
Confidence 35679999999999988777665 445699999999999999988742 34889999987642 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHH--HHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAV--IDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~ 192 (256)
+||||++.+..+. ....++.+|..+.+. +..++.....+|+|+|.++++..+.. ..++..+++++.||.
T Consensus 132 sNPPF~~l~~~d~---~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDT---KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EcCCccccCchhh---hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 9999998654332 122455566666665 47899999999999999888654322 456889999999876
Q ss_pred E
Q 025180 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 209 ~ 209 (279)
T PHA03411 209 T 209 (279)
T ss_pred e
Confidence 4
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=119.86 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=84.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
|+.+|||+|||+|.+++.+++. .++++|+|+|+++++++.|++++...+.. .+++++|+ ..... ..+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEE
Confidence 5789999999999999999885 57889999999999999999999665543 38999999 32222 24679999
Q ss_pred EECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 120 VVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++. ...... .......+++.+.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLL------------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCC------------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccccc------------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9975 111000 11235788999999999999999864
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-16 Score=128.25 Aligned_cols=136 Identities=14% Similarity=0.182 Sum_probs=104.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.+ .+++.|+|+|+++.+++.+++++...+.+. +++.+|+.+.. +.+++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAV---GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCCccEE
Confidence 567899999999999988887763 356799999999999999999988776654 88889987652 335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------------- 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------- 177 (256)
+++..+.+.++ ...+++++.++|+|||++++++....
T Consensus 119 ~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (231)
T TIGR02752 119 TIGFGLRNVPD---------------------YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGK 177 (231)
T ss_pred EEecccccCCC---------------------HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhH
Confidence 99866544332 46789999999999999998664321
Q ss_pred --------------------CHHHHHHHHHHcCCcEEEEEecCCC
Q 025180 178 --------------------DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 --------------------~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
...++.+.+++.||....+.....+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g 222 (231)
T TIGR02752 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222 (231)
T ss_pred HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccc
Confidence 1245677888889987766655543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=125.96 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=90.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++..+ +++.+++|+|+++++++.|++++...+.+. +++++|+.+.... ..+.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~---~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL---NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS---TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc---CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEE
Confidence 467999999999999998888532 567899999999999999999999988875 9999999994222 22789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++.++++..+ ...+++.+.++|+++|++++....
T Consensus 78 ~~~~~l~~~~~---------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPD---------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSH---------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccC---------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99887643322 568899999999999999997765
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-17 Score=130.34 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=104.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch-hhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI-ASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~-~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. .|+.+|+|+|+++++++.|++++..+++.. .++++|+ ......+.+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 46789999999999999888776 567799999999999999999999888754 8999998 44322234678999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+++.|........ .........+++.+.++|||||++++++.......++.+.+++.|+...
T Consensus 115 V~~~~~~p~~~~~~-------------~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRH-------------HKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccc-------------cccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 99976431111000 0000114688999999999999999988777777788888988887644
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=135.18 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||||.++..+++.+ .+++.|+|+|+|+.|++.|++++...+... +++++|+.+. ++.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~---~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV---GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS---S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC---CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--cCCCCceeEE
Confidence 578999999999999887776653 356799999999999999999998877644 9999999886 4557999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
++..-+.+.++ ....+++++++|||||+++++..+......+...+
T Consensus 121 ~~~fglrn~~d---------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 121 TCSFGLRNFPD---------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEES-GGG-SS---------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EHHhhHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 99654433322 57889999999999999999876555443344333
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=122.02 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=98.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +++++|+++|+++.+++.+++|+..+++.. +++.+|.... ..++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEE
Confidence 36789999999999999888876 677899999999999999999998887654 7888886432 23689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+++.... .+..++..+.+.|+|||++++.........++.+.+.+.||...
T Consensus 102 ~~~~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 102 FIGGSGG------------------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred EECCCcc------------------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 9863210 14678889999999999999876566667788999999998643
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-16 Score=119.72 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=106.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.+++|+|||||.++++++.. +|.++++++|-++++++..++|.+..+.++ .++.+++.+.+... .+||.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~----~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALA----GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCE
Confidence 468999999999999999999966 788999999999999999999999999887 99999998887653 27999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|+.. |.. ..+.+++.+...|+|||++++..........+.+.+++.|+.
T Consensus 106 iFIG----------------------Gg~---~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIG----------------------GGG---NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEC----------------------CCC---CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 9873 222 278999999999999999999877777777889999999983
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=133.67 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.++++.+..+. .++++|||+|||||.+++.+++. +. .+|+|+|++|.+++.|++|+..|++..++....
T Consensus 148 T~lcl~~l~~~~-----~~g~~vLDvG~GSGILaiaA~kl----GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 148 TRLCLELLEKYV-----KPGKRVLDVGCGSGILAIAAAKL----GA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp HHHHHHHHHHHS-----STTSEEEEES-TTSHHHHHHHHT----TB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred HHHHHHHHHHhc-----cCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 788888887774 57899999999999999988886 22 379999999999999999999999987554432
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+ ...++||+|++|-- ...+..++..+.++|+|||+++++-.-..+..++.
T Consensus 218 ~~~----~~~~~~dlvvANI~------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~ 269 (295)
T PF06325_consen 218 SED----LVEGKFDLVVANIL------------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVI 269 (295)
T ss_dssp TSC----TCCS-EEEEEEES-------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred ecc----cccccCCEEEECCC------------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHH
Confidence 222 22478999999843 23467788889999999999999877666778888
Q ss_pred HHHHHcCCcEEEEE
Q 025180 184 LQMMEKGYAARIVV 197 (256)
Q Consensus 184 ~~~~~~g~~~~~~~ 197 (256)
+.+.+ ||......
T Consensus 270 ~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 270 EAYKQ-GFELVEER 282 (295)
T ss_dssp HHHHT-TEEEEEEE
T ss_pred HHHHC-CCEEEEEE
Confidence 88866 88764443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=126.67 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=84.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCC-cceEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNV-HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..+++.. .++++|+|+|+|++|++.|+++... ... +.+++++|+.+. ++.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~---~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKV---GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 467899999999999887777653 3457999999999999999877542 112 238899998775 3446789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++..+++.++ ...+++++.++|||||+++++..
T Consensus 147 D~V~~~~~l~~~~d---------------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVD---------------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999866654433 56889999999999999988764
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=137.24 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=114.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|. ++++... ++.+++.+++.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+|+.|++.|++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~ 337 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE 337 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH
Confidence 344455 4466655 7888888887764 246789999999999999988876 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++++|+.+.... +.+++||+|++||||.. ....++.+.+ ++|
T Consensus 338 n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------------------------~~~~~~~l~~-~~~ 392 (443)
T PRK13168 338 NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------------------------AAEVMQALAK-LGP 392 (443)
T ss_pred HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------------------------hHHHHHHHHh-cCC
Confidence 999998765 9999999876432 23467999999999852 2344555554 699
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025180 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
++++++++.+.+...++... .+.||.+..+.+.
T Consensus 393 ~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~~~ 425 (443)
T PRK13168 393 KRIVYVSCNPATLARDAGVL-VEAGYRLKRAGML 425 (443)
T ss_pred CeEEEEEeChHHhhccHHHH-hhCCcEEEEEEEe
Confidence 99999977666655565544 4678887766543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=136.55 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhc--CCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~--~~~f 116 (256)
++++|||+|||+|.+++.++.. ....|+++|+|+.+++.|++|+..|+++ .+++++|+.+.+.... .++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 6789999999999998765532 2348999999999999999999999974 3899999998765432 4589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHH----HHHHHHcCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQI----CLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~----~~~~~~~g~ 191 (256)
|+|++||||+...... .. .....+..++..+.++|+|||+++..+++.. ..+++ .+...+.|-
T Consensus 295 DlVilDPP~f~~~k~~---------l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 295 DVIVMDPPKFVENKSQ---------LM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred CEEEECCCCCCCChHH---------HH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999998654321 00 0122367788889999999999998766433 22333 333444565
Q ss_pred cEEEEEecCCCCcc
Q 025180 192 AARIVVQRSTEEEN 205 (256)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (256)
....+.....+.++
T Consensus 363 ~~~~l~~~~~~~Dh 376 (396)
T PRK15128 363 DVQFIEQFRQAADH 376 (396)
T ss_pred eEEEEEEcCCCCCC
Confidence 66666555444444
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=124.63 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=101.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~I 119 (256)
...+|||+|||+|.++..+++. +|+..++|+|+++.+++.|++++...++.+ +++++|+.+...... ++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 5679999999999999888877 788899999999999999999998888765 999999987654333 4589999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
++|+|-...... +. .. ......++..+.++|||||.+++.+.......++...+...+ |.
T Consensus 92 ~~~~pdpw~k~~----h~-~~--------r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~ 152 (194)
T TIGR00091 92 FLNFPDPWPKKR----HN-KR--------RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFE 152 (194)
T ss_pred EEECCCcCCCCC----cc-cc--------ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeE
Confidence 998752111100 00 00 011367899999999999999998765555666677777665 44
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=135.29 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..++.++.. .++..|+|+|+++.+++.+++|+..+++...++++|+.+.......++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILEL----APQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 57899999999999999888887 34469999999999999999999999887789999987643222246799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-CCc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK-GYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~-g~~ 192 (256)
+|||+...... .+.+...|...... ......++..+.++|||||++++++++.. ....+...++++ ++.
T Consensus 319 ~D~Pcs~~G~~---~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 395 (427)
T PRK10901 319 LDAPCSATGVI---RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAE 395 (427)
T ss_pred ECCCCCccccc---ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCE
Confidence 99998743221 12222222211110 12356889999999999999999887544 233455566554 343
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-16 Score=124.36 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=83.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.+++. +++|+|+|+|+.+++.+++++...++.. ++...|+.+... +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CCCcCEEE
Confidence 5689999999999998887764 4699999999999999999998887764 788888876522 36799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..++..+. .....++..+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEA-------------------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876543322 126789999999999999966543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=127.40 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=92.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+|++ ++.|+|+|+++++++.|+....++++..+..+..+.+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEE
Confidence 37899999999999999988887 57999999999999999999999998877777777766433 27999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
|.=...|.++ .+.++..|.+++||||.+++++...+....+
T Consensus 130 cmEVlEHv~d---------------------p~~~~~~c~~lvkP~G~lf~STinrt~ka~~ 170 (243)
T COG2227 130 CMEVLEHVPD---------------------PESFLRACAKLVKPGGILFLSTINRTLKAYL 170 (243)
T ss_pred EhhHHHccCC---------------------HHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence 9644444433 4679999999999999999988766544433
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=134.77 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=113.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.+...+..++..++.. .++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+..++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~~------~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 229 DGLITIQDESSMLVAPALDP------KGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred CceEEEEChHHHHHHHHhCC------CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34455555544444443332 4678999999999999999888742 45699999999999999999999998
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEE
Q 025180 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l 169 (256)
+.. +++++|+.+....+ .++||+|++|||+..... ....+...|....... .....++..+.++|||||++
T Consensus 300 ~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 300 LTNIETKALDARKVHEKF-AEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred CCeEEEEeCCcccccchh-cccCCEEEEcCCCCCCee---eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 865 88999987754332 368999999999763321 1222333332221111 13457899999999999999
Q ss_pred EEEEeCCCC---HHHHHHHHHHc-CCcE
Q 025180 170 YLVTLTAND---PSQICLQMMEK-GYAA 193 (256)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~-g~~~ 193 (256)
++++++... ...+...++++ .|+.
T Consensus 376 vystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 376 VYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred EEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 988776532 23445555554 3543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=143.27 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ...|+++|+|+.+++.|++|+..|++. .+++++|+.+.+... ..+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCE
Confidence 5789999999999999988874 2 236999999999999999999999985 389999998876443 568999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++||||+....... ..+ .....+..++..+.++|+|||++++.++... .....+.+.+.|+....+..
T Consensus 612 IilDPP~f~~~~~~~------~~~----~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 612 IFIDPPTFSNSKRME------DSF----DVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred EEECCCCCCCCCccc------hhh----hHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEec
Confidence 999999986533200 000 1123467889999999999999988665443 34447778888999888877
Q ss_pred cCCCCccE
Q 025180 199 RSTEEENL 206 (256)
Q Consensus 199 ~~~~~~~~ 206 (256)
...+.++.
T Consensus 681 ~~~~~Dhp 688 (702)
T PRK11783 681 KTLPPDFA 688 (702)
T ss_pred CCCCCCCC
Confidence 66665553
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=130.01 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. + +++|+|+|+++.+++.++++....++. .+++.+|+.+. ++.+++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~----~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK----Y-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccE
Confidence 56789999999999998887775 3 569999999999999999998887764 38999998765 344689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...+++++.++|||||++++++.
T Consensus 190 V~s~~~~~h~~d---------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPD---------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCC---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 999755444332 46789999999999999998653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=125.71 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=85.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++++++.|+++....++. .+++++|+.+.. +..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCE
Confidence 45689999999999998877765 458999999999999999999888764 388999987753 234578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.++.+..+ ...++..+.++|||||+++++..
T Consensus 116 V~~~~vl~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 116 ILFHAVLEWVAD---------------------PKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEehhHHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEEEE
Confidence 999766543322 35789999999999999987643
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-15 Score=122.59 Aligned_cols=133 Identities=24% Similarity=0.306 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+.... .++.+|||+|||+|.+++.+++. +. ..|+|+|+++.+++.|++|+..+++...+...+
T Consensus 106 t~~~l~~l~~~~-----~~~~~VLDiGcGsG~l~i~~~~~----g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~ 175 (250)
T PRK00517 106 TRLCLEALEKLV-----LPGKTVLDVGCGSGILAIAAAKL----GA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175 (250)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence 555556555442 47899999999999988766554 33 269999999999999999999888743221110
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
.+.+||+|++|... .....++..+.++|||||++++.........++.
T Consensus 176 --------~~~~fD~Vvani~~------------------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~ 223 (250)
T PRK00517 176 --------GDLKADVIVANILA------------------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVL 223 (250)
T ss_pred --------CCCCcCEEEEcCcH------------------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHH
Confidence 01279999997431 2356788999999999999999766666677889
Q ss_pred HHHHHcCCcEEEEEe
Q 025180 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
..+.+.||.......
T Consensus 224 ~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 224 EAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998765544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=116.71 Aligned_cols=127 Identities=17% Similarity=0.293 Sum_probs=100.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cc-eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++.+ .++.+|+++|+++.+++.+++|+..+++ .. .++.+|..+.... ..++||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCE
Confidence 578999999999999999888764 2456899999999999999999998884 33 7888888765433 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+++... .....+++.+.+.|+|||++++.........++...+++.||....
T Consensus 115 V~~~~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 115 IFIGGGS------------------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred EEECCCc------------------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 9995321 1256889999999999999998666555667888888888986543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-16 Score=123.31 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=83.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.+++.+++. ++.|+|+|+++.+++.++++...++++..+...|+.... .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---ccCCCCEEEE
Confidence 5689999999999998888764 468999999999999999998887776677777765432 1357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.++++.+.. ....+++.+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAG-------------------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHH-------------------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 9887654322 25788999999999999966653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=119.27 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
|+.++.+.+.+++.+... .++.+|||+|||+|.++++++.. . ..+|+++|+++.+++.+++|++.+++.. .+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 444566666665554321 35689999999999999865443 2 2489999999999999999999998754 89
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEe
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTL 174 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 174 (256)
+++|+.+.+.. ...+||+|++||||... ....+++.+.. +|+|+|++++.+.
T Consensus 107 ~~~D~~~~l~~-~~~~fDlV~~DPPy~~g----------------------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 107 VNTNALSFLAQ-PGTPHNVVFVDPPFRKG----------------------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EEchHHHHHhh-cCCCceEEEECCCCCCC----------------------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99999876532 23579999999998521 13444555443 4899999998554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=122.83 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.6
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
|...++.+.+.+++.... ..++.+|||+|||+|.+++.+++. .++.+++++|+++++++.|+++.... ..++
T Consensus 93 ~~~~~e~~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~----~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~ 164 (340)
T PLN02490 93 PGHWTEDMRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLK--ECKI 164 (340)
T ss_pred cCcchHHHHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhhhcc--CCeE
Confidence 444455666655554321 246789999999999988877776 44568999999999999999876422 2378
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+.+|+.+. ++.+++||+|+++..+.+.++ ...+++++.++|+|||+++++.+.
T Consensus 165 i~gD~e~l--p~~~~sFDvVIs~~~L~~~~d---------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 165 IEGDAEDL--PFPTDYADRYVSAGSIEYWPD---------------------PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EeccHHhC--CCCCCceeEEEEcChhhhCCC---------------------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 88998765 334578999999876654332 357899999999999999886532
Q ss_pred ------------CCCHHHHHHHHHHcCCcEEEEEe
Q 025180 176 ------------ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ------------~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+++.+++++.||+.+.+..
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 12457888999999999766554
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-15 Score=125.57 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=115.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.|.+-.-.++..+.+. .. .++|..|||+.||||.+++++..+ |+.++|+|++..|++-|+.|+...++.
T Consensus 175 f~~p~s~~P~lAR~mVNL-a~--v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNL-AR--VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHH-hc--cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcC
Confidence 555654444555555543 22 258899999999999999998877 679999999999999999999988866
Q ss_pred c-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 97 A-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. .+... |+.... +.+.++|.|+++|||......... .-...+..+++.+.++|++||++++..+
T Consensus 246 ~~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~------------~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 DYPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGE------------GLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceeEEEecccccCC--CCCCccceEEecCCCCcccccccc------------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 45555 877763 444579999999999876643211 1124578999999999999999999765
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecC
Q 025180 175 TANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
......+.+.+|++...+...
T Consensus 312 -----~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 -----RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -----CcchhhHhhcCceEEEEEEEe
Confidence 234556677889876655443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=121.96 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=89.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+|.+....++ ... ..+.+|||+|||+|.+++.++..+.. .+...|+|+|+++.+++.|++|..
T Consensus 30 ~GqFfTP~~iAr~~~---i~~------~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 30 LGAFFTPIGLARDFT---IDA------CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred CCccCCCHHHHHHHH---Hhc------cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc--
Confidence 355888865433322 111 24689999999999999988876431 135689999999999999998753
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
...++++|+.... .+++||+||+||||+....... .+...+......++..+.+++++|+.
T Consensus 98 --~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~---------~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 98 --EATWINADALTTE---FDTLFDMAISNPPFGKIKTSDF---------KGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred --CCEEEEcchhccc---ccCCccEEEECCCCCCcccccc---------CCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2488889987642 2468999999999997543110 11122445677889999886666664
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=124.20 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=109.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.|.+...+..++..++. .+++.+|||+|||+|..++.++..+. ....|+++|+++.+++.+++|+.++++.
T Consensus 52 ~~~~qd~~s~~~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 52 LYYIQEASSMIPPLALE------PDPPERVLDMAAAPGGKTTQISALMK---NEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred eEEEECHHHHHHHHHhC------CCCcCEEEEECCCchHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 34555445555544443 25789999999999999999888754 2358999999999999999999999876
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEE
Q 025180 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+ .+++.|...... ..+.||.|++|||+.... ...+.+...|.-.... ......+|..+.++|||||++++
T Consensus 123 ~v~~~~~D~~~~~~--~~~~fD~Vl~D~Pcsg~G---~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 123 NVAVTNFDGRVFGA--AVPKFDAILLDAPCSGEG---VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred cEEEecCCHHHhhh--hccCCCEEEEcCCCCCCc---ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5 888889766432 235699999999986322 2222333322111111 11355789999999999999999
Q ss_pred EEeCCCCH--HHHHHHHHH
Q 025180 172 VTLTANDP--SQICLQMME 188 (256)
Q Consensus 172 ~~~~~~~~--~~~~~~~~~ 188 (256)
++++.... +++.+.+.+
T Consensus 198 stcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 198 STCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EeCCCChHHHHHHHHHHHH
Confidence 98876643 334444433
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-15 Score=127.05 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+++++++.|+++....+. ...++++|+.+.. ..+++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--hccCCCCE
Confidence 35679999999999988777653 56999999999999999988766554 3488899987652 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++.-.+.+..+ ...+++.+.++|||||.+++.+...
T Consensus 202 Vi~~~vLeHv~d---------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g 260 (322)
T PLN02396 202 VLSLEVIEHVAN---------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG 260 (322)
T ss_pred EEEhhHHHhcCC---------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC
Confidence 999655444333 4688999999999999999875321
Q ss_pred -------CCHHHHHHHHHHcCCcEEEE
Q 025180 177 -------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -------~~~~~~~~~~~~~g~~~~~~ 196 (256)
-..+++.+.+++.||+...+
T Consensus 261 th~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 261 THQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 12467777888888876544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=111.76 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=94.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+|+|||||.+++.++.+ ++ ..|+|+|+++++++.+++|..+..-...++.+|+.+. ...+|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l----Ga-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL----GA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc----CC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceEE
Confidence 47889999999999999988876 44 4899999999999999999998665669999999876 46799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.||||...... ++ ..+++++++.+ -+++- .+.....+.+.+.....|+.+...+
T Consensus 114 mNPPFG~~~rh------aD---------r~Fl~~Ale~s-------~vVYs-iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 114 MNPPFGSQRRH------AD---------RPFLLKALEIS-------DVVYS-IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ECCCCcccccc------CC---------HHHHHHHHHhh-------heEEE-eeccccHHHHHHHHHhcCCeEEEEE
Confidence 99999754221 12 23455666554 23444 3445567888999999998776554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=117.00 Aligned_cols=156 Identities=26% Similarity=0.337 Sum_probs=102.5
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..|.+-.+.++..++..-.. +++..|||+.||+|.++++.+.+.....| ...++|+|+++++++.|++|+..
T Consensus 7 ~~~a~L~~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 44555567777777765432 57889999999999999999988443221 11399999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 93 HNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.++.. .+.++|+.+.. ...+++|.|++||||........ .....+..+++.+.++|++ ..++
T Consensus 84 ag~~~~i~~~~~D~~~l~--~~~~~~d~IvtnPPyG~r~~~~~-------------~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP--LPDGSVDAIVTNPPYGRRLGSKK-------------DLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp TT-CGGEEEEE--GGGGG--GTTSBSCEEEEE--STTSHCHHH-------------HHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred cccCCceEEEecchhhcc--cccCCCCEEEECcchhhhccCHH-------------HHHHHHHHHHHHHHHHCCC-CEEE
Confidence 88765 78888988874 34579999999999975433210 0134578889999999999 4444
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 171 LVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+ +.... .+.+.+...++.....
T Consensus 148 l-~~~~~---~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 148 L-TTSNR---ELEKALGLKGWRKRKL 169 (179)
T ss_dssp E-EESCC---CHHHHHTSTTSEEEEE
T ss_pred E-EECCH---HHHHHhcchhhceEEE
Confidence 4 33332 3456666656554433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=125.68 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=87.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+|+.|++.|++++...+.. .+++++|+.+... ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~--~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCE
Confidence 4678999999999998877776433 47889999999999999999999887664 4889999876521 35999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|||||.+++...
T Consensus 129 vv~~~~l~~l~~~-------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998766544322 146889999999999999999764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=130.72 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=114.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh--hcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK--RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD 117 (256)
.++.+|||+|||+|..++.++..+. +.+.|+++|+++.+++.+++|+..+|+.+ .++++|+.+.... ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG---DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 5789999999999999998888753 34589999999999999999999999865 8889998765321 2246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK- 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~- 189 (256)
.|++|+|...... ..+.+...|.-.... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 328 ~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 328 RILLDAPCSGLGT---LHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EEEEeCCCCcccc---cccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999653221 112222222111100 11356889999999999999999887663 233556666665
Q ss_pred CCcEEE----EEecCCCCccEEEEEEEe
Q 025180 190 GYAARI----VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 190 g~~~~~----~~~~~~~~~~~~l~~~~~ 213 (256)
+|.... +++..+..+.+|+-..+|
T Consensus 405 ~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 405 DWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 465332 233333445556555554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-15 Score=124.37 Aligned_cols=133 Identities=23% Similarity=0.373 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
+.++.+++.... .++.+|||+|||+|.+++.+++. + ..+|+|+|+++.+++.|++|+..+++.. .+..
T Consensus 146 t~l~l~~l~~~~-----~~g~~VLDvGcGsG~lai~aa~~----g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~ 215 (288)
T TIGR00406 146 TSLCLEWLEDLD-----LKDKNVIDVGCGSGILSIAALKL----G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215 (288)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCChhHHHHHHHHc----C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 445445444332 46799999999999998877654 2 3489999999999999999999988764 4455
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+... ..+++||+|++|... ..+..++..+.++|||||+++++........+
T Consensus 216 ~~~~~----~~~~~fDlVvan~~~------------------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~ 267 (288)
T TIGR00406 216 IYLEQ----PIEGKADVIVANILA------------------------EVIKELYPQFSRLVKPGGWLILSGILETQAQS 267 (288)
T ss_pred ccccc----ccCCCceEEEEecCH------------------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHH
Confidence 54322 224689999998531 22567889999999999999997766666677
Q ss_pred HHHHHHHcCCcEEE
Q 025180 182 ICLQMMEKGYAARI 195 (256)
Q Consensus 182 ~~~~~~~~g~~~~~ 195 (256)
+.+.+.+. |....
T Consensus 268 v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 268 VCDAYEQG-FTVVE 280 (288)
T ss_pred HHHHHHcc-Cceee
Confidence 88888765 76544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=129.05 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=112.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.++.+.....+..++..++.. .++.+|||+|||+|..+..++..+. .++.|+|+|+++.+++.+++++...
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~------~~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNP------QPGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCC------CCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHh
Confidence 344455554455554444432 4778999999999999988887653 2458999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeE
Q 025180 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~ 168 (256)
++.. +++++|+.+... +++||+|+++||+.....- .+.++..|....... .....++..+.++|||||+
T Consensus 299 g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~---~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGVL---GRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcchh---hcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 8865 889999876532 3689999999997543221 122222222111111 1345789999999999999
Q ss_pred EEEEEeCCCCH---HHHHHHHHHc-CCc
Q 025180 169 LYLVTLTANDP---SQICLQMMEK-GYA 192 (256)
Q Consensus 169 l~~~~~~~~~~---~~~~~~~~~~-g~~ 192 (256)
+++.+++.... ..+..+++.+ +|.
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 99999877532 3445566554 344
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=122.22 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=99.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.+++.. .+..+|+|+|+++.+++.|+++....+... +++.+|+.+. ++.+++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV---GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 478999999999999877666653 345689999999999999999998877654 8888998764 2335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------C
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------N 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~ 177 (256)
+++..++..++ ...+++++.++|||||++++..... .
T Consensus 151 i~~~v~~~~~d---------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 151 ISNCVINLSPD---------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred EEcCcccCCCC---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 99876654332 3578999999999999999854211 1
Q ss_pred CHHHHHHHHHHcCCcEEEE
Q 025180 178 DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~ 196 (256)
...++.+++++.||....+
T Consensus 210 ~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CHHHHHHHHHHCCCCceEE
Confidence 2346677777778776544
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=110.07 Aligned_cols=100 Identities=22% Similarity=0.387 Sum_probs=76.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC-CC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN-PP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n-pP 124 (256)
|||+|||+|..+..++..+ .+.+..+++|+|++++|++.++++....+.+.+++++|+.+.. ...++||+|++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~--~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP--FSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--HHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--ccCCCeeEEEEcCCc
Confidence 7999999999999998886 3335579999999999999999999887777799999998853 346799999993 32
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+.+.++ .....+++.+.++|+|||
T Consensus 78 ~~~~~~-------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSP-------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSH-------------------HHHHHHHHHHHHTEEEEE
T ss_pred cCCCCH-------------------HHHHHHHHHHHHHhCCCC
Confidence 333222 237899999999999998
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=106.64 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..+++. .++.+++++|+++.+++.+++++..++... .++.+|
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 77 (124)
T TIGR02469 5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARL----VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD 77 (124)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 444555555543 245679999999999999888876 566799999999999999999998887654 788888
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...... ...+||+|++..+. .....+++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~-~~~~~D~v~~~~~~------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 78 APEALED-SLPEPDRVFIGGSG------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccChh-hcCCCCEEEECCcc------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7643222 23689999995421 114688999999999999999853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-14 Score=113.88 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=97.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+...++..+..+...++.+|||+|||+|.++..++... +...|+|+|+++.|++.+.+++... .+..++.+|+.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v----~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~ 130 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIV----EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADAR 130 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCC
Confidence 334444443311233678999999999999999888874 3458999999999999887776543 22377888876
Q ss_pred hchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------CCC-
Q 025180 106 SGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------TAN- 177 (256)
Q Consensus 106 ~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~~~- 177 (256)
+... ....++||+|+++.+.. .....+++.+.++|||||+++++.+ ...
T Consensus 131 ~~~~~~~l~~~~D~i~~d~~~p-----------------------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 131 KPERYAHVVEKVDVIYQDVAQP-----------------------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred CcchhhhccccCCEEEECCCCh-----------------------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 5311 11235699999864310 0124568899999999999999422 111
Q ss_pred --CHHHHHHHHHHcCCcEEEEEec
Q 025180 178 --DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 178 --~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...+..+.+++.||+.......
T Consensus 188 ~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 188 KEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1123568888899997766543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-14 Score=112.51 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
......++..+. ..++.+|||+|||+|.+++.++.. .++..|+++|+++++++.+++|+..++... +++.+|
T Consensus 26 ~~v~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 26 REVRLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 333334455443 246789999999999999888765 566799999999999999999999888754 888899
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.... ....+|.++.+.. .....+++.+.++|+|||++++.........++.
T Consensus 99 ~~~~~~~-~~~~~d~v~~~~~-------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 152 (196)
T PRK07402 99 APECLAQ-LAPAPDRVCIEGG-------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAIS 152 (196)
T ss_pred hHHHHhh-CCCCCCEEEEECC-------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHH
Confidence 8664322 1234677665311 0146889999999999999999776554444555
Q ss_pred HHHHHc
Q 025180 184 LQMMEK 189 (256)
Q Consensus 184 ~~~~~~ 189 (256)
+.+...
T Consensus 153 ~~~~~~ 158 (196)
T PRK07402 153 EGLAQL 158 (196)
T ss_pred HHHHhc
Confidence 666554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-15 Score=127.23 Aligned_cols=130 Identities=22% Similarity=0.195 Sum_probs=102.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+..+||||||+|.+++.+|.. .|+..++|+|+++.+++.|.+++..+++.+ .++++|+......+.++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35679999999999999988887 788999999999999999999999988876 8999998776545557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
+++.|... +... ++ +.....++..+.++|+|||.+.+.+............+.+.
T Consensus 197 ~lnFPdPW-~Kkr------HR--------Rlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPW-DKKP------HR--------RVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCc-cccc------hh--------hccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99876321 1100 01 12357899999999999999999887666556666666555
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=122.77 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=105.9
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|. +++.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~---~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~ 213 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWVRE---LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQ 213 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHH
Confidence 344555 4444433 55666666555432 35689999999999999888874 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|+..++++. +++++|+.+.... ..+.||+|++|||..-. ...+++.+ ..++|++
T Consensus 214 n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~G~-----------------------~~~~~~~l-~~~~~~~ 268 (315)
T PRK03522 214 SAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNPPRRGI-----------------------GKELCDYL-SQMAPRF 268 (315)
T ss_pred HHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECCCCCCc-----------------------cHHHHHHH-HHcCCCe
Confidence 999999864 9999999876532 23579999999995310 12333333 3368888
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 168 WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++.+.....++... .||+...+.
T Consensus 269 ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 269 ILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred EEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 888877666666666554 478776654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=121.19 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
...++.+++.+. ..++.+|||+|||+|.++..++.. +..++++|+++.+++.++++.. ...++++|+
T Consensus 28 ~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~ 94 (251)
T PRK10258 28 RQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA----ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCc
Confidence 444455555543 245789999999999987666543 4689999999999999988642 236788888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|+++.++...++ ...++.++.++|+|||.+++++.......++..
T Consensus 95 ~~~--~~~~~~fD~V~s~~~l~~~~d---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~ 151 (251)
T PRK10258 95 ESL--PLATATFDLAWSNLAVQWCGN---------------------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQ 151 (251)
T ss_pred ccC--cCCCCcEEEEEECchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHH
Confidence 764 334578999999877653322 468899999999999999998765544444444
Q ss_pred HH
Q 025180 185 QM 186 (256)
Q Consensus 185 ~~ 186 (256)
.+
T Consensus 152 ~~ 153 (251)
T PRK10258 152 AW 153 (251)
T ss_pred HH
Confidence 33
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=120.79 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=91.1
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+-++.+.|.-. .-.+.++..+. ..++.+|||+|||+|..+..++.. . +++|+|+|+++.+++.|+++...
T Consensus 28 ~g~~~~~~gg~--~~~~~~l~~l~---l~~~~~VLDiGcG~G~~a~~la~~----~-~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 28 FGEDYISSGGI--EATTKILSDIE---LNENSKVLDIGSGLGGGCKYINEK----Y-GAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred hCCCCCCCCch--HHHHHHHHhCC---CCCCCEEEEEcCCCChhhHHHHhh----c-CCEEEEEECCHHHHHHHHHHcCc
Confidence 33455555432 11344444432 257899999999999987776653 2 56999999999999999987653
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.....+..+|+.+. ++.+++||+|++...+.+.+. .....+++++.++|||||++++.
T Consensus 98 -~~~i~~~~~D~~~~--~~~~~~FD~V~s~~~l~h~~~-------------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 98 -KNKIEFEANDILKK--DFPENTFDMIYSRDAILHLSY-------------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred -CCceEEEECCcccC--CCCCCCeEEEEEhhhHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 22347888888654 334578999999654433221 12578899999999999999987
Q ss_pred Ee
Q 025180 173 TL 174 (256)
Q Consensus 173 ~~ 174 (256)
..
T Consensus 156 d~ 157 (263)
T PTZ00098 156 DY 157 (263)
T ss_pred Ee
Confidence 64
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=123.65 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .|+++|+|+|+++.|++.|+++ ..+++++|+.+.. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~---~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK---PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC---CCCCceEEE
Confidence 57799999999999998877776 6778999999999999998763 2478889987652 246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.++ ...++.++.+.|||||++++..
T Consensus 95 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPE---------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCC---------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 9988765543 4678999999999999999864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=118.64 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+++.|++.|++++...+. ..+++++|+.+... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCE
Confidence 4678999999999999888877643 4678999999999999999999876553 34889999877532 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPE-------------------DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEeec
Confidence 9997665443321 146889999999999999999764
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-14 Score=124.99 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..++..+ +++.|+|+|+++.+++.+++|++..++...+ ..+|..........++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~----~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELA----PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 578999999999999999888874 3569999999999999999999998876533 5566543321112467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
|++++|+.....- .+.+...|..... -......++..+.++|||||++++++++.. ....+...+.++
T Consensus 313 VllDaPcSg~G~~---~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 313 ILLDAPCSATGVI---RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred EEEcCCCCCCccc---ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 9999997654321 1222222221111 112357889999999999999999998774 344555666655
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=124.97 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+ +++..+. .+.+++.+.+.+.. .++.+|||+|||+|.++++++.. +..|+|+|+++.+++.|++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~---~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVRE---IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH
Confidence 445555 4444443 55555555554421 34679999999999999888753 3589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|+..++++. +++.+|+.+.... ...+||+|++|||+... ...+++.+. .++|++
T Consensus 274 N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~G~-----------------------~~~~l~~l~-~~~p~~ 328 (374)
T TIGR02085 274 SAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNPPRRGI-----------------------GKELCDYLS-QMAPKF 328 (374)
T ss_pred HHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECCCCCCC-----------------------cHHHHHHHH-hcCCCe
Confidence 999998854 8999999876533 22469999999997310 134445554 379999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 168 WLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++.+.+...++..+ .||....+..
T Consensus 329 ivyvsc~p~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred EEEEEeCHHHHHHHHHHh---cCceEEEEEE
Confidence 999977656655565554 5787766543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=114.27 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=93.8
Q ss_pred CccccCCc--hHHHHHHHHHh-hcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 16 EVYEPCDD--SFALVDALLAD-RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~--~~~l~~~l~~~-~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
...+|+++ .+.+.+++... + ++.+|||+.||||.++++++.. +. ..|+.||.++.+++..++|++.
T Consensus 19 ~~~RPT~drvrealFniL~~~~~------~g~~vLDLFaGSGalGlEALSR----GA-~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNL------EGARVLDLFAGSGALGLEALSR----GA-KSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-H------TT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHHHHHHHhccccc------CCCeEEEcCCccCccHHHHHhc----CC-CeEEEEECCHHHHHHHHHHHHH
Confidence 57888887 67777777665 3 6899999999999999998776 22 4899999999999999999999
Q ss_pred cCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccC
Q 025180 93 HNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKR 166 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lkpg 166 (256)
.+... .++..|....+... ...+||+|+++|||.... .+..++..+. .+|+++
T Consensus 88 l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------------------~~~~~l~~l~~~~~l~~~ 146 (183)
T PF03602_consen 88 LGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------------------YYEELLELLAENNLLNED 146 (183)
T ss_dssp HT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------------------HHHHHHHHHHHTTSEEEE
T ss_pred hCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---------------------HHHHHHHHHHHCCCCCCC
Confidence 88765 88899987776543 357899999999996321 1355666665 789999
Q ss_pred eEEEEEEeCC
Q 025180 167 GWLYLVTLTA 176 (256)
Q Consensus 167 G~l~~~~~~~ 176 (256)
|.+++-+...
T Consensus 147 ~~ii~E~~~~ 156 (183)
T PF03602_consen 147 GLIIIEHSKK 156 (183)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEecCC
Confidence 9999965433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=111.12 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE
Q 025180 24 SFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~ 100 (256)
.+.+++|+.+.+.... ++...+|||+|||+|.++..+++. .-...++|+|+++.+++.|+...++.+.++ ++.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence 5667788877765211 233349999999999998777776 444579999999999999988888888875 899
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025180 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
+.|+.+. .+..+.||+|+--..|-..+-.. .+..+. +.-++..+.++|+|||++++..+++. .+
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~-----------d~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T-~d 187 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSP-----------DGPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT-KD 187 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCC-----------CCcccc--eeeehhhHhhccCCCcEEEEEecCcc-HH
Confidence 9999886 44567888887644432211100 011111 24457788889999999999888776 78
Q ss_pred HHHHHHHHcCCcE
Q 025180 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++.+.+...+|..
T Consensus 188 ELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 188 ELVEEFENFNFEY 200 (227)
T ss_pred HHHHHHhcCCeEE
Confidence 8889998888664
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=125.89 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. +++.|+++|+++.+++.+++|+.+.++.. .+.++|..... ....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 5788999999999999998888753 35699999999999999999999998865 88899987642 1234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++|+|+...... ...+...|...... ...+.+++..+.++|||||++++++++..
T Consensus 312 l~DaPCsg~G~~---~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTA---RNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccc---cCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999999654432 12222222111111 12457889999999999999999998765
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=122.49 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++++|+|+|+++.+++.|++++. ...++.+|+.+... ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQP---PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCC---CCCccEEE
Confidence 56799999999999998888776 567899999999999999988742 23788889876532 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..++...+ ...+++.+.+.|||||++++..+
T Consensus 99 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPD---------------------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCC---------------------HHHHHHHHHHhcCCCcEEEEECC
Confidence 9987754432 46789999999999999998654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=116.82 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++... ++..|+++|+++++++.|++++..++++. +++.+|
T Consensus 63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~---~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVG---RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 345566666553 25789999999999999988888743 24579999999999999999999988765 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+.... ..+||+|+++++. ..+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEP--LAPYDRIYVTAAG---------------------------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcc--cCCCCEEEEcCCc---------------------------ccccHHHHHhcCcCcEEEEEE
Confidence 8765432 3689999997653 223445677899999999843
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-15 Score=105.12 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=73.4
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
||+|||+|..+..+++. ++.+++++|+++++++.++++....+. .+..+|+.+. ++.+++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l--~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDL--PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSS--SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhC--cccccccccccccccee
Confidence 89999999987766664 567999999999999999997754333 4899998887 55578999999975544
Q ss_pred CCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 127 PTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. .....+++++.++|||||++++
T Consensus 72 ~~---------------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL---------------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS---------------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec---------------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 33 1268999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-14 Score=126.76 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.++.. . +++|+|+|+|+.+++.|+++.........++.+|+.+.. +.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~----~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAEN----F-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--CCCCCEEEEE
Confidence 46789999999999998877765 2 569999999999999999887544434588899987652 2347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...++.+++++|||||++++...
T Consensus 338 s~~~l~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 338 SRDTILHIQD---------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ECCcccccCC---------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9766654433 46889999999999999998653
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-14 Score=115.50 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=97.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++|||+|||+|..+..+++. +++++++|+|+|+++++.+++++...++.. +++..|+..... +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~----~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER----HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeeh
Confidence 47999999999988877776 567899999999999999999998877654 888888865421 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHH
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~ 186 (256)
.-.+.+..+ ...+++.+.++|+|||++++..... ....++.+.+
T Consensus 74 ~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 74 FEVIHHIKD---------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred HHHHHhCCC---------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 533322211 4688999999999999999865421 1235677888
Q ss_pred HHcCCcEEEEEec
Q 025180 187 MEKGYAARIVVQR 199 (256)
Q Consensus 187 ~~~g~~~~~~~~~ 199 (256)
.+.||........
T Consensus 133 ~~~Gf~~~~~~~~ 145 (224)
T smart00828 133 ARNNLRVVEGVDA 145 (224)
T ss_pred HHCCCeEEEeEEC
Confidence 8899987655443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=114.62 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+.+.+++.+. ..++.+|||+|||+|..+..+++.+. +.++|+++|+++++++.|++|+..++.. .+++.+
T Consensus 58 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~---~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 58 PHMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIE---RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 445556666543 25778999999999999988887643 3458999999999999999999988875 388999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.+..+. .++||+|+++... ..+...+.+.|+|||++++..
T Consensus 132 d~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 132 DGKRGLEK--HAPFDAIIVTAAA---------------------------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcccCCcc--CCCccEEEEccCc---------------------------chhhHHHHHhcCcCcEEEEEE
Confidence 98775433 4689999997542 233456778999999998743
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=122.68 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=84.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++..++++.++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~---~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI---QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc---cCCccEEEE
Confidence 4569999999999998888764 4699999999999999999998888866888888765422 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..+++.+. .....+++.+.++|+|||+++++.
T Consensus 191 ~~vl~~l~~-------------------~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNR-------------------ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCH-------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876654322 126788999999999999977654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=123.99 Aligned_cols=190 Identities=17% Similarity=0.236 Sum_probs=110.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhc---ccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLG---QEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~---~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+|+|.....++++++ . ..++.+|+|++||+|.+++++...+. .......++|+|+++.++..|+-|+..
T Consensus 27 ~~~TP~~i~~l~~~~~----~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLL----N---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp GC---HHHHHHHHHHH----T---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHhhh----h---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4789965555555554 2 24678999999999999988887541 113467999999999999999999887
Q ss_pred cCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCC--Ccccccccchhhh-cCCCCcHHHHHHHHHHHhhccccC
Q 025180 93 HNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTP--EDEVGREGIASAW-AGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
++... .+..+|............||+|++||||.... ..... ....... ...... ....++..+.+.|++|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELE-KDERFKKYFPPKSN--AEYAFIEHALSLLKPG 176 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGC-TTCCCTTCSSSTTE--HHHHHHHHHHHTEEEE
T ss_pred hccccccccccccccccccccccccccccccCCCCcccccccccccc-ccccccccCCCccc--hhhhhHHHHHhhcccc
Confidence 77554 48888876553221246899999999998762 22111 1111111 111111 1234788899999999
Q ss_pred eEEEEEEeCC----C-CHHHHHHHHHHcCC-cEEEEEec-C--CCCccEEEEEEEecC
Q 025180 167 GWLYLVTLTA----N-DPSQICLQMMEKGY-AARIVVQR-S--TEEENLHIIKFWRDF 215 (256)
Q Consensus 167 G~l~~~~~~~----~-~~~~~~~~~~~~g~-~~~~~~~~-~--~~~~~~~l~~~~~~~ 215 (256)
|++.++.+.. . ....+++.+.+.+. ..+...+. . .......++.+.+..
T Consensus 177 G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 177 GRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp EEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred cceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence 9998888743 1 23467777766543 32232222 1 123345566666655
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=130.28 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=90.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..+..++.. .|+.+++|+|+++.|++.|+++....+.+..++++|+.+....+.+++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 5789999999999987777665 678899999999999999999877666555788899877532245688999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++.....-. ..+..........+++.+.++|||||++++...
T Consensus 494 n~vLH~L~syIp--------~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIE--------YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcc--------cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 988753211000 000000123467899999999999999999764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=118.02 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-+++.+|||+|||.|.+++.+++. + +++|+|+.+|++..+.+++.+...|+.. ++...|..+. +.+||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~----~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAER----Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHH----H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHH----c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----CCCCC
Confidence 368999999999999998888887 4 6899999999999999999999998865 7888888764 24899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|++--.+-+. + ...+..+++.+.++|||||++++-..
T Consensus 130 ~IvSi~~~Ehv---------------g----~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 130 RIVSIEMFEHV---------------G----RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEEESEGGGT---------------C----GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEEechhhc---------------C----hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99994222111 1 12378999999999999999987443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=115.65 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=91.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchhhhcCCCcc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
..++++|||+|||+|.++..++.. +++ .|+|+|.|+.++..++..-... .....+...++.+... ..+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~----g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH----GAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCCcC
Confidence 357899999999999987666654 433 7999999999987653322211 1223677777766532 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------------------- 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 176 (256)
+|+|+-.+++..+ ...++.++++.|+|||.+++.+...
T Consensus 191 ~V~s~gvL~H~~d---------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~ 249 (314)
T TIGR00452 191 TVFSMGVLYHRKS---------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY 249 (314)
T ss_pred EEEEcchhhccCC---------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc
Confidence 9999876655433 4678999999999999999853210
Q ss_pred --CCHHHHHHHHHHcCCcEEEEE
Q 025180 177 --NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++..++++.||+.+.+.
T Consensus 250 flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 250 FIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEE
Confidence 024567788888999876654
|
Known examples to date are restricted to the proteobacteria. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.7e-14 Score=121.53 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhc--CCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRL--AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~--~~~ 115 (256)
.+++|||+.|-||.+++.++.. ++ +|++||+|..+++.|++|+..|+++. .++++|+++.+.... ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 4899999999999999988774 44 89999999999999999999999864 899999999987543 358
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g 190 (256)
||+||++||=+..+.... ......+..++..+.++|+|||+++++++...... .+...+...+
T Consensus 291 fDlIilDPPsF~r~k~~~------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 291 FDLIILDPPSFARSKKQE------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred ccEEEECCcccccCcccc------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 999999999876555331 11234578899999999999999999887655333 2334444455
Q ss_pred CcEEEEEecCCC
Q 025180 191 YAARIVVQRSTE 202 (256)
Q Consensus 191 ~~~~~~~~~~~~ 202 (256)
.....+......
T Consensus 359 ~~~~~~~~~~~~ 370 (393)
T COG1092 359 RRAQEIEGEGQP 370 (393)
T ss_pred CcEEEeeccCCC
Confidence 555554433333
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=122.12 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=108.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.++ ++++... ++.+++.+.+.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 262 ~~~~~~~F~Q~N~~~~~~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~ 332 (431)
T TIGR00479 262 FSLSARDFFQVNSGQNEKLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ 332 (431)
T ss_pred EEECCCceeecCHHHHHHHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH
Confidence 445555 4555544 6667777766653 245689999999999999998875 2389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.+... ...+||+|++|||.... ...+++.+.+ ++|
T Consensus 333 n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-----------------------~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 333 NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-----------------------AAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-----------------------CHHHHHHHHh-cCC
Confidence 999998865 99999998765432 23579999999996310 1344555443 789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++.+.+ ...-.+.+.+.||....+..
T Consensus 389 ~~ivyvsc~p~t-lard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 389 ERIVYVSCNPAT-LARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CEEEEEcCCHHH-HHHHHHHHHHCCeeEEEEEE
Confidence 988877543332 33334555667887766554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=119.62 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=104.4
Q ss_pred CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 16 EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 16 ~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
+++++... ++.+++++.+.+. ..+.+|||++||+|.+++.++... ..|+|+|+++.+++.|++|+..++
T Consensus 183 sF~Q~N~~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~ 252 (362)
T PRK05031 183 SFTQPNAAVNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANG 252 (362)
T ss_pred CeeccCHHHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhC
Confidence 37777766 7888888877653 123579999999999999888752 389999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhc--------------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025180 95 VHA-DLINTDIASGLEKRL--------------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~--------------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++ +++.+|+.+.+.... ..+||+|+.|||+.- ....+++.+
T Consensus 253 ~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G-----------------------~~~~~l~~l 309 (362)
T PRK05031 253 IDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG-----------------------LDDETLKLV 309 (362)
T ss_pred CCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC-----------------------CcHHHHHHH
Confidence 865 899999988754321 125899999999621 023445554
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.+ +++++|+++.+.+...++.... + ||....+.+
T Consensus 310 ~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~ 343 (362)
T PRK05031 310 QA---YERILYISCNPETLCENLETLS-Q-THKVERFAL 343 (362)
T ss_pred Hc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEE
Confidence 43 6788888665544444444433 3 888766553
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-13 Score=110.67 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..++..+ .+.++++|+|+++.+++.++++.........+...|+
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 5 RRYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRV---GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc
Confidence 334455555543 2577899999999999988888763 2567999999999999999988433333347888887
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+. ++..++||+|+++..+.+..+ ...+++.+.++|+|||.+++..+
T Consensus 79 ~~~--~~~~~~~D~v~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 79 DGL--PFPDGSFDAVRSDRVLQHLED---------------------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ccC--CCCCCCceEEEEechhhccCC---------------------HHHHHHHHHHHhcCCcEEEEEec
Confidence 654 233578999999755543322 46789999999999999998664
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-14 Score=111.29 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=81.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.++||+|||.|..++.+|+. |..|+++|+|+.+++.+++.+...+++.+....|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc---cCCcCEEEE
Confidence 6789999999999999999987 6799999999999999999888888888899999887643 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.+...... ....+++.+...++|||+.++++
T Consensus 101 t~v~~fL~~~-------------------~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRE-------------------LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GG-------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHH-------------------HHHHHHHHHHhhcCCcEEEEEEE
Confidence 5444332221 26788999999999999988855
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=108.63 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=113.4
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|+..|+.-+..++-+++.+|||+|||+|.++..++..+. +...|+++|+++.+.+.+.+..... .
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG---~~G~VyAVD~s~r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVG---PEGVVYAVEFSHRSGRDLTNMAKKR-P 181 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-C
Confidence 4777766 788888887777766667889999999999999999998863 3458999999998665444433221 2
Q ss_pred cceEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 96 HADLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..++..|+.... .....++||+|+++... ++ ....++.++.++|||||.+++...
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pd--------------------q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PD--------------------QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeCCC---cc--------------------hHHHHHHHHHHhccCCCEEEEEEe
Confidence 2377788876432 11123579999997531 11 134556788999999999998433
Q ss_pred CCC-----CHHHH----HHHHHHcCCcEEEEEe-cCCCCccEEEEEEEe
Q 025180 175 TAN-----DPSQI----CLQMMEKGYAARIVVQ-RSTEEENLHIIKFWR 213 (256)
Q Consensus 175 ~~~-----~~~~~----~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~ 213 (256)
... ..+++ .+++++.+|+...... ......+..++-..+
T Consensus 239 a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 239 ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 211 12333 4778888998765443 334445545544333
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=108.31 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CC-Ccc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AG-LVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~-~fD 117 (256)
.+.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|+..++... +++++|+.+.+.... .. .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----GA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----CC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999988876 32 389999999999999999999998753 899999977654322 22 489
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~ 173 (256)
+|+.+|||.... ...++..+ ..+|+++|++++-+
T Consensus 124 vv~~DPPy~~~~----------------------~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNGA----------------------LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCCCc----------------------HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999999995311 23334433 35789999888744
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=110.92 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=100.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.....+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++++ .++++|+...+.... ++++|.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchhe
Confidence 34459999999999999999888 899999999999999999999999999887 999999988776554 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|..+.| ++-.+.+....++. ...++..+.++|+|||.+.+.+.......+..+.+...
T Consensus 92 i~i~FP-----DPWpK~rH~krRl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 92 IYINFP-----DPWPKKRHHKRRLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp EEEES----------SGGGGGGSTT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCCcccchhhhhcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 999765 11112222233332 47889999999999999999887666667777777774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=109.75 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhccc--CCCceEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEcchhhchhhhcC
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQE--VPGVQYIATDINPYAVEVTRKTLEAHNVHA----DLINTDIASGLEKRLA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~--~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----~~~~~d~~~~~~~~~~ 113 (256)
+.++.++||++||||.+++-+...+... ..+.+|+..|+||+|++.++++..+.++.. .++.+|+++. ++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L--pFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL--PFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--CCCC
Confidence 4677999999999999998888876432 123689999999999999999987766543 7999999887 4778
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+||..+.-.-.-+.. ..++.+++++++|||||+++....+....+.+...+..+.|++
T Consensus 176 ~s~D~yTiafGIRN~t---------------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT---------------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcceeEEEecceecCC---------------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999998843222111 1678999999999999999987765543334444444444444
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=112.68 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..++..+++.+.......+.+|||+|||+|.++..++.. ++...++++|+++.+++.++++.. ....++.+|+
T Consensus 17 ~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~ 89 (240)
T TIGR02072 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecch
Confidence 344444544443322234589999999999998888776 567789999999999998887654 1347888898
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
.+.. +.+++||+|+++..+++..+ ...++..+.++|+|||++++..+......
T Consensus 90 ~~~~--~~~~~fD~vi~~~~l~~~~~---------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~ 142 (240)
T TIGR02072 90 EKLP--LEDSSFDLIVSNLALQWCDD---------------------LSQALSELARVLKPGGLLAFSTFGPGTLH 142 (240)
T ss_pred hhCC--CCCCceeEEEEhhhhhhccC---------------------HHHHHHHHHHHcCCCcEEEEEeCCccCHH
Confidence 7653 33578999999866543322 46789999999999999999775544433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=112.46 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
.-.++..+++.+. ..++.+|||+|||+|.++..+++.++ ++++|+++|+++++++.+++++...+... +++++
T Consensus 61 ~p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 61 AIHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred cHHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 3455566666553 25789999999999999988887643 35699999999999999999999888764 99999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|......+ .+.||+|+++-.. ..+...+.+.|||||++++..
T Consensus 135 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEE--NAPYDRIYVTAAG---------------------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCc--CCCcCEEEECCCc---------------------------ccchHHHHHhhCCCcEEEEEE
Confidence 98765432 4789999985321 223445667899999998843
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=110.80 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=106.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|.|+|+|.++..++..+ +|.++|+.+|+.++.++.|++|+...++.+ .+..+|+.+...+ ..||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~v---g~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAV---GPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---EDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhh---CCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---cccCE
Confidence 589999999999999999998766 466799999999999999999999988765 7777888877544 49999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+.+.|= ...+++.+.+.|||||.+++..|..++.......+++.||....
T Consensus 167 v~LDmp~--------------------------PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 167 VFLDLPD--------------------------PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEEcCCC--------------------------hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 9998761 35889999999999999999999888888899999999887543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=116.11 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=75.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN- 94 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~- 94 (256)
-.+.++++.+..++.++..+......++.+|||+|||+|.+++.+++. +..|+|+|+|+.|++.++++....+
T Consensus 118 ~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~ 191 (315)
T PLN02585 118 VQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALA 191 (315)
T ss_pred eeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhccc
Confidence 356778877777777777664211235789999999999998877764 4689999999999999999987642
Q ss_pred -----CcceEEEcchhhchhhhcCCCccEEEECCCCCCC
Q 025180 95 -----VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 95 -----~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
....+...|+.+. +++||+|+|.-.+.+.
T Consensus 192 ~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 192 ALPPEVLPKFEANDLESL-----SGKYDTVTCLDVLIHY 225 (315)
T ss_pred ccccccceEEEEcchhhc-----CCCcCEEEEcCEEEec
Confidence 1236777886543 4789999997665443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-13 Score=114.09 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=96.8
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhh
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIAS 106 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~ 106 (256)
+.+++.+. ..++++|||+|||+|.++..++.. +++ .|+|+|+++.++..++...... ..+..++.+|+.+
T Consensus 112 ~~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~----g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGA----GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhhC---CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 44444443 246799999999999998877765 443 6999999999987554432222 2234788888876
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---C-------
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---A------- 176 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~------- 176 (256)
.. . +++||+|+|.-..++..+ ...+++++++.|+|||.+++.+.. .
T Consensus 184 lp--~-~~~FD~V~s~~vl~H~~d---------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 184 LP--A-LKAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred CC--C-cCCcCEEEECChhhccCC---------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 62 2 578999999655443322 467899999999999999875311 0
Q ss_pred -------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 -------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 -------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++..++++.||....+..
T Consensus 240 ~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 240 GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 1235678899999998766553
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=108.10 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=83.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+|||+|||+|.++..++..+ + ..+++++|+++.+++.+++++..++.. ..++.+|+.+.. ...++||
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 123 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAV----GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFD 123 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CCCCCcc
Confidence 357899999999999988887763 3 579999999999999999998765443 378888887653 2357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+++.-+.+.++ ...+++.+.++|+|||+++++..
T Consensus 124 ~I~~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPD---------------------IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCC---------------------HHHHHHHHHHhccCCcEEEEEEe
Confidence 9998644332221 56789999999999999988653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-15 Score=107.36 Aligned_cols=98 Identities=22% Similarity=0.422 Sum_probs=62.4
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
||+|||+|.++..+... .+..+++|+|+|+.|++.+++++....... .....+..+.......++||+|++.-.+
T Consensus 1 LdiGcG~G~~~~~l~~~----~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE----LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH----C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999988877777 578899999999999998988888766433 3344343333222223699999998776
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025180 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
++..+ ...+++.+.++|+|||++
T Consensus 77 ~~l~~---------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLED---------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S----------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhh---------------------HHHHHHHHHHHcCCCCCC
Confidence 65422 678999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=111.63 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=102.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc-hhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG-LEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~-~~~~~~~~fD 117 (256)
.||.+|||.|+|+|.++..++..+ .|.+.|+.+|..++.++.|++|+..+++.. .+.+.|+.+. .....+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v---~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAV---GPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHH---TTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHh---CCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 699999999999999999999887 467799999999999999999999999864 8999998643 2222246799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
.|+.+.|- ....+..+.+.| ++||+++...|...+.......+++.||..+.+
T Consensus 116 avfLDlp~--------------------------Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFLDLPD--------------------------PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEEESSS--------------------------GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeCCC--------------------------HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 99998772 235688888999 999999998888888888899999999876544
Q ss_pred E
Q 025180 197 V 197 (256)
Q Consensus 197 ~ 197 (256)
.
T Consensus 170 ~ 170 (247)
T PF08704_consen 170 V 170 (247)
T ss_dssp E
T ss_pred E
Confidence 3
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-13 Score=111.62 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=87.8
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-++|.+|||+|||.|.+++.+|+. + +++|+|+++|+++.+.+++.+...|+.. ++...|..++ .+.||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~----y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-----~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEE----Y-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-----EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHH----c-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-----ccccc
Confidence 379999999999999999888887 4 7899999999999999999999999873 8888888776 34599
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-|++---|-+. + .+.++.++..+.++|+|||++++-+.
T Consensus 140 rIvSvgmfEhv---------------g----~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 140 RIVSVGMFEHV---------------G----KENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eeeehhhHHHh---------------C----cccHHHHHHHHHhhcCCCceEEEEEe
Confidence 99994333221 1 12378999999999999999998554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-13 Score=110.47 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.++..++.. .|+.+++++|+++++++.|++++...+. ..+++.+|+.+.+.. .+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCE
Confidence 35689999999999988777766 7888999999999999999999865543 238899999887654 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHcCCc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~g~~ 192 (256)
|++|. |.....+ .......+++.+.+.|+|||++++...... ......+.+++. |.
T Consensus 140 I~~D~-~~~~~~~----------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~ 196 (262)
T PRK04457 140 ILVDG-FDGEGII----------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FE 196 (262)
T ss_pred EEEeC-CCCCCCc----------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cC
Confidence 99973 2111000 001136889999999999999998543222 223344455443 44
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-14 Score=111.26 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=87.6
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCcc
Q 025180 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
++.....+|.|+|||+|..+-.+++. +|++.|+|+|.|++|++.|++.. .+.+|..+|+.+..++ ..+|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~---~~~d 94 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPE---QPTD 94 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCC---Cccc
Confidence 44457899999999999987555555 99999999999999999997653 3459999999988654 6899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++++|-.+...++ ...++..+...|.|||++.+-++..
T Consensus 95 llfaNAvlqWlpd---------------------H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPD---------------------HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccc---------------------cHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999987766555 3578889999999999999976644
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=110.57 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..+++++..+. ++++++++|+++++++.|++|++.+++.. +++.+|+.+.+.... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3678999999999999888887643 35699999999999999999999999864 899999988765431 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+++.+ ...+..+++.+.++|+|||.+++
T Consensus 144 ~fD~VfiDa~------------------------k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDAD------------------------KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999743 11256788999999999999886
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=115.91 Aligned_cols=145 Identities=18% Similarity=0.116 Sum_probs=97.5
Q ss_pred ccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025180 6 AQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
+.+..+.-.|+.|.-|.+...+-++..+....+ .++.+|||+|||+|..+..++..+.+ +.+++++|+|++|++.
T Consensus 29 ~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 29 ELFEQICELPEYYPTRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKE 103 (301)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHH
Confidence 334455677888876666655555443332222 35689999999999999888877431 4689999999999999
Q ss_pred HHHHHHHc--CCcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 86 TRKTLEAH--NVHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 86 a~~~~~~~--~~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+++++... +++..++++|+.+...-... ....++++...+++.+.. ....+++.++
T Consensus 104 a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~-------------------e~~~~L~~i~ 164 (301)
T TIGR03438 104 SAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE-------------------EAVAFLRRIR 164 (301)
T ss_pred HHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHH-------------------HHHHHHHHHH
Confidence 99987653 34447789998764321111 123344444444433322 2568999999
Q ss_pred hccccCeEEEEEEe
Q 025180 161 KLLSKRGWLYLVTL 174 (256)
Q Consensus 161 ~~LkpgG~l~~~~~ 174 (256)
+.|+|||.+++-..
T Consensus 165 ~~L~pgG~~lig~d 178 (301)
T TIGR03438 165 QLLGPGGGLLIGVD 178 (301)
T ss_pred HhcCCCCEEEEecc
Confidence 99999999997543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=105.08 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++. .+. ++++++|+++.+++.++++.. .....+++.+|+.+.. +..++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~----~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKS----APDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHh----cCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEE
Confidence 46899999999999998887776 343 689999999999999998875 2223478888987753 234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++.+.+.|+|||+++++..
T Consensus 111 ~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTD---------------------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCccc---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 98654432221 56789999999999999998654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=108.53 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCccccCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+.|.+|..++.+....++.+..+. ..++.+|||+|||+|.++..++.. .++.+++|+|+|+++++.|+++..
T Consensus 14 g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~----~~~~~v~giDiS~~~l~~A~~~~~- 88 (204)
T TIGR03587 14 GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRL----LPFKHIYGVEINEYAVEKAKAYLP- 88 (204)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHhhCC-
Confidence 4457888765544444433332111 135689999999999998877765 456799999999999999988642
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
...+.++|+.+ ++.+++||+|+++-.+.+.+.. ....+++++.+++ ++.+++.
T Consensus 89 ---~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl~p~-------------------~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 89 ---NINIIQGSLFD---PFKDNFFDLVLTKGVLIHINPD-------------------NLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---CCcEEEeeccC---CCCCCCEEEEEECChhhhCCHH-------------------HHHHHHHHHHhhc--CcEEEEE
Confidence 23777888776 3346799999998766544321 2567888888876 4555554
Q ss_pred E
Q 025180 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 142 e 142 (204)
T TIGR03587 142 E 142 (204)
T ss_pred E
Confidence 4
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=111.44 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|+.+++++|. +.+++.+++++...++.. +++.+|+.+... ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~----~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY----PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC----CCCCE
Confidence 46689999999999998888887 88899999997 789999999999888754 789999875421 23699
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-..+..++ +....+++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~-------------------~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCCh-------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 876432222111 1246789999999999999999764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=114.64 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-------eEEEcchhhchhhhcCCC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 115 (256)
+.+|||+|||+|.++..++++ +++|+|||+++.|++.|++......... ++.+.|+... .+.
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-----TGK 158 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-----ccc
Confidence 478999999999999999987 5699999999999999999855444322 3444444443 356
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
||+|+|--.+.|. .....++..+.++|||||++++.+....
T Consensus 159 fDaVvcsevleHV---------------------~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV---------------------KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cceeeeHHHHHHH---------------------hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999994332221 1267889999999999999999775433
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=104.88 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhch------hhhcC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGL------EKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~~~ 113 (256)
+++.+|||+|||+|.++..+++... +...|+|+|+++ + +.. +..++++|+.+.. .++..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999988887642 456999999998 1 111 2388999988742 12345
Q ss_pred CCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 114 GLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 114 ~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
++||+|++++ |++. .... .... ........+++.+.++|+|||++++.........++...+.. .|.
T Consensus 116 ~~~D~V~S~~~~~~~-g~~~-----~d~~-----~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~ 183 (209)
T PRK11188 116 SKVQVVMSDMAPNMS-GTPA-----VDIP-----RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFT 183 (209)
T ss_pred CCCCEEecCCCCccC-CChH-----HHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-Cce
Confidence 7899999987 4432 1110 0000 001123578999999999999999976655555566555544 444
Q ss_pred EEEE
Q 025180 193 ARIV 196 (256)
Q Consensus 193 ~~~~ 196 (256)
...+
T Consensus 184 ~v~~ 187 (209)
T PRK11188 184 KVKV 187 (209)
T ss_pred EEEE
Confidence 4333
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=107.91 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +..++|+|+++++++.|++++...+. ...+.++|+.+.. ++||+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ 122 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDI 122 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCE
Confidence 46899999999999998877653 45899999999999999999887765 3388888987652 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|++.-.+.+.+. .....++..+.+++++++++.+
T Consensus 123 ii~~~~l~~~~~-------------------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPA-------------------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCH-------------------HHHHHHHHHHHHHhCCCEEEEE
Confidence 998544322211 1246778888888887666554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-13 Score=102.31 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++. ........+.... ...+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP--PFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH---------TTSEEEEEECHTH--HCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh--hccccchhhHh
Confidence 57899999999999987766553 3499999999999987 1112222222222 22357999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|+-.+.+.++ ...+++.+.++|||||++++..+..
T Consensus 84 ~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLPD---------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSSH---------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhccc---------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9765544332 5789999999999999999988754
|
... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=115.86 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++.. +...++...|..+. +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~-----~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH-----YGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-----CCCCCEEE
Confidence 57899999999999998877765 25699999999999999999874 34457777776543 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++.+.++|||||++++...
T Consensus 234 s~~~~ehvg~-------------------~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 234 SVGMFEHVGP-------------------KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCchhhCCh-------------------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9765543321 1257889999999999999998654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=109.12 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh-cCCCcc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR-LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~-~~~~fD 117 (256)
.+++|||+.|-||.+++.++.. ....|+++|.|..+++.+++|+..|+++. +++..|+.+.+... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 6899999999999999887664 22379999999999999999999999763 89999999876542 246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-HHHHHHHHHc
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-SQICLQMMEK 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~ 189 (256)
+||++||=+..... .. ...+.+++..+.++|+|||.+++++++.... +.+.+.+.+.
T Consensus 198 ~IIlDPPsF~k~~~-----~~----------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 198 LIILDPPSFAKSKF-----DL----------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp EEEE--SSEESSTC-----EH----------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred EEEECCCCCCCCHH-----HH----------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999996642211 11 1246788999999999999999887765533 3455555444
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=106.32 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
...++.+++..+. ..++.+|||+|||+|.++..++... ..++++|+++++++.+++++..+++.. ++..+
T Consensus 63 ~p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~ 133 (212)
T PRK00312 63 QPYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG 133 (212)
T ss_pred cHHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC
Confidence 3445555655543 2578999999999999987766652 279999999999999999999888764 88999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|..+.... .++||+|+++.+. ..+...+.+.|+|||++++..
T Consensus 134 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 134 DGWKGWPA--YAPFDRILVTAAA---------------------------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CcccCCCc--CCCcCEEEEccCc---------------------------hhhhHHHHHhcCCCcEEEEEE
Confidence 98664332 3689999997542 233456678999999999854
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-13 Score=112.59 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.++..++..+... ..+.++|+|+|+.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 356889999999999988887764321 1357999999999999997653 1347888887764 34467999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+... ...+.++.++|||||+++++.+......++...+
T Consensus 157 ~~~~----------------------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 157 RIYA----------------------------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EecC----------------------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 8421 1225678899999999999887665544544443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=123.13 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=109.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc----CCCceEEEEeCCHHHHHHHHHHH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE----VPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~----~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
..+|+|...++.+++++.+....-....+.+|||+|||+|.++++++..+... .-+..++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45899987788888777654321001146799999999999999998876421 11368999999999999999998
Q ss_pred HHcC-CcceEEEcchhhchh---hhcCCCccEEEECCCCCCCCCcccccc---------c-------------------c
Q 025180 91 EAHN-VHADLINTDIASGLE---KRLAGLVDVMVVNPPYVPTPEDEVGRE---------G-------------------I 138 (256)
Q Consensus 91 ~~~~-~~~~~~~~d~~~~~~---~~~~~~fD~Ii~npP~~~~~~~~~~~~---------~-------------------~ 138 (256)
...+ ....+.+.|...... ....+.||+||+||||........... . +
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDP 163 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhh
Confidence 7765 223556555443211 111357999999999987543211000 0 0
Q ss_pred hhhhcCCCCcHHHHHHH-HHHHhhccccCeEEEEEEeCC----CCHHHHHHHHHHc
Q 025180 139 ASAWAGGENGRAVIDKI-LPSADKLLSKRGWLYLVTLTA----NDPSQICLQMMEK 189 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~ 189 (256)
...+ .|.. ..+..+ ++.+.++|++||++.++.|.. .....+++.+.+.
T Consensus 164 ~~~~-~g~~--~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 164 IRKY-AGVG--TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hccc-CCcc--cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 0000 1111 123444 467899999999999988753 2334566666544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=102.48 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred ccC-CccccCCc--hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 13 SHP-EVYEPCDD--SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 13 ~~~-~~~~p~~~--~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+ ..++|+++ .+.+.+++.+ ++ .+.++||+.+|+|.++++++.. + ...++.+|.+..++..+++
T Consensus 16 ~p~~~~~RPT~drVREalFNil~~~~i------~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 16 TPDGPGTRPTTDRVREALFNILAPDEI------EGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKE 84 (187)
T ss_pred CCCCCCcCCCchHHHHHHHHhcccccc------CCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHH
Confidence 444 37889888 7777777776 34 7899999999999999998876 3 3489999999999999999
Q ss_pred HHHHcCCcc--eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH--Hhhcc
Q 025180 89 TLEAHNVHA--DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS--ADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~--~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~L 163 (256)
|++..+... .++..|....+..... +.||+|+.+|||...-. .....+.. -...|
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~--------------------~~~~~~~~~~~~~~L 144 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL--------------------DKELALLLLEENGWL 144 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh--------------------hHHHHHHHHHhcCCc
Confidence 999888543 8888898866544322 34999999999962110 01122222 35679
Q ss_pred ccCeEEEEEEe
Q 025180 164 SKRGWLYLVTL 174 (256)
Q Consensus 164 kpgG~l~~~~~ 174 (256)
+|+|.+++-+.
T Consensus 145 ~~~~~iv~E~~ 155 (187)
T COG0742 145 KPGALIVVEHD 155 (187)
T ss_pred CCCcEEEEEeC
Confidence 99999999543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=108.70 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++..+.+.+++++|+|+|+++.|++.|+++....++ ++...+..... ..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~l~--~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVSDELV--AEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--eEEEEeccccc--ccCCCccEEE
Confidence 4668999999999999888887665546677999999999999999887654443 34444433221 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++..+++.++.+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~-------------------~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAE-------------------VVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHH-------------------HHHHHHHHHHhcC
Confidence 998876655432 3567888888776
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=107.59 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=87.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
++++|||+|||+|..++.++..+. ++..|+++|.++++++.|++|++..|+.. +++.+|+.+.++... .++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~---~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLP---ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 679999999999999999998753 35689999999999999999999999864 999999998876531 368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+.+ ...+..+++.+.++|+|||.+++
T Consensus 195 FD~VFIDa~------------------------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 195 YDFAFVDAD------------------------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCEEEECCC------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999754 12367889999999999999887
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=111.08 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=100.8
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
++++... .+.+++++.+.+. ..+.+|||+|||+|.+++.++.. . ..|+|+|+++++++.|++|+..+++
T Consensus 175 F~Q~N~~~~~~l~~~v~~~~~----~~~~~vlDl~~G~G~~sl~la~~----~--~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 175 FTQPNAAVNIKMLEWACEVTQ----GSKGDLLELYCGNGNFSLALAQN----F--RRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred cccCCHHHHHHHHHHHHHHhh----cCCCcEEEEeccccHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 5666655 6677777777653 12357999999999999988876 2 2899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhh-----c---C------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 96 HA-DLINTDIASGLEKR-----L---A------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~-----~---~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
.+ +++.+|+.+..... . . ..||+|+.|||.. . . ...+++.+.
T Consensus 245 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~---G------------------~--~~~~l~~l~ 301 (353)
T TIGR02143 245 DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA---G------------------L--DPDTCKLVQ 301 (353)
T ss_pred CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCC---C------------------C--cHHHHHHHH
Confidence 65 89999998876431 0 1 2389999999942 0 0 234445443
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++|+++.+.+...++..+. .+|....+.
T Consensus 302 ---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 302 ---AYERILYISCNPETLKANLEQLS--ETHRVERFA 333 (353)
T ss_pred ---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEE
Confidence 37888888765555555655544 237665554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-12 Score=103.08 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=83.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ++.++++|+++.+++.+++++...+...+++..|+.+.... ..++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-cCCCccEEE
Confidence 46889999999999988766654 35899999999999999999887776567788887665322 347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...+++.+.++|+|||++++..+
T Consensus 120 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPD---------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCC---------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 9655443322 45789999999999999998654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-12 Score=119.24 Aligned_cols=139 Identities=20% Similarity=0.208 Sum_probs=97.6
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC------------------------------
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP------------------------------ 69 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~------------------------------ 69 (256)
|-+..+.++..++..-. +. .++..++|++||+|+++++++.+.....|
T Consensus 170 ~Apl~etlAaa~l~~a~-w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 170 EAPLKENLAAAILLRSG-WP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCCcHHHHHHHHHHcC-CC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 45557888888876532 21 35789999999999999999986432111
Q ss_pred --------CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccch
Q 025180 70 --------GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 70 --------~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
...++|+|+++.+++.|++|+..+|+.. .+.++|+.+...+...++||+|++||||......+.
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~------ 321 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP------ 321 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH------
Confidence 2369999999999999999999999864 788999988644433357999999999986433210
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.-...+.. +....+...+|+.+++++.
T Consensus 322 -------~l~~lY~~-lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 322 -------ALIALYSQ-LGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -------HHHHHHHH-HHHHHHHhCCCCeEEEEeC
Confidence 00112333 3333344459999988764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-12 Score=107.35 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C----cceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V----HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~----~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||++|||+|..+.++++. .+..+|+++|+++++++.|++.+.... . ..+++.+|+...+.. .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCC
Confidence 45789999999999987666543 234589999999999999999886532 1 238999999887654 457
Q ss_pred CccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++. |+.... ......+++.+.+.|+|||++++..
T Consensus 150 ~yDvIi~D~~dp~~~~~-------------------~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAE-------------------GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCchh-------------------hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 899999974 331100 1124688899999999999998743
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=105.02 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=71.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||||.++..++.. . +.+|+|+|+|++|++.|++.. ..+++|+.+. ++.+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEe
Confidence 4789999999999988777765 3 458999999999999987641 4567887765 455789999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+....+.++ .+.+++++.++|||.
T Consensus 117 ~~~l~~~~d---------------------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASDN---------------------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccCC---------------------HHHHHHHHHHHhcCc
Confidence 866543332 578899999999995
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=106.22 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. -+++.+|||+|||+|..+..++.+++ +...|+++|.++..++.|++++...+..+ .++.+|
T Consensus 58 P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg---~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVG---PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHS---TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred HHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcC---ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 455666677665 26899999999999999988888764 34589999999999999999999999876 999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.....+. .+.||.|+++... ..+-..+.+.|++||++++..
T Consensus 132 g~~g~~~--~apfD~I~v~~a~---------------------------~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAV---------------------------PEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBB---------------------------SS--HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeecc---------------------------chHHHHHHHhcCCCcEEEEEE
Confidence 8877554 4789999996432 122344556799999999854
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=111.76 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccC-----CCceEEEEeCCHHHHHHHHHHHHH----c
Q 025180 24 SFALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEV-----PGVQYIATDINPYAVEVTRKTLEA----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~-----~~~~v~giD~~~~~i~~a~~~~~~----~ 93 (256)
...+.+.+++.+.. ....++.+|||+|||||.-+..++..+.+.. ++..|+|+|+|+.|++.|++.+.. .
T Consensus 80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~ 159 (264)
T smart00138 80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE 159 (264)
T ss_pred HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence 45566666655421 1123568999999999975444443332222 257899999999999999985410 0
Q ss_pred CC------------------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025180 94 NV------------------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 ~~------------------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
++ ...+.++|+.+... ..++||+|+|.-.+++.+.
T Consensus 160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~------------------- 218 (264)
T smart00138 160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDE------------------- 218 (264)
T ss_pred cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCH-------------------
Confidence 11 12677888877532 3578999999543332221
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025180 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....++..+++.|+|||++++
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEE
Confidence 1256899999999999999998
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=115.50 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=118.9
Q ss_pred eeeeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 9 RLVSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 9 ~~~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
-.+.+.+ ++|++.+. .+.|++++++.+.. .++.+|||+-||.|.+++.+|+. ..+|+|+|+++++++.|
T Consensus 261 ~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A 331 (432)
T COG2265 261 VSFQISPRSFFQVNPAVAEKLYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAA 331 (432)
T ss_pred eEEEeCCCCceecCHHHHHHHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHH
Confidence 3455777 79999988 88899998888753 46789999999999999998865 34899999999999999
Q ss_pred HHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 87 RKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 87 ~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++|++.|++.+ .+..++..+...... ...+|.|+.|||= .|. -..+++.+.+ ++
T Consensus 332 ~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR---------------------~G~--~~~~lk~l~~-~~ 387 (432)
T COG2265 332 QENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR---------------------AGA--DREVLKQLAK-LK 387 (432)
T ss_pred HHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC---------------------CCC--CHHHHHHHHh-cC
Confidence 99999999986 899999998876542 3578999999992 111 1355666654 78
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|..++++++.+.+...+ .+.+.+.|+.+..+.
T Consensus 388 p~~IvYVSCNP~TlaRD-l~~L~~~gy~i~~v~ 419 (432)
T COG2265 388 PKRIVYVSCNPATLARD-LAILASTGYEIERVQ 419 (432)
T ss_pred CCcEEEEeCCHHHHHHH-HHHHHhCCeEEEEEE
Confidence 99999997665554444 445556777655444
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=107.21 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcc--eEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.++++|+|+|||.|-++ +.++. +.+|+++++++|+++++++.|++.+.. .++.. +|+.+|+.+.... .+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa---~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAK---HHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHH---hcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCc
Confidence 37899999999977443 22222 226888999999999999999999964 56643 9999999885322 3689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|++. ..+..... ...++++.+.+.|+|||.+++-.
T Consensus 197 DlVF~~-ALi~~dk~-------------------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKE-------------------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccc-------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence 999996 33222111 16799999999999999999844
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=105.88 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----------- 92 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----------- 92 (256)
...+++++.... ..++.+|||+|||.|..++.++.. +.+|+|+|+|+.+++.+......
T Consensus 20 ~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~ 89 (213)
T TIGR03840 20 NPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT 89 (213)
T ss_pred CHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce
Confidence 455666544321 136689999999999998888875 67999999999999976332110
Q ss_pred --cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 93 --HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 --~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+...++.++|+.+.... ..+.||.|+..-.+.+.+. .....+++.+.++|||||+++
T Consensus 90 ~~~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~-------------------~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 90 RYRAGNIEIFCGDFFALTAA-DLGPVDAVYDRAALIALPE-------------------EMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred eeecCceEEEEccCCCCCcc-cCCCcCEEEechhhccCCH-------------------HHHHHHHHHHHHHcCCCCeEE
Confidence 012347889999876432 1357999987544443322 235788999999999999876
Q ss_pred EEEe
Q 025180 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+++.
T Consensus 150 l~~~ 153 (213)
T TIGR03840 150 LITL 153 (213)
T ss_pred EEEE
Confidence 6543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=102.17 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eE
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~ 99 (256)
+++..+...+... ..+++|||+|++.|..++.++..+.. +++++++|.++++++.|++|+++.|+.. .+
T Consensus 45 ~e~g~~L~~L~~~------~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 45 PETGALLRLLARL------SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred hhHHHHHHHHHHh------cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4455555555554 37899999999999999999998532 6699999999999999999999999876 56
Q ss_pred EE-cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 100 IN-TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 100 ~~-~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. +|..+.+.....++||+|+.+- +...+..+++.+.++|+|||.+++
T Consensus 116 ~~~gdal~~l~~~~~~~fDliFIDa------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 116 LLGGDALDVLSRLLDGSFDLVFIDA------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EecCcHHHHHHhccCCCccEEEEeC------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 67 5888887664568999999852 112367899999999999999997
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=101.64 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=77.5
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchh
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~ 105 (256)
.+.+++.+......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ...+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 344444443211246789999999999998877764 34799999999999999999887766 3378888843
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
. ..++||+|++.-.+.+.+.+ ....++..+.+.+++++.+.
T Consensus 123 ~-----~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 S-----LLGRFDTVVCLDVLIHYPQE-------------------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred h-----ccCCcCEEEEcchhhcCCHH-------------------HHHHHHHHHHhhcCCeEEEE
Confidence 2 24689999997655433221 14566777777665444433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=103.83 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=85.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+..++. ..+.+.+ +++.+|+|+.||.|.+++.+++. .....|+|+|++|.+++.+++|+
T Consensus 77 ~D~~kvyfs~rl~~Er--~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 77 VDLSKVYFSPRLSTER--RRIANLV-----KPGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp EETTTS---GGGHHHH--HHHHTC-------TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHHHH
T ss_pred EccceEEEccccHHHH--HHHHhcC-----CcceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHHHH
Confidence 4555557777755444 3444443 57899999999999999999985 44668999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. .++++|..+... ...+|-|++|.|.. ...++..+..++++||+
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~lp~~-------------------------~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP---EGKFDRVIMNLPES-------------------------SLEFLDAALSLLKEGGI 197 (200)
T ss_dssp HHTT-TTTEEEEES-GGG------TT-EEEEEE--TSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC---ccccCEEEECChHH-------------------------HHHHHHHHHHHhcCCcE
Confidence 9999876 789999988865 47899999998853 34678888899999998
Q ss_pred EEE
Q 025180 169 LYL 171 (256)
Q Consensus 169 l~~ 171 (256)
+.+
T Consensus 198 ihy 200 (200)
T PF02475_consen 198 IHY 200 (200)
T ss_dssp EEE
T ss_pred EEC
Confidence 753
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=101.78 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=86.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|||+|||||..--.+ .+ -|..+|+++|.++.|-+.+.+.+.++.... .++.++..+.. ...++++|.|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccccCCeeeEE
Confidence 356799999999863211 11 367899999999999999999998875433 58899987763 34579999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+........+ ..+.|.+..++|+|||+++++.+...........+
T Consensus 151 ~TlvLCSve~---------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~ 195 (252)
T KOG4300|consen 151 CTLVLCSVED---------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL 195 (252)
T ss_pred EEEEEeccCC---------------------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH
Confidence 9654432222 56889999999999999999987665444333333
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-12 Score=102.52 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=81.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+|||+|||+|.++..+++. +..++++|+++.+++.+++++..++. ..++...|+.+.... .+++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEE
Confidence 4789999999999988776654 24699999999999999999888776 358888888766432 146899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+..+ ...++..+.++|++||.+++...
T Consensus 118 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPD---------------------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCC---------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 9654332221 46789999999999999988654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-12 Score=99.57 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+..++.+. ++..++.-|||||||+|..+-.+. .++...+|+|||+.|++.|.+.- +..+++.+|+
T Consensus 34 ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~------~~Gh~wiGvDiSpsML~~a~~~e----~egdlil~DM 102 (270)
T KOG1541|consen 34 AEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLS------DSGHQWIGVDISPSMLEQAVERE----LEGDLILCDM 102 (270)
T ss_pred HHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheec------cCCceEEeecCCHHHHHHHHHhh----hhcCeeeeec
Confidence 445555666543 333467899999999999653332 24568999999999999998632 1248999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHH
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQI 182 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~ 182 (256)
.+.+ ++.+++||-+|+-.......+.....+.+. ..+..|+..++.+|++|++.++-....+ +.+.+
T Consensus 103 G~Gl-pfrpGtFDg~ISISAvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 103 GEGL-PFRPGTFDGVISISAVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred CCCC-CCCCCccceEEEeeeeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 8765 556899999998433222222222222222 2367889999999999999998554333 23355
Q ss_pred HHHHHHcCCc--EEEEEecCCCCccEE
Q 025180 183 CLQMMEKGYA--ARIVVQRSTEEENLH 207 (256)
Q Consensus 183 ~~~~~~~g~~--~~~~~~~~~~~~~~~ 207 (256)
.....+.||. +.+-++.......++
T Consensus 172 ~~~a~~aGF~GGlvVd~Pes~k~kK~y 198 (270)
T KOG1541|consen 172 MQQAMKAGFGGGLVVDWPESTKNKKYY 198 (270)
T ss_pred HHHHHhhccCCceeeecccccccceeE
Confidence 6666667775 344444433333333
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=114.47 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=70.8
Q ss_pred eeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.| +++++.+. .+.+++++++.+.. .+.+|||+.||+|.+++.++... ..|+|+|+++.+++.|++
T Consensus 167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~----~~~~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 167 FRISPGSFFQVNPEQNEKLYEQALEWLDL----SKGDVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp EEEETTS---SBHHHHHHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHH
T ss_pred EEECCCcCccCcHHHHHHHHHHHHHHhhc----CCCcEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHH
Confidence 34444 48888887 88888888887642 23389999999999999988762 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--------------cCCCccEEEECCC
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKR--------------LAGLVDVMVVNPP 124 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--------------~~~~fD~Ii~npP 124 (256)
|+..|++++ +++.++..+..... ....+|+|+.+||
T Consensus 237 Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 237 NAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 999999987 88887766543211 1236899999999
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-12 Score=104.99 Aligned_cols=182 Identities=16% Similarity=0.255 Sum_probs=85.6
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccC--CCCEEEEecccccHH-HHHHHHHhcccCCCceEEEEeCCH
Q 025180 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEH--HPVLCMEVGCGSGYV-ITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~--~~~~VLDlGcG~G~~-~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
.+++..-++.++.+.|... +.-++-|+.+.+...... ...++||||||..++ ++-.++ ..+|+++|+|+++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-----~~~W~fvaTdID~ 136 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-----LYGWSFVATDIDP 136 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-----HH--EEEEEES-H
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-----hcCCeEEEecCCH
Confidence 4555544788999999887 556667777766542211 257999999999986 222222 2489999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEcc----hhhchhhhcCCCccEEEECCCCCCCCCcccc---cc------------cc
Q 025180 81 YAVEVTRKTLEAH-NVHA--DLINTD----IASGLEKRLAGLVDVMVVNPPYVPTPEDEVG---RE------------GI 138 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~d----~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~---~~------------~~ 138 (256)
.+++.|++|+..| ++.. .++... +...... ..+.||+.+|||||+.+.++... ++ .+
T Consensus 137 ~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p 215 (299)
T PF05971_consen 137 KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPP 215 (299)
T ss_dssp HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-----SS-------------------------
T ss_pred HHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecCCccccChhhhcccccccccccccccccccCc
Confidence 9999999999999 7765 444332 2222221 24689999999999988764221 01 12
Q ss_pred hhhhcCCCC-------cHHHHHHHHHHHhhccccC-eEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 139 ASAWAGGEN-------GRAVIDKILPSADKLLSKR-GWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
...+.|... ...+..+++++...+ +.. .++--..........+.+.+++.+...
T Consensus 216 ~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~ 277 (299)
T PF05971_consen 216 KLNFTGQSNELWCEGGEVAFVKRMIKESLQL-KDQVRWFTSMVGKKSSLKPLKKELKKLGATN 277 (299)
T ss_dssp -------TTTTHHHHTHHHHHHHHHHHHHHH-GGGEEEEEEEESSGGGHHHHHHHHHHTT-SE
T ss_pred cccCCCCcceEEcCCccHHHHHHHHHHHHHh-CCCcEEEeecccCcccHHHHHHHHHhcCCce
Confidence 222222111 122566777776643 332 222222223445678888888887654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=99.69 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++... .+.+++++|+.+...+ +..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEEE
Confidence 46789999999999998887765 358999999999999999987542 1348999999887432 34699999
Q ss_pred ECCCCCC
Q 025180 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||+.
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999963
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-11 Score=108.96 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=107.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.|.....+.+++..++.. ...++.+|||+|+|.|.-+..++..+.. +..|++.|+++..++.+++|+.+.|
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~----~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFA----DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCcEEEECHHHHHHHHHhcc----CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34444454455555544421 1258899999999999999999998752 3589999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEE
Q 025180 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+.+ .+.+.|...... ...+.||.|++++|-.-..- .++.+...+.-. ..-......+|..+.++|||||++
T Consensus 163 ~~nv~v~~~D~~~~~~-~~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 163 VSNVALTHFDGRVFGA-ALPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred CCeEEEEeCchhhhhh-hchhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 876 777888765432 23467999999999653322 122222222110 001124678899999999999999
Q ss_pred EEEEeCCCC
Q 025180 170 YLVTLTAND 178 (256)
Q Consensus 170 ~~~~~~~~~ 178 (256)
+.++++...
T Consensus 239 VYSTCT~~~ 247 (470)
T PRK11933 239 VYSTCTLNR 247 (470)
T ss_pred EEECCCCCH
Confidence 999998663
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=116.74 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=90.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++... ......++++|+.....++.+++||+|+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999888875 2389999999999987654221 1112378889986543344457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
++.++++.++.+ ...+++++.++|||||++++..... .......+.
T Consensus 109 ~~~~l~~l~~~~-------------------~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 109 SNWLLMYLSDKE-------------------VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKV 169 (475)
T ss_pred hhhhHHhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHH
Confidence 998876554322 5788999999999999998854211 123456667
Q ss_pred HHHcCCc
Q 025180 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.++.
T Consensus 170 f~~~~~~ 176 (475)
T PLN02336 170 FKECHTR 176 (475)
T ss_pred HHHheec
Confidence 7776654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=103.86 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=96.9
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCC-CccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAG-LVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~fD~Ii 120 (256)
...+||||||.|.+++.+|+. .|+..++|||+....+..|.+.+.+.++ +..+++.|+...+..+.++ +.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 368999999999999998888 9999999999999999999999999999 5699999999998776655 999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.|.| .| |++.++. +..-+...+++.+.+.|+|||.+.+.+......++
T Consensus 125 i~FP---DP-------WpKkRH~---KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFP---DP-------WPKKRHH---KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECC---CC-------CCCcccc---ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9865 11 1122111 11223678999999999999999997654433333
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=108.14 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=101.5
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----------------------------Cc-
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------GV- 71 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----------------------------~~- 71 (256)
-+.-+.|+..++..-. + .++..++|+-||+|+++|++|.+....-| .+
T Consensus 173 ApLketLAaAil~lag-w--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 173 APLKETLAAAILLLAG-W--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCchHHHHHHHHHHcC-C--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 3446777777766433 2 35579999999999999999988532222 11
Q ss_pred ------eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc
Q 025180 72 ------QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA 143 (256)
Q Consensus 72 ------~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~ 143 (256)
.++|+|+++.+++.|+.|....|+.. .|.++|+.....++ +.+|+|||||||...-..+.
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~---------- 317 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEA---------- 317 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChh----------
Confidence 37799999999999999999999875 99999998876553 78999999999975333210
Q ss_pred CCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 144 GGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
--...+..+.+.+.+.++-.++.++++.
T Consensus 318 ---~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 318 ---LVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred ---hHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 0112467778888899999899888653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-12 Score=101.19 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=84.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
.+++|||+||++|..++.++..+. ++++|+.+|++++..+.|++++...|+.. +++.+|+.+.++... .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred CCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 679999999999999999998753 36799999999999999999999998864 899999998876532 257
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+-. ...+..+++.+.++|+|||.+++
T Consensus 122 fD~VFiDa~------------------------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 122 FDFVFIDAD------------------------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEEEEST------------------------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEccc------------------------ccchhhHHHHHhhhccCCeEEEE
Confidence 999999632 11267888888999999999998
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=106.35 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+...+++.+. ..++.+|||+|||+|.++..+++... ....|+++|+++++++.|++++..++.+. .++++|+
T Consensus 67 ~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~---~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 67 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred HHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 34444555432 24678999999999999988887642 23479999999999999999999888765 8888998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... .++||+|+++.. ...+...+.+.|+|||++++..
T Consensus 141 ~~~~~~--~~~fD~Ii~~~g---------------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 141 YYGVPE--FAPYDVIFVTVG---------------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hhcccc--cCCccEEEECCc---------------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 765433 257999999532 2233455677899999988854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=100.17 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=91.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-----HcCC---cceEEEcchhhchhhhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-----AHNV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-----~~~~---~~~~~~~d~~~~~~~~~ 112 (256)
..+++||++|||+|..+.++.+. .+..+|+++|+++++++.|++... .... ..+++.+|+.+.+.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~----~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY----ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-c
Confidence 35689999999999976555543 344689999999999999996321 1112 238899999987654 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HHHHHHHHH
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~ 188 (256)
.++||+|+++.|-...... .......+++.+.+.|+|||+++....+.... ..+.+.+++
T Consensus 224 ~~~YDVIIvDl~DP~~~~~----------------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~ 287 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELL----------------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH 287 (374)
T ss_pred CCCccEEEEcCCCccccch----------------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence 5689999999753111000 01124678999999999999988754322222 234566677
Q ss_pred cCCcEEEEE
Q 025180 189 KGYAARIVV 197 (256)
Q Consensus 189 ~g~~~~~~~ 197 (256)
.++......
T Consensus 288 af~~v~~y~ 296 (374)
T PRK01581 288 AGLTVKSYH 296 (374)
T ss_pred hCCceEEEE
Confidence 777665443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=100.44 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.++..+++.+. ..++.+|||||||+|..+..+++..+ +|+++|..+...+.|++|+...|..+ .+.++|.
T Consensus 59 ~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 59 HMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC------eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 34455555543 36899999999999999888888732 89999999999999999999999865 9999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....++ .+.||.|+..-- ...+-+.+.+-||+||++++..
T Consensus 130 ~~G~~~--~aPyD~I~Vtaa---------------------------a~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 130 SKGWPE--EAPYDRIIVTAA---------------------------APEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred ccCCCC--CCCcCEEEEeec---------------------------cCCCCHHHHHhcccCCEEEEEE
Confidence 887655 378999998422 1222344556799999999843
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=96.54 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=92.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-.++||+|||+|.++..++..+. .++++|+++.+++.|+++.... -..++++.|+.+..+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd------~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P---~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD------RLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP---EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE------EEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhhC------ceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC---CCCeeEEE
Confidence 4558999999999999888877643 7999999999999999987632 134999999977643 48999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------CCHHHHHHHHHHcCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------NDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~g~ 191 (256)
+.=..+...+ ...+..++..+...|+|||.+++-+... ...+.+...+.+.-.
T Consensus 112 ~SEVlYYL~~------------------~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 112 LSEVLYYLDD------------------AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EES-GGGSSS------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EehHhHcCCC------------------HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 8432222111 2236788999999999999999966321 123455666655433
Q ss_pred cEEEE-EecCCCCccEEEEEEEe
Q 025180 192 AARIV-VQRSTEEENLHIIKFWR 213 (256)
Q Consensus 192 ~~~~~-~~~~~~~~~~~l~~~~~ 213 (256)
++..+ .......+...+..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEEEE-
T ss_pred heeEEEEcCCCCCCceEeeeecC
Confidence 33333 23444556666666655
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=96.79 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=74.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+.. ..++..+|+|++++.+..+.++ |+ .++++|+.+.+..+.+++||.||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~-----~k~v~g~GvEid~~~v~~cv~r----Gv--~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKD-----EKQVDGYGVEIDPDNVAACVAR----GV--SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHc----CC--CEEECCHHHhHhhCCCCCccEEe
Confidence 4789999999999997544433 2478999999999998877654 32 79999999999888899999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++-. .+....--.-+.++|+-|...+++.|++.
T Consensus 81 lsqt------------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 81 LSQT------------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred hHhH------------------------HHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9521 11112222234455777888888776654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=102.65 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------------cceEEEcch
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------------HADLINTDI 104 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------------~~~~~~~d~ 104 (256)
.++.+|||+|||.|..++.++.. +++|+|+|+++.+++.+.. ++++ ..++.++|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc
Confidence 35689999999999998888875 6799999999999997642 2221 237788998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... ....||.|+.---+.+.+. .....++..+.++|+|||++++++
T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~-------------------~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPE-------------------EMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCH-------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 876432 2257999986433332221 236788999999999999755534
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=100.33 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||+|.++..+++. .+..+++++|+++++++.+++++...+ . ..+++.+|..+.+.. .+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCC
Confidence 35679999999999987666554 334589999999999999999875432 1 227788888776543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+.. ......+++.+.+.|+|||++++...
T Consensus 146 yDvIi~D~~~~~~~~~-----------------~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----------------TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred ccEEEEeCCCCCCccc-----------------chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9999998764321110 01246888999999999999998644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=95.55 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 114 (256)
.++.+|||+|||+|.++..++... .+.++|+++|+++.+ .. ....++++|+.+.. .....+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~---~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQV---GGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHh---CCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 478999999999999988777763 234689999999864 11 12367777875531 112346
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
+||+|+++++ +....... ..........++..+.++|+|||++++.........++...++.. |.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~------------~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~ 164 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDID------------HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FE 164 (188)
T ss_pred CccEEEcCCCCCCCCCcccc------------HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hc
Confidence 7999999853 21100000 000011246889999999999999999665555555666666554 44
Q ss_pred EEE
Q 025180 193 ARI 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 165 ~~~ 167 (188)
T TIGR00438 165 KVK 167 (188)
T ss_pred eEE
Confidence 333
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=100.96 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||.|..+.++++. .+-.+|+.+|+++.+++.|++.+... ++ ..+++.+|+...+....+++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 46799999999999987766553 22358999999999999999987643 22 23899999888765433568
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+-...+. .......+++.+.+.|+|||+++..
T Consensus 166 yDvIi~D~~dp~~~~-----------------~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPA-----------------QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCch-----------------hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999999753211110 0112468899999999999999763
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-12 Score=92.81 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=70.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++++++|+|||+|.+.++.+.. ..-.|.|+||+|++++.+++|..+..++.++.++|+.+.... .+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~-----~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~--~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP-----KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK--GGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC-----CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc--CCeEeeEE
Confidence 58999999999999988665542 234899999999999999999999888889999999887443 48899999
Q ss_pred ECCCCCCCCC
Q 025180 121 VNPPYVPTPE 130 (256)
Q Consensus 121 ~npP~~~~~~ 130 (256)
.||||.....
T Consensus 120 iNppFGTk~~ 129 (185)
T KOG3420|consen 120 INPPFGTKKK 129 (185)
T ss_pred ecCCCCcccc
Confidence 9999975443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=106.38 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=96.3
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+-+|.|... .+.+...+.+.+.. ..++.+|||++||+|.+++.++... +...|+++|+++.+++.+++|++.|
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~--~~~~~~vLDl~aGsG~~~l~~a~~~----~~~~V~a~Din~~Av~~a~~N~~~N 104 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGP--KLPRESVLDALSASGIRGIRYALET----GVEKVTLNDINPDAVELIKKNLELN 104 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHh--hcCCCEEEECCCcccHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 447888877 55555566555421 1134789999999999999888763 2348999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+++. .+.++|+...+.. ...||+|++||| .. ...++..+...+++||+++++
T Consensus 105 ~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~-Gs------------------------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 105 GLENEKVFNKDANALLHE--ERKFDVVDIDPF-GS------------------------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCceEEEhhhHHHHHhh--cCCCCEEEECCC-CC------------------------cHHHHHHHHHHhcCCCEEEEE
Confidence 9876 7999999776542 357999999986 21 235677767778999999996
Q ss_pred E
Q 025180 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 158 A 158 (382)
T PRK04338 158 A 158 (382)
T ss_pred e
Confidence 4
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-12 Score=102.65 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++-+++||+|||||..+..+-.+. ..++|+|||.+|+++|.+. ++-..+.+.++..+.....+++||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchHHHHHHHHHHHhhhccCCcccchh
Confidence 346899999999999888777663 3799999999999998764 233366667776666545568999999
Q ss_pred ECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHH
Q 025180 121 VNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQIC 183 (256)
Q Consensus 121 ~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~ 183 (256)
+-- ||. -.++.++-.+..+|+|||.+.|+..+.. ....++
T Consensus 194 AaDVl~Yl-----------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr 250 (287)
T COG4976 194 AADVLPYL-----------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVR 250 (287)
T ss_pred hhhHHHhh-----------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHH
Confidence 843 221 1267788889999999999999764321 235788
Q ss_pred HHHHHcCCcEEEEEec
Q 025180 184 LQMMEKGYAARIVVQR 199 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~~ 199 (256)
..+...||.++.+...
T Consensus 251 ~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 251 ALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHhcCceEEEeecc
Confidence 8889999988766543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-10 Score=99.85 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=116.1
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+..+.+.+...+.+++..+++- .++.+|||+|++.|.-+..+++.+. ..+..|+++|+++.-++..++|+.+
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p------~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDP------KPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCC------CCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3445566666666666655543 6899999999999999999998865 2345679999999999999999999
Q ss_pred cCCcc-eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccC
Q 025180 93 HNVHA-DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~Lkpg 166 (256)
.|+.+ .+++.|.......... ++||.|++++|-.-..- -++.++..|.-... -...+..+|....++||||
T Consensus 205 lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~---irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGV---IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcc---cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99987 7777776544332222 35999999999754322 22333333322111 1225678899999999999
Q ss_pred eEEEEEEeCCCCH---HHHHHHHHHc
Q 025180 167 GWLYLVTLTANDP---SQICLQMMEK 189 (256)
Q Consensus 167 G~l~~~~~~~~~~---~~~~~~~~~~ 189 (256)
|++++++++.... ..+...+.+.
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred CEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999876532 2344445443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=86.00 Aligned_cols=102 Identities=27% Similarity=0.448 Sum_probs=78.0
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+|+|||+|.++..++. .+...++++|+++.+++.+++........ .++...|+.+... ...+++|+|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999998766655 24569999999999999888644433333 3888889887653 2346899999999
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
++... ......++..+.+.|++||.+++.
T Consensus 75 ~~~~~--------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL--------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh--------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87642 123678899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=98.18 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~~ 114 (256)
+.++|||+|+++|.-++.++..+. ++++++++|.+++..+.|++++...|+.. +++.+|+.+.++... .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 678999999999999999988753 46799999999999999999999998754 899999998876542 26
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- ...+..+++.+.++|++||.+++
T Consensus 156 ~fD~iFiDad------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 8999998521 22367888889999999999886
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=94.89 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. .+..++|+|+++++++.++++ + .+++.+|+.+...++.+++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~----~--~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR----G--VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc----C--CeEEEEEhhhcccccCCCCcCEEEE
Confidence 5689999999999987666543 245789999999999887642 2 3678888876433344578999999
Q ss_pred CCCCCCCCC
Q 025180 122 NPPYVPTPE 130 (256)
Q Consensus 122 npP~~~~~~ 130 (256)
+.++.+..+
T Consensus 82 ~~~l~~~~d 90 (194)
T TIGR02081 82 SQTLQATRN 90 (194)
T ss_pred hhHhHcCcC
Confidence 987765443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=96.07 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhc
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~ 107 (256)
+.+.+.+. +-.+++|||||||+|..+..++.. ++. .|+|+|.++..+-..+---...+.+..+... ...+.
T Consensus 105 ~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~----GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~ 176 (315)
T PF08003_consen 105 DRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR----GAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED 176 (315)
T ss_pred HHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc----CCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh
Confidence 44555543 357899999999999997776655 443 7999999987765433222222333333332 22222
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------------C
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------------T 175 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------~ 175 (256)
++. .+.||+|+|-..++|..+ ....|.++.+.|++||.+++-+- .
T Consensus 177 Lp~--~~~FDtVF~MGVLYHrr~---------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~ 233 (315)
T PF08003_consen 177 LPN--LGAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE 233 (315)
T ss_pred ccc--cCCcCEEEEeeehhccCC---------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC
Confidence 222 478999999777776554 35779999999999999997441 1
Q ss_pred C-----------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 176 A-----------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ~-----------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
. .....+..++++.||..+.+..
T Consensus 234 ~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 234 DRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 1 1346889999999998776653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=107.05 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=91.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---c--CC---cceEEEcchhhchhhhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---H--NV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~--~~---~~~~~~~d~~~~~~~~~ 112 (256)
+++++|||+|||+|..+.++++. .+..+++++|+|+++++.++++... + .. ..+++.+|..+.... .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-C
Confidence 46789999999999987666543 2226999999999999999985321 1 12 237899999887644 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHH
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~ 188 (256)
+++||+|++|+|....+... .....++++.+.+.|+|||++++...+.. ...++.+.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~----------------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALG----------------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CCCCCEEEEeCCCCCCcchh----------------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 47899999998753211110 01135788999999999999988443211 12356777778
Q ss_pred cCCc
Q 025180 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
.||.
T Consensus 435 ~gf~ 438 (521)
T PRK03612 435 AGLA 438 (521)
T ss_pred cCCE
Confidence 8883
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-11 Score=94.61 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=119.3
Q ss_pred cccCCchHHHHHHHHHhhcccccCC--CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 18 YEPCDDSFALVDALLADRINLVEHH--PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~--~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
-.++...+++..++++.+...+..+ +++++|||+|.|..++.+|.. +|+.+|+-+|....-+...+.-..+.++
T Consensus 41 t~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~~FL~~~~~eL~L 116 (215)
T COG0357 41 TAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKIAFLREVKKELGL 116 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHHHHHHHHHHHhCC
Confidence 3466667888889988886555444 689999999999999999976 7888999999999999999999999999
Q ss_pred cc-eEEEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE-
Q 025180 96 HA-DLINTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV- 172 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~- 172 (256)
++ +++++++.+..... . ||+|++- +...+..+.+-+..++|+||.+++.
T Consensus 117 ~nv~i~~~RaE~~~~~~---~~~D~vtsR-------------------------Ava~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 117 ENVEIVHGRAEEFGQEK---KQYDVVTSR-------------------------AVASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred CCeEEehhhHhhccccc---ccCcEEEee-------------------------hccchHHHHHHHHHhcccCCcchhhh
Confidence 86 99999999885432 3 9999982 2233778899999999999987532
Q ss_pred -EeCCCCHHHHHHHHHHcCCcEEEEEecCCC
Q 025180 173 -TLTANDPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 173 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
........+....+...++....+.....+
T Consensus 169 ~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 169 GLAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred HHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 223344556777777778777666655443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=97.69 Aligned_cols=131 Identities=13% Similarity=0.211 Sum_probs=103.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCC
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
.+.+.+|||.|.|-|..++++++. ++ .|+.+|.+|..++.|.-|--..++. .+++.+|+.+....+.+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 457899999999999999888775 45 8999999999999987664333322 2899999999999988999
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-------CCCHHHHHHHHHH
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-------ANDPSQICLQMME 188 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~~~~~ 188 (256)
||+||-+||=+.... .-....|-++++++|||||+++=.... .+....+.+.+.+
T Consensus 206 fDaIiHDPPRfS~Ag------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 206 FDAIIHDPPRFSLAG------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred cceEeeCCCccchhh------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 999999999654332 123568889999999999999864422 2345678899999
Q ss_pred cCCcEE
Q 025180 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.||...
T Consensus 268 vGF~~v 273 (287)
T COG2521 268 VGFEVV 273 (287)
T ss_pred cCceee
Confidence 999843
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=97.97 Aligned_cols=144 Identities=20% Similarity=0.231 Sum_probs=108.6
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+.-++. ..+++.. .+|.+|+|+.+|.|.+++.+|+. ....|+|+|+||.+++.+++|+
T Consensus 164 vD~~Kv~Fsprl~~ER--~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~-----g~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 164 VDVAKVYFSPRLSTER--ARVAELV-----KEGETVLDMFAGVGPFSIPIAKK-----GRPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred EchHHeEECCCchHHH--HHHHhhh-----cCCCEEEEccCCcccchhhhhhc-----CCceEEEEecCHHHHHHHHHHH
Confidence 4555567888765444 3444443 46999999999999999999886 2235999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. ..+++|..+..... ..+|-|+.+.|.. ...++....+.+++||+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~p~~-------------------------a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL--GVADRIIMGLPKS-------------------------AHEFLPLALELLKDGGI 284 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc--ccCCEEEeCCCCc-------------------------chhhHHHHHHHhhcCcE
Confidence 9999876 79999999986553 7899999998853 35778888889999999
Q ss_pred EEEEEeCCCCH------HHHHHHHHHcCCcE
Q 025180 169 LYLVTLTANDP------SQICLQMMEKGYAA 193 (256)
Q Consensus 169 l~~~~~~~~~~------~~~~~~~~~~g~~~ 193 (256)
+.+........ ..+.....+.|++.
T Consensus 285 iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 285 IHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred EEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 98855433222 34455555555543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=107.94 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=102.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
...+..+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++.+ .++..|+......+.++++|.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE
Confidence 356789999999999999999888 899999999999999998888888888876 777778755444455688999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
|+.|.| .|.+ +.++.+.++ +...++..+.++|+|||.+.+.+.......+....+.+.+ |+
T Consensus 421 i~i~FP---DPWp--Kkrh~krRl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 421 IYILFP---DPWI--KNKQKKKRI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred EEEECC---CCCC--CCCCccccc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 999865 1111 112222222 3578899999999999999997765555556666666654 44
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=91.31 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=81.5
Q ss_pred ccCCchHHHHHHHHHhhc---ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-
Q 025180 19 EPCDDSFALVDALLADRI---NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN- 94 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~---~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~- 94 (256)
.-++-+..|++++..... .....++++|||+|||+|..++.++.. .+...|+.+|.++ .++.++.|+..|+
T Consensus 19 ~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 19 KVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRRNIELNGS 93 (173)
T ss_dssp ----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred EEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHHHHHhccc
Confidence 334447777787777421 111357899999999999999988887 3456999999999 9999999999987
Q ss_pred -Cc--ceEEEcchhhch-hh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025180 95 -VH--ADLINTDIASGL-EK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 -~~--~~~~~~d~~~~~-~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.. ..+...|+.+.. .. ....+||+|++.-..|.. ...+.++..+.++|+++|.+
T Consensus 94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------------------~~~~~L~~tl~~ll~~~~~v 152 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------------------ELFEPLVRTLKRLLKPNGKV 152 (173)
T ss_dssp ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------------------GGHHHHHHHHHHHBTT-TTE
T ss_pred cccccccCcEEEecCcccccccccccCCEEEEecccchH---------------------HHHHHHHHHHHHHhCCCCEE
Confidence 22 266666765533 12 234689999984433321 12678899999999999997
Q ss_pred EEEEeC
Q 025180 170 YLVTLT 175 (256)
Q Consensus 170 ~~~~~~ 175 (256)
++....
T Consensus 153 l~~~~~ 158 (173)
T PF10294_consen 153 LLAYKR 158 (173)
T ss_dssp EEEEE-
T ss_pred EEEeCE
Confidence 776553
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-10 Score=89.53 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=97.0
Q ss_pred cCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025180 20 PCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
+++..+++..++++.+..++ +..+.+++|+|+|.|..++.++.. .|+.+++.+|.+..-+...+.-+...++++
T Consensus 24 ~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n 99 (184)
T PF02527_consen 24 IRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKVAFLKEVVRELGLSN 99 (184)
T ss_dssp --SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred CCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHHHHHHHHHHHhCCCC
Confidence 34445666678888775443 223338999999999999999998 789999999999999999999999999986
Q ss_pred -eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 98 -DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 -~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+++++++.+ .....+||+|++- ++ ..+..+++-+..+|++||++++. .+.
T Consensus 100 v~v~~~R~E~---~~~~~~fd~v~aR------------------Av-------~~l~~l~~~~~~~l~~~G~~l~~-KG~ 150 (184)
T PF02527_consen 100 VEVINGRAEE---PEYRESFDVVTAR------------------AV-------APLDKLLELARPLLKPGGRLLAY-KGP 150 (184)
T ss_dssp EEEEES-HHH---TTTTT-EEEEEEE------------------SS-------SSHHHHHHHHGGGEEEEEEEEEE-ESS
T ss_pred EEEEEeeecc---cccCCCccEEEee------------------hh-------cCHHHHHHHHHHhcCCCCEEEEE-cCC
Confidence 999999988 2235789999992 11 12678899999999999999984 444
Q ss_pred CCHHHHHH
Q 025180 177 NDPSQICL 184 (256)
Q Consensus 177 ~~~~~~~~ 184 (256)
...+++..
T Consensus 151 ~~~~El~~ 158 (184)
T PF02527_consen 151 DAEEELEE 158 (184)
T ss_dssp --HHHHHT
T ss_pred ChHHHHHH
Confidence 44444433
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-11 Score=107.81 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=114.8
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+|+...+++++.+.. .+..+|+|+.||+|.+.+.....+++..-...++|.|+++.....|+.|+-.++
T Consensus 166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 5699998888888876665 245699999999999999999888653313689999999999999999999999
Q ss_pred Ccc--eEEEcchhhchhh---hcCCCccEEEECCCCCCCCCcccc--cccch-hhhcCCCC-cHHHHHHHHHHHhhcccc
Q 025180 95 VHA--DLINTDIASGLEK---RLAGLVDVMVVNPPYVPTPEDEVG--REGIA-SAWAGGEN-GRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ~~~--~~~~~d~~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~Lkp 165 (256)
+.. ....+|-...... ...+.||.|++||||......... ..+-. ....+... .......+++.+...|+|
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 873 5555654443222 134679999999999744333221 11111 11122111 111226788999999999
Q ss_pred CeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025180 166 RGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
||++.++.+... ....+++.+...
T Consensus 319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 319 GGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred CceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 998887776432 345677777663
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=96.09 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. .+ +|+|+|+++.+++.+++++.. ...+++++|+.
T Consensus 29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~----~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLER----AA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHh----CC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 45556666543 246789999999999999888876 32 899999999999999987642 23489999988
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ +-.+|.|++||||+.
T Consensus 98 ~~~~~--~~~~~~vv~NlPY~i 117 (272)
T PRK00274 98 KVDLS--ELQPLKVVANLPYNI 117 (272)
T ss_pred cCCHH--HcCcceEEEeCCccc
Confidence 76322 112699999999974
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-11 Score=95.41 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=87.6
Q ss_pred HHHHHhhccccc---CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 29 DALLADRINLVE---HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 29 ~~l~~~~~~~~~---~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|++.+++.+.+ ....+|||+|||.|.....+.+--. .++..+++.|.+|.+++..+++...+.........|+.
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~--n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt 132 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSP--NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT 132 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCC--CCCeEEEEcCCChHHHHHHHhccccchhhhcccceecc
Confidence 356666655432 3334899999999998777766511 23489999999999999999887655433345555654
Q ss_pred hch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 106 SGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...+++|+|++-..+...+.. -+...++.+.++|||||.+++-.
T Consensus 133 ~~~~~~~~~~~svD~it~IFvLSAi~pe-------------------k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 133 SPSLKEPPEEGSVDIITLIFVLSAIHPE-------------------KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred chhccCCCCcCccceEEEEEEEeccChH-------------------HHHHHHHHHHHHhCCCcEEEEee
Confidence 432 23456899999986555433332 26889999999999999999854
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=98.48 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcc
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d 103 (256)
.+++.+.+... ..++.+|||+|||+|.++..++.. ...++|+|+++.+++.+++++..++. . .+++++|
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34555555443 247789999999999999887765 24799999999999999999887653 3 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
+.+... ..||.|++|+||+...
T Consensus 94 al~~~~----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPYQISS 115 (294)
T ss_pred Hhhhcc----cccCEEEecCCcccCc
Confidence 987532 4689999999998654
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=86.11 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=76.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCC-ccEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGL-VDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~-fD~Ii 120 (256)
..|+|++||.|..++.+|+.. .+|+++|+++..++.|+.|+...|+.. .++++|+.+......... +|+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999972 389999999999999999999999754 999999999876543233 89999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
++|||.-..-........... .... ...++++.+.++ .++ +++..|......++.+...+
T Consensus 75 lSPPWGGp~Y~~~~~fdL~~~-~~p~----~~~~l~~~~~~~-t~n--v~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDVFDLEKS-MQPF----NLEDLLKAARKI-TPN--VVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp E---BSSGGGGGSSSB-TTTS-SSS------HHHHHHHHHHH--S---EEEEEETTB-HHHHHHT---
T ss_pred ECCCCCCccccccCccCHHHc-cCCC----CHHHHHHHHHhh-CCC--EEEEeCCCCCHHHHHHHhcc
Confidence 999997533322111111010 0110 134555554433 333 33335877777777666543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=97.42 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++.+|||+|||+|.++..+++. ...++|+|+++.+++.+++++... -+.+++++|+
T Consensus 15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~ 84 (258)
T PRK14896 15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEecc
Confidence 344455555442 246799999999999999888875 248999999999999999887541 1348999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+... ..||.|++|+||+..
T Consensus 85 ~~~~~----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 LKVDL----PEFNKVVSNLPYQIS 104 (258)
T ss_pred ccCCc----hhceEEEEcCCcccC
Confidence 87532 358999999999753
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=92.11 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH------------
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE------------ 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~------------ 91 (256)
...|++++.... ..++.+||++|||.|.....++.. +..|+|+|+|+.+++.+.+...
T Consensus 29 np~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~ 98 (226)
T PRK13256 29 NEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYK 98 (226)
T ss_pred CHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccc
Confidence 355556654431 235689999999999998888775 5689999999999998755210
Q ss_pred -HcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025180 92 -AHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
..+...++.++|+++.... ...+.||+|+-.--|...+. ....++++.+.++|+|||.+
T Consensus 99 ~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-------------------~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 99 LYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-------------------DLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred eeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-------------------HHHHHHHHHHHHHhCCCcEE
Confidence 1123448999999987421 12367999987544443332 23678999999999999998
Q ss_pred EEEEe
Q 025180 170 YLVTL 174 (256)
Q Consensus 170 ~~~~~ 174 (256)
++++.
T Consensus 160 lll~~ 164 (226)
T PRK13256 160 LLLVM 164 (226)
T ss_pred EEEEE
Confidence 88764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=91.38 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=87.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cC------C------cceEEEcchhhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HN------V------HADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~------~------~~~~~~~d~~~~ 107 (256)
.++.+||.+|||.|.-...++.. +.+|+|+|+++.+++.+.+.... .. . ..++.++|+++.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 56789999999999998888775 56999999999999988432111 10 0 126889999987
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|+-.--+...+.. ...++.+.+.++|+|||.+++++-.+.
T Consensus 110 ~~~-~~g~fD~iyDr~~l~Alpp~-------------------~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPE-DVGKFDLIYDRTFLCALPPE-------------------MRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGS-CHHSEEEEEECSSTTTS-GG-------------------GHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred Chh-hcCCceEEEEecccccCCHH-------------------HHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 543 22579999986555444332 267899999999999999555442111
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025180 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++.+.+. .+|+++.+.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEe
Confidence 2456666665 667665544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-09 Score=91.21 Aligned_cols=131 Identities=22% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+-+|-|... +..-+..+...........+.+|||+.||+|..++.++.... .-..|+++|+++++++.+++|++
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~---ga~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE---GVREVFANDINPKAVESIKNNVE 90 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 4568888766 222222121111110011236899999999999998887631 11379999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.|++.. .+.+.|+...+... ..+||+|..+| |.. ...+++.+.+.+++||.++
T Consensus 91 ~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP-fGs------------------------~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 91 YNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP-FGT------------------------PAPFVDSAIQASAERGLLL 144 (374)
T ss_pred HhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-CCC------------------------cHHHHHHHHHhcccCCEEE
Confidence 998865 89999998886542 35799999998 431 2367888888999999999
Q ss_pred EEE
Q 025180 171 LVT 173 (256)
Q Consensus 171 ~~~ 173 (256)
++.
T Consensus 145 vTa 147 (374)
T TIGR00308 145 VTA 147 (374)
T ss_pred EEe
Confidence 963
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=91.47 Aligned_cols=163 Identities=21% Similarity=0.221 Sum_probs=111.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+...+.+..++..++.. .++.+|||+|+|.|.-+..++..+. ..+.+++.|+++..++..+.++.+.|
T Consensus 64 ~G~~~vQd~sS~l~~~~L~~------~~~~~VLD~CAapGgKt~~la~~~~---~~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALDP------QPGERVLDMCAAPGGKTTHLAELMG---NKGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHTT------TTTSEEEESSCTTSHHHHHHHHHTT---TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcEEecccccccccccccc------cccccccccccCCCCceeeeeeccc---chhHHHHhccCHHHHHHHHHHHHhcC
Confidence 34444444444555444432 5889999999999999999998864 24699999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhcc----cc
Q 025180 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLL----SK 165 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~L----kp 165 (256)
..+ .+...|............||.|+.++|-.... ...+.+...|.-... -......+|..+.+.+ ||
T Consensus 135 ~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G---~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 135 VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLG---TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp -SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGG---GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred CceEEEEeeccccccccccccccchhhcCCCccchh---hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 877 66668887775444445799999999975432 222233333321111 1225678899999999 99
Q ss_pred CeEEEEEEeCCC---CHHHHHHHHHHc
Q 025180 166 RGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
||++++++++.. ....+...+++.
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 999999998543 233344445544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=86.54 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
..-+.+.+.+.++ ..+.+|||||||||.-...++.. .|+.+..-.|.++......+..+...+.++ ..+.
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~----lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQA----LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHH----CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 3445555555553 23346999999999999888888 788999999999999888888888877765 6667
Q ss_pred cchhhchhhh------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 102 TDIASGLEKR------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|+.+...+. ..++||+|+|.=-.+.. .+...+.+++.+.++|++||.+++.-|
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~-------------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLHIS-------------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHHhc-------------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7777663332 24689999982111111 123468899999999999999998654
|
The function of this family is unknown. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=100.50 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.|+|+|||+|-+...+++...+.....+|+|+|.++.++..+++.+..+++.. +++++|+.+...+ .++|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 6899999999999887776664333345689999999999988888888888854 9999999998654 5999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+-. .. .+.+. +.....|....+.|||+|+++
T Consensus 264 SEl--------------LG-sfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SEL--------------LG-SFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E-----------------B-TTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred Eec--------------cC-Ccccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 931 10 11111 135678888999999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-10 Score=91.30 Aligned_cols=123 Identities=13% Similarity=0.213 Sum_probs=86.5
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025180 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
.|..+..++.++.+.|-.. +..++-++.+.+..-. .+++.++||||.|..++ .-.++.+..+++++|.|+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCI----YPliG~~eYgwrfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCI----YPLIGVHEYGWRFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccc----cccccceeecceeecCccCH
Confidence 5667778899999988655 5555555555553321 25678999999999995 44555556689999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCc
Q 025180 81 YAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~ 131 (256)
.+++.|+.++..| ++.. ++.. .|-....... ..+.||+++|||||+.+..+
T Consensus 113 ~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~d 169 (292)
T COG3129 113 QSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAAD 169 (292)
T ss_pred HHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhHHH
Confidence 9999999999988 5543 3322 2221111111 24789999999999977654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=90.62 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||.+|+|.|..+.++.+. .+..+++++|+++++++.|++.+..++ ...+++.+|....+.. .+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~----~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH----KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCC
Confidence 35689999999999987666553 334589999999999999999876542 1238999999998743 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+- +.... +.. .-....+++ .+.+.|+|||++++-
T Consensus 177 yDvIi~D~~d-p~~~~------~~~--------~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLAD-PVEGG------PCY--------QLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ccEEEecCCC-ccccC------cch--------hhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999998531 10000 000 011356777 889999999998874
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=95.95 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=98.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.+.|+ +|+-... .+.|...+-+.... ..++.++|++||||.+++++++.. ..|+|+|+++.+++.|++
T Consensus 353 F~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 353 FRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEK 423 (534)
T ss_pred EEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhh
Confidence 556666 6666655 77777777776542 456999999999999998888752 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCC---Ccc-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKRLAG---LVD-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~---~fD-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|...||+.+ +|+++..++..+..... +=+ ++|.+||=. |+ ...++..+..+-
T Consensus 424 nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~---------------------Gl--h~~~ik~l~~~~ 480 (534)
T KOG2187|consen 424 NAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK---------------------GL--HMKVIKALRAYK 480 (534)
T ss_pred cchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcc---------------------cc--cHHHHHHHHhcc
Confidence 999999988 99999777776554332 345 778888831 11 346677776665
Q ss_pred ccCeEEEEEEeCC
Q 025180 164 SKRGWLYLVTLTA 176 (256)
Q Consensus 164 kpgG~l~~~~~~~ 176 (256)
++.-.+++++...
T Consensus 481 ~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 481 NPRRLVYVSCNPH 493 (534)
T ss_pred CccceEEEEcCHH
Confidence 5776777765433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=87.59 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. .+ .++++|+++.+++.++++... .-..+++++|+.
T Consensus 16 ~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~----~~--~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~ 85 (253)
T TIGR00755 16 SVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKR----AK--KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHh----CC--cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchh
Confidence 34455555443 246789999999999998888776 32 699999999999999887643 123388999988
Q ss_pred hchhhhcCCCcc---EEEECCCCC
Q 025180 106 SGLEKRLAGLVD---VMVVNPPYV 126 (256)
Q Consensus 106 ~~~~~~~~~~fD---~Ii~npP~~ 126 (256)
+...+ .+| +|++|+||+
T Consensus 86 ~~~~~----~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP----DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh----HcCCcceEEEcCChh
Confidence 76432 455 999999986
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=93.10 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=77.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
-.++.|||+|||||.+++..|+. + ...|+|+|-+.- ++.|++.+..|++.. +++.+.+.+...| .+++|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDi 130 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDI 130 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC--ccceeE
Confidence 37899999999999999888887 3 348999998765 599999999999876 8999998888433 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++- |....+. -...++.++..--+.|+|||.++
T Consensus 131 IvSE--------------WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSE--------------WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred Eeeh--------------hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 9992 2221110 01123444444567899999987
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-10 Score=95.87 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=90.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-------HHHHHHHHcCCcc---eEEEcchhhchhh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-------VTRKTLEAHNVHA---DLINTDIASGLEK 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~-------~a~~~~~~~~~~~---~~~~~d~~~~~~~ 110 (256)
++|+.|+|+..|||.+.++++.. |+.|+|.||+-.++. ..+.|+++.|... .+..+|.......
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 68999999999999998877765 679999999999887 2356777777543 7888888766433
Q ss_pred hcCCCccEEEECCCCCCCCCcccc-cccc--------hhhhcCCCC--c-HHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVG-REGI--------ASAWAGGEN--G-RAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~-~~~~--------~~~~~~~~~--~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
....||.|||+|||......++. .+.. ...+..... . .....++|.-..+.|..||++++..+.
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 25789999999999876654322 1111 111111111 0 124567788889999999999997763
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=86.15 Aligned_cols=124 Identities=19% Similarity=0.322 Sum_probs=80.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-------------------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH------------------- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~------------------- 96 (256)
..++.+|||||-+|.+++.+++.++. ..|.|+||++..|+.|++++.... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 36899999999999999999998653 379999999999999999875321 11
Q ss_pred -----------c--------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025180 97 -----------A--------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 97 -----------~--------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+ .+...|+.+ .....||+|+|-- ..+|.+.-| |-+-+..++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~----~~~~~fDiIlcLS----------iTkWIHLNw-----gD~GL~~ff~ 193 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLD----MIQPEFDIILCLS----------ITKWIHLNW-----GDDGLRRFFR 193 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhh----hccccccEEEEEE----------eeeeEeccc-----ccHHHHHHHH
Confidence 0 011111221 2235799999821 012222222 1223789999
Q ss_pred HHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025180 158 SADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+.++|.|||++++---++.......+..+
T Consensus 194 kis~ll~pgGiLvvEPQpWksY~kaar~~e 223 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEPQPWKSYKKAARRSE 223 (288)
T ss_pred HHHHhhCcCcEEEEcCCchHHHHHHHHHHH
Confidence 999999999999983224443334444443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=83.12 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=99.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.|+.+|+|-|+|+|.++.++++.++ |..+++.+|......+.|.+-++.+++.. ++.+.|+....-......+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~---ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA---PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC---cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 6899999999999999999999874 67799999999999999999999999865 788888765532222467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|+.+.|- ....+..+.+.||.+| +++-.++...+.......+.++||..+...
T Consensus 181 VFLDlPa--------------------------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 181 VFLDLPA--------------------------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEEcCCC--------------------------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9998772 2244555666888776 666655555555667788888899765544
Q ss_pred e
Q 025180 198 Q 198 (256)
Q Consensus 198 ~ 198 (256)
.
T Consensus 235 E 235 (314)
T KOG2915|consen 235 E 235 (314)
T ss_pred E
Confidence 3
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=84.09 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=88.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...++||.|+|.|.++-.+ |.+ ..+ .|..+|..+..++.|++.+....... ++.+..+.++.++ +++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~l---Ll~-~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGL---LLP-VFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHT---CCC-C-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEE
T ss_pred CcceEEecccccchhHHHH---HHH-hcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEE
Confidence 5689999999999986433 222 222 89999999999999997655422232 7888888877654 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
+.-...+..+. .+-.+|++|...|+|+|.+++-.... +......++
T Consensus 128 ~QW~lghLTD~-------------------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 128 IQWCLGHLTDE-------------------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFREL 188 (218)
T ss_dssp EES-GGGS-HH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHH
T ss_pred ehHhhccCCHH-------------------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHH
Confidence 96544433332 36799999999999999999844211 124578999
Q ss_pred HHHcCCcEEEEEecCCCC
Q 025180 186 MMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~~~~ 203 (256)
+++.|+.++....+..-+
T Consensus 189 F~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp HHHCT-EEEEEEE-TT--
T ss_pred HHHcCCEEEEeccccCCC
Confidence 999999987766554433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=80.45 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
.++++||+|.-||.-++..|..+. +++.|+++|++++.++.+.+..+..++.. ++++++..+.+.+. ..++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 679999999999999999988874 36799999999999999998888888765 89999988776543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+++.+- ....+..+.+++.+++++||++++
T Consensus 150 fDfaFvDa------------------------dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 150 FDFAFVDA------------------------DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeEEEEcc------------------------chHHHHHHHHHHHhhcccccEEEE
Confidence 99999851 123355889999999999999998
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=83.76 Aligned_cols=127 Identities=21% Similarity=0.301 Sum_probs=75.1
Q ss_pred hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcc----cCC-CceEEEEeCCHHHHHHHHHHH-------
Q 025180 24 SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ----EVP-GVQYIATDINPYAVEVTRKTL------- 90 (256)
Q Consensus 24 ~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~----~~~-~~~v~giD~~~~~i~~a~~~~------- 90 (256)
.+.+.+.+++ .+......+..+|+.+||+||.-+-.+|..+.+ ..+ ..+|+|+|+|+.+++.|++-+
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 5667777774 332222246789999999999866666665544 112 579999999999999997721
Q ss_pred -------HHc-------CC--------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025180 91 -------EAH-------NV--------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 91 -------~~~-------~~--------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
... .. ...|...|+.+. ....+.||+|+|-=... +| .
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlI--------------YF-----~ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLI--------------YF-----D 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGG--------------GS------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEE--------------Ee-----C
Confidence 110 11 116778888772 22347899999932221 22 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025180 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......+++.+++.|+|||.+++
T Consensus 151 ~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 151 PETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEE
Confidence 23468999999999999999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=89.28 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C----CcceEEEcchhhchh-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N----VHADLINTDIASGLE- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~----~~~~~~~~d~~~~~~- 109 (256)
++.+|||+|||-|.- +.+.... .. ..++|+|++.+.++.|+++.... . ....++.+|......
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchh---HHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 789999999998875 3444322 22 38999999999999999988321 1 122678887764421
Q ss_pred -hhcC--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 110 -KRLA--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 110 -~~~~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+.+ ..||+|-|...++..-.. ......++..+.+.|+|||+++.+++ ....+...+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fes-----------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~~l 196 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFES-----------------EEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVKRL 196 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSS-----------------HHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred hhccccCCCcceeehHHHHHHhcCC-----------------HHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHHHH
Confidence 1222 489999997554432221 33467899999999999999999876 345555555
Q ss_pred HH
Q 025180 187 ME 188 (256)
Q Consensus 187 ~~ 188 (256)
.+
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 44
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=81.59 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=83.7
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------c--
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--------H-- 96 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--------~-- 96 (256)
+...+++++... -.++.+.||+|+|||.++.+++.+++. ++...+|||.-++.++.+++|+...-. +
T Consensus 68 mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 68 MHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 334444444311 158999999999999999999988873 454569999999999999999976541 1
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..++.+|......+ ...||.|.+.-- ...+.+.+...|++||++++
T Consensus 145 ~l~ivvGDgr~g~~e--~a~YDaIhvGAa---------------------------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAE--QAPYDAIHVGAA---------------------------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ceEEEeCCccccCCc--cCCcceEEEccC---------------------------ccccHHHHHHhhccCCeEEE
Confidence 16888888777554 478999988410 23556677778999999988
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=84.56 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+..+|+|||+|+|.+++.+++. +|+.+++..|. |..++.+++ .-..+++.+|+.+.. +. +|+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~----P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL----PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----cc-ccceee
Confidence 5579999999999998888777 99999999998 888888877 223489999998432 23 999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEEEEe
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 174 (256)
.--++..++. ....+|+++++.|+|| |+++++..
T Consensus 165 ~~vLh~~~d~-------------------~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 165 RHVLHDWSDE-------------------DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESSGGGS-HH-------------------HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ehhhhhcchH-------------------HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 6555444332 2678999999999999 99999775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=79.26 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+...|.|+|||.+.++ +.+. .+.+|+.+|+... +..+..+|+... |..++++|++|+
T Consensus 72 ~~~viaD~GCGdA~la----~~~~---~~~~V~SfDLva~--------------n~~Vtacdia~v--PL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVP---NKHKVHSFDLVAP--------------NPRVTACDIANV--PLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH-----S---EEEEESS-S--------------STTEEES-TTS---S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHH----Hhcc---cCceEEEeeccCC--------------CCCEEEecCccC--cCCCCceeEEEE
Confidence 4579999999999964 4332 2347999998652 127888999776 445789999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--CCHHHHHHHHHHcCCcEEEEEec
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--NDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.-- ..+..++.++.++||+||.+.+.+... ...+...+.+...||+.....
T Consensus 129 cLSLMG----------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-- 184 (219)
T PF05148_consen 129 CLSLMG----------------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-- 184 (219)
T ss_dssp ES---S----------------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred EhhhhC----------------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc--
Confidence 643211 127899999999999999999977644 345678888889999876532
Q ss_pred CCCCccEEEEEEEecC
Q 025180 200 STEEENLHIIKFWRDF 215 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~ 215 (256)
.....+++.++.|..
T Consensus 185 -~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 185 -ESNKHFVLFEFKKIR 199 (219)
T ss_dssp ---STTEEEEEEEE-S
T ss_pred -cCCCeEEEEEEEEcC
Confidence 334577888888766
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=75.21 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~-~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
.+++++.+.+. ..++.+|+|+|||+|. ++..+++. +..|+|+|+++.+++.++++. .+++.+|+
T Consensus 3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC------CeEEECcC
Confidence 35666666543 3466899999999996 66555543 569999999999998887752 38999999
Q ss_pred hhchhhhcCCCccEEEE-CCC
Q 025180 105 ASGLEKRLAGLVDVMVV-NPP 124 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~-npP 124 (256)
++..... -+.+|+|.+ .||
T Consensus 68 f~p~~~~-y~~a~liysirpp 87 (134)
T PRK04148 68 FNPNLEI-YKNAKLIYSIRPP 87 (134)
T ss_pred CCCCHHH-HhcCCEEEEeCCC
Confidence 8875442 367999997 444
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=76.63 Aligned_cols=132 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++||=+|=.- ..+++++.. ++..+|+.+|+++..++..++...+.|++.+.+..|+.+.+++...++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALT----GLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 3689999888433 345555543 34469999999999999999999999999999999999999887789999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCC--H---HHHHHHHHHcCCcEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAND--P---SQICLQMMEKGYAAR 194 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~--~---~~~~~~~~~~g~~~~ 194 (256)
++|||- ..-+.-|+.+..+.||..| ..++ ..+... . .++++.+.+.|+-..
T Consensus 118 TDPPyT----------------------~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 118 TDPPYT----------------------PEGLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp E---SS----------------------HHHHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred eCCCCC----------------------HHHHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999985 2336788999999999877 4444 333332 2 257788888898876
Q ss_pred EEEecC
Q 025180 195 IVVQRS 200 (256)
Q Consensus 195 ~~~~~~ 200 (256)
.+.+..
T Consensus 175 dii~~F 180 (243)
T PF01861_consen 175 DIIPDF 180 (243)
T ss_dssp EEEEEE
T ss_pred HHHhhh
Confidence 666543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-09 Score=84.91 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.++|+|||+|.-++.++.. ++ +|+|+|+|+.|++.|++....... +..+...++.+.... ++++|+|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~-----~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI~ 105 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH-----YK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLIT 105 (261)
T ss_pred cceEEEeccCCCcchHHHHHh-----hh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--Ccceeeeh
Confidence 349999999999866666665 33 799999999999998875432221 124444444443222 68999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeC--CCCHHHHHHHHHHcCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLT--ANDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~--~~~~~~~~~~~~~~g~ 191 (256)
|-=. .+ +-.++++.+.+.++|++.| .+.+.... ...-.+....+.+...
T Consensus 106 ~Aqa----------------~H------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 106 AAQA----------------VH------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhh----------------HH------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 8311 11 1237899999999999887 54443322 1122355555555433
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-08 Score=83.32 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-C------Ccce
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-N------VHAD 98 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~------~~~~ 98 (256)
-+-.||...+-....+++..++|+|||-|.-++-.-+. +- ..++|+||.+..++.|+++.... + .+..
T Consensus 101 nfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 101 NFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred hhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 34455555543334468899999999999874333222 22 37999999999999998876532 1 1237
Q ss_pred EEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 99 LINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 99 ~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++.+|...... ++.+-+||+|-|...++..-..+ .-..-++..+...|+|||+++-..|
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete-----------------e~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE-----------------ESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccH-----------------HHHHHHHHHHHhhcCCCcEEEEecC
Confidence 88888765432 11234499999977665432221 2256789999999999999998766
Q ss_pred CCCCHHHHHHHHHHc
Q 025180 175 TANDPSQICLQMMEK 189 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (256)
....+...++..
T Consensus 239 ---dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 239 ---DSDVIIKRLRAG 250 (389)
T ss_pred ---cHHHHHHHHHhc
Confidence 345666666654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-08 Score=80.29 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-.+++++|+++..++.|++.+..... ..+++.+|....+......+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~----~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH----PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS----TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhc----CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 46899999999999975544432 3345899999999999999998765321 23899999999887643338
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+.+.+- +..... .+ ....+++.+.+.|+|||++++-..+.
T Consensus 151 yDvIi~D~~d-p~~~~~--------~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAP--------NL--------FTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSS-TTSCGG--------GG--------SSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCC-CCCCcc--------cc--------cCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9999997653 111110 01 14688999999999999999865433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=74.80 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=97.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
|+|+||--|.+++.+.+. +.--.++++|+++.-++.|++++...++.. ++..+|..+.+.+. +..|.|+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIA- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIA- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEE-
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEe-
Confidence 689999999999988886 333479999999999999999999998765 88999988876552 237887762
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCC
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 203 (256)
|+ |-....++|+.....++....+++ .| ......+++++.+.||............
T Consensus 74 ---------------------GM-GG~lI~~ILe~~~~~~~~~~~lIL-qP-~~~~~~LR~~L~~~gf~I~~E~lv~e~~ 129 (205)
T PF04816_consen 74 ---------------------GM-GGELIIEILEAGPEKLSSAKRLIL-QP-NTHAYELRRWLYENGFEIIDEDLVEENG 129 (205)
T ss_dssp ---------------------EE--HHHHHHHHHHTGGGGTT--EEEE-EE-SS-HHHHHHHHHHTTEEEEEEEEEEETT
T ss_pred ---------------------cC-CHHHHHHHHHhhHHHhccCCeEEE-eC-CCChHHHHHHHHHCCCEEEEeEEEeECC
Confidence 22 224567888888877777667776 44 4568899999999999987665555555
Q ss_pred ccEEEEEEEecCccc
Q 025180 204 ENLHIIKFWRDFDIQ 218 (256)
Q Consensus 204 ~~~~l~~~~~~~~~~ 218 (256)
-.+.++.+.+.....
T Consensus 130 ~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 130 RFYEIIVAERGEEKP 144 (205)
T ss_dssp EEEEEEEEEESSS--
T ss_pred EEEEEEEEEeCCCCC
Confidence 555666666655444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=75.53 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=60.1
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---C-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025180 74 IATDINPYAVEVTRKTLEAHN---V-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 74 ~giD~~~~~i~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+|++|++.|+++..... . ..+++++|+.+. ++.+++||+|++..-+.+..+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d------------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVD------------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCC-------------------
Confidence 489999999999987765322 2 248999999876 445678999999754433222
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 150 AVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
...++++++++|||||.+++....
T Consensus 60 --~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --HHHHHHHHHHHcCcCeEEEEEECC
Confidence 578899999999999999987643
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=73.82 Aligned_cols=122 Identities=23% Similarity=0.310 Sum_probs=70.9
Q ss_pred cccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----------------------
Q 025180 36 INLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------------------- 93 (256)
Q Consensus 36 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------------------- 93 (256)
..+....+.+++|+|||+|.++--+... +.+. =..|+|.|+++++++.|++|+...
T Consensus 45 ~~l~~~~p~tLyDPCCG~gyLLTVlGLL-h~~~-l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kp 122 (246)
T PF11599_consen 45 HYLEGKGPYTLYDPCCGSGYLLTVLGLL-HRRR-LRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKP 122 (246)
T ss_dssp CTSSS-S-EEEEETT-TTSHHHHHHHHH-TGGG-EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--H
T ss_pred HhhcCCCCeeeeccCCCccHHHHHHHHh-hhHH-HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCc
Confidence 3334567899999999999987666554 2211 137999999999999999876211
Q ss_pred -------------------C--CcceEEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025180 94 -------------------N--VHADLINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 -------------------~--~~~~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
| .+..+.+.|+++.... . .....|+|+.+.||....+ +.++.+.
T Consensus 123 s~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~------------W~g~~~~ 190 (246)
T PF11599_consen 123 SHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS------------WQGEGSG 190 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS------------TTS---H
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc------------ccCCCCC
Confidence 1 1114777787775431 1 1244799999999986443 3333445
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025180 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+-...++..++.+|-+++++.+
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEE
Confidence 5678999999999955555555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-08 Score=73.07 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=95.0
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
..|+ +..+++.+...+.. ..+.-|||+|.|||.++-++.... .+...++++|+|++-+....+... ..
T Consensus 29 I~Ps--Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~g---v~~~~L~~iE~~~dF~~~L~~~~p----~~ 96 (194)
T COG3963 29 ILPS--SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRG---VRPESLTAIEYSPDFVCHLNQLYP----GV 96 (194)
T ss_pred ecCC--cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcC---CCccceEEEEeCHHHHHHHHHhCC----Cc
Confidence 4444 47777888777652 567899999999999987766553 345689999999999887766542 23
Q ss_pred eEEEcchhhch---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 98 DLINTDIASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ~~~~~d~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++|..+.. .++....||.|||..|+-..+-. ...++++.+...|..||.++..+.
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~-------------------~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-------------------RRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHH-------------------HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 68888887764 23344569999999988655432 256889999999999999998775
Q ss_pred C
Q 025180 175 T 175 (256)
Q Consensus 175 ~ 175 (256)
+
T Consensus 158 g 158 (194)
T COG3963 158 G 158 (194)
T ss_pred c
Confidence 4
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-08 Score=82.11 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+.+... ..++..|||||+|.|.+|..+++. ...|+++|+++.+++..++... ..-+.+++++|+...
T Consensus 19 ~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcC
Confidence 455555443 245899999999999999998887 3489999999999999988765 222338999999887
Q ss_pred hhhhcCCCccEEEECCCCCCCC
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
..+.. ..++.|++|.||+.++
T Consensus 89 d~~~l-~~~~~vVaNlPY~Iss 109 (259)
T COG0030 89 DFPSL-AQPYKVVANLPYNISS 109 (259)
T ss_pred cchhh-cCCCEEEEcCCCcccH
Confidence 43311 1689999999998654
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=80.24 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=96.9
Q ss_pred ccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025180 6 AQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
..+..++..|+.|.-|.+...|-+...+-...+ .++..++|+|||+|.-+..+...+.+......++++|+|.++++.
T Consensus 42 ~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~ 119 (319)
T TIGR03439 42 KLFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQR 119 (319)
T ss_pred HHHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHH
Confidence 345556678888877776666555443333333 356789999999999877777776544445789999999999999
Q ss_pred HHHHHHHcC---CcceEEEcchhhchhhh----cCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025180 86 TRKTLEAHN---VHADLINTDIASGLEKR----LAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 86 a~~~~~~~~---~~~~~~~~d~~~~~~~~----~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+.+++.... +...-+++|+.+.+... ......+++.- --+.+. .+ .....+|+
T Consensus 120 a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf--------~~-----------~ea~~fL~ 180 (319)
T TIGR03439 120 TLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF--------SR-----------PEAAAFLA 180 (319)
T ss_pred HHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC--------CH-----------HHHHHHHH
Confidence 999887322 33366888887764321 12234555541 111111 11 12568899
Q ss_pred HHhh-ccccCeEEEEEE
Q 025180 158 SADK-LLSKRGWLYLVT 173 (256)
Q Consensus 158 ~~~~-~LkpgG~l~~~~ 173 (256)
.+.+ .|+|||.+++-.
T Consensus 181 ~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 181 GFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHhhCCCCCEEEEec
Confidence 9999 999999988743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=80.52 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=67.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++..|||+|.|||.++..+.+. +.+|+|+|+++.|+....++++-..... +++.+|+...-. -.||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cccc
Confidence 478999999999999999877765 5699999999999999998876444333 899999987633 3699
Q ss_pred EEEECCCCCCCCC
Q 025180 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
.+|+|.||..++.
T Consensus 126 ~cVsNlPyqISSp 138 (315)
T KOG0820|consen 126 GCVSNLPYQISSP 138 (315)
T ss_pred eeeccCCccccCH
Confidence 9999999987665
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=78.16 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Cc---ceEEEcchhhchhhhcCCCcc
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VH---ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~---~~~~~~d~~~~~~~~~~~~fD 117 (256)
+++||-+|-|.|..+.++.+. .+-.+++.+||++..++.+++-+.... .. .+++..|..+++.... .+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh----~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKH----LPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhc----CCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCC
Confidence 379999999999988777776 344589999999999999999877543 11 2899999999987643 4899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||++-.-.. . +.. .-+...+.+.|.+.|+++|+++.-.
T Consensus 152 vIi~D~tdp~-g--------p~~--------~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDPV-G--------PAE--------ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCCC-C--------ccc--------ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 9999632110 0 000 1124688999999999999999853
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-08 Score=81.47 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH-----c
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA-----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~-----~ 93 (256)
.+.+.+.+++.+..-......+|+-+||+||.-+-.+|..+.+..+ ..+|+|+|||..+++.|+.-+.. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 5667777777653211124789999999999765555555544343 58999999999999999752211 1
Q ss_pred CCc-------------------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025180 94 NVH-------------------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 ~~~-------------------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
+++ ..|...|+.+..+ ..+.||+|+|-= ...+| .
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRN--------------VLIYF-----d 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRN--------------VLIYF-----D 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcc--------------eEEee-----C
Confidence 110 0445555554432 457899999921 11122 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025180 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......++...+..|+|||.+++
T Consensus 217 ~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Confidence 23478999999999999999998
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=82.23 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=75.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~----~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
...+|+..||+||.-+-.+|..+.+.. .+.+|+|+|+|+.+++.|++-+.. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999986666666554321 247899999999999999874210 00
Q ss_pred ---C----c--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 95 ---V----H--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ---~----~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+ . ..|...|+.+...+ ..+.||+|+|.-.+.+.. ......++..+++.|+|
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~-------------------~~~~~~vl~~l~~~L~p 254 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFD-------------------KTTQERILRRFVPLLKP 254 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCC-------------------HHHHHHHHHHHHHHhCC
Confidence 0 0 16777777663211 247899999933222211 12367899999999999
Q ss_pred CeEEEE
Q 025180 166 RGWLYL 171 (256)
Q Consensus 166 gG~l~~ 171 (256)
||++++
T Consensus 255 gG~L~l 260 (287)
T PRK10611 255 DGLLFA 260 (287)
T ss_pred CcEEEE
Confidence 998877
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-07 Score=75.37 Aligned_cols=125 Identities=16% Similarity=0.301 Sum_probs=89.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
....|.|+|||-+.+ |.. .+ ..|+.+|+.+. +.+++.+|+.+. +..+++.|++|+
T Consensus 180 ~~~vIaD~GCGEaki----A~~----~~-~kV~SfDL~a~--------------~~~V~~cDm~~v--Pl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKI----ASS----ER-HKVHSFDLVAV--------------NERVIACDMRNV--PLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhh----hhc----cc-cceeeeeeecC--------------CCceeeccccCC--cCccCcccEEEe
Confidence 568999999999996 332 12 27999997532 237888999886 556799999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.. | ..+..++.++.++|++||.+++.....+ ....+.+.+...||.....
T Consensus 235 CLSLM------------------g----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~--- 289 (325)
T KOG3045|consen 235 CLSLM------------------G----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK--- 289 (325)
T ss_pred eHhhh------------------c----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh---
Confidence 63321 1 1268999999999999999999765443 4456888889999986433
Q ss_pred CCCCccEEEEEEEecCc
Q 025180 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
......+++.++.+-+.
T Consensus 290 d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 290 DVSNKYFTLFEFKKTPK 306 (325)
T ss_pred hhhcceEEEEEEecCCc
Confidence 23344567777776544
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=73.06 Aligned_cols=128 Identities=15% Similarity=0.192 Sum_probs=93.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-hcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK-RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~-~~~~~fD 117 (256)
..+.+||||.||.|...+.+....... ...|...|.++..++..++.++..|+.. +|.++|+++...- ...-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 578999999999999877777663221 2589999999999999999999999876 9999999876321 1234578
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHH
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMME 188 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 188 (256)
++|...-|-..++ .+.....+..+.+.+.|||++++...++. +.+.+...+..
T Consensus 212 l~iVsGL~ElF~D------------------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 212 LAIVSGLYELFPD------------------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEEEecchhhCCc------------------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 8888655533332 23456678899999999999998653333 34445555544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=78.94 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=101.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++.+|||.|+..|.-+..+|.+++. ...|+|-|.+...++....|+.+.|+.+ .+.+.|..++......++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 579999999999999998888888763 3489999999999999999999999888 777888876643334459999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHH
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~ 188 (256)
|+.+-|..-..- ..+.....+... ..-.....++|..+..++++||+++.++++... .+.+.+++..
T Consensus 316 VLLDAPCSGtgv---i~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 316 VLLDAPCSGTGV---ISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred eeecCCCCCCcc---cccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 999988754111 111111111100 000124668888999999999999999886542 2344555544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-08 Score=78.54 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=77.8
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
++|....+.++......+ ....|+|..||.|..++..+.. ++.|++||++|..+..|+.|++-.|++.
T Consensus 76 vTpe~ia~~iA~~v~~~~------~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYGI~~ 143 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACM------NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYGVPD 143 (263)
T ss_pred eccHHHHHHHHHHHHHhc------CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeecCCc
Confidence 344333555555554443 4578999999999999988887 3489999999999999999999999886
Q ss_pred --eEEEcchhhchhhh--cCCCccEEEECCCCCCCCC
Q 025180 98 --DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 98 --~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~ 130 (256)
.++++|+.+..... ....+|+++..||+.-.+-
T Consensus 144 rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 144 RITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred eeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 99999999886543 2345789999999865443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-06 Score=67.82 Aligned_cols=169 Identities=16% Similarity=0.205 Sum_probs=105.3
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. +..|+..++.-+..++-+++.+||-+|.++|+-.-.++..++ ++..|+|+|.++...+..-...+ ...
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg---~~G~VYaVEfs~r~~rdL~~la~-~R~ 122 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVG---PDGVVYAVEFSPRSMRDLLNLAK-KRP 122 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHHHHH-HST
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccC---CCCcEEEEEecchhHHHHHHHhc-cCC
Confidence 6666666 788999888887777778999999999999998777888764 56799999999987665543322 222
Q ss_pred cceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 96 HADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+..|+..+.. ...-+.+|+|+++-..- + -..-++.++...||+||.++++..
T Consensus 123 NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp--------------------~---Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRMLVEMVDVIFQDVAQP--------------------D---QARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TEEEEES-TTSGGGGTTTS--EEEEEEE-SST--------------------T---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeccCCChHHhhcccccccEEEecCCCh--------------------H---HHHHHHHHHHhhccCCcEEEEEEe
Confidence 33567778776532 11235899999974321 0 134557788889999999998764
Q ss_pred CC-----CCHH----HHHHHHHHcCCcEEE-EEecCCCCccEEEEEEE
Q 025180 175 TA-----NDPS----QICLQMMEKGYAARI-VVQRSTEEENLHIIKFW 212 (256)
Q Consensus 175 ~~-----~~~~----~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~ 212 (256)
.. ..++ ...+.+++.+|+... +.......++..++...
T Consensus 180 a~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 180 ARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred cCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 21 1222 335555666888744 55556666676665443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.4e-07 Score=73.26 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------CC---c-ceEEEcchhhchh
Q 025180 42 HPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------NV---H-ADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~--~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------~~---~-~~~~~~d~~~~~~ 109 (256)
++. +|||+-+|+|..++.++.. ++.|+++|-++.+....++++... +. . .+++++|..+.+.
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 444 9999999999999988876 678999999999999999999874 21 2 3888999999876
Q ss_pred hhcCCCccEEEECCCCCCCCC
Q 025180 110 KRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~ 130 (256)
.. ..+||+|+++|||-+...
T Consensus 160 ~~-~~~fDVVYlDPMfp~~~k 179 (250)
T PRK10742 160 DI-TPRPQVVYLDPMFPHKQK 179 (250)
T ss_pred hC-CCCCcEEEECCCCCCCcc
Confidence 53 347999999999976543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=79.02 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
|.+.+++.+. ..++..++|.+||.|..+..+++.+ .+++.|+|+|.++++++.+++++.. .-...++++|+.+
T Consensus 7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHH
Confidence 3444555543 2577899999999999999888873 1357999999999999999988765 2234899999888
Q ss_pred chhhhcC--CCccEEEECC
Q 025180 107 GLEKRLA--GLVDVMVVNP 123 (256)
Q Consensus 107 ~~~~~~~--~~fD~Ii~np 123 (256)
......+ .++|.|++|.
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 7533222 2799999965
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=79.76 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.|||+|||+|.+++.+++. + ...|+++|-| +|.+.|++.++.|.+.. .++.+.+.+.-. +++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh----C-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC---chhccE
Confidence 46799999999999999888886 2 2389999975 58899999999887654 788888887743 478999
Q ss_pred EEECCC-CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 119 MVVNPP-YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+.|- |.-. ....++.++. ..+.|||.|..+-
T Consensus 247 iISEPMG~mL~-------------------NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLV-------------------NERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhh-------------------hHHHHHHHHH-HHhhcCCCCcccC
Confidence 999652 1100 0112333333 3489999999874
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=78.01 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
.++++|||+|||||.++..+++. + ...|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHHH
Confidence 46789999999999999888775 2 2489999999988764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=73.88 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|||+|+|+|..++..++.. ...|++.|+.|..+...+-|++.|+....+...|... . +..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----PPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----CcceeEEE
Confidence 368999999999999999888873 2379999999999999999999999888888888765 2 35799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..-.|+..+ ...+++. +...|+..|..+++..+.+
T Consensus 148 agDlfy~~~---------------------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNHT---------------------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eeceecCch---------------------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 976665432 2445566 7777888888777654443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-07 Score=74.00 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...++||||+|.|.++..++.. +. +|+++|.|+.|....++ .|. +++ +..+... .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~----f~--~v~aTE~S~~Mr~rL~~----kg~--~vl--~~~~w~~--~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL----FK--EVYATEASPPMRWRLSK----KGF--TVL--DIDDWQQ--TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh----cc--eEEeecCCHHHHHHHHh----CCC--eEE--ehhhhhc--cCCceEEEee
Confidence 5689999999999999888876 33 69999999999765544 333 222 2222211 2358999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
-=. + +.......+|+.+++.|+|+|++++.
T Consensus 158 LNv-----------------L----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNV-----------------L----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhh-----------------h----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 210 0 01112568899999999999998873
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=68.96 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=98.5
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025180 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
...|..+.++-.++...+. -.+.+|||+|.|--++ ...+++..-|...|...|-++++++..++....|-...
T Consensus 9 ciwpseeala~~~l~~~n~---~rg~~ilelgggft~l---aglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNK---IRGRRILELGGGFTGL---AGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL 82 (201)
T ss_pred EecccHHHHHHHHHhchhH---HhHHHHHHhcCchhhh---hhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc
Confidence 4455567777777777543 3578999999985443 23344444677799999999999999988877763322
Q ss_pred ---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 98 ---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+...+...........+||+|+|-- +.|+ -+...++++.++.+|+|.|..++..|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaAD----------------ClFf-----dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAAD----------------CLFF-----DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEecc----------------chhH-----HHHHHHHHHHHHHHhCcccceeEecC
Confidence 34444444333333456899999832 2221 12357889999999999999888766
Q ss_pred CCC-CHHHHHHHHHHcCCcEEE
Q 025180 175 TAN-DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 175 ~~~-~~~~~~~~~~~~g~~~~~ 195 (256)
... ....+.+.....||....
T Consensus 142 RRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred cccchHHHHHHHHHhceeEEEe
Confidence 332 334555666666765443
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-06 Score=63.20 Aligned_cols=94 Identities=27% Similarity=0.277 Sum_probs=63.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025180 72 QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 72 ~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+||.+++++.+++++...++.. ++++.+-.....-...+++|+++.|.-|.+-.+..... .-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T------------~~ 68 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT------------KP 68 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--------------H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc------------Cc
Confidence 58999999999999999999988754 77776655543322224899999999988776654321 12
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 150 AVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.....++.+.++|+|||++.++.....
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence 2356788999999999999998776443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-06 Score=70.51 Aligned_cols=186 Identities=16% Similarity=0.275 Sum_probs=108.3
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCE--EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025180 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVL--CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~--VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++. +++.++.+.|+.. ..-++-|+-+.+..-...++.. -+|||+|+.++ .-.++.+-.++...++|+++.
T Consensus 63 Dfgl~-veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci----~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 63 DFGLS-VEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCI----YPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred ccCce-EecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhh----HHhhhchhccceeeeeecccc
Confidence 34444 7899999999988 5555566666654322222322 48999999885 333444445689999999999
Q ss_pred HHHHHHHHHHHcCCcc--eEEEcchhhc-----hhhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCC
Q 025180 82 AVEVTRKTLEAHNVHA--DLINTDIASG-----LEKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGEN 147 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~~--~~~~~d~~~~-----~~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~ 147 (256)
.+..|..|+.+|++.. .+++....+. .....+..||+.+|||||+....+.. ....+.....++..
T Consensus 138 s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~ 217 (419)
T KOG2912|consen 138 SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQ 217 (419)
T ss_pred ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchh
Confidence 9999999999998765 3333322211 11112345999999999998733211 11222222233211
Q ss_pred ------cH-HHHHHHHHHHhhccccCeEEEEEEeC-CCCHHHHHHHHHHcCCcEEEE
Q 025180 148 ------GR-AVIDKILPSADKLLSKRGWLYLVTLT-ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 148 ------~~-~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 196 (256)
|. .+..+++.... .|+.+=+.|-++.+ ......+...+.+.|.....+
T Consensus 218 e~v~eggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~i 273 (419)
T KOG2912|consen 218 EFVSEGGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKI 273 (419)
T ss_pred HHHhhccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHHcCCceEEE
Confidence 11 12223333322 34555555544432 234557788888888654433
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=70.90 Aligned_cols=94 Identities=6% Similarity=-0.110 Sum_probs=69.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc---eEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA---DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~---~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. +. +|+.+||++++++.+++-+... +++. +++. . ......++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~---~~~~~~~~ 139 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--Q---LLDLDIKK 139 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--h---hhhccCCc
Confidence 56799999999999986666553 54 9999999999999999955432 2222 4433 1 11212368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+||++..| -..+.+.+.+.|+|||+++.
T Consensus 140 fDVIIvDs~~--------------------------~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 140 YDLIICLQEP--------------------------DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCEEEEcCCC--------------------------ChHHHHHHHHhcCCCcEEEE
Confidence 9999998432 24667889999999999998
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=69.53 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=75.8
Q ss_pred HHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc-
Q 025180 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG- 107 (256)
Q Consensus 30 ~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~- 107 (256)
.+.+.+..+...++.+|||+||++|.++-.+.+.. .+.+.|+|+|+.+.. ..+. ..+++|+.+.
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEE
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc-----------cccceeeeecccchhh
Confidence 34444443333366999999999999987776653 245799999998871 1111 3333443221
Q ss_pred ----hhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025180 108 ----LEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 108 ----~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
..... .+.+|+|+|+.-........ .... .........+..+...|++||.+++-........
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~d~~---------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~ 146 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRN-IDEF---------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE 146 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHH-SSHH---------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchh-hHHH---------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH
Confidence 11211 26899999986222111100 0000 0112234445566788999998887554433334
Q ss_pred HHHHHHHHcCCcEEEEEec
Q 025180 181 QICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~ 199 (256)
++...+....-.+..+.+.
T Consensus 147 ~~~~~l~~~F~~v~~~Kp~ 165 (181)
T PF01728_consen 147 ELIYLLKRCFSKVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHHEEEEE-T
T ss_pred HHHHHHHhCCeEEEEEECc
Confidence 6666666532233444443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=70.24 Aligned_cols=134 Identities=19% Similarity=0.149 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhhccccc-CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc
Q 025180 24 SFALVDALLADRINLVE-HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~-~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~ 102 (256)
+..+++|+.+....... ....++|||||-+....+.. .+-..|+.||+++. ...+.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-------~~~fdvt~IDLns~--------------~~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-------SGWFDVTRIDLNSQ--------------HPGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc-------cCceeeEEeecCCC--------------CCCceee
Confidence 78899999887643221 13479999999977653221 22346999999872 1267778
Q ss_pred chhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE-----EEEEEeCC
Q 025180 103 DIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW-----LYLVTLTA 176 (256)
Q Consensus 103 d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 176 (256)
|+.+...+ ...++||+|.+.......+++. -...++..+++.|+|+|. ++++.|..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~------------------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPK------------------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHH------------------HHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 88776432 3457899999976655554432 256889999999999999 99988743
Q ss_pred C-------CHHHHHHHHHHcCCcEEEE
Q 025180 177 N-------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 ~-------~~~~~~~~~~~~g~~~~~~ 196 (256)
. ..+.+..+|...||.....
T Consensus 153 Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 153 CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 2 3457788999999986554
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.1e-07 Score=70.33 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=88.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc-eEEEcchhhchhhhcC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA-DLINTDIASGLEKRLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~-~~~~~d~~~~~~~~~~ 113 (256)
+...+.|||||-|.+++.++.. +|+..+.|.||-...-+..+++|.... ..+ .+...+....++.++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~----fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPK----FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhcccc----CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 4578999999999988777776 999999999999999999999888754 333 6777777777665432
Q ss_pred -CCc--cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 114 -GLV--DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 -~~f--D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+.. +..+..-|.+..... . .......++.+..-+|++||.++.++............+++..
T Consensus 136 kgqLskmff~fpdpHfk~~kh-------k--------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKH-------K--------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred hcccccceeecCChhHhhhhc-------c--------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 222 333222233211111 1 1112356788888899999999998765555555555555555
Q ss_pred C
Q 025180 191 Y 191 (256)
Q Consensus 191 ~ 191 (256)
.
T Consensus 201 l 201 (249)
T KOG3115|consen 201 L 201 (249)
T ss_pred H
Confidence 4
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=74.27 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=98.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.+|+|+.....+++.+... ..++..|.|+.||+|.+.+.....+........++|.|..+.++..++.|+..++.
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~-----~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGK-----KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred eeeCcHHHHHHHHHHhccC-----CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 3667754444433322111 12567999999999999876554432001125799999999999999999887765
Q ss_pred cc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc-cc-cccchhhhcCCC--CcHHHHHHHHHHHhhccccCeE
Q 025180 96 HA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE-VG-REGIASAWAGGE--NGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 96 ~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
.. ....+|-...........||.|++||||...-... .. ......+|..+. .--..=..++..++..|++||+
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 42 33344433221111235699999999996532111 00 111122222110 0001123567777889999999
Q ss_pred EEEEEeCCC-----CHHHHHHHHHHcCCc
Q 025180 169 LYLVTLTAN-----DPSQICLQMMEKGYA 192 (256)
Q Consensus 169 l~~~~~~~~-----~~~~~~~~~~~~g~~ 192 (256)
..++.+..- ....++..+..++..
T Consensus 351 ~aiI~~~gvl~~~~~e~~ir~~lL~~~~~ 379 (501)
T TIGR00497 351 AAIVCFPGILYREGKEQTIRKYLVDQNFV 379 (501)
T ss_pred EEEEecCCcccCCCchHHHHHHHHHcCcE
Confidence 887765332 233566666666654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-07 Score=64.86 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
||+|+..|..++.+++.+.... ..+++++|..+. .+.+++.++..+.. .+++.++..+.+..+...++|+|+.+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999998888887764321 147999999995 33344444434443 3899999988776654579999999643
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ........++.+.+.|+|||++++
T Consensus 79 H----------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 H----------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C----------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 122356678889999999999887
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-05 Score=60.39 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=96.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+.+++|+||--+.++.++.+. ++-..++++|+++..++.|.+++..+++.. ++..+|....+.. +..+|.|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~----~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN----NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc----CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc--cCCcCEE
Confidence 4566999999999998887776 666789999999999999999999988764 6777776555432 3479988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.. |+.| .....++++..+.|+.--++++ .+.....+++.++...+|..+....-
T Consensus 90 vIA----------------------GMGG-~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 90 VIA----------------------GMGG-TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred EEe----------------------CCcH-HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhCCceeeeeeee
Confidence 772 2222 3467888888888876656666 44566889999999999987554433
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.2e-07 Score=69.19 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.+.|+|+|+|.+++-++... -+|+++|.+|...+.|.+|+..+|..+ +++.+|+.+. .+ +..|+|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y--~f--e~ADvvi 101 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY--DF--ENADVVI 101 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--cc--cccceeH
Confidence 34889999999999888777752 289999999999999999998888877 9999999887 33 5789999
Q ss_pred E
Q 025180 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
|
T Consensus 102 c 102 (252)
T COG4076 102 C 102 (252)
T ss_pred H
Confidence 9
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.4e-06 Score=68.34 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+.. .++..|||+|+|+|.++..+++.+ .+++++|+++..++..++.+. ..-..+++.+|+
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh-hcccceeeecch
Confidence 5666777776642 478999999999999999988872 489999999999999888664 222348999999
Q ss_pred hhchhhh-cCCCccEEEECCCCC
Q 025180 105 ASGLEKR-LAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~-~~~~fD~Ii~npP~~ 126 (256)
.+..... .......|++|.||.
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 8875431 234677999999984
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=68.48 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=97.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh-------hhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE-------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~-------~~~ 112 (256)
+++.+|||+|+..|.-++.+.+.+........|++=|.++..+......+......+ .+...|+..... +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 689999999999999998888887543223489999999999988888775544333 344444332211 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhh-hcCCC--CcHHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHH
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASA-WAGGE--NGRAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQM 186 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~ 186 (256)
...||-|+|+-|-........ ....... |.... .-......++....++||+||+++.++++.+. ...+.+++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk-~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRK-NPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhcceeEEecccCCCccccc-CchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 256999999998766533221 1111111 32221 11224568899999999999999999987653 33556666
Q ss_pred HHcC
Q 025180 187 MEKG 190 (256)
Q Consensus 187 ~~~g 190 (256)
+..+
T Consensus 313 ~~~~ 316 (375)
T KOG2198|consen 313 QKVG 316 (375)
T ss_pred HHhc
Confidence 6654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-05 Score=66.81 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchh
Q 025180 28 VDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~ 105 (256)
+..++.++. .++...+.+|||+|||+|..+.++...... -..++++|.|+.|++.++..+....... .....+..
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh
Confidence 344555553 234457889999999999987777666431 2379999999999999888665332111 11111111
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HH
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQ 181 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~ 181 (256)
....+. ...|+|++.......++ .....+++.+.+.+++ .+++++++.... .+
T Consensus 95 ~~~~~~--~~~DLvi~s~~L~EL~~-------------------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~ 151 (274)
T PF09243_consen 95 RDFLPF--PPDDLVIASYVLNELPS-------------------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAE 151 (274)
T ss_pred cccccC--CCCcEEEEehhhhcCCc-------------------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHH
Confidence 111111 23499999655443332 1256788888877766 888888765433 35
Q ss_pred HHHHHHHcCCcEE
Q 025180 182 ICLQMMEKGYAAR 194 (256)
Q Consensus 182 ~~~~~~~~g~~~~ 194 (256)
+++.+.+.|+.+.
T Consensus 152 aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 152 ARDQLLEKGAHVV 164 (274)
T ss_pred HHHHHhhCCCceE
Confidence 5666666666543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-06 Score=63.42 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=48.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhh
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIAS 106 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~ 106 (256)
.|+|+|||.|.+++.++.. +++++++++|.++.+++.+++++..++... .+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999998888776 677799999999999999999999988754 666655544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-05 Score=64.07 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC---
Q 025180 24 SFALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--- 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--- 95 (256)
++.+.+.|++.+..+. .....+||-+|||.|.++.+++.. +..+.|.|.|--|+=...- -.|+.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~f--iLn~~~~~ 104 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNF--ILNHCSQP 104 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHH--HHcccCCC
Confidence 4556666666665442 245689999999999998888876 5689999999988543222 11110
Q ss_pred ---------------------------c-------------ceEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccc
Q 025180 96 ---------------------------H-------------ADLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVG 134 (256)
Q Consensus 96 ---------------------------~-------------~~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~ 134 (256)
+ ..+..||+.+.-.+. ..++||+|++. |+...
T Consensus 105 ~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDT----- 177 (270)
T PF07942_consen 105 NQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDT----- 177 (270)
T ss_pred CcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeec-----
Confidence 0 034444544443221 12568877775 33221
Q ss_pred cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC-----------CHHHHHHHHHHcCCcEEEE
Q 025180 135 REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN-----------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~-----------~~~~~~~~~~~~g~~~~~~ 196 (256)
...+-.+++.+.++|||||.-+=+-| ... ..+++...+...||+....
T Consensus 178 --------------A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 178 --------------AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred --------------hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 12367889999999999996543221 111 2468999999999987543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=60.85 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=58.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Ccc--eEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.+..+|+|+|||.|.++..++..+....++..|+|+|.++..++.+.+.....+ +.. .+..+++.+... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS---SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc---cCCC
Confidence 578999999999999999999866554578899999999999999999887766 322 444444433311 3456
Q ss_pred cEEEE
Q 025180 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 77766
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-05 Score=60.73 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=82.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hhh-cCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~-~~~ 114 (256)
.++..|+|+|+..|.++..+++.++ ++..|+|+|+.|-..-. ...++++|+.... ... ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~---~~~~ivavDi~p~~~~~----------~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG---AGGKIVAVDILPMKPIP----------GVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC---CCCcEEEEECcccccCC----------CceEEeeeccCccHHHHHHHHcCCC
Confidence 5789999999999999998888765 34469999998743211 1266777765442 222 234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+|+|++++.= +..... . .+...........++.+..+|++||.+++-.......+++...+.++.
T Consensus 111 ~~DvV~sD~ap-~~~g~~----~-----~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAP-NTSGNR----S-----VDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCC-CcCCCc----c-----ccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 47999997531 111100 0 011112223455677788899999999997777777788888887653
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=66.03 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=64.0
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+....++++|+|+++|||...-..... . . ..+....+....++.++.++|||||.+++.. +..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~-~----~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~-~~~ 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQG-R----T-IAGDKTDEWLQPACNEMYRVLKKDALMVSFY-GWN 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCC-c----c-cccccHHHHHHHHHHHHHHHcCCCCEEEEEe-ccc
Confidence 6789999998888888999999999999742110000 0 0 0111122446788999999999999888643 344
Q ss_pred CHHHHHHHHHHcCCcEE--EEEec
Q 025180 178 DPSQICLQMMEKGYAAR--IVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~--~~~~~ 199 (256)
....+...+.+.||... .++.+
T Consensus 76 ~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 76 RVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cHHHHHHHHHHCCCEEeeEEEEEC
Confidence 45566778888898753 35544
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=75.64 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred ccCCccccCCchHHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+..+--..-......++.|.+.++.+ ..+.-..+||+|||+|.++..+... .|+.+-+.+.-...++..+.
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--------~V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--------NVTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--------CceEEEcccccCCchhhhhh
Confidence 44443333344566777776666432 2234478999999999997554443 34444333332222222222
Q ss_pred -HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 92 -AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+.|++. +.+-+.....+++...||+|-|.-.... |... -.-+|-++.++|+|||.++
T Consensus 159 leRGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~i~--------------W~~~------~g~~l~evdRvLRpGGyfv 216 (506)
T PF03141_consen 159 LERGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCLIP--------------WHPN------DGFLLFEVDRVLRPGGYFV 216 (506)
T ss_pred hhcCcch--hhhhhccccccCCccchhhhhccccccc--------------chhc------ccceeehhhhhhccCceEE
Confidence 245543 2222222334667889999988322111 1111 0235778899999999999
Q ss_pred EEEeCCC
Q 025180 171 LVTLTAN 177 (256)
Q Consensus 171 ~~~~~~~ 177 (256)
++.+...
T Consensus 217 ~S~ppv~ 223 (506)
T PF03141_consen 217 LSGPPVY 223 (506)
T ss_pred ecCCccc
Confidence 9776543
|
; GO: 0008168 methyltransferase activity |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=65.53 Aligned_cols=166 Identities=12% Similarity=0.117 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH----------
Q 025180 26 ALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---------- 92 (256)
Q Consensus 26 ~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---------- 92 (256)
.++.+.+..+-... ..++.++||+|||.-...+ ..+ .++.+ .|+..|..+...+..++-+..
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~--lsa--~~~f~-~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~ 111 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQL--LSA--CEWFE-EIVLSDYSEQNREELEKWLRKEGAFDWSPFW 111 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGG--TTG--GGTEE-EEEEEESSHHHHHHHHHHHTT-TS--THHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhh--hhH--HHhhc-ceEEeeccHhhHHHHHHHHCCCCCCCccHHH
Confidence 45555555443222 2467899999999865311 111 11222 699999999988766553321
Q ss_pred ------cCC-----------c--c-eEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025180 93 ------HNV-----------H--A-DLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 93 ------~~~-----------~--~-~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
-|- . . .++..|+.+..+-. .+.+||+|++.... ......
T Consensus 112 ~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----------------E~a~~d 174 (256)
T PF01234_consen 112 KYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----------------ESACKD 174 (256)
T ss_dssp HHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----------------HHH-SS
T ss_pred HHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----------------HHHcCC
Confidence 110 0 1 56677776653211 12358988874221 111123
Q ss_pred HHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHHHHcCCcEEEEEe--cCCCCccEEEEEE
Q 025180 149 RAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQMMEKGYAARIVVQ--RSTEEENLHIIKF 211 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~l~~~ 211 (256)
.+.+...++.+.++|||||.++++..-.. ..+.+.+.+++.||.+..... .....+.++++.+
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a 254 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVA 254 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEE
Confidence 45688999999999999999998653211 356899999999998776664 2223344555554
Q ss_pred Ee
Q 025180 212 WR 213 (256)
Q Consensus 212 ~~ 213 (256)
+|
T Consensus 255 ~K 256 (256)
T PF01234_consen 255 RK 256 (256)
T ss_dssp EE
T ss_pred eC
Confidence 43
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00036 Score=55.32 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=111.7
Q ss_pred eeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 9 RLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+.+......|+-+.. ...|+..++.=+..++-+++.+||=+|..+|+-.-.++..+ +...++|+|.++......-
T Consensus 42 ~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv----~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 42 RIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIV----GEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred eeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhcc----CCCcEEEEEecchhHHHHH
Confidence 333444445666655 78899999888887777899999999999999766666663 3568999999999877655
Q ss_pred HHHHHcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 88 KTLEAHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
...... -+.-.+.+|+..+.. ...=+.+|+|+.+-..- + -.+-+..++...||+|
T Consensus 118 ~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp--------------------~---Qa~I~~~Na~~FLk~~ 173 (231)
T COG1889 118 DVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP--------------------N---QAEILADNAEFFLKKG 173 (231)
T ss_pred HHHHhC-CCceeeecccCCcHHhhhhcccccEEEEecCCc--------------------h---HHHHHHHHHHHhcccC
Confidence 444321 122566777765532 12235699999863210 0 1334567788899999
Q ss_pred eEEEEEEeCCC-----CHH----HHHHHHHHcCCcEEEE-EecCCCCccEEEEE
Q 025180 167 GWLYLVTLTAN-----DPS----QICLQMMEKGYAARIV-VQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~-----~~~----~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~ 210 (256)
|.++++....+ .++ +....+++.+|+...+ .......++..++.
T Consensus 174 G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 174 GYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVA 227 (231)
T ss_pred CeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEEE
Confidence 98777553221 222 2344566677876543 33444455555443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=63.48 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=68.4
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHH---
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEA--- 92 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~--- 92 (256)
+|-.. ....+..+++.+. -.++...+|+|||.|...+.++... ++ ..+|||+.+...+.|+.....
T Consensus 22 ~YGEi--~~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~-----~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 22 TYGEI--SPEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQT-----GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CGGGC--HHHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH-------SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred ceeec--CHHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHc-----CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 44443 2334444555543 3578999999999999988877663 23 499999999998888764432
Q ss_pred ----cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 93 ----HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 93 ----~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+.. .++.++|+.+... ...-...|+|++|---+ +.+ +..-|......||
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---------------------~~~-l~~~L~~~~~~lk 149 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---------------------DPD-LNLALAELLLELK 149 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----------------------HH-HHHHHHHHHTTS-
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc---------------------CHH-HHHHHHHHHhcCC
Confidence 3332 2778888876421 11114579999973211 011 3333455566788
Q ss_pred cCeEEEE
Q 025180 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
+|-+++.
T Consensus 150 ~G~~IIs 156 (205)
T PF08123_consen 150 PGARIIS 156 (205)
T ss_dssp TT-EEEE
T ss_pred CCCEEEE
Confidence 8888764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-06 Score=68.61 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+....++|+|||-|.+. ..+..++-+ +++-+|.|..|++.++..- .+++......+|-... ++.+.++|+||
T Consensus 71 k~fp~a~diGcs~G~v~----rhl~~e~ve-kli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~L--df~ens~DLii 142 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVK----RHLRGEGVE-KLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFL--DFKENSVDLII 142 (325)
T ss_pred hhCcceeecccchhhhh----HHHHhcchh-heeeeecchHHHHHhhccC-CCceEEEEEecchhcc--cccccchhhhh
Confidence 56689999999999964 443333333 7999999999999887632 2333335555664332 35678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+..-.+..++ +...+.+|+..|||+|.++-...+....
T Consensus 143 sSlslHW~Nd---------------------LPg~m~~ck~~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 143 SSLSLHWTND---------------------LPGSMIQCKLALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhhcc---------------------CchHHHHHHHhcCCCccchhHHhccccH
Confidence 8654332222 4566788899999999988765544433
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=59.06 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=89.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+...+... +.+ .+.++|+++.+++..+.|... .++.+|+.+.........+|+++..||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G~~-~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----GFE-IVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc----CCE-EEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999987666554 222 589999999999988887632 356667766543211357999999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
....+....... ..+..+ ..+..+++ +.+.++|. +++++.... ....+.+.+++.||.....
T Consensus 72 Cq~fS~ag~~~~------~~d~r~-~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 72 CQPFSIAGKRKG------FEDTRG-TLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred ChhhhHHhhcCC------CCCchH-HHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 876655321100 011111 12334443 33345676 333233221 2346777788889876443
Q ss_pred Ee------cCCCCccEEEEEEEec
Q 025180 197 VQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~~~ 214 (256)
.. ..+..++++++..+++
T Consensus 142 ~l~a~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 142 LLNASDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred EEEHHHcCCCCCCcEEEEEEEeCC
Confidence 32 2345677777766654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0003 Score=57.28 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=92.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
...|.+|- .+=...+++.+.- ..+++.|||+|+.||.|+-.+.+. + ...|+|+|..-..+.- .+. +.
T Consensus 56 ~~~yVSRG--~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~---kLR-~d 122 (245)
T COG1189 56 EQPYVSRG--GLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHW---KLR-ND 122 (245)
T ss_pred CcCccccH--HHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCH---hHh-cC
Confidence 34555552 3333455665542 358899999999999999888775 2 2489999987654432 111 11
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...|+....++...+..|+++|+--|. .+..++..+..+++++|.++...
T Consensus 123 ~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI------------------------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI------------------------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CcEEEEecCChhhCCHHHcccCCCeEEEEeehh------------------------hHHHHHHHHHHhcCCCceEEEEe
Confidence 122 44455665555544456889999975553 26788999999999998877644
Q ss_pred e-CCC--------------------CHHHHHHHHHHcCCcEEEEE
Q 025180 174 L-TAN--------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~-~~~--------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
. .+. ....+.+++.+.||....+.
T Consensus 179 KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 179 KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 2 211 11356666777788775544
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.3e-05 Score=59.23 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc-chhhchh------hhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT-DIASGLE------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~-d~~~~~~------~~~ 112 (256)
.|+.+|||+||..|.++.-+.+.. +|+..|.|||+-.-. .... .++.+ |+.+... ...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~---~p~g~v~gVDllh~~-----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRV---NPNGMVLGVDLLHIE-----------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhh---CCCceEEEEeeeecc-----------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 578999999999999987666654 488899999985421 1111 33333 4443321 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
.-.+|+|+++..-..+... .. ++....+.-..++......++|+|.++.-.........+.+.|.+..-.
T Consensus 134 ~r~VdvVlSDMapnaTGvr-~~---------Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-IR---------DHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN 203 (232)
T ss_pred CCcccEEEeccCCCCcCcc-hh---------hHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence 3568999997642211110 00 0000112233445556778899999998777777777788888765434
Q ss_pred EEEEEec
Q 025180 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+..+.+.
T Consensus 204 Vk~vKP~ 210 (232)
T KOG4589|consen 204 VKKVKPD 210 (232)
T ss_pred cEeeCCc
Confidence 4445544
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=64.55 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=83.5
Q ss_pred cCCccccCCc-hHHHHHHHHHhhccccc--CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 14 HPEVYEPCDD-SFALVDALLADRINLVE--HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 14 ~~~~~~p~~~-~~~l~~~l~~~~~~~~~--~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
.+-+|-|... .+-+.-.++..+..... ..+.+|||.-+|+|.=++-.++.+. ....|++-|+|+++++.+++|+
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~---~~~~v~~NDi~~~a~~~i~~N~ 94 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELA---GVDKVTANDISPEAVELIKRNL 94 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-S---SECEEEEEES-HHHHHHHHHHH
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcC---CCCEEEEecCCHHHHHHHHHhH
Confidence 4558888766 22222222111111111 2457999999999998777777643 1247999999999999999999
Q ss_pred HHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 91 EAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 91 ~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
..|++.. ++.+.|+...+. .....||+|=.+| |.. ...+++.+.+.++.||
T Consensus 95 ~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDlDP-fGS------------------------p~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 95 ELNGLEDERIEVSNMDANVLLY-SRQERFDVIDLDP-FGS------------------------PAPFLDSALQAVKDGG 148 (377)
T ss_dssp HHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE---SS--------------------------HHHHHHHHHHEEEEE
T ss_pred hhccccCceEEEehhhHHHHhh-hccccCCEEEeCC-CCC------------------------ccHhHHHHHHHhhcCC
Confidence 9999876 677889887763 2357899998764 321 3577888889999999
Q ss_pred EEEEEE
Q 025180 168 WLYLVT 173 (256)
Q Consensus 168 ~l~~~~ 173 (256)
.+.+..
T Consensus 149 ll~vTa 154 (377)
T PF02005_consen 149 LLCVTA 154 (377)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999954
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=65.55 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|++||||......... ...+. ...-...+..++..+.++|||||.+++... ..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~ 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL----IEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TE 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccc----ccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-ch
Confidence 7899999998766667899999999999742110000 00000 011123457889999999999999998643 32
Q ss_pred CHHHHHHHHHHcCCcE
Q 025180 178 DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~ 193 (256)
.... ...+.+.+|..
T Consensus 84 ~~~~-~~~~~~~~f~~ 98 (284)
T PRK11524 84 NMPF-IDLYCRKLFTI 98 (284)
T ss_pred hhhH-HHHHHhcCcce
Confidence 2222 34455566643
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=58.39 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++.+||++|-|-|.+. ..++++.|. .-+-+|-+|..++.+++..-...-+..+..+...+.+....++.||-|+
T Consensus 100 tkggrvLnVGFGMgIid----T~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIID----TFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHH----HHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 47899999999999953 444444554 7788899999999887653222222267778888888777788999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-+- |.. .-+....+.+.+.++|||+|++-+
T Consensus 175 yDT-y~e--------------------~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 175 YDT-YSE--------------------LYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eec-hhh--------------------HHHHHHHHHHHHhhhcCCCceEEE
Confidence 741 100 012355677788999999999887
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00044 Score=59.62 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=89.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEEEcchhhchhhhc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHN-----VHA---DLINTDIASGLEKRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~~~d~~~~~~~~~ 112 (256)
.-.+||-+|-|.|.-+.++.+ +|+ .+|+-+|++|+|++.++.+..... ..+ +++..|+.+++..-
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-----yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a- 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-----YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA- 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-----CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-
Confidence 458999999999996555444 563 579999999999999996543321 222 78899999987653
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CCCH---HHHHHHHHH
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-ANDP---SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---~~~~~~~~~ 188 (256)
...||.||.+.|=-..+.. +.-....+-.-+.+.|+++|.+++-..+ +..+ -.+.+-+++
T Consensus 363 ~~~fD~vIVDl~DP~tps~----------------~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSI----------------GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred cccccEEEEeCCCCCCcch----------------hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh
Confidence 4689999998763222221 1122456667788899999999873321 1112 245677788
Q ss_pred cCCcEE
Q 025180 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.|+...
T Consensus 427 AG~~~~ 432 (508)
T COG4262 427 AGYRVW 432 (508)
T ss_pred Ccceee
Confidence 887653
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=62.62 Aligned_cols=73 Identities=27% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|+|+|||.--+++..... .+++.++|+||+..+++....-+...+++.++...|+....++ ...|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~----~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~---~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE----APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK---EPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS----STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT---SEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc----CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC---CCcchhhH
Confidence 5899999999998876443322 5678999999999999999999998898888888888776443 67899988
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.2e-05 Score=64.15 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
....+|+|.|.|.++-.+.. ++|+ |-+++.+...+-.+..++. .| .+.+.+|.++..| +-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~----~fp~--ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P-----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS----KYPH--IKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP-----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH----hCCC--CceeecCHHHHHhhhhhhc-CC--cceecccccccCC-----CcCeEEEE
Confidence 48999999999998655444 3774 7788888777777666664 44 4667788777633 34699985
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-..++.++. ...++|++|++.|+|||.++++..
T Consensus 244 WiLhdwtDe-------------------dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDE-------------------DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChH-------------------HHHHHHHHHHHhCCCCCEEEEEec
Confidence 444443332 367999999999999999999775
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=64.13 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred cccceeeeccCCccccCC-c-hHHHHHHHHHhhcc-cccCCCC-EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025180 5 TAQIRLVSSHPEVYEPCD-D-SFALVDALLADRIN-LVEHHPV-LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~-~-~~~l~~~l~~~~~~-~~~~~~~-~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
...+.....-...|.||- + .+.+.+++.-.-.. ....+-. +++.+|||+..+...+.+. .--.|+.+|+|+
T Consensus 7 ~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~S~ 81 (482)
T KOG2352|consen 7 QLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDSSS 81 (482)
T ss_pred ccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccccH
Confidence 344455555567888884 3 55555553221100 0113445 9999999999876555443 223799999999
Q ss_pred HHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 81 YAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
..++.+...-........+...|+... .+.+++||+|+.-+-....-.++.. .+.. ......+.+++
T Consensus 82 V~V~~m~~~~~~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlDal~~de~a------~~~~-----~~v~~~~~eVs 148 (482)
T KOG2352|consen 82 VVVAAMQVRNAKERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLDALFEDEDA------LLNT-----AHVSNMLDEVS 148 (482)
T ss_pred HHHHHHHhccccCCcceEEEEecchhc--cCCCcceeEEEecCccccccCCchh------hhhh-----HHhhHHHhhHH
Confidence 999887654322112227788887665 4557899999985544332222211 0000 13567789999
Q ss_pred hccccCeEEEEEEe
Q 025180 161 KLLSKRGWLYLVTL 174 (256)
Q Consensus 161 ~~LkpgG~l~~~~~ 174 (256)
++|++||+.+.++.
T Consensus 149 rvl~~~gk~~svtl 162 (482)
T KOG2352|consen 149 RVLAPGGKYISVTL 162 (482)
T ss_pred HHhccCCEEEEEEe
Confidence 99999999887765
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=61.58 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=78.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..+|+|.-+|||.=+|-++... +...++.-|+||++++.+++|+..| +.+..+++.|+...+... ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~----~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET----GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc----CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEec
Confidence 7999999999999877777663 3348999999999999999999999 455577778888776552 368999866
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+| |.. ..-+++.+.+.++.||.+.+..
T Consensus 128 DP-FGS------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DP-FGS------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCC------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 54 431 2356777777888899999854
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=60.82 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|.+.+++.+. ..++..++|.=+|.|.-+..+++.+ +++.|+|+|.++.+++.+++++...+-...++++++.
T Consensus 7 Vll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l----~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQL----GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 34455555553 2577899999999999998888764 3479999999999999999988755434488888887
Q ss_pred hchhhh---cCCCccEEEECC
Q 025180 106 SGLEKR---LAGLVDVMVVNP 123 (256)
Q Consensus 106 ~~~~~~---~~~~fD~Ii~np 123 (256)
+..... ...++|.|+.|.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHhcCCCcccEEEEec
Confidence 764322 235699999854
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=56.91 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.++||+||++|.++-.+.+. ++.|+|||..+-. . .+..+ -....+..|.....++ .+.+|.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~----~L~~~-~~V~h~~~d~fr~~p~--~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-Q----SLMDT-GQVEHLRADGFKFRPP--RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-H----hhhCC-CCEEEEeccCcccCCC--CCCCCEEE
Confidence 57899999999999998777665 5699999965522 1 12111 1236666776666443 46899999
Q ss_pred ECCC
Q 025180 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 cDmv 279 (357)
T PRK11760 276 CDMV 279 (357)
T ss_pred Eecc
Confidence 9753
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=58.59 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=89.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.|+-+| -.-..+++++.- . -|+ .|..+||++..++...+.+++.|.++ +.+..|+.+++++....+||+++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt--~-mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT--G-MPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc--C-CCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 567899888 444455444432 1 233 89999999999999999999999985 89999999998877778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeCCCCH--HHHHH-HHHHcCCc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLTANDP--SQICL-QMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~--~~~~~-~~~~~g~~ 192 (256)
.+||+- ...+..|+..-...||.- |++.+.....+.. .++++ .+.++|+-
T Consensus 227 TDPpeT----------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPET----------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhh----------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 999973 223667788888888877 7777754322211 14455 44455554
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=57.07 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCc--ceEEEcchhhchhhhcCCCcc
Q 025180 42 HPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.+.+|+=||||.=-++ +.+++. ..+++.|+++|+++++++.+++-+. ..++. ..++.+|..+...+ -..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCC
Confidence 3469999999965433 333332 1457789999999999999998877 33443 38999998776433 26899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.. ++.+... ....+++..+.+.++||..+++=
T Consensus 195 vV~lA------------------alVg~~~--e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLA------------------ALVGMDA--EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-------------------TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEh------------------hhccccc--chHHHHHHHHHhhCCCCcEEEEe
Confidence 99873 2222111 12578999999999999998873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0014 Score=56.56 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=88.8
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+++|+.||.|.+.+.+.+. +.+ .+.++|+++.+.+.-+.|.. ....+|+.+......+..+|+++..||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~~-~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GFE-VVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TEE-EEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc----CcE-EEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 6999999999988777665 222 69999999999999888875 777888887754322226999999998
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC------HHHHHHHHHHcCCcEEEEEe
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND------PSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~ 198 (256)
--..+..... .. ..+.++ .....+++-+ +.++|.-+++=..+.... ...+.+.+.+.||.+.....
T Consensus 71 CQ~fS~ag~~-----~~-~~d~r~-~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 71 CQGFSIAGKR-----KG-FDDPRN-SLFFEFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp -TTTSTTSTH-----HC-CCCHTT-SHHHHHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CceEeccccc-----cc-cccccc-hhhHHHHHHH-hhccceEEEecccceeeccccccccccccccccccceeehhccc
Confidence 7665553210 00 111111 1233444444 456786544422222211 35677888888987654332
Q ss_pred ------cCCCCccEEEEEEEecC
Q 025180 199 ------RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 199 ------~~~~~~~~~l~~~~~~~ 215 (256)
..+...+++++..+++.
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG
T ss_pred cHhhCCCCCceeeEEEEEECCCC
Confidence 12445677777766654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=49.76 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=65.6
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcC-CCccEEEECC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLA-GLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~fD~Ii~np 123 (256)
++|+|||+|... .+... . .....++++|+++.++..++......... ..+...|......++.. ..||++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL-G--GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHh-C--CCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999865 23332 1 11147999999999998855544332222 35666666552123223 4799994432
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+.... ....+..+.+.|+|+|.+++.....
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP----------------------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC----------------------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 211100 3677889999999999999866543
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=53.49 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=73.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CC--cceEEEcchhhchh-hhcCC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NV--HADLINTDIASGLE-KRLAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~--~~~~~~~d~~~~~~-~~~~~ 114 (256)
..+|||+|+|+|..++.++..+ ++++...|.-. .++..+.|...+ +. ...+...+...... .....
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-----GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-----cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 5679999999999998888863 46888888644 444444443332 22 22333333333221 11223
Q ss_pred C-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHHHHHHHHcCCc
Q 025180 115 L-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~g~~ 192 (256)
. +|+|++--+++.... ...++..+..+|..+|++++..+-.+. ..++...+.+..+.
T Consensus 161 ~~~DlilasDvvy~~~~---------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~ 219 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES---------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLK 219 (248)
T ss_pred CcccEEEEeeeeecCCc---------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhc
Confidence 3 899998666554333 356777888888899977776653332 23455555554443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0065 Score=51.38 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh---cCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR---LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~fD 117 (256)
+++...+|.--|.|..+..+...+ .+.++++|+|.++.+++.|++.+...+-...+++.++.+..... .-+++|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l---~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKL---PDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhC---CCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 678999999999999887777664 23567999999999999999998876655588888776654322 235677
Q ss_pred EEEE
Q 025180 118 VMVV 121 (256)
Q Consensus 118 ~Ii~ 121 (256)
-|+.
T Consensus 99 GiL~ 102 (314)
T COG0275 99 GILL 102 (314)
T ss_pred EEEE
Confidence 7777
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=49.99 Aligned_cols=138 Identities=21% Similarity=0.186 Sum_probs=80.4
Q ss_pred ecccccHHHHHHHHHhcccCCCceEEEEe--CCHHHHHH---HHHHHHHcCC-cc-eEEEcchhhchhhh--cCCCccEE
Q 025180 49 VGCGSGYVITSLALMLGQEVPGVQYIATD--INPYAVEV---TRKTLEAHNV-HA-DLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 49 lGcG~G~~~~~l~~~l~~~~~~~~v~giD--~~~~~i~~---a~~~~~~~~~-~~-~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
+|=|.-.++.++++.... ...++|+- ..++..+. +..|++...- .. -++..|+.+..... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 455555666666665432 44555554 44444433 3356554421 12 34455665554333 35789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHcCCcEEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 197 (256)
|.|.|+.-..... ..... ......+..++..+..+|+++|.+.+....... .-.+.+..++.|+......
T Consensus 80 iFNFPH~G~~~~~-~~~~i-------~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 80 IFNFPHVGGGSED-GKRNI-------RLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred EEeCCCCCCCccc-hhHHH-------HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 9999986411100 00000 012346789999999999999999997764432 2357777778888765544
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=62.55 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc---ccCC-----CceEEEEeCCHH---HHHHH-----------HHHHHH-----c
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLG---QEVP-----GVQYIATDINPY---AVEVT-----------RKTLEA-----H 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~---~~~~-----~~~v~giD~~~~---~i~~a-----------~~~~~~-----~ 93 (256)
+..-+|+|+|-|+|...+.+.+... +..+ ..+++++|..|- .+..+ +..... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999998887776652 1222 468999997552 22221 121111 1
Q ss_pred CC----------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 94 NV----------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 94 ~~----------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
++ ..++..+|+.+.+... ...||+++.++ |.+..+++ .....++..+.+++
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~-FsP~~np~-----------------~W~~~~~~~l~~~~ 196 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDG-FAPAKNPD-----------------MWSPNLFNALARLA 196 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCC-CCCccChh-----------------hccHHHHHHHHHHh
Confidence 21 1267788988876653 35799999974 22222221 12578999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025180 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
+|||++.-. +....+++.+...||++..
T Consensus 197 ~~~~~~~t~----t~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 197 RPGATLATF----TSAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred CCCCEEEEe----ehHHHHHHHHHHcCCeeee
Confidence 999999853 3567889999999998653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=61.10 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+++|+|||.|....+++. +.++.++|+|+++..+..+........++. .++.+|+.+. ++.+..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-----f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~--~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-----FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM--PFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHH-----hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC--CCCccccCc
Confidence 5677999999999998776665 356799999999988877766554444443 5677777665 455789999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+.-.-.+. .....+++++.+.++|||..+..
T Consensus 182 v~~ld~~~~~---------------------~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 182 VRFLEVVCHA---------------------PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEEeecccC---------------------CcHHHHHHHHhcccCCCceEEeH
Confidence 9873211111 12578899999999999999873
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.001 Score=56.71 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... +.+++.|||+.||+|+-++++.++ +-+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~----S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILAS----SNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHH
Confidence 456666655544 478999999999999988766554 3379999999999999999985
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=53.93 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=48.7
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.|..=...|++.++... ..++..|||+.||+|+.++++.+. +-..+|+|++++..+.+.+++..
T Consensus 144 hp~~kP~~l~~~~i~~~----s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 144 HPTEKPVTSLQPLIESF----THPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCcHHHHHHHHHHh----CCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHH
Confidence 34444456666666544 368999999999999988776654 34799999999999999988764
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=9.2e-05 Score=58.83 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=60.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.++||+|+|.|.++.-++-... .|++.|.|..|....++. +. +++ ...+.... +-++|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~y--nVl--~~~ew~~t--~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----NY--NVL--TEIEWLQT--DVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----CC--cee--eehhhhhc--CceeehHH
Confidence 4568999999999998766555422 599999999998766553 11 221 11122111 23689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc-CeEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK-RGWLYLV 172 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 172 (256)
|-- ...+. ...-++++.++.+|+| +|++++.
T Consensus 175 clN--------------lLDRc-------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLN--------------LLDRC-------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHH--------------HHHhh-------cChHHHHHHHHHHhccCCCcEEEE
Confidence 810 00011 1135789999999999 8988763
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=53.96 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|..=...|++.++... ..++..|||+.||+|+.++++.++ +-+.+|+|++++.++.|++
T Consensus 173 ~~~kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 3333456666666554 468999999999999988776654 3379999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00064 Score=61.16 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|+-+|.|-|-+.-+..+....-..+.+++++|.+|.++-..+. ....+++. +++..|+..+..+ .+..|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap--~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP--REQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc--hhhccchH
Confidence 5678888999998765555543333457899999999999877654 33334443 8999999988644 36889998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+- +.|.....+...+.|..+.+.|||+|+.+=
T Consensus 445 SE-------------------LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SE-------------------LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HH-------------------hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 72 222222223467889999999999998774
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00027 Score=58.91 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+..++|+|||.|-.+ .. .|.+.+.|.|++...+..+++. +.+ .+..+|+... ++.+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----~~~-~~~~ad~l~~--p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----GGD-NVCRADALKL--PFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----CCc-eeehhhhhcC--CCCCCccccchh
Confidence 4789999999999842 11 4778899999999888877652 111 5777888776 334688999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
--..++.+. ......+++++.+.|+|||...+....
T Consensus 110 iavihhlsT------------------~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLST------------------RERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhh------------------HHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 433332222 223578899999999999997775543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0066 Score=52.83 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=94.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~ 121 (256)
..+++|+.||.|.+.+.+... +.+ -+.++|+++.+++.-+.|... ..+...|+.+........ .+|+|+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----gf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----GFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----CCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEe
Confidence 468999999999987666554 322 589999999999988877642 367777877665443333 7999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHHcCCcEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~~g~~~~ 194 (256)
.||--..+..... ....++++. +-.-+.++...++| .+++++... ...+.+.+.|.+.||.+.
T Consensus 74 GpPCQ~FS~aG~r------~~~~D~R~~--L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 74 GPPCQDFSIAGKR------RGYDDPRGS--LFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred CCCCcchhhcCcc------cCCcCccce--eeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcch
Confidence 9998665543221 111222211 11123344456777 444434322 234678888889998632
Q ss_pred E-E-----EecCCCCccEEEEEEEec
Q 025180 195 I-V-----VQRSTEEENLHIIKFWRD 214 (256)
Q Consensus 195 ~-~-----~~~~~~~~~~~l~~~~~~ 214 (256)
. + +-..+..++++++-..++
T Consensus 144 ~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 144 FNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred HheeeHHhcCCCCCccEEEEEEecCc
Confidence 1 1 123456788888866653
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0041 Score=49.99 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~------~~ 113 (256)
+++.|+|+|.-.|.-++..|.++..-+++++|+|+|++..... ++.++.+.+ ..+++++|..+...-. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 6899999999999988888887765557789999999654432 112222332 2389999876543210 12
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
....+|+.+--+.+ .-....|+....++++|+++++
T Consensus 110 ~~~vlVilDs~H~~----------------------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTH----------------------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS--------------------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCCccH----------------------HHHHHHHHHhCccCCCCCEEEE
Confidence 34557776421110 0134556778999999999997
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0093 Score=46.29 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.+.+.. .+..+|+=+||=+-...+.- ...++.+++..|++..--.. +-+ .++.-|
T Consensus 12 ~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~-----~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA-----LDDTRIACLSTPSLYEALKK-----ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHh-----hcCCCccEEEEeecchHHhc--------CCc-ceEECC
Confidence 345555555532 35689999988776653222 12456789999998765332 111 345555
Q ss_pred hhhch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 104 IASGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 104 ~~~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
..... +....++||+||++|||.. .+.+.+....+..++|+++.+++++. ..+...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~---------------------~ec~~k~a~ti~~L~k~~~kii~~Tg-~~~~~~ 130 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS---------------------EECLTKTAETIRLLLKPGGKIILCTG-EEMEEL 130 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC---------------------HHHHHHHHHHHHHHhCccceEEEecH-HHHHHH
Confidence 54432 2223689999999999942 23356667778888899999998653 222333
Q ss_pred HHHHHHHcCCcEEEEEe
Q 025180 182 ICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~ 198 (256)
+.+.+ ++......+
T Consensus 131 ~~~ll---~~~~~~f~p 144 (162)
T PF10237_consen 131 IKKLL---GLRMCDFQP 144 (162)
T ss_pred HHHHh---CeeEEeEEe
Confidence 44444 555433333
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0068 Score=51.39 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------
Q 025180 25 FALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------ 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------ 93 (256)
+.+...+++++..+. .+...+||-+|||.|.++..++.. ++. +-|=|.|--|+=. . .+..|
T Consensus 128 d~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~----G~~--~qGNEfSy~Mli~-S-~FiLN~~~~~n 199 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL----GFK--CQGNEFSYFMLIC-S-SFILNYCKQEN 199 (369)
T ss_pred hhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh----ccc--ccccHHHHHHHHH-H-HHHHHhhccCC
Confidence 334444555554432 235689999999999999888876 443 3333655555421 1 11111
Q ss_pred CCcc-------------------------------------eEEEcchhhchhh-hcCCCccEEEECCCCCCCCCccccc
Q 025180 94 NVHA-------------------------------------DLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGR 135 (256)
Q Consensus 94 ~~~~-------------------------------------~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~ 135 (256)
.+.. ....||+.+.-.. ...+.||+|+.+ |+....
T Consensus 200 q~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa----- 272 (369)
T KOG2798|consen 200 QFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTA----- 272 (369)
T ss_pred cEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeech-----
Confidence 0100 1122444443221 112457877775 332211
Q ss_pred ccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC------------CHHHHHHHHHHcCCcEEE
Q 025180 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN------------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~------------~~~~~~~~~~~~g~~~~~ 195 (256)
...-++++.+..+|||||+-+=+.| ..+ ..+++...+...||+...
T Consensus 273 --------------~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 273 --------------HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred --------------HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 2366889999999999999774332 111 246788888888998644
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00071 Score=48.76 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
.||+||.||||............. ....+.+..+++.+.++| +|.+.++.|..- ....+++.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~-------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK-------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc-------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 699999999998766532211100 013345778899999888 999988887332 234556665543
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.029 Score=46.19 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=93.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.-+...|+.|.-|.++..+-....+.. .+ -.+...+|+|+|+..-+.-+...+.+++.-..++.+|++...++..
T Consensus 46 LFe~I~~LPEYYpTRtEaaIl~~~a~Eia-~~--~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t 122 (321)
T COG4301 46 LFEQITRLPEYYPTRTEAAILQARAAEIA-SI--TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT 122 (321)
T ss_pred HHHHHhccccccCchhHHHHHHHHHHHHH-Hh--hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH
Confidence 34445677888888877666555444432 22 2478999999999998877777777666667899999999988766
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcCCCccEEEE--CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025180 87 RKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVV--NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD~Ii~--npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.+... ++....+.+|....+....... --+++ .....+... +....|+.++...
T Consensus 123 a~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~Rl~~flGStlGN~tp-------------------~e~~~Fl~~l~~a 182 (321)
T COG4301 123 ATAILREYPGLEVNALCGDYELALAELPRGG-RRLFVFLGSTLGNLTP-------------------GECAVFLTQLRGA 182 (321)
T ss_pred HHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eEEEEEecccccCCCh-------------------HHHHHHHHHHHhc
Confidence 6655543 4455777888776654432222 22222 111111111 1256889999999
Q ss_pred cccCeEEEE
Q 025180 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
|+||-.+.+
T Consensus 183 ~~pGd~~Ll 191 (321)
T COG4301 183 LRPGDYFLL 191 (321)
T ss_pred CCCcceEEE
Confidence 999999887
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0087 Score=50.04 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCEEEEeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhc----CC
Q 025180 42 HPVLCMEVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRL----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G--~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~----~~ 114 (256)
.-...||+|||-- ...-++++.. .|+++|+=+|++|-.+.-++..+..+.-. ..++++|+.+.-.-+. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~---~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRV---APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhh---CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 3478999999944 3444555544 68999999999999999888877655421 2789999877632111 12
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
-+| .++.....+..++.+ ....++..+.+.|.||..+++++.+...
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~------------------dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDD------------------DPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGC------------------THHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cCCCCCCeeeeeeeeeccCCCcc------------------CHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 233 333433333222211 1578899999999999999998876653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0099 Score=47.07 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH----H--HHHcCCcc-eEEEcchhhchhhhc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK----T--LEAHNVHA-DLINTDIASGLEKRL 112 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~----~--~~~~~~~~-~~~~~d~~~~~~~~~ 112 (256)
-+++.+|+|+-.|.|.++.-++..++ |+..|+++-..+...-..+. + ..+....+ +.+-.+..... .
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg---p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~ 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG---PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---A 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC---CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---C
Confidence 36889999999999999988888764 55588887655442211111 1 11111111 33333333332 2
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D 178 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~ 178 (256)
.+..|+++.+--|+.... .++.. ....++...+++.|||||++.+..+... .
T Consensus 120 pq~~d~~~~~~~yhdmh~----------k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHN----------KNIHP----ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred CCcccccccchhhhhhhc----------cccCc----chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 356777777555443221 12211 1367788889999999999999775322 2
Q ss_pred HHHHHHHHHHcCCcEEE
Q 025180 179 PSQICLQMMEKGYAARI 195 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~ 195 (256)
...+.+..+..||....
T Consensus 186 ~a~V~a~veaaGFkl~a 202 (238)
T COG4798 186 PAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hHHHHHHHHhhcceeee
Confidence 23456666778887644
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0036 Score=46.00 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=53.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+++|+|+|.+.|.-++.++.. +. -.|+++|.++...+..+++++.+.+-. -+...++.. . =+.||+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----GA-K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~--Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----GA-SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E--YEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----Cc-cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c--CCCcceE
Confidence 47899999999999999988876 22 379999999999999999998775432 222232221 2 2578888
Q ss_pred EEC
Q 025180 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
+.+
T Consensus 97 ~iD 99 (156)
T PHA01634 97 VMD 99 (156)
T ss_pred EEE
Confidence 774
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=51.17 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=48.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---C-C------cceEEEcchhhchhhhcC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---N-V------HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~-~------~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||.=+|-|.-++-++.. |++|+++|-||......++-+... . + ..+++++|..+.+. ...
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcC
Confidence 59999999999998888764 458999999999887776544332 1 2 12899999988876 446
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|+++|=|-+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999987754
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=54.49 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+++.+. ..++..++|.=.|.|..+.++.+. .+++.++|+|.++++++.+++++....-...++++++.+.
T Consensus 9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~----~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK----LPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-----TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh----CCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 344444443 367889999999999988777776 5568999999999999999887764433447888887665
Q ss_pred hhh---h-cCCCccEEEEC
Q 025180 108 LEK---R-LAGLVDVMVVN 122 (256)
Q Consensus 108 ~~~---~-~~~~fD~Ii~n 122 (256)
... . ...++|.|+.+
T Consensus 82 ~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHccCCCccCEEEEc
Confidence 432 2 23579999983
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0072 Score=52.05 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=67.6
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
...+++|||+|.|.|.-..++-.. +|.. .++-++.|+..-+. -..+..|-... .....|+.....++. ...
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i----~Pdl~sa~ile~sp~lrkV-~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDI----WPDLKSAVILEASPALRKV-GDTLAENVSTEKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhccc----CCCchhhhhhccCHHHHHH-HHHHHhhcccccCCCCCCccchhccCCCccce
Confidence 356789999999999866554444 5542 46677777754333 33444443221 333444433322221 345
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
|++++.---..+. +. ...+...++.+..++.|||.++++.++....
T Consensus 186 ytl~i~~~eLl~d---------------~~---ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 186 YTLAIVLDELLPD---------------GN---EKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred eehhhhhhhhccc---------------cC---cchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 7777652111100 11 1124558999999999999999998766543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0081 Score=52.07 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHHc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.++.++++.+.......+-.++|+|.|+|.+...+...+.+-+| .+++.-+|+|++..+.-+++++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 444555666665544345678999999999998877777655555 689999999999988877776644
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0088 Score=51.82 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=64.8
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++++|+=.|+| .|..++.+++.+ +++|+++|.+++-.+.|++.- .+ .++...-.+..... .+.||+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lG----Ad-~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLG----AD-HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhC----Cc-EEEEcCCchhhHHh-HhhCcEE
Confidence 688999999887 345666666653 379999999999999888742 22 33333211122221 2349999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..-| ...+....+.|++||+++++-..
T Consensus 234 i~tv~----------------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG----------------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC----------------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 98533 24467778899999999997654
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0089 Score=50.33 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCc---ceEEEcchhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVH---ADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~---~~~~~~d~~~~~~~~~~~~f 116 (256)
.+++||=+|-|.|.+..+.++. . .- -++.-+|++...++..++-.... +.. ..++.+|...++.....++|
T Consensus 121 npkkvlVVgggDggvlrevikH-~--~v-e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-K--SV-ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-c--cc-cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 6799999999999976555543 1 11 26899999999999888776543 322 37888999888876667899
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+.+- +++ ..+.. ..+...+.+.+.+.||++|+++....
T Consensus 197 dVii~ds-----sdp----vgpa~--------~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDS-----SDP----VGPAC--------ALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEec-----CCc----cchHH--------HHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9999842 010 00111 22467788889999999999998653
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.035 Score=42.02 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcc
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d 103 (256)
.-++.++..+. ..+..+.+|+|+|.|.+-+++++... ..-+|+|++|=.+..++-..-+.++.. .+...|
T Consensus 59 eQv~nVLSll~---~n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR---GNPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc---CCCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 33445555443 46778999999999999888777632 357899999999998888777777654 777778
Q ss_pred hhhc
Q 025180 104 IASG 107 (256)
Q Consensus 104 ~~~~ 107 (256)
+...
T Consensus 131 lwK~ 134 (199)
T KOG4058|consen 131 LWKV 134 (199)
T ss_pred hhhc
Confidence 7665
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.15 Score=46.47 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=90.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh-----------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------- 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 110 (256)
..-+++|+.||.|.+.+.+-.. +.+ .|.++|+++.+.+.-+.|....+ ...++.+|+.+....
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a----G~~-~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI----GGQ-CVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc----CCE-EEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhh
Confidence 3569999999999987766543 222 57899999999888777742111 113445565554210
Q ss_pred ----hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------
Q 025180 111 ----RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------- 176 (256)
Q Consensus 111 ----~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 176 (256)
..-..+|+++..||--..+......... ...+.++..+ ..+..+++. .+.++|.-+ +++...
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg-~Lf~~~~ri-i~~~kPk~f--vlENV~gl~s~~~ 236 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQG-TLFFDVARI-IDAKRPAIF--VLENVKNLKSHDK 236 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccc-cHHHHHHHH-HHHhCCCEE--EEeCcHhhhcccc
Confidence 0012589999999887666543211100 0111112221 122333433 334567633 323211
Q ss_pred -CCHHHHHHHHHHcCCcEEE----------EE-e---cCCCCccEEEEEEEecC
Q 025180 177 -NDPSQICLQMMEKGYAARI----------VV-Q---RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~----------~~-~---~~~~~~~~~l~~~~~~~ 215 (256)
.....+...|.+.||.+.. +. . ..+..++++++..+++.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~~ 290 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDL 290 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCCc
Confidence 1234677778888988642 10 0 34567788888777643
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.065 Score=43.96 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|++.|+-=...+.-+++.+||=+|+++|.---.++..+ .|..-|+++|.++.+=+... |++....
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiV---GpeG~VYAVEfs~rsGRdL~-nmAkkRt 205 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIV---GPEGCVYAVEFSHRSGRDLI-NMAKKRT 205 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhccc---CCCceEEEEEecccchHHHH-HHhhccC
Confidence 4666655 67788887766666667899999999999998654455554 57779999999876543322 1111122
Q ss_pred cceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 96 HADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+..|+..+.. ...-.-+|+|+++-+.- + -..-+.-++...||+||-++++..
T Consensus 206 NiiPIiEDArhP~KYRmlVgmVDvIFaDvaqp------------d-----------q~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYRMLVGMVDVIFADVAQP------------D-----------QARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CceeeeccCCCchheeeeeeeEEEEeccCCCc------------h-----------hhhhhhhhhhhhhccCCeEEEEEe
Confidence 23445556655422 11123579998875421 0 012233466778999999998664
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0097 Score=53.68 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-..|+|..+|.|.|+.++... .|...-.-|..-.-.-..+...|+-... .|.-+.... .+.+||+|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGLIG~y--hDWCE~fsT-YPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGLIGVY--HDWCEAFST-YPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcccchhc--cchhhccCC-CCcchhhee
Confidence 34478999999999986444332 2444433333111111223333332211 233333322 257899998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
++.-|....+ ...+..++-++.++|+|+|.+++- ........+..++....|+........
T Consensus 433 A~~lfs~~~~------------------rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 433 ADGLFSLYKD------------------RCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhhhhcc------------------cccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 8765543222 123678899999999999999983 334445678888888888877666544
|
; GO: 0008168 methyltransferase activity |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0018 Score=56.93 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=55.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~ 109 (256)
+++..|.|+.||.|-+.+.+++. ++.|++-|+++++++..+.|+..|.+.. .+++.|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 68999999999999999888876 5899999999999999999999987653 788888877763
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.071 Score=46.14 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=84.8
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
|+|+.||.|.+...+.+. +-+ .+.++|+++.+++..+.|... .++.+|+.+..... -..+|+++..||-
T Consensus 1 vidLF~G~GG~~~Gl~~a----G~~-~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~-~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----GFK-CVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSD-IPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc----CCe-EEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhh-CCCcCEEEecCCC
Confidence 689999999987666554 222 467899999999988887531 45567777764321 1358999999997
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--------CCHHHHHHHHHHcCCcEEEEE
Q 025180 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
-..+....... + .+.++ .....+++- .+.++|. +++++... .....+...+++.||......
T Consensus 70 q~fS~ag~~~~-----~-~d~r~-~L~~~~~r~-i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~ 139 (315)
T TIGR00675 70 QPFSIAGKRKG-----F-EDTRG-TLFFEIVRI-LKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKV 139 (315)
T ss_pred cccchhcccCC-----C-CCchh-hHHHHHHHH-HhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEE
Confidence 66554321110 0 01111 122333333 3346775 33333221 123456777888898764432
Q ss_pred e------cCCCCccEEEEEEE
Q 025180 198 Q------RSTEEENLHIIKFW 212 (256)
Q Consensus 198 ~------~~~~~~~~~l~~~~ 212 (256)
. ..+..++++++-.+
T Consensus 140 l~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 140 LNAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred EcHHHCCCCCCccEEEEEEEe
Confidence 1 23456777776655
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0037 Score=56.06 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh--cCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~--~~~~f 116 (256)
.++.+|||.-|+||.-++-.++.+.. -.+|++-|.++.+++..++|+..|+... +..+.|+.-.+... ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 46789999999999998888887542 2479999999999999999999998765 77778876655432 24789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|=.+ ||.. ...||+.+.+.++.||.+++..
T Consensus 185 DvIDLD-PyGs------------------------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD-PYGS------------------------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC-CCCC------------------------ccHHHHHHHHHhhcCCEEEEEe
Confidence 999776 4432 2466888888899999999854
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0069 Score=49.25 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccEEEECCCCCCCCCc---cc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-HHHHHHHHcC
Q 025180 116 VDVMVVNPPYVPTPED---EV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~g 190 (256)
+|+|+++|||...... .. ........+ ...+..++.++.++|||||.+++......... ....+.+..|
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y------~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEY------LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHH------HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHH------HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 5999999999876651 10 000001111 22467788999999999999988654333222 3444444456
Q ss_pred -CcE
Q 025180 191 -YAA 193 (256)
Q Consensus 191 -~~~ 193 (256)
|..
T Consensus 75 ~~~~ 78 (231)
T PF01555_consen 75 GFFL 78 (231)
T ss_dssp T-EE
T ss_pred hhhe
Confidence 654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.023 Score=41.92 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCccEEEECCCCCC
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLVDVMVVNPPYVP 127 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~fD~Ii~npP~~~ 127 (256)
|.|..++.+++.+ +++|+++|.++...+.+++ .|.. .++.. |+.+....... ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~----~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKE----LGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHH----TTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHh----hccc-ccccccccccccccccccccccceEEEEecC---
Confidence 4577777777763 3799999999998888765 3322 22222 23333333333 37999987532
Q ss_pred CCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....++...++|+++|+++++....
T Consensus 68 ------------------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ------------------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2467888889999999999976443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.018 Score=51.72 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=83.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhh-----cCCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKR-----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~ 115 (256)
-+.++|=+|-|.|.++..+... .|...+++++++|.+++.|+.++..-.- .+.++-.|..+..... .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 4577888888999976555444 6778999999999999999998764332 2356656655554321 2467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHc
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~ 189 (256)
||+++.+-= .++ . ....+. ...-+...++......|.|.|.+++... +.....++...+++.
T Consensus 371 ~dvl~~dvd---s~d-~-------~g~~~p-p~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v 434 (482)
T KOG2352|consen 371 PDVLMVDVD---SKD-S-------HGMQCP-PPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV 434 (482)
T ss_pred CcEEEEECC---CCC-c-------ccCcCC-chHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence 999998410 000 0 000011 1112356788899999999999987443 344455666666553
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.061 Score=43.78 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC--C---ceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc------hh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP--G---VQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG------LE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~--~---~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~------~~ 109 (256)
.-++|+|+|...|.++..+++.|-...+ + ..|++||+.+-+ .++. --+++|+.+. +.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence 3589999999999999999988754212 1 249999997632 1111 3344554433 22
Q ss_pred hhcCCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 110 KRLAGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..++.|+|+|+.. +.+ +-++.+.+. ..+.+...|.-...+|||||.++--....+....+-..|..
T Consensus 110 hfggekAdlVvcDGA------PDvTGlHd~DEy~-----Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA------PDVTGLHDLDEYV-----QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCC------CCccccccHHHHH-----HHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 344568999999642 111 111111110 01233444556678899999998744444444555555544
Q ss_pred c
Q 025180 189 K 189 (256)
Q Consensus 189 ~ 189 (256)
.
T Consensus 179 f 179 (294)
T KOG1099|consen 179 F 179 (294)
T ss_pred H
Confidence 3
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.017 Score=51.18 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=46.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG 107 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~ 107 (256)
...|||+|+|||.+++-++.. +.+ .|+|+|.-..|.+.|++....||+.. +++.....+.
T Consensus 67 kv~vLdigtGTGLLSmMAvra----gaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRA----GAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred eEEEEEccCCccHHHHHHHHh----cCC-eEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 357999999999987665555 333 79999999999999999999999865 6665554443
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.066 Score=39.66 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=55.3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++..+|+.+.++.. ...||+|+.++ |.+..+++ .| ...++..+.+++++||++.- ++
T Consensus 34 ~L~~gDa~~~l~~l-~~~~Da~ylDg-FsP~~nPe--------lW---------s~e~~~~l~~~~~~~~~l~T----ys 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQL-DARFDAWYLDG-FSPAKNPE--------LW---------SEELFKKLARLSKPGGTLAT----YS 90 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-S-S-TTTSGG--------GS---------SHHHHHHHHHHEEEEEEEEE----S-
T ss_pred EEEEcHHHHHHHhC-cccCCEEEecC-CCCcCCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----ee
Confidence 78889988877653 47899999985 44433332 11 46889999999999998876 34
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCC
Q 025180 178 DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
....+++.+...||.+........+
T Consensus 91 ~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 91 SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp -BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 4677999999999997655544333
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.079 Score=46.53 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcC-CCccEE
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLA-GLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~fD~I 119 (256)
++.+|+=+|||. |.+++.+++. .....|+++|.+++.++.|++..........-.. +.......... ..+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~----~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKL----LGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEE
Confidence 445999999995 6666666666 3456899999999999999874321111100000 22111112222 369999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+-.-- ....+.++.++++++|.+.++.....
T Consensus 243 ie~~G---------------------------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 243 IEAVG---------------------------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred EECCC---------------------------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 86311 24578899999999999999765444
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.014 Score=48.75 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=46.8
Q ss_pred HHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHH
Q 025180 27 LVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 27 l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
++.++...+.... +..+.+|+|+|.|+|.++..+...+.+..| ..+++-+|+|+.+.+.-++++..
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4556666655442 223579999999999999888888876534 47899999999998887777654
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.042 Score=41.57 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
.+.+.+|+...... -..-|||+|-|+|.- -..|.+..|+-.|+++|-.-.+-..+ ......++.+|
T Consensus 14 QR~~L~~a~~~v~~----~~G~VlElGLGNGRT----ydHLRe~~p~R~I~vfDR~l~~hp~~------~P~~~~~ilGd 79 (160)
T PF12692_consen 14 QRDCLNWAAAQVAG----LPGPVLELGLGNGRT----YDHLREIFPDRRIYVFDRALACHPSS------TPPEEDLILGD 79 (160)
T ss_dssp HHHHHHHHHHHTTT------S-EEEE--TTSHH----HHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-
T ss_pred HHHHHHHHHHHhcC----CCCceEEeccCCCcc----HHHHHHhCCCCeEEEEeeecccCCCC------CCchHheeecc
Confidence 34566677776643 458899999999994 34455558888999999643322211 11123899999
Q ss_pred hhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHH--HHHHHHHHHhhccccCeEEEE
Q 025180 104 IASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA--VIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 104 ~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+.+.++. +.....-++-++.-. +.+..+ ....+-.-+..+|.|||+++-
T Consensus 80 i~~tl~~~~~~g~~a~laHaD~G~-------------------g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 80 IRETLPALARFGAGAALAHADIGT-------------------GDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHHHHH-S-EEEEEE-----------------------S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHhHHHHhcCCceEEEEeecCC-------------------CCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 9988765 333444444332111 111111 223334456789999999885
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.02 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~ 81 (256)
.+....+|+|||+|.+.--+.+. +..-+|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC------CCCccccccccc
Confidence 35678999999999964333322 446778886543
|
; GO: 0008168 methyltransferase activity |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.11 Score=46.05 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc-hhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD-IASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~f 116 (256)
.++.+||..|||. |..++.+++..+ -..++++|.+++..+.+++.. +... .....+ +.+...... ...+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 4678999999877 777666666532 226999999999988887642 1111 111121 222222222 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-.-..... ....-....+....+ ....+..+.+.|+++|+++.+.
T Consensus 256 D~vld~vg~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGS--PLHKAEQALLKLETD----RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCccccc--ccccccccccccccC----chHHHHHHHHHhccCCEEEEEc
Confidence 99987421000000 000000000000000 1345777888999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.58 Score=37.84 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh-hchhhhcCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
.-+.+++.+|+.|..+..++.....+..+.++++|-.++......++.+...+... +|+.++.. +.+..+ ..+|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCE
Confidence 55889999777654333333333333567899999999888888888887777653 88888744 444443 57899
Q ss_pred EEEC
Q 025180 119 MVVN 122 (256)
Q Consensus 119 Ii~n 122 (256)
++.+
T Consensus 119 ~vVD 122 (218)
T PF07279_consen 119 VVVD 122 (218)
T ss_pred EEEe
Confidence 9885
|
The function of this family is unknown. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.059 Score=50.62 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=66.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCc---------ceEEEcchhhchhhh--
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVH---------ADLINTDIASGLEKR-- 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~---------~~~~~~d~~~~~~~~-- 111 (256)
..|+=+|+|-|-+--...+.....+-..+|++||.|+.++.....+. ....+. .+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999765444444433344678999999966554444432 222331 389999998874321
Q ss_pred -------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc----CeE
Q 025180 112 -------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK----RGW 168 (256)
Q Consensus 112 -------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 168 (256)
.-+++|+||+- +.|.....+...+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-------------------LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-------------------LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-------------------hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 01368999882 122222223356778888888876 776
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=42.60 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=69.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
.-++.|+|.||-.|..++.++..+.... ++-++++.|.=+ ...+..++|+...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4578999999999987766655553221 344677777311 1234444454444
Q ss_pred CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 94 NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++ +..++.|.+.+.++.....++-++-.+.=+ -+.....|+.++..|.|||+++
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-----------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-----------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 43 227889998887765444555555443111 1234577889999999999999
Q ss_pred EEEeCCCC---HHHHHHHHHHcCCcEE
Q 025180 171 LVTLTAND---PSQICLQMMEKGYAAR 194 (256)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~g~~~~ 194 (256)
+ ..+.. ...+.+.+.+.|....
T Consensus 210 ~--DDY~~~gcr~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 210 F--DDYGHPGCRKAVDEFRAEHGITDP 234 (248)
T ss_dssp E--SSTTTHHHHHHHHHHHHHTT--S-
T ss_pred E--eCCCChHHHHHHHHHHHHcCCCCc
Confidence 8 33433 2245555566666543
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.32 Score=42.48 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=67.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHh----c--------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALML----G--------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHA---DLI 100 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l----~--------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~ 100 (256)
...-+|+|+||.+|..++.+...+ . +..|..+|+--|+-.+-....=+.+..+. ... ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466899999999999888776643 1 12345789999976555544433332221 111 333
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCc-ccccc-c----c-hhhhcC-CCCc----------HHHHHHHHHHHhhc
Q 025180 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGRE-G----I-ASAWAG-GENG----------RAVIDKILPSADKL 162 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-~~~~~-~----~-~~~~~~-~~~~----------~~~~~~~l~~~~~~ 162 (256)
-+.+...+ +++++.|++++....+..+.. +.... . . ...+.. .... ...+..+|+.=.+-
T Consensus 95 pgSFy~rL--fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 95 PGSFYGRL--FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp ES-TTS----S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 44444433 236899999996655554432 11111 0 0 011111 1010 12345566666677
Q ss_pred cccCeEEEEEEeCCC
Q 025180 163 LSKRGWLYLVTLTAN 177 (256)
Q Consensus 163 LkpgG~l~~~~~~~~ 177 (256)
|+|||+++++..+..
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 999999999776443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.79 Score=32.93 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.+++.. ..++.+|..+.. ....-.+.|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEG------VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT------SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcc------cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 78889999999988763 358999999999988776532 378889987653 2222357888887322
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
.+.....+-...+-+.|...++.... ..+..+.+.+.|....
T Consensus 72 --------------------~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 --------------------DDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADHV 113 (116)
T ss_dssp --------------------SHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SEE
T ss_pred --------------------CHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCEE
Confidence 01122334444556778878777442 2445677777776543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.3 Score=41.97 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=66.0
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE----cchhhchhhh-c
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN----TDIASGLEKR-L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~----~d~~~~~~~~-~ 112 (256)
+.+.+||=+|+| .|..++..|+.++ ..+|+.+|+++..++.|++ + |.+. .... .++.+..... .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 578999999999 4777777777743 4589999999999999988 3 3332 1111 1222222211 1
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...+|+.+-.-- .+..++.....++.||.++++..
T Consensus 240 ~~~~d~~~dCsG---------------------------~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 240 KKQPDVTFDCSG---------------------------AEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ccCCCeEEEccC---------------------------chHHHHHHHHHhccCCEEEEecc
Confidence 245888876311 45567777889999999777654
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.45 Score=40.91 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=58.4
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||..|+| .|..++.+++. .+++|++++.+++..+.+++ .+.+. ++.. +............+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~-----~G~~V~~~~~s~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKA-----MGAAVIAVDIKEEKLELAKE----LGADE-VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-----cCCEEEEEcCCHHHHHHHHH----hCCCE-EEcCCCcCHHHHHHHhcCCCc
Confidence 467788887765 35555555554 24679999999988877654 23321 1111 11111111224579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ....+..+.+.|+++|+++.+.
T Consensus 234 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVG---------------------------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEC
Confidence 99986311 1346777889999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.022 Score=48.08 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+..|+|+-+|-|++++...-.. ...+|+|+|.+|.+++..++++..|++.. .++.+|-....+ ....|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a----gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA----GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc----CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchhe
Confidence 45899999999999998444332 23489999999999999999999997654 666777655433 3567777
Q ss_pred EE
Q 025180 120 VV 121 (256)
Q Consensus 120 i~ 121 (256)
..
T Consensus 267 nL 268 (351)
T KOG1227|consen 267 NL 268 (351)
T ss_pred ee
Confidence 66
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.14 Score=44.83 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+.++.+|+|.+|-.|.-+..++..+. ....++|+|.+.+..+..++.+...|..+ +...+|+.....+..=..+..
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~---n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMR---NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhh---ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 35789999999999998888888754 35689999999999999999999888876 666889887522221245788
Q ss_pred EEECCCCCC
Q 025180 119 MVVNPPYVP 127 (256)
Q Consensus 119 Ii~npP~~~ 127 (256)
|+++|+..-
T Consensus 288 iL~DpscSg 296 (413)
T KOG2360|consen 288 ILVDPSCSG 296 (413)
T ss_pred EEeCCCCCC
Confidence 999987643
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=37.17 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
|..-||+-.+ +..+. .++-++.++|+.|.-....+.++. .+-+.++..+|....+... ++++=-+|+.+||
T Consensus 93 l~~YpGSP~l----A~~ll--R~qDRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP 165 (279)
T COG2961 93 LRYYPGSPLL----ARQLL--REQDRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP 165 (279)
T ss_pred cccCCCCHHH----HHHHc--chhceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC
Confidence 8889999886 33333 234589999999999999999886 2333488999977665432 2355789999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
|-... .++.+++.+.+.++ ++|+..+..|-.. ..++.+.++.
T Consensus 166 fE~~~---------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~-r~~~~~f~~~ 209 (279)
T COG2961 166 FELKD---------------------EYQRVVEALAEAYKRFATGTYAIWYPIKD-RRQIRRFLRA 209 (279)
T ss_pred ccccc---------------------HHHHHHHHHHHHHHhhcCceEEEEEeecc-hHHHHHHHHH
Confidence 94322 25666666666665 5777777666443 3344444433
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.16 Score=37.43 Aligned_cols=67 Identities=28% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|.|.-.- .|+.|.+. +..|+++|+++. .+ . . ..+++.-|+.+.....- ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~---vA~~L~~~--G~dV~~tDi~~~---~a----~-~--g~~~v~DDif~P~l~iY-~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPE---VAKKLKER--GFDVIATDINPR---KA----P-E--GVNFVVDDIFNPNLEIY-EGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--H---HHHHHHHH--S-EEEEE-SS-S--------------STTEE---SSS--HHHH-TTEEEEEE
T ss_pred CCCcEEEECcCCCHH---HHHHHHHc--CCcEEEEECccc---cc----c-c--CcceeeecccCCCHHHh-cCCcEEEE
Confidence 446999999998764 34444432 479999999998 11 1 1 23788888888654421 46899997
Q ss_pred -CCC
Q 025180 122 -NPP 124 (256)
Q Consensus 122 -npP 124 (256)
+||
T Consensus 77 iRPP 80 (127)
T PF03686_consen 77 IRPP 80 (127)
T ss_dssp ES--
T ss_pred eCCC
Confidence 555
|
; PDB: 2K4M_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.96 Score=41.77 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|+=+|||. |..++..++.+ ++.|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 4789999999995 55665666553 4589999999999888776
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.11 Score=43.67 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=45.8
Q ss_pred eeccCCccccCCc----hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025180 11 VSSHPEVYEPCDD----SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 11 ~~~~~~~~~p~~~----~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
.++.|++|.=..- +..+++.+.+.+..--...+++|||+|||+|...+.+... ....+...|.+.+.++
T Consensus 81 sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-----~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 81 SDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-----GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-----ccceeeeEecchhhee
Confidence 3455555543322 6667777665541111357899999999999988777665 1257888888888773
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.4 Score=35.53 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhh
Q 025180 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASA 141 (256)
Q Consensus 62 ~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~ 141 (256)
+.|.+.++...|+|+|.++..++.|.+ .|+..... .+ .+.. ..+|+||..-|
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~~-~~-~~~~-----~~~DlvvlavP----------------- 54 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEAS-TD-IEAV-----EDADLVVLAVP----------------- 54 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEEE-SH-HHHG-----GCCSEEEE-S------------------
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeecc-CC-HhHh-----cCCCEEEEcCC-----------------
Confidence 344444777899999999999887754 23332222 22 1221 35699998655
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc---CCcEEEEEecCCC
Q 025180 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK---GYAARIVVQRSTE 202 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~ 202 (256)
......+++++...+++|..+.=+.. ....+.+.+.+. +....-.++-.+.
T Consensus 55 -------~~~~~~~l~~~~~~~~~~~iv~Dv~S---vK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 55 -------VSAIEDVLEEIAPYLKPGAIVTDVGS---VKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp -------HHHHHHHHHHHHCGS-TTSEEEE--S----CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred -------HHHHHHHHHHhhhhcCCCcEEEEeCC---CCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 23467889999999999987775432 234455555543 3344555554433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.39 Score=38.20 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCC---------cceEE-EcchhhchhhhcCCCccE
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNV---------HADLI-NTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~---------~~~~~-~~d~~~~~~~~~~~~fD~ 118 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++..++-. .+.++ ..++. ..|..+.. ...|+
T Consensus 7 GlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-----~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-----KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-----HH-SE
T ss_pred CCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-----hccce
Confidence 6677777777777643 569999999999887765311 00010 01222 22333321 34688
Q ss_pred EEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-C-CCCHHHHHHHHHHcC
Q 025180 119 MVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-T-ANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~-~~~~~~~~~~~~~~g 190 (256)
++..- |+.. .+......+...++.+...|+++-.+++-+- . ....+.+..++++.+
T Consensus 80 ~~I~VpTP~~~----------------~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDE----------------DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBET----------------TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccc----------------cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 87644 3322 1112234578889999999999776666221 1 122234556666654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.97 Score=39.31 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|| |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. ++ ..++.+... ..+.+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~~~--~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MGADK-LVNPQNDDLDHYKA--EKGYF 236 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cCCcE-EecCCcccHHHHhc--cCCCC
Confidence 36788888876 4555444443332 244 69999999998887765 23321 11 112222111 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... ....+..+.++|++||+++++..
T Consensus 237 D~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---------------------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 99986311 12456677789999999998653
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.1 Score=39.88 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=67.3
Q ss_pred CCEEEEecccccHHHHHHHHHh----cc-------cCCCceEEEEeCCHHHHHHHHHHHHHc--------------CCcc
Q 025180 43 PVLCMEVGCGSGYVITSLALML----GQ-------EVPGVQYIATDINPYAVEVTRKTLEAH--------------NVHA 97 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l----~~-------~~~~~~v~giD~~~~~i~~a~~~~~~~--------------~~~~ 97 (256)
..+|+|+|||+|..++.+...+ .+ ..|+.+|+--|+-.+-....=+.+... +...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5799999999998776654432 11 235678888887654444333322210 0000
Q ss_pred eEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccc-------hhhhcCCCC----------cHHHHHHHHHHH
Q 025180 98 DLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGI-------ASAWAGGEN----------GRAVIDKILPSA 159 (256)
Q Consensus 98 ~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~l~~~ 159 (256)
-+..+-...+-. -++.++.+++.+..-.+..+......... ...+..... ....+..||+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 13457899999866555444311100000 000000000 011345566666
Q ss_pred hhccccCeEEEEEEeCC
Q 025180 160 DKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~ 176 (256)
.+-|+|||+++++..+.
T Consensus 224 a~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHhccCcEEEEEEecC
Confidence 77799999999977543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.85 Score=40.17 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. .....+..+.......+.+|
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCC
Confidence 46778888876 4455444444332 245 69999999998887754 33321 11112222222222234689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+-.-. ....+....+.|+++|+++++.
T Consensus 262 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAG---------------------------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEc
Confidence 9986311 1245667778999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.37 Score=41.04 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc--hhhhcC--C-CCcHHH-HHHHHHHHhhccccCeEEEE
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI--ASAWAG--G-ENGRAV-IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~--~~~~~~--~-~~~~~~-~~~~l~~~~~~LkpgG~l~~ 171 (256)
.++++|..+.+....+.++|+++.+|||...-......... ...+.. . ..-.+. ....+.++.++|+++|.+++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v 97 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGSLYV 97 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCCEEEE
Confidence 78889998887766667999999999998765411110000 000100 0 000112 45667888999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcE--EEEEecC
Q 025180 172 VTLTANDPSQICLQMMEKGYAA--RIVVQRS 200 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 200 (256)
... ......+...+++.||.. ..++.+.
T Consensus 98 ~~~-~~~~~~~~~~~~~~gf~~~~~iiw~k~ 127 (302)
T COG0863 98 IDP-FSNLARIEDIAKKLGFEILGKIIWKKP 127 (302)
T ss_pred ECC-chhhhHHHHHHHhCCCeEeeeEEEeCC
Confidence 654 455667788888888875 3445444
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.2 Score=38.75 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=+||| .+++.+.+.+.+...+.+|+++|.+++.++.++. .+. .. ..+ +. .. ...+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~-~~~--~~-~~--~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TY-LID--DI-PE--DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--ee-ehh--hh-hh--ccCCcEEE
Confidence 568899999874 4544443333221234589999999988887764 111 11 111 11 11 12489887
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. +. .....+....++|+++|+++++..
T Consensus 228 D~~G--------------------~~----~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--------------------GR----GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--------------------CC----ccHHHHHHHHHhCcCCcEEEEEee
Confidence 6311 10 013457778889999999988653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=3.4 Score=36.75 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=74.3
Q ss_pred cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 18 YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 18 ~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.++- -+.|.+.+.+.. ....|+=++=.-|.++..++.. .+. ...| +--.-...+.|+.+|+++
T Consensus 25 l~awdaade~ll~~~~~~~------~~~~~~i~nd~fGal~~~l~~~----~~~---~~~d-s~~~~~~~~~n~~~n~~~ 90 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDTE------IRGPVLILNDAFGALSCALAEH----KPY---SIGD-SYISELATRENLRLNGID 90 (378)
T ss_pred ccccccHHHHHHHHHhhcc------cCCCEEEEcCchhHHHHHHHhC----CCC---eeeh-HHHHHHHHHHHHHHcCCC
Confidence 444433 455555554432 1137899999999998877743 231 1123 222335568899999987
Q ss_pred ce-EEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 97 AD-LINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~~-~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+ +...+..+.+ ++.+|+|+.-.| +....++..+..+...|.+|+.++.....
T Consensus 91 ~~~~~~~~~~~~~----~~~~d~vl~~~P----------------------K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 91 ESSVKFLDSTADY----PQQPGVVLIKVP----------------------KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred cccceeecccccc----cCCCCEEEEEeC----------------------CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 53 4444444432 356999998555 22345778889999999999998765443
Q ss_pred CC
Q 025180 176 AN 177 (256)
Q Consensus 176 ~~ 177 (256)
..
T Consensus 145 k~ 146 (378)
T PRK15001 145 RD 146 (378)
T ss_pred CC
Confidence 33
|
|
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.9 Score=32.86 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc-cCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQ-EVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD 117 (256)
+.+.+|.=+.|-+=.+ -+.... ..|.-+|+-+|.+... ...| .+|+.=|...+. +....+.||
T Consensus 72 ~e~~rIacvS~Psly~----y~k~re~~~~~~~v~lfEfDkRF--------e~yg--~eFvfYDyN~p~dlp~~lk~~fd 137 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYV----YQKKREIEIPHDQVYLFEFDKRF--------ELYG--TEFVFYDYNCPLDLPDELKAHFD 137 (217)
T ss_pred ccCceEEEEeCchHHh----hhhhhhccCCceeEEEEEehhhH--------Hhcc--ceeEEeccCCCCCCHHHHHhccc
Confidence 4566776666655331 222111 1366789999987643 2233 256655655443 333457899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+||++|||... .-+.+--..+..+++++-++++++ +....+.+.+.+
T Consensus 138 iivaDPPfL~~---------------------eCl~Kts~tik~L~r~~~kvilCt-Geimee~~s~~l 184 (217)
T KOG3350|consen 138 IIVADPPFLSE---------------------ECLAKTSETIKRLQRNQKKVILCT-GEIMEEWASALL 184 (217)
T ss_pred EEEeCCccccc---------------------hhhhhhHHHHHHHhcCCceEEEec-hhHhHHHHHHHh
Confidence 99999999632 123344555667788888888743 233334444433
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.68 Score=39.37 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=50.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
....|..-...+.+.++... ..++..|||+-+|+|..++++... +-.++|+|++++-++.+.+++...
T Consensus 200 ~~~hp~~~P~~l~~r~i~~~----s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 200 KKLHPAQKPLALIERLIRDY----SFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ccCCCCCChHHHHHHHHHhc----CCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 34455444566666655543 368999999999999987765554 337999999999999999988754
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.029 Score=42.78 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=50.2
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
.+-||||.=.+ .|+|..+-++..++ ++...+. .....+.+.+.|+|++...+
T Consensus 6 kv~ig~G~~r~-----------npgWi~~d~ed~~~-vdlvc~A----------------s~e~~F~dns~d~iyaeHvl 57 (185)
T COG4627 6 KVKIGAGGKRV-----------NPGWIITDVEDRPE-VDLVCRA----------------SNESMFEDNSVDAIYAEHVL 57 (185)
T ss_pred EEEEecccccc-----------CCCceeeehhcccc-cchhhhh----------------hhhccCCCcchHHHHHHHHH
Confidence 46678887653 67888877766552 2322111 11123446788988773221
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
-+ .. .+--..+++.|++.|||||++-+..|..
T Consensus 58 EH------------lt-------~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 58 EH------------LT-------YDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HH------------Hh-------HHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 10 00 0113467899999999999999877644
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.67 Score=45.11 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=81.4
Q ss_pred ccccCCchHHHHHHHHHhhccc--------ccCCCCEEEEecccccHHHHHHHHH------hcccCCCceEEEEeCCHHH
Q 025180 17 VYEPCDDSFALVDALLADRINL--------VEHHPVLCMEVGCGSGYVITSLALM------LGQEVPGVQYIATDINPYA 82 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~--------~~~~~~~VLDlGcG~G~~~~~l~~~------l~~~~~~~~v~giD~~~~~ 82 (256)
||+| -..++.|+..-..+ ....+.+|||+.+|||.+-.-+... |.+++.+ .+++.||---+
T Consensus 816 VyTP----iEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~-eLhA~eIvLLs 890 (1518)
T COG4889 816 VYTP----IEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQK-ELHAFEIVLLS 890 (1518)
T ss_pred eecc----hhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHh-hhhHHHHHHHH
Confidence 7888 45555554443322 2346789999999999985444332 1223333 57777776666
Q ss_pred HHHHHHHHHHc-----C-Ccc--eEEEcchhhchh-----------------hhcCCCccEEEECCCCCCCCCcccc---
Q 025180 83 VEVTRKTLEAH-----N-VHA--DLINTDIASGLE-----------------KRLAGLVDVMVVNPPYVPTPEDEVG--- 134 (256)
Q Consensus 83 i~~a~~~~~~~-----~-~~~--~~~~~d~~~~~~-----------------~~~~~~fD~Ii~npP~~~~~~~~~~--- 134 (256)
+-.|.-|+... | .++ .+...|-++... ....-++-+|+.||||..-...+..
T Consensus 891 YYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~ 970 (1518)
T COG4889 891 YYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQ 970 (1518)
T ss_pred HHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccc
Confidence 65565555431 2 111 233333322221 1112347899999999764443211
Q ss_pred ---cccchh----hhcC-----CCC-cHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 135 ---REGIAS----AWAG-----GEN-GRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 135 ---~~~~~~----~~~~-----~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++..+. .+.. ..+ -.+.+.+.++-....++.+|++-|+..+
T Consensus 971 nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 971 NLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred ccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecC
Confidence 111111 1111 111 1123334455567889999999998753
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1 Score=39.41 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.|..++.+++.+ ++++++++.+++..+.+++. .|.+ .++.. ++.+........
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCC
Confidence 57889988887 3566666666652 56899999988877766532 2433 22221 232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++-.- + ...+..+.+.|+++|+++++.
T Consensus 228 gvD~v~d~v------------------------G----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNV------------------------G----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECC------------------------C----HHHHHHHHHHhccCCEEEEEC
Confidence 689998631 1 235677788999999998754
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.5 Score=36.46 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=61.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-.|+-.++ ..+. .++-+.+.+|+.+.-.+..++++... -...++..|..+.+... ...+=-+|+++||
T Consensus 62 l~~YPGSP~ia----~~ll--R~qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAIA----ARLL--REQDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHHH----HHHS---TTSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE---
T ss_pred cCcCCCCHHHH----HHhC--CccceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCC
Confidence 55666666653 2222 23558999999999999998887642 23489999988765432 1355689999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCc
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYA 192 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~ 192 (256)
|=...+ +..++..+...+| +.|++++..|-... .+.+.+.+++.+..
T Consensus 135 YE~~~d---------------------y~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~ 185 (245)
T PF04378_consen 135 YEQKDD---------------------YQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK 185 (245)
T ss_dssp --STTH---------------------HHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred CCCchH---------------------HHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence 943322 4555655555555 57887776764432 22344455555543
|
; PDB: 2OO3_A. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.77 E-value=4 Score=35.24 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025180 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+.+||=.|+ |.|..++.+++.+ ++ .|++++.+++..+.+++. .|.+ .++. .++.+.........+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~~~~~~~---lGa~-~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKCQLLKSE---LGFD-AAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHHh---cCCc-EEEECCCCCHHHHHHHHCCCCc
Confidence 378888775 4566666666652 45 799999988877766553 2433 2222 233332222223469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ...+..+.+.|+++|+++.+.
T Consensus 226 d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVG----------------------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCC----------------------------cHHHHHHHHHhccCCEEEEEe
Confidence 99986311 122467788999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.82 Score=40.49 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=65.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcc---eEE-EcchhhchhhhcCCCc
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHA---DLI-NTDIASGLEKRLAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~---~~~-~~d~~~~~~~~~~~~f 116 (256)
.+|-=+ |-|.+++.+|.+.+++ +..|+|+||++..++....--. +..+.. ..+ .+.+.....+..-...
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~ 85 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKEC 85 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccC
Confidence 444444 5566777777776543 5689999999999987543110 000000 011 1111111111111356
Q ss_pred cEEEEC-C-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE--eCCCCHHHHHHHHHH
Q 025180 117 DVMVVN-P-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT--LTANDPSQICLQMME 188 (256)
Q Consensus 117 D~Ii~n-p-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~~ 188 (256)
|+++.. | |+.. +++++ +....+..+.+...|++|-.+++-+ ++... +++...+.+
T Consensus 86 dv~iI~VPTPl~~-------~~~pD---------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT-e~v~~plle 144 (436)
T COG0677 86 DVFIICVPTPLKK-------YREPD---------LSYVESAARSIAPVLKKGDLVILESTTPPGTT-EEVVKPLLE 144 (436)
T ss_pred CEEEEEecCCcCC-------CCCCC---------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHHHHHh
Confidence 776653 3 3222 12222 3457888999999999999888843 22333 444444444
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.9 Score=37.39 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+| .++..+++.+. .-+++|+++|.++.....+.. .+. .+ .++.+.. ...|+|+
T Consensus 252 LaGKtVvViGyG--~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G~--~v--v~leEal-----~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYG--DVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EGY--QV--LTLEDVV-----SEADIFV 314 (477)
T ss_pred cCCCEEEEECCC--HHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cCC--ee--ccHHHHH-----hhCCEEE
Confidence 368999999888 45555666554 336789999999865433322 122 11 1332321 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...- ..-+.......+|+||+++.+..
T Consensus 315 ~tTGt--------------------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGN--------------------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCC--------------------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 84320 11223667778999999998654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.42 E-value=4.1 Score=35.13 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++. |++++.+++..+.+++ .+.+ .++...- .+...... ...+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LGAD-FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCC-EEEcCCcchHHHHHHHhCCCCC
Confidence 46788888875 5565555554443 2456 9999999888777654 2332 2221110 11111111 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... -...+....+.|+++|+++++..
T Consensus 233 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG---------------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99986321 12345666788999999987543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.7 Score=34.53 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=57.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+||-.|+|+ |...+.+++. .+.++++++.+++..+.+++. +... .....+..........+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~-----~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA-----AGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4678999999886 4444444433 246899999998877766442 2111 11111111111011235699
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++.+-. ....+..+.+.|+++|+++.+..
T Consensus 204 ~vi~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVG---------------------------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCC---------------------------CHHHHHHHHHhcccCCEEEEEcc
Confidence 9987422 11346667788999999987653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.46 Score=39.56 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|.+.++. .+..+++|+.||+|.+++.+.. +...++.-|+++..+...+.
T Consensus 7 ~l~~~I~~~ip~---~~~~~~vepF~G~g~V~~~~~~------~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 7 KLAKWIIELIPK---NKHKTYVEPFAGGGSVFLNLKQ------PGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---------SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCEEEEEecchhHHHHHhcc------cccceeeeechHHHHHHHHH
Confidence 456777777642 1789999999999998655443 24489999999988776653
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=91.25 E-value=6.7 Score=32.20 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=52.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
+++|=.| |+|.++..+++.+.++ +++|+.++-+++..+.+...+...+....++..|+.+... .. ..++
T Consensus 3 k~~lItG-as~giG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVED--GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5666666 5566777788877654 5689999988877766666555444334667777765421 10 1256
Q ss_pred ccEEEECCCCC
Q 025180 116 VDVMVVNPPYV 126 (256)
Q Consensus 116 fD~Ii~npP~~ 126 (256)
+|.+|.|-.+.
T Consensus 80 id~vi~~ag~~ 90 (256)
T PRK08643 80 LNVVVNNAGVA 90 (256)
T ss_pred CCEEEECCCCC
Confidence 89999987543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.3 Score=37.26 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcC-CC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~-~~ 115 (256)
.++.+||=.|+ |.++..+.+.... .++ .|+++|.+++..+.+++ .|.+ .++ ..+..+....... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FGAT-HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcCCCcCHHHHHHHHhCCCC
Confidence 46788998876 4454444443332 245 49999999988887754 3332 222 1222222222212 35
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-.-- -...+..+.+.|++||+++++..
T Consensus 246 ~d~vid~~g---------------------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVG---------------------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEECC
Confidence 899876210 12346667779999999988643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.10 E-value=7.1 Score=32.09 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ ++.++.++-++...+.+...+...+....++..|+.+... . . .-
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4688999994 555666777776643 5688889988777766555554333334566777664421 0 0 12
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+..+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 568999998754
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.8 Score=35.25 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEE-cchhhchhhh-cCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLIN-TDIASGLEKR-LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~-~d~~~~~~~~-~~~~fD 117 (256)
.++.+||=.|+ |.++..+++.+.. .++. |+++|.+++..+.+++ .+.+. ++. .+..+..... ....+|
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~-~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FGATA-LAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cCCcE-ecCchhhHHHHHHHhCCCCCC
Confidence 46788888876 4455555444332 2444 8999999888777665 23321 111 1111111111 123589
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++-.-. ....+..+.+.|+++|+++++.
T Consensus 190 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSG---------------------------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEec
Confidence 9976311 1345777788999999999865
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.91 Score=40.93 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025180 25 FALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
...+-.+..++.. .+...+..+.|+|.|.|.-.-.+... -+ ...-.++.||-+..|.+....+... +-.+ .++.
T Consensus 182 Ya~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~l-wr-~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~ 258 (491)
T KOG2539|consen 182 YALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLL-WR-QTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVR 258 (491)
T ss_pred hHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhh-cc-cccceeEeeccchHHHHHHHHhhcC-hhhcCchhcc
Confidence 3444445555543 33456788999998877643323332 11 1124699999999999888777653 1111 1111
Q ss_pred c-chhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 102 T-DIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 102 ~-d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
. .+.....+. ....||+|++..-.++..+. ..-.+....-+.....+||.++++..+....
T Consensus 259 ~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~-----------------~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 259 KLVFHRQRLPIDIKNGYDLVICAHKLHELGSK-----------------FSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred ccchhcccCCCCcccceeeEEeeeeeeccCCc-----------------hhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 1 222222222 23459999995443332221 1112333445667889999999998876655
Q ss_pred HHHHHHH
Q 025180 180 SQICLQM 186 (256)
Q Consensus 180 ~~~~~~~ 186 (256)
-+.....
T Consensus 322 ~e~l~ea 328 (491)
T KOG2539|consen 322 LELLTEA 328 (491)
T ss_pred hhhHHHH
Confidence 4443333
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.8 Score=37.13 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=51.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+||=+||| .+++.+.+.+.. . ++ .|.++|.+++.++.+... . ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G--~vG~~a~q~ak~-~-G~~~v~~~~~~~~rl~~a~~~----~----~i--~~~~~----~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHG--TLGRLLARLTKA-A-GGSPPAVWETNPRRRDGATGY----E----VL--DPEKD----PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCC--HHHHHHHHHHHH-c-CCceEEEeCCCHHHHHhhhhc----c----cc--Chhhc----cCCCCCEEE
Confidence 46678877764 444444443332 2 34 477889888777665431 1 11 11110 124689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. -...+..+.++|+++|+++++..
T Consensus 206 d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG---------------------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC---------------------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 7411 13456777889999999998653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=7.6 Score=31.54 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
..+++|=.|+ +|.++..+++.+.++ ++.|++++-++...+...+.+...+....++.+|+.+... ... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888884 677788888887654 5689999998876665555444333334677788765421 100 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|+++.+.-+.
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 4689999887543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=4.9 Score=36.76 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+=+|+|. ++..+++.+. ..+++|+.+|.++.....+.. .|. . ..++.+.. ...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G~--~--~~~leell-----~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALR--GFGARVVVTEIDPICALQAAM----EGY--Q--VVTLEDVV-----ETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cCc--e--eccHHHHH-----hcCCEEE
Confidence 4789999999885 6666777765 346789999998775433322 122 1 12333321 4689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+... ...++ ......+|||++++-+... ..+.....+...+
T Consensus 315 ~atG---------------------------t~~iI~~e~~~~MKpGAiLINvGr~--d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATG---------------------------NKDIITLEHMRRMKNNAIVGNIGHF--DNEIQVAELEAYP 356 (476)
T ss_pred ECCC---------------------------cccccCHHHHhccCCCcEEEEcCCC--chHHhHHHHHhcC
Confidence 8521 12334 3567789999999986543 2233334455443
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.42 E-value=1 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=28.2
Q ss_pred Eeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH--HHHcC
Q 025180 48 EVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT--LEAHN 94 (256)
Q Consensus 48 DlGcG~G--~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~--~~~~~ 94 (256)
|+|+..| .....+... ...++..|+++|.+|..++..+.+ +..+.
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 544433211 125678999999999999999999 66663
|
; PDB: 2PY6_A. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=7.3 Score=31.51 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ ++.|++++-+++..+.+.+.+...+ ...++..|+.+... .. .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKE--GAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788888885 66677777776643 6689999998877665544443322 23666777664321 00 01
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+|.++.+..-......... ......+.... .....+++.+.+.++++|.++++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~-~~~~~~~~~n~---~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEF-SGLEEMLTNHI---KIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHH-HHHHHHHHHhc---hHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457989887643221110000 00000010000 0122345566667778888777553
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=7.6 Score=32.63 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.||=.|++ ++.++.++++.+.+. +++|+.++.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888887 356788888887654 568888888754333333332322322 456677665421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 81 ~g~iDilVnnAG~~ 94 (274)
T PRK08415 81 LGKIDFIVHSVAFA 94 (274)
T ss_pred cCCCCEEEECCccC
Confidence 26799999987653
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.7 Score=38.49 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MGIT-DFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhCC
Confidence 56789998876 5555555554432 245 69999999988887754 3433 22221 122222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- -...+......+++| |+++++.
T Consensus 268 g~dvvid~~G---------------------------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAG---------------------------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 6999986311 124566777788887 9987754
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=3.5 Score=35.10 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.+++||=.|+ +|.++..+++.+.++ ++.|+.+..+.+ ..+...+.+...+....++.+|+.+... ..
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578888884 666677788877654 557777665432 2233333333334344667777765321 10
Q ss_pred cCCCccEEEECCCCCCCCC--cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTPE--DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+.+|++|.|.-+..... .+....+....+... ..-.-.+++.+.+.++++|+++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN---VYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 1247899999875432111 010000111111000 0012245566677778888887754
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.01 E-value=3.7 Score=35.84 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=54.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC---CHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI---NPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~---~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+| .++..+.+.+.. .++.|++++. ++...+.+++ .|... .....+..+ . . ....+
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~-~-~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAE-V-K-LVGEF 239 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhh-h-h-hcCCC
Confidence 467889888864 444444443332 2458999986 5666666553 33321 000111111 1 1 12468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. ....+....+.|+++|+++++..
T Consensus 240 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG---------------------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC---------------------------CHHHHHHHHHHccCCcEEEEEec
Confidence 98887311 12457778889999999987543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.94 E-value=4.2 Score=34.76 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
.++.+||=.|. |.|..++.+++. .++.+++++.+++..+.+++ .|.+ .++. .++.+.........
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~-----~G~~vi~~~~s~~~~~~l~~----~Ga~-~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKI-----KGCKVIGCAGSDDKVAWLKE----LGFD-AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHCCCC
Confidence 46778877764 455666666665 25689999988887777654 3432 2222 23322222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.- -...+....+.|+++|+++.+.
T Consensus 212 vd~vld~~----------------------------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDNV----------------------------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEECC----------------------------CHHHHHHHHHhhccCCEEEEEc
Confidence 89887621 0244677788999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.91 E-value=5 Score=34.44 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|. |.|..++.+++. .++++++++.+++..+.+++ .|.+ .++.. +..+........
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~-----~G~~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHhCCC
Confidence 46788887774 355555555554 35689999999887777643 3433 22221 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-. ...+....++|+++|+++.+.
T Consensus 207 gvdvv~d~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG----------------------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC----------------------------HHHHHHHHHHhCcCcEEEEec
Confidence 6899976311 123567788999999999754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=6.9 Score=32.39 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+++..+...+.+ +....++.+|+.+... .. .-
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4577887774 556777788877654 568999998876554433322 2233667777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|..+.
T Consensus 79 g~id~lv~~ag~~ 91 (261)
T PRK08265 79 GRVDILVNLACTY 91 (261)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.64 E-value=10 Score=34.24 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+|. ++..+++.+.. -+++|+.+|.++.....+.. .|. ++ .++.+. -..+|+|+
T Consensus 210 l~Gk~VlViG~G~--IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~----~G~--~v--~~l~ea-----l~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGYGD--VGKGCAQRLRG--LGARVIVTEVDPICALQAAM----DGF--RV--MTMEEA-----AELGDIFV 272 (425)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHh--CCCEEEEEcCCchhhHHHHh----cCC--Ee--cCHHHH-----HhCCCEEE
Confidence 3689999999874 55556665543 36689999999876443322 132 21 122222 13689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 174 (256)
.... ...++. .....+|+|++++.+..
T Consensus 273 ~aTG---------------------------~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 273 TATG---------------------------NKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCCEEEEcCC
Confidence 7421 123454 56778999999988654
|
|
| >PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.1 Score=33.61 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEeCCCCHHHH-HHHHHHcCCcE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTLTANDPSQI-CLQMMEKGYAA 193 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~g~~~ 193 (256)
||+|+++||+........+ .....+.... .+.+.+ .+.+++.++|.+++-.. .....+. .+.|.+.||+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~---~~~~~Y~tm~----~~~i~~Lpv~~l~~~~~~lflWvT-n~~~~~~~~~l~~~WGf~~ 72 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG---GAEAHYPTMS----LDEIKSLPVPQLAAPGALLFLWVT-NSQLPEAKLELFPAWGFEY 72 (176)
T ss_pred CCEEEEeCCCCCcCccccc---ccccCCCccC----HHHHHhCCHHHhCCCCcEEEEEec-cchhhHHHHHHHHhCCCEE
Confidence 7999999999876654332 0111111111 223322 35677888888888543 3334455 88899999875
Q ss_pred E
Q 025180 194 R 194 (256)
Q Consensus 194 ~ 194 (256)
+
T Consensus 73 ~ 73 (176)
T PF05063_consen 73 V 73 (176)
T ss_pred E
Confidence 3
|
It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process |
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.2 Score=34.52 Aligned_cols=143 Identities=17% Similarity=0.062 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH------HHHHHHH---HcCCcceEEEcchhhchh--h
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE------VTRKTLE---AHNVHADLINTDIASGLE--K 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~------~a~~~~~---~~~~~~~~~~~d~~~~~~--~ 110 (256)
...+||.+|=|.=.++..++..+++. ...++++.++..-.+ -++.|+. .+|.. -++..|+..... .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~s--a~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~-I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRS--AGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT-ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCcc--ccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc-eEecccceeEEeccc
Confidence 45789999999999888888887643 235666655544322 2344443 23332 233334443322 3
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeC-CCCH-HHHHHHHH
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLT-ANDP-SQICLQMM 187 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~-~~~~-~~~~~~~~ 187 (256)
+.-++||-||.|.|+.-..-. ++.+.-... ...+....+++.+..+|+ ..|.+.+.... .... -.+....+
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~----~e~d~~~i~--~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak 206 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK----FEQDRNIIP--LHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAK 206 (282)
T ss_pred ccccccceEEEcCCCCCCCcc----cccchHHHH--HHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhh
Confidence 334789999999887432211 111111000 123456788999999999 78998885432 2222 23444444
Q ss_pred HcCCcE
Q 025180 188 EKGYAA 193 (256)
Q Consensus 188 ~~g~~~ 193 (256)
+.|+..
T Consensus 207 ~~gl~L 212 (282)
T KOG4174|consen 207 EFGLTL 212 (282)
T ss_pred hccccc
Confidence 555553
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.34 E-value=5.2 Score=33.99 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=69.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|+=+| .|.++-.+++.+.+++....+++.|.+....+.+.+ .++..+........ .....|+|+..-
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~~~~~~~~~-----~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDELTVAGLAE-----AAAEADLVIVAV 72 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccccccchhhh-----hcccCCEEEEec
Confidence 4455555 666777778888777777788999999888776543 12221211111011 124689999866
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|. .....+++++...|++|-.+.= ..+....+.+.+.++.-.
T Consensus 73 Pi------------------------~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PI------------------------EATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred cH------------------------HHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHhccC
Confidence 63 2367888888888899877663 233456677777776533
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.25 E-value=2.4 Score=37.50 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+ .++.. +..........+
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT----FGVT-DFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-EEEcccccchHHHHHHHHHhCC
Confidence 46889998875 45555554443322 34 58999999887777644 3433 22211 222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- ....+..+.+.|++| |+++++.
T Consensus 263 g~d~vid~~G---------------------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVG---------------------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 6899986311 123466777889998 9998754
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=89.16 E-value=5.3 Score=35.76 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++.+|+=+|+ | .|..++.+++.++ .....|+++|.+++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G--~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGP--IGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcc--cCCceEEEEcCCHHHHHHHHHh
Confidence 46778887863 3 5555555555421 0113799999999999988774
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.09 E-value=9.5 Score=31.30 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+...+.+...+....++..|+.+... .. .-
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56888888865 45567777777654 5689999998887776666655444333566777654321 10 11
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|....
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999987554
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.8 Score=35.49 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=65.8
Q ss_pred ccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh---------hhcCCCccE
Q 025180 50 GCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE---------KRLAGLVDV 118 (256)
Q Consensus 50 GcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~~fD~ 118 (256)
|+| ++.++..+++.+.+. +++|+.++.+++..+..-+.+.. .+ .+++..|+.+... ....+++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 455 456677788877654 67999999999976444444333 33 3468888754321 111278999
Q ss_pred EEECCCCCCCC---Cc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTP---ED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.|..+.... .+ +....+-...+.. .......+.+.+.++++++|.++++..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDI---NVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 99876544331 10 0000000101100 011233456667778999999888653
|
... |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.6 Score=35.58 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=58.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++. .|.+ .++. .+..+........
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~-----~G~~Vi~~~~~~~~~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKL-----KGCYVVGSAGSDEKVDLLKNK---LGFD-DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHHh---cCCc-eeEEcCCcccHHHHHHHhCCC
Confidence 57788988876 345555555554 356899999888877776653 2332 2222 1232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+..+.+.|+++|+++.+.
T Consensus 221 gvd~v~d~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVG----------------------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCC----------------------------HHHHHHHHHHhccCcEEEEec
Confidence 6899876310 244677788999999998754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.79 E-value=2.6 Score=36.71 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+||=.|+ |.++..+.+.+.. .++.++++|.+++..+.+++
T Consensus 165 ~~g~~VlV~G~--G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGA--GGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH
Confidence 56889999998 4444444433332 24589999999998887754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.6 Score=37.06 Aligned_cols=125 Identities=11% Similarity=0.155 Sum_probs=64.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCcceE----------EEcchhhchhhh
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVHADL----------INTDIASGLEKR 111 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~~~~----------~~~d~~~~~~~~ 111 (256)
+|.=+ |.|.++..++..+...+.+.+|+++|++++.++..++.... .++. ++ ...|..+.
T Consensus 3 ~I~Vi--G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~-ell~~~~~~~l~~t~~~~~~---- 75 (473)
T PLN02353 3 KICCI--GAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLD-EVVKQCRGKNLFFSTDVEKH---- 75 (473)
T ss_pred EEEEE--CCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHH-HHHHHhhcCCEEEEcCHHHH----
Confidence 34445 45555555666666555567899999999998876543210 1111 11 11111111
Q ss_pred cCCCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHH
Q 025180 112 LAGLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMME 188 (256)
Q Consensus 112 ~~~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~ 188 (256)
-...|+|+..- |........ .....+.......+.+.+.|++|-.+++-+ ......+.+...+.+
T Consensus 76 -i~~advi~I~V~TP~~~~g~~~-----------~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 76 -VAEADIVFVSVNTPTKTRGLGA-----------GKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -HhcCCEEEEEeCCCCCCCCCcC-----------CCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 13468876532 432110000 001123457788889999998866655422 223334566666665
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=88.56 E-value=5.3 Score=30.99 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH-HHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV-TRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~-a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+++++=+|+..-.+-..+.+ ...+.|..+|.++--++. .+.++. .+...|+..-... ..++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-----~GA~~iltveyn~L~i~~~~~dr~s------si~p~df~~~~~~-y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-----HGAAKILTVEYNKLEIQEEFRDRLS------SILPVDFAKNWQK-YAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHH-----cCCceEEEEeecccccCcccccccc------cccHHHHHHHHHH-hhccchhhhe
Confidence 46777777775554332222 334579999987644321 111110 3333344333222 2477999887
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---------HHHHHHHHHcCCc
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---------SQICLQMMEKGYA 192 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~g~~ 192 (256)
-...-+..=. .+-++.. +.| -...+..+..+||+||.+++..|-.... ..++-.+.-.||+
T Consensus 70 ~~siEh~GLG--RYGDPid-----p~G---dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 70 FSSIEHFGLG--RYGDPID-----PIG---DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred echhcccccc--ccCCCCC-----ccc---cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 3222110000 0000000 011 2456778889999999999977644321 2334444456777
Q ss_pred EEEEEec
Q 025180 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+...+..
T Consensus 140 ~i~tfs~ 146 (177)
T PF03269_consen 140 WIDTFSG 146 (177)
T ss_pred EEeeecc
Confidence 7665543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.55 E-value=8.5 Score=32.70 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+|.=+|+| .++..++..+.. .+..|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSG--VMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECcc--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHH
Confidence 456666665 444445555543 25689999999999987766544
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=12 Score=30.43 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++..+++.+.+. +.+|++++-+. ...+.....+...+....++.+|+.+... ...
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4578888885 455666777776543 56788877653 23333333333333333667777665421 111
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|+++.|......... .....+.. .......+++.+.+.++.+|+++++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~-----~~~~~~~v---n~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGM-----DEDYAMRL---NRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCC-----CcceeeEe---eeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1468999987643221110 00000000 01123455666777766677776654
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=88.44 E-value=4.5 Score=28.31 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
++|| +.||+|.-+-. +++..++.+..++++.++...++.+.... ...+|+|+.-|
T Consensus 4 ~~IL-l~C~~G~sSS~----------------------l~~k~~~~~~~~gi~~~v~a~~~~~~~~~--~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL----------------------LVNKMNKAAEEYGVPVKIAAGSYGAAGEK--LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHH----------------------HHHHHHHHHHHCCCcEEEEEecHHHHHhh--cCCCCEEEECc
Confidence 5666 78999964321 22344555566788777777777665322 24689999976
Q ss_pred C
Q 025180 124 P 124 (256)
Q Consensus 124 P 124 (256)
.
T Consensus 59 q 59 (95)
T TIGR00853 59 Q 59 (95)
T ss_pred h
Confidence 5
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=5.2 Score=33.96 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+ .+..+...+.+...+....++..|+.+... ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578998885 566777788877754 5678877643 333444444444334334566777765311 00
Q ss_pred cCCCccEEEECCCC
Q 025180 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+.+|+++.|..+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 12568999987654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=7.5 Score=32.93 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
++++||=.|+ +|.++..+++.+.++ +++|+.++.++ ...+.....+...+....++..|+.+... ...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888875 555677777777654 56888887764 23333334444334344677777654321 111
Q ss_pred CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.+..+...... +....+....+.. .......+++.+.+.++++|.++++.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~---N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKT---NIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987654321110 0000000011100 01113344556666677778877755
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=88.23 E-value=5.1 Score=36.06 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++++|+=+|+|. ++..+++.+. ..+++|+.+|.++...+.|+. .|. ... +..+.. ..+|+|+
T Consensus 200 l~GktVvViG~G~--IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~--~~~--~~~e~v-----~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGD--VGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY--EVM--TMEEAV-----KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC--EEc--cHHHHH-----cCCCEEE
Confidence 4789999999985 3333444443 235689999999987776654 233 111 222211 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH-HhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS-ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~ 174 (256)
.... ...++.. ..+.+++||+++.+..
T Consensus 263 ~atG---------------------------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG---------------------------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 7421 1234544 4789999999988654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=14 Score=30.61 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
-.++.+|=.|+++ +.++.++++.+.+. +++|+.++.++...+.+++.....+ ...++..|+.+... ..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHH
Confidence 3578999999887 47888888887754 5688888887654333333222222 12355666554321 11
Q ss_pred cCCCccEEEECCCCC
Q 025180 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 85 ~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 85 EWGRLDFLLHSIAFA 99 (258)
T ss_pred HcCCCCEEEEcCccC
Confidence 126799999987543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.04 E-value=8 Score=32.80 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=61.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcc-------------eE-EEcchhhc
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHA-------------DL-INTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~-------------~~-~~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+.+|.+++.++.+.+.+... +... .+ ...+..+.
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 4555555 55555566665533 558999999999998877653321 1100 01 11122111
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-...|+|+..-|- .......++.++.+.++++.++...+.+ -....+.+.+
T Consensus 79 -----~~~aD~Vi~avpe----------------------~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~~~ 129 (288)
T PRK09260 79 -----VADADLVIEAVPE----------------------KLELKKAVFETADAHAPAECYIATNTST-MSPTEIASFT 129 (288)
T ss_pred -----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhc
Confidence 2457999975441 1233456777788888887766554333 3344444444
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=13 Score=30.25 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hh---cCCCcc
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KR---LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~---~~~~fD 117 (256)
++|+=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+ ....++..|+.+... .. ....+|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4677677 5577788888887754 5689999998876655544443322 233677788765421 11 123579
Q ss_pred EEEECCCC
Q 025180 118 VMVVNPPY 125 (256)
Q Consensus 118 ~Ii~npP~ 125 (256)
+++.+..+
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.7 Score=38.35 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+-+.|+|+|.|-|.++.-++.. -+..|.|||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~-----y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG-----YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc-----cCceEEEeccchHHHHHHHH
Confidence 5589999999999976555543 46799999999777766654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.87 E-value=7.3 Score=33.67 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=.|+| .++..+.+.... .++.+++++.+++..+.+++ .|.+ .++.. .+. ..+.+|+++
T Consensus 164 ~~g~~VlV~G~g--~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~Ga~-~vi~~--~~~----~~~~~d~~i 228 (329)
T TIGR02822 164 PPGGRLGLYGFG--GSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LGAA-SAGGA--YDT----PPEPLDAAI 228 (329)
T ss_pred CCCCEEEEEcCC--HHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hCCc-eeccc--ccc----CcccceEEE
Confidence 578899988864 333333333221 35689999999888777665 3432 22211 111 123578765
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..-. ....+....+.|+++|+++++-.
T Consensus 229 ~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP---------------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC---------------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 4211 12457777889999999988653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.70 E-value=6.8 Score=33.75 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=54.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCC
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~ 114 (256)
.++.+||-.|+| .|..++.+++.+ + ..+++++.++...+.+++. +.. .++ ..++.+..... ...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~-----g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLL-----GAARIIAVDSNPERLDLAKEA----GAT-DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCcchHHHHHHHHcCCC
Confidence 467888887654 345555555542 3 2788888888777665542 322 222 12222222221 125
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++..-. -...+....+.|+++|+++...
T Consensus 236 ~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG---------------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6999986311 1245777788999999988653
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=17 Score=31.20 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhchh------hh--
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~-- 111 (256)
.+++++=.|++ |.++.++++.|.++ +++|+.+.-+++..+.+.+.+.... ....++..|+.+... ..
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56778877775 55677788877654 5789998888777666655554322 233677778765421 11
Q ss_pred cCCCccEEEECCCCC
Q 025180 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+++|++|.|.-..
T Consensus 90 ~~~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EGRPIHLLINNAGVM 104 (313)
T ss_pred hCCCccEEEECCccc
Confidence 125689999987543
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=15 Score=30.41 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++.+. +.++...+.+ .+....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTL--EGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHc--CCCceEEEecCCCCHHHHHHHHHHH
Confidence 568899999884 77888889988754 56788776442 3333332221 12223566677654421 11
Q ss_pred --cCCCccEEEECCCCC
Q 025180 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 126799999887543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=87.55 E-value=10 Score=31.59 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.| |+|.++.++++.+.++ +++|+.++.++...+...+.+. .+....++..|+.+... ... -
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~--G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKH--GAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 467788777 5567788888877654 5789999988766554443332 12223677777765421 101 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 578999987643
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.4 Score=37.97 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=59.9
Q ss_pred CCCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGc-G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++++|-=+|. |-|.+++.+++.+ +.+|+++|-+...-+.+-+ ..|.+.-+. ..|..+......+.-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 36777776665 4788999999875 4689999998755454433 344443111 2333333322223344
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|-+..- ....++.+..+||++|.++++.-+.
T Consensus 252 ~~v~~~-----------------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-----------------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-----------------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 444320 1344677788999999999876433
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=87.48 E-value=14 Score=31.05 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=61.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEEEcchhhchh-hhcC---
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLINTDIASGLE-KRLA--- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~~~d~~~~~~-~~~~--- 113 (256)
....|+.+|||-=.-. ..+.. .++..++=+|. |+.++.-++.+...+. ...++..|+.+... ....
T Consensus 81 g~~qvV~LGaGlDTr~----~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 81 GIRQVVILGAGLDTRA----YRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred CCcEEEEeCCccccHH----HhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 3568999999988742 33331 12455655554 5566666666665442 12677777763221 1111
Q ss_pred --CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 114 --GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 --~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..-++++-..+...+. .....++..+.+...||+.+++-..
T Consensus 155 d~~~ptl~i~EGvl~YL~~-------------------~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTE-------------------EAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCeeeeecchhhcCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEec
Confidence 22335554332222111 2367888888888889999988543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=12 Score=31.05 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++.| .++.++++.+.++ ++.|+..+.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKH--GAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888888764 4777777776643 568888877643323333332222211 345667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 26799999987543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=3.8 Score=35.59 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCC-C
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAG-L 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~-~ 115 (256)
+++.+||=.|. |.|.+++.+++.+ ++.++++--+++-.+.+++ .|.+. +....|+.+...+...+ .
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~-----G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL-----GATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 56889998885 4567777777764 2356666666655554443 34332 34445565555444333 6
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+|+..- =...+......|+++|+++.+....
T Consensus 212 vDvv~D~v----------------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVLDTV----------------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEEECC----------------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 99998731 1355666788899999999866533
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.29 Score=35.19 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHHhhccccCeEEEEE
Q 025180 152 IDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+..++..+.+.|+|||++++-
T Consensus 23 l~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEEe
Confidence 678999999999999999993
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.1 Score=35.82 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+| .++..+.+.... -++ .|+++|.+++..+.+++ .|.+..+.. .++.+.......+.
T Consensus 184 ~~g~~VlV~G~G--~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 184 EEGDTVAVFGLG--GIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 467888888864 444433333221 244 79999999998887754 243221111 11222222222236
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
+|+++-.-. -...+..+.+.++++ |+++++..
T Consensus 256 ~d~vid~~G---------------------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 256 VDYSFECIG---------------------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 899876311 124566777788886 99887653
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=11 Score=35.28 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=44.8
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
||.|.++..+++.+.++ +..++.+|.+++.++.+++. ...++.+|..+.. ....-++.|.+++
T Consensus 423 ~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 67777777888887654 45799999999988877642 3478899987653 2222357897765
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=9.7 Score=31.79 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=82.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC--------CCceEEEEeCCHHHHHHHHH-------------------------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEV--------PGVQYIATDINPYAVEVTRK------------------------- 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~--------~~~~v~giD~~~~~i~~a~~------------------------- 88 (256)
+.-.|+|+|-|+|...+.+.+...+.. ..-.+++++.+|.....+..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 567899999999998777666533221 13458888877654332221
Q ss_pred -HHHHcCCc-ceEEEcchhhchhhhcCC--CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 89 -TLEAHNVH-ADLINTDIASGLEKRLAG--LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 89 -~~~~~~~~-~~~~~~d~~~~~~~~~~~--~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+...+.. ..+..+|+.+.++..... .+|+.+.+- |.+. +.+. .| .+.++..+.+..+
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDg-FsP~-------kNP~-mW---------~~e~l~~~a~~~~ 199 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDG-FRPV-------KNPE-MW---------EDELLNLMARIPY 199 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCC-cccc-------CChh-hc---------cHHHHHHHHhhcC
Confidence 11111111 167777877766553221 688887642 1111 1111 12 5788999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+||.+.- +.....+++-+...||.....
T Consensus 200 ~~~~l~t----~ssA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 200 RDPTLAT----FAAAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred CCCceec----hHHHHHHHHHHHHcCceeeec
Confidence 9999875 445677899999999986443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=8.1 Score=36.66 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.+.+. +..++.+|.|++.++.+++. ...++.+|..+.. ....-++.|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 67778888888887643 55899999999999887652 2378889987653 22223578888873
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=5.8 Score=28.85 Aligned_cols=64 Identities=23% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..++|+|+|.|-=.- +++.|.++ +..++++|+++.. +. ...++...|+.+..... =...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~---VA~~L~e~--g~dv~atDI~~~~---a~-------~g~~~v~DDitnP~~~i-Y~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLD---VAKRLAER--GFDVLATDINEKT---AP-------EGLRFVVDDITNPNISI-YEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHH---HHHHHHHc--CCcEEEEeccccc---Cc-------ccceEEEccCCCccHHH-hhCccceee
Confidence 346999999886553 56666654 4789999999871 11 12378888988875442 145799987
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=12 Score=30.69 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=49.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---cCC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---LAG 114 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~~~ 114 (256)
++||=.|++ |.++..+++.+.++ +++|++++-+++.++.....+. +....++.+|+.+... .. ..+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456666654 56677788877654 5789999988877665544332 2233677777765321 11 035
Q ss_pred CccEEEECCCCC
Q 025180 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|+++.+.-..
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 789999876543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=16 Score=30.17 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~-----~~ 114 (256)
++++||=.|++ |.++..+++.+.++ ++.|++++.+++..+.....+ ..+....++..|+.+... ... .+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35667777765 45566677776644 578999999887776655444 222233677777765421 100 25
Q ss_pred CccEEEECCCCC
Q 025180 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
.+|.++.+..+.
T Consensus 80 ~id~lv~~ag~~ 91 (263)
T PRK09072 80 GINVLINNAGVN 91 (263)
T ss_pred CCCEEEECCCCC
Confidence 689999986543
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.44 E-value=9.6 Score=32.77 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++.+ +. .+++++.++...+.+++. +.+ .++..+ +... .. ....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~-~vi~~~~~~~~~~-~~-~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD-ETVNLARDPLAAY-AA-DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC-EEEcCCchhhhhh-hc-cCCCc
Confidence 678888887653 44444444432 44 689999988877755442 322 222111 1111 11 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.... ....++...+.|+++|+++.+.
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASG---------------------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987311 1234677788999999998754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
Probab=86.21 E-value=6.5 Score=28.07 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
..++.++.+|++.++...+..+.........+|+|++.|
T Consensus 20 k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 20 KTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred HHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 334455567777677777766543221234689999964
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=17 Score=30.33 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++. +.++.++++.+.+. +++|+.++.++...+..++.....+.. ..+..|+.+... .. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~g~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFTYQGEALGKRVKPLAESLGSD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEecCchHHHHHHHHHHHhcCCc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889899876 36777788887754 568888887654333333332222321 355667654321 10 1
Q ss_pred CCCccEEEECCCC
Q 025180 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-+++|++|.|.-.
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2679999998754
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.11 E-value=20 Score=31.19 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=74.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCcc-----eEE-Ecchhhchhh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVHA-----DLI-NTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~~-----~~~-~~d~~~~~~~ 110 (256)
++|-=+|+| .++..++..+. ..+..|+..|.+++.++.++..+.. .++.. .+. ..++.+.
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a--- 80 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC--- 80 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH---
Confidence 567777766 33333444433 2477999999999988776665432 12110 111 1122111
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
-...|+|+-+-| ...+....++.++.+.++|+-++...+. .-...++...+ .
T Consensus 81 --v~~aDlViEavp----------------------E~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~---~ 132 (321)
T PRK07066 81 --VADADFIQESAP----------------------EREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARA---T 132 (321)
T ss_pred --hcCCCEEEECCc----------------------CCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhc---C
Confidence 146799988654 1244567888999999999875554333 22233444433 2
Q ss_pred CcEEEEEecCCC-CccEEEEEEEecCcc
Q 025180 191 YAARIVVQRSTE-EENLHIIKFWRDFDI 217 (256)
Q Consensus 191 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 217 (256)
-....+...... ...+-+++.......
T Consensus 133 ~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 133 HPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred CcccEEEEecCCccccCceEEEeCCCCC
Confidence 223333333332 333456666655544
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.07 E-value=20 Score=30.53 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eE-EEcchhh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~-~~~d~~~ 106 (256)
.+|-=+|+| ..+..++..+. ..+..|+..|.+++.++.+++.+... +. .. ++ ...|...
T Consensus 6 ~~V~ViGaG--~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAG--QMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred cEEEEEccc--HHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 467777776 33333444443 23679999999999998877665432 11 00 11 1222211
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEE
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYL 171 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~ 171 (256)
-...|+|+-.-| ...+....++..+..++ +|+.++.-
T Consensus 82 ------~~~~d~ViEav~----------------------E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 ------FADRQLVIEAVV----------------------EDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ------hCCCCEEEEecc----------------------cCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 146799987533 23445667788888888 67766654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=18 Score=29.74 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=49.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++++|=.|.++ +.++.++++.+.++ +++|+.++-+....+.+++. .+....++..|+.+... .. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYTYQNDRMKKSLQKL---VDEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEecCchHHHHHHHhh---ccCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888888875 67888888888754 56888887764333222221 11123566777754321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999987654
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.84 E-value=5.9 Score=34.54 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 115 (256)
+++.+|.=+||| -|...+.-++. .....|+++|+++...+.|++- |.. .+++. |+.+.....-++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~----agA~~IiAvD~~~~Kl~~A~~f----GAT-~~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKA----AGAGRIIAVDINPEKLELAKKF----GAT-HFVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHH----cCCceEEEEeCCHHHHHHHHhc----CCc-eeecchhhhhHHHHHHHhcCCC
Confidence 456666666665 34444444444 2345899999999999988764 322 22221 4555444443446
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.|..+-.- + ....+++....+.++|..+++-..
T Consensus 255 ~d~~~e~~------------------------G---~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAFECV------------------------G---NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEEEcc------------------------C---CHHHHHHHHHHHhcCCeEEEEecC
Confidence 67665410 0 124677777778889999886643
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=11 Score=32.59 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++. |++++.+++..+.+++ .+.. .++.. +............+
T Consensus 159 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGA--GTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LGAM-QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCCc-eEecCcccCHHHHHHHhcCCCC
Confidence 46788888876 4455444443332 2444 7899999988777643 2322 22111 11111111112357
Q ss_pred c-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 D-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| +|+-.- | -...+....+.|++||+++++.
T Consensus 230 d~~v~d~~------------------------G---~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETA------------------------G---VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECC------------------------C---CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 554321 0 1346777888999999999864
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=16 Score=29.95 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|-.|+ +|.++.++++.+.++ +++|+.++.++. +...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~--G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKA--GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 5688998886 456677788877653 668888876542 22333333334334667777655421 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-+.
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.36 E-value=8.5 Score=29.60 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|..+..+++.|.+. +..|++.|.+++..+...+. + -....+..+.. ...|+|++.-|-
T Consensus 8 GlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~----g---~~~~~s~~e~~-----~~~dvvi~~v~~------ 67 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA----G---AEVADSPAEAA-----EQADVVILCVPD------ 67 (163)
T ss_dssp --SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT----T---EEEESSHHHHH-----HHBSEEEE-SSS------
T ss_pred chHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh----h---hhhhhhhhhHh-----hcccceEeeccc------
Confidence 4567777788877643 56899999999877765442 1 22223333332 245999986441
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCc
Q 025180 132 EVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYA 192 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~ 192 (256)
-.....++.. +...|++|.+++-.. +.. ...++.+.+.+.|..
T Consensus 68 -----------------~~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 68 -----------------DDAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVR 114 (163)
T ss_dssp -----------------HHHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEE
T ss_pred -----------------chhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhccce
Confidence 1224566666 777777777766422 221 233556666666644
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=8.8 Score=34.59 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----------hcC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------RLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------~~~ 113 (256)
.+|.=+|. |.++..++..|.+. +.+|+++|.+++.++..+.. ..+ +...++.+.... ...
T Consensus 4 ~kI~VIGl--G~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~~--~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGL--GYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EIH--IVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECc--chhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CCC--cCCCCHHHHHHHHhhcCceeeeccc
Confidence 34555555 55555566666543 46899999999988753211 111 111111110000 001
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-CCCCHHHHHHHHHHc
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-TANDPSQICLQMMEK 189 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~ 189 (256)
+..|+|+...|-....+ +..........++.+...|++|-.++..+- +....+++...+.+.
T Consensus 74 ~~aDvvii~vptp~~~~--------------~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 74 EPADAFLIAVPTPFKGD--------------HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred ccCCEEEEEcCCCCCCC--------------CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 25788887544211000 111233456677888888988777665332 233445666666554
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.18 E-value=17 Score=30.46 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh-cCCCc
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-LAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-~~~~f 116 (256)
+.+|=-|+ |.++.++++.+. + +++|+.+|.++..++.+.+.+...+....++..|+.+... .. ..+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 34554564 468888998884 2 6799999998876665555554434344566777654321 10 12579
Q ss_pred cEEEECCCCC
Q 025180 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|++|.|.-+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999987543
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.17 E-value=10 Score=32.59 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+||-.|+|. |..++.+++. .+.+++++..+++..+.+++ .+.+. .....++.+.+... ....+
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~-----~g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA-----RGARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCC
Confidence 4678888887652 4444444443 25689999888887776643 23221 11112222222222 22459
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-- -...+..+.+.|+++|+++.+.
T Consensus 229 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG---------------------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 99987310 1245677788999999988754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.13 E-value=5.9 Score=34.80 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .+.+ .++.. ++.+.......+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FGAT-DCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-EEEcccccchHHHHHHHHHhCC
Confidence 56788888875 4555555554432 245 69999999998877654 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 256 g~d~vid~~g---------------------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 256 GVDYTFECIG---------------------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCcEEEECCC---------------------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 6899976310 124566777889887 99887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.04 E-value=6 Score=35.28 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
.+||=+|| |.++..++..|.+.+- .+|+..|-+.+..+.+...... ..+..+.|+.+... ... ..+|+||.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 56889999 7777778888776543 6999999998887776654322 34677777766521 222 34599997
Q ss_pred CCCCC
Q 025180 122 NPPYV 126 (256)
Q Consensus 122 npP~~ 126 (256)
--|++
T Consensus 75 ~~p~~ 79 (389)
T COG1748 75 AAPPF 79 (389)
T ss_pred eCCch
Confidence 55544
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=17 Score=30.41 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=48.6
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++++|=.|.+ ++.++.++++.+.++ +++|+.+.-++...+.+++.....+. ...+..|+.+... .. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~--G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAA--GAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHHHHh
Confidence 45778888887 477888888888754 56887776554333333333222221 2456677644321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+.+|++|.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 25799999987553
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.01 E-value=9.2 Score=31.32 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=51.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
++||=.|+ +|.++..+++.+.+. +++|++++-++...+...+.....+....++.+|+.+... ......+|+++.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777776 456677777777643 5789999888776655555544444445777788765421 122347999999
Q ss_pred CCCC
Q 025180 122 NPPY 125 (256)
Q Consensus 122 npP~ 125 (256)
|--+
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.38 E-value=12 Score=32.06 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+....|+++|.+++..+.+++ .+.... ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~~-~~~~~~~~-----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGDR-VTTSAAEA-----VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCce-ecCCHHHH-----hcCCCEEEECC
Confidence 567777765 4444455555433322479999999987766543 232111 11122121 14579999865
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|-. ....+++.+...++++..++.
T Consensus 75 p~~------------------------~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVG------------------------ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHH------------------------HHHHHHHHHHhhCCCCCEEEe
Confidence 421 134556666677888876543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=84.35 E-value=1.8 Score=32.68 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
.|.|.++..++..|.+ .+..|+.+.-.+ .++..+ ..++.. ..+...............+|+|+..-.
T Consensus 4 ~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp ESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred ECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 3666677777777765 356899999877 555433 233221 111111100000112468999998422
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+ .....++.+.+.+.++..+++...+....+.+.+.+
T Consensus 77 a~------------------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY------------------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp GG------------------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cc------------------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 11 156788889999999988888776666555555554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=19 Score=29.77 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCH--HHHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINP--YAVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~--~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++++|=.|+| ++.++.++++.+.++ +++|+.++.+. +..+...+.+ +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999986 678888889887754 56888887653 3333332222 2223566677654421 10
Q ss_pred -cCCCccEEEECCCCC
Q 025180 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 126799999987543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.29 E-value=9.4 Score=32.24 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=59.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cC-Ccc--------eEE-Ecchhhc
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HN-VHA--------DLI-NTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~-~~~--------~~~-~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+++|.+++.++.+++.+.. .+ +.. .+. ..|...
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 3444555 55555556655433 45899999999998766543322 22 110 111 122211
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-+..|+|+..-| ........++..+.+.++++.++...+.+ -....+.+.+
T Consensus 80 -----~~~aDlVi~av~----------------------e~~~~k~~~~~~l~~~~~~~~il~s~ts~-~~~~~la~~~ 130 (282)
T PRK05808 80 -----LKDADLVIEAAT----------------------ENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAAT 130 (282)
T ss_pred -----hccCCeeeeccc----------------------ccHHHHHHHHHHHHhhCCCCcEEEECCCC-CCHHHHHHhh
Confidence 146799887432 11223468888888889998877543332 2233444444
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.12 E-value=13 Score=32.12 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcC-CCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~-~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|++++.+++..+.+++ .+.+. .....++.+.+..... ..+
T Consensus 171 ~~g~~vlI~g~--g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGA--GPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 46778877764 4555555554443 245 78999988888777644 23322 1112233222222222 349
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++-.-. ....+..+.+.|+++|+++.+..
T Consensus 243 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG---------------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 99987421 12356777888999999887543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=84.05 E-value=11 Score=31.24 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+||=.|+|. |..++.+++.+ ++. +++++.+++..+.+++. +....+....- .. .....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~---~~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-----GAREVVGVDPDAARRELAEAL----GPADPVAADTA-DE---IGGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEECCCHHHHHHHHHc----CCCccccccch-hh---hcCCCCCE
Confidence 4678888887653 44444444442 345 99999998887766542 21111111100 00 01246899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+..-. ....+....+.|+++|+++.+..
T Consensus 163 vl~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 163 VIEASG---------------------------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred EEEccC---------------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence 986311 12456777888999999987643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.00 E-value=13 Score=32.16 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch---hhchhh-h
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DI---ASGLEK-R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~---~~~~~~-~ 111 (256)
.++.+||=.|+|. |..++.+++. .++. +++++.+++..+.+++. +.+ .++.. +. .+.... .
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~-----~G~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKA-----FGATKVVVTDIDPSRLEFAKEL----GAT-HTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHc----CCc-EEeccccccchhHHHHHHHHh
Confidence 4677888776543 3444444443 2445 89998888777666441 322 22111 11 111111 1
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....+....+.|+++|+++.+.
T Consensus 231 ~~~~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTG---------------------------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1245999986311 1235777788999999988754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.78 E-value=11 Score=32.14 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCc
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~f 116 (256)
.++.+||-.|+| .|...+.+++. .++. +++++.+++..+.+++ .+.. .++..+-.+.. .......+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~-----~G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKL-----NGASRVTVAEPNEEKLELAKK----LGAT-ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHH----hCCe-EEecCCCCCHHHHHHhcCCCC
Confidence 467889988754 24444444443 2445 8899999887776643 2332 22221111100 11123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-+ ....+....+.|+++|+++.+.
T Consensus 228 d~v~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 228 DVVIEATG---------------------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 99987421 1345677788899999998754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=18 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++-+++..+.+...+. ...++.+|+.+... .. ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~--G~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQA--GAHVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 5678888885 566788888887654 5689999988776655444332 13566777665421 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987654
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.63 E-value=15 Score=31.81 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+ |.++..+++..... ++ .++++|.+++..+.+++ .+.+ .++. .+..+...... ...
T Consensus 165 ~~g~~vlI~g~--g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 165 KLGDTVAVFGI--GPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCC
Confidence 46788888875 44554444443322 34 59999999887776654 3332 2221 12222221211 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-. -...+..+.+.|+++|+++.+.
T Consensus 236 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGG---------------------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 999986311 1245778888999999988754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.29 E-value=12 Score=30.30 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=53.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++-++.......+.+...+....++.+|+.+... ... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAAD--GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577886664 677788888877654 5689999988776665555554444344677778765421 111 1
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+.+|.|+.+.....
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999875543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=23 Score=28.74 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +.+|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 456788777 6677788888887654 5689999988766655544443322223566777765421 00 01
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+-.+.
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 4689999977654
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=83.14 E-value=22 Score=30.24 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=60.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCC-cc--------eE-EEcchhh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~-~~--------~~-~~~d~~~ 106 (256)
++|.=+|+ |.++..++..+.. .+..|+++|.+++.++.+++.+.. .+. .. .. ...+. +
T Consensus 5 ~~V~vIG~--G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 5 KKVGVVGA--GQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CEEEEECC--CHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 45555655 5555556665543 356899999999998876655431 111 00 01 11121 1
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
. -...|+|+..-| ...+....++.++...++++.+++..+.+. ...++.+.+
T Consensus 80 ---~--~~~aD~Vieav~----------------------e~~~~k~~v~~~l~~~~~~~~il~s~tS~i-~~~~l~~~~ 131 (295)
T PLN02545 80 ---E--LRDADFIIEAIV----------------------ESEDLKKKLFSELDRICKPSAILASNTSSI-SITRLASAT 131 (295)
T ss_pred ---H--hCCCCEEEEcCc----------------------cCHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhhc
Confidence 1 145799987533 112345677888888888887665433333 344444444
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=83.04 E-value=8.1 Score=33.28 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .++. +++++-+++..+.+++ .+.. .++..+- ...+.... ...
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~-----~G~~~v~~~~~~~~~~~~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKI-----LGAKRVIAVDIDDEKLAVARE----LGAD-DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCCHHHHHHHHH----cCCC-EEecCccccHHHHHHHhCCCC
Confidence 4677888887543 4444444443 2455 9999888877665532 2332 2221110 11111111 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.... -...+..+.+.|+++|+++.+.
T Consensus 228 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG---------------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 999987411 1245677788999999988754
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.99 E-value=12 Score=30.58 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
++||=.| |+|.++..+++.+.++ +..|++++-++...+.....+...+....++.+|+.+... .. ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAA--GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3556566 6677788888877644 5689999998877666655554444344677777765420 10 1245
Q ss_pred ccEEEECCCC
Q 025180 116 VDVMVVNPPY 125 (256)
Q Consensus 116 fD~Ii~npP~ 125 (256)
.|.|+.+.-.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987644
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.95 E-value=8.3 Score=33.81 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.. .++.. ++.+.......+
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FGVT-EFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcccccchhHHHHHHHHhCC
Confidence 57788888875 5666555554432 244 79999999988887754 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-... ....+....+.++++ |+++++..
T Consensus 257 ~~d~vid~~G---------------------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 257 GVDYSFECTG---------------------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 6898876311 124466667788996 99887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=25 Score=28.84 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh--
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|++ |.++..+++.+.++ +++|+.++.+++..+...+.+... +....++..|+.+... ..
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGL--GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56788888874 45566677776644 568999998887776666655443 2233666777754321 10
Q ss_pred cCCCccEEEECCCC
Q 025180 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+++|+++.+.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12578999987654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=82.65 E-value=17 Score=30.01 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHH---HHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPY---AVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~---~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++++|=.|++ ++.++.++++.+.++ +++|+.++.+.+ ..+.+. .+...+-...++..|+.+... ..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVR-ELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHH-HHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 46788989985 678888899888754 567776654322 111222 122111122456666644321 11
Q ss_pred --cCCCccEEEECCCCC
Q 025180 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 82 KQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHcCCCCEEEEccccc
Confidence 125799999987654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.53 E-value=18 Score=34.89 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ ++.|+++|.++...+.+...+... ....++..|+.+... .. .-
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578887776 455677777777654 568999999988776655544321 123566667654321 00 02
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.|--..
T Consensus 497 g~iDvvI~~AG~~ 509 (681)
T PRK08324 497 GGVDIVVSNAGIA 509 (681)
T ss_pred CCCCEEEECCCCC
Confidence 4789999876543
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=13 Score=30.37 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc--------hhhh-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~- 111 (256)
++++||=.| |+|.++..+++.+.+. +++|++++.+++..+...+.+...+. ...++..|+... ....
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 578888888 5777888888887654 56999999998776665555544332 224555555311 0011
Q ss_pred -cCCCccEEEECCC
Q 025180 112 -LAGLVDVMVVNPP 124 (256)
Q Consensus 112 -~~~~fD~Ii~npP 124 (256)
..+++|.||.+-.
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1257899998753
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.49 E-value=1.5 Score=42.06 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+..++|+..|.|+++++.+.+ |+.|+++|++|.++-..+..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRL------G~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRL------GLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhc------CceeEEEecccHHHHHHHHHHh
Confidence 5689999999999999998887 5799999999999888777654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=3.6 Score=34.96 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred Cccc-cccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC
Q 025180 1 MSLR-TAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN 79 (256)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~ 79 (256)
||+| .++++-..++.+.=+|+.+...+-. .... ...-.+++||=.|+ +|.++..+++.+.++ ++.|++++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~k~vlItGa-sggIG~~la~~La~~--G~~Vi~~~R~ 73 (293)
T PRK05866 1 MSKRPLRRLTDQLTLAGMRPPISPQLLINR---PPRQ-PVDLTGKRILLTGA-SSGIGEAAAEQFARR--GATVVAVARR 73 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCCCchhhcCC---CCCC-CcCCCCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 4555 4555544455555556554332211 0000 00124577887776 456677777777643 5789999999
Q ss_pred HHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCccEEEECCCC
Q 025180 80 PYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLVDVMVVNPPY 125 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~fD~Ii~npP~ 125 (256)
++.++...+.+...+....++..|+.+... .. .-+.+|+++.|.-.
T Consensus 74 ~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 74 EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 877766665554434344677777664321 11 12478999987643
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=27 Score=29.59 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|+.++.+++.++...+.+.. +.....+..|+.+... .. .-
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHAR--GAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788877754 55567777777643 57899999988776655443321 1122334466654321 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.19 E-value=10 Score=33.26 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+++.... .++ .|+++|.+++..+.+++ .+.+ .++.. ++.+........
T Consensus 183 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 183 EPGSTVAVFGL--GAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FGAT-DFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-cEeccccccchHHHHHHHHhCC
Confidence 46788888875 4555444443332 245 79999999888877754 2332 12111 112222222224
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 254 g~d~vid~~g---------------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECTG---------------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 6899986310 124566677788885 99887543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=30 Score=29.32 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh-
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~- 111 (256)
..+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+... +....++..|+.+... ..
T Consensus 14 ~~~k~vlItGa-s~gIG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAVVTGA-NTGLGYETAAALAAK--GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46678887775 566777788877654 568888888877666555544432 2233677788765421 11
Q ss_pred -cCCCccEEEECCCCC
Q 025180 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+.+|++|.|....
T Consensus 91 ~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 91 AAYPRIDLLINNAGVM 106 (306)
T ss_pred hhCCCCCEEEECCccc
Confidence 124689999987543
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=82.06 E-value=26 Score=28.52 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cCCCc
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~~~f 116 (256)
++|=.|+ +|.++..+++.+.++ ++.|+.++-++...+...+.+...+....++..|+.+... . . ..+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKD--GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555664 677777788877654 5689999988766655555554444444677777654321 0 0 12468
Q ss_pred cEEEECCCCC
Q 025180 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|.+|.+....
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 9999987654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=82.02 E-value=20 Score=30.61 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+||-.|+| .|..++.+++. .+..+++++.+++..+.+++ .+.+ .++..+-...... ..+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~-----~G~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~-~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARA-----MGFETVAITRSPDKRELARK----LGAD-EVVDSGAELDEQA-AAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----hCCc-EEeccCCcchHHh-ccCCCCEE
Confidence 467788888875 44443333333 24689999999888776643 2222 1211111111101 12468988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-. ....+..+.+.|+++|+++.+.
T Consensus 230 i~~~~---------------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV---------------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC---------------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 76311 1245677788999999998764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=19 Score=29.49 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|++++.++...+...+.+. ..++..|+.+... .. ..
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAE--GATVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56889988885 56677778777654 5789999988766554433321 1455566544311 00 11
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.|+.+..+.
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 4689999886543
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=81.82 E-value=17 Score=31.00 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCcc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~fD 117 (256)
.+.+++=+.-|+|.++..+.+... ..++++++++.+++..+.+++ .+.+ .++. .++.+...... ...+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGAE-YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCccHHHHHHHHhCCCCCc
Confidence 344454442333444433333222 235689999999988777755 3433 2222 22222222221 23689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++...- ........+.|+++|+++.+..
T Consensus 215 ~vid~~g----------------------------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 215 IFFDAVG----------------------------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEEECCC----------------------------cHHHHHHHHhhCCCCEEEEEEe
Confidence 9986310 1123445667899999987653
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=26 Score=28.66 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
+++++|=.|. +|.++..+++.+.++ ++.++.++.++...+. .+.+...+....++..|+.+... ... -
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~--G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEE--GAIPVIFGRSAPDDEF-AEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHc--CCcEEEEcCChhhHHH-HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4667777775 566788888877654 5678888877766533 33333334344677777754321 101 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 478999998754
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=39 Score=30.20 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.|.++..++..+.. +..|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 777777777766552 4689999999999988765
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=11 Score=30.64 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhc--------hh---
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASG--------LE--- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~--------~~--- 109 (256)
++++|+=.|+ +|.++..+++.+.++ +.+|++++-++...+...+.+...+ ....++..|+.+. ..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAA--GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 4678898884 667777788877653 5689999998877666555554332 1224455554321 11
Q ss_pred hhcCCCccEEEECCC
Q 025180 110 KRLAGLVDVMVVNPP 124 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP 124 (256)
....+.+|.|+.+.-
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 111156899998754
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=28 Score=28.55 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++||=.|+ +|.++..+++.+.++ +++|+.+. .+....+.+.+.+...+....++..|+.+... .. .-
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQ--GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357787885 566788888887654 56787764 45555555555555555445777788765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.+|.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987553
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.36 E-value=9.5 Score=31.39 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
++++||=.| |+|.++..+++.+.++ +++|+.++-++...+...+.+...+....++.+|+.+... .. ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEA--GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888 6778888888887654 5689999998877776666665544444677888765321 00 01
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999998654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.34 E-value=13 Score=32.37 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=54.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567777774 556677777777643 5689999999888777766666555455677778655421 00 12
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 579999987654
|
|
| >COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.26 E-value=7 Score=37.71 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccccCeEEEEEEeCCCCHH--HHHHH-HHHcCCcEEEEEe
Q 025180 151 VIDKILPSADKLLSKRGWLYLVTLTANDPS--QICLQ-MMEKGYAARIVVQ 198 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~-~~~~g~~~~~~~~ 198 (256)
.+..+++.++++|+++|+++.......... .+... ..+.|+.....++
T Consensus 566 l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~p 616 (875)
T COG1743 566 LFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWP 616 (875)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccc
Confidence 455678889999999999988655333222 23333 5566776655543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=81.11 E-value=8.2 Score=34.29 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCc-
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVH- 96 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~- 96 (256)
+...+.+.....++..++.+...|+|+|.|.....++...+ ...=+|+++.+..-+.+..+... .|-.
T Consensus 175 E~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~----~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG----CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred hhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc----cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 44445555544555568899999999999987666666533 22466777766655555443322 2332
Q ss_pred --ceEEEcchhhchh-hhcCCCccEEEEC
Q 025180 97 --ADLINTDIASGLE-KRLAGLVDVMVVN 122 (256)
Q Consensus 97 --~~~~~~d~~~~~~-~~~~~~fD~Ii~n 122 (256)
.+.+++++.+... .......++|+.|
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEe
Confidence 2677777765532 1124567888886
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=80.95 E-value=20 Score=30.75 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.+|+=+|+|. .+..++..+... ++.|+.+|.++...+.+
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKAL--GANVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 579999999864 555566666543 56999999998765444
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=80.87 E-value=29 Score=28.37 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=49.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
..+++||=.|. +|.++..+++.+.++ +++|+.+|.++...+...+. .+....++..|+.+... .. .
T Consensus 8 ~~~k~vlItG~-sg~IG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 8 HNGRVALVTGA-ARGIGLGIAAWLIAE--GWQVVLADLDRERGSKVAKA---LGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cCCCEEEEeCC-cchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHH---cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678886665 466777788877654 56899999886544332222 12223677777765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.+..+.
T Consensus 82 ~g~id~li~~ag~~ 95 (255)
T PRK05717 82 FGRLDALVCNAAIA 95 (255)
T ss_pred hCCCCEEEECCCcc
Confidence 14689999987654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.56 E-value=9.7 Score=31.23 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA--GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 568888888 5777888888887654 5689999998887776666665444444667777765321 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=13 Score=32.27 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4577777776 455677777777654 5789999999888877777666555554566777654321 10 12
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|--+
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 579999998654
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=80.43 E-value=7.2 Score=33.34 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+.+.+|.-+|+|...++..++. .| +.|.+||+++..+..-+-.+.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr-----~P-a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR-----AP-ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc-----CC-ceeEEEeCCHHHHHHHHHHHH
Confidence 5678999999997765433333 35 499999999999887665554
|
|
| >PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins [] | Back alignment and domain information |
|---|
Probab=80.35 E-value=4.5 Score=31.14 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..||.||...| +......-.|..+...|++||.++++.....-..-+.+.+..++
T Consensus 68 ~~~D~vvly~P----------------------KaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 68 QDFDTVVLYWP----------------------KAKAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp TT-SEEEEE------------------------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred cCCCEEEEEcc----------------------CcHHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 57999999655 22334667789999999999999999887777778888887764
|
; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=80.07 E-value=35 Score=28.74 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=69.0
Q ss_pred CCCCEEEEecccccH---HH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGY---VI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~---~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f 116 (256)
..+.+||-+|+|+-- .+ .-+.+++. .++-++-.|+.+-.-+ ....+.+|......+ .+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP---~~ailvDnDi~d~vSD-----------a~~~~~~Dc~t~~~~---~k~ 122 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLP---EDAILVDNDIRDYVSD-----------ADQSIVGDCRTYMPP---DKF 122 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS----TT-EEEEEESS--B-S-----------SSEEEES-GGGEEES---S-E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCC---CCcEEEecchhhhccc-----------cCCceeccccccCCC---Ccc
Confidence 367899999988531 11 22344431 2567777787664311 126788898887654 699
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCC--cHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGEN--GRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+||++.= ..... ..+++. ...+...+..-+.+.|+-||.+++-.--.....++-+.+....+-..
T Consensus 123 DlIiSDmY-d~~~k-----------~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~ 190 (299)
T PF06460_consen 123 DLIISDMY-DGRTK-----------NCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTC 190 (299)
T ss_dssp EEEEE-----TTS------------SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEE
T ss_pred cEEEEecc-ccccc-----------ccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEE
Confidence 99999742 10000 000100 01135566777888999999999854333334566666655544333
Q ss_pred EEEecCCCCccEEEEEEEe
Q 025180 195 IVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~ 213 (256)
..-..-......+++..-.
T Consensus 191 FcT~VNtSSSEaFLigiNY 209 (299)
T PF06460_consen 191 FCTAVNTSSSEAFLIGINY 209 (299)
T ss_dssp EEEGGGTTSS-EEEEEEEE
T ss_pred EecccCccccceeEEeeec
Confidence 3333333333344454433
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 256 | ||||
| 3q87_B | 170 | Structure Of Eukaryotic Translation Termination Com | 1e-13 | ||
| 2pjd_A | 343 | Crystal Structure Of 16s Rrna Methyltransferase Rsm | 1e-05 | ||
| 4dzr_A | 215 | The Crystal Structure Of Protein-(Glutamine-N5) Met | 4e-04 |
| >pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex Methyltransferase Mtq2-Trm112 Length = 170 | Back alignment and structure |
|
| >pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc Length = 343 | Back alignment and structure |
|
| >pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5) Methyltransferase (Release Factor-Specific) From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-50
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 36/199 (18%)
Query: 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIA 75
+ YEP +D++ L+DAL + + + +++G +G + L ++
Sbjct: 2 DWYEPGEDTYTLMDALEREGL-----EMKIVLDLGTSTGVITEQLR-------KRNTVVS 49
Query: 76 TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGR 135
TD+N A+E R +L+ D+ + + VDV+V NPPYVP +D
Sbjct: 50 TDLNIRALESHRGG--------NLVRADLLCSINQ---ESVDVVVFNPPYVPDTDDP--- 95
Query: 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195
GG GR VID+ + + G LYL+ + AN P ++ ++ E+GY RI
Sbjct: 96 -----IIGGGYLGREVIDRFVDAV-----TVGMLYLLVIEANRPKEVLARLEERGYGTRI 145
Query: 196 VVQRSTEEENLHIIKFWRD 214
+ R E ++IIK +
Sbjct: 146 LKVRKILGETVYIIKGEKS 164
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-18
Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 23/200 (11%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+DA LLA + + ++G G+G + + + + + + + E
Sbjct: 23 MDAMLLASLVADDRACRIA--DLGAGAG----AAGMAVAARLEKAEVTLYERSQEMAEFA 76
Query: 87 RKTLEAHN----------VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGRE 136
R++LE + + AD+ A +++NPPY +
Sbjct: 77 RRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDA 136
Query: 137 GIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI- 195
A A A E + + +A ++ G L L+ ++I + I
Sbjct: 137 LKAEAHAMTEGL---FEDWIRTASAIMVSGGQLSLI-SRPQSVAEIIAACGSRFGGLEIT 192
Query: 196 -VVQRSTEEENLHIIKFWRD 214
+ R E+ ++ +
Sbjct: 193 LIHPRPGEDAVRMLVTAIKG 212
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-17
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+ + +E+G G ++ ++ ++ + AT+++ E
Sbjct: 47 IFLKTFLRGGEVA-------LEIGTGHT----AMMALMAEKFFNCKVTATEVDEEFFEYA 95
Query: 87 RKTLEAHNV--HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
R+ +E +N N I G+ + G DV+ PPY P V E A G
Sbjct: 96 RRNIERNNSNVRLVKSNGGIIKGVVE---GTFDVIFSAPPYYDKPLGRVLTE--REAIGG 150
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYL 171
G+ G K+L A L+ G + L
Sbjct: 151 GKYGEEFSVKLLEEAFDHLNPGGKVAL 177
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-16
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ + + V+ +VG GSG + S+AL PGV A D++ A+ V
Sbjct: 17 LVEEAIRFLKRMPSGTRVI--DVGTGSGCIAVSIAL----ACPGVSVTAVDLSMDALAVA 70
Query: 87 RKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPTPE-DEVGREGI----A 139
R+ E D D L +V NPPY+PT E D++
Sbjct: 71 RRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPR 130
Query: 140 SAWAGGENGRAVIDKILPSADKLLSK-RGWLYL 171
A GGE+G ++ +L++ R ++L
Sbjct: 131 LALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 36/165 (21%)
Query: 11 VSSHPEVYEPCDDSFALVD---ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE 67
+ V+ S+ VD +L + + + + +L ++GCG G + + L E
Sbjct: 25 FKTDSGVF-----SYGKVDKGTKILVENVVVDKDDDIL--DLGCGYGV----IGIALADE 73
Query: 68 VPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVP 127
V DIN A+++ ++ ++ +N+ I + E + ++ NPP
Sbjct: 74 VKST--TMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI-- 129
Query: 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172
G+ V+ +I+ +LL G +++V
Sbjct: 130 ------------------RAGKEVLHRIIEEGKELLKDNGEIWVV 156
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ L + I V ++G GSG + S+A + ATD++ AVE+
Sbjct: 111 LVELAL-ELIRKYGIKTVA--DIGTGSGAIGVSVA-----KFSDAIVFATDVSSKAVEIA 162
Query: 87 RKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE---DEVGREGIASA 141
RK E H V + + +++ +++++ NPPYV + +V E A
Sbjct: 163 RKNAERHGVSDRFFVRKGEFLEPFKEKF-ASIEMILSNPPYVKSSAHLPKDVLFEP-PEA 220
Query: 142 WAGGENGRAVIDKILPSADKLLSKRGWLYL 171
GGE+G + + + + +
Sbjct: 221 LFGGEDGLDFYREFFG---RYDTSGKIVLM 247
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
LV+ LA + P +++G G+G + +LA E P + IA D P AV +
Sbjct: 98 LVEQALA----RLPEQPCRILDLGTGTGAIALALAS----ERPDCEIIAVDRMPDAVSLA 149
Query: 87 RKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIAS 140
++ + + + ++ +D S L ++V NPPY+ + +V E +
Sbjct: 150 QRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEP-LT 205
Query: 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYL 171
A ++G A I I+ + L G+L L
Sbjct: 206 ALVAADSGMADIVHIIEQSRNALVSGGFLLL 236
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-15
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89
LL + VL +VGCG+G L++ + P ++ D++ AVE +R T
Sbjct: 186 QLLLSTLTPHTKGKVL--DVGCGAGV----LSVAFARHSPKIRLTLCDVSAPAVEASRAT 239
Query: 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149
L A+ V ++ +++ S ++ R D+++ NPP+ G +
Sbjct: 240 LAANGVEGEVFASNVFSEVKGRF----DMIISNPPFH----------------DGMQTSL 279
Query: 150 AVIDKILPSADKLLSKRGWLYLV 172
++ A + L+ G L +V
Sbjct: 280 DAAQTLIRGAVRHLNSGGELRIV 302
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 5e-14
Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 14/193 (7%)
Query: 28 VDA-LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+DA LLA + +++ G+G + L+L + + +I ++
Sbjct: 35 IDAVLLAKFSY-LPIRKGKIIDLCSGNG----IIPLLLSTRTKA-KIVGVEIQERLADMA 88
Query: 87 RKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAG 144
++++ + + ++I D+ + D++ NPPY TP+ + A
Sbjct: 89 KRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR 148
Query: 145 GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA---RIVVQRST 201
E ++ + A LL + G V I M + + V RS
Sbjct: 149 HE-VMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIIDIMRKYRLEPKRIQFVHPRSD 206
Query: 202 EEENLHIIKFWRD 214
E N +++ +D
Sbjct: 207 REANTVLVEGIKD 219
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 25/164 (15%)
Query: 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
+ +H V+ + ++ ++GCG+G + L L + P
Sbjct: 195 IHNHANVFSRTGLDIG--ARFFMQHLPENLEGEIV--DLGCGNGV----IGLTLLDKNPQ 246
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS-GLEKRLAGLVDVMVVNPPYVPTP 129
+ + D +P AV +R +E + A + + L + ++ NPP+
Sbjct: 247 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH--- 303
Query: 130 EDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173
V ++ A + L G LY+V
Sbjct: 304 -------------QQHALTDNVAWEMFHHARRCLKINGELYIVA 334
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-10
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 14 HPEVYEPCDDSFALVDALLAD---RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
E P + D + + +++G G+ + +LG + G
Sbjct: 34 PLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGAS----CIYPLLGATLNG 89
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADL------INTDIASGLEKRLAGLVDVMVVNPP 124
++AT+++ +K +E +N+ + T + L++ + D + NPP
Sbjct: 90 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPP 149
Query: 125 YVPTPED 131
+ +
Sbjct: 150 FFANQLE 156
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-10
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105
+++G G G L L L + V + + + +V +K LEA+ + A +++D+
Sbjct: 237 VLDLGAGYGA----LTLPLARMGAEV--VGVEDDLASVLSLQKGLEANALKAQALHSDVD 290
Query: 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165
L + D++V NPP+ GG V + A L
Sbjct: 291 EALTE--EARFDIIVTNPPFH----------------VGGAVILDVAQAFVNVAAARLRP 332
Query: 166 RGWLYLVT 173
G +LV+
Sbjct: 333 GGVFFLVS 340
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84
HH L ++ +G GSG V+ A LG + + DI+P +
Sbjct: 103 HHETTRLALKALARHLRPGDKVLDLGTGSG-VLAIAAEKLGGKA-----LGVDIDPMVLP 156
Query: 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
+ + V + + + L G D++V N
Sbjct: 157 QAEANAKRNGVRPRFLEGSLEAALPF---GPFDLLVAN 191
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 38/179 (21%), Positives = 64/179 (35%), Gaps = 36/179 (20%)
Query: 31 LLADRI----NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86
+++ R+ + V +L +VG Y L + L + IA ++ +
Sbjct: 1 MISKRLELVASFVSQGAILL-DVGSDHAY----LPIELVERGQIKSAIAGEVVEGPYQSA 55
Query: 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGE 146
K +EAH + + I +A+GL D+V I A GG
Sbjct: 56 VKNVEAHGLK-EKIQVRLANGLA----------------AFEETDQV--SVITIAGMGGR 96
Query: 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
+I +IL L+ L L D +I L + G+ +IV + EE
Sbjct: 97 ----LIARILEEGLGKLANVERLILQPNNREDDLRIWL--QDHGF--QIVAESILEEAG 147
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 24/174 (13%), Positives = 51/174 (29%), Gaps = 32/174 (18%)
Query: 32 LADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91
L + + + + ++G Y L + IA ++ + +K +
Sbjct: 12 LEKVASYITKNERIA-DIGSDHAY----LPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR 66
Query: 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAV 151
+ + + I+ +GL E + + I A GG +
Sbjct: 67 SSGLT-EQIDVRKGNGLAVI------------------EKKDAIDTIVIAGMGGT----L 103
Query: 152 IDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
I IL L+ L+ Q+ + + I + E+N
Sbjct: 104 IRTILEEGAAKLAGVT--KLILQPNIAAWQLREWSEQNNW--LITSEAILREDN 153
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE 109
GSG + A LG P A D++ + + R+ A + + D A L
Sbjct: 212 TGSGTIALEAASTLG---PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD-ARHLP 267
Query: 110 KRLAGLVDVMVVNPPY 125
+ VD ++ NPP+
Sbjct: 268 RF-FPEVDRILANPPH 282
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 28/100 (28%)
Query: 41 HHP--VLCME--------------VGCGSGYVITSL-ALMLG-QEVPGVQYIATDINPYA 82
+H L M VG GSG I ++ A LG + V +ATDI+ +
Sbjct: 43 NHQTTQLAMLGIERAMVKPLTVADVGTGSG--ILAIAAHKLGAKSV-----LATDISDES 95
Query: 83 VEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122
+ + + ++ + + L + G D++V N
Sbjct: 96 MTAAEENAALNGIYDIAL---QKTSLLADVDGKFDLIVAN 132
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 9 RLVSSHPEVYEPCDDSFALVD-----ALLADRINLVEHHPVLCMEVGCGSGYVITSLALM 63
+V PE D ++ + +L +E+ + +G +TS+ALM
Sbjct: 136 EIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFV--LGDDD---LTSIALM 190
Query: 64 LGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVN 122
L + DI+ + K ++ D+ L D + +
Sbjct: 191 L--SGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248
Query: 123 PPYVP 127
PP
Sbjct: 249 PPETL 253
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGL 108
CGSG ++ LAL + I + + A V I D L
Sbjct: 226 CGSGTILIELALRR----YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ-L 280
Query: 109 EKRLAGLVDVMVVNPPY 125
+ VD + N PY
Sbjct: 281 SQY-VDSVDFAISNLPY 296
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 36/178 (20%)
Query: 32 LADRINLVEH---HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
L+ R+ V + ++VG Y L + L Q IA ++ + K
Sbjct: 8 LSKRLQKVANYVPKGARLLDVGSDHAY----LPIFLLQMGYCDFAIAGEVVNGPYQSALK 63
Query: 89 TLEAHNVHADLINTDIASGLEKRLAG-LVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN 147
+ H + I+ +A+GL +D + + GG
Sbjct: 64 NVSEHGLT-SKIDVRLANGLSAFEEADNIDTITI-------------------CGMGGR- 102
Query: 148 GRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEEN 205
+I IL + L L L N + + + IV + E +
Sbjct: 103 ---LIADILNNDIDKLQHVKTLVLQ--PNNREDDLRKWLAANDF--EIVAEDILTEND 153
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 5e-05
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106
++ G G+G ++ + +LG E A DI+P A+E ++ +
Sbjct: 56 IDAGTGNG-ILACGSYLLGAE----SVTAFDIDPDAIETAKRNCG---------GVNFMV 101
Query: 107 GLEKRLAGLVDVMVVNPPYVPTPED 131
++G D ++NPP+ +
Sbjct: 102 ADVSEISGKYDTWIMNPPFGSVVKH 126
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 50 GCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108
CG+ + T + + + V D++ + + + L++ D GL
Sbjct: 138 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GL 194
Query: 109 EKRLAGLVDVMVVNPPYVPTPEDEV 133
L VDV++ + P P+DE
Sbjct: 195 ANLLVDPVDVVISDLPVGYYPDDEN 219
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87
+ L VL + G G S+ + G + G+ +I+ ++
Sbjct: 11 LYRFLKYCNESNLDKTVL--DCGAGGDLPPLSIFVEDGYKTYGI-----EISDLQLKKAE 63
Query: 88 KTLEAHNVHADLINTDI 104
+N ++ DI
Sbjct: 64 NFSRENNFKLNISKGDI 80
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN----VHADLIN 101
+++G G+G L+ L ++ P + D++ +E+ + + + AD
Sbjct: 48 ILDLGAGTG----LLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK 103
Query: 102 TDI 104
D
Sbjct: 104 YDF 106
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85
++ LL VL E GCG G + ++L + P + + DI+P ++E
Sbjct: 23 ETLEKLLHHDTVYPPGAKVL--EAGCGIG----AQTVILAKNNPDAEITSIDISPESLEK 76
Query: 86 TRKTLEAHNV 95
R+ E + +
Sbjct: 77 ARENTEKNGI 86
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 2e-04
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTD 103
++ CG+G LA ++G + DI A+ T K L N+ LI D
Sbjct: 26 VVDATCGNGNDTAFLASLVG---ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK-D 81
Query: 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDE 132
++K + V ++ N Y+P+ +
Sbjct: 82 GHQNMDKYIDCPVKAVMFNLGYLPSGDHS 110
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 3e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101
H ++ GCG LAL E + Y A DI+ + +
Sbjct: 49 HVSSILDFGCGFN----PLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF 104
Query: 102 TDIASGLEKRLAGLV 116
+ S + K +V
Sbjct: 105 LNKESDVYKGTYDVV 119
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87
+ A L +R++ +++GCG GY + A +P + D++ A++
Sbjct: 74 IVAQLRERLD---DKATAVLDIGCGEGYYTHAFA----DALPEITTFGLDVSKVAIKAAA 126
Query: 88 KTL-EAHNVHADLINTDIASG 107
K + A +
Sbjct: 127 KRYPQVTFCVASSHRLPFSDT 147
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 4e-04
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 48 EVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104
+ GCG GY+ L +L G +Y D + R+ ++ + D
Sbjct: 28 DYGCGYGYLGLVLMPLLP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 81
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 23/120 (19%)
Query: 6 AQIRLVSSHPEVYEPCDDSFA-----------LVDALLADRINLVEHHP----VLCMEVG 50
+ +R + S Y F +D L I + +L +G
Sbjct: 3 SSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKIL--SIG 60
Query: 51 CGSGYVITSLALMLGQEVPGV--QYIATDINPYAVEVTRKTLEAH----NVHADLINTDI 104
G+G + + + + PGV + + + ++ + NV
Sbjct: 61 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 120
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 5e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 31 LLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYI-ATDINPYAVEVTRKT 89
L + + PV + SG L E V+ A DI+ A+E+ ++
Sbjct: 41 LGLEYLCKKLGRPVKVADPLSASGIRAIRFLL----ETSCVEKAYANDISSKAIEIMKEN 96
Query: 90 LEAHNVHADLINT---DIASGLEKRLAGLVDVMVVNPPYVPTP 129
+ +N+ D + L K D + ++P P P
Sbjct: 97 FKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVP 139
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 7e-04
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASG- 107
GSG ++ +++ +P Q A DI +E+ L + + I
Sbjct: 330 AGSGNLLATVSAGFNNVMPR-QIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGED 388
Query: 108 ---LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150
L V V+V+NPPYV D + A R
Sbjct: 389 VCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRP 434
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 26/154 (16%), Positives = 43/154 (27%), Gaps = 34/154 (22%)
Query: 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88
LL ++ L E+GC +G LA + D+ P A+ +
Sbjct: 40 TQLLRLSLSSGAVSNGL--EIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQ 91
Query: 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGE 146
H TDI A L D++VV Y+
Sbjct: 92 RT-KRWSHISWAATDILQFST---AELFDLIVVAEVLYYLEDMTQ--------------- 132
Query: 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180
+ + + K+L+ G L +
Sbjct: 133 -----MRTAIDNMVKMLAPGGHLVFGSARDATCR 161
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 9e-04
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 20/128 (15%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI 104
++ G+G L V A D+ A+ T + L + + +LI
Sbjct: 26 VVDATMGNGND----TAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIENTELILDGH 79
Query: 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164
+ L+ + + + N Y+P+ + V I+KIL L
Sbjct: 80 EN-LDHYVREPIRAAIFNLGYLPSADKSV--------ITKPHTTLEAIEKIL----DRLE 126
Query: 165 KRGWLYLV 172
G L ++
Sbjct: 127 VGGRLAIM 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.93 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.93 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.9 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.9 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.89 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.88 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.86 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.84 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.83 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.8 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.79 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.78 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.78 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.78 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.78 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.77 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.77 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.77 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.77 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.77 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.77 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.76 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.76 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.76 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.76 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.76 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.75 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.75 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.75 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.75 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.74 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.74 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.74 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.74 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.74 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.74 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.74 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.74 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.74 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.73 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.73 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.73 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.73 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.73 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.73 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.73 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.73 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.72 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.72 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.72 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.72 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.72 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.71 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.71 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.71 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.71 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.7 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.7 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.7 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.69 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.69 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.69 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.69 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.69 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.69 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.69 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.69 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.69 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.69 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.69 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.68 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.68 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.68 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.68 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.68 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.67 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.67 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.67 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.67 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.67 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.67 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.67 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.67 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.67 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.67 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.67 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.67 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.66 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.66 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.66 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.66 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.66 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.66 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.65 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.65 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.65 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.65 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.65 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.65 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.64 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.64 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.64 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.64 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.64 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.64 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.63 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.63 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.63 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.63 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.63 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.63 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.63 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.62 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.62 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.62 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.62 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.61 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.61 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.61 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.6 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.6 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.6 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.6 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.6 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.6 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.6 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.6 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.6 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.59 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.59 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.59 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.59 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.59 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.59 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.59 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.59 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.58 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.58 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.58 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.57 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.57 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.57 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.57 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.57 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.57 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.56 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.56 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.56 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.56 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.54 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.54 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.54 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.53 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.53 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.53 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.52 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.52 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.52 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.52 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.52 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.51 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.51 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.51 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.51 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.5 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.5 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.5 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.5 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.5 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.49 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.48 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.48 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.48 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.47 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.46 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.46 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.44 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.44 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.43 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.42 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.41 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.4 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.38 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.36 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.36 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.36 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.32 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.31 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.31 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.31 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.29 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.29 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.28 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.28 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.27 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.27 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.25 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.25 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.21 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.21 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.19 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.15 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.15 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.15 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.13 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.12 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.08 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.06 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.04 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.01 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.98 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.82 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.7 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.58 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.56 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.45 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.39 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.39 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.31 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.29 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.27 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.25 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.17 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 98.16 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.09 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 98.08 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.06 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.02 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.0 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.95 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.89 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.84 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.81 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.79 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.78 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.75 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.66 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.64 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.61 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.54 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.52 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.49 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.47 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.46 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.37 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.31 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.19 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.96 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.76 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.71 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 96.65 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.61 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.58 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.54 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 96.41 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.39 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.36 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.3 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.28 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.28 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.26 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.25 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.15 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.11 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.08 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.03 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.02 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.99 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.94 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.92 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.91 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.89 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.89 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.85 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.84 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.83 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 95.82 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.8 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.8 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.74 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.73 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.68 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.65 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.62 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.48 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.36 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.26 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.25 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 95.23 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.15 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.14 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.14 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.04 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.97 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.96 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.9 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.84 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.8 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.76 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.75 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.75 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.66 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.56 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.43 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.31 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.13 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.1 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 93.97 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.82 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.79 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.76 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 93.75 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.57 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 93.53 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.45 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 93.38 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.36 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.3 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.26 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.16 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.14 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.04 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.03 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.92 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.88 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 92.83 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.66 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.66 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.58 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.34 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 92.32 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.3 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.16 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.15 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 92.09 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.98 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.95 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.94 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.82 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.68 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 91.66 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.54 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.45 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 91.36 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 91.3 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.98 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.92 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 90.79 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 90.59 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.31 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 90.09 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.05 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 90.04 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 89.95 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 89.75 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.7 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 89.52 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 89.4 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 89.14 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 89.1 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.09 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 89.03 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 89.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.9 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 88.52 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.45 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 88.43 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.34 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.24 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.16 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 88.16 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.14 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 88.1 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 88.07 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 88.03 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 87.95 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 87.94 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 87.74 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.6 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 87.59 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 87.57 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.44 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 87.31 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 87.07 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 86.99 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 86.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 86.93 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 86.93 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 86.92 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 86.92 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 86.79 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 86.66 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 86.66 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.63 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 86.13 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 86.1 | |
| 2dpm_A | 284 | M.dpnii 1, protein (adenine-specific methyltransfe | 86.06 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 86.05 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 85.96 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.91 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 85.87 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.84 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 85.74 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 85.58 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 85.49 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 85.48 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 85.2 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 84.99 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 84.53 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 84.49 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 84.44 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 84.38 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 84.34 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 84.23 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 84.11 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 84.01 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 83.88 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 83.67 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.37 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 83.03 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 83.01 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 82.99 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 82.95 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 82.91 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 82.91 |
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-26 Score=182.24 Aligned_cols=191 Identities=22% Similarity=0.249 Sum_probs=125.9
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 12 SSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+.+++|+|+++++.+++++++.+.. ..++.+|||+|||+|.+++.+++. .++++++|+|+++.+++.|++++.
T Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~~~~ 75 (215)
T 4dzr_A 2 EVGPDCLIPRPDTEVLVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALA----CPGVSVTAVDLSMDALAVARRNAE 75 (215)
T ss_dssp BCSGGGGSCCHHHHHHHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHH----CTTEEEEEEECC------------
T ss_pred cCCCCccCCCccHHHHHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHH
Confidence 46789999999999999999988753 147899999999999999888887 677899999999999999999998
Q ss_pred HcCCcceEEEcchhhchhh--hcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 92 AHNVHADLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.++...+++++|+.+.... ...++||+|++||||+..... .....++..++.++..+...+..+++.+.++||
T Consensus 76 ~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 155 (215)
T 4dzr_A 76 RFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA 155 (215)
T ss_dssp -------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBC
T ss_pred HhCCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc
Confidence 8877558889998874432 123789999999999876543 223345556666777777788999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHH--HcCCcEEEEEecCCCCccEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMM--EKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~l 208 (256)
|||+++++.........+.+.+. +.||....+........++.+
T Consensus 156 pgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~ 201 (215)
T 4dzr_A 156 RGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIA 201 (215)
T ss_dssp SSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEE
T ss_pred CCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEE
Confidence 99995555666777888999998 889987777776666655443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=180.92 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=155.4
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.++++.|+++++.+++.+++.+. .++.+|||+|||+|.+++.++.. .++++|+|+|+|+.+++.|++|
T Consensus 81 ~~~~~~~~~ipr~~te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~n 152 (276)
T 2b3t_A 81 PLFVSPATLIPRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASE----RPDCEIIAVDRMPDAVSLAQRN 152 (276)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHH----CTTSEEEEECSSHHHHHHHHHH
T ss_pred eEEeCCCCcccCchHHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 355789999999999999999998864 36789999999999999988876 5778999999999999999999
Q ss_pred HHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 90 LEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++. .+++++|+.+... .++||+|++||||+.... .++...++..++.++..+...+..++..+.++|+
T Consensus 153 ~~~~~~~~v~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk 229 (276)
T 2b3t_A 153 AQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 229 (276)
T ss_dssp HHHHTCCSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred HHHcCCCceEEEEcchhhhcc---cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC
Confidence 9998876 4899999887532 468999999999987654 1344566777777777777888999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
|||++++.. +.....++.+.+.+.||....+.....+.+++++
T Consensus 230 pgG~l~~~~-~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~ 272 (276)
T 2b3t_A 230 SGGFLLLEH-GWQQGEAVRQAFILAGYHDVETCRDYGDNERVTL 272 (276)
T ss_dssp EEEEEEEEC-CSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEE
T ss_pred CCCEEEEEE-CchHHHHHHHHHHHCCCcEEEEEecCCCCCcEEE
Confidence 999999954 4566788999999999987777777777666554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=165.48 Aligned_cols=189 Identities=20% Similarity=0.242 Sum_probs=134.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+...+.+|.|+++++.+. +... ..++.+|||+||| +|.+++.+++.. +.+|+|+|+++.+++.|++|
T Consensus 31 ~~~~~~~~~p~~~~~~l~---~~~~----~~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~ 98 (230)
T 3evz_A 31 IEYHPKGLVTTPISRYIF---LKTF----LRGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRN 98 (230)
T ss_dssp CCCCTTSCCCCHHHHHHH---HHTT----CCSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHH
T ss_pred eecCCCeEeCCCchhhhH---hHhh----cCCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHH
Confidence 557788999988776552 2222 1478999999999 999999888863 46899999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025180 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+..+++..+++++|+.... +..+++||+|++||||+....... .++..++.++..+...+..+++.+.++|||||++
T Consensus 99 ~~~~~~~v~~~~~d~~~~~-~~~~~~fD~I~~npp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 175 (230)
T 3evz_A 99 IERNNSNVRLVKSNGGIIK-GVVEGTFDVIFSAPPYYDKPLGRV--LTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKV 175 (230)
T ss_dssp HHHTTCCCEEEECSSCSST-TTCCSCEEEEEECCCCC-----------------CCSSSCHHHHHHHHHHGGGEEEEEEE
T ss_pred HHHhCCCcEEEeCCchhhh-hcccCceeEEEECCCCcCCccccc--cChhhhhccCccchHHHHHHHHHHHHHhCCCeEE
Confidence 9999886699999964332 223478999999999998776443 3344556666667777899999999999999999
Q ss_pred EEEEeCC-CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025180 170 YLVTLTA-NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+++.+.. ....++.+.+.+.||....+..... .....++.+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g-~~~~~~l~f~~~~ 221 (230)
T 3evz_A 176 ALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG-TRWRHSLIFFKGI 221 (230)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC-C-CEEEEEEECCC
T ss_pred EEEecccHhHHHHHHHHHHHcCCceEEEEecCC-CeEEEEEEEeccc
Confidence 9977644 3456788899999997766655433 4444556665543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=169.93 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=139.1
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.||++++.+++++++.+.. .++.+|||+|||+|.+++.++.. ++++|+|+|+|+.+++.|++|+
T Consensus 95 ~~v~~~~lipr~~te~lv~~~l~~~~~---~~~~~vLDlG~GsG~~~~~la~~-----~~~~v~~vDis~~al~~A~~n~ 166 (284)
T 1nv8_A 95 FLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARKNA 166 (284)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCceecChhHHHHHHHHHHHhcc---cCCCEEEEEeCchhHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHH
Confidence 667899999999999999999887642 35689999999999998888775 4679999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCc---cEEEECCCCCCCCC---cccccccchhhhcCCCCcHHHHHHHHHHHh-h
Q 025180 91 EAHNVH--ADLINTDIASGLEKRLAGLV---DVMVVNPPYVPTPE---DEVGREGIASAWAGGENGRAVIDKILPSAD-K 161 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~f---D~Ii~npP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 161 (256)
..+++. .+++++|+.+... ++| |+|++||||..... .++. .++..++.++.++. .+++.+. +
T Consensus 167 ~~~~l~~~v~~~~~D~~~~~~----~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl----~~~~~i~~~ 237 (284)
T 1nv8_A 167 ERHGVSDRFFVRKGEFLEPFK----EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGL----DFYREFFGR 237 (284)
T ss_dssp HHTTCTTSEEEEESSTTGGGG----GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSC----HHHHHHHHH
T ss_pred HHcCCCCceEEEECcchhhcc----cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHH----HHHHHHHHh
Confidence 999886 4899999987543 478 99999999987554 2334 67788888877764 5677777 8
Q ss_pred ccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025180 162 LLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 162 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
.|+|||++++. .+..+.+.+.+.+.+. .+.....+.+++.+
T Consensus 238 ~l~pgG~l~~e-~~~~q~~~v~~~~~~~-----~~~~D~~g~~R~~~ 278 (284)
T 1nv8_A 238 YDTSGKIVLME-IGEDQVEELKKIVSDT-----VFLKDSAGKYRFLL 278 (284)
T ss_dssp CCCTTCEEEEE-CCTTCHHHHTTTSTTC-----EEEECTTSSEEEEE
T ss_pred cCCCCCEEEEE-ECchHHHHHHHHHHhC-----CeecccCCCceEEE
Confidence 99999999984 5566666777766554 45566666666544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=164.55 Aligned_cols=192 Identities=16% Similarity=0.196 Sum_probs=134.7
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccC-CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEH-HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~-~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
-.++.|.+..|+.++..++ . .. ++.+|||+|||+|.+++.+++. .+. +|+|+|+++.+++.|++|+.
T Consensus 26 q~~~~~~~~~d~~ll~~~~-----~--~~~~~~~vLDlG~G~G~~~~~la~~----~~~-~v~gvDi~~~~~~~a~~n~~ 93 (259)
T 3lpm_A 26 QSPSVFSFSIDAVLLAKFS-----Y--LPIRKGKIIDLCSGNGIIPLLLSTR----TKA-KIVGVEIQERLADMAKRSVA 93 (259)
T ss_dssp EBTTTBCCCHHHHHHHHHC-----C--CCSSCCEEEETTCTTTHHHHHHHTT----CCC-EEEEECCSHHHHHHHHHHHH
T ss_pred eCCCCccCcHHHHHHHHHh-----c--CCCCCCEEEEcCCchhHHHHHHHHh----cCC-cEEEEECCHHHHHHHHHHHH
Confidence 3466788877766655543 1 24 6789999999999998877765 443 99999999999999999999
Q ss_pred HcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025180 92 AHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 ~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.+++. .+++++|+.+....+..++||+|++||||+................... .....+..+++.+.++|+|||++
T Consensus 94 ~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~l~~~~~~LkpgG~l 172 (259)
T 3lpm_A 94 YNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH-EVMCTLEDTIRVAASLLKQGGKA 172 (259)
T ss_dssp HTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred HCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhc-cccCCHHHHHHHHHHHccCCcEE
Confidence 99986 3899999988765444689999999999987633221111111111111 11234678999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHcCCcEEE---EEecCCCCccEEEEEEEecCccc
Q 025180 170 YLVTLTANDPSQICLQMMEKGYAARI---VVQRSTEEENLHIIKFWRDFDIQ 218 (256)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 218 (256)
+++.+ .....++...+.+.+|.... +++.......++++++.|.....
T Consensus 173 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~~~~ 223 (259)
T 3lpm_A 173 NFVHR-PERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDGKPG 223 (259)
T ss_dssp EEEEC-TTTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEETCCSC
T ss_pred EEEEc-HHHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeCCCCC
Confidence 99765 44577888889999987654 44556677788999999876544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=152.32 Aligned_cols=164 Identities=30% Similarity=0.538 Sum_probs=128.5
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.+|+|+++++.+++.+... ..++.+|||+|||+|.+++.+++. + +|+|+|+++.+++. ..
T Consensus 2 ~v~~P~~~~~~l~~~l~~~-----~~~~~~vLD~GcG~G~~~~~l~~~----~---~v~gvD~s~~~~~~--------~~ 61 (170)
T 3q87_B 2 DWYEPGEDTYTLMDALERE-----GLEMKIVLDLGTSTGVITEQLRKR----N---TVVSTDLNIRALES--------HR 61 (170)
T ss_dssp CSCCCCHHHHHHHHHHHHH-----TCCSCEEEEETCTTCHHHHHHTTT----S---EEEEEESCHHHHHT--------CS
T ss_pred cccCcCccHHHHHHHHHhh-----cCCCCeEEEeccCccHHHHHHHhc----C---cEEEEECCHHHHhc--------cc
Confidence 5899999999999985432 136789999999999988776654 3 89999999999987 12
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+++++|+.+... +++||+|++||||+..++... +.++..+. .++..+.+.| |||+++++...
T Consensus 62 ~~~~~~~d~~~~~~---~~~fD~i~~n~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 62 GGNLVRADLLCSIN---QESVDVVVFNPPYVPDTDDPI--------IGGGYLGR----EVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp SSCEEECSTTTTBC---GGGCSEEEECCCCBTTCCCTT--------TBCCGGGC----HHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCeEEECChhhhcc---cCCCCEEEECCCCccCCcccc--------ccCCcchH----HHHHHHHhhC-CCCEEEEEEec
Confidence 34899999987433 378999999999987666432 33444433 4455555566 99999998888
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025180 176 ANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
.....++.+.+++.||....+.......++++.+...++.
T Consensus 126 ~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~~~~ 165 (170)
T 3q87_B 126 ANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEKSH 165 (170)
T ss_dssp GGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEECC-
T ss_pred CCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEEEeccc
Confidence 8888999999999999999998888888999888877654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=159.73 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCc--ceEEEcchhhchh-----h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVH--ADLINTDIASGLE-----K 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~--~~~~~~d~~~~~~-----~ 110 (256)
.++.+|||+|||+|.+++.++.. .++..|+|+|+++.+++.|++|+.. +++. .+++++|+.+... .
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~----~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAAR----LEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHH----CTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence 46789999999999999888887 6678999999999999999999988 8876 3899999988743 1
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+.+++||+|++||||+..............++..... .+..+++.+.++|||||+++++.+.. ...++...+.+.
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~- 185 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEG---LFEDWIRTASAIMVSGGQLSLISRPQ-SVAEIIAACGSR- 185 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------C---CHHHHHHHHHHHEEEEEEEEEEECGG-GHHHHHHHHTTT-
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcC---CHHHHHHHHHHHcCCCCEEEEEEcHH-HHHHHHHHHHhc-
Confidence 2357899999999998764211111111112211111 26788999999999999999977654 456677777664
Q ss_pred CcEEE---EEecCCCCccEEEEEEEecCccc
Q 025180 191 YAARI---VVQRSTEEENLHIIKFWRDFDIQ 218 (256)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 218 (256)
|.... ++........++++++.|.....
T Consensus 186 ~~~~~i~~v~~~~~~~~~~~lv~~~k~~~~~ 216 (260)
T 2ozv_A 186 FGGLEITLIHPRPGEDAVRMLVTAIKGSRAR 216 (260)
T ss_dssp EEEEEEEEEESSTTSCCCEEEEEEEETCCCC
T ss_pred CCceEEEEEcCCCCCCceEEEEEEEeCCCCC
Confidence 65433 44556677788999999976544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=150.05 Aligned_cols=184 Identities=14% Similarity=0.215 Sum_probs=123.4
Q ss_pred eeccCCccccC----CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 11 VSSHPEVYEPC----DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 11 ~~~~~~~~~p~----~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
+.+.++++.|+ +++..+++.++..+... ..++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|
T Consensus 31 ~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~-~~~~~~vLDlG~G~G~~~~~la~~----~~~~~v~gvD~s~~~~~~a 105 (254)
T 2h00_A 31 IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSD-KSTLRRGIDIGTGASCIYPLLGAT----LNGWYFLATEVDDMCFNYA 105 (254)
T ss_dssp CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGG-GCCCCEEEEESCTTTTHHHHHHHH----HHCCEEEEEESCHHHHHHH
T ss_pred eecCccccCCCccchHHHHHHHHHHHhhcccc-CCCCCEEEEeCCChhHHHHHHHHh----CCCCeEEEEECCHHHHHHH
Confidence 55778899998 45666666665543210 125789999999999998888876 3467999999999999999
Q ss_pred HHHHHHcCCc--ceEEEcchhhc-hhhhc---CCCccEEEECCCCCCCCCc-------ccccccchhhhcCCC-------
Q 025180 87 RKTLEAHNVH--ADLINTDIASG-LEKRL---AGLVDVMVVNPPYVPTPED-------EVGREGIASAWAGGE------- 146 (256)
Q Consensus 87 ~~~~~~~~~~--~~~~~~d~~~~-~~~~~---~~~fD~Ii~npP~~~~~~~-------~~~~~~~~~~~~~~~------- 146 (256)
++|+..+++. .+++++|+.+. ...+. +++||+|++||||+..... .....++...+.+..
T Consensus 106 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg 185 (254)
T 2h00_A 106 KKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG 185 (254)
T ss_dssp HHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHH
T ss_pred HHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence 9999998876 48999997652 22222 2589999999999875511 111112222333222
Q ss_pred CcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025180 147 NGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
....+...++....+.|+++|.++..........++.+.+++.||....+...
T Consensus 186 G~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 186 GELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp THHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEE
Confidence 33456667777778889999988875444444478889999999987655443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=143.81 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=103.6
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
..+|+.+..+.+.+.+.+......++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++|+..++++.
T Consensus 20 ~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 94 (189)
T 3p9n_A 20 RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-----GAASVLFVESDQRSAAVIARNIEALGLSG 94 (189)
T ss_dssp CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-----TCSEEEEEECCHHHHHHHHHHHHHHTCSC
T ss_pred CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-----CCCeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 4555566777777776664332347899999999999998876653 34589999999999999999999998744
Q ss_pred -eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEe
Q 025180 98 -DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTL 174 (256)
Q Consensus 98 -~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 174 (256)
+++++|+.+......+++||+|++||||.... .....++..+.+ +|+|||++++...
T Consensus 95 v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~--------------------~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 95 ATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS--------------------ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEEEESCHHHHHHHCCSSCCSEEEECCCTTSCH--------------------HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred eEEEEccHHHHHhhccCCCccEEEECCCCCcch--------------------hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 99999998876544468899999999986421 236788888888 9999999999765
Q ss_pred CC
Q 025180 175 TA 176 (256)
Q Consensus 175 ~~ 176 (256)
..
T Consensus 155 ~~ 156 (189)
T 3p9n_A 155 TT 156 (189)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=140.50 Aligned_cols=163 Identities=16% Similarity=0.104 Sum_probs=117.7
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+.++.|++++ ...++. +.+ ..++.+|||+|||+|.+++.++.. .|++.++|+|+++.+++.|++++..
T Consensus 18 ~~~~~~~~~p~~-~~~~~~-~~f----~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~a~~~~~~ 87 (214)
T 1yzh_A 18 ANPQYVVLNPLE-AKAKWR-DLF----GNDNPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALDKVLE 87 (214)
T ss_dssp TCTTTEECCGGG-TTTTHH-HHH----TSCCCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred hCCCEEecChhh-cccCHH-HHc----CCCCCeEEEEccCcCHHHHHHHHH----CCCCCEEEEEcCHHHHHHHHHHHHH
Confidence 456677777754 222222 222 246789999999999999988887 6788999999999999999999998
Q ss_pred cCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 93 HNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.. .++++|+.+....+.+++||+|++++|-.... ..++... .....++..+.++|+|||++++
T Consensus 88 ~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~----~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 88 VGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPK----KRHEKRR---------LTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp HCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCS----GGGGGGS---------TTSHHHHHHHHHHSCTTCEEEE
T ss_pred cCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccc----cchhhhc---------cCCHHHHHHHHHHcCCCcEEEE
Confidence 88754 89999998743223457899999997632111 0011110 0146889999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 172 VTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.+........+.+.+.+.||....+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 155 KTDNRGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred EeCCHHHHHHHHHHHHHCCCeeeeccc
Confidence 765444456777888888988765554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=142.79 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=88.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|..++.+++.+. .++++|+|+|+|+.|++.|++++...+.. .+++++|+.+.. .+.||+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~--~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~ 142 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----IENASM 142 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCC--SSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC----CCSEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcC--CCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc----cccccc
Confidence 5889999999999999988887654 35789999999999999999999877654 389999987752 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....++++++++|||||++++...
T Consensus 143 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 143 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeeeecCch-------------------hHhHHHHHHHHHcCCCcEEEEEec
Confidence 9997654433221 246789999999999999998764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-18 Score=146.42 Aligned_cols=154 Identities=22% Similarity=0.180 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceE
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~ 99 (256)
.+..+.++..++..... .++.+|||+|||+|.++++++.+.+ ++..++|+|+++.+++.|++|+...++. .++
T Consensus 185 a~l~~~la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~---~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~ 258 (354)
T 3tma_A 185 GSLTPVLAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLG---PTSPVYAGDLDEKRLGLAREAALASGLSWIRF 258 (354)
T ss_dssp CSCCHHHHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHC---TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEE
T ss_pred CCcCHHHHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhC---CCceEEEEECCHHHHHHHHHHHHHcCCCceEE
Confidence 33456677777665432 4678999999999999999998741 5679999999999999999999999875 499
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
.++|+.+...+ ...||+|++||||....... ......+..+++.+.++|+|||+++++++. .
T Consensus 259 ~~~D~~~~~~~--~~~~D~Ii~npPyg~r~~~~-------------~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~---~ 320 (354)
T 3tma_A 259 LRADARHLPRF--FPEVDRILANPPHGLRLGRK-------------EGLFHLYWDFLRGALALLPPGGRVALLTLR---P 320 (354)
T ss_dssp EECCGGGGGGT--CCCCSEEEECCCSCC----C-------------HHHHHHHHHHHHHHHHTSCTTCEEEEEESC---H
T ss_pred EeCChhhCccc--cCCCCEEEECCCCcCccCCc-------------ccHHHHHHHHHHHHHHhcCCCcEEEEEeCC---H
Confidence 99999887433 35689999999997533211 001234578899999999999999998752 3
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 025180 180 SQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~~~ 199 (256)
..+...+. .||+.......
T Consensus 321 ~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 321 ALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp HHHHHHCC-TTEEEEEEEEC
T ss_pred HHHHHHhh-cCcEEEEEEEE
Confidence 33444444 77776544433
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=136.73 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=115.0
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+.++.+.+++ ...+|.. .+ ..++.+|||+|||+|.+++.+++. .|++.++|+|+++.+++.|++++..
T Consensus 15 ~~~~~~~~~~~~-~~~~~~~-~f----~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~giD~s~~~l~~a~~~~~~ 84 (213)
T 2fca_A 15 ENADIAISNPAD-YKGKWNT-VF----GNDNPIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQKVKD 84 (213)
T ss_dssp HTTTTBCSCGGG-GTTCHHH-HH----TSCCCEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred hCccEEecCccc-cCCCHHH-Hc----CCCCceEEEEecCCCHHHHHHHHH----CCCCCEEEEEechHHHHHHHHHHHH
Confidence 455666666543 2233322 22 246789999999999999988887 7788999999999999999999998
Q ss_pred cCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 93 HNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.+ .++++|+.+....+.+++||.|+++.|-...... +. .... ....++..+.++|||||++++
T Consensus 85 ~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~----~~-~~rl--------~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 85 SEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKR----HE-KRRL--------TYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp SCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGG----GG-GGST--------TSHHHHHHHHHHHTTSCEEEE
T ss_pred cCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCcc----cc-cccc--------CcHHHHHHHHHHcCCCCEEEE
Confidence 88765 9999999874322446789999987542111000 00 0000 136889999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 172 VTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.+........+...+.+.||......
T Consensus 152 ~td~~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 152 KTDNRGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EeCCHHHHHHHHHHHHHCCCcccccc
Confidence 77544445667778888888765443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=140.16 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=102.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.+++.+++. ++. .|+|+|+++.+++.|++|+..+++.. +++++|+.+... .++||+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~----~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---~~~fD~ 195 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVY----GKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---ENIADR 195 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH----TCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---CSCEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHh----CCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---cCCccE
Confidence 46899999999999999999887 333 79999999999999999999999864 799999988754 578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC------CCCHHHHHHHHHHcCCc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT------ANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~~g~~ 192 (256)
|+++||+. ...++..+.++|+|||++++.+.. ......+.+.+.+.|+.
T Consensus 196 Vi~~~p~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 196 ILMGYVVR-------------------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD 250 (278)
T ss_dssp EEECCCSS-------------------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred EEECCchh-------------------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence 99999964 246688889999999999997765 24456788888999998
Q ss_pred EEE
Q 025180 193 ARI 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=133.13 Aligned_cols=135 Identities=17% Similarity=0.257 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+...++..+. ..++.+|||+|||+|.+++.+++. +|..+|+|+|+++.+++.|++++..++++. +++.+|
T Consensus 26 ~~i~~~~l~~l~---~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d 98 (204)
T 3e05_A 26 QEVRAVTLSKLR---LQDDLVMWDIGAGSASVSIEASNL----MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF 98 (204)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEETCTTCHHHHHHHHH----CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC
T ss_pred HHHHHHHHHHcC---CCCCCEEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 444455555543 257899999999999999888887 667899999999999999999999888754 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.... ..+||+|+++.++. ....+++.+.++|+|||++++.........++.
T Consensus 99 ~~~~~~~--~~~~D~i~~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 152 (204)
T 3e05_A 99 APEGLDD--LPDPDRVFIGGSGG------------------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAV 152 (204)
T ss_dssp TTTTCTT--SCCCSEEEESCCTT------------------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHH
T ss_pred hhhhhhc--CCCCCEEEECCCCc------------------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHH
Confidence 8766443 26799999987653 157889999999999999999877666677889
Q ss_pred HHHHHcCCc
Q 025180 184 LQMMEKGYA 192 (256)
Q Consensus 184 ~~~~~~g~~ 192 (256)
+.+.+.||.
T Consensus 153 ~~l~~~g~~ 161 (204)
T 3e05_A 153 EFLEDHGYM 161 (204)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHCCCc
Confidence 999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-18 Score=147.52 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=113.2
Q ss_pred eeeccCCccc---cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 10 LVSSHPEVYE---PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 10 ~~~~~~~~~~---p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+...|++|. +...++.+.+.+.+.+.. ...++.+|||+|||+|.+++.+++. +++|+++|+++.+++.|
T Consensus 199 ~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A 271 (381)
T 3dmg_A 199 TFHHLPGVFSAGKVDPASLLLLEALQERLGP-EGVRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSL 271 (381)
T ss_dssp EEEECTTCTTTTSCCHHHHHHHHHHHHHHCT-TTTTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHH
T ss_pred EEEeCCCceeCCCCCHHHHHHHHHHHHhhcc-cCCCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHH
Confidence 3667888887 444578888888775421 1236789999999999999888775 45999999999999999
Q ss_pred HHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 87 RKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
++|+..+++..+++.+|+.+...+ .++||+|++||||+..... .......++..+.++|+||
T Consensus 272 ~~n~~~~~~~v~~~~~D~~~~~~~--~~~fD~Ii~npp~~~~~~~----------------~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 272 QKGLEANALKAQALHSDVDEALTE--EARFDIIVTNPPFHVGGAV----------------ILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp HHHHHHTTCCCEEEECSTTTTSCT--TCCEEEEEECCCCCTTCSS----------------CCHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHcCCCeEEEEcchhhcccc--CCCeEEEEECCchhhcccc----------------cHHHHHHHHHHHHHhcCcC
Confidence 999999998889999999886432 4789999999999753221 1234678999999999999
Q ss_pred eEEEEEEeCCC
Q 025180 167 GWLYLVTLTAN 177 (256)
Q Consensus 167 G~l~~~~~~~~ 177 (256)
|+++++.....
T Consensus 334 G~l~iv~n~~l 344 (381)
T 3dmg_A 334 GVFFLVSNPFL 344 (381)
T ss_dssp EEEEEEECTTS
T ss_pred cEEEEEEcCCC
Confidence 99999876544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-18 Score=132.14 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..++ ..+++.++.+++.+++.+... .++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++++..
T Consensus 18 ~~~~-~~~rp~~~~~~~~~~~~l~~~--~~~~~vLD~GcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~ 89 (187)
T 2fhp_A 18 ALDG-DNTRPTTDKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSR-----GMDKSICIEKNFAALKVIKENIAI 89 (187)
T ss_dssp CCCC-CSSCCCCHHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCC-CCcCcCHHHHHHHHHHHHHhh--cCCCCEEEeCCccCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4443 367777788888888876432 36789999999999998877663 346899999999999999999999
Q ss_pred cCCc--ceEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccC
Q 025180 93 HNVH--ADLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKR 166 (256)
Q Consensus 93 ~~~~--~~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Lkpg 166 (256)
+++. .+++++|+.+..... ..++||+|++||||.... ...++..+ .++|+||
T Consensus 90 ~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~----------------------~~~~~~~l~~~~~L~~g 147 (187)
T 2fhp_A 90 TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE----------------------IVSQLEKMLERQLLTNE 147 (187)
T ss_dssp HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC----------------------HHHHHHHHHHTTCEEEE
T ss_pred hCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchh----------------------HHHHHHHHHHhcccCCC
Confidence 8874 489999998865422 257899999999975211 23445555 8899999
Q ss_pred eEEEEEEeCCC
Q 025180 167 GWLYLVTLTAN 177 (256)
Q Consensus 167 G~l~~~~~~~~ 177 (256)
|++++..+...
T Consensus 148 G~l~~~~~~~~ 158 (187)
T 2fhp_A 148 AVIVCETDKTV 158 (187)
T ss_dssp EEEEEEEETTC
T ss_pred CEEEEEeCCcc
Confidence 99999776554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-18 Score=134.74 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=92.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV- 95 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~- 95 (256)
.+.|.. ..+.+.+.+.+... .++.+|||+|||+|.+++.++.. + ...|+|+|+|+.+++.|++|+..+++
T Consensus 32 ~~rp~~--~~~~~~l~~~l~~~--~~~~~vLDlGcGtG~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~ 102 (201)
T 2ift_A 32 GLRPTG--DRVKETLFNWLMPY--IHQSECLDGFAGSGSLGFEALSR----Q-AKKVTFLELDKTVANQLKKNLQTLKCS 102 (201)
T ss_dssp --------CHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CcCcCH--HHHHHHHHHHHHHh--cCCCeEEEcCCccCHHHHHHHHc----c-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 344444 44445554444321 25789999999999998876654 2 24899999999999999999999987
Q ss_pred -c-ceEEEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEE
Q 025180 96 -H-ADLINTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLY 170 (256)
Q Consensus 96 -~-~~~~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~ 170 (256)
+ .+++++|+.+......+++ ||+|+++|||.. . ....++..+ .++|+|||+++
T Consensus 103 ~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~-~---------------------~~~~~l~~~~~~~~LkpgG~l~ 160 (201)
T 2ift_A 103 SEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF-N---------------------LAEQAISLLCENNWLKPNALIY 160 (201)
T ss_dssp TTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS-C---------------------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccceEEEECCHHHHHHhhccCCCCCEEEECCCCCC-c---------------------cHHHHHHHHHhcCccCCCcEEE
Confidence 3 4999999987654323568 999999999741 1 145667777 67899999999
Q ss_pred EEEeCCC
Q 025180 171 LVTLTAN 177 (256)
Q Consensus 171 ~~~~~~~ 177 (256)
+......
T Consensus 161 i~~~~~~ 167 (201)
T 2ift_A 161 VETEKDK 167 (201)
T ss_dssp EEEESSS
T ss_pred EEECCCC
Confidence 9776544
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=148.16 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=104.0
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+..+|++|.+... ......+++.+. ..++.+|||+|||+|.+++.+++. +|+.+|+|+|+++.+++.+++|+
T Consensus 195 ~~~~pg~Fs~~~~-d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~s~~la~~----~p~~~V~gvD~s~~al~~Ar~n~ 266 (375)
T 4dcm_A 195 IHNHANVFSRTGL-DIGARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSRLNV 266 (375)
T ss_dssp EEECTTCTTCSSC-CHHHHHHHHTCC---CSCCSEEEEETCTTCHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCcccCCcc-cHHHHHHHHhCc---ccCCCeEEEEeCcchHHHHHHHHH----CCCCEEEEEECcHHHHHHHHHHH
Confidence 5567888877332 111233344443 245689999999999999999887 77889999999999999999999
Q ss_pred HHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 91 EAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..+++. .+++.+|+.+.. .+++||+|++||||+...... ......+++.+.++||||
T Consensus 267 ~~ngl~~~~~v~~~~~D~~~~~---~~~~fD~Ii~nppfh~~~~~~----------------~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 267 ETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHALT----------------DNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp HHHCGGGGGGEEEEECSTTTTC---CTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHHEEEE
T ss_pred HHcCCCcCceEEEEechhhccC---CCCCeeEEEECCCcccCcccC----------------HHHHHHHHHHHHHhCCCC
Confidence 999865 367999988743 347899999999997532210 012457899999999999
Q ss_pred eEEEEEEeCCCCH
Q 025180 167 GWLYLVTLTANDP 179 (256)
Q Consensus 167 G~l~~~~~~~~~~ 179 (256)
|+++++.......
T Consensus 328 G~l~iv~n~~~~~ 340 (375)
T 4dcm_A 328 GELYIVANRHLDY 340 (375)
T ss_dssp EEEEEEEETTSCH
T ss_pred cEEEEEEECCcCH
Confidence 9999987655433
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-17 Score=130.57 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c-eEEEc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A-DLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~-~~~~~ 102 (256)
..+...++..+. ..++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++++..+++. . +++.+
T Consensus 41 ~~~~~~~l~~l~---~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~ 111 (204)
T 3njr_A 41 SPMRALTLAALA---PRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111 (204)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHhcC---CCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence 344444555543 257899999999999998888775 468999999999999999999999887 3 89999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
|+.+.... ..+||+|++++... .. +++.+.++|||||++++.........++
T Consensus 112 d~~~~~~~--~~~~D~v~~~~~~~-------------------------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 163 (204)
T 3njr_A 112 TAPAALAD--LPLPEAVFIGGGGS-------------------------QA-LYDRLWEWLAPGTRIVANAVTLESETLL 163 (204)
T ss_dssp CTTGGGTT--SCCCSEEEECSCCC-------------------------HH-HHHHHHHHSCTTCEEEEEECSHHHHHHH
T ss_pred chhhhccc--CCCCCEEEECCccc-------------------------HH-HHHHHHHhcCCCcEEEEEecCcccHHHH
Confidence 99885443 25799999975320 35 8999999999999999988766667788
Q ss_pred HHHHHHcCCcEEEEE
Q 025180 183 CLQMMEKGYAARIVV 197 (256)
Q Consensus 183 ~~~~~~~g~~~~~~~ 197 (256)
.+.+++.|++...+.
T Consensus 164 ~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 164 TQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHhCCCcEEEEE
Confidence 899999998765543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=128.60 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=84.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++++..++++. ++++.+..... ...+++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~fD~v 93 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD-HYVREPIRAA 93 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG-GTCCSCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH-hhccCCcCEE
Confidence 47899999999999998877764 5699999999999999999999888754 88887766542 2336789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++++|.+....... ........+++.+.++|||||+++++...
T Consensus 94 ~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 94 IFNLGYLPSADKSVI------------TKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEC-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEeCCCCCCcchhcc------------cChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 999888654322110 01123567789999999999999987653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-18 Score=132.59 Aligned_cols=146 Identities=17% Similarity=0.310 Sum_probs=112.3
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...+++|.|... ....+.+++.+. ..++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++
T Consensus 25 ~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~ 94 (194)
T 1dus_A 25 FKTDSGVFSYGKV-DKGTKILVENVV---VDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENI 94 (194)
T ss_dssp EEEETTSTTTTSC-CHHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHH
T ss_pred EEeCCCcCCcccc-chHHHHHHHHcc---cCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHH
Confidence 4466778888732 133344444443 247789999999999987766554 469999999999999999999
Q ss_pred HHcCCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 91 EAHNVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 91 ~~~~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
..+++. .+++.+|+.+... +++||+|++++||+.. ......+++.+.++|+|||
T Consensus 95 ~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~--------------------~~~~~~~l~~~~~~L~~gG 151 (194)
T 1dus_A 95 KLNNLDNYDIRVVHSDLYENVK---DRKYNKIITNPPIRAG--------------------KEVLHRIIEEGKELLKDNG 151 (194)
T ss_dssp HHTTCTTSCEEEEECSTTTTCT---TSCEEEEEECCCSTTC--------------------HHHHHHHHHHHHHHEEEEE
T ss_pred HHcCCCccceEEEECchhcccc---cCCceEEEECCCcccc--------------------hhHHHHHHHHHHHHcCCCC
Confidence 988875 5889999877533 4689999999998631 2236788999999999999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHc
Q 025180 168 WLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
++++..+......++.+.+.+.
T Consensus 152 ~l~~~~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 152 EIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EEEEEEESTHHHHHHHHHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHH
Confidence 9999888766566677777776
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-17 Score=134.88 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+.+.+...+ .++.+|||+|||+|.+++.+++. ++ +|+|+|+++.+++.+++|+..+++..++..+|
T Consensus 107 t~~~~~~l~~~~-----~~~~~VLDiGcG~G~l~~~la~~----g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d 175 (254)
T 2nxc_A 107 TRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKL----GG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHT----TC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred HHHHHHHHHHhc-----CCCCEEEEecCCCcHHHHHHHHh----CC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 445555554442 46899999999999998887764 33 99999999999999999999988777888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+..+ +++||+|++|+++ .....++..+.++|+|||+++++........++.
T Consensus 176 ~~~~~~---~~~fD~Vv~n~~~------------------------~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~ 228 (254)
T 2nxc_A 176 LEAALP---FGPFDLLVANLYA------------------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228 (254)
T ss_dssp HHHHGG---GCCEEEEEEECCH------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred hhhcCc---CCCCCEEEECCcH------------------------HHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHH
Confidence 877532 3689999998753 1256889999999999999999776666788899
Q ss_pred HHHHHcCCcEEEEEe
Q 025180 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.+.+.||.......
T Consensus 229 ~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 229 EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCEEEEEec
Confidence 999999998766544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-18 Score=131.81 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=95.1
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
|....+|+.++.+.+.+.+.+... .++.+|||+|||+|.+++.++.. +...|+|+|+++.+++.|++++..++
T Consensus 6 p~~~~~rp~~~~~~~~~~~~l~~~--~~~~~vLDlGcG~G~~~~~l~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~ 78 (177)
T 2esr_A 6 LDGKITRPTSDKVRGAIFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSR-----GMSAAVLVEKNRKAQAIIQDNIIMTK 78 (177)
T ss_dssp ------------CHHHHHHHHCSC--CCSCEEEEETCTTCHHHHHHHHT-----TCCEEEEECCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhh--cCCCeEEEeCCCCCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 344456666677778877776422 46789999999999998887764 34589999999999999999999888
Q ss_pred Cc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccCeEEE
Q 025180 95 VH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKRGWLY 170 (256)
Q Consensus 95 ~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~ 170 (256)
+. .+++.+|+.+..+. .+++||+|+++|||.. .....++..+. ++|+|||+++
T Consensus 79 ~~~~~~~~~~d~~~~~~~-~~~~fD~i~~~~~~~~----------------------~~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 79 AENRFTLLKMEAERAIDC-LTGRFDLVFLDPPYAK----------------------ETIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp CGGGEEEECSCHHHHHHH-BCSCEEEEEECCSSHH----------------------HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCceEEEECcHHHhHHh-hcCCCCEEEECCCCCc----------------------chHHHHHHHHHhCCCcCCCcEEE
Confidence 75 38999999885433 3467999999999841 12345566665 8999999999
Q ss_pred EEEeCCC
Q 025180 171 LVTLTAN 177 (256)
Q Consensus 171 ~~~~~~~ 177 (256)
+......
T Consensus 136 ~~~~~~~ 142 (177)
T 2esr_A 136 CETDKTV 142 (177)
T ss_dssp EEEETTC
T ss_pred EEECCcc
Confidence 9776554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=130.77 Aligned_cols=125 Identities=18% Similarity=0.295 Sum_probs=105.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +..+++|+|+++.+++.|++++..++.. .+++.+|+.+.. +++||+|
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~fD~i 129 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-----GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV----DGKFDLI 129 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC----CSCEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC----CCCceEE
Confidence 46899999999999998877653 3459999999999999999999998887 599999987642 4789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++. .+..+++.+.++|+|||++++.........++...+.+.||.......
T Consensus 130 ~~~~~~~------------------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 130 VANILAE------------------------ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp EEESCHH------------------------HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEE
T ss_pred EECCcHH------------------------HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeec
Confidence 9997741 257889999999999999999776666778899999999998766544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-17 Score=133.69 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025180 24 SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
.+++...++..+..+. ..++.+|||+|||+|.+++.++.. .|+++|+++|+++.+++.|++|+..+++.+ ++
T Consensus 59 ~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 59 EEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIV----RPELELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp HHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 4555555555543322 246789999999999999998887 678899999999999999999999999864 99
Q ss_pred EEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-
Q 025180 100 INTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN- 177 (256)
Q Consensus 100 ~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~- 177 (256)
+++|+.+.... ...++||+|+++-.- .+..+++.+.++|||||+++++.....
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~~-------------------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~ 189 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAVA-------------------------PLCVLSELLLPFLEVGGAAVAMKGPRVE 189 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESSC-------------------------CHHHHHHHHGGGEEEEEEEEEEECSCCH
T ss_pred EECcHHHhhcccccCCCceEEEECCcC-------------------------CHHHHHHHHHHHcCCCeEEEEEeCCCcH
Confidence 99999876432 224789999995210 157889999999999999998654322
Q ss_pred -CHHHHHHHHHHcCCcEEEEEec--CCCCccEEEEEEEe
Q 025180 178 -DPSQICLQMMEKGYAARIVVQR--STEEENLHIIKFWR 213 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~~ 213 (256)
...++.+.+...|+....+... ........++...+
T Consensus 190 ~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 190 EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 1234566777889887655433 22234445555554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=133.97 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
+++++.+++.+++.+......++.+|||+|||+|.+++.++.. .|+.+++|+|+++.+++.+++++..+++.. ++
T Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 119 (207)
T 1jsx_A 44 RDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207)
T ss_dssp ----CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred CCHHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEE
Confidence 5556777777777664321124789999999999999888877 567899999999999999999999888764 89
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+++|+.+... .++||+|+++..- ....++..+.++|+|||++++... ....
T Consensus 120 ~~~d~~~~~~---~~~~D~i~~~~~~-------------------------~~~~~l~~~~~~L~~gG~l~~~~~-~~~~ 170 (207)
T 1jsx_A 120 VQSRVEEFPS---EPPFDGVISRAFA-------------------------SLNDMVSWCHHLPGEQGRFYALKG-QMPE 170 (207)
T ss_dssp EECCTTTSCC---CSCEEEEECSCSS-------------------------SHHHHHHHHTTSEEEEEEEEEEES-SCCH
T ss_pred EecchhhCCc---cCCcCEEEEeccC-------------------------CHHHHHHHHHHhcCCCcEEEEEeC-CCch
Confidence 9999987642 3689999986310 157889999999999999999643 4456
Q ss_pred HHHHHHHHHcCCcEEE
Q 025180 180 SQICLQMMEKGYAARI 195 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~ 195 (256)
+++...+. ||....
T Consensus 171 ~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 171 DEIALLPE--EYQVES 184 (207)
T ss_dssp HHHHTSCT--TEEEEE
T ss_pred HHHHHHhc--CCceee
Confidence 66666554 777655
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-17 Score=132.02 Aligned_cols=149 Identities=10% Similarity=0.077 Sum_probs=110.2
Q ss_pred ccCCchHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 19 EPCDDSFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.++...+.+...+.+.+.... ..++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..+++
T Consensus 44 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 119 (240)
T 1xdz_A 44 SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRITFLEKLSEALQL 119 (240)
T ss_dssp SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 455556666666665543221 136789999999999999888875 5678999999999999999999999887
Q ss_pred cc-eEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 96 HA-DLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.. +++++|+.+.... ..+++||+|+++..- ....+++.+.++|+|||++++..
T Consensus 120 ~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 120 ENTTFCHDRAETFGQRKDVRESYDIVTARAVA-------------------------RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp SSEEEEESCHHHHTTCTTTTTCEEEEEEECCS-------------------------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEEeccHHHhcccccccCCccEEEEeccC-------------------------CHHHHHHHHHHhcCCCCEEEEEe
Confidence 54 9999999775321 124789999995410 15788999999999999999864
Q ss_pred eCCCCHH---HHHHHHHHcCCcEEEEE
Q 025180 174 LTANDPS---QICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~~~~~~~---~~~~~~~~~g~~~~~~~ 197 (256)
. ....+ ++.+.+...||......
T Consensus 175 g-~~~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 175 A-ASAEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp C-C-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred C-CCchHHHHHHHHHHHHcCCeEeEEE
Confidence 3 22233 45667778898775543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-17 Score=133.66 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=114.0
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceE
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~ 99 (256)
+........++..+..+ .++.+|||+|||+|.++..++.. .+. +|+|+|+++.+++.+++++..+++. .++
T Consensus 28 ~~~~~~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 100 (257)
T 3f4k_A 28 PGSPEATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADY----VKG-QITGIDLFPDFIEIFNENAVKANCADRVKG 100 (257)
T ss_dssp SCCHHHHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHH----CCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CCCHHHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHh----CCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence 33566667777776433 46789999999999999888887 443 9999999999999999999998876 489
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+++|+.+. ++.+++||+|+++..+++. + ...+++.+.++|||||++++..+.
T Consensus 101 ~~~d~~~~--~~~~~~fD~v~~~~~l~~~-~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 156 (257)
T 3f4k_A 101 ITGSMDNL--PFQNEELDLIWSEGAIYNI-G---------------------FERGMNEWSKYLKKGGFIAVSEASWFTS 156 (257)
T ss_dssp EECCTTSC--SSCTTCEEEEEEESCSCCC-C---------------------HHHHHHHHHTTEEEEEEEEEEEEEESSS
T ss_pred EECChhhC--CCCCCCEEEEEecChHhhc-C---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence 99999665 3345899999998776543 1 468899999999999999997743
Q ss_pred ----------------CCCHHHHHHHHHHcCCcEEEEEe
Q 025180 176 ----------------ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ----------------~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.....++.+.+.+.||.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 157 ERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195 (257)
T ss_dssp CCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 11345677888888988766543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=129.28 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+...++ +++.+..+.+.+.+.+... ..++.+|||+|||+|.+++.+++. ++ .++|+|+++.+++.|++++
T Consensus 14 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~----~~--~v~~vD~~~~~~~~a~~~~ 83 (171)
T 1ws6_A 14 LKVPAS---ARPSPVRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASE----GW--EAVLVEKDPEAVRLLKENV 83 (171)
T ss_dssp ECCCTT---CCCCCHHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHT----TC--EEEEECCCHHHHHHHHHHH
T ss_pred ecCCCC---CCCCHHHHHHHHHHHHHhh-ccCCCeEEEeCCCcCHHHHHHHHC----CC--eEEEEeCCHHHHHHHHHHH
Confidence 345556 4445566666666655320 026789999999999998888775 33 5999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhc--CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccC
Q 025180 91 EAHNVHADLINTDIASGLEKRL--AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~--~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lkpg 166 (256)
..+++..+++++|+.+...... .++||+|+++|||. .. ...+++.+. ++|+||
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~---------------------~~~~~~~~~~~~~L~~g 140 (171)
T 1ws6_A 84 RRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MD---------------------LAALFGELLASGLVEAG 140 (171)
T ss_dssp HHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SC---------------------TTHHHHHHHHHTCEEEE
T ss_pred HHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hh---------------------HHHHHHHHHhhcccCCC
Confidence 9888755999999988644321 24799999999986 11 123344444 999999
Q ss_pred eEEEEEEeCCCC
Q 025180 167 GWLYLVTLTAND 178 (256)
Q Consensus 167 G~l~~~~~~~~~ 178 (256)
|++++.++....
T Consensus 141 G~~~~~~~~~~~ 152 (171)
T 1ws6_A 141 GLYVLQHPKDLY 152 (171)
T ss_dssp EEEEEEEETTSC
T ss_pred cEEEEEeCCccC
Confidence 999997775543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=126.76 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=108.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.+++.+++.++ ++++++|+|+++.+++.|++++..+++. .+++++|+.+... ..+++||+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~ 96 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVG---ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-YIDCPVKA 96 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHC---TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-TCCSCEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-hccCCceE
Confidence 5788999999999999998888752 4569999999999999999999998873 3899999877642 34578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHHc---C
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMMEK---G 190 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~---g 190 (256)
|++++||.+..+.... ........+++.+.++|||||+++++..... ....+..++... +
T Consensus 97 v~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (197)
T 3eey_A 97 VMFNLGYLPSGDHSIS------------TRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKK 164 (197)
T ss_dssp EEEEESBCTTSCTTCB------------CCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTT
T ss_pred EEEcCCcccCcccccc------------cCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCc
Confidence 9999999553332110 0112345789999999999999998764221 123344444433 4
Q ss_pred CcEEEEEe--cCCCCccEEEEEEEec
Q 025180 191 YAARIVVQ--RSTEEENLHIIKFWRD 214 (256)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~l~~~~~~ 214 (256)
|....... ....++.+++++.++.
T Consensus 165 ~~v~~~~~~~~~~~pp~~~~~~~~~~ 190 (197)
T 3eey_A 165 FIVQRTDFINQANCPPILVCIEKISE 190 (197)
T ss_dssp EEEEEEEETTCCSCCCEEEEEEECCS
T ss_pred EEEEEEEeccCccCCCeEEEEEEccc
Confidence 55443332 2233445555554443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=130.43 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=122.0
Q ss_pred ccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 13 SHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.....|+-+.. ...|+..++.-+..+..+++.+|||+|||+|.++..++..+ +|+..|+|+|+++.|++.++++..
T Consensus 47 ~~~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~V---G~~G~V~avD~s~~~~~~l~~~a~ 123 (233)
T 4df3_A 47 YNGEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDII---GPRGRIYGVEFAPRVMRDLLTVVR 123 (233)
T ss_dssp ETTEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHH---CTTCEEEEEECCHHHHHHHHHHST
T ss_pred cCCceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHhhH
Confidence 34445666665 66788888877777777899999999999999999999987 467799999999999999988765
Q ss_pred HcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 92 AHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
..+ +...+.+|...... +...+++|+|+++.++.. ....++.++.+.|||||+++
T Consensus 124 ~~~-ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~-----------------------~~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 124 DRR-NIFPILGDARFPEKYRHLVEGVDGLYADVAQPE-----------------------QAAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp TCT-TEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT-----------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred hhc-CeeEEEEeccCccccccccceEEEEEEeccCCh-----------------------hHHHHHHHHHHhccCCCEEE
Confidence 432 23677778766532 334578999999877531 14678999999999999999
Q ss_pred EEEeCCC---------CHHHHHHHHHHcCCcEEEEEec-CCCCccEEE
Q 025180 171 LVTLTAN---------DPSQICLQMMEKGYAARIVVQR-STEEENLHI 208 (256)
Q Consensus 171 ~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l 208 (256)
++..... ......+.+++.||+......- .....++.+
T Consensus 180 I~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv 227 (233)
T 4df3_A 180 MAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMI 227 (233)
T ss_dssp EEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEE
T ss_pred EEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEE
Confidence 8653221 1234566778889987665432 233344443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=129.56 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=112.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.. .++.+++|+|+++.+++.+++++...++. ..++.+|+.+.. +.+++||+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 110 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMV---GEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--LPDNTVDFI 110 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHH---TTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--SCSSCEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC--CCCCCeeEE
Confidence 577899999999999988888874 25679999999999999999999888876 489999987753 345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------------CHHHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------DPSQICLQMM 187 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~ 187 (256)
+++..+.+..+ ...+++.+.++|+|||+++++..... ..+++.+.+.
T Consensus 111 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 169 (219)
T 3dh0_A 111 FMAFTFHELSE---------------------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILE 169 (219)
T ss_dssp EEESCGGGCSS---------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHH
T ss_pred EeehhhhhcCC---------------------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHH
Confidence 99876554322 46889999999999999999764322 3578999999
Q ss_pred HcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 188 EKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 188 ~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+.||+......... ..+.+.++|
T Consensus 170 ~~Gf~~~~~~~~~~---~~~~~~~~k 192 (219)
T 3dh0_A 170 DAGIRVGRVVEVGK---YCFGVYAMI 192 (219)
T ss_dssp HTTCEEEEEEEETT---TEEEEEEEC
T ss_pred HCCCEEEEEEeeCC---ceEEEEEEe
Confidence 99999776654432 334444444
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=134.46 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh-hcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK-RLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~-~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. .|++.|+|+|+++.+++.|++++..+++.+ .++++|+.+.++. +.+++||.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~----~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKD----RPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHH----CCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChhe
Confidence 46789999999999999988887 788899999999999999999999988865 9999999886543 45689999
Q ss_pred EEEC--CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 119 MVVN--PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~n--pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|+++ +||...... ..++ ....+++.+.++|||||++++.+......+++...+...
T Consensus 109 v~~~~~~p~~~~~~~-------~rr~--------~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~ 166 (218)
T 3dxy_A 109 VQLFFPDPWHKARHN-------KRRI--------VQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI 166 (218)
T ss_dssp EEEESCCCCCSGGGG-------GGSS--------CSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred EEEeCCCCccchhhh-------hhhh--------hhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 9998 455322110 1111 124689999999999999999876444455566666543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-16 Score=125.04 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=109.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++. ....++++|+.+. ++.+++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~~ 108 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTH----PSVTFHHGTITDL--SDSPKRWAGLLA 108 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGGG--GGSCCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC----CCCeEEeCccccc--ccCCCCeEEEEe
Confidence 3789999999999998777765 458999999999999998873 2348999998875 334689999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHH
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~ 186 (256)
+..+.+.+... ...+++.+.++|+|||++++...... ...++.+.+
T Consensus 109 ~~~l~~~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (203)
T 3h2b_A 109 WYSLIHMGPGE-------------------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQAL 169 (203)
T ss_dssp ESSSTTCCTTT-------------------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHH
T ss_pred hhhHhcCCHHH-------------------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHH
Confidence 87766554222 57899999999999999999775433 367899999
Q ss_pred HHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 187 MEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 187 ~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
.+.||+...+..... .++-++....+
T Consensus 170 ~~~Gf~~~~~~~~~~-~p~~~l~~~~~ 195 (203)
T 3h2b_A 170 ETAGFQVTSSHWDPR-FPHAYLTAEAS 195 (203)
T ss_dssp HHTTEEEEEEEECTT-SSEEEEEEEEC
T ss_pred HHCCCcEEEEEecCC-Ccchhhhhhhh
Confidence 999999888776655 55555554444
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-17 Score=127.20 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=111.2
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-c
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-A 97 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~ 97 (256)
|++....+.+.+++.+. ..++.+|||+|||+|.+++.++.. . .+++++|+++.+++.+++++..++. . .
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~----~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~ 84 (192)
T 1l3i_A 14 PGPTAMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGR----V--RRVYAIDRNPEAISTTEMNLQRHGLGDNV 84 (192)
T ss_dssp CCCCCHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTT----S--SEEEEEESCHHHHHHHHHHHHHTTCCTTE
T ss_pred CCCChHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHh----c--CEEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence 33445667777777654 257889999999999998777765 3 5999999999999999999998887 3 3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.+.++|+.+..+. .++||+|+++.++.. ...+++.+.++|+|||++++..+...
T Consensus 85 ~~~~~d~~~~~~~--~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~l~~gG~l~~~~~~~~ 138 (192)
T 1l3i_A 85 TLMEGDAPEALCK--IPDIDIAVVGGSGGE------------------------LQEILRIIKDKLKPGGRIIVTAILLE 138 (192)
T ss_dssp EEEESCHHHHHTT--SCCEEEEEESCCTTC------------------------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred EEEecCHHHhccc--CCCCCEEEECCchHH------------------------HHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 8899998774332 158999999877521 47889999999999999999877666
Q ss_pred CHHHHHHHHHHcCCcEEE
Q 025180 178 DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~ 195 (256)
....+.+.+.+.||....
T Consensus 139 ~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 139 TKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp HHHHHHHHHHHTTCCCEE
T ss_pred hHHHHHHHHHHCCCceEE
Confidence 667888889999986443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=143.00 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.++.. ++.|+|+|+|+.+++.|++|+..+++..++.++|+.+.+... .+.||+|+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~-~~~fD~Ii 285 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGL-EGPFHHVL 285 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTC-CCCEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHh-cCCCCEEE
Confidence 35899999999999999988875 346999999999999999999999988788899998876543 34499999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HH----HHHHHHHHcCCcEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PS----QICLQMMEKGYAARI 195 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~----~~~~~~~~~g~~~~~ 195 (256)
+|||++..+.... . .....+..++..+.++|+|||++++++++... .+ .+...+.+.|.....
T Consensus 286 ~dpP~f~~~~~~~-----~-------~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i 353 (393)
T 4dmg_A 286 LDPPTLVKRPEEL-----P-------AMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRV 353 (393)
T ss_dssp ECCCCCCSSGGGH-----H-------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEE
T ss_pred ECCCcCCCCHHHH-----H-------HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 9999976543210 0 11234678899999999999999977765542 22 334445555665554
Q ss_pred EEe
Q 025180 196 VVQ 198 (256)
Q Consensus 196 ~~~ 198 (256)
+..
T Consensus 354 ~~~ 356 (393)
T 4dmg_A 354 HRV 356 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=138.52 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
.+.+++.++... + .++.+|||+|||+|.++++++.. .+.+.|+|+|+++.+++.|++|+..+++. .++++
T Consensus 203 ~~~la~~l~~~~--~--~~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~ 274 (373)
T 3tm4_A 203 KASIANAMIELA--E--LDGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274 (373)
T ss_dssp CHHHHHHHHHHH--T--CCSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred cHHHHHHHHHhh--c--CCCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 566667666654 2 47889999999999999998886 44458999999999999999999999983 49999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+|+.+... ..++||+|++||||....... ..-...+..+++.+.++| +|.++++++ ....
T Consensus 275 ~D~~~~~~--~~~~fD~Ii~npPyg~r~~~~-------------~~~~~ly~~~~~~l~r~l--~g~~~~i~~---~~~~ 334 (373)
T 3tm4_A 275 GDATQLSQ--YVDSVDFAISNLPYGLKIGKK-------------SMIPDLYMKFFNELAKVL--EKRGVFITT---EKKA 334 (373)
T ss_dssp CCGGGGGG--TCSCEEEEEEECCCC-------------------CCHHHHHHHHHHHHHHHE--EEEEEEEES---CHHH
T ss_pred CChhhCCc--ccCCcCEEEECCCCCcccCcc-------------hhHHHHHHHHHHHHHHHc--CCeEEEEEC---CHHH
Confidence 99988642 347899999999997543211 011234578889999988 666666554 4567
Q ss_pred HHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+.+.+.+.||+.........+.-...++....
T Consensus 335 ~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~~~ 366 (373)
T 3tm4_A 335 IEEAIAENGFEIIHHRVIGHGGLMVHLYVVKL 366 (373)
T ss_dssp HHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEEEcCCEEEEEEeccC
Confidence 77888889998766655555554555555443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=131.59 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=105.4
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.+.+.+... .....+++.+.+.. .++.+|||+|||+|.++..++.. ++..+++|+|+++.+++.|++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~ 76 (219)
T 3jwg_A 4 NEETEKKLNLNQQRLGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKD----KSFEQITGVDVSYSVLERAKDRLKID 76 (219)
T ss_dssp --------CHHHHHHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTS----TTCCEEEEEESCHHHHHHHHHHHTGG
T ss_pred cccCCcCCcchHHHHHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 344444443 44555666665532 46789999999999988777664 56679999999999999999998776
Q ss_pred CCc------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 94 NVH------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 94 ~~~------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
++. .+++++|+... +...++||+|+++..+.+.+++ ....+++.+.++|||||
T Consensus 77 ~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 77 RLPEMQRKRISLFQSSLVYR--DKRFSGYDAATVIEVIEHLDEN-------------------RLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp GSCHHHHTTEEEEECCSSSC--CGGGTTCSEEEEESCGGGCCHH-------------------HHHHHHHHHHTTTCCSE
T ss_pred ccccccCcceEEEeCccccc--ccccCCCCEEEEHHHHHhCCHH-------------------HHHHHHHHHHHhhCCCE
Confidence 653 48899998544 2234789999997665544321 24688999999999999
Q ss_pred EEEEEEeCCC---------------------CHHHHH----HHHHHcCCcEEEEE
Q 025180 168 WLYLVTLTAN---------------------DPSQIC----LQMMEKGYAARIVV 197 (256)
Q Consensus 168 ~l~~~~~~~~---------------------~~~~~~----~~~~~~g~~~~~~~ 197 (256)
+++.+..... ...++. ..+.+.||.+...-
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 136 VIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp EEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 7666432211 234555 66778898765543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=129.57 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=110.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|..+|+|+|+++.+++.|++|+..+++.. ++..+|..+..++ ..+||+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--~~~~D~ 87 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVER----GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--TDQVSV 87 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--CcCCCE
Confidence 36789999999999999998886 667789999999999999999999999864 8999999876543 126998
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.. |. |......++..+.+.|+++|++++ .+. .....+++++.+.||.......
T Consensus 88 Ivia----------------------G~-Gg~~i~~Il~~~~~~L~~~~~lVl-q~~-~~~~~vr~~L~~~Gf~i~~e~l 142 (225)
T 3kr9_A 88 ITIA----------------------GM-GGRLIARILEEGLGKLANVERLIL-QPN-NREDDLRIWLQDHGFQIVAESI 142 (225)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGCTTCCEEEE-EES-SCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEc----------------------CC-ChHHHHHHHHHHHHHhCCCCEEEE-ECC-CCHHHHHHHHHHCCCEEEEEEE
Confidence 8752 11 234578999999999999999888 443 5688999999999998766544
Q ss_pred cCCCCccEEEEEEEe
Q 025180 199 RSTEEENLHIIKFWR 213 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~ 213 (256)
.......+.++...+
T Consensus 143 v~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 143 LEEAGKFYEILVVEA 157 (225)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred EEECCEEEEEEEEEe
Confidence 333333444555544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-17 Score=139.75 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=114.5
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc-CCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE-VPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~-~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+|+....++... ++.+. ...++.+|||+|||+|.+++.+++.+... ..+..++|+|+++.+++.|+.|+..+++
T Consensus 108 ~~TP~~i~~~~~~l-l~~l~--~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~ 184 (344)
T 2f8l_A 108 QMTPDSIGFIVAYL-LEKVI--QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ 184 (344)
T ss_dssp CCCCHHHHHHHHHH-HHHHH--TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHH-HHHhc--CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC
Confidence 67786444444333 33221 12367899999999999999988875421 1126899999999999999999998888
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc-CCCCcH-HHHHHHHHHHhhccccCeEEEEEE
Q 025180 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA-GGENGR-AVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...++++|..... ...+||+|++||||...+..+.. ..+. +...+. .....+++.+.+.|+|||+++++.
T Consensus 185 ~~~i~~~D~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~-----~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 185 KMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENA-----KTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHH-----TTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEECCCCCcc---ccCCccEEEECCCCCCcCchhhh-----hhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6699999987643 24689999999998654332211 0111 111111 123468999999999999999988
Q ss_pred eC----CCCHHHHHHHHHHcCCcE
Q 025180 174 LT----ANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 174 ~~----~~~~~~~~~~~~~~g~~~ 193 (256)
+. ......+++++.+.++..
T Consensus 257 p~~~~~~~~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 257 PDAMFGTSDFAKVDKFIKKNGHIE 280 (344)
T ss_dssp EGGGGGSTTHHHHHHHHHHHEEEE
T ss_pred CchhcCCchHHHHHHHHHhCCeEE
Confidence 52 345678888888877643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=134.45 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------------CCcceEEEcchhhc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------------NVHADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------------~~~~~~~~~d~~~~ 107 (256)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.... ....+++++|+.+.
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 46789999999999998888875 458999999999999999875431 22348999999876
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|++...+++.+. .....+++++.++|||||+++++.....
T Consensus 95 ~~~-~~~~fD~v~~~~~l~~l~~-------------------~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~ 154 (203)
T 1pjz_A 95 TAR-DIGHCAAFYDRAAMIALPA-------------------DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFS 154 (203)
T ss_dssp THH-HHHSEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCC
T ss_pred Ccc-cCCCEEEEEECcchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCC
Confidence 322 0168999999765543322 1246789999999999999555443321
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025180 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++...+.+ ||+...+.
T Consensus 155 ~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 155 VPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp CCHHHHHHTSCS-SEEEEEEE
T ss_pred CCHHHHHHHhcC-CcEEEEec
Confidence 24566666665 77655444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=129.51 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=111.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|+|||+|.+++.+++. ++...|+|+|+++.+++.|++|+..+++.. ++..+|..+...+ ..+||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~--~~~~D~ 93 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQM----GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE--ADNIDT 93 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHT----TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEECCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc--ccccCE
Confidence 46789999999999999998886 566789999999999999999999999864 8999999887543 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.. |. |-.....++....+.|+++|++++. + ......+++++.+.||.......
T Consensus 94 Ivia----------------------Gm-Gg~lI~~IL~~~~~~l~~~~~lIlq-p-~~~~~~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 94 ITIC----------------------GM-GGRLIADILNNDIDKLQHVKTLVLQ-P-NNREDDLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGGTTCCEEEEE-E-SSCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEe----------------------CC-chHHHHHHHHHHHHHhCcCCEEEEE-C-CCChHHHHHHHHHCCCEEEEEEE
Confidence 7641 11 2245788999999999999998883 4 34588999999999998766554
Q ss_pred cCCCCccEEEEEEEec
Q 025180 199 RSTEEENLHIIKFWRD 214 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~ 214 (256)
.......+.++...++
T Consensus 149 v~e~~~~Yeii~~~~~ 164 (230)
T 3lec_A 149 LTENDKRYEILVVKHG 164 (230)
T ss_dssp EEC--CEEEEEEEEEC
T ss_pred EEECCEEEEEEEEEeC
Confidence 4444444555555553
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=126.68 Aligned_cols=138 Identities=12% Similarity=0.080 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d 103 (256)
+.+...+++.+. ..++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..+++. .-++.+|
T Consensus 11 ~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d 83 (178)
T 3hm2_A 11 QHVRALAISALA---PKPHETLWDIGGGSGSIAIEWLRS----TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG 83 (178)
T ss_dssp HHHHHHHHHHHC---CCTTEEEEEESTTTTHHHHHHHTT----SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC
T ss_pred HHHHHHHHHHhc---ccCCCeEEEeCCCCCHHHHHHHHH----CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc
Confidence 344455555543 257789999999999998777765 56789999999999999999999988875 2267778
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+..+. ..++||+|+++.++.+ ..+++.+.++|+|||++++............
T Consensus 84 ~~~~~~~-~~~~~D~i~~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 137 (178)
T 3hm2_A 84 APRAFDD-VPDNPDVIFIGGGLTA-------------------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLW 137 (178)
T ss_dssp TTGGGGG-CCSCCSEEEECC-TTC-------------------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHH
T ss_pred hHhhhhc-cCCCCCEEEECCcccH-------------------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHH
Confidence 7664432 2378999999877542 3568999999999999999776665666788
Q ss_pred HHHHHcCCcEEE
Q 025180 184 LQMMEKGYAARI 195 (256)
Q Consensus 184 ~~~~~~g~~~~~ 195 (256)
..+.+.++....
T Consensus 138 ~~~~~~~~~~~~ 149 (178)
T 3hm2_A 138 ALRKQFGGTISS 149 (178)
T ss_dssp HHHHHHCCEEEE
T ss_pred HHHHHcCCeeEE
Confidence 888888876544
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=132.62 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=111.2
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ce
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--AD 98 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~ 98 (256)
++.....++.++..+. ..++.+|||+|||+|.++..++.. . +++++|+|+++.+++.|++++...++. .+
T Consensus 18 ~~~~~~~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~la~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~ 89 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARD----H-GITGTGIDMSSLFTAQAKRRAEELGVSERVH 89 (256)
T ss_dssp SSCCHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHH----T-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred CCCCHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHh----c-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceE
Confidence 3345666777777654 257889999999999999888876 3 458999999999999999999988875 48
Q ss_pred EEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--
Q 025180 99 LINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-- 176 (256)
Q Consensus 99 ~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-- 176 (256)
++++|+.+.. + +++||+|++...+++.++ ...+++++.++|||||++++..+..
T Consensus 90 ~~~~d~~~~~--~-~~~fD~V~~~~~~~~~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (256)
T 1nkv_A 90 FIHNDAAGYV--A-NEKCDVAACVGATWIAGG---------------------FAGAEELLAQSLKPGGIMLIGEPYWRQ 145 (256)
T ss_dssp EEESCCTTCC--C-SSCEEEEEEESCGGGTSS---------------------SHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred EEECChHhCC--c-CCCCCEEEECCChHhcCC---------------------HHHHHHHHHHHcCCCeEEEEecCcccC
Confidence 9999998753 2 578999999655443322 3688999999999999999976422
Q ss_pred -------------------CCHHHHHHHHHHcCCcEEEE
Q 025180 177 -------------------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -------------------~~~~~~~~~~~~~g~~~~~~ 196 (256)
....++.+.+.+.||..+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 146 LPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp CCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred CCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 12357788888889876543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=139.76 Aligned_cols=140 Identities=23% Similarity=0.349 Sum_probs=104.5
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 12 SSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++|.+.. .....+.+++.+. ..++.+|||+|||+|.+++.+++. +|+++|+++|+++.+++.+++++.
T Consensus 170 ~~~~gvf~~~~-~d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~~~~ 241 (343)
T 2pjd_A 170 KTLPGVFSRDG-LDVGSQLLLSTLT---PHTKGKVLDVGCGAGVLSVAFARH----SPKIRLTLCDVSAPAVEASRATLA 241 (343)
T ss_dssp EECTTCTTSSS-CCHHHHHHHHHSC---TTCCSBCCBTTCTTSHHHHHHHHH----CTTCBCEEEESBHHHHHHHHHHHH
T ss_pred EecCCccCCCC-CcHHHHHHHHhcC---cCCCCeEEEecCccCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHH
Confidence 34566555432 1222344444442 135679999999999999888877 677899999999999999999999
Q ss_pred HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 92 AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+++..+++.+|+.+.. +++||+|++||||+.... ........++..+.++|||||++++
T Consensus 242 ~~~~~~~~~~~d~~~~~----~~~fD~Iv~~~~~~~g~~----------------~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 242 ANGVEGEVFASNVFSEV----KGRFDMIISNPPFHDGMQ----------------TSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp HTTCCCEEEECSTTTTC----CSCEEEEEECCCCCSSSH----------------HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HhCCCCEEEEccccccc----cCCeeEEEECCCcccCcc----------------CCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 98887788899987642 468999999999863211 0122367899999999999999999
Q ss_pred EEeCCCCH
Q 025180 172 VTLTANDP 179 (256)
Q Consensus 172 ~~~~~~~~ 179 (256)
+.+.....
T Consensus 302 ~~~~~~~~ 309 (343)
T 2pjd_A 302 VANAFLPY 309 (343)
T ss_dssp EEETTSSH
T ss_pred EEcCCCCc
Confidence 87755443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=137.47 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=107.5
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceE
Q 025180 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADL 99 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~ 99 (256)
++....+++.+.+.. ..++.+|||+|||+|.+++.++.. ++.|+++|+|+.+++.|++|+..+++. .++
T Consensus 136 dq~~~~~~l~~~~~~--~~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~ 207 (332)
T 2igt_A 136 EQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRW 207 (332)
T ss_dssp GGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEE
T ss_pred HHHHHHHHHHHHHHh--cCCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEE
Confidence 456655666665431 136789999999999999888874 349999999999999999999999875 489
Q ss_pred EEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 100 INTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 100 ~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++|+.+..... ..++||+|++|||++........ ......+..++..+.++|+|||++++......
T Consensus 208 i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 208 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV-----------WQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE-----------EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred EECcHHHHHHHHHhcCCCceEEEECCccccCCchHHH-----------HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 999998875432 14689999999997643321100 01123467889999999999999777554322
Q ss_pred --CHHHHHHHHH----HcCCcE
Q 025180 178 --DPSQICLQMM----EKGYAA 193 (256)
Q Consensus 178 --~~~~~~~~~~----~~g~~~ 193 (256)
....+.+.+. +.|+..
T Consensus 277 ~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 277 RASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp TSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeE
Confidence 2334444444 456654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=137.71 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=117.6
Q ss_pred eccCC--ccccCCchHHHHHHHHHhhc------------ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEe
Q 025180 12 SSHPE--VYEPCDDSFALVDALLADRI------------NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD 77 (256)
Q Consensus 12 ~~~~~--~~~p~~~~~~l~~~l~~~~~------------~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD 77 (256)
...++ ++.++++++.+.+.+..... .+...++.+|||+|||+|.+++.++..+ +|+.+++++|
T Consensus 68 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~---~~~~~v~~vD 144 (277)
T 1o54_A 68 RTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYE 144 (277)
T ss_dssp ECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEEC
T ss_pred EEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh---CCCcEEEEEE
Confidence 34444 67888887777653322110 1112567899999999999998888764 3567999999
Q ss_pred CCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHH
Q 025180 78 INPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKI 155 (256)
Q Consensus 78 ~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
+++.+++.|++++..+++. .+++.+|+.+.. .+++||+|++++|. ...+
T Consensus 145 ~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~V~~~~~~--------------------------~~~~ 195 (277)
T 1o54_A 145 KREEFAKLAESNLTKWGLIERVTIKVRDISEGF---DEKDVDALFLDVPD--------------------------PWNY 195 (277)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---SCCSEEEEEECCSC--------------------------GGGT
T ss_pred CCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---cCCccCEEEECCcC--------------------------HHHH
Confidence 9999999999999988873 388999988763 23689999999874 2366
Q ss_pred HHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025180 156 LPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 156 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+..+.++|+|||++++..+......++.+.+.+.||........
T Consensus 196 l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 196 IDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECC
T ss_pred HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEE
Confidence 88899999999999998875555667788888889886665543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=130.03 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=93.0
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c
Q 025180 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~ 97 (256)
.+++.+..+.+.+++.+... .++.+|||+|||+|.+++.++.. +. ..|+|+|+++.+++.|++|+..+++. .
T Consensus 33 ~~rp~~~~~~~~l~~~l~~~--~~~~~vLDlgcG~G~~~~~l~~~----~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v 105 (202)
T 2fpo_A 33 GLRPTTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSR----YA-AGATLIEMDRAVSQQLIKNLATLKAGNA 105 (202)
T ss_dssp -----CHHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHHHhh--cCCCeEEEeCCCcCHHHHHHHhc----CC-CEEEEEECCHHHHHHHHHHHHHcCCCcE
Confidence 34444566666666655321 25789999999999998876654 22 38999999999999999999998874 4
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEeC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTLT 175 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 175 (256)
+++++|+.+..+. ..++||+|+++|||.. .. ...+++.+.+ +|+|||++++....
T Consensus 106 ~~~~~D~~~~~~~-~~~~fD~V~~~~p~~~-~~---------------------~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 106 RVVNSNAMSFLAQ-KGTPHNIVFVDPPFRR-GL---------------------LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEECSCHHHHHSS-CCCCEEEEEECCSSST-TT---------------------HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEECCHHHHHhh-cCCCCCEEEECCCCCC-Cc---------------------HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 9999999875432 3468999999999752 11 3455666644 69999999987764
Q ss_pred C
Q 025180 176 A 176 (256)
Q Consensus 176 ~ 176 (256)
.
T Consensus 163 ~ 163 (202)
T 2fpo_A 163 E 163 (202)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=122.53 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=109.1
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEE
Q 025180 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLIN 101 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~ 101 (256)
....+.+.+++.+. ..++.+|||+|||+|.++..++. ++.+++|+|+++.+++.+++++..+++.. ++++
T Consensus 19 ~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~ 89 (183)
T 2yxd_A 19 TKEEIRAVSIGKLN---LNKDDVVVDVGCGSGGMTVEIAK------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK 89 (183)
T ss_dssp CCHHHHHHHHHHHC---CCTTCEEEEESCCCSHHHHHHHT------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CHHHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 35677777777764 24678999999999998877665 35699999999999999999999988754 8999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
+|+.+..+ +++||+|+++++ .. ...++..+.++ |||++++..+......+
T Consensus 90 ~d~~~~~~---~~~~D~i~~~~~----~~---------------------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~ 139 (183)
T 2yxd_A 90 GRAEDVLD---KLEFNKAFIGGT----KN---------------------IEKIIEILDKK--KINHIVANTIVLENAAK 139 (183)
T ss_dssp SCHHHHGG---GCCCSEEEECSC----SC---------------------HHHHHHHHHHT--TCCEEEEEESCHHHHHH
T ss_pred CCcccccc---CCCCcEEEECCc----cc---------------------HHHHHHHHhhC--CCCEEEEEecccccHHH
Confidence 99987433 368999999877 11 56788888887 99999998876666678
Q ss_pred HHHHHHHcCCcEEEEE
Q 025180 182 ICLQMMEKGYAARIVV 197 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~ 197 (256)
+.+.+++.||....+.
T Consensus 140 ~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 140 IINEFESRGYNVDAVN 155 (183)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCeEEEEE
Confidence 8999999998766554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-17 Score=131.03 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=109.9
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+.+.++..+.. ..++.+|||+|||+|.++..++.. .|+.+++|+|+++.+++.|++++...+ ...++++|+.+
T Consensus 31 ~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~ 103 (234)
T 3dtn_A 31 FYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEK----YPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSK 103 (234)
T ss_dssp HHHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTT
T ss_pred HHHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhc
Confidence 33555555432 246799999999999998888887 678899999999999999999876555 45899999987
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------- 177 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------- 177 (256)
...+ ++||+|+++.++.+.++.+ ...+++++.++|||||++++......
T Consensus 104 ~~~~---~~fD~v~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 161 (234)
T 3dtn_A 104 YDFE---EKYDMVVSALSIHHLEDED-------------------KKELYKRSYSILKESGIFINADLVHGETAFIENLN 161 (234)
T ss_dssp CCCC---SCEEEEEEESCGGGSCHHH-------------------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHH
T ss_pred cCCC---CCceEEEEeCccccCCHHH-------------------HHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHH
Confidence 6332 7899999987766543321 34689999999999999999764321
Q ss_pred -------------------------------CHHHHHHHHHHcCCcEEEEEecCC
Q 025180 178 -------------------------------DPSQICLQMMEKGYAARIVVQRST 201 (256)
Q Consensus 178 -------------------------------~~~~~~~~~~~~g~~~~~~~~~~~ 201 (256)
..+++.+++++.||..+.+.-...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 216 (234)
T 3dtn_A 162 KTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYY 216 (234)
T ss_dssp HHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEET
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeec
Confidence 124566688999998776654433
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=132.68 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
.......++..+.. ..++.+|||+|||+|.++..++.. ++++|+|+|+++.+++.|++++...++. .++++
T Consensus 30 ~~~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 102 (267)
T 3kkz_A 30 SPEVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGH-----VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102 (267)
T ss_dssp CHHHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTT-----CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CHHHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 45556666666542 257899999999999988776664 5679999999999999999999988875 48999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----- 176 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----- 176 (256)
+|+.+.. +.+++||+|+++.++.+. + ...+++.+.++|||||++++..+..
T Consensus 103 ~d~~~~~--~~~~~fD~i~~~~~~~~~-~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 158 (267)
T 3kkz_A 103 GSMDDLP--FRNEELDLIWSEGAIYNI-G---------------------FERGLNEWRKYLKKGGYLAVSECSWFTDER 158 (267)
T ss_dssp CCTTSCC--CCTTCEEEEEESSCGGGT-C---------------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCC
T ss_pred cChhhCC--CCCCCEEEEEEcCCceec-C---------------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCC
Confidence 9997753 335789999998776543 1 4688999999999999999976531
Q ss_pred ---------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 ---------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ---------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+.+.||..+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 159 PAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp CHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1234667778888888765543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=134.55 Aligned_cols=133 Identities=22% Similarity=0.270 Sum_probs=96.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCc------
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVH------ 96 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~------ 96 (256)
.+++.+++.+. ..++.+|||+|||+|.+++.++..+. .++.+|+|+|+|+.+++.|++++..+ ++.
T Consensus 38 ~l~~~~l~~~~---~~~~~~vLD~gcGsG~~~~~la~~~~--~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHR--RSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTG--GGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cCCCCeEEECCCCCCHHHHHHHHHhc--cCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 45555555432 23678999999999999988887631 23568999999999999999988765 431
Q ss_pred ---------------------ce-------------EEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccch
Q 025180 97 ---------------------AD-------------LINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 97 ---------------------~~-------------~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
.+ ++++|+.+.... . ...+||+|++||||........
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~------ 186 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG------ 186 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS------
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc------
Confidence 23 899998875421 0 2348999999999975443210
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+......+++.+.++|+|||+++++...
T Consensus 187 ------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 187 ------QVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp ------CCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ------cccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 123456789999999999999999995443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-17 Score=130.12 Aligned_cols=124 Identities=11% Similarity=0.077 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH----- 96 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~----- 96 (256)
+......+.+.+.+.. .++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|++++..+++.
T Consensus 12 ~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 84 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKD----SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84 (217)
T ss_dssp CHHHHHHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHC----TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHT
T ss_pred CHHHHHHHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhh----CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCc
Confidence 3355556666666542 46789999999999998877775 56679999999999999999998877653
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+++++|+... +...++||+|+++..+.+.+.+ ....+++.+.++|||||+++++.
T Consensus 85 ~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 85 RLQLIQGALTYQ--DKRFHGYDAATVIEVIEHLDLS-------------------RLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TEEEEECCTTSC--CGGGCSCSEEEEESCGGGCCHH-------------------HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ceEEEeCCcccc--cccCCCcCEEeeHHHHHcCCHH-------------------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 48899998543 2234789999997665544321 25788999999999999777643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=143.40 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=104.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----C----CcceEEEcchhhchh--
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----N----VHADLINTDIASGLE-- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~----~~~~~~~~d~~~~~~-- 109 (256)
.++.+|||+|||+|.++..+++.+ .++++|+|+|+++.+++.|++++..+ | ...+++.+|+.+...
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLV---GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHH---TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 478999999999999998888874 25679999999999999999998765 4 234899999887521
Q ss_pred --hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025180 110 --KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 110 --~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
++.+++||+|+++..+.+.++ ...+++++.++|||||++++......
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 217 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTN---------------------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD 217 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC
T ss_pred cCCCCCCCEEEEEEccchhcCCC---------------------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh
Confidence 334579999999877654433 46889999999999999999754321
Q ss_pred ------------CHHHHHHHHHHcCCcEEEE
Q 025180 178 ------------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 ------------~~~~~~~~~~~~g~~~~~~ 196 (256)
...++.+.+.+.||....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 248 (383)
T 4fsd_A 218 PILYGECLGGALYLEDFRRLVAEAGFRDVRL 248 (383)
T ss_dssp HHHHHTTCTTCCBHHHHHHHHHHTTCCCEEE
T ss_pred HHHhhcccccCCCHHHHHHHHHHCCCceEEE
Confidence 2367889999999976543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=131.70 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=110.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++....|.|+..++. ..+.+.+ +++.+|||+|||+|.+++.+++. ..+.|+++|+||.+++.+++|+
T Consensus 101 ~D~~k~~f~~~~~~er--~ri~~~~-----~~g~~VlD~~aG~G~~~i~~a~~-----g~~~V~avD~np~a~~~~~~N~ 168 (278)
T 3k6r_A 101 LDVAKIMFSPANVKER--VRMAKVA-----KPDELVVDMFAGIGHLSLPIAVY-----GKAKVIAIEKDPYTFKFLVENI 168 (278)
T ss_dssp EETTTSCCCGGGHHHH--HHHHHHC-----CTTCEEEETTCTTTTTTHHHHHH-----TCCEEEEECCCHHHHHHHHHHH
T ss_pred EeccceEEcCCcHHHH--HHHHHhc-----CCCCEEEEecCcCcHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHH
Confidence 5566667777665444 3455543 57999999999999999998876 2358999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. .++++|..+... .+.||.|++|||+. ...++..+.++||+||+
T Consensus 169 ~~N~v~~~v~~~~~D~~~~~~---~~~~D~Vi~~~p~~-------------------------~~~~l~~a~~~lk~gG~ 220 (278)
T 3k6r_A 169 HLNKVEDRMSAYNMDNRDFPG---ENIADRILMGYVVR-------------------------THEFIPKALSIAKDGAI 220 (278)
T ss_dssp HHTTCTTTEEEECSCTTTCCC---CSCEEEEEECCCSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCcEEEEeCcHHHhcc---ccCCCEEEECCCCc-------------------------HHHHHHHHHHHcCCCCE
Confidence 9999875 889999988753 36899999999864 23456677789999999
Q ss_pred EEEEEeC------CCCHHHHHHHHHHcCCcEEEE
Q 025180 169 LYLVTLT------ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 169 l~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+.+.... ....+.+.+.+...|+....+
T Consensus 221 ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 221 IHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 8763321 122345677777888876443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=133.27 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=89.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. .+.++|+|+|+++.+++.|++|+..+++.+ .++++|+.+. +. .++||+|
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~----~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~~~~D~V 190 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKY----SKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--KDVADRV 190 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH----TCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--TTCEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--cCCceEE
Confidence 47789999999999999999887 456699999999999999999999999865 8999999887 32 5689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+++||+. ...++..+.+.|+|||++++.+...
T Consensus 191 i~d~p~~-------------------------~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 191 IMGYVHK-------------------------THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EECCCSS-------------------------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EECCccc-------------------------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9999961 3466888889999999999876543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=128.41 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. ++...|+|+|+++.+++.|++|+..+++.. ++..+|..+...+ ..+||+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~--~~~~D~ 93 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKN----QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK--KDAIDT 93 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--GGCCCE
T ss_pred CCCCEEEEECCccHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc--cccccE
Confidence 46789999999999999998886 566689999999999999999999999864 8999999887543 135999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++. |. |-.....++....+.|+++|++++. + ......+++++.+.||.......
T Consensus 94 Ivia----------------------gm-Gg~lI~~IL~~~~~~L~~~~~lIlq-~-~~~~~~lr~~L~~~Gf~i~~E~l 148 (244)
T 3gnl_A 94 IVIA----------------------GM-GGTLIRTILEEGAAKLAGVTKLILQ-P-NIAAWQLREWSEQNNWLITSEAI 148 (244)
T ss_dssp EEEE----------------------EE-CHHHHHHHHHHTGGGGTTCCEEEEE-E-SSCHHHHHHHHHHHTEEEEEEEE
T ss_pred EEEe----------------------CC-chHHHHHHHHHHHHHhCCCCEEEEE-c-CCChHHHHHHHHHCCCEEEEEEE
Confidence 8751 01 2356789999999999999999984 4 44688999999999998755444
Q ss_pred cCCCCccEEEEEEEec
Q 025180 199 RSTEEENLHIIKFWRD 214 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~ 214 (256)
.......+.++...++
T Consensus 149 v~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 149 LREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEETTEEEEEEEEEEC
T ss_pred EEECCEEEEEEEEEeC
Confidence 4344444555565554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=130.05 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+.+.+...+..+ .++.+|||+|||+|.++..++.. +++|+|+|+++.+++.++++ .+++.+|
T Consensus 25 ~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~-------~~~~~~d 89 (240)
T 3dli_A 25 RELVKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK-------FNVVKSD 89 (240)
T ss_dssp HHHHHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT-------SEEECSC
T ss_pred HHHHHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh-------cceeecc
Confidence 455556665555433 46799999999999998877765 45799999999999998876 4788899
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------ 177 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------ 177 (256)
+.+...++.+++||+|+++-.+.+.+.+. +..+++++.++|||||++++..+...
T Consensus 90 ~~~~~~~~~~~~fD~i~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 150 (240)
T 3dli_A 90 AIEYLKSLPDKYLDGVMISHFVEHLDPER-------------------LFELLSLCYSKMKYSSYIVIESPNPTSLYSLI 150 (240)
T ss_dssp HHHHHHTSCTTCBSEEEEESCGGGSCGGG-------------------HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHH
T ss_pred HHHHhhhcCCCCeeEEEECCchhhCCcHH-------------------HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHH
Confidence 88875555568999999976655443221 57899999999999999999876543
Q ss_pred ------------CHHHHHHHHHHcCCcEEEEE
Q 025180 178 ------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++...+.+.||....+.
T Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 151 NFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp HHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 23577888888898865443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-17 Score=133.22 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+ +|+.+++++|+++.+++.|++++..+++.. +++.+|+.+.. .+++||+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 165 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIV---GPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---EEENVDH 165 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---CCCSEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHh---CCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---CCCCcCE
Confidence 578999999999999998888765 356799999999999999999999988764 89999998653 3468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC--CcEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG--YAARIV 196 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g--~~~~~~ 196 (256)
|++++|. ...+++.+.++|+|||++++..+......++.+.+.+.| |....+
T Consensus 166 v~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 166 VILDLPQ--------------------------PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEECSSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred EEECCCC--------------------------HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence 9998873 245689999999999999998776666778888999998 876555
Q ss_pred Eec
Q 025180 197 VQR 199 (256)
Q Consensus 197 ~~~ 199 (256)
...
T Consensus 220 ~e~ 222 (255)
T 3mb5_A 220 INV 222 (255)
T ss_dssp ECC
T ss_pred EEE
Confidence 543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=126.06 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+...+......++.+|||+|||+|.+++.++.. +. ..++|+|+++.+++.+++++..+++..+++++|+
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~ 106 (207)
T 1wy7_A 32 GNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL----GA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV 106 (207)
T ss_dssp HHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG
T ss_pred hHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc----CC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECch
Confidence 334444443332222346889999999999998887765 22 3799999999999999999988887669999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. +.+||+|++||||+...... ...+++.+.+++ ||.+++........+.+.+
T Consensus 107 ~~~-----~~~~D~v~~~~p~~~~~~~~-------------------~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~ 160 (207)
T 1wy7_A 107 SEF-----NSRVDIVIMNPPFGSQRKHA-------------------DRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEK 160 (207)
T ss_dssp GGC-----CCCCSEEEECCCCSSSSTTT-------------------THHHHHHHHHHC--SEEEEEEECCHHHHHHHHH
T ss_pred HHc-----CCCCCEEEEcCCCccccCCc-------------------hHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHH
Confidence 874 24899999999997654311 245677777777 5544432223334556777
Q ss_pred HHHHcCCcEEEEE
Q 025180 185 QMMEKGYAARIVV 197 (256)
Q Consensus 185 ~~~~~g~~~~~~~ 197 (256)
.+.+.||....+.
T Consensus 161 ~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 161 FSWEHGFVVTHRL 173 (207)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHCCCeEEEEE
Confidence 8888898765543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-16 Score=124.27 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=100.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++. ...+..+|+.+.. .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~---~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD---AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC---CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC---CCCcEEEEE
Confidence 36789999999999998877764 458999999999999999886 3477888887764 468999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~ 186 (256)
++..+.+.+. .....+++.+.++|||||++++..+... ..+++.+.+
T Consensus 108 ~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (211)
T 3e23_A 108 AHACLLHVPR-------------------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARY 168 (211)
T ss_dssp ECSCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHH
T ss_pred ecCchhhcCH-------------------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHH
Confidence 9876654432 1267899999999999999999765432 567899999
Q ss_pred HHcC-CcEEEEE
Q 025180 187 MEKG-YAARIVV 197 (256)
Q Consensus 187 ~~~g-~~~~~~~ 197 (256)
++.| |+...+.
T Consensus 169 ~~aG~f~~~~~~ 180 (211)
T 3e23_A 169 AEAGTWASVAVE 180 (211)
T ss_dssp HHHCCCSEEEEE
T ss_pred HhCCCcEEEEEE
Confidence 9999 9976655
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=128.19 Aligned_cols=144 Identities=14% Similarity=0.171 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
...+++.+++.+. .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.|++++...++. .++++
T Consensus 29 ~~~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 99 (219)
T 3dlc_A 29 YPIIAENIINRFG----ITAGTCIDIGSGPGALSIALAKQ-----SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ 99 (219)
T ss_dssp HHHHHHHHHHHHC----CCEEEEEEETCTTSHHHHHHHHH-----SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cHHHHHHHHHhcC----CCCCEEEEECCCCCHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEE
Confidence 3445566666553 23349999999999998887775 4579999999999999999999988875 38999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---- 177 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---- 177 (256)
+|+.+.. +.+++||+|+++..+++..+ ...+++.+.++|+|||++++......
T Consensus 100 ~d~~~~~--~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 156 (219)
T 3dlc_A 100 GDVHNIP--IEDNYADLIVSRGSVFFWED---------------------VATAFREIYRILKSGGKTYIGGGFGNKELR 156 (219)
T ss_dssp CBTTBCS--SCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEECCSSHHHH
T ss_pred cCHHHCC--CCcccccEEEECchHhhccC---------------------HHHHHHHHHHhCCCCCEEEEEeccCcHHHH
Confidence 9997752 34578999999877654422 56889999999999999999642211
Q ss_pred -------------------------CHHHHHHHHHHcCCcEEEEEec
Q 025180 178 -------------------------DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 178 -------------------------~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..+++.+.+++.||+...+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 203 (219)
T 3dlc_A 157 DSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILG 203 (219)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEec
Confidence 1256788889999987766644
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-16 Score=131.91 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=103.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+..+++.+ .++++|+.+... ..++||+|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~---~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--~~~~fD~I 191 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--LNVEFDKI 191 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--GCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--ccccCCEE
Confidence 5789999999999999999888742 34699999999999999999999998855 899999887643 35689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHcCCc
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEKGYA 192 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~g~~ 192 (256)
++|+|+.....-. +.+...+.-. .........++..+.++|||||++++++++.. ....+...+++.+|+
T Consensus 192 l~d~Pcsg~g~~~---~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 192 LLDAPCTGSGTIH---KNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp EEECCTTSTTTCC-----------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EEeCCCCCccccc---CChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 9999975432110 0111111000 00112346889999999999999999887653 233456667777765
Q ss_pred E
Q 025180 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 269 ~ 269 (315)
T 1ixk_A 269 L 269 (315)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-16 Score=136.92 Aligned_cols=188 Identities=18% Similarity=0.128 Sum_probs=129.3
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|.....+..++..++.. .++.+|||+|||+|..++.++..+. ..+.|+|+|+++.+++.+++|+.++++
T Consensus 85 G~~~vQd~ss~l~~~~L~~------~~g~~VLDlcaGpGgkt~~lA~~~~---~~g~V~AvDis~~rl~~~~~n~~r~g~ 155 (456)
T 3m4x_A 85 GYEYSQEPSAMIVGTAAAA------KPGEKVLDLCAAPGGKSTQLAAQMK---GKGLLVTNEIFPKRAKILSENIERWGV 155 (456)
T ss_dssp TSCEECCTTTHHHHHHHCC------CTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CcEEEECHHHHHHHHHcCC------CCCCEEEEECCCcCHHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3444455544544444432 5789999999999999999998753 246999999999999999999999998
Q ss_pred cc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEE
Q 025180 96 HA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+ .++++|..+.... .+++||+|++|||+.... ...+.+...+.-..... .....++..+.++|||||+++
T Consensus 156 ~nv~v~~~Da~~l~~~-~~~~FD~Il~DaPCSg~G---~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv 231 (456)
T 3m4x_A 156 SNAIVTNHAPAELVPH-FSGFFDRIVVDAPCSGEG---MFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLI 231 (456)
T ss_dssp SSEEEECCCHHHHHHH-HTTCEEEEEEECCCCCGG---GTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CceEEEeCCHHHhhhh-ccccCCEEEECCCCCCcc---ccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 75 8888998776432 357899999999975322 12223333332222211 234588999999999999999
Q ss_pred EEEeCCC---CHHHHHHHHHHcCCcEE-------------------------EEEecCCCCccEEEEEEEecCc
Q 025180 171 LVTLTAN---DPSQICLQMMEKGYAAR-------------------------IVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 171 ~~~~~~~---~~~~~~~~~~~~g~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
+++++.. ....+...+.+++|+.. .+++.....+.+++-..+|...
T Consensus 232 YsTCs~~~eEne~vv~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~k~~~ 305 (456)
T 3m4x_A 232 YSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEGHFVAKLTFHGQ 305 (456)
T ss_dssp EEESCCCGGGTHHHHHHHHHHSSEEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTTSSSSCEEEEEEEECSC
T ss_pred EEEeecccccCHHHHHHHHHhCCCEEEeccccccccccccccccccccCCeEEECCCCCCCcCeEEEEEEECCC
Confidence 9888664 33456666666664432 2333344556777777777554
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=131.10 Aligned_cols=130 Identities=22% Similarity=0.221 Sum_probs=104.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +|+.+++|+|+++.+++.+++++..+++.. .++.+|+.+.. +.+++||+|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v 109 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKN----NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP--FEDSSFDHI 109 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC--SCTTCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC--CCCCCeeEE
Confidence 47899999999999998888877 678899999999999999999999888755 89999998753 345899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.++ ...++..+.++|||||++++..+..
T Consensus 110 ~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (276)
T 3mgg_A 110 FVCFVLEHLQS---------------------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQ 168 (276)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred EEechhhhcCC---------------------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHH
Confidence 99876654433 4588999999999999999976422
Q ss_pred -------CCHHHHHHHHHHcCCcEEEEE
Q 025180 177 -------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 -------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++..++++.||..+.+.
T Consensus 169 ~~~~~~~~~~~~l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 169 AYMKGNSLVGRQIYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHTTCCTTGGGGHHHHHHHTTCEEEEEE
T ss_pred HhcCCCcchHHHHHHHHHHCCCCeEEEe
Confidence 112456778888899876554
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=121.30 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+...++..+. +...++.+|||+|||+|.++..++..+ ++..|+|+|+|+.+++.+.+..... .+..++.+|+
T Consensus 41 ~~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~----~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~ 114 (210)
T 1nt2_A 41 SKLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIV----DEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDA 114 (210)
T ss_dssp CHHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHT----TTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCT
T ss_pred HHHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCC
Confidence 344455555443 333578899999999999988888873 3468999999999987776655433 2336777887
Q ss_pred hhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-----CCC
Q 025180 105 ASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-----AND 178 (256)
Q Consensus 105 ~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~ 178 (256)
.+... ....++||+|+++.+.. .....++.++.++|||||+++++... ...
T Consensus 115 ~~~~~~~~~~~~fD~V~~~~~~~-----------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 171 (210)
T 1nt2_A 115 SKPWKYSGIVEKVDLIYQDIAQK-----------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 171 (210)
T ss_dssp TCGGGTTTTCCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred CCchhhcccccceeEEEEeccCh-----------------------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCC
Confidence 66421 11237899999984210 01345689999999999999997532 112
Q ss_pred HHHHH----HHHHHcCCcEEEEEec
Q 025180 179 PSQIC----LQMMEKGYAARIVVQR 199 (256)
Q Consensus 179 ~~~~~----~~~~~~g~~~~~~~~~ 199 (256)
.+++. +.+.+. |+.......
T Consensus 172 ~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 172 PEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred HHHHHHHHHHHHHhh-cEEeeeecC
Confidence 33332 236666 876665443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=131.17 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=101.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.++..++.. . ...++|+|+++.+++.|++++...+. ...++.+|+.+.. ..+++||+|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLP----L-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTT----T-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHh----c-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC--CCCCCEEEEE
Confidence 5899999999999987655543 3 45899999999999999998876542 2388999987653 2346899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~~ 186 (256)
++..+.+.+++ ....++..+.++|+|||++++..+... ...++.+.+
T Consensus 152 ~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (241)
T 2ex4_A 152 IQWVIGHLTDQ-------------------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII 212 (241)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHH
T ss_pred EcchhhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHH
Confidence 97655433221 146889999999999999999664221 467899999
Q ss_pred HHcCCcEEEEEecC
Q 025180 187 MEKGYAARIVVQRS 200 (256)
Q Consensus 187 ~~~g~~~~~~~~~~ 200 (256)
.+.||.........
T Consensus 213 ~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 213 CSAGLSLLAEERQE 226 (241)
T ss_dssp HHTTCCEEEEEECC
T ss_pred HHcCCeEEEeeecC
Confidence 99999987766543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=130.38 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=101.0
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
..+.+.+.+... .++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|+++... ..+++++|+.+
T Consensus 29 ~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~ 97 (250)
T 2p7i_A 29 MHPFMVRAFTPF--FRPGNLLELGSFKGDFTSRLQEH----F--NDITCVEASEEAISHAQGRLKD---GITYIHSRFED 97 (250)
T ss_dssp HHHHHHHHHGGG--CCSSCEEEESCTTSHHHHHHTTT----C--SCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGG
T ss_pred HHHHHHHHHHhh--cCCCcEEEECCCCCHHHHHHHHh----C--CcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHH
Confidence 344555555432 36789999999999987666553 3 3799999999999999987543 45899999887
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh-hccccCeEEEEEEeCCC--------
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD-KLLSKRGWLYLVTLTAN-------- 177 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~-------- 177 (256)
.. .+++||+|++.-.+.+.++ ...+++++. ++|||||++++..+...
T Consensus 98 ~~---~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 153 (250)
T 2p7i_A 98 AQ---LPRRYDNIVLTHVLEHIDD---------------------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAV 153 (250)
T ss_dssp CC---CSSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHH
T ss_pred cC---cCCcccEEEEhhHHHhhcC---------------------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHH
Confidence 62 3578999999765543322 468899999 99999999999876432
Q ss_pred ------------------------CHHHHHHHHHHcCCcEEEEE
Q 025180 178 ------------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ------------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
...++.+.+++.||+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 154 KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 34577788888888876554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=130.19 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=98.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. . .+|+|+|+++.+++.|++++...++.. .++.+|+.+. ++.+++||+|
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~fD~V 107 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPF----V--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIV 107 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGG----S--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHh----C--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC--CCCCCCEEEE
Confidence 47899999999999987766654 3 389999999999999999998887654 8999998775 3445799999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.++ ...++.++.++|||||+++++....
T Consensus 108 ~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (260)
T 1vl5_A 108 TCRIAAHHFPN---------------------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHR 166 (260)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCC
T ss_pred EEhhhhHhcCC---------------------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccC
Confidence 99866544332 4688999999999999999965322
Q ss_pred -CCHHHHHHHHHHcCCcEEEEE
Q 025180 177 -NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+++.+.||....+.
T Consensus 167 ~~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 167 AWKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp CCBHHHHHHHHHHHTCEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEE
Confidence 123466777888888765443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=126.83 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=85.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. ++ +++|+|+++.+++.|+++...++...+++++|+.+.. ..+++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDY----GF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--FEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT----TC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--SCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHc----CC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC--CCCCcEEEEEE
Confidence 4789999999999998777765 33 8999999999999999999887755599999987752 33578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++++.... ......+++.+.++|+|||++++..+.
T Consensus 110 ~~~~~~~~-------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFE-------------------PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCC-------------------HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 98822111 112568899999999999999997653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-16 Score=129.59 Aligned_cols=129 Identities=21% Similarity=0.282 Sum_probs=102.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|.++..++.. +++|+|+|+++.+++.|++++...++. .+++++|+.+.. .+.+++||+|
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v 140 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-SHLETPVDLI 140 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG-GGCSSCEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh-hhcCCCceEE
Confidence 4789999999999998877765 569999999999999999999888874 389999998764 2346899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.++ ...+++.+.++|||||++++..+..
T Consensus 141 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (285)
T 4htf_A 141 LFHAVLEWVAD---------------------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKK 199 (285)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC
T ss_pred EECchhhcccC---------------------HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccc
Confidence 99876654432 4688999999999999999976421
Q ss_pred ----------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 ----------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ----------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
-...++.+++++.||+.+.+..
T Consensus 200 ~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 200 KKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG 231 (285)
T ss_dssp ----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence 1346788888889998765543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=133.59 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=108.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.++. ...++++|+|+|+++.+++.|++++...++. .+++++|+.+.. + +++||+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~ 190 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDY---SACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--T-REGYDL 190 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCC---TTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--C-CSCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHH---hcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--c-cCCeEE
Confidence 5789999999999998655531 2267889999999999999999999888876 389999998863 2 378999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|+++.++++.++.+ ....+++.+.++|||||++++.....
T Consensus 191 v~~~~~~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~ 252 (305)
T 3ocj_A 191 LTSNGLNIYEPDDA------------------RVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL 252 (305)
T ss_dssp EECCSSGGGCCCHH------------------HHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred EEECChhhhcCCHH------------------HHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence 99998877654431 24568999999999999999866221
Q ss_pred ----------------CCHHHHHHHHHHcCCcEEEEEecCC
Q 025180 177 ----------------NDPSQICLQMMEKGYAARIVVQRST 201 (256)
Q Consensus 177 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~ 201 (256)
...+++.+.+++.||..+.+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 293 (305)
T 3ocj_A 253 QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRA 293 (305)
T ss_dssp HHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTT
T ss_pred hhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccC
Confidence 2467889999999999877775433
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-16 Score=127.12 Aligned_cols=129 Identities=11% Similarity=0.146 Sum_probs=101.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..++.+|||+|||+|.++..++.. ++. +++|+|+++.+++.|+++.. .....++.+|+.+. ++.+++||+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~----~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~fD~v 112 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEH----GAK-KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDI--AIEPDAYNVV 112 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT----TCS-EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGC--CCCTTCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHc----CCC-EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhC--CCCCCCeEEE
Confidence 347899999999999998877775 333 89999999999999998764 22348999998765 3345899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+..+ ...+++.+.++|||||++++..+..
T Consensus 113 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (253)
T 3g5l_A 113 LSSLALHYIAS---------------------FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPV 171 (253)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEE
T ss_pred EEchhhhhhhh---------------------HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEe
Confidence 99766544322 5788999999999999999964321
Q ss_pred ----------------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 ----------------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ----------------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...+++.+.+.+.||+.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 172 DRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp CCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred ccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeec
Confidence 0567899999999999877663
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-16 Score=127.97 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..+++. . +++|+|+|+++.+++.+++++...++. ..++.+
T Consensus 47 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 118 (273)
T 3bus_A 47 DRLTDEMIALLD---VRSGDRVLDVGCGIGKPAVRLATA----R-DVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118 (273)
T ss_dssp HHHHHHHHHHSC---CCTTCEEEEESCTTSHHHHHHHHH----S-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHh----c-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence 344455555443 357899999999999998888775 3 569999999999999999999888875 489999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----- 177 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----- 177 (256)
|+.+. ++.+++||+|+++..+.+.++ ...++..+.++|||||++++......
T Consensus 119 d~~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 175 (273)
T 3bus_A 119 DAMDL--PFEDASFDAVWALESLHHMPD---------------------RGRALREMARVLRPGGTVAIADFVLLAPVEG 175 (273)
T ss_dssp CTTSC--CSCTTCEEEEEEESCTTTSSC---------------------HHHHHHHHHTTEEEEEEEEEEEEEESSCCCH
T ss_pred ccccC--CCCCCCccEEEEechhhhCCC---------------------HHHHHHHHHHHcCCCeEEEEEEeeccCCCCh
Confidence 98775 334578999999877765543 46889999999999999998764211
Q ss_pred -------------------CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 -------------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -------------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+++.||....+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 176 AKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp HHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 234566777778887655443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-16 Score=136.09 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=105.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c--ceEEEcchhhchhhhc--CCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H--ADLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~--~~~~~~d~~~~~~~~~--~~~f 116 (256)
++.+|||+|||+|.+++.++.. + ...|+|+|+++.+++.|++|+..+++ . .+++++|+.+...... ..+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~----g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG----G-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence 6789999999999999988875 2 34899999999999999999999998 5 4999999988765322 4689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-----HHHHHHHHHcCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-----SQICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~g~ 191 (256)
|+|++|||++..+.... .. ....+..++..+.++|+|||++++++++.... ..+.+.+.+.|+
T Consensus 295 D~Ii~dpP~~~~~~~~~---------~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQL---------MG---ACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp EEEEECCSSTTTCSSSS---------SC---CCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCCChhHH---------HH---HHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999976543211 11 11236788999999999999999987755432 223445666776
Q ss_pred cEEEEEe
Q 025180 192 AARIVVQ 198 (256)
Q Consensus 192 ~~~~~~~ 198 (256)
....+..
T Consensus 363 ~~~~i~~ 369 (396)
T 3c0k_A 363 DVQFIEQ 369 (396)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 6655543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=137.31 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc--CCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL--AGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~--~~~fD~ 118 (256)
++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++|+..+++.+ +++++|+.+...... ..+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence 5689999999999999998876 2489999999999999999999999875 999999988765321 468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcCCcE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKGYAA 193 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g~~~ 193 (256)
|++|||++..+..... .....+..++..+.++|+|||++++++++..... .+.+.+.+.|...
T Consensus 283 Ii~dpP~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 350 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVE------------RAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 350 (382)
T ss_dssp EEECCCCSCCSTTSHH------------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEECCCCCCCChhHHH------------HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 9999999765442210 0123467889999999999999999877554332 2334555666555
Q ss_pred EEEE
Q 025180 194 RIVV 197 (256)
Q Consensus 194 ~~~~ 197 (256)
..+.
T Consensus 351 ~~i~ 354 (382)
T 1wxx_A 351 RVVE 354 (382)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=129.40 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. + ++|+|+|+++.+++.|++++...++. .+++.+|+.+. +++||+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~----~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD~ 140 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEY----D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DEPVDR 140 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH----C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CCCCSE
T ss_pred CCcCEEEEeeccCcHHHHHHHHhC----C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CCCccE
Confidence 578899999999999998888763 3 68999999999999999999988876 38999998765 479999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|+++..+.+.++++.. .+......+++.+.++|||||++++.....
T Consensus 141 v~~~~~~~~~~d~~~~------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 141 IVSLGAFEHFADGAGD------------AGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp EEEESCGGGTTCCSSC------------CCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred EEEcchHHhcCccccc------------cchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 9998776655443100 011236789999999999999999977543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=132.64 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=101.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcc-eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.+ .++.+|+|+|+++.+++.|++++..+ +.+. +++.+|+.+.. .+++||+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~~~fD~ 182 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYAL---NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---SDQMYDA 182 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---CSCCEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHc---CCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---cCCCccE
Confidence 577899999999999998888764 35679999999999999999999888 7654 89999987743 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++|- ...+++.+.++|||||+++++.+.......+.+.+.+.||......
T Consensus 183 Vi~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 183 VIADIPD--------------------------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp EEECCSC--------------------------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEE
T ss_pred EEEcCcC--------------------------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 9998762 2467899999999999999988765555677777888888765544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-16 Score=125.53 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=96.9
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-hhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-EKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~fD~ 118 (256)
..++.+|||+|||+|.++..+++.+ .++.+|+|+|+++.+++.+.++...+ ....++.+|+.+.. .+...++||+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~---g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIV---GPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEE
Confidence 3578899999999999999888874 24569999999999988888887765 23488999988743 2334578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------CHHHHHHHHHH
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------DPSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~~~~~~~~~ 188 (256)
|++++|. ++ ....++..+.++|||||++++...... ...+ .+.+.+
T Consensus 151 V~~~~~~---~~--------------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~ 206 (233)
T 2ipx_A 151 IFADVAQ---PD--------------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQ 206 (233)
T ss_dssp EEECCCC---TT--------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGG
T ss_pred EEEcCCC---cc--------------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHH
Confidence 9998871 11 134568889999999999999654310 1112 466677
Q ss_pred cCCcEEEEEec
Q 025180 189 KGYAARIVVQR 199 (256)
Q Consensus 189 ~g~~~~~~~~~ 199 (256)
.||........
T Consensus 207 ~Gf~~~~~~~~ 217 (233)
T 2ipx_A 207 ENMKPQEQLTL 217 (233)
T ss_dssp GTEEEEEEEEC
T ss_pred CCCceEEEEec
Confidence 89987664443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=135.36 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=106.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..+..++.. .+++.|+|+|+++.+++.+++|+..+++...++++|+.+....+..++||+|+
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEV----APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHH----CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCcCeEEEECCCchHHHHHHHHH----cCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEE
Confidence 57899999999999999999887 44579999999999999999999999887789999988764333346899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-CCc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK-GYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~-g~~ 192 (256)
+|||+..... ..+.+...|....... .....++..+.++|||||++++++++.. ....+...+.++ +|.
T Consensus 321 ~D~Pcsg~g~---~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~ 397 (429)
T 1sqg_A 321 LDAPCSATGV---IRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 397 (429)
T ss_dssp EECCCCCGGG---TTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred EeCCCCcccc---cCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCE
Confidence 9999864322 1122222222111111 1346889999999999999999887654 233455666665 454
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=134.42 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=126.7
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|.....+..++..++. ..++.+|||+|||+|..++.++..+. ..+.|+|+|+++.+++.+++|+.++++
T Consensus 81 G~~~vQd~ss~l~a~~L~------~~~g~~VLDlgaGpG~kt~~LA~~~~---~~g~V~AvDis~~~l~~a~~n~~r~G~ 151 (464)
T 3m6w_A 81 GLYYIQEPSAQAVGVLLD------PKPGERVLDLAAAPGGKTTHLAARMG---GKGLLLANEVDGKRVRGLLENVERWGA 151 (464)
T ss_dssp TSEEECCTTTHHHHHHHC------CCTTCEEEESSCTTCHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHCC
T ss_pred CeEEEECHHHHHHHHhcC------cCCCCEEEEEcCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 334444444444444333 25789999999999999999998753 236899999999999999999999988
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEEEE
Q 025180 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
...++++|+.+... ...++||+|++|||+..... ..+.+...+.-..... .....++..+.++|||||++++
T Consensus 152 ~v~~~~~Da~~l~~-~~~~~FD~Il~D~PcSg~G~---~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy 227 (464)
T 3m6w_A 152 PLAVTQAPPRALAE-AFGTYFHRVLLDAPCSGEGM---FRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY 227 (464)
T ss_dssp CCEEECSCHHHHHH-HHCSCEEEEEEECCCCCGGG---TTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eEEEEECCHHHhhh-hccccCCEEEECCCcCCccc---cccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 77888999877642 23578999999999853221 1112222221111111 2347889999999999999999
Q ss_pred EEeCCC---CHHHHHHHHHHc-CCcE--------------------------EEEEecCCCCccEEEEEEEecCc
Q 025180 172 VTLTAN---DPSQICLQMMEK-GYAA--------------------------RIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 172 ~~~~~~---~~~~~~~~~~~~-g~~~--------------------------~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
++++.. ....+...+.++ +|+. ..+++.....+.+++-.++|...
T Consensus 228 sTCs~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~~~ 302 (464)
T 3m6w_A 228 STCTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGG 302 (464)
T ss_dssp EESCCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTTTSSSSCEEEEEEEECSC
T ss_pred EeccCchhcCHHHHHHHHHHCCCcEEEecccccccccCcccccccccccCCeEEECCCCCCceeEEEEEEEECCC
Confidence 888654 233455555555 3432 23334445567778888877654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=130.22 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhh--cCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKR--LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD 117 (256)
.++.+|||+|||+|..+..++..+. ....|+|+|+++.+++.+++|+..+++.. +++++|+.+..... ..++||
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMK---NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence 5789999999999999998888742 12699999999999999999999998854 89999988764321 246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
+|+++||+.....-.....+..... .........++..+.++|||||++++++++.. ....+...+.+.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~ 230 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDI---KYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR 230 (274)
T ss_dssp EEEEEECCC------------HHHH---TGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHH---HHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence 9999999864322110000000000 00011257889999999999999999887653 233445555443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-16 Score=125.09 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=104.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +++++|+|+++.+++.+++++. ...+++.+|+.+... . ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~--~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEV--P-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCC--C-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCC--C-CCeEEEE
Confidence 47899999999999998777764 4699999999999999998764 234889999887632 2 7899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------- 177 (256)
++..+.+.++.. ...++..+.++|||||++++..+...
T Consensus 112 ~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (220)
T 3hnr_A 112 STYAFHHLTDDE-------------------KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND 172 (220)
T ss_dssp EESCGGGSCHHH-------------------HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ECcchhcCChHH-------------------HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhh
Confidence 987665443321 24589999999999999999864322
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecCc
Q 025180 178 -------DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
..+++.+.+++.||+....... ...+++...+.+.
T Consensus 173 ~~~~~~~~~~~~~~~l~~aGf~v~~~~~~----~~~w~~~~~~~~~ 214 (220)
T 3hnr_A 173 LQTEYYTRIPVMQTIFENNGFHVTFTRLN----HFVWVMEATKQLE 214 (220)
T ss_dssp HHHSCCCBHHHHHHHHHHTTEEEEEEECS----SSEEEEEEEECSC
T ss_pred cchhhcCCHHHHHHHHHHCCCEEEEeecc----ceEEEEeehhhhh
Confidence 2357788888999976554433 3445566655443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=137.95 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=112.3
Q ss_pred eeccCCccccCC--chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPEVYEPCD--DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~~~~p~~--~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+.|.+.. .++.+++++++.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 256 ~~~~~~~f~q~n~~~~e~l~~~~~~~l~---~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~ 326 (433)
T 1uwv_A 256 LTFSPRDFIQVNAGVNQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQ 326 (433)
T ss_dssp EECCSSSCCCSBHHHHHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHH
T ss_pred EEECcccccccCHHHHHHHHHHHHHhhc---CCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHH
Confidence 567787776633 48888888887764 246789999999999999887764 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.. +++++|+.+.+.. +.+++||+|++||||... ..+++.+. .++|
T Consensus 327 n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~------------------------~~~~~~l~-~~~p 381 (433)
T 1uwv_A 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA------------------------AGVMQQII-KLEP 381 (433)
T ss_dssp HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC------------------------HHHHHHHH-HHCC
T ss_pred HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH------------------------HHHHHHHH-hcCC
Confidence 999998865 9999999885432 345689999999998521 23444444 3789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++++.......+ ...+.+.||....+.
T Consensus 382 ~~ivyvsc~p~tlard-~~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 382 IRIVYVSCNPATLARD-SEALLKAGYTIARLA 412 (433)
T ss_dssp SEEEEEESCHHHHHHH-HHHHHHTTCEEEEEE
T ss_pred CeEEEEECChHHHHhh-HHHHHHCCcEEEEEE
Confidence 9988885433332233 455666788876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=125.50 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+.+.+.+.+... ..++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++....+....++++|
T Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d 92 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecc
Confidence 345556666555422 136789999999999987666554 4589999999999999999998877766899999
Q ss_pred hhhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+... +++||+|+++. .+.+.... .....+++.+.++|+|||++++..
T Consensus 93 ~~~~~~---~~~fD~v~~~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 93 ISNLNI---NRKFDLITCCLDSTNYIIDS------------------DDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGCCC---SCCEEEEEECTTGGGGCCSH------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccCCc---cCCceEEEEcCccccccCCH------------------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 877532 27899999986 55443221 236788999999999999999843
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=131.31 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
..+.+.+.+.+..+ .++.+|||+|||+|.++..++.. .| +++|+|+|+++.+++.|++++...+.+.+++++|
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d 80 (284)
T 3gu3_A 7 DDYVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPL----LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 80 (284)
T ss_dssp HHHHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTT----SCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESC
T ss_pred hHHHHHHHHHHhcc--CCCCeEEEecCCCCHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 34455565555332 47899999999999987766655 55 4799999999999999999988777666999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.+... +++||+|+++..+.+.++ ...+++++.++|||||++++..+.
T Consensus 81 ~~~~~~---~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 81 ATEIEL---NDKYDIAICHAFLLHMTT---------------------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TTTCCC---SSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCc---CCCeeEEEECChhhcCCC---------------------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 987532 468999999766544332 468899999999999999987765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=130.81 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
...++.+++.+. ..++.+|||+|||+|.++..++... +++|+|+|+++.+++.++++.... ...+++.+|+
T Consensus 41 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~ 111 (266)
T 3ujc_A 41 LEATKKILSDIE---LNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDI 111 (266)
T ss_dssp HHHHHHHTTTCC---CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCT
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECcc
Confidence 334455555442 3578899999999999998888863 469999999999999999876544 2348999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--------
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------- 176 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------- 176 (256)
.+. ++.+++||+|+++..+.+.+. .....+++.+.++|||||++++..+..
T Consensus 112 ~~~--~~~~~~fD~v~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (266)
T 3ujc_A 112 LTK--EFPENNFDLIYSRDAILALSL-------------------ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170 (266)
T ss_dssp TTC--CCCTTCEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH
T ss_pred ccC--CCCCCcEEEEeHHHHHHhcCh-------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH
Confidence 875 334689999999766554321 236789999999999999999976422
Q ss_pred -------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 -------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 -------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+.+.||.......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 171 EFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 2356788888888988765543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=123.83 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.++..+..+...++.+|||+|||+|.++..++.. .+...|+|+|+++.+++.++++...+ .+..++.+|+
T Consensus 57 ~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~----~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~ 131 (230)
T 1fbn_A 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI----ADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDA 131 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH----TTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCT
T ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHH----cCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCC
Confidence 344455633333333357889999999999999888887 34569999999999999999987655 2348888998
Q ss_pred hhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--C---
Q 025180 105 ASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--N--- 177 (256)
Q Consensus 105 ~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~--- 177 (256)
.+... +. .++||+|+.+++.. .....++..+.+.|||||+++++.... .
T Consensus 132 ~~~~~~~~~-~~~~D~v~~~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 187 (230)
T 1fbn_A 132 NKPQEYANI-VEKVDVIYEDVAQP-----------------------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187 (230)
T ss_dssp TCGGGGTTT-SCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred CCccccccc-CccEEEEEEecCCh-----------------------hHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCC
Confidence 76321 22 26899999764320 014677999999999999999963211 1
Q ss_pred -----CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 178 -----DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 178 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...++. .+.+.||...............+++.+.+
T Consensus 188 ~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 188 DPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp CHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred CHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 114455 77888998766554333222334444444
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-16 Score=136.10 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=93.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--c-eEEEcchhhchhhhc--CCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--A-DLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~-~~~~~d~~~~~~~~~--~~~f 116 (256)
++.+|||+|||+|.+++.++.. + ...|+|+|+++.+++.|++|+..+++. . +++++|+.+.+.... ..+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~----g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG----G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT----T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCc
Confidence 5789999999999999988874 1 238999999999999999999999985 3 899999988654321 3589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
|+|++|||++..+... .......+..++..+.++|+|||++++.++....
T Consensus 287 D~Ii~DPP~~~~~~~~------------~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 287 DIIIIDPPSFARNKKE------------VFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 336 (385)
T ss_dssp EEEEECCCCC-----C------------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred cEEEECCCCCCCChhh------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 9999999997432110 1122344677889999999999999998765553
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-15 Score=120.18 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...++..++..+..+..+++.+|||+|||+|..+..++..++ +++.|+|+|+++.+++.+.+..... .+..++.+|
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~---~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~D 133 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE---LNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLAD 133 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT---TTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECC
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcc
Confidence 556777787777655567899999999999999999988764 4679999999999976555444332 234888899
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----
Q 025180 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----- 177 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----- 177 (256)
+..... ....++||+|+++.+.. + ....++..+.+.|||||+++++.....
T Consensus 134 a~~~~~~~~~~~~~D~I~~d~a~~---~--------------------~~~il~~~~~~~LkpGG~lvisik~~~~d~t~ 190 (232)
T 3id6_C 134 ARFPQSYKSVVENVDVLYVDIAQP---D--------------------QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK 190 (232)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCCT---T--------------------HHHHHHHHHHHHEEEEEEEEEEEC-------C
T ss_pred cccchhhhccccceEEEEecCCCh---h--------------------HHHHHHHHHHHhCCCCeEEEEEEccCCcccCC
Confidence 876432 12246899999987641 1 023344566669999999998642211
Q ss_pred ----CHHHHHHHHHHcCCcEEEEEec-CCCCccEEEE
Q 025180 178 ----DPSQICLQMMEKGYAARIVVQR-STEEENLHII 209 (256)
Q Consensus 178 ----~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~ 209 (256)
........+++.||+....... .....+..++
T Consensus 191 ~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~ 227 (232)
T 3id6_C 191 DPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVL 227 (232)
T ss_dssp CSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEE
Confidence 2345667888889887664433 3333454444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=143.06 Aligned_cols=186 Identities=15% Similarity=0.169 Sum_probs=120.1
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC---------CCceEEEEeCCHHHHHHH
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV---------PGVQYIATDINPYAVEVT 86 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~---------~~~~v~giD~~~~~i~~a 86 (256)
.+|+|+... +.+.+.+. +.++.+|||+|||+|.+++.+++.+.+.. ++..++|+|+++.+++.|
T Consensus 152 ~fyTP~~v~----~~mv~~l~---~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 152 QYFTPRPLI----QAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp GGCCCHHHH----HHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred cccCcHHHH----HHHHHHhC---CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 368885444 44444332 24678999999999999999888764321 235799999999999999
Q ss_pred HHHHHHcCCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 87 RKTLEAHNVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 87 ~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+.|+..+++. ..+.++|...... ..+||+|++||||................+ .... ....+++.+.++|
T Consensus 225 ~~nl~l~g~~~~~~~i~~gD~l~~~~---~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~-~~~~---~~~~fl~~~~~~L 297 (445)
T 2okc_A 225 SMNLYLHGIGTDRSPIVCEDSLEKEP---STLVDVILANPPFGTRPAGSVDINRPDFYV-ETKN---NQLNFLQHMMLML 297 (445)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSCC---SSCEEEEEECCCSSCCCTTCCCCCCTTSSS-CCSC---HHHHHHHHHHHHE
T ss_pred HHHHHHhCCCcCCCCEeeCCCCCCcc---cCCcCEEEECCCCCCcccccchhhHhhcCC-CCcc---hHHHHHHHHHHHh
Confidence 9999998884 4899999876532 248999999999987655322100001111 1111 1357889999999
Q ss_pred ccCeEEEEEEeCC-----CCHHHHHHHHH-HcCCcEEEEEecC---CCCccEEEEEEEecC
Q 025180 164 SKRGWLYLVTLTA-----NDPSQICLQMM-EKGYAARIVVQRS---TEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~-----~~~~~~~~~~~-~~g~~~~~~~~~~---~~~~~~~l~~~~~~~ 215 (256)
||||+++++.+.. .....+++.+. +..+..+...+.. .......++.+.+..
T Consensus 298 k~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~~ii~lp~~~F~~t~v~t~Il~~~k~~ 358 (445)
T 2okc_A 298 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQ 358 (445)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESS
T ss_pred ccCCEEEEEECCcccccCcHHHHHHHHHHhcCcEEEEEeCCCCCccCCCCCEEEEEEECCC
Confidence 9999999988642 12345666554 4444433333321 112344555555543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-16 Score=125.70 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=94.8
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--- 96 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--- 96 (256)
+.+.+..+...+..... .+++.+|||+|||+|..++.++..+ .++++|+++|+++++++.|++++...++.
T Consensus 37 i~~~~~~~l~~l~~~~~---~~~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~ 110 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTN---GNGSTGAIAITPAAGLVGLYILNGL---ADNTTLTCIDPESEHQRQAKALFREAGYSPSR 110 (221)
T ss_dssp CCHHHHHHHHHHHHHSC---CTTCCEEEEESTTHHHHHHHHHHHS---CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHhhC---CCCCCCEEEEcCCchHHHHHHHHhC---CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCc
Confidence 34445555555554421 1234599999999999999998874 24679999999999999999999998876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+++.+|+.+.++...+++||+|+++.+.. .+..+++.+.++|+|||++++
T Consensus 111 i~~~~gda~~~l~~~~~~~fD~V~~d~~~~------------------------~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 111 VRFLLSRPLDVMSRLANDSYQLVFGQVSPM------------------------DLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp EEEECSCHHHHGGGSCTTCEEEEEECCCTT------------------------THHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCHHHHHHHhcCCCcCeEEEcCcHH------------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 389999998876554468999999975421 156789999999999999998
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-16 Score=127.17 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=94.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH------------------cCCcceEEEc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA------------------HNVHADLINT 102 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~------------------~~~~~~~~~~ 102 (256)
.++.+|||+|||+|..+..++.. +++|+|+|+|+.|++.|+++... .+...+++++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 140 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC 140 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence 36789999999999998887775 56999999999999999776431 1233489999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------ 176 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------ 176 (256)
|+.+.... ..++||+|+++..+...+... ...+++.+.++|||||++++++...
T Consensus 141 D~~~l~~~-~~~~FD~V~~~~~l~~l~~~~-------------------~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~ 200 (252)
T 2gb4_A 141 SIFDLPRA-NIGKFDRIWDRGALVAINPGD-------------------HDRYADIILSLLRKEFQYLVAVLSYDPTKHA 200 (252)
T ss_dssp CTTTGGGG-CCCCEEEEEESSSTTTSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEEECCTTSCC
T ss_pred ccccCCcc-cCCCEEEEEEhhhhhhCCHHH-------------------HHHHHHHHHHHcCCCeEEEEEEEecCCccCC
Confidence 99886432 127899999987766554322 4678999999999999997654221
Q ss_pred -----CCHHHHHHHHHHcCCcEEEE
Q 025180 177 -----NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~ 196 (256)
-..+++.+.+.. +|+....
T Consensus 201 g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 201 GPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp CSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 234677777765 4655443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=127.05 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=103.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..++.+|||+|||+|.++..++... ...++|+|+++.+++.+++++... ...+++++|+.+. ++.+++||+|
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~--~~~~~~fD~v 162 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETA--TLPPNTYDLI 162 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGC--CCCSSCEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHC--CCCCCCeEEE
Confidence 3578999999999999988877763 347999999999999999987544 2348899998775 2345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICL 184 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~ 184 (256)
++...+.+.+. .....++..+.++|||||++++..+.. ...+++.+
T Consensus 163 ~~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 163 VIQWTAIYLTD-------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223 (254)
T ss_dssp EEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred EEcchhhhCCH-------------------HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHH
Confidence 99766543322 125788999999999999999977421 13478899
Q ss_pred HHHHcCCcEEEEEecC
Q 025180 185 QMMEKGYAARIVVQRS 200 (256)
Q Consensus 185 ~~~~~g~~~~~~~~~~ 200 (256)
.+.+.||....+....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999987765543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=128.88 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEE
Q 025180 25 FALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~ 101 (256)
...++.++..+... ...++.+|||+|||+|.++..+++.. +++++|+|+++.+++.|+++....++. .+++.
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 138 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34445555554100 12578899999999999998888763 358999999999999999999888764 38999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---- 177 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---- 177 (256)
+|+.+. ++.+++||+|+++..+.+.++ ...+++++.++|||||++++..+...
T Consensus 139 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 195 (297)
T 2o57_A 139 GSFLEI--PCEDNSYDFIWSQDAFLHSPD---------------------KLKVFQECARVLKPRGVMAITDPMKEDGID 195 (297)
T ss_dssp CCTTSC--SSCTTCEEEEEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCC
T ss_pred cCcccC--CCCCCCEeEEEecchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCc
Confidence 998775 334578999999766544332 46889999999999999999764221
Q ss_pred -----------------CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 -----------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -----------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+.+.||....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 196 KSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp GGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 344566778888887665543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=138.89 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=117.5
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+| ..+++.+.+.+.. .++.+|||+|||+|.+++.+++... ++..++|+|+++.+++.|
T Consensus 19 g~~~TP----~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~---~~~~i~gvDi~~~~~~~a-------- 80 (421)
T 2ih2_A 19 GRVETP----PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHG---TAYRFVGVEIDPKALDLP-------- 80 (421)
T ss_dssp --CCCC----HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHC---SCSEEEEEESCTTTCCCC--------
T ss_pred ceEeCC----HHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhC---CCCeEEEEECCHHHHHhC--------
Confidence 457888 5566666665532 3567999999999999988887642 456999999999999877
Q ss_pred CcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCccc----ccccchh------hhcCCCCcHHHHHHHHHHHhhccc
Q 025180 95 VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV----GREGIAS------AWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 95 ~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
...+++++|+.+... .++||+|++||||........ ...+... ....+. .+....+++.+.++|+
T Consensus 81 ~~~~~~~~D~~~~~~---~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fl~~~~~~Lk 155 (421)
T 2ih2_A 81 PWAEGILADFLLWEP---GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGK--YNLYGAFLEKAVRLLK 155 (421)
T ss_dssp TTEEEEESCGGGCCC---SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTT--CCHHHHHHHHHHHHEE
T ss_pred CCCcEEeCChhhcCc---cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCC--ccHHHHHHHHHHHHhC
Confidence 134899999887632 368999999999987554210 0000000 111111 2346688999999999
Q ss_pred cCeEEEEEEeCC----CCHHHHHHHHHHcCCcEEEEEecC--CCCccEEEEEEEecC
Q 025180 165 KRGWLYLVTLTA----NDPSQICLQMMEKGYAARIVVQRS--TEEENLHIIKFWRDF 215 (256)
Q Consensus 165 pgG~l~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~~ 215 (256)
|||+++++.+.. .....+++.+.+.++......... .......++.+.|..
T Consensus 156 ~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l~~~F~~~~~~~~il~~~k~~ 212 (421)
T 2ih2_A 156 PGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 212 (421)
T ss_dssp EEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred CCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEECCCCCCCCCccEEEEEEEeCC
Confidence 999999988753 235678888888776322222221 223445666666644
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=134.69 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=106.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..+..++..+. ..+.|+|+|+++.+++.+++|+..+++.+ .++++|+.+....+.+++||+|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMK---NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEE
Confidence 5788999999999999999988742 12699999999999999999999998854 8899998776432333689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHH----HHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHHHc-CC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRA----VIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMMEK-GY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~-g~ 191 (256)
++|||+..... ..+.+...|........ ....++..+.++|||||++++++++... ...+...+.++ +|
T Consensus 335 l~D~Pcsg~g~---~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~ 411 (450)
T 2yxl_A 335 LLDAPCTSSGT---IGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEF 411 (450)
T ss_dssp EEECCCCCGGG---TTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSC
T ss_pred EEcCCCCCCee---eccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCC
Confidence 99999854321 11222222222111111 2367899999999999999998886652 23456666665 56
Q ss_pred cE
Q 025180 192 AA 193 (256)
Q Consensus 192 ~~ 193 (256)
..
T Consensus 412 ~~ 413 (450)
T 2yxl_A 412 KL 413 (450)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=130.17 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=101.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.|++++..+++. .+++.+|+.+. ++.+++||+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 188 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT--PFDKGAVTA 188 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CCCTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC--CCCCCCEeE
Confidence 578999999999999998888763 468999999999999999999998876 48999999875 334579999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|+++..+.+.. ...+++.+.++|||||++++++....
T Consensus 189 V~~~~~l~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 3vc1_A 189 SWNNESTMYVD----------------------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI 246 (312)
T ss_dssp EEEESCGGGSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC
T ss_pred EEECCchhhCC----------------------HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC
Confidence 99975543221 57889999999999999999774222
Q ss_pred -CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 -DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+.+++.||....+..
T Consensus 247 ~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 247 HSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp CBHHHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEEe
Confidence 234567777777877655443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=126.06 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=103.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC------cceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~ 114 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++...++ ...+..+|+.+. ++.++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 100 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL--SFHDS 100 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC--CSCTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc--CCCCC
Confidence 46889999999999998887765 45999999999999999999887766 237888998765 23457
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-------------------
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT------------------- 175 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 175 (256)
+||+|+++..+.+.++. .....+++.+.++|+|||+++++...
T Consensus 101 ~~D~v~~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (235)
T 3sm3_A 101 SFDFAVMQAFLTSVPDP------------------KERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPIT 162 (235)
T ss_dssp CEEEEEEESCGGGCCCH------------------HHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHH
T ss_pred ceeEEEEcchhhcCCCH------------------HHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccch
Confidence 89999998776654432 12458899999999999999997542
Q ss_pred ---------------------CCCHHHHHHHHHHcCCcEEEEE
Q 025180 176 ---------------------ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ---------------------~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....+++.+.+++.||+.+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 163 KEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp CSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred hhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 2246788899999999876544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=126.44 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=106.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
....|+++++.+++.++.... .++.+|||+|||+|.++..++.. +++|+|+|+++.+++.++++ ..
T Consensus 26 ~~~~~~~~~~~l~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~----~~ 91 (226)
T 3m33_A 26 ARVLSGPDPELTFDLWLSRLL----TPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARAN----AP 91 (226)
T ss_dssp CCEESSSCTTHHHHHHHHHHC----CTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH----CT
T ss_pred ccccCCCCHHHHHHHHHHhcC----CCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHh----CC
Confidence 345677777788887776542 47899999999999987766654 46999999999999999987 22
Q ss_pred cceEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 96 HADLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+++++|+.+..+ +. +++||+|++++. ...++..+.++|||||+++. ..
T Consensus 92 ~~~~~~~d~~~~~~-~~~~~~fD~v~~~~~---------------------------~~~~l~~~~~~LkpgG~l~~-~~ 142 (226)
T 3m33_A 92 HADVYEWNGKGELP-AGLGAPFGLIVSRRG---------------------------PTSVILRLPELAAPDAHFLY-VG 142 (226)
T ss_dssp TSEEEECCSCSSCC-TTCCCCEEEEEEESC---------------------------CSGGGGGHHHHEEEEEEEEE-EE
T ss_pred CceEEEcchhhccC-CcCCCCEEEEEeCCC---------------------------HHHHHHHHHHHcCCCcEEEE-eC
Confidence 34899999865433 33 579999999731 24668899999999999994 33
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEE
Q 025180 175 TANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.......+...+.+.||....+.
T Consensus 143 ~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 143 PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred CcCCHHHHHHHHHHCCCeEEEEE
Confidence 44456788999999999865544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=129.91 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=88.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||||||+|..+..+++. .+ .++++||+++.+++.|+++....+....++.+|+.+....+.+++||.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~----~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEA----PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTS----CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHh----CC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence 57899999999999976555443 44 48999999999999999998877777789999998877777778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.++....... ........+++++.++|||||++++..
T Consensus 134 ~D~~~~~~~~----------------~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 134 YDTYPLSEET----------------WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ECCCCCBGGG----------------TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Eeeeecccch----------------hhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 8764321111 012236788999999999999998843
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=127.56 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|.++..++. ++..|+|+|+++.+++.|++++...+. ..+++.+|+.+... +++||+|
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v 136 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP---TELFDLI 136 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC---SSCEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC---CCCeeEE
Confidence 456999999999998765543 467899999999999999999876443 23899999988642 4689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------CCHHHHHHHHHHc
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------NDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~~~~~ 189 (256)
+++..+.+.+... ...+++.+.++|+|||+++++.... ...+++...+.+.
T Consensus 137 ~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (235)
T 3lcc_A 137 FDYVFFCAIEPEM-------------------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPI 197 (235)
T ss_dssp EEESSTTTSCGGG-------------------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGG
T ss_pred EEChhhhcCCHHH-------------------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHc
Confidence 9987776554322 5788999999999999999866432 2357889999999
Q ss_pred CCcEEEEEec
Q 025180 190 GYAARIVVQR 199 (256)
Q Consensus 190 g~~~~~~~~~ 199 (256)
||....+...
T Consensus 198 Gf~~~~~~~~ 207 (235)
T 3lcc_A 198 GFKAVSVEEN 207 (235)
T ss_dssp TEEEEEEEEC
T ss_pred CCeEEEEEec
Confidence 9988766543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=122.69 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=97.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++ .+.. .+++++|+.+. ..+++||+|
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~---~~~~~~D~v 111 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW---TPDRQWDAV 111 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC---CCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC---CCCCceeEE
Confidence 46689999999999998888776 4599999999999999987 4433 48999999876 235799999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
+++..+.+.+++ ....+++.+.++|+|||+++++....
T Consensus 112 ~~~~~l~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3ou2_A 112 FFAHWLAHVPDD-------------------RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQD 172 (218)
T ss_dssp EEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTT
T ss_pred EEechhhcCCHH-------------------HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCC
Confidence 997655443321 15788999999999999999976522
Q ss_pred ----------CCHHHHHHHHHHcCCcEEEEE
Q 025180 177 ----------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ----------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+.+++.||++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 173 GRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 145678888888898854433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=124.03 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=86.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. + ..++|+|+++.+++.+++++..++... .++.+|+.+. ++.+++||+|
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v 91 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPY----V--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--PFPDDSFDII 91 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG----S--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--CSCTTCEEEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC--CCCCCcEEEE
Confidence 57899999999999988776654 3 389999999999999999998888664 8999998764 3445789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+++.++ ...++.++.++|||||+++++..
T Consensus 92 ~~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 92 TCRYAAHHFSD---------------------VRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCchhhccC---------------------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 99765543322 46889999999999999999764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=123.81 Aligned_cols=136 Identities=16% Similarity=0.217 Sum_probs=104.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+.+.+...+ .++.+|||+|||+|.++..++.. +++++|+|+++.+++.++++. .....+++.+|+.
T Consensus 42 ~~~~~l~~~~-----~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~ 108 (242)
T 3l8d_A 42 TIIPFFEQYV-----KKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLS 108 (242)
T ss_dssp THHHHHHHHS-----CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTT
T ss_pred HHHHHHHHHc-----CCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchh
Confidence 4455555544 36789999999999998877765 458999999999999998864 2223489999988
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------- 176 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------- 176 (256)
+.. +.+++||+|+++..+.+.++ ...++..+.++|+|||++++.....
T Consensus 109 ~~~--~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 165 (242)
T 3l8d_A 109 SLP--FENEQFEAIMAINSLEWTEE---------------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSY 165 (242)
T ss_dssp BCS--SCTTCEEEEEEESCTTSSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG
T ss_pred cCC--CCCCCccEEEEcChHhhccC---------------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh
Confidence 753 34689999999877765433 4688999999999999999977432
Q ss_pred ------------CCHHHHHHHHHHcCCcEEEEE
Q 025180 177 ------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++.+.+.+.||+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 166 PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp GGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 134578899999999876544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=123.25 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=94.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----GL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~~ 115 (256)
++.+|||+|||+|..++.+++.+ .++++|+++|+++.+++.|++++..+++. .+++.+|+.+.++.... ++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLL---QPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTS---CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhC---CCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 67899999999999998888753 23679999999999999999999999886 38999999876554322 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
||+|+++.+... ......++..+ ++|+|||++++.........++.+.+.+..
T Consensus 135 fD~V~~d~~~~~---------------------~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~ 187 (221)
T 3u81_A 135 LDMVFLDHWKDR---------------------YLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSS 187 (221)
T ss_dssp CSEEEECSCGGG---------------------HHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCT
T ss_pred eEEEEEcCCccc---------------------chHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCC
Confidence 999999754211 11133566677 999999999985554444556677776654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=132.02 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=100.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+| |+|.+++.++.. +++.+|+|+|+++.+++.|++|+..+++. .+++.+|+.+.++...+++||+|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~----~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS----GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH----TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEE
Confidence 3678999999 999999888776 56579999999999999999999998874 58999999884432224689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE-EEEEeC-CCCH---HHHHHHHH-HcCCcE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL-YLVTLT-ANDP---SQICLQMM-EKGYAA 193 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~~~-~~~~---~~~~~~~~-~~g~~~ 193 (256)
++||||... ....++..+.++|+|||++ ++.... .... .++.+.+. +.|+..
T Consensus 246 i~~~p~~~~----------------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 246 ITDPPETLE----------------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp EECCCSSHH----------------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred EECCCCchH----------------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 999998521 1368899999999999954 554443 1344 56667776 778766
Q ss_pred EEEE
Q 025180 194 RIVV 197 (256)
Q Consensus 194 ~~~~ 197 (256)
..+.
T Consensus 304 ~~~~ 307 (373)
T 2qm3_A 304 TDII 307 (373)
T ss_dssp EEEE
T ss_pred hhhh
Confidence 5444
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-16 Score=127.19 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=101.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcc-eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++..+ +|+.+++++|+++.+++.|++++..+ +... +++.+|+.+. ++.+++||+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~ 169 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAV---GEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDG 169 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCE
Confidence 578899999999999998888765 35679999999999999999999887 7443 8999998876 223468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++|- ...++..+.++|+|||+++++.+......++.+.+.+.||......
T Consensus 170 v~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 170 VALDLME--------------------------PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp EEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEE
T ss_pred EEECCcC--------------------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEE
Confidence 9998762 2367899999999999999988765455677777878888765444
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=119.82 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=97.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++..++++ .+++.+|+.+.. . +++||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~D~v 101 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT--F-DRQYDFI 101 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC--C-CCCEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC--C-CCCceEE
Confidence 36789999999999998877764 459999999999999999999888874 489999988753 2 5789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------------CCHHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------------NDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~~~ 186 (256)
+++.++.+.+... ...++..+.++|+|||+++++.... -..+++.+.+
T Consensus 102 ~~~~~l~~~~~~~-------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (199)
T 2xvm_A 102 LSTVVLMFLEAKT-------------------IPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY 162 (199)
T ss_dssp EEESCGGGSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHT
T ss_pred EEcchhhhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHh
Confidence 9987765543221 5788999999999999988865321 1345777777
Q ss_pred HHcCCcEEEE
Q 025180 187 MEKGYAARIV 196 (256)
Q Consensus 187 ~~~g~~~~~~ 196 (256)
.. |+....
T Consensus 163 ~~--f~~~~~ 170 (199)
T 2xvm_A 163 EG--WERVKY 170 (199)
T ss_dssp TT--SEEEEE
T ss_pred cC--CeEEEe
Confidence 65 665444
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=139.49 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=120.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+|+....++++.+..... +.++.+|+|+|||||.+++.+++.+.. .....++|+|+++.++..|+.|+..++
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~---~~~~~~VlDPaCGSG~fLi~a~~~l~~-~~~~~i~G~Eid~~~~~lA~~Nl~l~g 272 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGRE---DKQGFTLYDATMGSGSLLLNAKRYSRQ-PQTVVYFGQELNTSTYNLARMNMILHG 272 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCT---TCTTCEEEETTCTTSTTGGGHHHHCSC-TTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred CeecccHHHHHHHHHHHhcccC---CCCCCEEeecccchhHHHHHHHHHHHh-ccCceEEEEECcHHHHHHHHHHHHHcC
Confidence 4589998777777776654321 146789999999999999988887653 235689999999999999999999999
Q ss_pred Cc--c-eEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccc-cccchhhhcC----CCCcHHHHHHHHHHHhhccc-
Q 025180 95 VH--A-DLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVG-REGIASAWAG----GENGRAVIDKILPSADKLLS- 164 (256)
Q Consensus 95 ~~--~-~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~l~~~~~~Lk- 164 (256)
+. . .+.++|..... +.....+||+|++||||......... .........+ .... -..++..+.+.|+
T Consensus 273 i~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~---~~~Fl~~~l~~Lk~ 349 (542)
T 3lkd_A 273 VPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKA---DFAFLLHGYYHLKQ 349 (542)
T ss_dssp CCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCC---HHHHHHHHHHTBCT
T ss_pred CCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchh---hHHHHHHHHHHhCC
Confidence 84 2 78999987652 12235789999999999854322111 1111111011 1111 2258899999999
Q ss_pred cCeEEEEEEeCCC----C-HHHHHHHHHHcCCc
Q 025180 165 KRGWLYLVTLTAN----D-PSQICLQMMEKGYA 192 (256)
Q Consensus 165 pgG~l~~~~~~~~----~-~~~~~~~~~~~g~~ 192 (256)
+||++.++.+... . ...+++.+.+.+.-
T Consensus 350 ~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l 382 (542)
T 3lkd_A 350 DNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAI 382 (542)
T ss_dssp TTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCE
T ss_pred CceeEEEEecchHhhCCchhHHHHHHHHhCCce
Confidence 9999999887542 1 35688888777653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=132.40 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=94.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++. +. ....|+|+|+|+.+++.|++|+..+++. .+++++|+.+.. ++||+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~------~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~ 261 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK------NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNR 261 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT------TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcE
Confidence 3689999999999999876 54 2468999999999999999999999984 399999998874 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc-CCcE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK-GYAA 193 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-g~~~ 193 (256)
|++|||++ ...++..+.++|+|||++++.+.... .....+.+.+. ++..
T Consensus 262 Vi~dpP~~-------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~~~~~i 311 (336)
T 2yx1_A 262 VIMNLPKF-------------------------AHKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKKCDCEV 311 (336)
T ss_dssp EEECCTTT-------------------------GGGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHHSEEEE
T ss_pred EEECCcHh-------------------------HHHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHhcCCcE
Confidence 99999975 23668888899999999999776655 55666677666 5553
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=135.24 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=95.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhh--cCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~--~~~~f 116 (256)
+++.+|||+|||+|.+++.++.. +...|+|+|+++.+++.|++|+..+++. .+++++|+.+..... ...+|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-----g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-----GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence 36899999999999999888874 2348999999999999999999999985 399999998875432 24689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
|+|++|||++..+..... .....+..++..+.++|+|||++++++++...
T Consensus 291 D~Vi~dpP~~~~~~~~~~------------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 340 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLK------------AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 340 (396)
T ss_dssp EEEEECCCCSCSSGGGHH------------HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred CEEEECCCCCCCCHHHHH------------HHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 999999999765432110 01234678899999999999999998776543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=128.11 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=108.5
Q ss_pred HHHHHHHhhccc---ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------
Q 025180 27 LVDALLADRINL---VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------- 95 (256)
Q Consensus 27 l~~~l~~~~~~~---~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------- 95 (256)
+.++++..+..+ ...++.+|||+|||+|.+++.++.. +. ..|+|+|+|+.|++.|++++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~----~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~ 111 (263)
T 2a14_A 37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD----SF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 111 (263)
T ss_dssp HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGG----TE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHh----hh-cceeeccccHHHHHHHHHHHhcCCCcccchHHH
Confidence 456665555433 2357789999999999764333222 11 2699999999999999988754320
Q ss_pred ----------------------cc-eEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHH
Q 025180 96 ----------------------HA-DLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA 150 (256)
Q Consensus 96 ----------------------~~-~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
.. +++.+|+.+..+ +...++||+|+++..+++... ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~-----------------~~~ 174 (263)
T 2a14_A 112 KFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-----------------SLD 174 (263)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHH
T ss_pred HHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC-----------------CHH
Confidence 01 278888877422 112468999999754322100 012
Q ss_pred HHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEEecC-------CCCccEEE
Q 025180 151 VIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQMMEKGYAARIVVQRS-------TEEENLHI 208 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~l 208 (256)
.+..++.++.++|||||++++..... -..+++.+.+.+.||......... ...+.+++
T Consensus 175 ~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~ 254 (263)
T 2a14_A 175 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCC 254 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEE
Confidence 35688999999999999999975321 146688999999999876554321 11235566
Q ss_pred EEEEec
Q 025180 209 IKFWRD 214 (256)
Q Consensus 209 ~~~~~~ 214 (256)
+.++|.
T Consensus 255 ~~a~K~ 260 (263)
T 2a14_A 255 IVARKK 260 (263)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 666663
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=128.48 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEE
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLI 100 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~ 100 (256)
...+..+++.+. .++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++...+. ..+++
T Consensus 69 ~~~~~~~~~~~~----~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~ 138 (299)
T 3g2m_A 69 TSEAREFATRTG----PVSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLV 138 (299)
T ss_dssp HHHHHHHHHHHC----CCCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEE
T ss_pred cHHHHHHHHhhC----CCCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEE
Confidence 344455555543 34569999999999988777654 46899999999999999999887763 35899
Q ss_pred EcchhhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 101 NTDIASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++|+.+... +++||+|++.. .+...+ ......+++.+.++|||||++++..+.
T Consensus 139 ~~d~~~~~~---~~~fD~v~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 139 QGDMSAFAL---DKRFGTVVISSGSINELD-------------------EADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp ECBTTBCCC---SCCEEEEEECHHHHTTSC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eCchhcCCc---CCCcCEEEECCcccccCC-------------------HHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 999988532 57899999742 121111 123578899999999999999996643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-15 Score=124.80 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.+++++...++. .+++.+|+.+. +++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 132 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----DEPVDR 132 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----CCCCSE
T ss_pred CCcCEEEEECCcccHHHHHHHHHc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----CCCeeE
Confidence 578899999999999998888652 349999999999999999999877764 38889998654 278999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
|++...+.+.+... ...+++.+.++|||||++++..+.
T Consensus 133 v~~~~~l~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 133 IVSIGAFEHFGHER-------------------YDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp EEEESCGGGTCTTT-------------------HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEeCchhhcChHH-------------------HHHHHHHHHHhcCCCCEEEEEEec
Confidence 99976655443211 578899999999999999997653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=127.74 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=89.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++..+++..+++.+|+.+... +++||+|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~i~ 189 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI---QENYDFIV 189 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC---CSCEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc---cCCccEEE
Confidence 36899999999999998887775 4589999999999999999999988866999999987633 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++.++++.+... ...++..+.++|+|||+++++..
T Consensus 190 ~~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 190 STVVFMFLNRER-------------------VPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp ECSSGGGSCGGG-------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EccchhhCCHHH-------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 998876554332 57899999999999999887654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=144.36 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=113.1
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----------CceEEEEeCCHHHH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----------GVQYIATDINPYAV 83 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-----------~~~v~giD~~~~~i 83 (256)
..+|+|+....++++.+.. .+ .+|||+|||||.+++.++..+.+..+ ...++|+|+++.++
T Consensus 225 G~fyTP~~Vv~lmv~ll~p-------~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~ 296 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEP-------YK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTW 296 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCC-------CS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHH
T ss_pred CeEeCCHHHHHHHHHHHhc-------CC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHH
Confidence 4589997666666665421 22 49999999999999988776532111 35899999999999
Q ss_pred HHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccEEEECCCCCCCCCc-ccccccchhhhcC--------C-CCcHHH
Q 025180 84 EVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGREGIASAWAG--------G-ENGRAV 151 (256)
Q Consensus 84 ~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-~~~~~~~~~~~~~--------~-~~~~~~ 151 (256)
+.|+.|+..+++...+ .++|..... .....+||+|++||||...... +......... .+ . ..+. .
T Consensus 297 ~lA~~Nl~l~gi~~~i~i~~gDtL~~~-~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~-~g~~~~~~~~~~~~~~-~ 373 (544)
T 3khk_A 297 KLAAMNMVIRGIDFNFGKKNADSFLDD-QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWT-INTNGEKRILTPPTGN-A 373 (544)
T ss_dssp HHHHHHHHHTTCCCBCCSSSCCTTTSC-SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGE-ECCC--CEECCCCTTC-T
T ss_pred HHHHHHHHHhCCCcccceeccchhcCc-ccccccccEEEECCCcCCccccchhhhhhhhhh-cCcccccccccCCCcc-h
Confidence 9999999999886544 788866542 2234689999999999864321 1111111111 11 1 1111 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCc
Q 025180 152 IDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYA 192 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~ 192 (256)
...+++.+.+.|+|||++.++.+... ....+++.+.+.+.-
T Consensus 374 ~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l 420 (544)
T 3khk_A 374 NFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLV 420 (544)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcH
Confidence 22588999999999999999887421 345788888877653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-16 Score=135.23 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=97.1
Q ss_pred eeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.| +++++.+. ++.+++++++.+. ..+.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 184 ~~~~~~~F~Q~n~~~~~~l~~~~~~~~~----~~~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~ 253 (369)
T 3bt7_A 184 YRQVENSFTQPNAAMNIQMLEWALDVTK----GSKGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQY 253 (369)
T ss_dssp EEEETTSCCCSBHHHHHHHHHHHHHHTT----TCCSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHH
T ss_pred EEECCCCeecCCHHHHHHHHHHHHHHhh----cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHH
Confidence 44555 46666665 6778888887764 23678999999999999877763 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcC--------------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHH
Q 025180 89 TLEAHNVHA-DLINTDIASGLEKRLA--------------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVID 153 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~--------------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
|+..+++++ +++.+|+.+....... .+||+|++|||+..
T Consensus 254 n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-------------------------- 307 (369)
T 3bt7_A 254 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-------------------------- 307 (369)
T ss_dssp HHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------------------------
T ss_pred HHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc--------------------------
Confidence 999999865 8999999887543322 37999999999741
Q ss_pred HHHHHHhhccccCeEEEEEEeCC
Q 025180 154 KILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 154 ~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+...+.+.|+++|++++++++.
T Consensus 308 -~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 308 -LDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp -CCHHHHHHHTTSSEEEEEESCH
T ss_pred -cHHHHHHHHhCCCEEEEEECCH
Confidence 1223444566888888877644
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=118.33 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.++..+..+...++.+|||+|||+|.+++.++..++ ++..|+|+|+++.+++.+++++..+ ....++++|
T Consensus 55 ~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d 130 (227)
T 1g8a_A 55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---WEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGD 130 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECC
T ss_pred chhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhC---CCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEcc
Confidence 355556665544433345788999999999999998887752 4569999999999999999988655 234889999
Q ss_pred hhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 104 IASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 104 ~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+... ....++||+|++++|.. + ....++..+.++|||||+++++..
T Consensus 131 ~~~~~~~~~~~~~~D~v~~~~~~~---~--------------------~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 131 ATKPEEYRALVPKVDVIFEDVAQP---T--------------------QAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCST---T--------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcchhhcccCCceEEEECCCCH---h--------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 877421 11246899999987721 0 134558999999999999998743
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=142.37 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=103.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ...|+++|+|+.+++.|++|+..|++. .+++++|+.+.+.. ..++||+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~----g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~-~~~~fD~ 612 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG----G-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE-ANEQFDL 612 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred CCCcEEEeeechhHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh-cCCCccE
Confidence 6899999999999999888764 2 236999999999999999999999986 38999999987544 3578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
|++|||++..+..... .......+..++..+.++|+|||+++++++..... .-...+.+.|++...+
T Consensus 613 Ii~DPP~f~~~~~~~~----------~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~-~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 613 IFIDPPTFSNSKRMED----------AFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR-MDLDGLAKLGLKAQEI 679 (703)
T ss_dssp EEECCCSBC-----------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC-CCHHHHHHTTEEEEEC
T ss_pred EEECCccccCCccchh----------HHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cCHHHHHHcCCceeee
Confidence 9999999764432110 01223457889999999999999999877653322 2256677778764443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=130.75 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=97.6
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC--------------------------------
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-------------------------------- 69 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-------------------------------- 69 (256)
+..+.++..++..... .++..|||++||+|.++++++.+.....|
T Consensus 177 pl~e~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 253 (384)
T 3ldg_A 177 PIKENMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADY 253 (384)
T ss_dssp CCCHHHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCcHHHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhc
Confidence 3467788877765432 46789999999999999999987654222
Q ss_pred --CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC
Q 025180 70 --GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG 145 (256)
Q Consensus 70 --~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~ 145 (256)
...|+|+|+++.+++.|++|+..+++.. +++++|+.+... ..+||+|++||||...-..+
T Consensus 254 ~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~---~~~fD~Iv~NPPYG~rl~~~------------- 317 (384)
T 3ldg_A 254 DIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT---NKINGVLISNPPYGERLLDD------------- 317 (384)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC---CCCSCEEEECCCCTTTTSCH-------------
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc---cCCcCEEEECCchhhccCCH-------------
Confidence 2569999999999999999999999864 899999988643 25899999999997543211
Q ss_pred CCcHHHHHHHHHHHhhcccc--CeEEEEEEe
Q 025180 146 ENGRAVIDKILPSADKLLSK--RGWLYLVTL 174 (256)
Q Consensus 146 ~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~ 174 (256)
.....+...+.+.||+ ||.+++++.
T Consensus 318 ----~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 318 ----KAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp ----HHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred ----HHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 1234444445555554 999999876
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=125.19 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHH-----HHcCC
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTL-----EAHNV 95 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-~~~~i~~a~~~~-----~~~~~ 95 (256)
+.++.+++++..... ..++.+|||+|||+|.+++.+++. + ..+|+|+|+ ++.+++.|++|+ ..+++
T Consensus 62 ~~~~~l~~~l~~~~~---~~~~~~vLDlG~G~G~~~~~~a~~----~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~ 133 (281)
T 3bzb_A 62 SGARALADTLCWQPE---LIAGKTVCELGAGAGLVSIVAFLA----G-ADQVVATDYPDPEILNSLESNIREHTANSCSS 133 (281)
T ss_dssp CHHHHHHHHHHHCGG---GTTTCEEEETTCTTSHHHHHHHHT----T-CSEEEEEECSCHHHHHHHHHHHHTTCC-----
T ss_pred cHHHHHHHHHHhcch---hcCCCeEEEecccccHHHHHHHHc----C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc
Confidence 447888888877643 146789999999999999887764 2 238999999 899999999999 44554
Q ss_pred c------ceEEEcchhhchhhh----cCCCccEEEE-CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 96 H------ADLINTDIASGLEKR----LAGLVDVMVV-NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 96 ~------~~~~~~d~~~~~~~~----~~~~fD~Ii~-npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. ..+...|+.+..... ..++||+|++ +..|+ .+ ....+++.+.++|+
T Consensus 134 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~---------------------~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 134 ETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQ---------------------AHDALLRSVKMLLA 191 (281)
T ss_dssp -----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GG---------------------GHHHHHHHHHHHBC
T ss_pred ccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hH---------------------HHHHHHHHHHHHhc
Confidence 3 366655544432221 2578999998 55543 11 15788999999999
Q ss_pred ---c--CeEEEEEEeCCC-----CHHHHHHHHHHcC-CcEEEEE
Q 025180 165 ---K--RGWLYLVTLTAN-----DPSQICLQMMEKG-YAARIVV 197 (256)
Q Consensus 165 ---p--gG~l~~~~~~~~-----~~~~~~~~~~~~g-~~~~~~~ 197 (256)
| ||+++++....+ ....+...+.+.| |....+.
T Consensus 192 ~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 192 LPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp CTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred ccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence 9 999887654432 1346677888899 8877664
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=126.39 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceE--EEEeCCHHHHHHHHHHHHHc-CCcc---eEEEcchhhchh----h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQY--IATDINPYAVEVTRKTLEAH-NVHA---DLINTDIASGLE----K 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v--~giD~~~~~i~~a~~~~~~~-~~~~---~~~~~d~~~~~~----~ 110 (256)
.++.+|||+|||+|.++..++..+..+++++.+ +|+|+|++|++.|++++... ++.. .+..+++.+... +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 466899999999998877666555444567755 99999999999999988653 3332 445666654321 1
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-------------
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------- 177 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------- 177 (256)
+.+++||+|++.-.+++.++ ...++.+++++|||||+++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 189 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD---------------------IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 189 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC---------------------HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGG
T ss_pred cCCCceeEEEEeeeeeecCC---------------------HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHh
Confidence 34678999999766654443 56889999999999999998754321
Q ss_pred ----------CHHHHHHHHHHcCCcEE
Q 025180 178 ----------DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 178 ----------~~~~~~~~~~~~g~~~~ 194 (256)
...++.+++.+.||...
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~aGf~~~ 216 (292)
T 2aot_A 190 FPQDDLCQYITSDDLTQMLDNLGLKYE 216 (292)
T ss_dssp SCCCTTCCCCCHHHHHHHHHHHTCCEE
T ss_pred ccCCCcccCCCHHHHHHHHHHCCCceE
Confidence 23466777777787654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-16 Score=126.19 Aligned_cols=131 Identities=15% Similarity=0.242 Sum_probs=93.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH------cCCcc-eEEEcchhhchhh-hc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA------HNVHA-DLINTDIASGLEK-RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~------~~~~~-~~~~~d~~~~~~~-~~ 112 (256)
.++.+|||+|||+|.+++.++.. .|++.|+|+|+++.+++.|++++.. .+..+ .++++|+.+.++. +.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~ 120 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPL----FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGG----STTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC
T ss_pred CCCCeEEEEccCCcHHHHHHHHH----CCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC
Confidence 46789999999999998777765 7888999999999999999988764 34444 8999999875442 34
Q ss_pred CCCccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 113 AGLVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 113 ~~~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+++||.|+++.| +..... ...+ .....++..+.++|||||++++.+............+...+
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h-------~krr--------~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTK-------HKWR--------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp TTCEEEEEEESCC--------------------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred CcCeeEEEEeCCCchhhhhh-------hhhh--------hhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 688999998653 211000 0000 01257899999999999999997754444455666666655
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=119.52 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++....+ ..+++++|+.+.. .+++||+|+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~---~~~~fD~v~ 119 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFS---TAELFDLIV 119 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCC---CSCCEEEEE
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCC---CCCCccEEE
Confidence 56789999999999988776654 3589999999999999999876543 4489999998874 357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+++.++. .....++..+.++|||||++++.++
T Consensus 120 ~~~~l~~~~~~------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 120 VAEVLYYLEDM------------------TQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EESCGGGSSSH------------------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EccHHHhCCCH------------------HHHHHHHHHHHHHcCCCCEEEEEec
Confidence 98776654432 1246789999999999999999664
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=128.75 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcceEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHADLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~~~~ 100 (256)
...+.+.+..... .++.+|||+|||+|.++..+++.+. ++.+|+|+|+++.+++.|++++... ....+++
T Consensus 22 ~~~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~ 94 (299)
T 3g5t_A 22 PSDFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELK---PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94 (299)
T ss_dssp CHHHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSS---CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEE
T ss_pred CHHHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEE
Confidence 3456666666542 4789999999999999988887631 5779999999999999999999876 3344899
Q ss_pred EcchhhchhhhcC------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 101 NTDIASGLEKRLA------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 101 ~~d~~~~~~~~~~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++|+.+.. +.. ++||+|+++..+++. + ...+++++.++|+|||++++..
T Consensus 95 ~~d~~~~~--~~~~~~~~~~~fD~V~~~~~l~~~-~---------------------~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 95 ISSSDDFK--FLGADSVDKQKIDMITAVECAHWF-D---------------------FEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp ECCTTCCG--GGCTTTTTSSCEEEEEEESCGGGS-C---------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCHHhCC--ccccccccCCCeeEEeHhhHHHHh-C---------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 99998753 223 789999997665433 1 5789999999999999998833
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-15 Score=118.87 Aligned_cols=125 Identities=20% Similarity=0.287 Sum_probs=96.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-h-hcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-K-RLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~-~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +++++|+|+++.+++.++++ ....+...|+.+... + ....+||+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccE
Confidence 46799999999999987766654 56899999999999999886 233788888877622 1 22356999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|+++..+. ..+ ...+++.+.++|||||++++..+..
T Consensus 120 v~~~~~l~-~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (227)
T 3e8s_A 120 ICANFALL-HQD---------------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAG 177 (227)
T ss_dssp EEEESCCC-SSC---------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSS
T ss_pred EEECchhh-hhh---------------------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhcccc
Confidence 99987776 222 3688999999999999999976421
Q ss_pred ---------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 ---------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 ---------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...+++.+.+.+.||....+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 178 DWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred CcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 1457899999999999877654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=126.96 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++.. +++|+|+|+++.+++.|++++...++. .+++.+|+.+. +++||+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~fD~ 158 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-----AEPVDR 158 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-----CCCCSE
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-----CCCcCE
Confidence 578899999999999988888763 459999999999999999999887764 38889998664 268999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
|+++..+.+.+.. ....+++.+.++|||||++++..+...
T Consensus 159 v~~~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 159 IVSIEAFEHFGHE-------------------NYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp EEEESCGGGTCGG-------------------GHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred EEEeChHHhcCHH-------------------HHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 9998665544321 157889999999999999999776443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=127.04 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++++.+.. ..+.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|+++ ....++++|
T Consensus 26 p~~l~~~l~~~~-----~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~ 89 (257)
T 4hg2_A 26 PRALFRWLGEVA-----PARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALRH-----PRVTYAVAP 89 (257)
T ss_dssp CHHHHHHHHHHS-----SCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCCC-----TTEEEEECC
T ss_pred HHHHHHHHHHhc-----CCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhhc-----CCceeehhh
Confidence 356778777764 35689999999999987766654 35899999999999877542 234889999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.+. ++.+++||+|++.-.++..+ ...++.++.++|||||+++++.....
T Consensus 90 ~e~~--~~~~~sfD~v~~~~~~h~~~----------------------~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 90 AEDT--GLPPASVDVAIAAQAMHWFD----------------------LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp TTCC--CCCSSCEEEEEECSCCTTCC----------------------HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred hhhh--cccCCcccEEEEeeehhHhh----------------------HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 8776 44578999999976654321 46789999999999999998776443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=131.49 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----------------------------------
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP---------------------------------- 69 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~---------------------------------- 69 (256)
.+.+++.++..... .++.+|||+|||+|.++++++.+.....|
T Consensus 180 ~e~lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 180 RETLAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CHHHHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred cHHHHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 57788877776532 46789999999999999999987543222
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCC
Q 025180 70 GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN 147 (256)
Q Consensus 70 ~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~ 147 (256)
...|+|+|+++.+++.|++|+..+++. .++.++|+.+... +.+||+|++||||......
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---~~~~D~Iv~NPPyg~rl~~---------------- 317 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS---EDEFGFIITNPPYGERLED---------------- 317 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---SCBSCEEEECCCCCCSHHH----------------
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc---CCCCcEEEECCCCcCccCC----------------
Confidence 257999999999999999999999986 3899999988643 3689999999999743211
Q ss_pred cHHHHHHHHHHHhhcccc--CeEEEEEEeC
Q 025180 148 GRAVIDKILPSADKLLSK--RGWLYLVTLT 175 (256)
Q Consensus 148 ~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~ 175 (256)
......+...+.+.|++ ||.+++++..
T Consensus 318 -~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 318 -KDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp -HHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred -HHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 11234445555555555 8999887753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=136.82 Aligned_cols=161 Identities=10% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC--------------CceEEEEeCCH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP--------------GVQYIATDINP 80 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~--------------~~~v~giD~~~ 80 (256)
..+|+|+....++++.+ . +.++.+|||+|||+|.+++.++..+.+... ...++|+|+++
T Consensus 149 G~fyTP~~iv~~mv~~l----~---p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~ 221 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLL----K---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 221 (541)
T ss_dssp -CCCCCHHHHHHHHHHH----C---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred CeeeCCHHHHHHHHHHh----c---cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH
Confidence 34889966555555433 2 246789999999999999999887654331 24799999999
Q ss_pred HHHHHHHHHHHHcCCc------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHH
Q 025180 81 YAVEVTRKTLEAHNVH------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDK 154 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.+++.|+.|+..+++. ..+.++|...... ....+||+|++||||.......... .+. ...+ .....
T Consensus 222 ~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~-~~~~~fD~Vv~NPPf~~~~~~~~~~-----~~~-~~~~-~~~~~ 293 (541)
T 2ar0_A 222 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITR-----TFV-HPTS-NKQLC 293 (541)
T ss_dssp HHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHH-HTSCCEEEEEECCCCTTCSSCCCCS-----CCS-SCCS-CHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccCCeEeCCCccccc-ccccCCeEEEECCCcccccchhhHh-----hcC-CCCC-chHHH
Confidence 9999999999988876 4789999776432 2246899999999998765533100 010 0111 11347
Q ss_pred HHHHHhhccccCeEEEEEEeCC---C--CHHHHHHHHHHcC
Q 025180 155 ILPSADKLLSKRGWLYLVTLTA---N--DPSQICLQMMEKG 190 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~---~--~~~~~~~~~~~~g 190 (256)
++..+.++|+|||++.++.+.. . ....+++.+.+.+
T Consensus 294 Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 294 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence 8899999999999999988743 1 2345777776654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=125.34 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=79.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++.. ...++++|+.+... +++||+|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL---GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC---SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc---cCCcCEEEE
Confidence 5689999999999987666554 3589999999999999998753 34899999987532 578999999
Q ss_pred CC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 122 NP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 122 np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+. .+.+..+ ......+++.+.++|||||++++.
T Consensus 117 ~~~~l~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 117 MFSSIGHLAG------------------QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CTTGGGGSCH------------------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCchhhhcCC------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 76 5543322 123578899999999999999984
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=122.75 Aligned_cols=102 Identities=14% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|..++.++.. .++.+|+++|+++.+++.|++++...++. .+++.+|+.+..+...+++||+|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASI----SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTT----CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEE
Confidence 6789999999999998888774 56789999999999999999999998875 39999999887651235789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+++.+.. .+..+++.+.++|+|||++++
T Consensus 147 ~~~~~~~------------------------~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 147 FIDAAKA------------------------QSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEETTSS------------------------SHHHHHHHHGGGEEEEEEEEE
T ss_pred EEcCcHH------------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 9975421 156789999999999999987
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=131.40 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC--------------------------------
Q 025180 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-------------------------------- 69 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-------------------------------- 69 (256)
+..+.++..++..... .++..|||+|||+|.++++++.+.....|
T Consensus 184 pl~e~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 260 (393)
T 3k0b_A 184 PIKETMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY 260 (393)
T ss_dssp SCCHHHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCcHHHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence 3467788877766432 46789999999999999999987654222
Q ss_pred --CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC
Q 025180 70 --GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG 145 (256)
Q Consensus 70 --~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~ 145 (256)
...|+|+|+++.+++.|++|+..+++. .+++++|+.+... +.+||+|++||||.......
T Consensus 261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---~~~fD~Iv~NPPYg~rl~~~------------- 324 (393)
T 3k0b_A 261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPYGERLEDE------------- 324 (393)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---CCCSCEEEECCCCCCSHHHH-------------
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC---CCCCCEEEECCCCccccCCc-------------
Confidence 256999999999999999999999986 3899999988643 35899999999997432110
Q ss_pred CCcHHHHHHHHHHHhhcccc--CeEEEEEEe
Q 025180 146 ENGRAVIDKILPSADKLLSK--RGWLYLVTL 174 (256)
Q Consensus 146 ~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~ 174 (256)
..+..+...+.+.||+ ||.+++++.
T Consensus 325 ----~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 325 ----EAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp ----HHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred ----hhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1133344444444544 999999775
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-15 Score=115.31 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=100.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. ...++.+|+.+.. ..+++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~--~~~~~~D~i~ 112 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQ--ISETDFDLIV 112 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSC--CCCCCEEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCC--CCCCceeEEE
Confidence 47889999999999998877764 4589999999999999988752 2488899987752 2357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++..+... ......++..+.++|+|||++++..+... ...++.+.+.+.||.......
T Consensus 113 ~~~~~~~~~~------------------~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 113 SAGNVMGFLA------------------EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp ECCCCGGGSC------------------HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred ECCcHHhhcC------------------hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeec
Confidence 9865432211 11257889999999999999999776543 567889999999999877654
Q ss_pred c
Q 025180 199 R 199 (256)
Q Consensus 199 ~ 199 (256)
.
T Consensus 175 ~ 175 (195)
T 3cgg_A 175 S 175 (195)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-14 Score=128.85 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=114.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+.++++.+ .++++|+.+... ..+++||.|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~---~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-~~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN---NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-AVPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT---TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-HSTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-hccccCCEEE
Confidence 789999999999999999998753 34699999999999999999999999865 889999877532 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCC----CcHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHcC-Cc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGE----NGRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEKG-YA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~g-~~ 192 (256)
+|||+.....- .+.+...+.-.. .-......++..+.++|||||++++++++.. ....+...+.+++ +.
T Consensus 193 ~D~PcSg~G~~---~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~ 269 (479)
T 2frx_A 193 LDAPCSGEGVV---RKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAV 269 (479)
T ss_dssp EECCCCCGGGG---GTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTE
T ss_pred ECCCcCCcccc---cCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCce
Confidence 99998643211 111111100000 0012346789999999999999999887653 2334555566654 21
Q ss_pred E--------------------EEEEecCCCCccEEEEEEEecCc
Q 025180 193 A--------------------RIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 193 ~--------------------~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
. ..+++.....+.+++..++|...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~dGfF~A~l~k~~~ 313 (479)
T 2frx_A 270 EFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQA 313 (479)
T ss_dssp EECCCTTSSTTGGGGBCTTSCEEECTTTTTSCCEEEEEEEECSC
T ss_pred ecccccccccccccccccCCeEEECCCCCCcCccEEEEEEEcCC
Confidence 1 22334444556677777777553
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=118.36 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+...+ .++.+|||+|||+|.++..++.. .+++|+|+++.+++.|+++...++...+++.+|+
T Consensus 21 ~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~ 88 (243)
T 3d2l_A 21 PEWVAWVLEQV-----EPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM 88 (243)
T ss_dssp HHHHHHHHHHS-----CTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG
T ss_pred HHHHHHHHHHc-----CCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh
Confidence 45566666664 35689999999999987655432 5899999999999999999987776668999998
Q ss_pred hhchhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 105 ASGLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+... +++||+|+++. ++.+... ......+++.+.++|+|||++++.
T Consensus 89 ~~~~~---~~~fD~v~~~~~~~~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 89 RELEL---PEPVDAITILCDSLNYLQT------------------EADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GGCCC---SSCEEEEEECTTGGGGCCS------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCC---CCCcCEEEEeCCchhhcCC------------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 77532 37899999975 3332211 123678899999999999999874
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=121.48 Aligned_cols=128 Identities=12% Similarity=0.131 Sum_probs=97.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +. .+++|+|+++.+++.++++.... ..+++.+|+.+.. ..+++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~--~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH----GA-SYVLGLDLSEKMLARARAAGPDT--GITYERADLDKLH--LPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHTSCSS--SEEEEECCGGGCC--CCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC----CC-CeEEEEcCCHHHHHHHHHhcccC--CceEEEcChhhcc--CCCCCceEEE
Confidence 47789999999999998777664 22 28999999999999998875432 3488899987753 3357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
++.++.+.++ ...+++.+.++|+|||++++..+..
T Consensus 113 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (243)
T 3bkw_A 113 SSLALHYVED---------------------VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDR 171 (243)
T ss_dssp EESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECC
T ss_pred Eeccccccch---------------------HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecc
Confidence 9876554322 5688999999999999999865310
Q ss_pred --------------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 --------------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --------------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++.+.+.+.||..+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 172 YLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp TTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 1356788889999998766653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=121.30 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=69.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++++..+++. .+++++|+.+... +++||+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v 148 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---FLKADVV 148 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---GCCCSEE
T ss_pred CCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---cCCCCEE
Confidence 6899999999999999888875 369999999999999999999999973 4999999988752 4789999
Q ss_pred EECCCCCCCCC
Q 025180 120 VVNPPYVPTPE 130 (256)
Q Consensus 120 i~npP~~~~~~ 130 (256)
+++|||.....
T Consensus 149 ~~~~~~~~~~~ 159 (241)
T 3gdh_A 149 FLSPPWGGPDY 159 (241)
T ss_dssp EECCCCSSGGG
T ss_pred EECCCcCCcch
Confidence 99999986544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-15 Score=121.73 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
..+..++..+. ..++.+|||+|||+|.++..++.. .|+.+++|+|+++.+++.++++ .....++.+|+.
T Consensus 20 ~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~ 88 (259)
T 2p35_A 20 RPARDLLAQVP---LERVLNGYDLGCGPGNSTELLTDR----YGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLA 88 (259)
T ss_dssp HHHHHHHTTCC---CSCCSSEEEETCTTTHHHHHHHHH----HCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTT
T ss_pred HHHHHHHHhcC---CCCCCEEEEecCcCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChh
Confidence 33444555443 357789999999999999888877 4677999999999999999887 223489999988
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.. .+++||+|+++..+++.++ ...++.++.++|+|||++++..+.
T Consensus 89 ~~~---~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 89 TWK---PAQKADLLYANAVFQWVPD---------------------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp TCC---CSSCEEEEEEESCGGGSTT---------------------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hcC---ccCCcCEEEEeCchhhCCC---------------------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 754 3578999999876654332 568899999999999999997753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=123.84 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=98.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CCcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NVHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... ....+++.+|+.+......+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRH----GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhC----CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 46789999999999988777654 45679999999999999999987431 1224899999988754223578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHHcCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~~g~ 191 (256)
||+|+++++....+... + ....+++.+.++|||||++++...... ....+.+.+++.||
T Consensus 170 fDvIi~d~~~~~~~~~~---------l--------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF 232 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASK---------L--------FGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGF 232 (304)
T ss_dssp EEEEEEECC--------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCccccchh---------h--------hHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCC
Confidence 99999988753211100 0 015789999999999999998654321 23467778888899
Q ss_pred cEEEEEec
Q 025180 192 AARIVVQR 199 (256)
Q Consensus 192 ~~~~~~~~ 199 (256)
.....+..
T Consensus 233 ~~v~~~~~ 240 (304)
T 3bwc_A 233 ASVQYALM 240 (304)
T ss_dssp SEEEEEEC
T ss_pred CcEEEEEe
Confidence 87665543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=118.73 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=95.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++ +|||+|||+|.++..++.. +.+++|+|+++.+++.|+++....+....++.+|+.+.. +.+++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD--IVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS--CCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC--CCcCCccEEEE
Confidence 45 9999999999987766653 459999999999999999999887776689999987762 33578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------------CHHHHHHH
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------------DPSQICLQ 185 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~ 185 (256)
+..+. + ......++..+.++|+|||++++...... ..+++.+.
T Consensus 101 ~~~~~--~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (202)
T 2kw5_A 101 IFCHL--P-------------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSE 159 (202)
T ss_dssp ECCCC--C-------------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHH
T ss_pred EhhcC--C-------------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHH
Confidence 64322 1 12367889999999999999999864321 34566666
Q ss_pred HHHcCCcEEEEE
Q 025180 186 MMEKGYAARIVV 197 (256)
Q Consensus 186 ~~~~g~~~~~~~ 197 (256)
+. ||+...+.
T Consensus 160 l~--Gf~v~~~~ 169 (202)
T 2kw5_A 160 LP--SLNWLIAN 169 (202)
T ss_dssp CS--SSCEEEEE
T ss_pred hc--CceEEEEE
Confidence 66 88765543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=121.36 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----G 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~ 114 (256)
++.+|||+|||+|..++.++.. .+ +++|+++|+++.+++.|++++...++. .+++++|+.+..+.... +
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLA----LPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTT----CCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred CCCEEEEeCCcchHHHHHHHHh----CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence 6789999999999998888776 34 679999999999999999999998876 38999999877554322 7
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++++. .....+++.+.++|+|||++++..
T Consensus 140 ~fD~v~~~~~~------------------------~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 140 QYDLIYIDADK------------------------ANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp CEEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccEEEECCCH------------------------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 89999998652 115678999999999999999844
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=124.62 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=98.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-C--Cc-ceEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-N--VH-ADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~--~~-~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..++..+ .++.+++++|+++.+++.|++++..+ + .. .+++.+|+.+.. +.+++|
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~~~~~~ 172 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--LPDGSV 172 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--CCTTCE
T ss_pred CCCCEEEEEcccccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--CCCCce
Confidence 578899999999999999888854 45679999999999999999999887 5 33 389999987762 235689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH-cCCcEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME-KGYAARI 195 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~g~~~~~ 195 (256)
|+|++++|- ...++..+.++|+|||++++..+......++...+.+ .+|....
T Consensus 173 D~v~~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 173 DRAVLDMLA--------------------------PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp EEEEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred eEEEECCcC--------------------------HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcE
Confidence 999998662 2366899999999999999988765555566666766 6676443
Q ss_pred E
Q 025180 196 V 196 (256)
Q Consensus 196 ~ 196 (256)
.
T Consensus 227 ~ 227 (280)
T 1i9g_A 227 A 227 (280)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=118.28 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=85.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc---CCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL---AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~---~~~ 115 (256)
++.+|||+|||+|..++.++.. .+ +++|+++|+++.+++.|++++...++.. +++.+|+.+...... .++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARG----LSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTT----CCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred CCCEEEEecCCccHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 6799999999999998888776 44 6799999999999999999999888753 899999987654432 257
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++++.. ....+++.+.++|+|||++++..
T Consensus 134 fD~v~~d~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 134 FDFIFIDADKQ------------------------NNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp CSEEEECSCGG------------------------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred cCEEEEcCCcH------------------------HHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999986521 15688999999999999888743
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=122.44 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=95.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--------CCcc-eEEEcchhhchhh-h
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--------NVHA-DLINTDIASGLEK-R 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--------~~~~-~~~~~d~~~~~~~-~ 111 (256)
++.+|||+|||+|.+++.++.. ++++.|+|+|+++.+++.+++++..+ ++.+ .++.+|+.+.++. +
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPA----FPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHH----STTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----CCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc
Confidence 6789999999999999998887 67789999999999999999998876 6654 8999999875543 3
Q ss_pred cCCCccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 112 LAGLVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 112 ~~~~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
..+++|.|+.+.| +...... ..+. ....++..+.++|+|||++++.+......+.+...+...
T Consensus 125 ~~~~~d~v~~~~p~p~~k~~~~-------~~r~--------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 189 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHFKQRKH-------KARI--------ITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189 (246)
T ss_dssp CTTCEEEEEEESCCCC-------------CSSC--------CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred cccccCEEEEECCCcccccchh-------HHhh--------ccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence 4578999987543 2111000 0000 125789999999999999999664333334555566666
Q ss_pred CC
Q 025180 190 GY 191 (256)
Q Consensus 190 g~ 191 (256)
++
T Consensus 190 ~~ 191 (246)
T 2vdv_E 190 PL 191 (246)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=120.58 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+...+ .++.+|||+|||+|.++..+++. ++. .++|+|+++.+++.++++... .....++.+|+
T Consensus 30 ~~~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~----~~~-~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~ 98 (215)
T 2pxx_A 30 SSFRALLEPEL-----RPEDRILVLGCGNSALSYELFLG----GFP-NVTSVDYSSVVVAAMQACYAH-VPQLRWETMDV 98 (215)
T ss_dssp HHHHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHT----TCC-CEEEEESCHHHHHHHHHHTTT-CTTCEEEECCT
T ss_pred HHHHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHc----CCC-cEEEEeCCHHHHHHHHHhccc-CCCcEEEEcch
Confidence 34445554443 46789999999999998877765 333 899999999999999998753 12348899998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|++++++....... ...|............++..+.++|+|||+++++.+.. ......
T Consensus 99 ~~~--~~~~~~fD~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~--~~~~~~ 168 (215)
T 2pxx_A 99 RKL--DFPSASFDVVLEKGTLDALLAGE------RDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA--PHFRTR 168 (215)
T ss_dssp TSC--CSCSSCEEEEEEESHHHHHTTTC------SCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC--HHHHHH
T ss_pred hcC--CCCCCcccEEEECcchhhhcccc------ccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC--cHHHHH
Confidence 775 33457899999987763221100 00000000112346789999999999999999977533 344555
Q ss_pred HHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 185 QMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 185 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
.+...++.+...........+++++...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (215)
T 2pxx_A 169 HYAQAYYGWSLRHATYGSGFHFHLYLMHK 197 (215)
T ss_dssp HHCCGGGCEEEEEEEESGGGCEEEEEEEE
T ss_pred HHhccccCcEEEEEEecCcceEEEEEEEe
Confidence 66555554333222223333444444433
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=124.47 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=106.9
Q ss_pred CCccccCCchHHHHHHHHHhhc-------------ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025180 15 PEVYEPCDDSFALVDALLADRI-------------NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~-------------~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++.|+++...+.+....... .+...++.+|||+|||+|.+++.+++. +.+++++|+++.
T Consensus 51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~ 124 (248)
T 2yvl_A 51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEE 124 (248)
T ss_dssp TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHH
T ss_pred EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHH
Confidence 5678888887777754433221 011247889999999999998888776 458999999999
Q ss_pred HHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025180 82 AVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++.|+++...+++. .++..+|+.+... .+++||+|++++|- ...+++.+
T Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~v~~~~~~--------------------------~~~~l~~~ 176 (248)
T 2yvl_A 125 FYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--PEGIFHAAFVDVRE--------------------------PWHYLEKV 176 (248)
T ss_dssp HHHHHHHHHHHTTCCTTEEEECSCTTTSCC--CTTCBSEEEECSSC--------------------------GGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCcEEEEEcChhhccc--CCCcccEEEECCcC--------------------------HHHHHHHH
Confidence 999999999888863 3888899877531 23689999998762 23568888
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.++|+|||++++..+......++...+.+. |..
T Consensus 177 ~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~ 209 (248)
T 2yvl_A 177 HKSLMEGAPVGFLLPTANQVIKLLESIENY-FGN 209 (248)
T ss_dssp HHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEE
T ss_pred HHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCc
Confidence 999999999999887554445555555554 543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=125.41 Aligned_cols=130 Identities=16% Similarity=0.092 Sum_probs=94.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++....+....++++|+.+...++.+++||+|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEA-----PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS-----CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhc-----CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEE
Confidence 47889999999999988776543 2348999999999999999988777755689999998875555668999999
Q ss_pred EC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------C-----HHHHHHH
Q 025180 121 VN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------D-----PSQICLQ 185 (256)
Q Consensus 121 ~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~-----~~~~~~~ 185 (256)
++ .+. ..... .......++.++.++|||||+++++..... . .+.....
T Consensus 134 ~d~~~~-~~~~~----------------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 1zx0_A 134 YDTYPL-SEETW----------------HTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp ECCCCC-BGGGT----------------TTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHH
T ss_pred ECCccc-chhhh----------------hhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHH
Confidence 94 221 00000 012356789999999999999998543210 0 1234556
Q ss_pred HHHcCCc
Q 025180 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.||.
T Consensus 197 l~~aGF~ 203 (236)
T 1zx0_A 197 LLEAGFR 203 (236)
T ss_dssp HHHTTCC
T ss_pred HHHCCCC
Confidence 7788887
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-15 Score=114.09 Aligned_cols=134 Identities=11% Similarity=0.195 Sum_probs=98.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. + .+++|+|+++.+++.++++ ....++..+| .++.+++||+|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEF----A--TKLYCIDINVIALKEVKEK----FDSVITLSDP-----KEIPDNSVDFIL 80 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTT----E--EEEEEECSCHHHHHHHHHH----CTTSEEESSG-----GGSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhh----c--CeEEEEeCCHHHHHHHHHh----CCCcEEEeCC-----CCCCCCceEEEE
Confidence 57789999999999988777665 2 3899999999999999887 2234888888 233457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------------CHHHHHHHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------------DPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------~~~~~~~~~~~ 188 (256)
++..+.+.++ ...+++++.++|||||++++...... ..+++.+.+.
T Consensus 81 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 138 (170)
T 3i9f_A 81 FANSFHDMDD---------------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS- 138 (170)
T ss_dssp EESCSTTCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-
T ss_pred EccchhcccC---------------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-
Confidence 9887765533 46889999999999999999765332 2456777776
Q ss_pred cCCcEEEEEecCCCCccEEEEEEEecC
Q 025180 189 KGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 189 ~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
||+........ ...+.+.+.+..
T Consensus 139 -Gf~~~~~~~~~---~~~~~l~~~~~~ 161 (170)
T 3i9f_A 139 -NFVVEKRFNPT---PYHFGLVLKRKT 161 (170)
T ss_dssp -TEEEEEEECSS---TTEEEEEEEECC
T ss_pred -CcEEEEccCCC---CceEEEEEecCC
Confidence 88876655432 233455555544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=118.76 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-~~~f 116 (256)
.++.+|||+|||+|..++.++.. .+ +++|+++|+++.+++.|++++...++. .+++.+|+.+.++... .++|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARE----LPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTT----SCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence 36799999999999998888776 34 679999999999999999999998876 3899999988655432 2489
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++.+. .....+++.+.++|||||++++...
T Consensus 138 D~V~~d~~~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 138 DLIFIDADK------------------------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp SEEEECSCG------------------------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEECCch------------------------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 999997541 1156789999999999999988543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=124.86 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +...++|+|+++.+++.|++++...+.. ..++++|+.+.... .+++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~ 136 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-----GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDV 136 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-----TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-CCCCcCE
Confidence 57899999999999988776664 2348999999999999999999877663 38899998875221 3578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
|+++..+++.. ........++..+.++|||||++++..+.
T Consensus 137 v~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 137 ISSQFSFHYAF-----------------STSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEESCGGGGG-----------------SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEECchhhhhc-----------------CCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99975543200 01223678999999999999999997753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=121.40 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-----CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-----~~ 114 (256)
++++|||+|||+|..++.+++.+. ++++|+++|+++.+++.|++++...++. .+++.+|+.+.++... .+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIP---EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSC---TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 578999999999999999988742 2679999999999999999999998874 3899999987654331 57
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+||+|+++.+.. .+..+++.+.++|+|||++++.
T Consensus 156 ~fD~V~~d~~~~------------------------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 156 SYDFIFVDADKD------------------------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp CBSEEEECSCST------------------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred CEEEEEEcCchH------------------------HHHHHHHHHHHhCCCCeEEEEe
Confidence 899999975410 1568899999999999999873
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=125.51 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=110.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+..+ ..||+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 251 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP----VTADV 251 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----CCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHH----CCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC----CCCCE
Confidence 46789999999999998888877 67889999999 99999999999888875 4899999876432 34999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CC--------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TA-------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~-------------------- 176 (256)
|+++..+++.++. ....+++++.++|+|||+++++.. ..
T Consensus 252 v~~~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (374)
T 1qzz_A 252 VLLSFVLLNWSDE-------------------DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM 312 (374)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhC
Confidence 9997766543321 135889999999999999998665 21
Q ss_pred ----CCHHHHHHHHHHcCCcEEEEEecCCCC--ccEEEEEEEecC
Q 025180 177 ----NDPSQICLQMMEKGYAARIVVQRSTEE--ENLHIIKFWRDF 215 (256)
Q Consensus 177 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~l~~~~~~~ 215 (256)
...+++.+++.+.||....+....... ....++++.+..
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence 145577888889999887766543211 112566666643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-15 Score=126.98 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=88.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------C-----cceEEEcchhhch
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------V-----HADLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~-----~~~~~~~d~~~~~ 108 (256)
.++.+|||+|||+|.+++.++..+ ++...|+|+|+++.+++.|++++...+ + ..+++.+|+.+..
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~---g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAV---GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 578999999999999999888864 355699999999999999999988532 1 3489999998764
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.++.+++||+|++++|.. ..++..+.++|+|||++++..+......+..+.+.+
T Consensus 181 ~~~~~~~fD~V~~~~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 234 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLNP--------------------------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT 234 (336)
T ss_dssp -------EEEEEECSSST--------------------------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCCeeEEEECCCCH--------------------------HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 344456899999987521 235889999999999999877644444455555555
Q ss_pred c
Q 025180 189 K 189 (256)
Q Consensus 189 ~ 189 (256)
.
T Consensus 235 ~ 235 (336)
T 2b25_A 235 C 235 (336)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=122.86 Aligned_cols=142 Identities=13% Similarity=0.235 Sum_probs=108.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+.. +..||+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----p~~~D~ 271 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDA----FPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI----PDGADV 271 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC----CSSCSE
T ss_pred ccCcEEEEeCCCccHHHHHHHHH----CCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC----CCCceE
Confidence 46789999999999998888877 78889999999 99999999999888764 389999988432 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.++..++. ....+++++.+.|+|||+++++.....
T Consensus 272 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~ 332 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-------------------DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGA 332 (369)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred EEhhhhhccCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCc
Confidence 9997665443322 145789999999999999999764322
Q ss_pred --CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025180 178 --DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
..+++.+++++.||+...+...... ...+++..
T Consensus 333 ~~t~~e~~~ll~~aGf~~~~~~~~~~~--~~svie~~ 367 (369)
T 3gwz_A 333 ERSESEFAALLEKSGLRVERSLPCGAG--PVRIVEIR 367 (369)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEECSSS--SEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCeEEEEEECCCC--CcEEEEEE
Confidence 2457788888899998877663222 23455544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-15 Score=128.06 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=93.5
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH--
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-- 91 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-- 91 (256)
.+.+|-+.. ..++..++..+. ..++.+|||+|||+|.+++.++.. .+...++|||+++.+++.|++++.
T Consensus 150 s~~vYGEt~--~~~i~~il~~l~---l~~gd~VLDLGCGtG~l~l~lA~~----~g~~kVvGIDiS~~~lelAr~n~e~f 220 (438)
T 3uwp_A 150 SPEVYGETS--FDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAA----TNCKHHYGVEKADIPAKYAETMDREF 220 (438)
T ss_dssp CGGGGGGTH--HHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHHH----CCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCcccCCCC--HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 344555553 444555666553 368899999999999999988876 333369999999999999988653
Q ss_pred -----HcCC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 92 -----AHNV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 92 -----~~~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
.+++ ..+++++|+.+......-..||+|++|++|+. + .....|.++.+.|
T Consensus 221 rkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~-p---------------------dl~~aL~Ei~RvL 278 (438)
T 3uwp_A 221 RKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG-P---------------------EVDHQLKERFANM 278 (438)
T ss_dssp HHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCC-H---------------------HHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccccC-c---------------------hHHHHHHHHHHcC
Confidence 3454 24899999987632210147999999988752 1 1456678889999
Q ss_pred ccCeEEEEEE
Q 025180 164 SKRGWLYLVT 173 (256)
Q Consensus 164 kpgG~l~~~~ 173 (256)
||||++++..
T Consensus 279 KPGGrIVssE 288 (438)
T 3uwp_A 279 KEGGRIVSSK 288 (438)
T ss_dssp CTTCEEEESS
T ss_pred CCCcEEEEee
Confidence 9999999854
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-15 Score=121.02 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=89.3
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
+++...+......++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+++....+....++++|+.+..
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc
Confidence 33333333332356789999999999998877764 458999999999999999999888777799999998753
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. +++||+|++........ .......++..+.++|+|||++++..+.
T Consensus 102 ~---~~~fD~v~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 F---KNEFDAVTMFFSTIMYF------------------DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp C---CSCEEEEEECSSGGGGS------------------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c---CCCccEEEEcCCchhcC------------------CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 36899999853211100 0123678899999999999999986553
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=121.34 Aligned_cols=133 Identities=12% Similarity=0.090 Sum_probs=95.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEEEC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
.+|||||||+|.++.++++. +|+.+++++|+++.+++.|++++..... ..+++.+|+.+.+....+++||+|+++
T Consensus 91 ~rVLdIG~G~G~la~~la~~----~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADV----YPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHH----STTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CEEEEEECCcCHHHHHHHHH----CCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 49999999999998888776 6788999999999999999998764422 238999999987655445789999998
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---HHHHHHHHHcCCcEEEEEe
Q 025180 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---SQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 198 (256)
.+........ .....+++.+.++|+|||++++........ ..+.+.+.+. |....++.
T Consensus 167 ~~~~~~~~~~-----------------L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~ 227 (317)
T 3gjy_A 167 VFAGAITPQN-----------------FTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIA 227 (317)
T ss_dssp CSTTSCCCGG-----------------GSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CCCccccchh-----------------hhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEE
Confidence 6432111100 012578999999999999999876543322 2344455444 55544443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=115.86 Aligned_cols=118 Identities=17% Similarity=0.280 Sum_probs=85.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.++.. +...|+|+|+++.+++.|++++. ..+++++|+.+. +++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-----~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~-----~~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-----GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-----TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHC-----CCCeeEEE
Confidence 46789999999999998887764 22379999999999999999865 458999998874 26899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+||||++..... ...+++.+.+.+ |.++++... .....+.+.+...| ....+
T Consensus 116 ~~~p~~~~~~~~-------------------~~~~l~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 116 MNPPFGSVVKHS-------------------DRAFIDKAFETS---MWIYSIGNA-KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp ECCCC--------------------------CHHHHHHHHHHE---EEEEEEEEG-GGHHHHHHHHHHHE-EEEEE
T ss_pred ECCCchhccCch-------------------hHHHHHHHHHhc---CcEEEEEcC-chHHHHHHHHHHCC-CEEEE
Confidence 999998654311 235677777777 445554443 34567777888887 55444
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=118.19 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=85.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ++.+++|+|+++.+++.+++++...+...+++++|+.+. ++.+++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-----DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL--PFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-----TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-----CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC--CCCCCceeEEE
Confidence 46799999999999875443332 356999999999999999999887776668999998775 23457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++.++++.+. .....++..+.++|||||++++....
T Consensus 95 ~~~~l~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 95 SYGTIFHMRK-------------------NDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp ECSCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcChHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9765543321 23678899999999999999997653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=123.60 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=109.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++++...++. .+++.+|+.+.. +.+||+|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----p~~~D~v 239 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTA----HEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL----PAGAGGY 239 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----CCSCSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHH----CCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC----CCCCcEE
Confidence 4689999999999998888776 78889999999 99999999999888764 389999987432 2389999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------CC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------ND 178 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------~~ 178 (256)
++.-.+++.+++ ....+++++.+.|+|||+++++.... ..
T Consensus 240 ~~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t 300 (332)
T 3i53_A 240 VLSAVLHDWDDL-------------------SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERS 300 (332)
T ss_dssp EEESCGGGSCHH-------------------HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCC
T ss_pred EEehhhccCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCC
Confidence 997655443332 25789999999999999999976422 23
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 179 PSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
.+++.+++.+.||+...+..... ..+++.++
T Consensus 301 ~~e~~~ll~~aGf~~~~~~~~~~----~~vie~r~ 331 (332)
T 3i53_A 301 LAELGELAAQAGLAVRAAHPISY----VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHHTTEEEEEEEECSS----SEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCC----cEEEEEee
Confidence 56788899999999887776543 45566543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=119.60 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=87.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc-CCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL-AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~-~~~fD 117 (256)
.++.+|||+|||+|..++.++.. .|+.+|+++|+++.+++.|++++...++. ..++.+|+.+..+... +++||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQA----LPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHH----CTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence 36789999999999999888887 56779999999999999999999988874 3899999887644321 47899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+.. ....+++.+.++|+|||++++..
T Consensus 129 ~I~~~~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAKG------------------------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGGS------------------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCHH------------------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 999976531 15788999999999999999853
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=123.03 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----ce
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-----AD 98 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-----~~ 98 (256)
...+.+++.+.+.. .++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+.. ..
T Consensus 42 ~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 112 (293)
T 3thr_A 42 TAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV 112 (293)
T ss_dssp CHHHHHHHHHHHHH---TTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCE
T ss_pred HHHHHHHHHHHhcc---cCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhhhcccccccceee
Confidence 45555666655532 46789999999999998877765 459999999999999999987554332 26
Q ss_pred EEEcchhhchhh-hcCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 99 LINTDIASGLEK-RLAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 99 ~~~~d~~~~~~~-~~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..+|+.+.... +.+++||+|+++ ..+.+.++.. ........+++++.++|||||++++..+.
T Consensus 113 ~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 113 IEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSK--------------GDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSS--------------SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EeecChhhCccccccCCCeEEEEEcChHHhhcCccc--------------cCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 788888775321 245789999997 4554433300 01123678999999999999999997763
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=129.54 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=95.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------------------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------------------------- 95 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------------------------- 95 (256)
++++|||+|||+|.+++.++.. +++.+|+|+|+++.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~----~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACK----WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHH----TCCSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHH----cCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 6899999999999999988887 5677999999999999999998765431
Q ss_pred ---------------------------------cceEEEcchhhch---hhhcCCCccEEEECCCCCCCCCcccccccch
Q 025180 96 ---------------------------------HADLINTDIASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 96 ---------------------------------~~~~~~~d~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
...+.++|+.... .+...++||+|+|.....+ .+
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~----------ih 191 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKW----------VH 191 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHH----------HH
T ss_pred ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHH----------hh
Confidence 2378888887543 1234688999999643210 00
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------CHHHHHHHHHH--cCCcEEEE
Q 025180 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------------DPSQICLQMME--KGYAARIV 196 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------~~~~~~~~~~~--~g~~~~~~ 196 (256)
.. .+......+++.+.++|+|||++++....+. ..+++..++.+ .||....+
T Consensus 192 l~-----~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 192 LN-----WGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HH-----HHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred hc-----CCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEE
Confidence 00 0112367899999999999999998532211 13456667776 78876544
Q ss_pred E
Q 025180 197 V 197 (256)
Q Consensus 197 ~ 197 (256)
.
T Consensus 267 ~ 267 (292)
T 3g07_A 267 V 267 (292)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=122.77 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=84.0
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
.++.+++.+. ..++.+|||+|||+|.+++.+++. ++.|+|+|+|+.|++.|++++..+.....+...+..
T Consensus 33 ~~~~il~~l~---l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~- 102 (261)
T 3iv6_A 33 DRENDIFLEN---IVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE- 102 (261)
T ss_dssp HHHHHHHTTT---CCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC-
T ss_pred HHHHHHHhcC---CCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccc-
Confidence 3445555443 357899999999999999888775 458999999999999999987644222222222220
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
.....+++||+|+++..+++.... ....++..+.++| |||++++.......
T Consensus 103 -~~~~~~~~fD~Vv~~~~l~~~~~~-------------------~~~~~l~~l~~lL-PGG~l~lS~~~g~~ 153 (261)
T 3iv6_A 103 -IPKELAGHFDFVLNDRLINRFTTE-------------------EARRACLGMLSLV-GSGTVRASVKLGFY 153 (261)
T ss_dssp -CCGGGTTCCSEEEEESCGGGSCHH-------------------HHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred -cccccCCCccEEEEhhhhHhCCHH-------------------HHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence 011124789999998776543321 2567899999999 99999997765443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=127.45 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=101.5
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.++ +|+.... ++.+++++.+ + .++.+|||+|||+|.+++.+++. ...|+|+|+++.+++.|++
T Consensus 263 f~~~~~~F~q~n~~~~e~l~~~~~~-~-----~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~ 330 (425)
T 2jjq_A 263 YLIHPNSFFQTNSYQAVNLVRKVSE-L-----VEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARR 330 (425)
T ss_dssp EEECTTSCCCSBHHHHHHHHHHHHH-H-----CCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred EEEccccccccCHHHHHHHHHHhhc-c-----CCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHH
Confidence 445555 4544433 6677777766 2 46789999999999999988875 3489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++++.+++.+|+.+... .+||+|++|||+... ...+++.+. .|+|+|+
T Consensus 331 n~~~ngl~v~~~~~d~~~~~~----~~fD~Vv~dPPr~g~-----------------------~~~~~~~l~-~l~p~gi 382 (425)
T 2jjq_A 331 NVEINNVDAEFEVASDREVSV----KGFDTVIVDPPRAGL-----------------------HPRLVKRLN-REKPGVI 382 (425)
T ss_dssp HHHHHTCCEEEEECCTTTCCC----TTCSEEEECCCTTCS-----------------------CHHHHHHHH-HHCCSEE
T ss_pred HHHHcCCcEEEEECChHHcCc----cCCCEEEEcCCccch-----------------------HHHHHHHHH-hcCCCcE
Confidence 999988777899999988642 289999999996311 123455444 4899999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 169 LYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+++++. ...+.+.+....|....+
T Consensus 383 vyvsc~----p~tlarDl~~l~y~l~~~ 406 (425)
T 2jjq_A 383 VYVSCN----PETFARDVKMLDYRIDEI 406 (425)
T ss_dssp EEEESC----HHHHHHHHHHSSCCEEEE
T ss_pred EEEECC----hHHHHhHHhhCeEEEEEE
Confidence 998653 233333333333555443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=120.55 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHH---HHHHHHcCCcc-eEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVT---RKTLEAHNVHA-DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~-~~~i~~a---~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.+++.+++. .+++.|+|+|+| +.+++.| ++++...++.+ .++++|+.+.... ..+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~----~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~-~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIN----DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFE-LKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHT----CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGG-GTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhh-ccCe
Confidence 47889999999999998877765 678899999999 6666665 77777777764 8999998876322 2377
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHH
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPS 180 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~ 180 (256)
+|.|.+++|+... ..... .....++.++.++|||||+++++..... ...
T Consensus 98 v~~i~~~~~~~~~----------~~~~~------~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
T 3p2e_A 98 ADSISILFPWGTL----------LEYVI------KPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKA 161 (225)
T ss_dssp EEEEEEESCCHHH----------HHHHH------TTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHH
T ss_pred EEEEEEeCCCcHH----------hhhhh------cchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChh
Confidence 8999998886320 00000 0024678999999999999998332111 111
Q ss_pred -----HHHHHHHHcCCcEEEE
Q 025180 181 -----QICLQMMEKGYAARIV 196 (256)
Q Consensus 181 -----~~~~~~~~~g~~~~~~ 196 (256)
++...+.+.||.+...
T Consensus 162 ~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 162 YFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp HHHSHHHHHHHHHHTCEEEEE
T ss_pred hcchHHHHHHHHHcCCCeeee
Confidence 2667777788876544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=123.73 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=95.9
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+...+..++.+....-+.+.. +.-.....+.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++
T Consensus 90 l~ldg~~~~~~~de~~y~e~L~~-l~l~~~~~~~~VLdIG~G~G~~a~~la~~----~~~~~V~~VDis~~~l~~Ar~~~ 164 (334)
T 1xj5_A 90 LVLDGVIQLTERDECAYQEMITH-LPLCSIPNPKKVLVIGGGDGGVLREVARH----ASIEQIDMCEIDKMVVDVSKQFF 164 (334)
T ss_dssp EEETTEEEEETTTHHHHHHHHHH-HHHTTSSCCCEEEEETCSSSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHC
T ss_pred EEECCEeecCcCcchHHHHHHHH-HHHhhCCCCCEEEEECCCccHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHH
Confidence 44566677777662222222221 11111135689999999999987766654 55679999999999999999998
Q ss_pred HHc--CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 91 EAH--NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 91 ~~~--~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
... ++ ..+++.+|+.+.+....+++||+|++|++-..... . + .....+++.+.++|+|
T Consensus 165 ~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~--------~--------~-l~~~~~l~~~~~~Lkp 227 (334)
T 1xj5_A 165 PDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPA--------K--------E-LFEKPFFQSVARALRP 227 (334)
T ss_dssp HHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGG--------G--------G-GGSHHHHHHHHHHEEE
T ss_pred HhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcc--------h--------h-hhHHHHHHHHHHhcCC
Confidence 753 33 34899999988754433578999999875211000 0 0 0136889999999999
Q ss_pred CeEEEEE
Q 025180 166 RGWLYLV 172 (256)
Q Consensus 166 gG~l~~~ 172 (256)
||++++.
T Consensus 228 gG~lv~~ 234 (334)
T 1xj5_A 228 GGVVCTQ 234 (334)
T ss_dssp EEEEEEE
T ss_pred CcEEEEe
Confidence 9999985
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=117.04 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++.+|||+|||+|..++.++.. .+ +.+|+++|+++.+++.|++++...++.. +++.+|+.+..+.. ++ ||+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARA----ISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-RD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTT----SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-CS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-CC-CCE
Confidence 5789999999999998888776 34 6799999999999999999999888743 89999998765432 45 999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+++.+.. ....+++.+.++|+|||++++.
T Consensus 130 v~~~~~~~------------------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 130 LFMDCDVF------------------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp EEEETTTS------------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEcCChh------------------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 99974311 1578899999999999999874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-14 Score=122.45 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=108.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++++...++. .+++.+|+.+. +. ..+|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~--~~~D~ 259 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY--PEADA 259 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CC--CCCSE
T ss_pred CCCCEEEEECCcccHHHHHHHHH----CCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CC--CCCCE
Confidence 46789999999999998888877 78889999999 99999999999888765 38999999875 22 23499
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---------------------C-
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---------------------A- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------~- 176 (256)
|++...+++.++ .....+++++.+.|+|||+++++... .
T Consensus 260 v~~~~vlh~~~d-------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (359)
T 1x19_A 260 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPF 320 (359)
T ss_dssp EEEESCGGGSCH-------------------HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSC
T ss_pred EEEechhccCCH-------------------HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCC
Confidence 999766544332 12578899999999999999887621 1
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+++.+++++.||+...+.... ...++++.|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~----~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY----DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET----TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC----CceEEEEeC
Confidence 345678899999999887766543 345555544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-14 Score=120.14 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|++ .+++.|++++...++. .+++.+|+.+.. . +..||+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~ 235 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQH----NPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD--Y-GNDYDL 235 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHH----CTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC--C-CSCEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHH----CCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC--C-CCCCcE
Confidence 46789999999999998888877 678899999999 9999999999888875 389999987752 2 245999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-++++.++ .....+++.+.+.|+|||+++++.....
T Consensus 236 v~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (335)
T 2r3s_A 236 VLLPNFLHHFDV-------------------ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTP 296 (335)
T ss_dssp EEEESCGGGSCH-------------------HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSS
T ss_pred EEEcchhccCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCC
Confidence 999655443322 1256889999999999999998764322
Q ss_pred -----CHHHHHHHHHHcCCcEEEEEecC
Q 025180 178 -----DPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 178 -----~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
..+++.+.+.+.||....+....
T Consensus 297 ~~~~~t~~~~~~ll~~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 297 NGDAYTFAEYESMFSNAGFSHSQLHSLP 324 (335)
T ss_dssp SCCCCCHHHHHHHHHHTTCSEEEEECCT
T ss_pred CCCcCCHHHHHHHHHHCCCCeeeEEECC
Confidence 24577888899999987766543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=118.24 Aligned_cols=104 Identities=22% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~~ 114 (256)
++++|||+|||+|..++.+++.+. ++++++++|+++.+++.|++++...++.. +++.+|+.+.++... .+
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIP---DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence 678999999999999999988742 26799999999999999999999988853 899999988655431 47
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+||+|+++.+. ..+..+++.+.++|+|||++++.
T Consensus 147 ~fD~I~~d~~~------------------------~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 147 SYDFGFVDADK------------------------PNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp CEEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCEEEECCch------------------------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 89999997431 11578899999999999999884
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=123.09 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=110.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +++.+++++|+ +.+++.|++++...++. .+++.+|+.+..+ ..||+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 252 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP----RKADA 252 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS----SCEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHh----CCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC----CCccE
Confidence 46789999999999998888877 67889999999 99999999999888775 4899999876432 35999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-C---------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-A--------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~--------------------- 176 (256)
|++...+++.++. ....+++++.+.|+|||+++++... .
T Consensus 253 v~~~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (360)
T 1tw3_A 253 IILSFVLLNWPDH-------------------DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG 313 (360)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS
T ss_pred EEEcccccCCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcC
Confidence 9997665443321 1358899999999999999987644 1
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEecCCC--CccEEEEEEEec
Q 025180 177 ---NDPSQICLQMMEKGYAARIVVQRSTE--EENLHIIKFWRD 214 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~l~~~~~~ 214 (256)
...+++.+++++.||....+...... .....++++.+.
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 12456778888899988776654332 122466666653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=125.39 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=109.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
....+|||+|||+|.++..+++. +|+.+++++|+ +.+++.|++++...++. .+++.+|+.+...+. +++||+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-p~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQY----NKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-PTGFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHH----STTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-CCCCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC-CCCcCE
Confidence 46789999999999998888877 78889999999 99999999998877764 389999988752111 268999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 177 (256)
|++.-.++..++. ....+++++.+.|+|||+++++.....
T Consensus 252 v~~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (363)
T 3dp7_A 252 VWMSQFLDCFSEE-------------------EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAM 312 (363)
T ss_dssp EEEESCSTTSCHH-------------------HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHS
T ss_pred EEEechhhhCCHH-------------------HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhh
Confidence 9997665543332 246889999999999999998663211
Q ss_pred --------CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025180 178 --------DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 178 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
..+++.+++++.||+.+.+....... ..+++..+..
T Consensus 313 ~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~--~svi~~~~~~ 356 (363)
T 3dp7_A 313 ANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLG--HSILQCRLKE 356 (363)
T ss_dssp SCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTT--BEEEEEEEC-
T ss_pred hCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCC--ceEEEEeecc
Confidence 34567778888888876655443332 3455555543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=120.65 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++. ++++|+|+|+++.+++.++++. ....++.+|+.+.. + +++||+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~--~-~~~fD~v~ 122 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ------SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFR--V-DKPLDAVF 122 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH------TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCC--C-SSCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCC--c-CCCcCEEE
Confidence 4778999999999999877766 3569999999999999998864 23488999987753 2 57899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++..+.+.++ ...++.++.++|||||++++..+..
T Consensus 123 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 123 SNAMLHWVKE---------------------PEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcchhhhCcC---------------------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9876654332 4688999999999999999977654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.17 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=86.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhc----CCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~----~~~ 115 (256)
++.+|||+|||+|..++.++..+. ++++|+++|+++++++.|++++...++. .+++.+|+.+.+.... .++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~ 136 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALP---DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ 136 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSC---TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence 678999999999999999888632 3679999999999999999999998875 3899999988755421 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+. .....+++.+.++|+|||++++-.
T Consensus 137 fD~V~~d~~~------------------------~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 137 FDFIFIDADK------------------------TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEEEESCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EeEEEEcCCh------------------------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9999997541 115678999999999999999843
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=117.87 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++..++... +++.+|
T Consensus 63 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 133 (210)
T 3lbf_A 63 PYMVARMTELLE---LTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133 (210)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECC
Confidence 455566666553 257899999999999999888876 3589999999999999999999888765 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.+.... .++||+|+++.++.+.+ ..+.++|||||++++..+.
T Consensus 134 ~~~~~~~--~~~~D~i~~~~~~~~~~---------------------------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 134 GWQGWQA--RAPFDAIIVTAAPPEIP---------------------------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCGG--GCCEEEEEESSBCSSCC---------------------------THHHHTEEEEEEEEEEECS
T ss_pred cccCCcc--CCCccEEEEccchhhhh---------------------------HHHHHhcccCcEEEEEEcC
Confidence 9876443 47899999976543221 2467899999999997654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=119.03 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=85.6
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH------HHHHHHHHHHHcCCc--ceEEEcc-hhhchhh
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY------AVEVTRKTLEAHNVH--ADLINTD-IASGLEK 110 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~------~i~~a~~~~~~~~~~--~~~~~~d-~~~~~~~ 110 (256)
..++.+|||+|||+|.++..++... .++++|+|+|+++. +++.|++++...++. .+++.+| +.....+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~---g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 117 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQV---GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP 117 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH---CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC
Confidence 3578999999999999998888763 25579999999997 999999999887763 3888887 4333334
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+++||+|+++.++++.++ ...+++.+..+++|||++++...
T Consensus 118 ~~~~~fD~v~~~~~l~~~~~---------------------~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 118 IADQHFDRVVLAHSLWYFAS---------------------ANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp GTTCCCSEEEEESCGGGSSC---------------------HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCCCCEEEEEEccchhhCCC---------------------HHHHHHHHHHHhCCCCEEEEEEe
Confidence 44688999999887765443 23467777777788999999654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=122.10 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----------------CC---------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----------------NV--------- 95 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----------------~~--------- 95 (256)
++.+|||+|||+|...+.++. .++..|+|+|+|+.|++.|++++... +.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-----SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-----GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-----cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 678999999999994321111 23459999999999999998865321 10
Q ss_pred -----cceEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025180 96 -----HADLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 96 -----~~~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..+++.+|+.+..+ .+.+++||+|+++..+.+... .......++.++.++||||
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----------------~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP-----------------DLASFQRALDHITTLLRPG 208 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcC-----------------CHHHHHHHHHHHHHhcCCC
Confidence 01466678776322 123467999999765432111 1223678999999999999
Q ss_pred eEEEEEEe---------------CCCCHHHHHHHHHHcCCcEEEEE
Q 025180 167 GWLYLVTL---------------TANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 167 G~l~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|++++... ..-..+++.+.+.+.||....+.
T Consensus 209 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 209 GHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 99998631 12246788999999999876544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=117.72 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=86.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcC----C
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLA----G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~----~ 114 (256)
.++.+|||+|||+|..++.+++.+. ++.+|+++|+++.+++.|++++..+++. .+++.+|+.+....... +
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP---ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 3678999999999999888877531 2679999999999999999999988874 38999998876544321 6
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++++.. .+..+++.+.++|+|||++++..
T Consensus 145 ~~D~v~~d~~~~------------------------~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 145 TFDVAVVDADKE------------------------NCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp CEEEEEECSCST------------------------THHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccEEEECCCHH------------------------HHHHHHHHHHHHcCCCeEEEEEC
Confidence 899999987621 15688999999999999999843
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-14 Score=131.11 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=112.0
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC--------------------------------
Q 025180 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV-------------------------------- 68 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~-------------------------------- 68 (256)
.+..+.++..++..... .++..|||++||+|.++++++.+.....
T Consensus 172 apl~e~LAa~ll~~~~~---~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~ 248 (703)
T 3v97_A 172 APIKETLAAAIVMRSGW---QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA 248 (703)
T ss_dssp CSSCHHHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCC---CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 34467888888776532 4678999999999999999998753211
Q ss_pred ------CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchh
Q 025180 69 ------PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIAS 140 (256)
Q Consensus 69 ------~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~ 140 (256)
+...|+|+|+++.+++.|+.|+..+|+.. ++.++|+.+...+...++||+|++||||...-...
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~-------- 320 (703)
T 3v97_A 249 RKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSE-------- 320 (703)
T ss_dssp HHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CC--------
T ss_pred hhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccch--------
Confidence 23589999999999999999999999875 89999998865443334899999999996432211
Q ss_pred hhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025180 141 AWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
.....+...+....+.+.|||.+++++.. .++ ....|++...-..-..+.-...++.+
T Consensus 321 ------~~l~~ly~~l~~~lk~~~~g~~~~ilt~~----~~l---~~~~glk~~k~~~l~nG~l~~~~~~y 378 (703)
T 3v97_A 321 ------PALIALHSLLGRIMKNQFGGWNLSLFSAS----PDL---LSCLQLRADKQYKAKNGPLDCVQKNY 378 (703)
T ss_dssp ------HHHHHHHHHHHHHHHHHCTTCEEEEEESC----HHH---HHTTCCCEEEEEEEEETTEEEEEEEE
T ss_pred ------hHHHHHHHHHHHHHHhhCCCCeEEEEeCC----HHH---HHHhCCCcccceeeecCCEEEEEEEE
Confidence 01111223344455556789999998642 222 23567766544444444434444444
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-15 Score=122.17 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..++. ++++|+|+|+++.+++.++++. +.+++.+|+
T Consensus 20 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~ 85 (261)
T 3ege_A 20 IRIVNAIINLLN---LPKGSVIADIGAGTGGYSVALAN------QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEETCTTSHHHHHHHT------TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCT
T ss_pred HHHHHHHHHHhC---CCCCCEEEEEcCcccHHHHHHHh------CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECch
Confidence 456677777664 25789999999999998877664 4679999999999998876643 448999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-------
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------- 177 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------- 177 (256)
.+. ++.+++||+|+++..+.+..+ ...+++++.++|| ||+++++.....
T Consensus 86 ~~~--~~~~~~fD~v~~~~~l~~~~~---------------------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~ 141 (261)
T 3ege_A 86 ENL--ALPDKSVDGVISILAIHHFSH---------------------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL 141 (261)
T ss_dssp TSC--CSCTTCBSEEEEESCGGGCSS---------------------HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG
T ss_pred hhC--CCCCCCEeEEEEcchHhhccC---------------------HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH
Confidence 774 344689999999876554422 5788999999999 998887765421
Q ss_pred ----------------CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 ----------------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 ----------------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+. .+++.||..+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 142 YDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 123455 88888997655543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=135.88 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=96.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
++.++.++..++.+.+.+++.+. ..++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+
T Consensus 133 ~~~~L~d~~~t~~~~~~il~~l~---~~~~~~VLDiGcGtG~la~~la~~-----~~~~V~gvD~s~-~l~~A~~~~~~~ 203 (480)
T 3b3j_A 133 QQNMMQDYVRTGTYQRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA-----GARKIYAVEAST-MAQHAEVLVKSN 203 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGG---GTTTCEEEEESCSTTHHHHHHHHT-----TCSEEEEEECHH-HHHHHHHHHHHT
T ss_pred chhhhcChHhHHHHHHHHHHhhh---hcCCCEEEEecCcccHHHHHHHHc-----CCCEEEEEEcHH-HHHHHHHHHHHc
Confidence 44566666667777777777653 246789999999999998877663 456999999998 999999999999
Q ss_pred CCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 94 NVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 94 ~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++. .+++.+|+.+... +++||+|+++++.++.... .....+..+.++|||||++++
T Consensus 204 gl~~~v~~~~~d~~~~~~---~~~fD~Ivs~~~~~~~~~e-------------------~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 204 NLTDRIVVIPGKVEEVSL---PEQVDIIISEPMGYMLFNE-------------------RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp TCTTTEEEEESCTTTCCC---SSCEEEEECCCCHHHHTCH-------------------HHHHHHHHGGGGEEEEEEEES
T ss_pred CCCCcEEEEECchhhCcc---CCCeEEEEEeCchHhcCcH-------------------HHHHHHHHHHHhcCCCCEEEE
Confidence 874 3899999987522 3689999999884321111 134566688999999999985
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=124.98 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=95.5
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.+|.|... .+.+...++..+ ++.+|||+|||+|.+++.+++. .++..|+++|+++.+++.+++|+..+
T Consensus 25 ~~F~np~~~~nr~l~~~~l~~~------~~~~VLDl~aGtG~~~l~~a~~----~~~~~V~avDi~~~av~~a~~N~~~n 94 (378)
T 2dul_A 25 PVFYNPRMALNRDIVVVLLNIL------NPKIVLDALSATGIRGIRFALE----TPAEEVWLNDISEDAYELMKRNVMLN 94 (378)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHH------CCSEEEESSCTTSHHHHHHHHH----SSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CceeCCchHHHHHHHHHHHHHc------CCCEEEECCCchhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 457777765 222322233332 5789999999999999999887 34568999999999999999999999
Q ss_pred ---------------CCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025180 94 ---------------NVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 94 ---------------~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
++. .+++++|+.+..... .++||+|+.|||+. ...+++
T Consensus 95 ~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~-~~~fD~I~lDP~~~-------------------------~~~~l~ 148 (378)
T 2dul_A 95 FDGELRESKGRAILKGEKTIVINHDDANRLMAER-HRYFHFIDLDPFGS-------------------------PMEFLD 148 (378)
T ss_dssp CCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS-TTCEEEEEECCSSC-------------------------CHHHHH
T ss_pred cccccccccccccccCCCceEEEcCcHHHHHHhc-cCCCCEEEeCCCCC-------------------------HHHHHH
Confidence 876 489999998875432 45799999998742 246788
Q ss_pred HHhhccccCeEEEEEE
Q 025180 158 SADKLLSKRGWLYLVT 173 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~ 173 (256)
.+.+.|++||+++++.
T Consensus 149 ~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 149 TALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEe
Confidence 8889999999888754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=122.62 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=95.6
Q ss_pred eeccCCccccCCch----HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025180 11 VSSHPEVYEPCDDS----FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 11 ~~~~~~~~~p~~~~----~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
+.+...+..|+.+. ++++...+.. ..++.+|||+|||+|.++.++++. .+..+|+++|+++.+++.|
T Consensus 86 l~ldg~~~~~~~de~~y~e~l~~~~l~~-----~~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDis~~~l~~a 156 (321)
T 2pt6_A 86 LVLDGVIQLTEKDEFAYHEMMTHVPMTV-----SKEPKNVLVVGGGDGGIIRELCKY----KSVENIDICEIDETVIEVS 156 (321)
T ss_dssp EEETTEEEEETTTHHHHHHHHHHHHHHH-----SSSCCEEEEEECTTCHHHHHHTTC----TTCCEEEEEESCHHHHHHH
T ss_pred EEECCEeeeCcccchHHHHHHHHHHHhc-----CCCCCEEEEEcCCccHHHHHHHHc----CCCCEEEEEECCHHHHHHH
Confidence 34566677888773 3333322211 135689999999999987766653 4567999999999999999
Q ss_pred HHHHHH--cCC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh
Q 025180 87 RKTLEA--HNV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK 161 (256)
Q Consensus 87 ~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (256)
++++.. +++ ..+++.+|+.+.... .+++||+|++|++-...+ ...+ ....+++.+.+
T Consensus 157 r~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fDvIi~d~~~p~~~---------~~~l--------~~~~~l~~~~~ 218 (321)
T 2pt6_A 157 KIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNTYDVIIVDSSDPIGP---------AETL--------FNQNFYEKIYN 218 (321)
T ss_dssp HHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSCEEEEEEECCCSSSG---------GGGG--------SSHHHHHHHHH
T ss_pred HHHHHhhccccCCCcEEEEEccHHHHHhh-cCCCceEEEECCcCCCCc---------chhh--------hHHHHHHHHHH
Confidence 999765 222 238999999876533 357899999987421100 0000 01688999999
Q ss_pred ccccCeEEEEEEe
Q 025180 162 LLSKRGWLYLVTL 174 (256)
Q Consensus 162 ~LkpgG~l~~~~~ 174 (256)
.|+|||++++...
T Consensus 219 ~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 219 ALKPNGYCVAQCE 231 (321)
T ss_dssp HEEEEEEEEEEEC
T ss_pred hcCCCcEEEEEcC
Confidence 9999999999654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=117.19 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=96.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.++.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|+.++++.+ .++++|+.+...... ..+||.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~---~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLK---NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCE
Confidence 5789999999999999999998753 34699999999999999999999999865 899999877643211 157999
Q ss_pred EEECCCCCCCCCcccccccchhhhc---CCCC---cHHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHHHHc
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWA---GGEN---GRAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~ 189 (256)
|++|||+.....-. +.++..|. ...+ -......++..+.++|+ ||++++++++... ...+...+.++
T Consensus 178 Vl~D~PcSg~G~~~---r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 178 ILLDPSCSGSGMPS---RQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQN 253 (309)
T ss_dssp EEECCCCCC---------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTS
T ss_pred EEEcCCcCCCCCCc---cCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhC
Confidence 99999986433211 11111110 0011 01234567888888887 9999998876542 23445555544
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-14 Score=108.11 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=93.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hh-hcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EK-RLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~-~~~~ 114 (256)
.++.+|||+|||+|.++..+++.+ .++.+++|+|+++ +++. ...+++.+|+.+.. .. ..++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~---~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQI---GGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHH---CTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHh---CCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCC
Confidence 477899999999999998888764 2457999999999 6543 12388888987652 11 3357
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+||+|++++|+........... ........++..+.++|+|||++++..........+...+... |...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~ 156 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIP----------RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKV 156 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHH----------HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEE
T ss_pred ceeEEEECCCccccCCCccchH----------HHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhE
Confidence 8999999999865443210000 0011236889999999999999999888777777777777765 5544
Q ss_pred E
Q 025180 195 I 195 (256)
Q Consensus 195 ~ 195 (256)
.
T Consensus 157 ~ 157 (180)
T 1ej0_A 157 K 157 (180)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=117.71 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=81.0
Q ss_pred CCCCEEEEecccccHHHH-HHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVIT-SLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~-~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++. .+++ .++++|+|+|+++++++.|++++...++.. +++++|+.+.. +++||+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~-----~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----d~~FDv 191 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSH-----VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----GLEFDV 191 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHH-----TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----GCCCSE
T ss_pred CCcCEEEEECCCccHHHHHHHHH-----ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----CCCcCE
Confidence 688999999999987653 3333 457899999999999999999999888743 99999998752 478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|++.-. .+ ....+++++.+.|||||++++..
T Consensus 192 V~~~a~---~~---------------------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL---AE---------------------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTT---CS---------------------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCC---cc---------------------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 998421 00 15789999999999999999865
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=134.49 Aligned_cols=173 Identities=16% Similarity=0.041 Sum_probs=107.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH--HHHHHH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT--RKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a--~~~~~~ 92 (256)
..+|+|+.....+++.+...+.. ...++.+|||+|||+|.++++++..+... ....++|+|+++.+++.| +.|+..
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~-~l~~g~rVLDPaCGSG~FLIaaA~~l~ei-~~~~IyGvEIDp~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGR-PLTEDEVISDPAAGSGNLLATVSAGFNNV-MPRQIWANDIETLFLELLSIRLGLLF 372 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCS-CCCTTCEEEETTCTTSHHHHHHHHTSTTC-CGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred ceEcCCHHHHHHHHHHHhhhccc-cCCCCCEEEECCCCccHHHHHHHHHhccc-CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 44788865555555542221211 01357899999999999999888765321 135899999999999999 666544
Q ss_pred c----CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc--------CCCCcHHHHHHHHHHH
Q 025180 93 H----NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA--------GGENGRAVIDKILPSA 159 (256)
Q Consensus 93 ~----~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~ 159 (256)
+ +... .+...|+.+.. .....+||+||+||||...............++. ......+....+++.+
T Consensus 373 N~LlhGi~~~~I~~dD~L~~~-~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A 451 (878)
T 3s1s_A 373 PQLVSSNNAPTITGEDVCSLN-PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV 451 (878)
T ss_dssp TTTCBTTBCCEEECCCGGGCC-GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred hhhhcCCCcceEEecchhccc-ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence 2 3333 55556665531 1224689999999999753332111111111110 0111223567889999
Q ss_pred hhccccCeEEEEEEeCCCC------HHHHHHHHHHcC
Q 025180 160 DKLLSKRGWLYLVTLTAND------PSQICLQMMEKG 190 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g 190 (256)
.++|++||++.++.+..-. ...+++.+.+..
T Consensus 452 l~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~ 488 (878)
T 3s1s_A 452 TELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNF 488 (878)
T ss_dssp HHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTT
T ss_pred HHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCC
Confidence 9999999999999885322 345666665543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=119.35 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=107.9
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++++...++.. +++.+|+.+... +.++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRR----HPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-FEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-GTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHh----CCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-cCCCCccEEE
Confidence 799999999999998888877 78889999999 889999999998888753 899999887641 1246799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
+...+++.++. ....+++.+.+.|+|||+++++....
T Consensus 254 ~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T 3mcz_A 254 LNDCLHYFDAR-------------------EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHG 314 (352)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTC
T ss_pred EecccccCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCC
Confidence 97655443321 25789999999999999999976311
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEec
Q 025180 177 --NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRD 214 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~ 214 (256)
....++.+++++.||+...... ....++.++|.
T Consensus 315 ~~~t~~e~~~ll~~aGf~~~~~~~-----g~~~l~~a~kp 349 (352)
T 3mcz_A 315 ELHPTPWIAGVVRDAGLAVGERSI-----GRYTLLIGQRS 349 (352)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEE-----TTEEEEEEECC
T ss_pred CcCCHHHHHHHHHHCCCceeeecc-----CceEEEEEecC
Confidence 1245778888999998766321 22455555553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=119.35 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-------------------------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------------------------- 95 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------------------------- 95 (256)
.++.+|||+|||+|.+++.++.. ++ ..|+|+|+++.+++.+++++...+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACE----SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGG----TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhc----cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 56789999999999976555443 33 4899999999999999988764431
Q ss_pred -----cc-eEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 96 -----HA-DLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 96 -----~~-~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
.. .++.+|+.+... +...++||+|+++..+...+. .......++..+.++|||||
T Consensus 130 ~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG 192 (265)
T 2i62_A 130 EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP-----------------DLPAYRTALRNLGSLLKPGG 192 (265)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC-----------------ChHHHHHHHHHHHhhCCCCc
Confidence 14 778888877532 112278999999654321110 12236788999999999999
Q ss_pred EEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEEe
Q 025180 168 WLYLVTLTA---------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 168 ~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++..... -..+++.+.+.+.||..+.+..
T Consensus 193 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 193 FLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 999865321 1355889999999998766553
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=115.99 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++. .+++.+|+.+...++.+++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN------GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT------TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCCccCEEE
Confidence 47899999999999987766553 369999999999999988754 278889987643344457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++..+.+.++ ...++..+.++|+|||++++..+..
T Consensus 99 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 99 FGDVLEHLFD---------------------PWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp EESCGGGSSC---------------------HHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred ECChhhhcCC---------------------HHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9766544332 4688999999999999999987653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=112.38 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=91.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++. . +|+|+++.+++.++++ ..+++.+|+.+. ++.+++||+|++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~---------~-~~vD~s~~~~~~a~~~------~~~~~~~d~~~~--~~~~~~fD~v~~ 108 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI---------K-IGVEPSERMAEIARKR------GVFVLKGTAENL--PLKDESFDFALM 108 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC---------C-EEEESCHHHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHH---------H-hccCCCHHHHHHHHhc------CCEEEEcccccC--CCCCCCeeEEEE
Confidence 378999999999997644321 1 9999999999999886 347888888764 234578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------C
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------------------D 178 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~ 178 (256)
+..+.+.++ ...+++.+.++|+|||++++..+... .
T Consensus 109 ~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 1vlm_A 109 VTTICFVDD---------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFS 167 (219)
T ss_dssp ESCGGGSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCC
T ss_pred cchHhhccC---------------------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCC
Confidence 766543322 46889999999999999999765321 3
Q ss_pred HHHHHHHHHHcCCcEEEEEecC
Q 025180 179 PSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
..++.+.+.+.||+...+....
T Consensus 168 ~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 168 TEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeccc
Confidence 5678889999999887665443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=116.33 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
-+.+.+.+...+ .++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.|++.+++++..+|...++...|
T Consensus 36 ld~fY~~~~~~l-----~~~~~VLDlGCG~GplAl~l~~~----~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d 106 (200)
T 3fzg_A 36 LNDFYTYVFGNI-----KHVSSILDFGCGFNPLALYQWNE----NEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLN 106 (200)
T ss_dssp HHHHHHHHHHHS-----CCCSEEEEETCTTHHHHHHHHCS----SCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEEC
T ss_pred HHHHHHHHHhhc-----CCCCeEEEecCCCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEec
Confidence 455566666665 36899999999999987666554 788999999999999999999999999886555577
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..... .+++||+|++.--++.. +..+..+..+.+.|+|||+++-
T Consensus 107 ~~~~~---~~~~~DvVLa~k~LHlL---------------------~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 107 KESDV---YKGTYDVVFLLKMLPVL---------------------KQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp CHHHH---TTSEEEEEEEETCHHHH---------------------HHTTCCHHHHHHTCEEEEEEEE
T ss_pred ccccC---CCCCcChhhHhhHHHhh---------------------hhhHHHHHHHHHHhCCCCEEEE
Confidence 65542 35789999995433211 0112335578899999999886
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-14 Score=115.70 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=85.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc--C--CC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL--A--GL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~--~--~~ 115 (256)
++.+|||+|||+|..++.++..+. ++++++++|+++.+++.|++++...++.. +++.+|+.+.+.... + ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLP---PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence 578999999999999888887632 26799999999999999999999888753 899999877654432 2 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 149 fD~V~~d~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 149 FDLIFIDADK------------------------RNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEEECSCG------------------------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred cCEEEECCCH------------------------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9999997541 115688999999999999999843
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=128.29 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=84.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. + ..+|+|+|++ .+++.|++++..+++.. +++++|+.+...+ ++||+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 132 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDV 132 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT----T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---SCEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhc----C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---CcceE
Confidence 57899999999999998888775 2 2389999999 99999999999998864 8999999876432 78999
Q ss_pred EEECCC-CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 119 MVVNPP-YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|++++. |+..... ....++..+.++|||||++++.
T Consensus 133 Iv~~~~~~~l~~e~-------------------~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 133 IISEWMGYFLLRES-------------------MFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EEECCCBTTBTTTC-------------------THHHHHHHHHHHEEEEEEEESS
T ss_pred EEEcChhhcccchH-------------------HHHHHHHHHHhhCCCCeEEEEe
Confidence 999873 3322111 1577899999999999999763
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=122.09 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=77.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-------ceEEEcchh------hch
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-------ADLINTDIA------SGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-------~~~~~~d~~------~~~ 108 (256)
++.+|||+|||+|..+..++.. ..++|+|+|+|+.|++.|+++....+.. .++.+.|+. +..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-----EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh
Confidence 4789999999999754433332 2468999999999999999988765542 256677762 211
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+.+++||+|+|...++...+. . . ...+++++.++|||||++++.++.
T Consensus 123 ~~~~~~~FD~V~~~~~lhy~~~~--------------~-~---~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 123 EVFYFGKFNIIDWQFAIHYSFHP--------------R-H---YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp TTCCSSCEEEEEEESCGGGTCST--------------T-T---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCCCeeEEEECchHHHhCCH--------------H-H---HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 12335789999996443211110 0 0 468899999999999999987763
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-14 Score=121.48 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=82.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++. .+++.+|+.+. ++.+++||+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~ 134 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-----GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HLPVEKVDV 134 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CCSCSCEEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-----CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cCCCCcEEE
Confidence 57889999999999998877764 234899999997 999999999999873 38999999875 233478999
Q ss_pred EEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 119 MVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++++ +|..... .....++..+.++|||||+++
T Consensus 135 Ivs~~~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFE-------------------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTT-------------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCH-------------------HHHHHHHHHHHhhcCCCcEEE
Confidence 99987 4432211 125678999999999999998
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=115.58 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=92.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH----HHcCCcc-eEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL----EAHNVHA-DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~----~~~~~~~-~~~~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..++.. +|+++|+|+|+++.|++.+.++. ...+.+. .++++|+.+. ++.++.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l--~~~~~~ 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQ----NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL--PPLSGV 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHH----CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC--CSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC--CCCCCC
Confidence 57899999999999999888887 77889999999999888643333 2345544 8999999885 233455
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C---
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D--- 178 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~--- 178 (256)
|.|+...++... ...+... ...++.++.++|||||++++...... .
T Consensus 100 -d~v~~~~~~~~~----------~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (218)
T 3mq2_A 100 -GELHVLMPWGSL----------LRGVLGS------SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDS 162 (218)
T ss_dssp -EEEEEESCCHHH----------HHHHHTS------SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHH
T ss_pred -CEEEEEccchhh----------hhhhhcc------HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHH
Confidence 888766554210 0001100 15789999999999999998542110 1
Q ss_pred -HHHHHHHHHHcCCcEEEEE
Q 025180 179 -PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 179 -~~~~~~~~~~~g~~~~~~~ 197 (256)
.+.+...+.+.||....+.
T Consensus 163 ~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 163 ADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceeee
Confidence 1246678888898865543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=115.91 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=85.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--hc-CCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--RL-AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~~fD 117 (256)
.++.+|||+|||+|.++..++.. ++ +|+|+|+++.+++.++++.. ....+++++|+.+.... +. ...||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~----~~--~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQF----FP--RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHH----SS--CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHh----CC--CEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCcc
Confidence 46789999999999999888886 33 89999999999999998762 22348999998875322 11 13499
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+|+++..+++.+... ...++..+.++|||||+++++.....
T Consensus 127 ~v~~~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEK-------------------RELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEEEESSSTTSCGGG-------------------HHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEEEcchhhcCCHHH-------------------HHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999987776654322 57899999999999999988776544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=118.63 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cCC---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HNV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|.++.++++. .+..+|+++|+++.+++.|++++.. .++ ..+++.+|+.+.+.. .+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~ 168 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH----PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDA 168 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCC
Confidence 35689999999999987766554 4567999999999999999999865 233 348999999876543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+|++++|....+.. ......+++.+.++|+|||++++..
T Consensus 169 fD~Ii~d~~~~~~~~~-----------------~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 169 FDVIITDSSDPMGPAE-----------------SLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEEECC----------------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEECCCCCCCcch-----------------hhhHHHHHHHHHhccCCCeEEEEec
Confidence 9999998874321110 0113578999999999999999865
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=118.76 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=105.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++++...++. .+++.+|+.+.. +++||+|++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~D~v~~ 239 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQA----EPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV----PSNGDIYLL 239 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC----CSSCSEEEE
T ss_pred CEEEEeCCCchHHHHHHHHH----CCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC----CCCCCEEEE
Confidence 89999999999998888776 77889999999 99999999998766543 489999987732 357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------C
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------N 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------~ 177 (256)
.-.+++.++. ....+++.+.+.|+|||++++..... .
T Consensus 240 ~~vl~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (334)
T 2ip2_A 240 SRIIGDLDEA-------------------ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHR 300 (334)
T ss_dssp ESCGGGCCHH-------------------HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCC
T ss_pred chhccCCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCC
Confidence 7665433321 24688999999999999999975321 1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 178 DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
..+++.+++++.||....+..... ...++++.+
T Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~---~~~~i~~~~ 333 (334)
T 2ip2_A 301 TTEEVVDLLGRGGFAVERIVDLPM---ETRMIVAAR 333 (334)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEETT---TEEEEEEEE
T ss_pred CHHHHHHHHHHCCCceeEEEECCC---CCEEEEEEe
Confidence 245678888889998777665422 245555543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=114.21 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++... .++.+|+++|+++.+++.+++++...+... .++.+|
T Consensus 63 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 136 (215)
T 2yxe_A 63 IHMVGMMCELLD---LKPGMKVLEIGTGCGYHAAVTAEIV---GEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD 136 (215)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred HHHHHHHHHhhC---CCCCCEEEEECCCccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 445556665543 2578899999999999999888874 244699999999999999999998887654 888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+...... .++||+|+++.++.+. .+.+.++|||||+++++...
T Consensus 137 ~~~~~~~--~~~fD~v~~~~~~~~~---------------------------~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 137 GTLGYEP--LAPYDRIYTTAAGPKI---------------------------PEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGGCCGG--GCCEEEEEESSBBSSC---------------------------CHHHHHTEEEEEEEEEEESS
T ss_pred cccCCCC--CCCeeEEEECCchHHH---------------------------HHHHHHHcCCCcEEEEEECC
Confidence 8654332 4689999998765321 24678899999999997653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-14 Score=117.23 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=83.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
.++++|||+|||+|..+.++++. .+..+++++|+++.+++.|++++...+ ...+++.+|+.+.... .+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~ 151 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKY----KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNT 151 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-CCCC
Confidence 35689999999999987666543 456799999999999999999876432 2238999999886543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+... + ....+++.+.++|+|||++++...
T Consensus 152 fD~Ii~d~~~~~~~~~~---------l--------~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 152 YDVIIVDSSDPIGPAET---------L--------FNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEEEECCCTTTGGGG---------G--------SSHHHHHHHHHHEEEEEEEEEECC
T ss_pred ceEEEEcCCCCCCcchh---------h--------hHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999987532111100 0 026889999999999999998654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-14 Score=127.25 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=119.5
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC---------CceEEEEeCCHHHHHH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP---------GVQYIATDINPYAVEV 85 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~---------~~~v~giD~~~~~i~~ 85 (256)
..+|+|++...++++.+. +.++.+|+|++||||.+++.+...+.+... ...++|+|+++.++..
T Consensus 197 GqfyTP~~Vv~lmv~l~~-------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~l 269 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMD-------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLL 269 (530)
T ss_dssp CCCCCCHHHHHHHHHHHC-------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHH
T ss_pred ceECCcHHHHHHHHHhhc-------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHH
Confidence 348999766666665432 246789999999999999998887754332 2479999999999999
Q ss_pred HHHHHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025180 86 TRKTLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 86 a~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
|+-|+..++... .+..+|....... ....+||+|++||||............+. .....+ ....+++.+.+.
T Consensus 270 a~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~--~~~~~~---~~~~Fl~~~l~~ 344 (530)
T 3ufb_A 270 VQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPE--DMQTAE---TAMLFLQLIMRK 344 (530)
T ss_dssp HHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCG--GGCCCB---HHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCch--hcccch---hHHHHHHHHHHH
Confidence 999999999875 7888887653211 12357999999999975433221110000 011111 123456666666
Q ss_pred cc-------cCeEEEEEEeCC----C-CHHHHHHHHHHcCCcE-EEEEec-CC---CCccEEEEEEEecC
Q 025180 163 LS-------KRGWLYLVTLTA----N-DPSQICLQMMEKGYAA-RIVVQR-ST---EEENLHIIKFWRDF 215 (256)
Q Consensus 163 Lk-------pgG~l~~~~~~~----~-~~~~~~~~~~~~g~~~-~~~~~~-~~---~~~~~~l~~~~~~~ 215 (256)
|| +||++.++.|.. . ....+++.+.+.+.-. +.-.+. .. ..-...++.+.|..
T Consensus 345 Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~ 414 (530)
T 3ufb_A 345 LKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRSG 414 (530)
T ss_dssp BCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESSS
T ss_pred hhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECCC
Confidence 65 799999998742 1 2345777776654322 222222 11 12345566666544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=114.38 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=85.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL------ 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~------ 112 (256)
.++.+|||+|||+|..+..++..+. ++.+|+++|+++.+++.|++++...++.. .++.+|+.+..+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALP---EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 3678999999999999998888732 25799999999999999999999888753 889999877544321
Q ss_pred --------C-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 --------A-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 --------~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+ ++||+|+++... .....+++.+.++|+|||++++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~------------------------~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADK------------------------ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCG------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeCCH------------------------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 689999997421 115678999999999999999854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=119.40 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
.+.+.+...+. ..++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++. .+++.+|
T Consensus 37 ~y~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d 107 (348)
T 2y1w_A 37 TYQRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA-----GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK 107 (348)
T ss_dssp HHHHHHHHTGG---GTTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHhccc---cCCcCEEEEcCCCccHHHHHHHhC-----CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcc
Confidence 33444444432 257899999999999998877764 345999999996 889999999998874 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+... +++||+|++++++.+..... ....+..+.++|||||++++.
T Consensus 108 ~~~~~~---~~~~D~Ivs~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 108 VEEVSL---PEQVDIIISEPMGYMLFNER-------------------MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTTCCC---SSCEEEEEECCCBTTBTTTS-------------------HHHHHHHGGGGEEEEEEEESC
T ss_pred hhhCCC---CCceeEEEEeCchhcCChHH-------------------HHHHHHHHHhhcCCCeEEEEe
Confidence 887532 36899999998765433221 456677889999999999853
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-13 Score=111.65 Aligned_cols=133 Identities=19% Similarity=0.199 Sum_probs=93.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~f 116 (256)
.+++|||+|||+|.++.++++. .+..+|+++|+++.+++.|++++... ++ ..+++.+|+.+.+.. .+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~f 149 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKH----PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQY 149 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTC----TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCE
T ss_pred CCCEEEEECCchHHHHHHHHhC----CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCCe
Confidence 5789999999999987666543 45579999999999999999987642 33 238999999876543 35789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCH---HHHHHHHHHcCCc
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDP---SQICLQMMEKGYA 192 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~---~~~~~~~~~~g~~ 192 (256)
|+|++++|....+... + ....+++.+.+.|+|||++++...+. ... ..+.+.+++. |.
T Consensus 150 D~Ii~d~~~~~~~~~~---------l--------~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~ 211 (275)
T 1iy9_A 150 DVIMVDSTEPVGPAVN---------L--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FP 211 (275)
T ss_dssp EEEEESCSSCCSCCCC---------C--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CS
T ss_pred eEEEECCCCCCCcchh---------h--------hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CC
Confidence 9999998763221100 0 02478899999999999999864332 122 2344455544 55
Q ss_pred EEEEE
Q 025180 193 ARIVV 197 (256)
Q Consensus 193 ~~~~~ 197 (256)
....+
T Consensus 212 ~v~~~ 216 (275)
T 1iy9_A 212 ITKLY 216 (275)
T ss_dssp EEEEE
T ss_pred CeEEE
Confidence 54444
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=121.27 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+.+.+++.+. ..++.+|||+|||+|.+++.+++... .+.+|+|+|+++++++.|++++..+++.. +++.+|+
T Consensus 62 ~~~~~l~~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~ 135 (317)
T 1dl5_A 62 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 (317)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCCchHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh
Confidence 55566666553 25789999999999999998888732 13679999999999999999999888765 8999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+.... .++||+|++++++.+. .+.+.+.|||||++++...
T Consensus 136 ~~~~~~--~~~fD~Iv~~~~~~~~---------------------------~~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 136 YYGVPE--FSPYDVIFVTVGVDEV---------------------------PETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCGG--GCCEEEEEECSBBSCC---------------------------CHHHHHHEEEEEEEEEEBC
T ss_pred hhcccc--CCCeEEEEEcCCHHHH---------------------------HHHHHHhcCCCcEEEEEEC
Confidence 875432 4689999998876421 1456779999999999653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=118.14 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.+++++ .... ...++.+|+.+. ++.+++||+|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~--~~~~~~fD~v 108 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI--PLPDESVHGV 108 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC--CSCTTCEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC--CCCCCCeeEE
Confidence 46789999999999988776654 468999999999999999987 3222 348999998765 2345789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++..+++.++ ...++.++.++|+|||++++..
T Consensus 109 ~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 109 IVVHLWHLVPD---------------------WPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp EEESCGGGCTT---------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCchhhcCC---------------------HHHHHHHHHHHCCCCcEEEEEe
Confidence 99766554332 4688999999999999999863
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=117.94 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~f 116 (256)
.+.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... ++ ..+++.+|+.+.+.. .+++|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~f 182 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKH----ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEF 182 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTC----TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCE
T ss_pred CCCEEEEEcCCcCHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCc
Confidence 5689999999999987766654 45679999999999999999988653 22 348999999886543 35789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+++++....+.. . .....+++.+.++|+|||++++..
T Consensus 183 D~Ii~d~~~~~~~~~----------------~-l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 183 DVIITDSSDPVGPAE----------------S-LFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEEECCC------------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred eEEEEcCCCCCCcch----------------h-hhHHHHHHHHHhhcCCCeEEEEEC
Confidence 999998753211000 0 012688999999999999999854
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=114.61 Aligned_cols=112 Identities=24% Similarity=0.202 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. . .+|+|+|+++.+++.+++++..++ ..+++.+|+
T Consensus 56 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~ 125 (231)
T 1vbf_A 56 LNLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEI----V--DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDG 125 (231)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH----S--SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCG
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHH----c--CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCc
Confidence 455666666653 257789999999999999888876 2 589999999999999999987766 558999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+... ..++||+|+++.++.+. ...+.++|+|||++++..+.
T Consensus 126 ~~~~~--~~~~fD~v~~~~~~~~~---------------------------~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 126 TLGYE--EEKPYDRVVVWATAPTL---------------------------LCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCG--GGCCEEEEEESSBBSSC---------------------------CHHHHHTEEEEEEEEEEECS
T ss_pred ccccc--cCCCccEEEECCcHHHH---------------------------HHHHHHHcCCCcEEEEEEcC
Confidence 87432 24789999998765321 23577899999999997653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-14 Score=121.11 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=84.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++.. +++++|+.+. ++..++||+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-----g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 136 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-----GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVDI 136 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-----TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CCSSSCEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-----CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc--cCCCCceEE
Confidence 47899999999999998887775 345999999995 9999999999998874 8999999887 333578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|+++++.+..... .....++..+.++|||||+++.
T Consensus 137 Iis~~~~~~l~~~------------------~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 137 IISEWMGYCLFYE------------------SMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEECCCBBTBTBT------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEccccccccCc------------------hhHHHHHHHHHHhCCCCCEEcc
Confidence 9998753322111 1157889999999999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=109.99 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. ++ +++|+|+++.+++.++++.. ..+++.+|+.+.. . +++||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~----~~--~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~--~-~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKE----FG--DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR--L-GRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHH----HS--EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC--C-SSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHh----CC--cEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHcc--c-CCCCcEEE
Confidence 46789999999999998888876 22 89999999999999988641 2488999987753 2 57899999
Q ss_pred ECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|.. .+.+... ......+++.+.++|+|||++++..
T Consensus 106 ~~~~~~~~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 106 SMFSSVGYLKT------------------TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp ECTTGGGGCCS------------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EcCchHhhcCC------------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 632 3222211 1235788999999999999999853
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=110.65 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.++..+ +. +++|+|+++.+++.++++. ....++++|+.+. ++.+++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---------~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---------PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEAL--PFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---------CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSC--CSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---------CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccC--CCCCCcEEEEE
Confidence 7899999999999975443 34 8999999999999998875 2347888888765 33457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
++..+.+.++ ...+++++.++|||||++++..+....
T Consensus 101 ~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 101 LFTTLEFVED---------------------VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EESCTTTCSC---------------------HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EcChhhhcCC---------------------HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 9877655432 468899999999999999998875543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=115.83 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cCC---cceEEEcchhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HNV---HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~~---~~~~~~~d~~~~~~~~~~~~f 116 (256)
.+.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.. .++ ..+++.+|+.+.... .+++|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~f 164 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKH----DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNEF 164 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTS----TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSCE
T ss_pred CCCEEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-CCCCc
Confidence 5689999999999987766654 4567999999999999999999764 222 348999998876543 35789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCH---HHHHHHHHHcCCc
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDP---SQICLQMMEKGYA 192 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~---~~~~~~~~~~g~~ 192 (256)
|+|++|+|........ . .....+++.+.++|+|||++++...+. ... ..+.+.+.+. |.
T Consensus 165 D~Ii~d~~~~~~~~~~--------~--------l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~ 227 (296)
T 1inl_A 165 DVIIIDSTDPTAGQGG--------H--------LFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FP 227 (296)
T ss_dssp EEEEEEC--------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CS
T ss_pred eEEEEcCCCcccCchh--------h--------hhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CC
Confidence 9999987632010000 0 013678999999999999999965432 112 2445555555 44
Q ss_pred EEE
Q 025180 193 ARI 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 228 ~v~ 230 (296)
T 1inl_A 228 ITR 230 (296)
T ss_dssp EEE
T ss_pred ceE
Confidence 433
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-14 Score=113.81 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=83.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc-ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-ceEEEcchhhchhh--h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLG-QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH-ADLINTDIASGLEK--R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~-~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~-~~~~~~d~~~~~~~--~ 111 (256)
.++.+|||+|||+|.++..+++.+. ...+.++|+++|+++.+++.|++++..++ .. .+++.+|+.+.... .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 4779999999999999988888742 01145799999999999999999998887 33 38999998875310 1
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..++||+|+++.++. .+++.+.+.|+|||++++..+.
T Consensus 159 ~~~~fD~I~~~~~~~---------------------------~~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS---------------------------ELPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHCCEEEEEECSBBS---------------------------SCCHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH---------------------------HHHHHHHHhcCCCcEEEEEEcc
Confidence 246899999987642 2356778899999999997653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=114.70 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..++..+++.+. ..++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.|++++...++.. .++.+|
T Consensus 77 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~~----~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 148 (235)
T 1jg1_A 77 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIV----K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 148 (235)
T ss_dssp HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHH----C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHh----C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 445566666553 2577899999999999999888873 3 589999999999999999999888754 888999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+...... ...||+|+++.+... +...+.+.|+|||++++..+..
T Consensus 149 ~~~~~~~--~~~fD~Ii~~~~~~~---------------------------~~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 149 GSKGFPP--KAPYDVIIVTAGAPK---------------------------IPEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGGCCGG--GCCEEEEEECSBBSS---------------------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred cccCCCC--CCCccEEEECCcHHH---------------------------HHHHHHHhcCCCcEEEEEEecC
Confidence 7433322 245999999865421 1235678999999999976543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=122.74 Aligned_cols=126 Identities=15% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--e-EEEcchhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--D-LINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~-~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++.|+++ +... . +...+.... ++.+++||
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l--~~~~~~fD 173 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDV--RRTEGPAN 173 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHH--HHHHCCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhc--ccCCCCEE
Confidence 56789999999999988777664 45999999999999998875 3332 2 222233222 23357999
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-------------------CCC
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-------------------AND 178 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------~~~ 178 (256)
+|+++..+.+.++ ...+++.+.++|||||++++..+. ...
T Consensus 174 ~I~~~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 174 VIYAANTLCHIPY---------------------VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp EEEEESCGGGCTT---------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred EEEECChHHhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 9999876654432 578999999999999999997653 113
Q ss_pred HHHHHHHHHHcCCcEEEEEec
Q 025180 179 PSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~~ 199 (256)
..++...+.+.||....+...
T Consensus 233 ~~~l~~ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDVQRL 253 (416)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEEc
Confidence 468899999999988766654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=113.83 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC------cceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV------HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~ 114 (256)
.++.+|||+|||+|.++..+++.++ +..+|+++|+++.+++.+++++..++. ...++.+|+..... ..+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 150 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA--EEA 150 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG--GGC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc--cCC
Confidence 5788999999999999988887752 446999999999999999999988664 34888999875432 246
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+||+|+++.++. .+++.+.+.|||||++++...+
T Consensus 151 ~fD~i~~~~~~~---------------------------~~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 151 PYDAIHVGAAAP---------------------------VVPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CEEEEEECSBBS---------------------------SCCHHHHHTEEEEEEEEEEESC
T ss_pred CcCEEEECCchH---------------------------HHHHHHHHhcCCCcEEEEEEec
Confidence 899999987642 2346778899999999997653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=117.23 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +..+|+|+|++ .+++.|++++..+++.. +++.+|+.+.. ...++||+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 108 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-----GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDI 108 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-----CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHC-----CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--CCCCcccE
Confidence 46789999999999998877764 23489999999 59999999999998753 89999988763 22478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|+++++.+..... .....++..+.++|||||+++
T Consensus 109 Ivs~~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 109 IISEWMGYFLLYE------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeCchhhcccH------------------HHHHHHHHHHHhhcCCCeEEE
Confidence 9999874332111 015678899999999999997
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-13 Score=112.62 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=83.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH--cC----CcceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA--HN----VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~--~~----~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.. .+ ...+++.+|+.+.+.. .++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 150 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKH----PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEE 150 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-cCC
Confidence 35689999999999987666553 4567999999999999999998764 12 2348999999886543 357
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++++....... +.. ......+++.+.++|+|||++++..
T Consensus 151 ~fD~Ii~d~~~~~~~~~------~~~--------~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 151 RYDVVIIDLTDPVGEDN------PAR--------LLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CEEEEEEECCCCBSTTC------GGG--------GGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCCCcccccC------cch--------hccHHHHHHHHHHhcCCCcEEEEEc
Confidence 89999999765320000 000 0013688999999999999999864
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=120.16 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH-------HHHHHHcCC--
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT-------RKTLEAHNV-- 95 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a-------~~~~~~~~~-- 95 (256)
..++..+++.+. ..++.+|||+|||+|.+++.+++.. +...|+|+|+++.+++.| ++++..+++
T Consensus 228 p~~v~~ml~~l~---l~~g~~VLDLGCGsG~la~~LA~~~----g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~ 300 (433)
T 1u2z_A 228 PNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALEC----GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL 300 (433)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHH----CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC
Confidence 344455555543 2578999999999999999988873 345899999999999998 888888883
Q ss_pred cc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 96 HA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.. +++++|......+ ...++||+|++|...+. .....++..+.+.|||||++++.
T Consensus 301 ~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~----------------------~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 301 NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD----------------------EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCC----------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CceEEEEcCccccccccccccCCCCEEEEeCcccc----------------------ccHHHHHHHHHHhCCCCeEEEEe
Confidence 33 7777754321101 11368999999754321 12457788999999999999985
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=117.77 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=94.4
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHH
Q 025180 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..+|.|... .+.++..++..+... ..++.+|||++||+|.+++.++..+ .+ ..|+++|+++.+++.+++|++.
T Consensus 25 ~~Ffn~~~~~nR~l~~~~~~~~~~~-~~~g~~VLDlfaGtG~~sl~aa~~~----~ga~~V~avDi~~~av~~~~~N~~~ 99 (392)
T 3axs_A 25 PVFYNPRMRVNRDLAVLGLEYLCKK-LGRPVKVADPLSASGIRAIRFLLET----SCVEKAYANDISSKAIEIMKENFKL 99 (392)
T ss_dssp CSSCCGGGHHHHHHHHHHHHHHHHH-HCSCEEEEESSCTTSHHHHHHHHHC----SCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHHHHhhc-cCCCCEEEECCCcccHHHHHHHHhC----CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 346656544 333333223322100 1367899999999999999998863 23 4899999999999999999999
Q ss_pred cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 93 HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 93 ~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|++. .+++++|+.+.+. .. .++||+|++|| |.. ...++..+.++|++||+
T Consensus 100 Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V~lDP-~g~------------------------~~~~l~~a~~~Lk~gGl 153 (392)
T 3axs_A 100 NNIPEDRYEIHGMEANFFLRKEW-GFGFDYVDLDP-FGT------------------------PVPFIESVALSMKRGGI 153 (392)
T ss_dssp TTCCGGGEEEECSCHHHHHHSCC-SSCEEEEEECC-SSC------------------------CHHHHHHHHHHEEEEEE
T ss_pred hCCCCceEEEEeCCHHHHHHHhh-CCCCcEEEECC-CcC------------------------HHHHHHHHHHHhCCCCE
Confidence 9985 5899999988765 43 46799999998 310 24578888889999998
Q ss_pred EEEEE
Q 025180 169 LYLVT 173 (256)
Q Consensus 169 l~~~~ 173 (256)
+++++
T Consensus 154 l~~t~ 158 (392)
T 3axs_A 154 LSLTA 158 (392)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88855
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=113.37 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC----------cceEEEcchhhch
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV----------HADLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~----------~~~~~~~d~~~~~ 108 (256)
..+.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++ .. ++ ..+++.+|+.+.+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-----~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-----DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-----CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh
Confidence 35789999999999987655543 4569999999999999999988 33 22 2389999988765
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. +++||+|++++|....+... .....+++.+.++|+|||++++...
T Consensus 148 ~~--~~~fD~Ii~d~~~~~~~~~~-----------------l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 148 KN--NRGFDVIIADSTDPVGPAKV-----------------LFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp HH--CCCEEEEEEECCCCC----------------------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cCCeeEEEECCCCCCCcchh-----------------hhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 44 57899999998753211000 0126789999999999999998654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=104.23 Aligned_cols=128 Identities=9% Similarity=0.096 Sum_probs=84.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC--CceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhch---------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP--GVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGL--------- 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~--~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~--------- 108 (256)
.++.+|||+|||+|.++..+++. .+ +++|+|+|+++.+ .. ...++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~----~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILER----TKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHH----TTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCEEEEeCCCCCHHHHHHHHH----cCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccc
Confidence 46789999999999999888887 44 5799999999831 11 2378888887653
Q ss_pred --------------hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 109 --------------EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 109 --------------~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+.+++||+|+++++++...... .+.. ........++..+.++|||||++++...
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~---~d~~-------~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI---DDHL-------NSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHH---HHHH-------HHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcc---cCHH-------HHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 012346899999997654321100 0000 0011234578899999999999998666
Q ss_pred CCCCHHHHHHHHHHcCCcEE
Q 025180 175 TANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~ 194 (256)
......++...+.. .|...
T Consensus 156 ~~~~~~~l~~~l~~-~f~~v 174 (201)
T 2plw_A 156 LGSQTNNLKTYLKG-MFQLV 174 (201)
T ss_dssp CSTTHHHHHHHHHT-TEEEE
T ss_pred CCCCHHHHHHHHHH-HHheE
Confidence 55555666666654 35443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=127.02 Aligned_cols=122 Identities=23% Similarity=0.171 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCHHHHHHHHHHHHHc------CCc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINPYAVEVTRKTLEAH------NVH 96 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~-~~~~v~giD~~~~~i~~a~~~~~~~------~~~ 96 (256)
....++++++.+.. .++.+|||+|||+|.+++.+++. + +..+|+|+|+++.+++.|++++... +..
T Consensus 706 ~eqRle~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~----g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 706 SKQRVEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDY----PTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHHHHHH---SCCSEEEEETCSSSHHHHHHTSS----CCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHHHHHhcc---cCCCEEEEECCCCCHHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 45556666666542 47899999999999987666554 4 4469999999999999999977642 333
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+++++|+.+.. ...++||+|+++..+.+.++. ....+++.+.++|||| .+++.++
T Consensus 779 nVefiqGDa~dLp--~~d~sFDlVV~~eVLeHL~dp-------------------~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 779 SATLYDGSILEFD--SRLHDVDIGTCLEVIEHMEED-------------------QACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEEEESCTTSCC--TTSCSCCEEEEESCGGGSCHH-------------------HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ceEEEECchHhCC--cccCCeeEEEEeCchhhCChH-------------------HHHHHHHHHHHHcCCC-EEEEEec
Confidence 389999998763 345789999997666544332 1457899999999999 7777654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=114.22 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=84.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~fD~I 119 (256)
++.+|||+|||+|..++.+++.+...+++++|+|+|+++.+++.|+. .....+++++|+.+. ++.....+||+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 46899999999999999888863222467899999999999988761 122348999998874 222223479999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh-ccccCeEEEEEEe----CCCCHHHHHHHHHHc
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK-LLSKRGWLYLVTL----TANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~----~~~~~~~~~~~~~~~ 189 (256)
+++.... ....++..+.+ +|||||++++... .......+.+++++.
T Consensus 157 ~~d~~~~------------------------~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 157 FIDNAHA------------------------NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp EEESSCS------------------------SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred EECCchH------------------------hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 9865410 14678899996 9999999998431 011223556666655
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=114.72 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++.. . .++.+|+.+.. +.+++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~----~-~~~~~d~~~~~--~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV----K-NVVEAKAEDLP--FPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC----S-CEEECCTTSCC--SCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcC----C-CEEECcHHHCC--CCCCCEEEEEE
Confidence 6789999999999988766654 4589999999999999988753 1 38888887652 34578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
..+..+... ....+++++.++|||||++++..++
T Consensus 121 ~~~~~~~~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 121 LGDVLSYVE--------------------NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CSSHHHHCS--------------------CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cchhhhccc--------------------cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 643321110 0468899999999999999997764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=109.28 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCEEEEecccc---cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------
Q 025180 42 HPVLCMEVGCGS---GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--------- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~---G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--------- 109 (256)
...+|||+|||+ |.++..+... .|+++|+++|+|+.|++.|++++... -..+++.+|+.+...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~----~p~~~v~~vD~sp~~l~~Ar~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV----NPDARVVYVDIDPMVLTHGRALLAKD-PNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH----CTTCEEEEEESSHHHHHHHHHHHTTC-TTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh----CCCCEEEEEECChHHHHHHHHhcCCC-CCeEEEEeeCCCchhhhccchhhc
Confidence 458999999999 9875444443 67889999999999999999987432 234899999876421
Q ss_pred hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 110 KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.+...+||+|+++..+++.++.+ ...+++++.+.|+|||++++......
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~~-------------------~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPDV-------------------VDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTTT-------------------HHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred cCCCCCCEEEEEechhhhCCcHH-------------------HHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 11125899999987766544422 57899999999999999999876553
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=115.93 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=87.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------C-cceEEEcchhhchh--hh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------V-HADLINTDIASGLE--KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~-~~~~~~~d~~~~~~--~~ 111 (256)
++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|+++....+ . ...++++|+.+... ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 108 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-----RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF 108 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc
Confidence 6789999999999987766652 35699999999999999999887542 2 34899999887531 12
Q ss_pred --cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025180 112 --LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+++||+|+++..++.... .......++.++.++|||||++++.++.. .++...+.
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~l~~~~~ 166 (313)
T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFE-----------------SYEQADMMLRNACERLSPGGYFIGTTPNS---FELIRRLE 166 (313)
T ss_dssp SSTTCCEEEEEEETCGGGGGG-----------------SHHHHHHHHHHHHTTEEEEEEEEEEEECH---HHHHHHHT
T ss_pred ccCCCCEEEEEEecchhhccC-----------------CHHHHHHHHHHHHHHhCCCcEEEEecCCh---HHHHHHHH
Confidence 2358999999765432200 11235689999999999999999977643 34444443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-13 Score=106.71 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=92.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+ ..+++|+|+++. ...++.+|+.+. ++.+++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---------~~~v~~~D~s~~--------------~~~~~~~d~~~~--~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---------RNPVHCFDLASL--------------DPRVTVCDMAQV--PLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---------CSCEEEEESSCS--------------STTEEESCTTSC--SCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHh---------hccEEEEeCCCC--------------CceEEEeccccC--CCCCCCEeEEE
Confidence 46789999999999975433 148999999987 237888898774 33457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--CCHHHHHHHHHHcCCcEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++..++. .+ ...++..+.++|+|||+++++.... ....++.+.+.+.||.......
T Consensus 121 ~~~~l~~-~~---------------------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 121 FCLSLMG-TN---------------------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp EESCCCS-SC---------------------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred Eehhccc-cC---------------------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec
Confidence 9877642 11 5688999999999999999976543 3567899999999998765432
Q ss_pred cCCCCccEEEEEEEecCc
Q 025180 199 RSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~ 216 (256)
. ...+.++.++|...
T Consensus 179 ~---~~~~~~~~~~k~~~ 193 (215)
T 2zfu_A 179 T---NSHFFLFDFQKTGP 193 (215)
T ss_dssp C---STTCEEEEEEECSS
T ss_pred C---CCeEEEEEEEecCc
Confidence 2 23345566666543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=112.76 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=107.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
....+|+|+|||+|.+++.+++. +|+.+++..|. |.+++.|++++...+.+ .+++.+|+.+... ..+|++
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~----~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~----~~~D~~ 248 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSL----YPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL----PEADLY 248 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHH----CSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC----CCCSEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHh----CCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC----CCceEE
Confidence 35689999999999998888887 89999999997 88999999887654433 3899999876522 357999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
++.-.++..+++ ....+|+++.+.|+|||+++++....
T Consensus 249 ~~~~vlh~~~d~-------------------~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g 309 (353)
T 4a6d_A 249 ILARVLHDWADG-------------------KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG 309 (353)
T ss_dssp EEESSGGGSCHH-------------------HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC
T ss_pred EeeeecccCCHH-------------------HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 996554433332 24688999999999999999977421
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecCc
Q 025180 177 --NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDFD 216 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (256)
+...+..+++++.||+...+.+... ...++.++|+-.
T Consensus 310 ~ert~~e~~~ll~~AGf~~v~v~~~~~---~~~~i~ArKgt~ 348 (353)
T 4a6d_A 310 QERTPTHYHMLLSSAGFRDFQFKKTGA---IYDAILARKGTH 348 (353)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEECCSS---SCEEEEEECCCC
T ss_pred cCCCHHHHHHHHHHCCCceEEEEEcCC---ceEEEEEEecCc
Confidence 1245788899999999888776532 235667777543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=113.75 Aligned_cols=104 Identities=13% Similarity=0.253 Sum_probs=81.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++..++|+|+++.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~--~~~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADA----LPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL--PFSDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHT----CTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC--SBCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhC--CCCCCceeEEE
Confidence 47889999999999998877775 45679999999999999998764 2347888888764 23457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
++.. ..++.++.++|||||+++++.+......++
T Consensus 154 ~~~~----------------------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 187 (269)
T 1p91_A 154 RIYA----------------------------PCKAEELARVVKPGGWVITATPGPRHLMEL 187 (269)
T ss_dssp EESC----------------------------CCCHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred EeCC----------------------------hhhHHHHHHhcCCCcEEEEEEcCHHHHHHH
Confidence 8533 123788899999999999988866544443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=106.11 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh-----hhcC-
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE-----KRLA- 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~-----~~~~- 113 (256)
.++.+|||+|||+|.++..+++. ++.|+|+|+++.. .. ...++++|+.+... ....
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 47899999999999987766554 5699999999742 12 23899999876421 1111
Q ss_pred ---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 114 ---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
++||+|++|++........ .. ..........++..+.++|||||++++..........+...+.. .
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~-----~d-----~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~ 155 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPS-----RD-----HAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-N 155 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHH-----HH-----HHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-G
T ss_pred ccCCcceEEecCCCcCCCCCcc-----cC-----HHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-h
Confidence 4899999998643322110 00 00112235677889999999999999866544444556666644 3
Q ss_pred CcEEE
Q 025180 191 YAARI 195 (256)
Q Consensus 191 ~~~~~ 195 (256)
|....
T Consensus 156 F~~v~ 160 (191)
T 3dou_A 156 FSSYK 160 (191)
T ss_dssp EEEEE
T ss_pred cCEEE
Confidence 55433
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=116.60 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=93.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.++. ++++...+.. .+++.+|+.+.. + +||+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~----p-~~D~ 250 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLRE----HPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV----P-HADV 250 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHH----CTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC----C-CCSE
T ss_pred cCCceEEEECCccCHHHHHHHHH----CCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC----C-CCcE
Confidence 46789999999999998888877 78889999999 44544 3332222332 388999987432 2 8999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++...+++.++. ....+++++.+.|||||+++++....
T Consensus 251 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~ 311 (348)
T 3lst_A 251 HVLKRILHNWGDE-------------------DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTG 311 (348)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSC
T ss_pred EEEehhccCCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCC
Confidence 9997665544332 14688999999999999999976311
Q ss_pred --CCHHHHHHHHHHcCCcEEEEEe
Q 025180 177 --NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...+++.+++++.||+...+..
T Consensus 312 ~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 312 QERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEEEE
Confidence 1345788889999999887776
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=117.21 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||||||+|.+++.+++. +. .+|+|+|.++ +++.|++++..|++.. .++++|+.+... +++||+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a----GA-~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l---pe~~Dv 152 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA----GA-RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL---PEQVDA 152 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC---SSCEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh----CC-CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC---CccccE
Confidence 37899999999999998877765 22 3799999996 8899999999999865 899999988743 368999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+.+--.... + ...+..++....++|||||+++-
T Consensus 153 ivsE~~~~~l~---------------~---e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 153 IVSEWMGYGLL---------------H---ESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EECCCCBTTBT---------------T---TCSHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeccccccc---------------c---cchhhhHHHHHHhhCCCCceECC
Confidence 99964211100 0 11267888888999999999873
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-12 Score=100.47 Aligned_cols=128 Identities=11% Similarity=0.111 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhccc-----CCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEE-Ecchhhchh----
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQE-----VPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLI-NTDIASGLE---- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~-----~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~-~~d~~~~~~---- 109 (256)
.++.+|||+|||+|.+++.+++.+... .++.+|+|+|+++.+ ... ..++ .+|+.+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence 468999999999999999888874210 012699999999842 112 3777 788765421
Q ss_pred --hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025180 110 --KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 110 --~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
....++||+|++++++....... ... .........++..+.++|||||++++.........++...+.
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 159 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRD-----LDH-----DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLT 159 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHH-----HHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcc-----cCH-----HHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHH
Confidence 11235899999987543321110 000 000112357899999999999999997665544456666665
Q ss_pred Hc
Q 025180 188 EK 189 (256)
Q Consensus 188 ~~ 189 (256)
..
T Consensus 160 ~~ 161 (196)
T 2nyu_A 160 EE 161 (196)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=111.14 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=75.1
Q ss_pred CCCEEEEecccccHHH----HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025180 42 HPVLCMEVGCGSGYVI----TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~----~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
++.+|||+|||||..+ +.+++.+.....+++|+|+|+|+.|++.|++++.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 4689999999999844 44444432111157999999999999999987410 01
Q ss_pred -C--------cceEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 95 -V--------HADLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 95 -~--------~~~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. ...+.++|+.+. ++. .++||+|+|.-.+++.. ......++..+++.|+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~--~~~~~~~fDlI~crnvliyf~-------------------~~~~~~vl~~~~~~L~ 243 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFD-------------------KTTQEDILRRFVPLLK 243 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSC-------------------HHHHHHHHHHHGGGEE
T ss_pred ceeechhhcccCeEEecccCCC--CCCcCCCeeEEEECCchHhCC-------------------HHHHHHHHHHHHHHhC
Confidence 0 237888888773 221 46899999943322111 1235789999999999
Q ss_pred cCeEEEE
Q 025180 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
|||++++
T Consensus 244 pgG~L~l 250 (274)
T 1af7_A 244 PDGLLFA 250 (274)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999998
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=110.02 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcc--cCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-c
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ--EVPGVQYIATDINPYAVEVTRKTLEAHN-----VH-A 97 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~--~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~-~ 97 (256)
.+...+++.+.. ...++.+|||+|||+|.++..+++.++. ..+..+|+++|+++.+++.|++++...+ .. .
T Consensus 69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 344455554421 1246789999999999999988886431 0013589999999999999999988765 23 3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++.+|+.+..+. .++||+|+++.+.. .+.+.+.+.|||||++++...
T Consensus 148 ~~~~~d~~~~~~~--~~~fD~I~~~~~~~---------------------------~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 148 LIVEGDGRKGYPP--NAPYNAIHVGAAAP---------------------------DTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEESCGGGCCGG--GCSEEEEEECSCBS---------------------------SCCHHHHHTEEEEEEEEEEES
T ss_pred EEEECCcccCCCc--CCCccEEEECCchH---------------------------HHHHHHHHHhcCCCEEEEEEe
Confidence 8899998774332 36899999987643 223667889999999999654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=111.89 Aligned_cols=136 Identities=15% Similarity=0.239 Sum_probs=100.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.++++ ...+++.+|+.+..+ .+ |+|+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~p---~~--D~v~ 266 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAK----YPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFDGVP---KG--DAIF 266 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCCC---CC--SEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCCCCC---CC--CEEE
Confidence 35689999999999998888877 78899999999 8888876542 234899999886322 23 9999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC------------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------ 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------ 176 (256)
+.-.+++.++. ....+++++++.|+|||+++++....
T Consensus 267 ~~~vlh~~~~~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (368)
T 3reo_A 267 IKWICHDWSDE-------------------HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327 (368)
T ss_dssp EESCGGGBCHH-------------------HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred EechhhcCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence 97655433321 24688999999999999999876321
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...++..+++++.||....+...... ..++++.+
T Consensus 328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~---~~vie~~k 366 (368)
T 3reo_A 328 PGGKERTEKEFQALAMASGFRGFKVASCAFN---TYVMEFLK 366 (368)
T ss_dssp SBCCCCCHHHHHHHHHHTTCCEEEEEEEETT---EEEEEEEC
T ss_pred CCCccCCHHHHHHHHHHCCCeeeEEEEeCCC---cEEEEEEe
Confidence 12346788888999998777665432 34666655
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-13 Score=113.83 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~ 102 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++..++. ..+++++
T Consensus 14 ~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 84 (285)
T 1zq9_A 14 PLIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG 84 (285)
T ss_dssp HHHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc
Confidence 445566666653 257789999999999999888876 34899999999999999999876665 2389999
Q ss_pred chhhchhhhcCCCccEEEECCCCCC
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
|+.+... .+||+|++|+||+.
T Consensus 85 D~~~~~~----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 85 DVLKTDL----PFFDTCVANLPYQI 105 (285)
T ss_dssp CTTTSCC----CCCSEEEEECCGGG
T ss_pred ceecccc----hhhcEEEEecCccc
Confidence 9987522 37999999999964
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-12 Score=104.81 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCCCEEEEeccc------ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE-EEcchhhchhhhcC
Q 025180 41 HHPVLCMEVGCG------SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL-INTDIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG------~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 113 (256)
.++.+|||+||| +|. ..+++.+ .+++.|+|+|+++. + ...++ +++|+.+... .
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~---~~~~~V~gvDis~~-v-----------~~v~~~i~gD~~~~~~---~ 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWL---PTGTLLVDSDLNDF-V-----------SDADSTLIGDCATVHT---A 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHS---CTTCEEEEEESSCC-B-----------CSSSEEEESCGGGCCC---S
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHc---CCCCEEEEEECCCC-C-----------CCCEEEEECccccCCc---c
Confidence 578899999994 476 2234442 23579999999998 1 12478 9999987532 3
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
++||+|++|++....... .............+++.+.++|||||++++.........++...+.+.||..
T Consensus 122 ~~fD~Vvsn~~~~~~g~~----------~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHV----------TKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWT 191 (290)
T ss_dssp SCEEEEEECCCCCC---C----------CSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEE
T ss_pred CcccEEEEcCCccccccc----------cccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcE
Confidence 689999999752211000 0011112234678899999999999999996655555568888888888865
Q ss_pred EEEEecCCCCccEEEEEEEe
Q 025180 194 RIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 194 ~~~~~~~~~~~~~~l~~~~~ 213 (256)
..+..........+++....
T Consensus 192 v~~~asr~~s~e~~lv~~~~ 211 (290)
T 2xyq_A 192 AFVTNVNASSSEAFLIGANY 211 (290)
T ss_dssp EEEEGGGTTSSCEEEEEEEE
T ss_pred EEEEEcCCCchheEEecCCc
Confidence 54442222234445555443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.7e-12 Score=108.94 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+..+ .+ |+|+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~p---~~--D~v~ 264 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAH----YPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFKEVP---SG--DTIL 264 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTCCC---CC--SEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHH----CCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCCCCC---CC--CEEE
Confidence 35689999999999998888877 78899999999 8888776542 234899999887322 23 9999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------- 177 (256)
+.-.++..++. ....+++++++.|+|||+++++.....
T Consensus 265 ~~~vlh~~~d~-------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~ 325 (364)
T 3p9c_A 265 MKWILHDWSDQ-------------------HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHN 325 (364)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred ehHHhccCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcc
Confidence 96554433321 256889999999999999999653211
Q ss_pred ------CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025180 178 ------DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
..++..+++++.||+...+..... ...++++.
T Consensus 326 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~---~~~vie~~ 363 (364)
T 3p9c_A 326 PGGRERYEREFQALARGAGFTGVKSTYIYA---NAWAIEFT 363 (364)
T ss_dssp SSCCCCBHHHHHHHHHHTTCCEEEEEEEET---TEEEEEEE
T ss_pred cCCccCCHHHHHHHHHHCCCceEEEEEcCC---ceEEEEEe
Confidence 134677888889998877665533 23455554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=107.76 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=90.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|-+++.++.. .|+++++++|+++.+++.+++|+..+++...+...|.....+ ++.+|+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~----~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p---~~~~DvaL 203 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGL----PAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL---DEPADVTL 203 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTC----CTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC---CSCCSEEE
T ss_pred CCCceeeeeccCccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC---CCCcchHH
Confidence 35789999999999976555443 688999999999999999999999999988999999877643 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------CHHHHHHHHHHc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------DPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~~~~~~~ 189 (256)
++--+....+ .. ....+ .+.+.|+++|+++- .+..+ ......+.+.+.
T Consensus 204 ~lkti~~Le~--------------q~-----kg~g~-~ll~aL~~~~vvVS-fp~ksl~Grs~gm~~~Y~~~~e~~~~~~ 262 (281)
T 3lcv_B 204 LLKTLPCLET--------------QQ-----RGSGW-EVIDIVNSPNIVVT-FPTKSLGQRSKGMFQNYSQSFESQARER 262 (281)
T ss_dssp ETTCHHHHHH--------------HS-----TTHHH-HHHHHSSCSEEEEE-EECC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh--------------hh-----hHHHH-HHHHHhCCCCEEEe-ccchhhcCCCcchhhHHHHHHHHHHHhc
Confidence 9643211100 00 01223 67788999999886 34311 123555666667
Q ss_pred CCcEEE
Q 025180 190 GYAARI 195 (256)
Q Consensus 190 g~~~~~ 195 (256)
|+.+..
T Consensus 263 g~~~~~ 268 (281)
T 3lcv_B 263 SCRIQR 268 (281)
T ss_dssp TCCEEE
T ss_pred CCceee
Confidence 885433
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=111.87 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +..|+|+|+++.+++.+++++..++.+. +++++|
T Consensus 28 ~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D 98 (299)
T 2h1r_A 28 PGILDKIIYAAK---IKSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGD 98 (299)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECc
Confidence 345566665543 247789999999999988766653 4589999999999999999998777644 889999
Q ss_pred hhhchhhhcCCCccEEEECCCCC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
+.+.. ..+||+|++|+||.
T Consensus 99 ~~~~~----~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 99 AIKTV----FPKFDVCTANIPYK 117 (299)
T ss_dssp CCSSC----CCCCSEEEEECCGG
T ss_pred hhhCC----cccCCEEEEcCCcc
Confidence 87752 24899999999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=110.33 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=97.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+. . +. ||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~-~~-~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISK----YPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFAS---V-PQ-GDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTTC---C-CC-EEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHH----CCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCcccC---C-CC-CCEEE
Confidence 35789999999999998888877 78889999999 9998877642 1248999998773 1 23 99999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---CC--------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---AN-------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~-------------------- 177 (256)
+.-.+++.++. ....+++++.+.|+|||+++++... ..
T Consensus 273 ~~~~lh~~~d~-------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 333 (372)
T 1fp1_D 273 LKAVCHNWSDE-------------------KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV 333 (372)
T ss_dssp EESSGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc
Confidence 97665543321 1358899999999999999987421 10
Q ss_pred -----CHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025180 178 -----DPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 178 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
...++.+++++.||....+....... +.++++.
T Consensus 334 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~--~~vie~~ 371 (372)
T 1fp1_D 334 GGRERTEKQYEKLSKLSGFSKFQVACRAFNS--LGVMEFY 371 (372)
T ss_dssp SCCCEEHHHHHHHHHHTTCSEEEEEEEETTT--EEEEEEE
T ss_pred CCccCCHHHHHHHHHHCCCceEEEEEcCCCC--eEEEEEe
Confidence 13466777888899877766533221 2555543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=105.81 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=89.2
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
-|..|- ..-.+.+++.+.. ..++.+|||+|||+|.++..+++. + ..+|+|+|+++.|++.++++.....
T Consensus 16 ~yvsrg--~~kL~~~L~~~~~--~~~g~~VLDiGcGtG~~t~~la~~----g-~~~V~gvDis~~ml~~a~~~~~~~~-- 84 (232)
T 3opn_A 16 RYVSRG--GLKLEKALKEFHL--EINGKTCLDIGSSTGGFTDVMLQN----G-AKLVYALDVGTNQLAWKIRSDERVV-- 84 (232)
T ss_dssp CSSSTT--HHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEECSSCCCCCHHHHTCTTEE--
T ss_pred CccCCc--HHHHHHHHHHcCC--CCCCCEEEEEccCCCHHHHHHHhc----C-CCEEEEEcCCHHHHHHHHHhCcccc--
Confidence 355543 3333455555532 235789999999999998887765 2 2389999999999998776432111
Q ss_pred ceEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 97 ADLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.....++.... .......||.+.++..|.. +..++.++.++|||||+++++..+
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~------------------------l~~~l~~i~rvLkpgG~lv~~~~p 139 (232)
T 3opn_A 85 -VMEQFNFRNAVLADFEQGRPSFTSIDVSFIS------------------------LDLILPPLYEILEKNGEVAALIKP 139 (232)
T ss_dssp -EECSCCGGGCCGGGCCSCCCSEEEECCSSSC------------------------GGGTHHHHHHHSCTTCEEEEEECH
T ss_pred -ccccceEEEeCHhHcCcCCCCEEEEEEEhhh------------------------HHHHHHHHHHhccCCCEEEEEECc
Confidence 00111221111 1111123566666655532 246799999999999999986310
Q ss_pred C---------------------CCHHHHHHHHHHcCCcEEEEE
Q 025180 176 A---------------------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 176 ~---------------------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
. ...+++.+.+.+.||....+.
T Consensus 140 ~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 140 QFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 0 012367788888999876654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=107.57 Aligned_cols=134 Identities=11% Similarity=0.134 Sum_probs=87.0
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~ 107 (256)
+.+++.+.. ..++.+|||+|||||.++..+++. +..+|+|+|+++.|++.+.++- ... .+...++...
T Consensus 74 ~~~l~~~~~--~~~g~~vLDiGcGTG~~t~~L~~~-----ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l 142 (291)
T 3hp7_A 74 EKALAVFNL--SVEDMITIDIGASTGGFTDVMLQN-----GAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYA 142 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT-----TCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGC
T ss_pred HHHHHhcCC--CccccEEEecCCCccHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHhC----cccceecccCceec
Confidence 344444431 236789999999999998877765 2348999999999998754321 111 1112233332
Q ss_pred hhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CC--------
Q 025180 108 LEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-AN-------- 177 (256)
Q Consensus 108 ~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~-------- 177 (256)
... +...+||+|+++..|+. +..++..+.++|+|||+++++..+ +.
T Consensus 143 ~~~~l~~~~fD~v~~d~sf~s------------------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~ 198 (291)
T 3hp7_A 143 EPVDFTEGLPSFASIDVSFIS------------------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGK 198 (291)
T ss_dssp CGGGCTTCCCSEEEECCSSSC------------------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-
T ss_pred chhhCCCCCCCEEEEEeeHhh------------------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCC
Confidence 211 12245999999876642 356799999999999999886211 11
Q ss_pred ------------CHHHHHHHHHHcCCcEEEEE
Q 025180 178 ------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 ------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++..++...||....+.
T Consensus 199 ~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 199 NGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 12356778888999876644
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=107.27 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=92.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+.. + .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~----p-~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFTSI----P-NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTTCC----C-CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHH----CCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccCCC----C-CccEEE
Confidence 35689999999999998888776 78889999999 9999877641 12488999987632 1 399999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc---CeEEEEEEeCCC--------------------
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK---RGWLYLVTLTAN-------------------- 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~-------------------- 177 (256)
+.-.+++.++. ....+++++.+.||| ||+++++.....
T Consensus 252 ~~~~lh~~~d~-------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 312 (352)
T 1fp2_A 252 LKYILHNWTDK-------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA 312 (352)
T ss_dssp EESCGGGSCHH-------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG
T ss_pred eehhhccCCHH-------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHH
Confidence 97665543321 134889999999999 999998753211
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 -------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
..+++.+++++.||....+..
T Consensus 313 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 313 CLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp GGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred hccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 124667788888998776655
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=112.88 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=67.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc-eEEEcchhhchhhhcCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++.+|||+|||+|..++.++.. +.+|+++|+|+.+++.|++|+..+ ++.. +++++|+.+.+.....++||+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDv 166 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDY 166 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSE
T ss_pred CCCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceE
Confidence 4799999999999998877654 459999999999999999999988 7744 999999988654322358999
Q ss_pred EEECCCCCCC
Q 025180 119 MVVNPPYVPT 128 (256)
Q Consensus 119 Ii~npP~~~~ 128 (256)
|++||||...
T Consensus 167 V~lDPPrr~~ 176 (410)
T 3ll7_A 167 IYVDPARRSG 176 (410)
T ss_dssp EEECCEEC--
T ss_pred EEECCCCcCC
Confidence 9999999763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=107.93 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-------HHHHHHHHHHHHcCCc--ceEEEcchhhchhhh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-------YAVEVTRKTLEAHNVH--ADLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-------~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~ 111 (256)
.++.+|||+|||+|.+++.++.. +++|+|+|+++ .+++.|++|+..+++. .+++++|+.+.+..+
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence 35789999999999999988875 45899999999 9999999998887763 489999998875544
Q ss_pred cC--CCccEEEECCCCCCC
Q 025180 112 LA--GLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~--~~fD~Ii~npP~~~~ 128 (256)
.+ ++||+|++||||.+.
T Consensus 156 ~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHCCCSEEEECCCC---
T ss_pred hccCCCccEEEECCCCCCc
Confidence 33 689999999999653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=104.98 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++.. .-+.+++++|+
T Consensus 36 ~~i~~~Iv~~l~---~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~~~~-~~~v~vi~gD~ 105 (295)
T 3gru_A 36 KNFVNKAVESAN---LTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKLKEL-YNNIEIIWGDA 105 (295)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHHHHH-CSSEEEEESCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHhcc-CCCeEEEECch
Confidence 345566666553 257889999999999999888876 35899999999999999999862 22348999999
Q ss_pred hhchhhhcCCCccEEEECCCCC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
.+...+ +..||.|++|+||+
T Consensus 106 l~~~~~--~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 106 LKVDLN--KLDFNKVVANLPYQ 125 (295)
T ss_dssp TTSCGG--GSCCSEEEEECCGG
T ss_pred hhCCcc--cCCccEEEEeCccc
Confidence 876322 35799999999996
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=118.47 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=81.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+.+.+|||||||+|.++..+++. ++.|+|||.++.+++.|+......+ ++.++.++++.+......+++||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEE
Confidence 45689999999999998888876 6799999999999999999988877 5669999999887655556899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.-.+.+.+++. . . ..+..+.+.|+++|..++...
T Consensus 139 ~~~e~~ehv~~~~---------------~---~-~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 139 IGLSVFHHIVHLH---------------G---I-DEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp EEESCHHHHHHHH---------------C---H-HHHHHHHHHHHHHSSEEEEEC
T ss_pred EECcchhcCCCHH---------------H---H-HHHHHHHHHhccccceeeEEe
Confidence 9954433222110 0 1 112345667888888776553
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=105.87 Aligned_cols=123 Identities=14% Similarity=0.215 Sum_probs=92.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++. ...+++.+|+.+. . + .||+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~-~-~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEI----FPHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFKS---I-P-SADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTTC---C-C-CCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHH----CCCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCCC---C-C-CceEEEE
Confidence 5689999999999998888877 78889999999 7888766541 1248889998762 1 2 4999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc---CeEEEEEEeCCC---------------------
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK---RGWLYLVTLTAN--------------------- 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~--------------------- 177 (256)
...+++.++.+ ...+++++.+.|+| ||+++++.....
T Consensus 258 ~~vlh~~~d~~-------------------~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 318 (358)
T 1zg3_A 258 KWVLHDWNDEQ-------------------SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT 318 (358)
T ss_dssp ESCGGGSCHHH-------------------HHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred cccccCCCHHH-------------------HHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence 77665443321 45889999999999 999998653211
Q ss_pred -------CHHHHHHHHHHcCCcEEEEEe
Q 025180 178 -------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 178 -------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
...++.+++++.||....+..
T Consensus 319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 319 MFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 234667778888998777665
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=100.48 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCCEEEEecccc--cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchh----hhcCC
Q 025180 42 HPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLE----KRLAG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~--G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~----~~~~~ 114 (256)
...+|||+|||+ +..+..+++.. .|+++|+++|+|+.|++.|+.++...+.. ..++++|+.+... +...+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~---~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSV---APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHH---CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHH---CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 447999999997 33444444433 68899999999999999999887644322 3899999987521 11124
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.|| .|++|-.+++.++.+ ....++..+.+.|+|||++++.+....
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~------------------~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDED------------------DAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGG------------------CHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred ccCcCCcchHHhhhhHhcCCchh------------------hHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 455 577877666554432 135789999999999999999876543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=99.73 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++.. .-+.+++++|+
T Consensus 15 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~ 84 (255)
T 3tqs_A 15 SFVLQKIVSAIH---PQKTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDA 84 (255)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcch
Confidence 345566666653 257889999999999988777654 35899999999999999998764 22348999999
Q ss_pred hhchhhh-c-CCCccEEEECCCCC
Q 025180 105 ASGLEKR-L-AGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~-~-~~~fD~Ii~npP~~ 126 (256)
.+...+. . .++|| |++|+||+
T Consensus 85 ~~~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 85 LQFDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp TTCCGGGSCCSSCEE-EEEECCHH
T ss_pred HhCCHHHhccCCCeE-EEecCCcc
Confidence 8874321 1 35688 99999985
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=106.73 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcccccCCCCEEEEeccc------ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCG------SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG------~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
.+++.++..+. .++.+||||||| +|..++.+++.. +|+++|+|+|+++.|. ......++
T Consensus 204 ~~Ye~lL~~l~----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~---fP~a~V~GVDiSp~m~--------~~~~rI~f 268 (419)
T 3sso_A 204 PHYDRHFRDYR----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSF---FPRGQIYGLDIMDKSH--------VDELRIRT 268 (419)
T ss_dssp HHHHHHHGGGT----TSCCEEEEECCSCTTCSSCCCHHHHHHHHH---CTTCEEEEEESSCCGG--------GCBTTEEE
T ss_pred HHHHHHHHhhc----CCCCEEEEEecCCCcCCCCCHHHHHHHHHh---CCCCEEEEEECCHHHh--------hcCCCcEE
Confidence 45555555543 367999999999 677666665542 5788999999999973 12223489
Q ss_pred EEcchhhchhh--h--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 100 INTDIASGLEK--R--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 100 ~~~d~~~~~~~--~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++|+.+.... . ..++||+|+++--.+ ......+++++.++|||||++++..
T Consensus 269 v~GDa~dlpf~~~l~~~d~sFDlVisdgsH~----------------------~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 269 IQGDQNDAEFLDRIARRYGPFDIVIDDGSHI----------------------NAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp EECCTTCHHHHHHHHHHHCCEEEEEECSCCC----------------------HHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEecccccchhhhhhcccCCccEEEECCccc----------------------chhHHHHHHHHHHhcCCCeEEEEEe
Confidence 99998774211 0 147899999963211 1225788999999999999999964
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=101.21 Aligned_cols=97 Identities=7% Similarity=-0.070 Sum_probs=73.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CCcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NVHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++|||+|||+|..+.++++ . + .+|+++|+++.+++.|++++... ....+++.+|..+.. ++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~----~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----~~ 139 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFK----Y-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----KK 139 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTT----S-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----CC
T ss_pred CCCCEEEEEeCCcCHHHHHHHh----C-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----hh
Confidence 3568999999999997544433 2 4 69999999999999998876431 123488889987764 68
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++.+ + ...+++.+.+.|+|||++++...
T Consensus 140 fD~Ii~d~~-----d---------------------p~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 140 YDLIFCLQE-----P---------------------DIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp EEEEEESSC-----C---------------------CHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEECCC-----C---------------------hHHHHHHHHHhcCCCcEEEEEcC
Confidence 999999742 1 12378999999999999998644
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=103.51 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
+++.+++.+. ..++.+|||+|||+|..++.+++. .++++|+|+|+|+.+++.|++++..++....++++|+.+
T Consensus 14 Ll~e~l~~L~---~~~g~~vLD~g~G~G~~s~~la~~----~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEH----CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 4455555543 257889999999999999988887 456799999999999999999998877344899999876
Q ss_pred chhhh---cCCCccEEEECCCC
Q 025180 107 GLEKR---LAGLVDVMVVNPPY 125 (256)
Q Consensus 107 ~~~~~---~~~~fD~Ii~npP~ 125 (256)
..... ...+||.|++|||+
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHhcCCCCCCEEEEcCcc
Confidence 53211 11579999999986
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-14 Score=114.55 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=80.9
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++. .....+++++|+.+.
T Consensus 18 ~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 18 LNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQF 87 (245)
T ss_dssp HHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTT
T ss_pred HHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhc
Confidence 344544443 246789999999999999888876 2589999999999999888765 112238889998876
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH----HHHhhccccCeEEEEEE
Q 025180 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL----PSADKLLSKRGWLYLVT 173 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~LkpgG~l~~~~ 173 (256)
..+ .+++| .|++||||+....... .. ..+... ...++ +.+.++|+|||+++++.
T Consensus 88 ~~~-~~~~f-~vv~n~Py~~~~~~~~--~~--~~~~~~------~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 88 QFP-NKQRY-KIVGNIPYHLSTQIIK--KV--VFESRA------SDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TCC-CSSEE-EEEEECCSSSCHHHHH--HH--HHHCCC------EEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred Ccc-cCCCc-EEEEeCCccccHHHHH--HH--HhCCCC------CeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 321 12578 8999999986431100 00 000000 01123 55788899998877643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=99.89 Aligned_cols=143 Identities=12% Similarity=0.004 Sum_probs=98.7
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc------
Q 025180 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH------ 96 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~------ 96 (256)
.+.+++..+++- +++.+|||+|+|.|.-+..++.+ ..+..|+++|+++..++.+++|+.+.+..
T Consensus 135 ~aS~l~~~~L~~------~pg~~VLD~CAaPGGKT~~la~~----~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~ 204 (359)
T 4fzv_A 135 AASLLPVLALGL------QPGDIVLDLCAAPGGKTLALLQT----GCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGN 204 (359)
T ss_dssp GGGHHHHHHHCC------CTTEEEEESSCTTCHHHHHHHHT----TCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSS
T ss_pred HHHHHHHHHhCC------CCCCEEEEecCCccHHHHHHHHh----cCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCC
Confidence 355565555543 68999999999999999888876 34458999999999999999999987653
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..+...|..... ....+.||.|++++|...... ....+.+...+... ..-......+|..+.++|||||+++.
T Consensus 205 ~v~v~~~D~~~~~-~~~~~~fD~VLlDaPCSg~g~-g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVY 282 (359)
T 4fzv_A 205 QVRVTSWDGRKWG-ELEGDTYDRVLVDVPCTTDRH-SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVY 282 (359)
T ss_dssp SEEEECCCGGGHH-HHSTTCEEEEEEECCCCCHHH-HTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEeCchhhcc-hhccccCCEEEECCccCCCCC-cccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 267777876653 234578999999999743100 01111111111000 00012456789999999999999999
Q ss_pred EEeCCC
Q 025180 172 VTLTAN 177 (256)
Q Consensus 172 ~~~~~~ 177 (256)
++++..
T Consensus 283 sTCSl~ 288 (359)
T 4fzv_A 283 STCSLS 288 (359)
T ss_dssp EESCCC
T ss_pred EeCCCc
Confidence 998765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.8e-11 Score=91.72 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=83.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-hhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~I 119 (256)
+++.+|||+|||+ +++|+++.|++.|+++... ..+++++|+.+... ++.+++||+|
T Consensus 11 ~~g~~vL~~~~g~--------------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 11 SAGQFVAVVWDKS--------------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp CTTSEEEEEECTT--------------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCEEEEecCCc--------------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEE
Confidence 5789999999986 1279999999999987532 25889999887532 1146789999
Q ss_pred EECCCCCCC-CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------CHHHHHHHHHHc
Q 025180 120 VVNPPYVPT-PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------DPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~~~~~~ 189 (256)
+++..+++. ++ ...++++++++|||||++++..+... ...++.+.+.+.
T Consensus 68 ~~~~~l~~~~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 126 (176)
T 2ld4_A 68 LSGLVPGSTTLH---------------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLS 126 (176)
T ss_dssp EECCSTTCCCCC---------------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHT
T ss_pred EECChhhhcccC---------------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHC
Confidence 998766554 22 36889999999999999999665221 256889999999
Q ss_pred CCcEE
Q 025180 190 GYAAR 194 (256)
Q Consensus 190 g~~~~ 194 (256)
|| ..
T Consensus 127 Gf-i~ 130 (176)
T 2ld4_A 127 GL-VE 130 (176)
T ss_dssp TC-EE
T ss_pred CC-cE
Confidence 99 54
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=99.75 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+.. .++ +|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++. +.+.+++++|+
T Consensus 33 ~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~ 100 (271)
T 3fut_A 33 EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEETLS--GLPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHHTT--TSSEEEEESCG
T ss_pred HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcC--CCCEEEEECCh
Confidence 4455666666532 456 9999999999999888876 3589999999999999999875 22348999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+...+. ...+|.|++|+||+..
T Consensus 101 l~~~~~~-~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 101 LLYPWEE-VPQGSLLVANLPYHIA 123 (271)
T ss_dssp GGSCGGG-SCTTEEEEEEECSSCC
T ss_pred hhCChhh-ccCccEEEecCccccc
Confidence 8864321 1368999999999753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-10 Score=94.62 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+++++... -..+++++|+
T Consensus 16 ~~~~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~ 85 (244)
T 1qam_A 16 KHNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDI 85 (244)
T ss_dssp HHHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCG
T ss_pred HHHHHHHHHhCC---CCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHHhhccC-CCeEEEEChH
Confidence 455666666553 247789999999999999888876 258999999999999999987532 2348999999
Q ss_pred hhchhhhcCCCccEEEECCCCC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
.+...+ ....| .|++|+||+
T Consensus 86 ~~~~~~-~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 86 LQFKFP-KNQSY-KIFGNIPYN 105 (244)
T ss_dssp GGCCCC-SSCCC-EEEEECCGG
T ss_pred HhCCcc-cCCCe-EEEEeCCcc
Confidence 876322 11345 689999996
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=93.44 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=62.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++... ++..++|+|+++.+++.+++++..++.+..+...|.....+ ++++|+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~---~~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP---AEAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC---CCBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC---CCCcchHH
Confidence 368899999999999875544 46799999999999999999999999878999999887644 36999999
Q ss_pred ECC
Q 025180 121 VNP 123 (256)
Q Consensus 121 ~np 123 (256)
++-
T Consensus 174 llk 176 (253)
T 3frh_A 174 IFK 176 (253)
T ss_dssp EES
T ss_pred HHH
Confidence 863
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=93.96 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.++++ ...+.+++++|+
T Consensus 17 ~~i~~~iv~~~~---~~~~~~VLDiG~G~G~lt~~L~~~-----~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~ 85 (249)
T 3ftd_A 17 EGVLKKIAEELN---IEEGNTVVEVGGGTGNLTKVLLQH-----PLKKLYVIELDREMVENLKSI---GDERLEVINEDA 85 (249)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHTTS-----CCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCT
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEcCchHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcch
Confidence 455666666653 246889999999999988766553 246999999999999999887 222348999999
Q ss_pred hhchhhhcCCCccEEEECCCCCC
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
.+...+...+. ..|++|+||+.
T Consensus 86 ~~~~~~~~~~~-~~vv~NlPy~i 107 (249)
T 3ftd_A 86 SKFPFCSLGKE-LKVVGNLPYNV 107 (249)
T ss_dssp TTCCGGGSCSS-EEEEEECCTTT
T ss_pred hhCChhHccCC-cEEEEECchhc
Confidence 88643321123 48999999963
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=103.34 Aligned_cols=108 Identities=10% Similarity=0.052 Sum_probs=69.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcceEE--EcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHADLI--NTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~~~~--~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..+++. ..|+|+|+++ ++..++++.. ..+.+..++ ++|+.+.. +++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~ 148 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----PFQ 148 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC----CCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC----CCC
Confidence 47899999999999988766653 3899999998 5333222100 011133777 88887742 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe--EEEEEEeC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG--WLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 175 (256)
||+|+|+.. +...... .. ......++..+.++||||| .+++....
T Consensus 149 fD~Vvsd~~-~~~~~~~-----~d---------~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 149 ADTVLCDIG-ESNPTAA-----VE---------ASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CSEEEECCC-CCCSCHH-----HH---------HHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCEEEECCC-cCCCchh-----hh---------HHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 999999876 2222110 00 0001137888999999999 88875544
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-10 Score=93.98 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++..++....++ +++|+|+|+++.+++.++++. ..+.+++++|+
T Consensus 28 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~~--~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIR---PERGERMVEIGPGLGALTGPVIARLATP--GSPLHAVELDRDLIGRLEQRF---GELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHHHHHCBT--TBCEEEEECCHHHHHHHHHHH---GGGEEEEESCG
T ss_pred HHHHHHHHHhcC---CCCcCEEEEEccccHHHHHHHHHhCCCc--CCeEEEEECCHHHHHHHHHhc---CCCcEEEECCh
Confidence 345566666653 2578899999999999999988874210 245999999999999999983 22348999999
Q ss_pred hhchhh-hcC-C--CccEEEECCCCC
Q 025180 105 ASGLEK-RLA-G--LVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~-~~~-~--~fD~Ii~npP~~ 126 (256)
.+...+ ..+ . ..+.|++|+||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 100 LTFDFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGCCGGGGSCSSSSCCEEEEEECCHH
T ss_pred hcCChhHhcccccCCceEEEEccCcc
Confidence 886432 211 1 346899999985
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=102.43 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=69.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCCcceEE--EcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNVHADLI--NTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~~~~~~--~~d~~~~~~~~~~~~ 115 (256)
.++.+|||+|||+|.++..+++. ..|+|+|+++ ++..++++. ...+....++ ++|+.+.. +++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----~~~ 140 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP----VER 140 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC----CCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC----CCC
Confidence 57899999999999988766553 4899999998 532222110 0011133777 88887742 478
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe--EEEEEEeC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG--WLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~ 175 (256)
||+|+|+.. +....... + ......++..+.++||||| .+++....
T Consensus 141 fD~V~sd~~-~~~~~~~~-----d---------~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 141 TDVIMCDVG-ESSPKWSV-----E---------SERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CSEEEECCC-CCCSCHHH-----H---------HHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CcEEEEeCc-ccCCccch-----h---------HHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 999999876 32221100 0 0001137888999999999 88885544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-10 Score=93.15 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=62.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C-C--cceEEEcchhhchhhhcC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N-V--HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~-~--~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||+|||+|..++.++.. +++|+++|+++.+++.+++++... + + ..+++++|..+.+... .
T Consensus 90 ~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-~ 162 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-T 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-S
T ss_pred CEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-c
Confidence 89999999999999999886 458999999999888877776532 2 2 2389999998876543 3
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|++||||..
T Consensus 163 ~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 163 PRPQVVYLDPMFPH 176 (258)
T ss_dssp SCCSEEEECCCCCC
T ss_pred ccCCEEEEcCCCCC
Confidence 47999999999964
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.2e-10 Score=91.07 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=91.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhccc---CC-----CceEEEEeCCH---HHHH-----------HHHHHHHHc-----
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQE---VP-----GVQYIATDINP---YAVE-----------VTRKTLEAH----- 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~---~~-----~~~v~giD~~~---~~i~-----------~a~~~~~~~----- 93 (256)
+++.+|||+|+|+|..++.+++...+. .| ...++++|..| +.+. .+++++...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 466899999999999988877764111 34 25899999887 4443 556665541
Q ss_pred ---------C-CcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 94 ---------N-VHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 94 ---------~-~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+ ...+++.+|+.+.++.... ..||+|+.++ |.+...++ .| ...++..+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~--------lw---------~~~~l~~l~ 200 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPD--------MW---------TQNLFNAMA 200 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGG--------GC---------CHHHHHHHH
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChh--------hc---------CHHHHHHHH
Confidence 1 1227899999887665322 3799999985 22111111 11 367899999
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025180 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
++|+|||+++. +.....+++.+...||.+...
T Consensus 201 ~~L~pGG~l~t----ysaa~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 201 RLARPGGTLAT----FTSAGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp HHEEEEEEEEE----SCCBHHHHHHHHHHTEEEEEE
T ss_pred HHcCCCcEEEE----EeCCHHHHHHHHHCCCEEEeC
Confidence 99999999885 333457888898999986544
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=95.24 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+++.+. ..++.+|||+|||+|.++. +. . ....+|+|+|+++.+++.+++++... -+.+++++|+
T Consensus 7 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~-l~-~----~~~~~v~avEid~~~~~~a~~~~~~~-~~v~~i~~D~ 76 (252)
T 1qyr_A 7 QFVIDSIVSAIN---PQKGQAMVEIGPGLAALTE-PV-G----ERLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDA 76 (252)
T ss_dssp HHHHHHHHHHHC---CCTTCCEEEECCTTTTTHH-HH-H----TTCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCG
T ss_pred HHHHHHHHHhcC---CCCcCEEEEECCCCcHHHH-hh-h----CCCCeEEEEECCHHHHHHHHHHhccC-CceEEEECch
Confidence 345566666553 2467899999999999987 43 2 22234999999999999999876432 1348999999
Q ss_pred hhchh-hhc--CCCccEEEECCCCCC
Q 025180 105 ASGLE-KRL--AGLVDVMVVNPPYVP 127 (256)
Q Consensus 105 ~~~~~-~~~--~~~fD~Ii~npP~~~ 127 (256)
.+... ... .+..|.|++|+||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 77 MTFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred hhCCHHHhhcccCCceEEEECCCCCc
Confidence 87532 211 134689999999974
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-09 Score=83.15 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--c--ceEEEcchhhc----------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--H--ADLINTDIASG---------- 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~--~~~~~~d~~~~---------- 107 (256)
+.++|||+||| .-++.+++. ++++|+++|.+++..+.|+++++..++ . .+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-----~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-----PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-----TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred CCCEEEEECch--HHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccch
Confidence 56899999985 566666653 257999999999999999999999986 3 38899996543
Q ss_pred ----hhh-------h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 108 ----LEK-------R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 108 ----~~~-------~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++. . ..++||+|+.+-.+ ....+..+.++|+|||++++
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k--------------------------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF--------------------------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEECSSS--------------------------HHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEeCCC--------------------------chhHHHHHHHhcCCCeEEEE
Confidence 111 1 13689999996321 23556667789999999976
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-10 Score=95.77 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC----CHHHHHHHHHHHHHcCCcc-eEEEc-chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI----NPYAVEVTRKTLEAHNVHA-DLINT-DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~----~~~~i~~a~~~~~~~~~~~-~~~~~-d~~~~~~~~~~~ 114 (256)
.++.+|||+|||+|.++..+++. ..|+|+|+ ++.+++.+. ....+.+. .++++ |+.+.. .+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~----~~ 147 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP----PE 147 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC----CC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC----cC
Confidence 46789999999999998776653 37999999 554432111 11112233 77777 776542 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+||+|+|+.++. ..... .. ......++..+.++|||||.+++.....
T Consensus 148 ~fD~V~sd~~~~-~g~~~-----~d---------~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 148 RCDTLLCDIGES-SPNPT-----VE---------AGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCSEEEECCCCC-CSSHH-----HH---------HHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCEEEECCccc-cCcch-----hh---------HHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 899999987653 11100 00 0001146888889999999988854433
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-09 Score=86.52 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C-C---cceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N-V---HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~-~---~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||=+|-|.|..+.++++. .+..+|+.+||++..++.+++.+... + . ..+++.+|....+.. .++
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~----~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-~~~ 156 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRH----KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQ 156 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTC----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-SSC
T ss_pred CCCCeEEEECCCchHHHHHHHHc----CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-ccc
Confidence 46799999999999986655553 34568999999999999999987542 1 1 238999999998754 457
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+||.+.+-...+. . .+ ....+++.+.+.|+|||+++.-.
T Consensus 157 ~yDvIi~D~~dp~~~~-~--------~L--------~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 157 TFDVIISDCTDPIGPG-E--------SL--------FTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CEEEEEESCCCCCCTT-C--------CS--------SCCHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCEEEEeCCCcCCCc-h--------hh--------cCHHHHHHHHHHhCCCCEEEEec
Confidence 8999999864211111 0 01 13578999999999999999854
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=98.08 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+.|||+|||+|-+....++...+.....+|+|||.++ +...+++.+..|++.. +++++|+.+...+ +++|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP---EKVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP---EKADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS---SCEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC---cccCEE
Confidence 446899999999988555555433323345799999998 5567888899999876 9999999998544 789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|+-. .. .+...+ .+..++....+.|||||+++
T Consensus 433 VSEw--------------MG-~fLl~E----~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSEL--------------LG-SFADNE----LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCC--------------CB-TTBGGG----CHHHHHHHHGGGEEEEEEEE
T ss_pred EEEc--------------Cc-cccccc----CCHHHHHHHHHhcCCCcEEc
Confidence 9932 11 111111 13467778889999999976
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-09 Score=95.96 Aligned_cols=108 Identities=17% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccC---------CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEV---------PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK- 110 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~---------~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~- 110 (256)
.+.|||+|||+|.+...+........ ...+|+|||.++.++..++.... |++.. +++.+|+.+...+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 56899999999998643333221001 23589999999988766665554 77755 9999999988542
Q ss_pred --hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 111 --RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 111 --~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
...+++|+||+-.- |-....+....++..+.+.|||||+++
T Consensus 489 ~~~~~ekVDIIVSElm-------------------Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-------------------GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-------------------BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-------------------ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 11478999999432 100011125677888889999999876
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=81.45 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=92.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
..++.|||+||..|..++.++..+...+ ++.+|+++|..+ ..++.+++|+...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4578999999999999998888764322 366899999642 1467789999998
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. .+++.+|+.+.++....++||+|..+-- . -......++.+...|+|||+++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD----------------------~-y~~~~~~Le~~~p~L~pGGiIv 241 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD----------------------L-YESTWDTLTNLYPKVSVGGYVI 241 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC----------------------S-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC----------------------c-cccHHHHHHHHHhhcCCCEEEE
Confidence 873 3999999999887655678999998621 0 1224577899999999999999
Q ss_pred EEEeCCC--CHHHHHHHHHHcCCcE
Q 025180 171 LVTLTAN--DPSQICLQMMEKGYAA 193 (256)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~~~g~~~ 193 (256)
+-..... ....+.+...+.++..
T Consensus 242 ~DD~~~~~G~~~Av~Ef~~~~~i~~ 266 (282)
T 2wk1_A 242 VDDYMMCPPCKDAVDEYRAKFDIAD 266 (282)
T ss_dssp ESSCTTCHHHHHHHHHHHHHTTCCS
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCce
Confidence 8222110 1123444455566543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=73.38 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=59.2
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+-+.|+-. .+.+++.+.... .++.+|||+|||+| .++..++.. .+..|+++|+++.+++
T Consensus 10 ~~~~~~~~~~~m~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~-----~g~~V~atDInp~Av~------ 73 (153)
T 2k4m_A 10 HSSGLVPRGSHMWNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKH-----SKVDLVLTDIKPSHGG------ 73 (153)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHH-----SCCEEEEECSSCSSTT------
T ss_pred ccCCcccchhhHHHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHh-----CCCeEEEEECCccccc------
Confidence 3445566543 233444444432 35689999999999 587777653 3678999999998877
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEE-EECCC
Q 025180 91 EAHNVHADLINTDIASGLEKRLAGLVDVM-VVNPP 124 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~I-i~npP 124 (256)
+++.|+++..... -+.||+| -.|||
T Consensus 74 --------~v~dDiF~P~~~~-Y~~~DLIYsirPP 99 (153)
T 2k4m_A 74 --------IVRDDITSPRMEI-YRGAALIYSIRPP 99 (153)
T ss_dssp --------EECCCSSSCCHHH-HTTEEEEEEESCC
T ss_pred --------eEEccCCCCcccc-cCCcCEEEEcCCC
Confidence 7888888764431 1489999 56888
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-08 Score=80.67 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=85.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc--CCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL--AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD~I 119 (256)
.+..+||+.+|||.+++++.. ++.+++.+|.++..++..++|+.. .-..++++.|....+.... ..+||+|
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS------~~d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR------SQDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC------TTSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred cCCCceeEeCCcHHHHHHHcC------CCCeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence 457799999999999876544 235899999999999999999864 2234899999877664322 3479999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEeCCCC--HHHHHHHHHHcCC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTLTAND--PSQICLQMMEKGY 191 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~ 191 (256)
+++|||.... .+..+++.+.+ .+.++|++++..|-... ...+.+.+++.+.
T Consensus 164 fiDPPYe~k~---------------------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 164 FIDPSYERKE---------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp EECCCCCSTT---------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred EECCCCCCCc---------------------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 9999995311 14455555443 57799999998875442 2234444444454
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=7.9e-07 Score=76.80 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CC---c---ceEEEcchhhchhhh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NV---H---ADLINTDIASGLEKR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~---~---~~~~~~d~~~~~~~~ 111 (256)
.++++||=+|-|.|..+.++.+. +..+|+.+||++..++.+++.+... .. . .+++.+|...++...
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-----~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-----KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-----CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-----CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 35789999999999986655543 3458999999999999999865321 11 1 278899998887532
Q ss_pred --cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 --LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+||+||.+.+=....... . +.........+++.+.+.|+|||+++.-.
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p---~--------g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSP---E--------EDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC---------------CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcc---c--------CcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 246899999975321111000 0 00112345788999999999999998743
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-07 Score=74.10 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=64.5
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
|.+.+++.+. .+++..++|.+||.|..+..+++. ++.|+|+|.++.+++.|++ +.. -...++++++.+
T Consensus 10 Ll~e~le~L~---~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA---VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGG
T ss_pred HHHHHHHhhC---CCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcch
Confidence 3344444443 257899999999999998877764 4699999999999999988 543 234899999877
Q ss_pred chh---hhcCCCccEEEECCCC
Q 025180 107 GLE---KRLAGLVDVMVVNPPY 125 (256)
Q Consensus 107 ~~~---~~~~~~fD~Ii~npP~ 125 (256)
... .....++|.|++|+.+
T Consensus 78 l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 78 LKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHHcCCCCcCEEEeCCcc
Confidence 632 2223579999997764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=75.96 Aligned_cols=136 Identities=10% Similarity=-0.011 Sum_probs=73.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.++..+++. .+-..++|+|+...+....... ...+.+...+..++.. ..+..+.||+|+
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~----~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv--~~l~~~~~DlVl 145 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQ----KEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDI--HRLEPVKCDTLL 145 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCT--TTSCCCCCSEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHh----cCCCcceeEEEeccCccccccc-CcCCCCeEEEecccee--hhcCCCCccEEE
Confidence 57789999999999998766654 2334678888874321000000 0001122334444311 123457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEeC--CCCHHHHHHHHHHcCCcEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTLT--ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|+.-.. +... +.+ ......+++.+.+.|+|| |.+++-... .....++...++...-.+....
T Consensus 146 sD~apn-sG~~-----~~D---------~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~K 210 (277)
T 3evf_A 146 CDIGES-SSSS-----VTE---------GERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRN 210 (277)
T ss_dssp ECCCCC-CSCH-----HHH---------HHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECC
T ss_pred ecCccC-cCch-----HHH---------HHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEe
Confidence 985322 1111 000 001223478889999999 999985543 2333455666655433333333
Q ss_pred e
Q 025180 198 Q 198 (256)
Q Consensus 198 ~ 198 (256)
+
T Consensus 211 P 211 (277)
T 3evf_A 211 P 211 (277)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-06 Score=69.43 Aligned_cols=136 Identities=13% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc--eEEEEeCCH--------HHHH-HHHHHHHHc----C--CcceEEEcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV--QYIATDINP--------YAVE-VTRKTLEAH----N--VHADLINTD 103 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~--~v~giD~~~--------~~i~-~a~~~~~~~----~--~~~~~~~~d 103 (256)
++.-+|||+|-|+|...+.....+.+..|+. .++++|..+ +..+ ..+...... + +..++..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 4567899999999998765554443334554 456777532 1111 122222221 1 122788999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.++......||+|+.++ |.+.-.++ .| ...+++.+.++++|||++.- +.....++
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNPe--------LW---------s~e~f~~l~~~~~pgg~laT----Ytaag~VR 232 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNPE--------LW---------TLDFLSLIKERIDEKGYWVS----YSSSLSVR 232 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSGG--------GG---------SHHHHHHHHTTEEEEEEEEE----SCCCHHHH
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----EeCcHHHH
Confidence 99887765455899999975 44333332 12 46899999999999999874 44567899
Q ss_pred HHHHHcCCcEEEEEe
Q 025180 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.|...||.+..+..
T Consensus 233 R~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 233 KSLLTLGFKVGSSRE 247 (308)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHHCCCEEEecCC
Confidence 999999999766544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=68.33 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=81.0
Q ss_pred CCEEEEecccccHHHHHHHHHh----cc---------cCCCceEEEEeCC-----------HHHHHHHHHHHHHcCC--c
Q 025180 43 PVLCMEVGCGSGYVITSLALML----GQ---------EVPGVQYIATDIN-----------PYAVEVTRKTLEAHNV--H 96 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l----~~---------~~~~~~v~giD~~-----------~~~i~~a~~~~~~~~~--~ 96 (256)
..+|+|+||++|..++.+...+ .+ ..|..+|+.-|+- +...+.+++ ..+. .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 6899999999999998877762 22 2467889999987 444333222 2222 2
Q ss_pred ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCccccccc------ch-hhhcCCCC-----------cHHHHHHHHH
Q 025180 97 ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREG------IA-SAWAGGEN-----------GRAVIDKILP 157 (256)
Q Consensus 97 ~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~------~~-~~~~~~~~-----------~~~~~~~~l~ 157 (256)
.-++.+...++-. -++++++|+|+++..++..+.......+ .+ ..+..... ....+..||+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566665555432 2346899999999888876654321110 00 00111110 0123456688
Q ss_pred HHhhccccCeEEEEEEeCCCC
Q 025180 158 SADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~ 178 (256)
...+.|+|||++++...+...
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCT
T ss_pred HHHHHhccCCeEEEEEecCCC
Confidence 889999999999998875544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-06 Score=71.20 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+++.++.... .++..|||++||+|..++++++. +..++|+|+++.+++.|++++...
T Consensus 221 p~~l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 221 PLELAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CHHHHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3556666666542 57899999999999999887765 458999999999999999998754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-07 Score=73.58 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=79.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
..|..|. ...|.+ +.+.. .+ +++.+|||+|||.|.++..+++. .+-..++|+|+...+...+... ...+.
T Consensus 69 g~YrSRA-AfKL~e-i~eK~-~L--k~~~~VLDLGaAPGGWsQvAa~~----~gv~sV~GvdvG~d~~~~pi~~-~~~g~ 138 (282)
T 3gcz_A 69 GIAVSRG-SAKLRW-MEERG-YV--KPTGIVVDLGCGRGGWSYYAASL----KNVKKVMAFTLGVQGHEKPIMR-TTLGW 138 (282)
T ss_dssp SBCSSTH-HHHHHH-HHHTT-SC--CCCEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCCC-CBTTG
T ss_pred CCEecHH-HHHHHH-HHHhc-CC--CCCCEEEEeCCCCCHHHHHHHHh----cCCCeeeeEEeccCcccccccc-ccCCC
Confidence 4555552 333333 44433 22 57789999999999998766653 3344789999976532211100 00122
Q ss_pred cceEEEc--chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEE
Q 025180 96 HADLINT--DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYL 171 (256)
Q Consensus 96 ~~~~~~~--d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~ 171 (256)
+...+.. |+. .+...++|+|+|+..-. +.... .+ ......+++.+.+.|+|| |.+++
T Consensus 139 ~ii~~~~~~dv~----~l~~~~~DvVLSDmApn-sG~~~-----~D---------~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 139 NLIRFKDKTDVF----NMEVIPGDTLLCDIGES-SPSIA-----VE---------EQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp GGEEEECSCCGG----GSCCCCCSEEEECCCCC-CSCHH-----HH---------HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ceEEeeCCcchh----hcCCCCcCEEEecCccC-CCChH-----HH---------HHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 2222221 332 22357899999986433 22111 01 011224578888999999 99998
Q ss_pred EEeC--CCCHHHHHHHHHHc
Q 025180 172 VTLT--ANDPSQICLQMMEK 189 (256)
Q Consensus 172 ~~~~--~~~~~~~~~~~~~~ 189 (256)
-... .....++...++..
T Consensus 200 KvF~pyg~~~~~l~~~lk~~ 219 (282)
T 3gcz_A 200 KVLCPYTPLIMEELSRLQLK 219 (282)
T ss_dssp EESCCCSHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHh
Confidence 5543 23334556666554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-06 Score=73.57 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=59.5
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|+.+.+....+++||+|++||||+............ ............+..++.++.++|||||.+++......
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~-~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL-GHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh-cccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 89999999976655568999999999998643211100000 00000011122356778899999999999998654211
Q ss_pred -------------CHHHHHHHHHHcCCcE
Q 025180 178 -------------DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 -------------~~~~~~~~~~~~g~~~ 193 (256)
....+...+.+.||..
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~ 130 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDN 130 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCee
Confidence 1246777888889865
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=69.45 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=81.2
Q ss_pred CCEEEEecccccHHHHHHHHHhc-----------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----------C--cce
Q 025180 43 PVLCMEVGCGSGYVITSLALMLG-----------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----------V--HAD 98 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~-----------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----------~--~~~ 98 (256)
+.+|+|+|||+|..++.+...+- ...|..+|+.-|+-.+.....=+.+.... . ..-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 68999999999999888744321 12378899999988877655544433211 0 112
Q ss_pred EEEcchhhch-hhhcCCCccEEEECCCCCCCCCccccccc-chhhh------cCCCC----------cHHHHHHHHHHHh
Q 025180 99 LINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAW------AGGEN----------GRAVIDKILPSAD 160 (256)
Q Consensus 99 ~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~------~~~~~----------~~~~~~~~l~~~~ 160 (256)
+..+...++- ..+++++||+|+++..++..+.......+ ...+| ..... ....+..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333321 12346899999999988876653321110 00000 00000 0123556788899
Q ss_pred hccccCeEEEEEEeCCC
Q 025180 161 KLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~ 177 (256)
+.|+|||++++...+..
T Consensus 213 ~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHEEEEEEEEEEEEECC
T ss_pred HHhCCCCEEEEEEecCC
Confidence 99999999999877554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-05 Score=65.99 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc-CCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL-AGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~fD~Ii 120 (256)
..+|+|+.||.|.+++.+... +-+ -.++++|+++.+++..+.|.. ...++.+|+.+...... ...+|+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~----G~~~~~v~~~E~d~~a~~~~~~N~~----~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCeEEEeCcCccHHHHHHHHC----CCCceEEEEEeCCHHHHHHHHHhcc----ccccccCCHHHccHhHcCcCCcCEEE
Confidence 468999999999999888776 211 259999999999999888863 22577888887643211 12699999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeC---CCCHHHHHHHHHHcCCcEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLT---ANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~---~~~~~~~~~~~~~~g~~~~~ 195 (256)
.+||....+...... . . .+.++ .....+++ +...++ |.-+++=.... ......+.+.+.+.||.+..
T Consensus 74 ~gpPCq~fS~ag~~~-g----~-~d~r~-~l~~~~~~-~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 74 MSPPCQPFTRIGRQG-D----M-TDSRT-NSFLHILD-ILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp ECCC-------------------------CHHHHHHH-HGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred EcCCCcchhhcCCcC-C----c-cCccc-hHHHHHHH-HHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence 999976555432110 0 0 01110 11233343 334556 66443311121 11234677788888987654
Q ss_pred EEe------cCCCCccEEEEEEEec
Q 025180 196 VVQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~~------~~~~~~~~~l~~~~~~ 214 (256)
... ..+..++++++-.+++
T Consensus 146 ~vl~a~~~GvPQ~R~R~~iv~~~~~ 170 (343)
T 1g55_A 146 FLLSPTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp EEECGGGGTCSCCCCEEEEEEEESS
T ss_pred EEEEHHHCCCCCcccEEEEEEEeCC
Confidence 321 2345677777776654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.6e-06 Score=66.95 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
...|++.++... ..++..|||++||+|..++++.++ +..++|+|+++.+++.+++++..+++
T Consensus 198 p~~l~~~~i~~~----~~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 198 PRDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CHHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 355666665554 368899999999999999887765 34899999999999999999876553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00018 Score=61.32 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=91.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|+|++||+|.+++.+.+. +. -.+.++|+++.+++..+.|... ..++|+.+...... ..+|+|+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a----G~-~~v~~~e~d~~a~~t~~~N~~~------~~~~Di~~~~~~~~-~~~D~l~~ 77 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC----GA-ECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNEKTI-PDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TC-EEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCGGGS-CCCSEEEE
T ss_pred CCCcEEEECCCcCHHHHHHHHC----CC-eEEEEEeCCHHHHHHHHHHcCC------CCcCCHHHcCHhhC-CCCCEEEE
Confidence 3579999999999998877665 22 2588999999999999888642 11678877654322 35999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~ 195 (256)
.||+...+...... .+. ++++ ..+..+++-+ +.++|.-+++=..+... ....+.+.+.+.||.+..
T Consensus 78 gpPCQ~fS~ag~~~-----g~~-d~r~-~L~~~~~r~i-~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 149 (327)
T 2c7p_A 78 GFPCQAFSISGKQK-----GFE-DSRG-TLFFDIARIV-REKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp ECCCTTTCTTSCCC-----GGG-STTS-CHHHHHHHHH-HHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred CCCCCCcchhcccC-----CCc-chhh-HHHHHHHHHH-HhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence 99998776643211 011 1111 1233444433 34688633332222221 123577777888887543
Q ss_pred EE--e----cCCCCccEEEEEEEe
Q 025180 196 VV--Q----RSTEEENLHIIKFWR 213 (256)
Q Consensus 196 ~~--~----~~~~~~~~~l~~~~~ 213 (256)
.. . ..+..++++++-.++
T Consensus 150 ~vl~a~~~GvPQ~R~R~~iv~~~~ 173 (327)
T 2c7p_A 150 KVLNALDYGIPQKRERIYMICFRN 173 (327)
T ss_dssp EEEEGGGGTCSBCCEEEEEEEEBG
T ss_pred EEEEHHHcCCCccceEEEEEEEeC
Confidence 22 1 123456666666554
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00021 Score=62.07 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=89.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh------cCCCcc
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR------LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~fD 117 (256)
.+|+|+.||.|.+++.+.+. +.+ .+.++|+++.+++..+.|.. ...++++|+.+..... ....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a----G~~-~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA----GFD-VKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH----TCE-EEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHC----CCc-EEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCee
Confidence 47999999999998887776 221 47799999999988887742 2367888887764321 236799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcH-HHHHHHHHHHhhccccCeEEEEEEeCCCC------HHHHHHHHHHcC
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGR-AVIDKILPSADKLLSKRGWLYLVTLTAND------PSQICLQMMEKG 190 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g 190 (256)
+|+..||....+..... +..+.. ..+..+++ +...++|.-+++=..+.... .+.+. .+.+.|
T Consensus 74 ~i~ggpPCQ~fS~ag~~---------~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~G 142 (376)
T 3g7u_A 74 GIIGGPPCQGFSSIGKG---------NPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGD 142 (376)
T ss_dssp EEEECCCCCTTC----------------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTT
T ss_pred EEEecCCCCCcccccCC---------CCCCchHHHHHHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCC
Confidence 99999997655543211 001111 12333333 34456886444422222211 23455 778889
Q ss_pred CcE---EEEEe----cCCCCccEEEEEEEec
Q 025180 191 YAA---RIVVQ----RSTEEENLHIIKFWRD 214 (256)
Q Consensus 191 ~~~---~~~~~----~~~~~~~~~l~~~~~~ 214 (256)
|.+ ..+.. ..+...+++++-.+++
T Consensus 143 Y~v~~~~vl~a~dyGvPQ~R~R~~iig~r~~ 173 (376)
T 3g7u_A 143 YDILDPIKVKASDYGAPTIRTRYFFIGVKKS 173 (376)
T ss_dssp EEECCCEEEEGGGGTCSBCCEEEEEEEEEGG
T ss_pred CccCcEEEEEHhhCCCCCCCcEEEEEEEeCC
Confidence 876 22222 1244567776666554
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=60.13 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=81.4
Q ss_pred HHHHHhhcc--cccCCCCEEEEecc------cccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025180 29 DALLADRIN--LVEHHPVLCMEVGC------GSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 29 ~~l~~~~~~--~~~~~~~~VLDlGc------G~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
..+-++++. +.-..+.+|||+|+ ..|.. .+.+. .|+ +.|+++|+.+-.. ....+
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~----~p~g~~VVavDL~~~~s-----------da~~~ 156 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQW----LPTGTLLVDSDLNDFVS-----------DADST 156 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHH----SCTTCEEEEEESSCCBC-----------SSSEE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHh----CCCCcEEEEeeCccccc-----------CCCeE
Confidence 345555543 22246899999996 66773 23333 454 6999999988531 11256
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+++|+..... .++||+|+++..=..+.... ..........+.+++.+.+.|+|||.+++-.......
T Consensus 157 IqGD~~~~~~---~~k~DLVISDMAPNtTG~~D----------~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 157 LIGDCATVHT---ANKWDLIISDMYDPRTKHVT----------KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN 223 (344)
T ss_dssp EESCGGGEEE---SSCEEEEEECCCCTTSCSSC----------SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC
T ss_pred EEcccccccc---CCCCCEEEecCCCCcCCccc----------cchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH
Confidence 9999766433 37899999976311111100 0000122346788899999999999999865544443
Q ss_pred HHHHHHHHHcCCcEEEEE
Q 025180 180 SQICLQMMEKGYAARIVV 197 (256)
Q Consensus 180 ~~~~~~~~~~g~~~~~~~ 197 (256)
+++.+ +.+ .|......
T Consensus 224 ~~L~~-lrk-~F~~VK~f 239 (344)
T 3r24_A 224 ADLYK-LMG-HFSWWTAF 239 (344)
T ss_dssp HHHHH-HHT-TEEEEEEE
T ss_pred HHHHH-HHh-hCCeEEEE
Confidence 44444 333 55544333
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00022 Score=61.30 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=50.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+||++|.++..+++. ++.|+|||+.+-. .. +... -...++++|.....++ .++||+|+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~-~~----l~~~-~~V~~~~~d~~~~~~~--~~~~D~vv 275 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMA-QS----LMDT-GQVTWLREDGFKFRPT--RSNISWMV 275 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCC-HH----HHTT-TCEEEECSCTTTCCCC--SSCEEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcC-hh----hccC-CCeEEEeCccccccCC--CCCcCEEE
Confidence 58999999999999998877664 5699999976421 11 1111 1238888998876543 46899999
Q ss_pred ECCC
Q 025180 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 sDm~ 279 (375)
T 4auk_A 276 CDMV 279 (375)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 9764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.8e-05 Score=65.66 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=78.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|..|. ...|.+ +.+. ..+ .++.+|||+||++|.++..+++. .+-..|+|+|+...+...... +...+.
T Consensus 60 g~yrSRa-a~KL~e-i~ek-~l~--~~g~~vlDLGaaPGgWsqva~~~----~gv~sV~Gvdlg~~~~~~P~~-~~~~~~ 129 (300)
T 3eld_A 60 GISVSRG-AAKIRW-LHER-GYL--RITGRVLDLGCGRGGWSYYAAAQ----KEVMSVKGYTLGIEGHEKPIH-MQTLGW 129 (300)
T ss_dssp CCCSSTT-HHHHHH-HHHH-TSC--CCCEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTSCCCCC-CCBTTG
T ss_pred CCccchH-HHHHHH-HHHh-CCC--CCCCEEEEcCCCCCHHHHHHHHh----cCCceeeeEEecccccccccc-ccccCC
Confidence 4666664 334444 3333 222 58899999999999998777654 223468899987532110000 000011
Q ss_pred cc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEE
Q 025180 96 HA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLV 172 (256)
Q Consensus 96 ~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 172 (256)
+. .+... |+. .+....+|+|+|+..-. +.... .+ ......++..+.+.|+|| |.+++-
T Consensus 130 ~iv~~~~~~di~----~l~~~~~DlVlsD~APn-sG~~~-----~D---------~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 130 NIVKFKDKSNVF----TMPTEPSDTLLCDIGES-SSNPL-----VE---------RDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp GGEEEECSCCTT----TSCCCCCSEEEECCCCC-CSSHH-----HH---------HHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred ceEEeecCceee----ecCCCCcCEEeecCcCC-CCCHH-----HH---------HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 12 22211 222 22346899999985322 21110 00 011234588888999999 999985
Q ss_pred EeC--CCCHHHHHHHHHHc
Q 025180 173 TLT--ANDPSQICLQMMEK 189 (256)
Q Consensus 173 ~~~--~~~~~~~~~~~~~~ 189 (256)
... .....++...++..
T Consensus 191 vF~~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 191 VLAPYHPDVIEKLERLQLR 209 (300)
T ss_dssp ESSTTSHHHHHHHHHHHHH
T ss_pred eccccCccHHHHHHHHHHh
Confidence 543 33334556666554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.89 E-value=7.3e-05 Score=64.26 Aligned_cols=76 Identities=8% Similarity=0.027 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcccccC----CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE
Q 025180 25 FALVDALLADRINLVEH----HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI 100 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~----~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~ 100 (256)
.-+++.|.+.+. +... ++..|||||.|.|.+|..++.... ..+|+++|+++..+...++.. . .-+.+++
T Consensus 38 ~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~----~~~vvavE~D~~l~~~L~~~~-~-~~~l~ii 110 (353)
T 1i4w_A 38 PTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC----PRQYSLLEKRSSLYKFLNAKF-E-GSPLQIL 110 (353)
T ss_dssp HHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC----CSEEEEECCCHHHHHHHHHHT-T-TSSCEEE
T ss_pred HHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCC----CCEEEEEecCHHHHHHHHHhc-c-CCCEEEE
Confidence 556666666654 2111 468999999999999998887532 238999999999999888766 2 2234899
Q ss_pred Ecchhhc
Q 025180 101 NTDIASG 107 (256)
Q Consensus 101 ~~d~~~~ 107 (256)
.+|+.++
T Consensus 111 ~~D~l~~ 117 (353)
T 1i4w_A 111 KRDPYDW 117 (353)
T ss_dssp CSCTTCH
T ss_pred ECCccch
Confidence 9998765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=65.71 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=62.8
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+++.+. .+++..++|..||.|..+..+++.+ .+++.|+|+|.++.+++.++ ++ ..-...++++++.+.
T Consensus 46 l~Evl~~L~---i~pggiyVD~TlG~GGHS~~iL~~l---g~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l 116 (347)
T 3tka_A 46 LDEAVNGLN---IRPDGIYIDGTFGRGGHSRLILSQL---GEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSAL 116 (347)
T ss_dssp THHHHHHTC---CCTTCEEEESCCTTSHHHHHHHTTC---CTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGH
T ss_pred HHHHHHhhC---CCCCCEEEEeCcCCCHHHHHHHHhC---CCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHH
Confidence 344444443 3688999999999999987777654 46779999999999999884 33 222237888888776
Q ss_pred hhhhc----CCCccEEEECCCC
Q 025180 108 LEKRL----AGLVDVMVVNPPY 125 (256)
Q Consensus 108 ~~~~~----~~~fD~Ii~npP~ 125 (256)
..-.. .+++|.|+.|..+
T Consensus 117 ~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 117 GEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHHHHHTTCTTCEEEEEEECSC
T ss_pred HHHHHhcCCCCcccEEEECCcc
Confidence 43211 1369999996544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.81 E-value=7.7e-05 Score=63.49 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA- 176 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~- 176 (256)
.++++|..+.+....+++||+|+++|||.......-... .... -...+...+..+.++|+|||.+++.....
T Consensus 16 ~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~-~~~~------~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~ 88 (323)
T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNL-EQHE------YVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 88 (323)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSC-HHHH------HHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred eEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCc-CHHH------HHHHHHHHHHHHHHHCcCCcEEEEEECCEe
Confidence 789999988766555689999999999975432110000 0000 02246678889999999999999965432
Q ss_pred -C--------CHHHHHHHHHHcCCcE
Q 025180 177 -N--------DPSQICLQMMEKGYAA 193 (256)
Q Consensus 177 -~--------~~~~~~~~~~~~g~~~ 193 (256)
. ....+...+...||..
T Consensus 89 ~~g~~~~~~~~~~~i~~~~~~~Gf~~ 114 (323)
T 1boo_A 89 MKGVPARSIYNFRVLIRMIDEVGFFL 114 (323)
T ss_dssp ETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccccchHHHHHHHHHhCCCEE
Confidence 1 1224455667788865
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.79 E-value=4.2e-05 Score=63.04 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=59.6
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|+++|||......-. ....... -...+...+..+.++|+|+|.+++.....
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d-~~~~~~~------y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~- 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWD-SFDSHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNTPF- 77 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGG-CCSSHHH------HHHHHHHHHHHHHHHEEEEEEEEEEECHH-
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCccccc-ccCCHHH------HHHHHHHHHHHHHHHhcCCeEEEEEcCcH-
Confidence 788999988876666679999999999975411100 0000000 01245677888899999999999864322
Q ss_pred CHHHHHHHHHHcCCcE--EEEEec
Q 025180 178 DPSQICLQMMEKGYAA--RIVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~--~~~~~~ 199 (256)
....+...+.+.||.. ..++.+
T Consensus 78 ~~~~~~~~~~~~gf~~~~~iiW~K 101 (260)
T 1g60_A 78 NCAFICQYLVSKGMIFQNWITWDK 101 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECC
T ss_pred HHHHHHHHHHhhccceeEEEEEEe
Confidence 2334556677778764 344533
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.78 E-value=3.9e-05 Score=66.07 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=84.0
Q ss_pred CCCEEEEecccccHHHHHHHHH----h-------cc-cCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhc
Q 025180 42 HPVLCMEVGCGSGYVITSLALM----L-------GQ-EVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASG 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~----l-------~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~ 107 (256)
...+|+|+||++|..++.+... + .+ ..|..+|+..|+-.+....+-+.+..... ..-+..+...++
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999876654433 1 11 35778999999999988877666543111 124555554443
Q ss_pred hh-hhcCCCccEEEECCCCCCCCCccccccc-chhhhcCCC--------C---cHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 108 LE-KRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGGE--------N---GRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 108 ~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~~--------~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-. -++++++|+|+++...+..+.......+ ....+.... . ....+..+|+...+.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 22 3346899999999887776653211110 000000000 0 123566789999999999999999776
Q ss_pred CC
Q 025180 175 TA 176 (256)
Q Consensus 175 ~~ 176 (256)
+.
T Consensus 211 gr 212 (359)
T 1m6e_X 211 GR 212 (359)
T ss_dssp EC
T ss_pred cC
Confidence 44
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0006 Score=58.03 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=91.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eE-EEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QY-IATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v-~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~ 118 (256)
...+++|+.||.|.+.+.+.+. +-++ .+ .++|+++.+++..+.|... .++.+|+.+..... ....+|+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a----G~~~~~v~~a~e~d~~a~~ty~~N~~~-----~~~~~DI~~~~~~~i~~~~~Di 79 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS----SININATFIPFDINEIANKIYSKNFKE-----EVQVKNLDSISIKQIESLNCNT 79 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS----SCCCCEEEEEECCCHHHHHHHHHHHCC-----CCBCCCTTTCCHHHHHHTCCCE
T ss_pred CCCEEEEECCChhHHHHHHHHc----CCCceEEEEEEECCHHHHHHHHHHCCC-----CcccCChhhcCHHHhccCCCCE
Confidence 4579999999999988776654 2212 45 7999999999998888632 25667777664321 1237999
Q ss_pred EEECCCCCCC--CCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc--ccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025180 119 MVVNPPYVPT--PEDEVGREGIASAWAGGENGRAVIDKILPSADKLL--SKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
++..||-... +..... . . ..+.++ .....+++.+.+.+ +|. +++++.... ....+.+.+++.
T Consensus 80 l~ggpPCQ~fs~S~ag~~--~---~-~~d~r~-~L~~~~~r~~i~~~~~~P~--~~~lENV~gl~~~~~~~~i~~~l~~~ 150 (327)
T 3qv2_A 80 WFMSPPCQPYNNSIMSKH--K---D-INDPRA-KSVLHLYRDILPYLINKPK--HIFIENVPLFKESLVFKEIYNILIKN 150 (327)
T ss_dssp EEECCCCTTCSHHHHTTT--C---T-TTCGGG-HHHHHHHHTTGGGCSSCCS--EEEEEECGGGGGSHHHHHHHHHHHHT
T ss_pred EEecCCccCcccccCCCC--C---C-Cccccc-hhHHHHHHHHHHHhccCCC--EEEEEchhhhcChHHHHHHHHHHHhC
Confidence 9999997655 221100 0 0 001111 12334444244445 564 333343222 234677888888
Q ss_pred CCcEEEEEec------CCCCccEEEEEEEec
Q 025180 190 GYAARIVVQR------STEEENLHIIKFWRD 214 (256)
Q Consensus 190 g~~~~~~~~~------~~~~~~~~l~~~~~~ 214 (256)
||........ .+..++++++-.+++
T Consensus 151 GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~ 181 (327)
T 3qv2_A 151 QYYIKDIICSPIDIGIPNSRTRYYVMARLTP 181 (327)
T ss_dssp TCEEEEEEECGGGGTCSBCCCEEEEEEESSC
T ss_pred CCEEEEEEEeHHHcCCCccceEEEEEEEeCC
Confidence 9986543322 234567776665544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=58.71 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=73.8
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|..| ..+=.+++.+.. .+ +++.+|+|+||++|.++..++.. .....|+|+|+-+.-.+. ...++..|+
T Consensus 57 g~yrSR--a~~KL~ei~ek~-~l--~~g~~VvDLGaapGGWSq~~a~~----~g~~~V~avdvG~~ghe~-P~~~~s~gw 126 (267)
T 3p8z_A 57 HHAVSR--GSAKLQWFVERN-MV--IPEGRVIDLGCGRGGWSYYCAGL----KKVTEVRGYTKGGPGHEE-PVPMSTYGW 126 (267)
T ss_dssp SCCSST--HHHHHHHHHHTT-SS--CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC-CCCCCCTTT
T ss_pred CCccch--HHHHHHHHHHhc-CC--CCCCEEEEcCCCCCcHHHHHHHh----cCCCEEEEEecCCCCccC-cchhhhcCc
Confidence 345444 233334455544 22 57889999999999998766654 222379999987653321 011123456
Q ss_pred cc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 96 HA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. .+..+ |+.... +.++|.|+|+.-= .++.. +.+ ..-..+.|+.+.+.|++ |-+++
T Consensus 127 n~v~fk~gvDv~~~~----~~~~DtllcDIge-Ss~~~-----~vE---------~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 127 NIVKLMSGKDVFYLP----PEKCDTLLCDIGE-SSPSP-----TVE---------ESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp TSEEEECSCCGGGCC----CCCCSEEEECCCC-CCSCH-----HHH---------HHHHHHHHHHHGGGCSS-CEEEE
T ss_pred CceEEEeccceeecC----CccccEEEEecCC-CCCCh-----hhh---------hhHHHHHHHHHHHhccc-CCEEE
Confidence 65 88888 875542 2579999997521 11111 111 01123467777888998 55555
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=59.75 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=60.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeC--CHHHHHHHHHHHHHcCCcc-eEEEc-chhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDI--NPYAVEVTRKTLEAHNVHA-DLINT-DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~--~~~~i~~a~~~~~~~~~~~-~~~~~-d~~~~~~~~~~~~ 115 (256)
+++.+|+|+||+.|.++..+++...- .. .+.++|+|+ .|-... ..++.. .+.++ |+.+. ....
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~v-g~V~G~vig~D~~~~P~~~~-------~~Gv~~i~~~~G~Df~~~----~~~~ 139 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNV-QEVRGYTKGGPGHEEPMLMQ-------SYGWNIVTMKSGVDVFYK----PSEI 139 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTE-EEEEEECCCSTTSCCCCCCC-------STTGGGEEEECSCCGGGS----CCCC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCC-CCceeEEEccccccCCCccc-------CCCceEEEeeccCCccCC----CCCC
Confidence 68999999999999998777664110 01 124555552 111000 012222 44446 88773 2357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~ 174 (256)
+|+|+|+..=. +.... .+. ...+ .+++.+.+.|+||| .+++-..
T Consensus 140 ~DvVLSDMAPn-SG~~~-----vD~--------~Rs~-~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 140 SDTLLCDIGES-SPSAE-----IEE--------QRTL-RILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSEEEECCCCC-CSCHH-----HHH--------HHHH-HHHHHHHHHHTTCCSEEEEEES
T ss_pred CCEEEeCCCCC-CCccH-----HHH--------HHHH-HHHHHHHHHhhcCCcEEEEEEC
Confidence 99999986312 21110 000 0012 26777889999999 7776443
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00041 Score=58.91 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred eEE-EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 98 DLI-NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 ~~~-~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.++ ++|..+.+....+++||+|+++|||....+. |.....-...+...+..+.++|+|||.+++.....
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~----------~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----------WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----------GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCC----------ccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 788 9999988766556799999999999754110 11111112346677888999999999999865432
Q ss_pred CC-------HHHHHHHHHHcC-CcE--EEEEec
Q 025180 177 ND-------PSQICLQMMEKG-YAA--RIVVQR 199 (256)
Q Consensus 177 ~~-------~~~~~~~~~~~g-~~~--~~~~~~ 199 (256)
.. ...+...+...| |.. ..++.+
T Consensus 110 ~~~~~~~~~l~~l~~~i~~~G~~~~~~~IIW~K 142 (319)
T 1eg2_A 110 YQGEAGSGDLISIISHMRQNSKMLLANLIIWNY 142 (319)
T ss_dssp CCCCTTBCCHHHHHHHHHHHCCCEEEEEEEEEC
T ss_pred cccccccccHHHHHHHHhCcccceeEEEEEEEC
Confidence 22 145555555555 553 445543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0009 Score=62.70 Aligned_cols=135 Identities=16% Similarity=0.263 Sum_probs=88.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc---cCC-----CceEEEEeCCHHHHHHHHH--------------HHHHc-----
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQ---EVP-----GVQYIATDINPYAVEVTRK--------------TLEAH----- 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~---~~~-----~~~v~giD~~~~~i~~a~~--------------~~~~~----- 93 (256)
++.-+|+|+|.|+|...+.+.+...+ ..| ..+++++|..|...+.+++ .+...
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 45679999999999998888775421 112 2579999995433333322 11111
Q ss_pred C----------CcceEEEcchhhchhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 94 N----------VHADLINTDIASGLEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 94 ~----------~~~~~~~~d~~~~~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+ +..++..+|+.+.++... ...+|+++.++ |.+.-+++ .| ...++..+.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~~np~--------~w---------~~~~~~~l~ 198 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPAKNPD--------MW---------NEQLFNAMA 198 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC--CCT--------TC---------SHHHHHHHH
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCCCChh--------hh---------hHHHHHHHH
Confidence 1 122688899988876542 46899999976 32222211 11 367888999
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+++++||.+.. +.....+++.+.+.||......
T Consensus 199 ~~~~~g~~~~t----~~~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 199 RMTRPGGTFST----FTAAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp HHEEEEEEEEE----SCCCHHHHHHHHHTTCEEEEEE
T ss_pred HHhCCCCEEEe----ccCcHHHHHHHHhCCeEEEecc
Confidence 99999998775 3345788999999999876554
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0028 Score=53.99 Aligned_cols=153 Identities=13% Similarity=0.048 Sum_probs=92.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh-cCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR-LAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~fD~Ii~ 121 (256)
-+++|+.||.|.+.+.+... +.+ -.+.++|+++.+++..+.|.. ...++.+|+.+..... ....+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~a----G~~~~~v~a~e~d~~a~~ty~~N~~----~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES----GLDGEIVAAVDINTVANSVYKHNFP----ETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHc----CCCceEEEEEeCCHHHHHHHHHhCC----CCceeccccccCCHHHhccCCCCEEEe
Confidence 57999999999988777665 222 258899999999988877753 2256778887764322 2246999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeCCC-----CHHHHHHHHHHcCCcEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLTAN-----DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~~~ 195 (256)
.||-...+....... . .+.++ ..+..+++- .+.++ |. +++++.... ..+.+.+.+++.||.+..
T Consensus 76 gpPCQ~fS~ag~~~~-----~-~d~r~-~L~~~~~r~-i~~~~~P~--~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~ 145 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLD-----D-NDPRT-NSFLYLIGI-LDQLDNVD--YILMENVKGFENSTVRNLFIDKLKECNFIYQE 145 (333)
T ss_dssp CCCCCCSEETTEECC-----T-TCTTS-CCHHHHHHH-GGGCTTCC--EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred cCCCcchhhhhhccC-----C-cCccc-ccHHHHHHH-HHHhcCCC--EEEEecchhhhhhhHHHHHHHHHHhCCCeEEE
Confidence 999876554321100 0 11111 012334433 33454 64 333344332 235678888888987654
Q ss_pred EEec------CCCCccEEEEEEEec
Q 025180 196 VVQR------STEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~~~------~~~~~~~~l~~~~~~ 214 (256)
.... .+..++++++-.+++
T Consensus 146 ~vl~a~~~GvPQ~R~R~fiva~r~~ 170 (333)
T 4h0n_A 146 FLLCPSTVGVPNSRLRYYCTARRNN 170 (333)
T ss_dssp EEECTTTTTCSCCCCEEEEEEEETT
T ss_pred EEecHHHcCCCccceEEEEEEEeCC
Confidence 3322 234577777766655
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0026 Score=53.97 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=90.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+.+.+.+. +-+ .+.++|+++.+++.-+.|. +..++.+|+.+..... -..+|+++..||
T Consensus 2 kvidLFsG~GG~~~G~~~a----G~~-~v~a~e~d~~a~~ty~~N~-----~~~~~~~DI~~i~~~~-~~~~D~l~ggpP 70 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA----GFR-IICANEYDKSIWKTYESNH-----SAKLIKGDISKISSDE-FPKCDGIIGGPP 70 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT----TCE-EEEEEECCTTTHHHHHHHC-----CSEEEESCGGGCCGGG-SCCCSEEECCCC
T ss_pred eEEEeCcCccHHHHHHHHC----CCE-EEEEEeCCHHHHHHHHHHC-----CCCcccCChhhCCHhh-CCcccEEEecCC
Confidence 6999999999988766554 222 5789999999998877764 3478889998875432 246999999998
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
--..+...... -..++++ ..+..+++ +.+.++|.-.++ +.... ....+.+.+.+.||.+...
T Consensus 71 CQ~fS~ag~~~------g~~d~R~-~L~~~~~r-~i~~~~Pk~~~~--ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 140 (331)
T 3ubt_Y 71 SQSWSEGGSLR------GIDDPRG-KLFYEYIR-ILKQKKPIFFLA--ENVKGMMAQRHNKAVQEFIQEFDNAGYDVHII 140 (331)
T ss_dssp GGGTEETTEEC------CTTCGGG-HHHHHHHH-HHHHHCCSEEEE--EECCGGGGCTTSHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCcCCCCCcc------CCCCchh-HHHHHHHH-HHhccCCeEEEe--eeecccccccccchhhhhhhhhccCCcEEEEE
Confidence 76544322110 0011111 22334443 344578863332 43221 2346677788889876443
Q ss_pred Eec------CCCCccEEEEEEEec
Q 025180 197 VQR------STEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~~------~~~~~~~~l~~~~~~ 214 (256)
... .+...+++++-.+++
T Consensus 141 vlna~~yGvPQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 141 LLNANDYGVAQDRKRVFYIGFRKE 164 (331)
T ss_dssp EEEGGGTTCSBCCEEEEEEEEEGG
T ss_pred ecccccCCCCcccceEEEEEEcCC
Confidence 321 244577777766654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00057 Score=56.63 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=71.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.|..|. .+=.+++.+... + +++.+|||+||++|.++..++.. ..-..|+|+|+-..-.+.- ..++..++
T Consensus 73 g~y~SR~--~~KL~ei~~~~~-l--~~~~~VlDLGaapGGwsq~~~~~----~gv~~V~avdvG~~~he~P-~~~~ql~w 142 (321)
T 3lkz_A 73 GHPVSRG--TAKLRWLVERRF-L--EPVGKVIDLGCGRGGWCYYMATQ----KRVQEVRGYTKGGPGHEEP-QLVQSYGW 142 (321)
T ss_dssp CCCSSTH--HHHHHHHHHTTS-C--CCCEEEEEETCTTCHHHHHHTTC----TTEEEEEEECCCSTTSCCC-CCCCBTTG
T ss_pred CCccchH--HHHHHHHHHhcC-C--CCCCEEEEeCCCCCcHHHHHHhh----cCCCEEEEEEcCCCCccCc-chhhhcCC
Confidence 3455542 333344444432 2 57789999999999997655544 2223699999876522100 00012233
Q ss_pred cc-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEE
Q 025180 96 HA-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYL 171 (256)
Q Consensus 96 ~~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~ 171 (256)
+. .++.+ |+....+ ..+|+|+|+.- -.++.+. .+ ..-....|+.+.+.|++| |-+++
T Consensus 143 ~lV~~~~~~Dv~~l~~----~~~D~ivcDig-eSs~~~~-----ve---------~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 143 NIVTMKSGVDVFYRPS----ECCDTLLCDIG-ESSSSAE-----VE---------EHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp GGEEEECSCCTTSSCC----CCCSEEEECCC-CCCSCHH-----HH---------HHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEeccCHhhCCC----CCCCEEEEECc-cCCCChh-----hh---------hhHHHHHHHHHHHHhccCCCcEEE
Confidence 33 66666 7655422 57999999865 1111111 01 011234677778889988 76666
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=64.19 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..|++.++... ..++..|||+.||+|..++++.++ +...+|+|+++..++.+++++...+.....++.|+
T Consensus 239 ~~l~~~~i~~~----~~~~~~VlDpF~GsGtt~~aa~~~------gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~ 308 (323)
T 1boo_A 239 AKLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDNNISEEKITDIY 308 (323)
T ss_dssp THHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 44555555443 368999999999999998877665 34899999999999999998876655545555666
Q ss_pred hhc
Q 025180 105 ASG 107 (256)
Q Consensus 105 ~~~ 107 (256)
.+.
T Consensus 309 ~~i 311 (323)
T 1boo_A 309 NRI 311 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=61.85 Aligned_cols=135 Identities=16% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc--------cCCCceEEEEeC---CHHHHHHHHH-----------HHHHcC----
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQ--------EVPGVQYIATDI---NPYAVEVTRK-----------TLEAHN---- 94 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~--------~~~~~~v~giD~---~~~~i~~a~~-----------~~~~~~---- 94 (256)
++.-+|+|+|-|+|...+...+...+ ......++++|. +.+.+..+-. ......
T Consensus 65 ~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 65 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 34579999999999988877765421 112356999998 6666653321 122211
Q ss_pred -----------CcceEEEcchhhchhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 95 -----------VHADLINTDIASGLEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 95 -----------~~~~~~~~d~~~~~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+..++..+|+.+.++... ...||+++.++ |.+..+++ .| ...++..+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~--------~w---------~~~~~~~l~ 206 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPD--------MW---------TQNLFNAMA 206 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGG--------GS---------CHHHHHHHH
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChh--------hh---------hHHHHHHHH
Confidence 111577788888776542 46799999976 32221111 12 367889999
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++|||.+.. +.....+++.+.+.||......
T Consensus 207 ~~~~~g~~~~t----~~~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 207 RLARPGGTLAT----FTSAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp HHEEEEEEEEE----SCCCHHHHHHHHHHTCEEEEEE
T ss_pred HHhCCCCEEEe----ccCcHHHHHHHHhCCeEEEecc
Confidence 99999999875 3345688999999999866543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00052 Score=57.57 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc--CCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL--AGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD 117 (256)
....+|+|+.||.|.+.+.+.+. +-... +.++|+++.+++..+.|.. ...++.+|+.+...... ...+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a----G~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL----GIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT----TBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHHHHHHTCCCS
T ss_pred CCCCEEEEeCcCccHHHHHHHHC----CCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHHHhcccCCcC
Confidence 46679999999999988776664 33333 6999999999887777642 22578889887653221 24799
Q ss_pred EEEECCCCCCCCC
Q 025180 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
+++..||....+.
T Consensus 86 ll~ggpPCQ~fS~ 98 (295)
T 2qrv_A 86 LVIGGSPCNDLSI 98 (295)
T ss_dssp EEEECCCCGGGBT
T ss_pred EEEecCCCccccc
Confidence 9999999876554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00093 Score=56.68 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=48.4
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcC
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHN 94 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~ 94 (256)
|..=...|++.++... ..++..|||+.||+|..++++.++ +...+|+|+++ ..++.+++++...+
T Consensus 224 ~~~kp~~l~~~~i~~~----~~~~~~vlDpF~GsGtt~~aa~~~------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 224 PTQKPAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp TTCCCHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHh----CCCCCEEEecCCCCCHHHHHHHHc------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3333456667666654 368999999999999998887776 34899999999 99999999876443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0028 Score=54.67 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=63.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 115 (256)
+++.+||-+|+|. |..++.+++.+ ++ .|+++|.+++..+.+++. |.+ .++.. |+.+.......+.
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~~~~~~~~~~~~~gg 258 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVC-----GASIIIAVDIVESRLELAKQL----GAT-HVINSKTQDPVAAIKEITDGG 258 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHHc----CCC-EEecCCccCHHHHHHHhcCCC
Confidence 5789999999875 66666666653 34 699999999988887643 433 22222 2222222222347
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.-. ....+..+.+.|+++|+++++.
T Consensus 259 ~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 259 VNFALESTG---------------------------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEEEEECSC---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEeC
Confidence 999987422 1355778889999999998854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0038 Score=53.08 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=63.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+++.+||-.|+|. |..++.+++.+ +++|+++|.+++..+.+++ .|.+ .++. .|+.+.... ..+.+
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~~-~~g~~ 233 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-----GLRVAAVDIDDAKLNLARR----LGAE-VAVNARDTDPAAWLQK-EIGGA 233 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHH-HHSSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHHHHH----cCCC-EEEeCCCcCHHHHHHH-hCCCC
Confidence 6889999999864 66666666652 5699999999998887754 3433 2222 122222222 12479
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.+-. ....++.+.+.|+++|+++++.
T Consensus 234 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 234 HGVLVTAV---------------------------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CEEEEeCC---------------------------CHHHHHHHHHHhccCCEEEEeC
Confidence 99987422 1456788888999999998853
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.012 Score=50.30 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=61.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc------chhhchhhhc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT------DIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~------d~~~~~~~~~ 112 (256)
+++.+||-.|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. +..+......
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAM-----GAAQVVVTDLSATRLSKAKE----IGAD-LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH----TTCS-EEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHH----hCCC-EEEcCcccccchHHHHHHHHh
Confidence 5789999999764 55555555542 45 89999999988887754 3443 23322 2222222211
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+-.-. ....+..+.++|+++|+++++.
T Consensus 240 ~~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTG---------------------------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEEe
Confidence 256999987422 1345677888999999998854
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.076 Score=46.32 Aligned_cols=166 Identities=10% Similarity=-0.014 Sum_probs=91.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCc---eEEEEeCCHHHHHHHHHHHHHcCCc--c--------------------
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGV---QYIATDINPYAVEVTRKTLEAHNVH--A-------------------- 97 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~---~v~giD~~~~~i~~a~~~~~~~~~~--~-------------------- 97 (256)
..+|+|+.||.|.....+.+.... -++ .|.++|+++.+++.-+.|....... .
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~--~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~ 87 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARS--KNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEY 87 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHH--HTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHH
T ss_pred cceEEEEecCcCHHHHHHHHhCCc--cccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhcccccccccccc
Confidence 469999999999988777665210 011 2888999999999888876432100 0
Q ss_pred -----------eE---------EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025180 98 -----------DL---------INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 98 -----------~~---------~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
.+ ..+|+.+......++.+|+++..||-...+........... .+.++ ..+..+++
T Consensus 88 ~i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip~~vDll~ggpPCQ~fS~ag~~~g~~d~---~~~r~-~L~~~~~r 163 (403)
T 4dkj_A 88 GIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKE---LNTRS-GLLWEIER 163 (403)
T ss_dssp HHHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSCSSCSEEEECCCCTTTCTTSCCCCCCGG---GCCSG-GGHHHHHH
T ss_pred ccccccHHHHHHHHhhcccCCCcccchhhcCHhhCCCCCcEEEEeCCCCCHHHhCCCCCCCcc---ccccc-hhHHHHHH
Confidence 00 23666665443334568999999997665543211000000 00111 11233333
Q ss_pred HHhh-------ccccCeEEEEEEeCCCC------HHHHHHHHHHcCCcEEEEEec------CCCCccEEEEEEEec
Q 025180 158 SADK-------LLSKRGWLYLVTLTAND------PSQICLQMMEKGYAARIVVQR------STEEENLHIIKFWRD 214 (256)
Q Consensus 158 ~~~~-------~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~l~~~~~~ 214 (256)
-+.. .++|.-+++=..+.... ...+.+.+.+.||.+...... .+..++++++..+++
T Consensus 164 ii~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~ 239 (403)
T 4dkj_A 164 ILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD 239 (403)
T ss_dssp HHHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH
T ss_pred HHHHhhhhhccccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC
Confidence 3332 26775433322222222 236677788889876443321 234577777776655
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0061 Score=52.59 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=62.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhh---hc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEK---RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~---~~ 112 (256)
+++.+||=.|+|. |..++.+++.+ ++ .|+++|.+++..+.+++ .|.+ .++ ..|+.+.... ..
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLA-----GATTVILSTRQATKRRLAEE----VGAT-ATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCHHHHHHHHH----HTCS-EEECTTSSCHHHHHHSTTSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHH----cCCC-EEECCCCcCHHHHHHhhhhcc
Confidence 5789999998753 55555555542 44 89999999998887765 3433 222 2233333222 22
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.+|+|+-.-. ....+..+.++|+++|+++++.
T Consensus 251 ~gg~Dvvid~~G---------------------------~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 251 PGGVDVVIECAG---------------------------VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TTCEEEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEEe
Confidence 347999987421 1356788888999999999854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.031 Score=48.28 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=79.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+||.++.+.|.++..++.. .++.+.-|--....++.|+..|++.. .+...+..+. ....+|+|+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~--------~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~----~~~~~~~v~ 105 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH--------KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD----YPQQPGVVL 105 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG--------CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTSC----CCSSCSEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC--------CceEEEhHHHHHHHHHHHHHHcCCCccceEecccccc----cccCCCEEE
Confidence 4578999999999987655432 34555446666678889999999875 3444443332 246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
...|- ....+...+..+...|++|+.+++..........+.+.+.+.
T Consensus 106 ~~lpk----------------------~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 106 IKVPK----------------------TLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp EECCS----------------------CHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred EEcCC----------------------CHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 86651 234467778899999999999988766554455666677665
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0083 Score=52.59 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=41.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.++..|+|+|++.|..++.++... .+ .++|+++|.+|..++.+++|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~---~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVT---KGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHH---TSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHh---cCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 578999999999999998877322 33 36999999999999999999988
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.16 Score=49.34 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-----------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE----------- 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~----------- 109 (256)
....+++|+.||.|.+++.+.+. +-.-.+.++|+++.+++.-+.|.. ...++.+|+.+...
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~A----G~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~~di~~~~ 609 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQA----GISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDCNILLKLVMAGETTNSR 609 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHH----TSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred CCCCeEEEeccCccHHHHHHHHC----CCCceEEEEECCHHHHHHHHHhCC----CCccccccHHHHhhhccchhhhhhh
Confidence 45579999999999988777665 211158899999999887776642 23566677654310
Q ss_pred --hh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHH
Q 025180 110 --KR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPS 180 (256)
Q Consensus 110 --~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~ 180 (256)
.. ..+.+|+|+..||--..+....... ....+ ..+ ..+..+++ +.+.++|.-+++=..++.. ...
T Consensus 610 ~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~---~~~~d-~R~-~L~~~~~r-iv~~~rPk~~llENV~glls~~~~~~~~ 683 (1002)
T 3swr_A 610 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNS---RTYSK-FKN-SLVVSFLS-YCDYYRPRFFLLENVRNFVSFKRSMVLK 683 (1002)
T ss_dssp CCBCCCTTTCSEEEECCCCTTCCSSSCCCH---HHHHH-HTT-SHHHHHHH-HHHHHCCSEEEEEEEGGGGTTGGGHHHH
T ss_pred hhhcccCCCeeEEEEcCCCcchhhhCCCCC---Ccccc-hhh-HHHHHHHH-HHHHhCCCEEEEeccHHHhccCcchHHH
Confidence 01 1246999999999776654321100 00000 000 11233333 3345677644432222221 123
Q ss_pred HHHHHHHHcCCcEEEEEec------CCCCccEEEEEEEe
Q 025180 181 QICLQMMEKGYAARIVVQR------STEEENLHIIKFWR 213 (256)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~------~~~~~~~~l~~~~~ 213 (256)
.+...|.+.||.+...... .+...+++++-.++
T Consensus 684 ~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~ 722 (1002)
T 3swr_A 684 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 722 (1002)
T ss_dssp HHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECT
T ss_pred HHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeC
Confidence 5677778889886543321 23456666665544
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=49.25 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=60.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch-hhchhhhc-CCCccE
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-ASGLEKRL-AGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~-~~~fD~ 118 (256)
++.+||-+|+|. |..++.+++.+ +|+++|+++|.+++..+.+++ .|.+ .++..+- .+...... ...+|+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~---~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~g~g~D~ 241 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKAL---MKNITIVGISRSKKHRDFALE----LGAD-YVSEMKDAESLINKLTDGLGASI 241 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHH---CTTCEEEEECSCHHHHHHHHH----HTCS-EEECHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh---cCCCEEEEEeCCHHHHHHHHH----hCCC-EEeccccchHHHHHhhcCCCccE
Confidence 689999999853 44544444442 346789999999998887765 3432 2222111 11111211 237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+-.-. ....+..+.+.|+++|+++++.
T Consensus 242 vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 242 AIDLVG---------------------------TEETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC---------------------------ChHHHHHHHHHhhcCCEEEEeC
Confidence 987422 1345777888999999998754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.04 Score=49.20 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=87.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh------------
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK------------ 110 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~------------ 110 (256)
.-+++|+.||.|.+.+.+.+. +.. .+.++|+++.+++.-+.|.... ....++.+|+.+....
T Consensus 88 ~~~viDLFaG~GGlslG~~~a----G~~-~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~~~ 161 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI----GGQ-CVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAAAE 161 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT----TEE-EEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC----CCE-EEEEEeCCHHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhHHh
Confidence 479999999999987666543 211 4899999999988777764211 1226778888776421
Q ss_pred ---hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------C
Q 025180 111 ---RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------D 178 (256)
Q Consensus 111 ---~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~ 178 (256)
.....+|+|+..||.-..+......... ...+.++..+ ..+..+++-+ +.++|.-+++=..+... .
T Consensus 162 ~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~-~Lf~e~~riI-~~~rPk~fvlENV~gl~s~~~g~~ 239 (482)
T 3me5_A 162 HIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQG-TLFFDVVRII-DARRPAMFVLENVKNLKSHDKGKT 239 (482)
T ss_dssp HHHHHSCCCSEEEEECCCCCC------------------CTTTT-SHHHHHHHHH-HHHCCSEEEEEEETTTTTGGGGHH
T ss_pred hhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccc-cHHHHHHHHH-HHcCCcEEEEeCcHHHhcccCCcH
Confidence 0124689999999977665432111000 0011111111 1233344333 34677533332222221 1
Q ss_pred HHHHHHHHHHcCCcEE-----------EEEe---cCCCCccEEEEEEEec
Q 025180 179 PSQICLQMMEKGYAAR-----------IVVQ---RSTEEENLHIIKFWRD 214 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~-----------~~~~---~~~~~~~~~l~~~~~~ 214 (256)
...+.+.|.+.||.+. .+.. ..+..++++++-.+++
T Consensus 240 f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~ 289 (482)
T 3me5_A 240 FRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRD 289 (482)
T ss_dssp HHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGG
T ss_pred HHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecC
Confidence 2356777788887653 1111 2345677777766654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0053 Score=53.46 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-hhchhhhcCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DI-ASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~-~~~~~~~~~~ 114 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++.++.+++ .|. +++.. |. .+.......+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa--~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLL-----GAACVIVGDQNPERLKLLSD----AGF--ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEEESCHHHHHHHHT----TTC--EEEETTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHH----cCC--cEEcCCCcchHHHHHHHHhCC
Confidence 5789999999865 66666666653 35 89999999998887653 344 23321 22 2222222223
Q ss_pred -CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 -LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 -~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-.-...... ....+ .. ....+..+.++|+++|+++++.
T Consensus 253 ~g~Dvvid~~g~~~~~~~------~~~~~---~~----~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 253 PEVDCGVDAVGFEAHGLG------DEANT---ET----PNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp SCEEEEEECSCTTCBCSG------GGTTS---BC----TTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCCEEEECCCCcccccc------ccccc---cc----cHHHHHHHHHHHhcCCEEEEec
Confidence 69999874221000000 00000 00 0135777888999999998754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.01 Score=46.13 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=56.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~f 116 (256)
+++++||..|++. .++..+++.+... +++|+++|.+++..+.+++ .+.. .+.. .+..+...... ...+
T Consensus 37 ~~g~~vlV~Ga~g-giG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 37 SPGERVLIHSATG-GVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE-YVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CTTCEEEETTTTS-HHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS-EEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeeCCC-hHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC-EEeeCCcHHHHHHHHHHhCCCCC
Confidence 5789999998532 2333344433322 4689999999887766543 3432 2221 12212211111 2469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 109 D~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 109 DVVLNSLA----------------------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEECCC----------------------------THHHHHHHHTEEEEEEEEECS
T ss_pred eEEEECCc----------------------------hHHHHHHHHHhccCCEEEEEc
Confidence 99987521 134677788999999998853
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=49.40 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhc---
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRL--- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~--- 112 (256)
+++.+||-.|+|. |..++.+++. .++.|+++|.+++..+.+++ .|.+ .++. .+..+......
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKA-----YGAFVVCTARSPRRLEVAKN----CGAD-VTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHH----TTCS-EEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEcCCHHHHHHHHH----hCCC-EEEcCcccccHHHHHHHHhccc
Confidence 5789999999753 4454444443 25679999999998887753 3443 2222 12222222211
Q ss_pred -CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 -AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+-+-. ....+..+.+.|+++|+++++.
T Consensus 237 ~g~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 237 IGDLPNVTIDCSG---------------------------NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCCCCEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 246999987532 1345777888999999998854
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.015 Score=49.52 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc--chhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT--DIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~-~~~f 116 (256)
+++.+||=.|+|. |..++.+++.+ .+++|+++|.+++..+.+++ .|.+. ++.. +..+...... ...+
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~----g~~~Vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAV----SAARVIAVDLDDDRLALARE----VGADA-AVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH----CCCEEEEEESCHHHHHHHHH----TTCSE-EEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCHHHHHHHHH----cCCCE-EEcCCCcHHHHHHHHhCCCCC
Confidence 5789999999864 56666666553 25699999999998887764 34432 2221 2222222221 2379
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. -...+..+.+.|+++|+++++.
T Consensus 241 d~v~d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVG---------------------------AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEC
Confidence 99987422 1346788889999999999854
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.016 Score=49.06 Aligned_cols=97 Identities=9% Similarity=0.060 Sum_probs=58.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~f 116 (256)
+++++||-.|++. .++..+++.+.. .+++|+++|.+++..+.+++ .+.. .++. .++.+.......+.+
T Consensus 144 ~~g~~vlV~Ga~g-giG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 144 KGGETVLVSAAAG-AVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQ----IGFD-AAFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CSSCEEEEESTTB-HHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEecCCC-cHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cCCc-EEEecCCHHHHHHHHHHHhCCCC
Confidence 5789999999732 233334443332 35699999999988777632 2332 1211 122222222223579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 216 d~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVG----------------------------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSC----------------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCC----------------------------hHHHHHHHHHHhcCCEEEEEe
Confidence 99988621 134677788999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0078 Score=51.44 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcC-C
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLA-G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~-~ 114 (256)
+++.+||=.|+|. |..++.+++. .++ .|+++|.+++..+.+++. |.+ .++. .|+.+....... .
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~~Vi~~~~~~~~~~~~~~l----Ga~-~vi~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANH-----LGAGRIFAVGSRKHCCDIALEY----GAT-DIINYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT-----TTCSSEEEECCCHHHHHHHHHH----TCC-EEECGGGSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHh----CCc-eEEcCCCcCHHHHHHHHcCCC
Confidence 5789999998753 4444444443 245 799999999988877653 433 2222 233333322222 3
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-. -...+..+.+.|+++|+++++.
T Consensus 235 g~D~v~d~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 235 GVDKVVIAGG---------------------------DVHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp CEEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEec
Confidence 6999987321 1244777888999999999754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.026 Score=48.51 Aligned_cols=96 Identities=25% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHS-----AGAKRIIAVDLNPDKFEKAKV----FGAT-DFVNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCGGGHHHHHH----TTCC-EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCCHHHHHHHHH----hCCc-eEEeccccchhHHHHHHHHhC
Confidence 5789999999753 4454445444 245 79999999988887754 3433 22211 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.++|+++ |+++++.
T Consensus 261 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 261 GGVDFSLECVG---------------------------NVGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCcEEEEEc
Confidence 47999987422 134577888899999 9998754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.03 Score=48.10 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-+|+|. |..++.+++.+ ++ +|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAA-----GASRIIGVGTHKDKFPKAIE----LGAT-ECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhC
Confidence 5789999999753 45555555543 44 79999999988887754 3443 22221 23222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.++|+++ |+++++.
T Consensus 260 gg~Dvvid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 260 GGVDYAVECAG---------------------------RIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHHhcCCCEEEEEc
Confidence 47999987421 135577888899999 9998754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.08 Score=43.20 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHh---cccCCCceEEEEe-----CCHH-------------------HHHHHHHHH---
Q 025180 41 HHPVLCMEVGCGSGYVITSLALML---GQEVPGVQYIATD-----INPY-------------------AVEVTRKTL--- 90 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l---~~~~~~~~v~giD-----~~~~-------------------~i~~a~~~~--- 90 (256)
.-++.|+|.||-.|.-++.++.+. ....++.+|+++| ..+. ..+..++.+
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 356799999999999877766542 2223556899999 2210 011122211
Q ss_pred ---HHcCC---cceEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025180 91 ---EAHNV---HADLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 91 ---~~~~~---~~~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
...+. +.+++.+++.+.++.+ ...+||++..+.-. -......++.+.
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----------------------Y~~t~~~le~~~ 204 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----------------------YEPTKAVLEAIR 204 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----------------------HHHHHHHHHHHG
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----------------------cchHHHHHHHHH
Confidence 12232 2399999999887653 23579999886311 122456788899
Q ss_pred hccccCeEEEE
Q 025180 161 KLLSKRGWLYL 171 (256)
Q Consensus 161 ~~LkpgG~l~~ 171 (256)
..|+|||++++
T Consensus 205 p~l~~GGvIv~ 215 (257)
T 3tos_A 205 PYLTKGSIVAF 215 (257)
T ss_dssp GGEEEEEEEEE
T ss_pred HHhCCCcEEEE
Confidence 99999999998
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.014 Score=49.75 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .+.. .++. .++.+.......+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~-----~Ga~V~~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKA-----MGYRVLGIDGGEGKEELFRS----IGGE-VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEECSTTHHHHHHH----TTCC-EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCCcEEEEcCCHHHHHHHHH----cCCc-eEEecCccHhHHHHHHHHhCC
Confidence 57899999997 344444444433 25699999998887766654 3432 2221 1222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ....++.+.+.|+++|+++.+.
T Consensus 238 ~~D~vi~~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 238 GAHGVINVSV---------------------------SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp CEEEEEECSS---------------------------CHHHHHHHTTSEEEEEEEEECC
T ss_pred CCCEEEECCC---------------------------cHHHHHHHHHHHhcCCEEEEEe
Confidence 7999988532 1356788889999999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=48.58 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++++||-.|+ |.|...+.+++. .+++|++++.+++..+.+.+ ..+.. .++. .++.+.......+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARL-----KGCRVVGIAGGAEKCRFLVE---ELGFD-GAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH---TTCCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH---HcCCC-EEEECCCHHHHHHHHHhcCCC
Confidence 57899999998 345555444443 35699999999988777632 23432 2222 22222222222357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 219 ~d~vi~~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 219 IDVFFDNVG----------------------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEEEESSC----------------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred ceEEEECCC----------------------------cchHHHHHHHHhhCCEEEEEe
Confidence 999987521 135778888999999999854
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.024 Score=48.14 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=60.0
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+++.+||-.|+| .|...+.+++. .+++|+++|.+++..+.+++ .+.+ .++. .|+.+...... +.+
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKA-----MGLNVVAVDIGDEKLELAKE----LGAD-LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCHHHHHHHHH----TTCS-EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----CCCC-EEecCCCccHHHHHHHHh-CCC
Confidence 578999999985 24444444443 25699999999998887753 3432 2221 12222222212 479
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.+-. ....++.+.++|+++|+++++.
T Consensus 232 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 232 HAAVVTAV---------------------------SKPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EEEEESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 99987522 1245777888999999998754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.038 Score=47.47 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKA-----AGAARIIGVDINKDKFAKAKE----VGAT-ECVNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHHHH----hCCc-eEecccccchhHHHHHHHHhC
Confidence 5789999999753 4444444444 245 79999999988887753 3433 22221 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 260 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 260 GGVDFSFEVIG---------------------------RLDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCcEEEECCC---------------------------CHHHHHHHHHHhhcCCcEEEEec
Confidence 47999987421 134577888899999 9998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.22 Score=36.18 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=69.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
..+|+=+|| |.++..+++.|.+. +..|+++|.+++.++.+++ .+ ..++.+|..+.. ....-..+|+++
T Consensus 7 ~~~viIiG~--G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~g--~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGY--GRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----RG--VRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----TT--CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECc--CHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----cC--CCEEECCCCCHHHHHhcCcccCCEEE
Confidence 457777776 56666677777643 5689999999998887654 22 367888876542 121124789998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+..|- +.....+-...+.+.|+..++.... .....+.+.+.|....
T Consensus 77 ~~~~~------------------------~~~n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 77 LTIPN------------------------GYEAGEIVASARAKNPDIEIIARAH----YDDEVAYITERGANQV 122 (140)
T ss_dssp ECCSC------------------------HHHHHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCSEE
T ss_pred EECCC------------------------hHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCCEE
Confidence 75331 0112223334556778887665332 2344567777776543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.019 Score=49.16 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEE-----Ecchhhchhhhc-
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLI-----NTDIASGLEKRL- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~-----~~d~~~~~~~~~- 112 (256)
+++.+||=.|+|. |..++.+++.+ ++. |+++|.+++..+.+++. ...-+ ... ..|+.+......
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~l-~~~~~--~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAA-----GACPLVITDIDEGRLKFAKEI-CPEVV--THKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHT-----TCCSEEEEESCHHHHHHHHHH-CTTCE--EEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHh-chhcc--cccccccchHHHHHHHHHHhC
Confidence 5788999998753 55555555542 455 99999999999988764 21100 111 123333222222
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...+|+|+-.-. -...+..+.++|+++|+++++.
T Consensus 250 g~g~Dvvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 250 GIEPAVALECTG---------------------------VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp SCCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECC
T ss_pred CCCCCEEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEEc
Confidence 347999987421 1345778888999999999864
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.015 Score=50.07 Aligned_cols=96 Identities=22% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~ 113 (256)
+++.+||-.|+|. |..++.+++.+ ++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~-----Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVA-----GASRIIGVDINKDKFARAKE----FGAT-ECINPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHHHHH----HTCS-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----cCCc-eEeccccccccHHHHHHHHhC
Confidence 5789999999753 44555555442 45 79999999988887764 3433 22211 22222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|+++ |+++++.
T Consensus 259 ~g~D~vid~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 259 GGVDYSFECIG---------------------------NVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------cHHHHHHHHHhhccCCcEEEEEe
Confidence 47999987421 134577888899999 9998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.017 Score=49.13 Aligned_cols=99 Identities=23% Similarity=0.266 Sum_probs=60.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~f 116 (256)
+++++||-.|+|+| ++..+++.+... .+++|+++|.+++..+.+++ .+.+ .++.. +..+....... +.+
T Consensus 169 ~~g~~vlV~Gagg~-iG~~~~~~a~~~-~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 169 DPTKTLLVVGAGGG-LGTMAVQIAKAV-SGATIIGVDVREEAVEAAKR----AGAD-YVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCcc-HHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCC-EEecCCCccHHHHHHHHhcCCCc
Confidence 57899999998633 233333333321 25689999999988887754 2332 22211 11111222222 479
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ....+..+.+.|+++|+++++.
T Consensus 242 d~vi~~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 242 DAVIDLNN---------------------------SEKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp EEEEESCC---------------------------CHHHHTTGGGGEEEEEEEEECC
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEC
Confidence 99988522 1345778889999999998854
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.021 Score=49.21 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=62.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE-----cchhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN-----TDIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~-----~d~~~~~~~~~~ 113 (256)
+++.+||=+|+|. |..++.+++.+ ++ +|+++|.+++.++.+++ .|.+ .++. .++.+.......
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTA-----GASRIIGIDIDSKKYETAKK----FGVN-EFVNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHH-----TCSCEEEECSCTTHHHHHHT----TTCC-EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHH----cCCc-EEEccccCchhHHHHHHHhcC
Confidence 5788999998853 55555555543 34 79999999988887653 3433 2221 223333333334
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.+.|++| |+++++.
T Consensus 262 gg~D~vid~~g---------------------------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 262 GGVDYSFECIG---------------------------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SCBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC---------------------------CHHHHHHHHHHhhccCCEEEEEc
Confidence 58999987421 135678888899997 9998854
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.039 Score=47.31 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=59.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++.. |+.+...... ...
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~v~~~~~g~g 257 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKA-----TGAEVIVTSSSREKLDRAFA----LGAD-HGINRLEEDWVERVYALTGDRG 257 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEecCchhHHHHHH----cCCC-EEEcCCcccHHHHHHHHhCCCC
Confidence 5789999999653 4444444443 35699999999988887754 3443 23322 2222222222 237
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. ...+..+.+.|+++|+++++.
T Consensus 258 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 258 ADHILEIAG----------------------------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEEEEETT----------------------------SSCHHHHHHHEEEEEEEEEEC
T ss_pred ceEEEECCC----------------------------hHHHHHHHHHhhcCCEEEEEe
Confidence 999987421 012566778999999999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.02 Score=49.24 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+||-+|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++..+-.+..... ...+|+|
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~-~~g~Dvv 261 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHA-----MGAHVVAFTTSEAKREAAKA----LGAD-EVVNSRNADEMAAH-LKSFDFI 261 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEETTCHHHHHTT-TTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCc-EEeccccHHHHHHh-hcCCCEE
Confidence 5789999999863 4555555544 25689999999988887764 3433 23222111111111 2579999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-.- ...+..+.+.|+++|+++.+.
T Consensus 262 id~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 262 LNTVAA---------------------------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EECCSS---------------------------CCCHHHHHTTEEEEEEEEECC
T ss_pred EECCCC---------------------------HHHHHHHHHHhccCCEEEEec
Confidence 874210 112566778999999988754
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.43 Score=45.16 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=35.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~ 90 (256)
++..+|+|+.||.|.++.-+.+......... .+.++|+++.+++.-+.|.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3457899999999998877766532111111 5789999999998877764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.044 Score=47.15 Aligned_cols=96 Identities=21% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE-----cchhhchhhhcC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN-----TDIASGLEKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~-----~d~~~~~~~~~~ 113 (256)
+++.+||-+|+|. |..++.+++. -++ +|+++|.+++..+.+++ .|.+ .++. .++.+.......
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~~Vi~~~~~~~~~~~a~~----lGa~-~vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKI-----AGASRIIAIDINGEKFPKAKA----LGAT-DCLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHHHH----hCCc-EEEccccccchHHHHHHHHhC
Confidence 5789999999752 4454444444 245 79999999988887754 3433 2221 122222222223
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
+.+|+|+-.-. ....+..+.++|+++ |+++++.
T Consensus 264 ~g~Dvvid~~G---------------------------~~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 264 GGVDYSLDCAG---------------------------TAQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SCBSEEEESSC---------------------------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCccEEEECCC---------------------------CHHHHHHHHHHhhcCCCEEEEEC
Confidence 47999987421 135577888899999 9998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.03 Score=48.04 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcCCCcc
Q 025180 42 HPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlG-cG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~fD 117 (256)
++.+||=.| +| .|..++.+++.+ .+++|+++|.+++..+.+++ .|.+ .++. .++.+.......+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~----~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR----TDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH----CCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHhcCCCce
Confidence 678899887 43 466766666652 35699999999988887754 3433 2221 1222222222235799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+-+-. -...+..+.++|+++|+++++
T Consensus 242 vvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTH---------------------------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSC---------------------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCC---------------------------chhhHHHHHHHhcCCCEEEEE
Confidence 9987421 245678888999999999985
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.018 Score=48.87 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=59.4
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025180 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++.+||-.|+| .|..++.+++.. +++|+++|.+++..+.+++ .+.+ .++. .|+.+...... ..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----lga~-~~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL-----NFRLIAVTRNNKHTEELLR----LGAA-YVIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----CCCc-EEEeCCcccHHHHHHHHhCCC
Confidence 578999999987 455655555542 5699999999988887765 2433 2222 22222222222 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ... .....+.|+++|+++++.
T Consensus 213 g~Dvvid~~g---------------------------~~~-~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 213 GADAAIDSIG---------------------------GPD-GNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp CEEEEEESSC---------------------------HHH-HHHHHHTEEEEEEEEECC
T ss_pred CCcEEEECCC---------------------------Chh-HHHHHHHhcCCCEEEEEe
Confidence 7999987521 112 233347899999999864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.027 Score=47.76 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=59.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++. .|.. .++. .++.+.......+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~-----~G~~V~~~~~~~~~~~~~~~~---~g~~-~~~d~~~~~~~~~~~~~~~~~ 224 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKM-----MGCYVVGSAGSKEKVDLLKTK---FGFD-DAFNYKEESDLTAALKRCFPN 224 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHT---SCCS-EEEETTSCSCSHHHHHHHCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHH---cCCc-eEEecCCHHHHHHHHHHHhCC
Confidence 57899999997 345554444443 256999999999887776532 2332 2221 1222222222235
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 225 ~~d~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 225 GIDIYFENVG----------------------------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CEEEEEESSC----------------------------HHHHHHHHTTEEEEEEEEECC
T ss_pred CCcEEEECCC----------------------------HHHHHHHHHHHhcCCEEEEEc
Confidence 6999988521 135778888999999998753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.052 Score=46.15 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcCCCcc
Q 025180 42 HPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlG-cG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~fD 117 (256)
++.+||=.| +| .|..++.+++. .+++|++++.+++..+.+++ .|.+ .++. .++.+.........+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKA-----YGLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhCCCCcc
Confidence 688999884 33 34454444443 35699999999998888775 2433 2221 1222222233335799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.+-. -...+..+.++|+++|+++.+
T Consensus 220 vv~d~~g---------------------------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 220 YVFCTFN---------------------------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEESSC---------------------------HHHHHHHHHHHEEEEEEEEES
T ss_pred EEEECCC---------------------------chHHHHHHHHHhccCCEEEEE
Confidence 9987421 245678888899999999764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.019 Score=48.91 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=59.6
Q ss_pred cCCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+++.+||-.|+|. |..++.+++. .+++|+++|.+++..+.+++ .|.+ .++ .+... ....+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~v~-~~~~~-----~~~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVA-----MGAEVSVFARNEHKKQDALS----MGVK-HFY-TDPKQ-----CKEELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHH-----TTCEEEEECSSSTTHHHHHH----TTCS-EEE-SSGGG-----CCSCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-----CCCeEEEEeCCHHHHHHHHh----cCCC-eec-CCHHH-----HhcCCCE
Confidence 36889999998753 5555555544 25699999999988887754 4443 333 33211 1237999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+-.-. + ...+..+.+.|+++|+++++.
T Consensus 238 vid~~g--------------------~-------~~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIP--------------------T-------HYDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCC--------------------S-------CCCHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------------------c-------HHHHHHHHHHHhcCCEEEEEC
Confidence 987422 0 123667778999999999864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.041 Score=47.13 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++.+||-.| .|.|..++.+++. .+++|++++.+++..+.+++ .|.+ .++. .++.+.........
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~~~~~~~~g 231 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKK-----AKCHVIGTCSSDEKSAFLKS----LGCD-RPINYKTEPVGTVLKQEYPEG 231 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHHHH----cCCc-EEEecCChhHHHHHHHhcCCC
Confidence 5789999998 3456666666554 25689999999988877764 3433 2222 12222222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 232 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 232 VDVVYESVG----------------------------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEEEEECSC----------------------------THHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCC----------------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 999987521 134677788999999998854
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0042 Score=65.91 Aligned_cols=108 Identities=26% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC--CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP--GVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~--~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+..+|||+|.|+|..+..+...+.. .+ ...++-+|+++...+.+++++....+ ..-..|..+. ..+...+||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~-~~~~~~~yt~td~s~~~~~~a~~~f~~~di--~~~~~d~~~~-~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNT-QPVMDLDYTATDRNPQALEAAQAKLEQLHV--TQGQWDPANP-APGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTT-SSSCEEEEEEECSSSSSTTTTTTTHHHHTE--EEECCCSSCC-CC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcc-cCcccceEEEecCChHHHHHHHHHhhhccc--cccccccccc-ccCCCCceeE
Confidence 35679999999999876655555532 12 24688899998888777777653211 1111122111 0112357999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
||+.-..+... .....+.++.++|||||++++..
T Consensus 1315 via~~vl~~t~---------------------~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCALATLG---------------------DPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC-----------------------------------------CCEEEEEE
T ss_pred EEEcccccccc---------------------cHHHHHHHHHHhcCCCcEEEEEe
Confidence 99854332211 14567889999999999998865
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.05 Score=47.19 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=62.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---c-hhhchhhhcC-
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---D-IASGLEKRLA- 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d-~~~~~~~~~~- 113 (256)
+++.+||-.|+|. |..++.+++.+ ++ .|+++|.+++.++.+++ .|.+ ++.. + +.+.......
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~-----Ga~~Vi~~~~~~~~~~~a~~----lGa~--~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLL-----GAAVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-----CCCeEEEEcCCHHHHHHHHH----cCCc--EEccCCcchHHHHHHHHhCC
Confidence 5789999999754 56666666552 44 79999999998888764 3442 2221 1 2222222212
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+|+|+-.-.-.......... +... ....+..+.++|+++|+++++.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~------~~~~------~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGA------KHEA------PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGG------GSBC------TTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCCcccccccccc------cccc------hHHHHHHHHHHHhcCCEEEEec
Confidence 3699998743210000000000 0000 1235777888999999998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.037 Score=47.04 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~f 116 (256)
++.+||-+|+| .++..+.+.+.. .++ +|+++|.+++..+.+++ .+.+ .++. .++.+...... ...+
T Consensus 167 ~g~~VlV~GaG--~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAG--PLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKK----VGAD-YVINPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCS--HHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH----HTCS-EEECTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCC--HHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCC-EEECCCCcCHHHHHHHHcCCCCC
Confidence 78899999984 444434443332 245 89999999988887764 2332 2222 12222222221 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ....+..+.+.|+++|+++.+.
T Consensus 238 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 238 DVFLEFSG---------------------------APKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 99987532 1345777888999999998854
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.071 Score=46.16 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=46.1
Q ss_pred CccccCCchHHHHHHH----HHhhcccccCCCCEEEEecccccHHHHHHHHHhccc---CCCceEEEEeCCHHHHHHHHH
Q 025180 16 EVYEPCDDSFALVDAL----LADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE---VPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l----~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~---~~~~~v~giD~~~~~i~~a~~ 88 (256)
+++++-..+.++.+.+ .+.+.......+-.|+|+|.|+|.+...+...+... +...+++.||+|+...+.-++
T Consensus 50 DF~Tapeis~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~ 129 (387)
T 1zkd_A 50 DFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT 129 (387)
T ss_dssp -CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred CeeCCCchHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHH
Confidence 4444422244554444 443322222334689999999999987777665421 124589999999988775555
Q ss_pred HH
Q 025180 89 TL 90 (256)
Q Consensus 89 ~~ 90 (256)
.+
T Consensus 130 ~L 131 (387)
T 1zkd_A 130 LL 131 (387)
T ss_dssp HS
T ss_pred Hh
Confidence 44
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.63 Score=46.54 Aligned_cols=157 Identities=12% Similarity=0.036 Sum_probs=86.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------------ 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------------ 109 (256)
...+++|+.||.|.+.+.+.+. +-.-.+.++|+++.+++.-+.|.. ...++.+|+.+...
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A----G~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~gdi~~~~~ 921 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA----GISETLWAIEMWDPAAQAFRLNNP----GTTVFTEDCNVLLKLVMAGEVTNSLG 921 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT----TSEEEEEEECCSHHHHHHHHHHCT----TSEEECSCHHHHHHHHTTTCSBCSSC
T ss_pred CCceEEecccCccHHHHHHHHC----CCCceEEEEECCHHHHHHHHHhCC----CCcEeeccHHHHhHhhhccchhhhhh
Confidence 4578999999999988776554 111158899999999988777642 22566666654321
Q ss_pred -hh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHH
Q 025180 110 -KR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQ 181 (256)
Q Consensus 110 -~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~ 181 (256)
.. ..+.+|+|+..||--..+......... .. +.. ...+..+++ +.+.++|.-+++=..++.. ....
T Consensus 922 ~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~---~~-d~R-~~L~~~~lr-iv~~~rPk~fv~ENV~glls~~~g~~~~~ 995 (1330)
T 3av4_A 922 QRLPQKGDVEMLCGGPPCQGFSGMNRFNSRT---YS-KFK-NSLVVSFLS-YCDYYRPRFFLLENVRNFVSYRRSMVLKL 995 (1330)
T ss_dssp CBCCCTTTCSEEEECCCCTTTCSSSCCCHHH---HH-HHH-HSHHHHHHH-HHHHHCCSEEEEEEEGGGGTTTTTHHHHH
T ss_pred hhccccCccceEEecCCCccccccccccccc---cc-chh-hHHHHHHHH-HHHHhcCcEEEEeccHHHhccCccHHHHH
Confidence 01 124689999999987766432110000 00 000 001223333 3345788633332222211 1245
Q ss_pred HHHHHHHcCCcEEEEEe------cCCCCccEEEEEEE
Q 025180 182 ICLQMMEKGYAARIVVQ------RSTEEENLHIIKFW 212 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~------~~~~~~~~~l~~~~ 212 (256)
+...|.+.||.+..... ..+...+++++-.+
T Consensus 996 il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 1032 (1330)
T 3av4_A 996 TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAA 1032 (1330)
T ss_dssp HHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEEC
T ss_pred HHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEec
Confidence 67777888987654321 12445666666554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.035 Score=47.94 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc------chhhchhhhc
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINT------DIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~------d~~~~~~~~~ 112 (256)
+++.+||-.|+| .|..++.+++. -+ ++|+++|.+++..+.+++ .|.+ .++.. |+.+......
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARS-----LGAENVIVIAGSPNRLKLAEE----IGAD-LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH-----TTBSEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----cCCceEEEEcCCHHHHHHHHH----cCCc-EEEeccccCcchHHHHHHHHh
Confidence 578999999954 24444444443 24 489999999988887763 3443 33322 2222222222
Q ss_pred C-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 A-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. ..+|+|+-+-.. ...+..+.++|+++|+++++.
T Consensus 264 ~g~g~Dvvid~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 264 HGRGADFILEATGD---------------------------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp TTSCEEEEEECSSC---------------------------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCcEEEECCCC---------------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 2 369999874220 134677788999999998854
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.14 Score=43.38 Aligned_cols=99 Identities=18% Similarity=0.096 Sum_probs=61.4
Q ss_pred cCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025180 40 EHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~-~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
.+++.+||=+|+|.+. ..+.+++. ..+++|+++|.+++..+.+++ .+.+. +....|..+...... ...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~----~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g 232 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKN----VFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLG 232 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH----TSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHH----hCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCC
Confidence 3678999999987643 33333333 346799999999988776654 34332 222334433333322 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|.++.+.. -...+..+.+.|+++|+++++.
T Consensus 233 ~d~~~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 233 VQSAIVCAV---------------------------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEEECCS---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ceEEEEecc---------------------------CcchhheeheeecCCceEEEEe
Confidence 777776422 2456778888999999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.028 Score=47.77 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcC-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~-~~ 115 (256)
+++.+||=.|+ |.|..++.+++. .+++|++++.+++..+.+++ .+.+ .++. .++.+....... ..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~v~~~~~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKG-----MGAKVIAVVNRTAATEFVKS----VGAD-IVLPLEEGWAKAVREATGGAG 227 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEESSTTHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCc-EEecCchhHHHHHHHHhCCCC
Confidence 57899999987 345565555554 25699999999988877765 2433 2222 233332222222 36
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 228 ~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 228 VDMVVDPIG----------------------------GPAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEEEESCC------------------------------CHHHHHHTEEEEEEEEEC-
T ss_pred ceEEEECCc----------------------------hhHHHHHHHhhcCCCEEEEEE
Confidence 999987521 123667778999999999854
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.42 Score=40.46 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC----------------------Ccce
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN----------------------VHAD 98 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~----------------------~~~~ 98 (256)
.+...|+.+|||......-+... +++..++-+|. |+.++.-++.+...+ -...
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~----~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 170 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQM----FPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYK 170 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHH----CTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCc----CCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceE
Confidence 35689999999999965444332 46778888887 888877677666541 1227
Q ss_pred EEEcchhhch------hhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 99 LINTDIASGL------EKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 99 ~~~~d~~~~~------~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
++..|+.+.. ... ......++++-......+ .+....+++.+.+.. |+|.+++
T Consensus 171 ~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-------------------~~~~~~ll~~ia~~~-~~~~~v~ 230 (334)
T 1rjd_A 171 LAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-------------------NNESQLLINTIMSKF-SHGLWIS 230 (334)
T ss_dssp EEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-------------------HHHHHHHHHHHHHHC-SSEEEEE
T ss_pred EEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-------------------HHHHHHHHHHHHhhC-CCcEEEE
Confidence 8888887641 111 124466777743322211 123567788887766 7777654
Q ss_pred EE
Q 025180 172 VT 173 (256)
Q Consensus 172 ~~ 173 (256)
..
T Consensus 231 ~e 232 (334)
T 1rjd_A 231 YD 232 (334)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.051 Score=46.34 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=59.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
+++++||-.|. |.|...+.+++. .+++|+++|.+++..+.+++ .+.+ .++. .++.+.........
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARA-----FGAEVYATAGSTGKCEACER----LGAK-RGINYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHSSC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCC-EEEeCCchHHHHHHHHHhCCC
Confidence 57889998853 345555444443 25689999999998887765 2333 2222 12222222222357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 236 ~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILDMIG----------------------------AAYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEEEESCC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred ceEEEECCC----------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 999987522 123566778999999998854
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.064 Score=45.49 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=59.7
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~ 114 (256)
+++.+||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .+.. .++.. ++.+...... ..
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~-----~G~~Vi~~~~~~~~~~~~~~----~ga~-~~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKL-----FGARVIATAGSEDKLRRAKA----LGAD-ETVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTSTTHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHh----cCCC-EEEcCCcccHHHHHHHHhCCC
Confidence 57899999998 456665555554 25699999999998887754 2332 22211 2222222221 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 235 ~~d~vi~~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 235 GADKVVDHTG----------------------------ALYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp CEEEEEESSC----------------------------SSSHHHHHHHEEEEEEEEESS
T ss_pred CceEEEECCC----------------------------HHHHHHHHHhhccCCEEEEEe
Confidence 7999988522 012566677899999998754
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.21 Score=40.29 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=73.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
++++||=.| |+|.++..+++.|.++ .+++|++++.++...+.+.+.+...+....++.+|+.+... ... -
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHh-cCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 457777666 6677888888887651 25689999999887776666666555445788888765421 111 1
Q ss_pred CCccEEEECCCCCCCCCcccc-cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVG-REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+|+||.|--.......... .......+... ..-...+++.+.+.++++|+++++.
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN---FFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhhee---eeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 479999987643322111000 00001001000 0012345666777777788888765
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.16 Score=44.08 Aligned_cols=72 Identities=8% Similarity=0.132 Sum_probs=43.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcC-C
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLA-G 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~-~ 114 (256)
+++.+||=.|+|. |..++.+++. .++ .|+++|.+++..+.+++. |.+ .++. .|+.+....... .
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~-----~Ga~~Vi~~~~~~~~~~~~~~l----Ga~-~vi~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKH-----AGASKVILSEPSEVRRNLAKEL----GAD-HVIDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCHHHHHHHHHH----TCS-EEECTTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEECCCHHHHHHHHHc----CCC-EEEcCCCCCHHHHHHHHhCCC
Confidence 5788999998742 4444444443 245 899999999988887653 432 2222 233333322222 3
Q ss_pred CccEEEEC
Q 025180 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+|+-.
T Consensus 282 g~D~vid~ 289 (404)
T 3ip1_A 282 GAKLFLEA 289 (404)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 69999874
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.1 Score=43.74 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=57.8
Q ss_pred EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025180 45 LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 45 ~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
+||=.|+ |.|..++.+++.+ +++|++++.+++..+.+++ .|.+ .++..+-.+.......+.+|+++-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-----GYQVAAVSGRESTHGYLKS----LGAN-RILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCGGGHHHHHH----HTCS-EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred eEEEECCCcHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHh----cCCC-EEEecCCHHHHHhhcCCCccEEEEC
Confidence 3888886 4566666666652 5689999999988888765 3433 2222111111122223579988763
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-. ...+..+.+.|+++|+++.+.
T Consensus 219 ~g----------------------------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 219 VG----------------------------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp SC----------------------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CC----------------------------cHHHHHHHHHHhcCCEEEEEe
Confidence 11 136788888999999999854
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.087 Score=44.94 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=57.6
Q ss_pred CEEEEecccccHHHHHH-HHHh-cccCCCce-EEEEeCCHH---HHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCC
Q 025180 44 VLCMEVGCGSGYVITSL-ALML-GQEVPGVQ-YIATDINPY---AVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l-~~~l-~~~~~~~~-v~giD~~~~---~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~ 115 (256)
.+||=.|+ |.++..+ .+.+ .. .++. |+++|.+++ ..+.+++ .|.+ .+ ...|+.+ .... .+.
T Consensus 174 ~~VlV~Ga--G~vG~~a~iqla~k~--~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~-~gg 242 (357)
T 2b5w_A 174 SSAFVLGN--GSLGLLTLAMLKVDD--KGYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV-YEQ 242 (357)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHCT--TCCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH-SCC
T ss_pred CEEEEECC--CHHHHHHHHHHHHHH--cCCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh-CCC
Confidence 89999997 4555555 5544 32 3556 999999887 7777653 3432 12 0112223 2232 347
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.-. ....+..+.+.|+++|+++++.
T Consensus 243 ~Dvvid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 243 MDFIYEATG---------------------------FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp EEEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 999987421 1245778888999999998854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.08 Score=45.14 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=57.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|++++.+++..+.+++ .+.. .++.. +..+...... ..
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARA-----YGLKILGTAGTEEGQKIVLQ----NGAH-EVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHH-----CCCEEEEEeCChhHHHHHHH----cCCC-EEEeCCCchHHHHHHHHcCCC
Confidence 57899999997 334444433333 25799999999988776543 3432 22211 2222221111 23
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 239 ~~D~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIEMLA----------------------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CEEEEEESCH----------------------------HHHHHHHHHHEEEEEEEEECC
T ss_pred CcEEEEECCC----------------------------hHHHHHHHHhccCCCEEEEEe
Confidence 6999988521 134667788999999998854
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.054 Score=45.56 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++++||-.|+ |.|...+.+++.. +++|++++.+++..+.+++ .|.+ .++. .++.+...... ..
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL-----GAKLIGTVSSPEKAAHAKA----LGAW-ETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHhCCC
Confidence 57899998883 3455555555542 5689999999998887764 2332 2222 22222222222 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ...+..+.+.|+++|+++++.
T Consensus 209 g~Dvvid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 209 KCPVVYDGVG----------------------------QDTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp CEEEEEESSC----------------------------GGGHHHHHTTEEEEEEEEECC
T ss_pred CceEEEECCC----------------------------hHHHHHHHHHhcCCCEEEEEe
Confidence 6999987521 123667788999999999864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.068 Score=45.10 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++.+||-.|+ |.|...+.+++. .+++|++++.+++..+.+++ .+.+ .++. .++.+...... ..
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKM-----KGAHTIAVASTDEKLKIAKE----YGAE-YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCc-EEEeCCCchHHHHHHHHhCCC
Confidence 57899999984 344454444443 35699999999988887654 3432 2222 22222222221 34
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.+-. ...+..+.++|+++|+++++.
T Consensus 217 g~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVG----------------------------KDTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCG----------------------------GGGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCC----------------------------hHHHHHHHHHhccCCEEEEEc
Confidence 6999987521 133667778999999999854
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.1 Score=44.45 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=58.7
Q ss_pred CCC--CEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCC
Q 025180 41 HHP--VLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~--~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~ 114 (256)
+++ ++||-.|++ |.++..+++.+.. .++ +|+++|.+++..+.+++. .+.. .++. .++.+.......+
T Consensus 157 ~~g~~~~vlI~Gas-ggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~~---~g~~-~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 157 TAGSNKTMVVSGAA-GACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTSE---LGFD-AAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CTTSCCEEEESSTT-BHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT---SCCS-EEEETTTSCHHHHHHHHCTT
T ss_pred CCCCccEEEEECCC-cHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHHH---cCCc-eEEecCchHHHHHHHHhcCC
Confidence 467 899999873 3333334444332 256 899999998877766542 2332 2221 1222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.++|+++|+++++.
T Consensus 230 ~~d~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 230 GVDVYFDNVG----------------------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CEEEEEESCC----------------------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECCC----------------------------HHHHHHHHHHhccCcEEEEEC
Confidence 7999988521 145777888999999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.051 Score=46.44 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh-hchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
+++.+||-+|+|. |..++.+++.+ +++|+++|.+++..+.+++ .|.+ .++..+-. +..... .+.+|+
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-----Ga~Vi~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~~~~~-~~~~D~ 246 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKREDAMK----MGAD-HYIATLEEGDWGEKY-FDTFDL 246 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHH----HTCS-EEEEGGGTSCHHHHS-CSCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCcCchHHHHHh-hcCCCE
Confidence 5789999999842 44544444442 4689999999888887765 3433 23322111 111111 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+..-.... ...+..+.+.|+++|+++.+.
T Consensus 247 vid~~g~~~-------------------------~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 247 IVVCASSLT-------------------------DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEECCSCST-------------------------TCCTTTGGGGEEEEEEEEECC
T ss_pred EEECCCCCc-------------------------HHHHHHHHHHhcCCCEEEEec
Confidence 987532100 012455677899999988743
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.079 Score=44.52 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=57.4
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++++||-.|+ |.|...+.+++. . +++|+++|.+++..+.+++ .+.. .++. .+..+...... ..
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~---~--G~~V~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKA---L--GAKLIGTVGTAQKAQSALK----AGAW-QVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHH----cCCC-EEEECCCccHHHHHHHHhCCC
Confidence 57899999984 344444333333 2 5689999999988877765 2332 2221 12222211111 24
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 209 ~~D~vi~~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 209 KVRVVYDSVG----------------------------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CEEEEEECSC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred CceEEEECCc----------------------------hHHHHHHHHHhcCCCEEEEEe
Confidence 6999988521 123667778999999998854
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.029 Score=47.65 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=58.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++. .++ +|+++|.+++..+.+++. . + .++. .++.+.........+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~-----~Ga~~Vi~~~~~~~~~~~~~~l-a----~-~v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA-----SGAGPILVSDPNPYRLAFARPY-A----D-RLVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH-----TTCCSEEEECSCHHHHGGGTTT-C----S-EEECTTTSCHHHHHHHHHSSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEECCCHHHHHHHHHh-H----H-hccCcCccCHHHHHHHhcCCCC
Confidence 788999999842 4444444443 255 899999999887776542 1 1 2221 122222222113469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ....++.+.+.|+++|+++++.
T Consensus 233 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 233 EVLLEFSG---------------------------NEAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987422 1245777888999999988754
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.28 Score=36.63 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
+.+.+|+..... .-..-|||+|-|+|.-- ..|.+..|+-.|+++|-.-.+-.. .......++.+|+
T Consensus 27 R~~L~~a~~~v~----~~~GpVlElGLGNGRTy----dHLRe~~P~R~I~vfDR~~~~hp~------~~P~~e~~ilGdi 92 (174)
T 3iht_A 27 RACLEHAIAQTA----GLSGPVYELGLGNGRTY----HHLRQHVQGREIYVFERAVASHPD------STPPEAQLILGDI 92 (174)
T ss_dssp HHHHHHHHHHTT----TCCSCEEEECCTTCHHH----HHHHHHCCSSCEEEEESSCCCCGG------GCCCGGGEEESCH
T ss_pred HHHHHHHHHHhc----CCCCceEEecCCCChhH----HHHHHhCCCCcEEEEEeeeccCCC------CCCchHheecccH
Confidence 445566666654 35678999999999953 344444888899999953221110 1112238999999
Q ss_pred hhchhh---hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 105 ASGLEK---RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 105 ~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.++. ++..+.-++-++.-... ++. .......+-.-+..+|.|||+++-
T Consensus 93 ~~tL~~~~~r~g~~a~LaHaD~G~g~--------~~~---------d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 93 RETLPATLERFGATASLVHADLGGHN--------REK---------NDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp HHHHHHHHHHHCSCEEEEEECCCCSC--------HHH---------HHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeecCCCC--------cch---------hHHHHHhhhHHHHHHhcCCcEEEe
Confidence 988764 23444444444322111 000 011223334456789999999886
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.97 E-value=1.1 Score=36.49 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=56.1
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCc
Q 025180 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~ 96 (256)
+.|+..++..-+...+.+-. ...+++||=.|++ |.++.++++.+.++ +++|+.++. +++..+...+.+...+..
T Consensus 6 ~~~~~~~~~~~n~~~~~mm~--~~~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T 4da9_A 6 HHSSGVDLGTENLYFQSMMT--QKARPVAIVTGGR-RGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGAR 80 (280)
T ss_dssp -----------------CCS--CCCCCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCCHHHHHHHHHHHHHTTCC
T ss_pred cCcccccccccchhhhhhhh--ccCCCEEEEecCC-CHHHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHHHhcCCc
Confidence 33444344444444333311 2356778877765 45677777777654 678999995 777777666666665655
Q ss_pred ceEEEcchhhchh--hhc------CCCccEEEECCCC
Q 025180 97 ADLINTDIASGLE--KRL------AGLVDVMVVNPPY 125 (256)
Q Consensus 97 ~~~~~~d~~~~~~--~~~------~~~fD~Ii~npP~ 125 (256)
..++..|+.+... ... -+++|++|.|--.
T Consensus 81 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 81 VIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp EEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6788888876531 111 1479999998654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.73 Score=33.17 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=49.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
.++|+=+|+ |.++..+++.|.+. +..|+++|.+++.++.+++. + ..++.+|..+.. ....-..+|+|+
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~----~--~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE----G--FDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT----T--CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----C--CcEEECCCCCHHHHHhCCcccCCEEE
Confidence 457888887 55788888887654 56899999999887766542 2 367778876542 121235789998
Q ss_pred ECCC
Q 025180 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
...|
T Consensus 76 ~~~~ 79 (141)
T 3llv_A 76 ITGS 79 (141)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.16 Score=43.27 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=56.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~f 116 (256)
+++++||-.|++ |.++..+++.+.. .+++|+++|.+++..+.+++ .+.+ .++.. +..+...... ...+
T Consensus 161 ~~g~~vlV~Ga~-ggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 161 QAGDYVLIHAGL-SGVGTAAIQLTRM--AGAIPLVTAGSQKKLQMAEK----LGAA-AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CTTCEEEESSTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCc-cHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cCCc-EEEecCChHHHHHHHHHhcCCCc
Confidence 578999998842 2233333443332 25699999999988887743 2332 12211 2222222211 2469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ...+..+.+.|+++|+++++.
T Consensus 233 d~vi~~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 233 NLILDCIG----------------------------GSYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp EEEEESSC----------------------------GGGHHHHHHHEEEEEEEEECC
T ss_pred eEEEECCC----------------------------chHHHHHHHhccCCCEEEEEe
Confidence 99987522 013566678899999998854
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.15 Score=42.92 Aligned_cols=95 Identities=22% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhh-cCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~-~~~ 114 (256)
+++++||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .+.. .++.. +..+..... ...
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~-----~G~~Vi~~~~~~~~~~~~~~----~g~~-~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARH-----LGATVIGTVSTEEKAETARK----LGCH-HTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCS-EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----cCCC-EEEECCCHHHHHHHHHHhCCC
Confidence 57899999985 455555444443 25699999999988877754 2332 22211 222222111 124
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++.+-. + ..++.+.+.|+++|+++++.
T Consensus 214 ~~d~vi~~~g--------------------~--------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 214 GVDVVYDSIG--------------------K--------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CEEEEEECSC--------------------T--------TTHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEECCc--------------------H--------HHHHHHHHhhccCCEEEEEe
Confidence 6999987522 0 23667778999999998754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.88 Score=37.01 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=73.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++. .++.++++.+.++ +++|+.+|.+ ...++.+...+...+....++..|+.+...
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 567888888664 5577777777654 6789999987 666666666666555555788888765421
Q ss_pred --hhc------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 110 --KRL------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... -+++|++|.|--+..... +.........+... ..-...+++.+...++.+|+++.+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGA-HLPVQAFADAFDVD---FVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCT-TCCTHHHHHHHHHH---THHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccC-cCCHHHHHHHhhhh---hhhhHHHHHHHHHHhhcCcEEEEec
Confidence 111 147999999875543221 10000001111000 0012344566777788889888754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.57 E-value=0.18 Score=41.81 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch-hhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI-ASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~fD 117 (256)
+++.+||-.|+ |.|...+.+++. .+++|+++|.+++..+.+++ .|.+ .++..+- .+..... ..+|
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~-----~Ga~Vi~~~~~~~~~~~~~~----~ga~-~~~~~~~~~~~~~~~--~~~d 191 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARA-----MGLRVLAAASRPEKLALPLA----LGAE-EAATYAEVPERAKAW--GGLD 191 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSGGGSHHHHH----TTCS-EEEEGGGHHHHHHHT--TSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHh----cCCC-EEEECCcchhHHHHh--cCce
Confidence 57899999997 345555555554 25699999999888777653 3433 2222111 1111111 5799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+. -.- ..+..+.+.|+++|+++.+.
T Consensus 192 ~vid-~g~----------------------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 192 LVLE-VRG----------------------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEE-CSC----------------------------TTHHHHHTTEEEEEEEEEC-
T ss_pred EEEE-CCH----------------------------HHHHHHHHhhccCCEEEEEe
Confidence 9876 321 12567778999999988754
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.27 Score=42.06 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
.++.+||=.|++ .|..++.+++.. +++|+++. +++..+.+++ .|.+ .++. .|+.+.......+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-----Ga~Vi~~~-~~~~~~~~~~----lGa~-~vi~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-----GYIPIATC-SPHNFDLAKS----RGAE-EVFDYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEEE-CGGGHHHHHH----TTCS-EEEETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEe-CHHHHHHHHH----cCCc-EEEECCCchHHHHHHHHccCC
Confidence 578899999883 677776666652 56888885 7776666543 4543 2332 23333333333456
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 173 (256)
+|+++-.-. -...+..+.+.| +++|+++.+.
T Consensus 232 ~d~v~d~~g---------------------------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 232 LRYALDCIT---------------------------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCEEEESSC---------------------------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred ccEEEECCC---------------------------chHHHHHHHHHhhcCCCEEEEEe
Confidence 999987421 134567777788 6999998743
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.37 Score=40.58 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=59.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~ 115 (256)
.++.+||=.|+|. |.+++.+++.+ ....++++|.+++..+.+++ .|.+. ++. .|..+...... ...
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~----G~~~vi~~~~~~~k~~~a~~----lGa~~-~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVAL----GAKSVTAIDISSEKLALAKS----FGAMQ-TFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESCHHHHHHHHH----TTCSE-EEETTTSCHHHHHHHHGGGCS
T ss_pred CCCCEEEEECCCCcchHHHHHHHHc----CCcEEEEEechHHHHHHHHH----cCCeE-EEeCCCCCHHHHHHhhcccCC
Confidence 5789999998864 34444444442 22367899999998887765 34432 222 22222221111 245
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+..-. ....++.+.++|+++|+++++..
T Consensus 230 ~d~v~d~~G---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 230 NQLILETAG---------------------------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp SEEEEECSC---------------------------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred ccccccccc---------------------------ccchhhhhhheecCCeEEEEEec
Confidence 788876311 24567888889999999998543
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.78 Score=37.23 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++ |.++.++++.|.++ +++|+.+|.+ ++.++...+.+...+....++..|+.+...
T Consensus 12 ~gk~vlVTGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGAA-RGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 56788888854 55677778877654 6789999987 666666666666556556788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025180 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|--..
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 111 15799999987544
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.63 Score=37.49 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=72.3
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh--hhc-----
Q 025180 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|++.+ .++.++++.+.++ +++|+.++.++...+.+.+.....+- ...++..|+.+... ...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 5678888887632 3566677777654 67899999887666666555554443 34788888765431 111
Q ss_pred -CCCccEEEECCCCCCCC----C-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 -AGLVDVMVVNPPYVPTP----E-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+.+|+++.|.-+.... . .+.........+.. ...-...+++.+...++++|+++++..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~---n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNI---SSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHH---HTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHH---hHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 14789999987654311 0 00000000000000 000122356677778888999888663
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.12 Score=44.17 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=57.4
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDV 118 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~ 118 (256)
+++||-.|+ |.++..+++.+... +++|+++|.++ +..+.+++ .+.+ .+ .. ++.+.... ....+|+
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v-~~~~~~~~~~~-~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YY-NSSNGYDKLKD-SVGKFDV 249 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EE-ECTTCSHHHHH-HHCCEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-ee-chHHHHHHHHH-hCCCCCE
Confidence 899999997 55555555544332 46999999987 76666654 2332 12 11 11111111 1257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 174 (256)
|+.+-.- ...+ +.+.+.|+++|+++++..
T Consensus 250 vid~~g~---------------------------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 250 IIDATGA---------------------------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEECCCC---------------------------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred EEECCCC---------------------------hHHHHHHHHHHHhcCCEEEEEec
Confidence 9885321 1235 778889999999988543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.12 Score=43.40 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCCC-EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-ch-hhchhhhcCCC
Q 025180 41 HHPV-LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DI-ASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~-~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~ 115 (256)
+++. +||-.|+ |.|..++.+++. .+++|++++.+++..+.+++ .|.+. ++.. +. .+.........
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~-----~Ga~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAK-----RGYTVEASTGKAAEHDYLRV----LGAKE-VLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHH-----TTCCEEEEESCTTCHHHHHH----TTCSE-EEECC---------CCSCC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHHH----cCCcE-EEecCCcHHHHHHHhcCCc
Confidence 3454 7999987 455665555554 24689999999887777654 34332 2211 11 11111112346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. + ..+..+.+.|+++|+++++.
T Consensus 217 ~d~vid~~g--------------------~--------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 217 WAAAVDPVG--------------------G--------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEEECST--------------------T--------TTHHHHHHTEEEEEEEEECS
T ss_pred ccEEEECCc--------------------H--------HHHHHHHHhhccCCEEEEEe
Confidence 999987421 0 12566778999999998753
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.96 Score=36.35 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=72.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.++++||=.|++ +|.++.++++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... ..
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc--CCCEEEEecchhhHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999874 467788888887754 5789999988655555554444433 24777888765421 11
Q ss_pred cCCCccEEEECCCCCCCC----C-cc-cccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTP----E-DE-VGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~----~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+++|++|.|.-+.... . .+ .........+...-. -...+.+.+...++++|+++++.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~---~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAY---SFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTT---HHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHH---HHHHHHHHHHHHhccCceEEEEe
Confidence 125799999987543321 0 00 000000000000000 12344566777788888888765
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.81 Score=36.77 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++. .++.++++.+.++ +++|+.+|.+++..+...+.+...+....++..|+.+... ... -
T Consensus 11 ~~k~vlVTGas~-gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAA-GIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSS-HHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567888777654 5566777776654 5789999999988887777776666556778888765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 88 g~id~lv~nAg~~ 100 (256)
T 3gaf_A 88 GKITVLVNNAGGG 100 (256)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999986543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=2.2 Score=35.60 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCC--c--ceEEEcchhhchhh-hc---
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNV--H--ADLINTDIASGLEK-RL--- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~--~--~~~~~~d~~~~~~~-~~--- 112 (256)
....|+++|||-=.- +..+. .+ +..++=+| .|..++..++.+...+. . ..++..|+.+.... ..
T Consensus 102 g~~QvV~LGaGlDTr----a~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g 174 (310)
T 2uyo_A 102 GIRQFVILASGLDSR----AYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAG 174 (310)
T ss_dssp TCCEEEEETCTTCCH----HHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTT
T ss_pred CCCeEEEeCCCCCch----hhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhcc
Confidence 346899999998884 45544 23 47899999 69999988888876542 1 27788888762211 11
Q ss_pred --CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 113 --AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 113 --~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....=++++.......+. +....+++.+...+.||+.+++.....
T Consensus 175 ~d~~~Pt~~i~Egvl~Yl~~-------------------~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 175 FDPSARTAWLAEGLLMYLPA-------------------TAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp CCTTSCEEEEECSCGGGSCH-------------------HHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCCCCCEEEEEechHhhCCH-------------------HHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 122334444332221111 225788999988889999999865433
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=1 Score=35.81 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=55.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+....++.+|+.+... ... .
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467787777 5677788888887754 5789999999887766666655544445677888765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.|--..
T Consensus 87 ~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 87 GKVDILVNNAGGG 99 (255)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999876543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=1.1 Score=36.91 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=71.2
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025180 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|.++| .++.++++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... .. .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG-AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHHHHh
Confidence 5788898887654 4666677777654 5789999998766555555444433 34677788765421 11 1
Q ss_pred CCCccEEEECCCCCCC----CC-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 AGLVDVMVVNPPYVPT----PE-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|--+... .. .+.........+... ..-...+.+.+.+.++.+|+++.+..
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLIS---VYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCEEEEEee
Confidence 2579999998654321 00 010000000000000 00122345666677778899888663
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.74 Score=37.13 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--h------
Q 025180 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--K------ 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~------ 110 (256)
-+++++|=-|++++ .++.++++.+.++ +++|+.+|.+++..+.+.+.+...+ ....++..|+.+... .
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36888998887543 4666777777654 6799999999888887777766544 344777888765421 0
Q ss_pred hcCCCccEEEECCCCC
Q 025180 111 RLAGLVDVMVVNPPYV 126 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~ 126 (256)
..-+++|+++.|-.+.
T Consensus 82 ~~~G~iD~lvnnAg~~ 97 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFA 97 (256)
T ss_dssp HHHCCCSEEEECCCCC
T ss_pred HHhCCCCEEEeccccc
Confidence 0126899999986543
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.22 Score=40.98 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCc-EEEEEec--CCCCccEEEEEEEecC
Q 025180 155 ILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYA-ARIVVQR--STEEENLHIIKFWRDF 215 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~--~~~~~~~~l~~~~~~~ 215 (256)
+++.+.++|+|||.+++...... ..+.+...+.+. |. ...+.+. ....|.+++....++.
T Consensus 236 al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~-F~~Vr~vKP~ASR~StEvf~La~gf~g~ 300 (320)
T 2hwk_A 236 LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQ-FKFSRVCKPKSSLEETEVLFVFIGYDRK 300 (320)
T ss_dssp THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-EEEEEEECCTTCCSTTCEEEEEEEECCC
T ss_pred HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHh-cceeeeeCCCCccccceEEEEEEeecCC
Confidence 67778899999999999776555 455666666654 44 4444442 2345666666666553
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.66 E-value=1.1 Score=37.09 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++..++.+.+.+...+....++..|+.+... ... -
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 56788888876 45677777777654 5789999999998888777777666666788888766421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 107 g~id~lvnnAg~~ 119 (301)
T 3tjr_A 107 GGVDVVFSNAGIV 119 (301)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4799999987554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.66 E-value=1.1 Score=35.96 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.+++.++...+.+ +....++..|+.+... .. .-
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888865 55677778877654 679999999988776655543 3234777888765421 00 11
Q ss_pred CCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++|+++.|--......... ...+....+... ..-.-.+.+.+...++++|+++.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N---~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVN---TKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 57999999865443221110 000001001000 0012234566777788889888765
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.21 Score=41.63 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=56.2
Q ss_pred cCCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 40 EHHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+++.+||=.|+| .|..++.+++.+ +++|++++ +++..+.+++ .|.+ .++. | .+ .. ...+|+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~Vi~~~-~~~~~~~~~~----lGa~-~v~~-d-~~---~v-~~g~Dv 202 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNA-----GYVVDLVS-ASLSQALAAK----RGVR-HLYR-E-PS---QV-TQKYFA 202 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEC-SSCCHHHHHH----HTEE-EEES-S-GG---GC-CSCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEE-ChhhHHHHHH----cCCC-EEEc-C-HH---Hh-CCCccE
Confidence 3588999999994 355555555543 56999999 8888887765 3432 3332 4 22 11 467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+-.-. ...+..+.++|+++|+++.+.
T Consensus 203 v~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 203 IFDAVN----------------------------SQNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EECC-----------------------------------TTGGGEEEEEEEEEEC
T ss_pred EEECCC----------------------------chhHHHHHHHhcCCCEEEEEe
Confidence 976311 112356778999999999863
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.34 E-value=1.8 Score=32.59 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhh-cCCCccEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKR-LAGLVDVM 119 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~-~~~~fD~I 119 (256)
+.+|+=+|+ |.++..+++.|.+.. +..|+++|.+++.++.+++ .+ ..++.+|..+. +... .-..+|+|
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~----~g--~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARY-GKISLGIEIREEAAQQHRS----EG--RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHH----TT--CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHH----CC--CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 567887765 677777777775430 4589999999988776543 23 25666776442 1121 12468999
Q ss_pred EECCC
Q 025180 120 VVNPP 124 (256)
Q Consensus 120 i~npP 124 (256)
+...|
T Consensus 110 i~~~~ 114 (183)
T 3c85_A 110 LLAMP 114 (183)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 98533
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=92.32 E-value=1.4 Score=35.93 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++-+++.++...+.+...+. ...++.+|+.+... ...
T Consensus 27 ~~k~vlITGa-sggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 27 QGKKVIVTGA-SKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678887775 466777788877654 57899999998887766665554443 34777888765321 111
Q ss_pred CCCccEEEEC
Q 025180 113 AGLVDVMVVN 122 (256)
Q Consensus 113 ~~~fD~Ii~n 122 (256)
-+.+|++|.|
T Consensus 104 ~g~iD~li~n 113 (286)
T 1xu9_A 104 MGGLDMLILN 113 (286)
T ss_dssp HTSCSEEEEC
T ss_pred cCCCCEEEEC
Confidence 1479999987
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.18 Score=42.40 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCC-EEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-h-hhchhhhcCCC
Q 025180 41 HHPV-LCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-I-ASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~-~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-~-~~~~~~~~~~~ 115 (256)
+++. +||=.|+ |.|..++.+++.. +++|++++.+++..+.+++ .|.+ .++..+ . .+.........
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQ----LGAS-EVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHH----HTCS-EEEEHHHHCSSCCCSSCCCC
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCchHHHHHHhhcCC
Confidence 3454 7999987 4555555555542 4689999998877777654 3433 222211 1 11111112346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. ...+..+.+.|+++|+++++.
T Consensus 218 ~d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 218 WQGAVDPVG----------------------------GKQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEEESCC----------------------------THHHHHHHTTEEEEEEEEECC
T ss_pred ccEEEECCc----------------------------HHHHHHHHHhhcCCCEEEEEe
Confidence 999987421 124677788999999998754
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.94 Score=39.86 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-----------
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DI----------- 104 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~----------- 104 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++ .|.+ .++.. |.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~-----~Ga~vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALA-----GGANPICVVSSPQKAEICRA----MGAE-AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----HTCC-EEEETTTTTCCSEEETTEECH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCeEEEEECCHHHHHHHHh----hCCc-EEEecCcCcccccccccccch
Confidence 57899999987 345565555554 35789999999988887754 3432 12211 11
Q ss_pred ------hhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 105 ------ASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ------~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+...... ...+|+|+-+.. ...+..+.++|+++|+++++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG----------------------------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC----------------------------HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC----------------------------chhHHHHHHHhhCCcEEEEEe
Confidence 01111211 247999987421 145777788999999998753
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.19 Score=44.13 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=49.2
Q ss_pred CccccCCc-hHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHH
Q 025180 16 EVYEPCDD-SFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~-~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+.|.-.++ +.++.+.+..++..+- ......|+|+|.|+|.+...+...+.+..+ ..+++.||+|+...+.-++++..
T Consensus 109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 34444444 5555554443332211 112579999999999988877776654221 23799999999988877777654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.09 E-value=1.2 Score=35.73 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcC-----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLA----- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~----- 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++- ++...+...+.+...+....++.+|+.+... ...+
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678887774 577788888887754 568999998 7777666655555545445778888765421 1111
Q ss_pred -CCccEEEECCCCC
Q 025180 114 -GLVDVMVVNPPYV 126 (256)
Q Consensus 114 -~~fD~Ii~npP~~ 126 (256)
+.+|++|.|....
T Consensus 97 ~~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 97 FGGLDFVMSNSGME 110 (274)
T ss_dssp HSCEEEEECCCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 4789999876543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.00 E-value=1.1 Score=39.37 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=58.5
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch-----------
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DI----------- 104 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~----------- 104 (256)
+++++||=.|+ |.|..++.+++. .++++++++.+++..+.+++ .|.+. ++.. |+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~-----~Ga~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKN-----GGGIPVAVVSSAQKEAAVRA----LGCDL-VINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCCC-EEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHh----cCCCE-EEeccccccccccccccccc
Confidence 57899999986 234555444443 35789999999988887753 34332 2211 11
Q ss_pred -------hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 105 -------ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 -------~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.........+|+|+-+.. ...+..+.++|+++|+++++.
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTG----------------------------RVTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSC----------------------------HHHHHHHHHHSCTTCEEEESC
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCC----------------------------chHHHHHHHHHhcCCEEEEEe
Confidence 11111112346999987521 134677778999999998854
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.98 E-value=1.3 Score=36.32 Aligned_cols=123 Identities=19% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++.+|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+ +-....+..|+.+... .. .-
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 6788888887665 577777777654 679999999998877654433 4444667777655421 00 12
Q ss_pred CCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++.|++|.|--......-.. ...+-...+... ..-.-.+.+.+.+.|+.+|.++.+.
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN---l~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN---VKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHH---THHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHH---hHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 68999999864432221110 000000000000 0012233566778888999887765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.26 Score=41.65 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhh-cCCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~-~~~~ 115 (256)
+++.+||-.|+ |.|..++.+++. .+++|+++ .+++..+.+++ .|.+. +. .|+.+..... ....
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~-----~Ga~Vi~~-~~~~~~~~~~~----lGa~~--i~~~~~~~~~~~~~~~~~g 216 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALA-----RGARVFAT-ARGSDLEYVRD----LGATP--IDASREPEDYAAEHTAGQG 216 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEE-ECHHHHHHHHH----HTSEE--EETTSCHHHHHHHHHTTSC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHH-----CCCEEEEE-eCHHHHHHHHH----cCCCE--eccCCCHHHHHHHHhcCCC
Confidence 57899999984 345565555554 35689999 88887777654 34332 22 1122222121 1246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. ...+..+.+.|+++|+++.+.
T Consensus 217 ~D~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 217 FDLVYDTLG----------------------------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEEEEESSC----------------------------THHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEECCC----------------------------cHHHHHHHHHHhcCCeEEEEc
Confidence 999987421 134677778999999998753
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.94 E-value=1.2 Score=36.71 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++.+ ....+.+.+.+...+....++.+|+.+... ...
T Consensus 48 ~~k~vlVTGa-s~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4678888885 456677788877654 5689998876 344555555555555555777788765421 100
Q ss_pred -CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 -AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|--....... +....+....+... ..-...+.+.+...++++|+++++..
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN---VFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHH---THHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 1579999998654321110 10000001111000 00123456667778888999888653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=1.6 Score=35.81 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=71.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH-HHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY-AVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~-~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++. ..+.+.+.+...+....++..|+.+... ...
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788888865 55677778877654 578999998765 3444455555555555788888865421 111
Q ss_pred CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|--....... +....+....+... ..-...+++.+.+.++.+|+++.+.
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRIN---IFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHH---THHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 1579999998543321110 00000001111000 0012344666777888899888754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.68 E-value=1.8 Score=34.93 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++. +.+..+...+.+...+....++..|+.+... ...
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRL--GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56788888865 55677777777654 678888775 4555666666666656556788888766421 111
Q ss_pred CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|.-......... ...+....+... ..-.-.+.+.+.+.++++|+++++..
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N---~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLN---TRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 147899998865543222110 000001000000 00122345667777888998888654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=1.5 Score=36.03 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=71.3
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+++ ..++.++++.+.++ +++|+.++.++...+.+.+.....+- ..++..|+.+... ...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLGV-KLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHTC-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888764 46677777777654 67899999987655555554444332 3677788765421 111
Q ss_pred CCCccEEEECCCCCCC----CC-cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 AGLVDVMVVNPPYVPT----PE-DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-+++|++|.|--+... .. .+.........+.. ...-...+.+.+...++.+|+++.+..
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~v---N~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHI---SCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHH---HTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 1579999998654321 00 00000000000000 000123445667777888899888653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=2 Score=37.38 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=62.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+|+ |.++..+++.|.+. +..|+++|.+++.++.+++ .+ ..++.+|..+.. ....-...|+|++
T Consensus 5 ~~viIiG~--Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~----~g--~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 5 MRVIIAGF--GRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK----FG--MKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH----TT--CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CeEEEECC--CHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh----CC--CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 45666665 66777788877653 5689999999999987764 22 368888876642 2222357899988
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+- ......+-...+.+.|+..++.-.
T Consensus 75 ~~~~------------------------~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 75 AIDD------------------------PQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp CCSS------------------------HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCC------------------------hHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5331 112333444556677887777643
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.9 Score=38.89 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=58.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++++|+=+|+ |.++..+++.+.. .+++|+++|.+++..+.+.+.. +........+..+. ... -..+|+|+
T Consensus 164 l~~~~V~ViGa--G~iG~~~a~~l~~--~Ga~V~~~d~~~~~~~~~~~~~---g~~~~~~~~~~~~l-~~~-~~~~DvVi 234 (369)
T 2eez_A 164 VAPASVVILGG--GTVGTNAAKIALG--MGAQVTILDVNHKRLQYLDDVF---GGRVITLTATEANI-KKS-VQHADLLI 234 (369)
T ss_dssp BCCCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHT---TTSEEEEECCHHHH-HHH-HHHCSEEE
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHhc---CceEEEecCCHHHH-HHH-HhCCCEEE
Confidence 35689999998 6777777777653 3569999999998776655422 32211111111111 111 13689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.+...... ..-+.+...+.+++||+++.+.
T Consensus 235 ~~~g~~~~~~---------------------~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 235 GAVLVPGAKA---------------------PKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ECCC----------------------------CCSCHHHHTTSCTTCEEEECC
T ss_pred ECCCCCcccc---------------------chhHHHHHHHhhcCCCEEEEEe
Confidence 8766321000 0011344566789999887644
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.29 Score=41.44 Aligned_cols=94 Identities=12% Similarity=0.148 Sum_probs=54.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CCCccEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~~fD~I 119 (256)
.+|| +-.|+|.++..+.+.+... +++|+++|.+++..+.+++ .|.+ .++.. |+.+...... ...+|+|
T Consensus 166 ~~vl-i~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~-~~~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFV-MTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAA-HVLNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEE-ESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCS-EEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC-EEEECCcHHHHHHHHHHhcCCCCcEE
Confidence 4555 5445555555455444322 5699999999988887764 3433 22222 2222222211 1369999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+-+-. ...+..+.++|+++|+++++.
T Consensus 238 id~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 238 LDAVT----------------------------GPLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp EESSC----------------------------HHHHHHHHHHSCTTCEEEECC
T ss_pred EECCC----------------------------ChhHHHHHhhhcCCCEEEEEe
Confidence 87421 122466778999999999864
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.6 Score=35.08 Aligned_cols=126 Identities=14% Similarity=0.070 Sum_probs=70.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++. .++.++++.+.++ +++|+.+ +.+++..+.+.+.+...+....++..|+.+... ...
T Consensus 7 ~~k~vlVTGas~-GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGR-DIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567888888654 4677777777654 5688887 667776666666665555555788888765421 111
Q ss_pred CCCccEEEECCCCCCC-CCc-ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPT-PED-EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|--.... ... +....+-...+... ..-.-.+.+.+.+.++++|+++.+.
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN---~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVN---LTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 1579999988643211 110 10000000000000 0012344566677777788888765
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.98 E-value=2.2 Score=33.18 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=45.1
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNP 123 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~np 123 (256)
||.|.++..+++.|.+. +..|+++|.+++.++...+. . ...++.+|..+.. ....-..+|+|++..
T Consensus 6 iG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~~---~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 6 IGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAKK---L--KATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp ECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHH---S--SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred ECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHH---c--CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 34588888888887654 56899999999987764432 1 2368888876542 222235789999853
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.92 E-value=2.5 Score=34.24 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=59.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------h--hc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------K--RL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~--~~ 112 (256)
.+++.+|=-|.+.| ++.++++.+.++ +++|+..|.+++.++.+.+.+...+.+...+..|+.+... . ..
T Consensus 7 L~gKvalVTGas~G-IG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARG-LGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 46788888886655 566777777654 6799999999999888877777777666777777655421 1 11
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-++.|++|.|--..
T Consensus 84 ~G~iDiLVNNAG~~ 97 (255)
T 4g81_D 84 GIHVDILINNAGIQ 97 (255)
T ss_dssp TCCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 36899999987544
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.79 E-value=1.9 Score=35.22 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 27 PSPVALITGAG-SGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp CCCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888865 45677777777654 6799999999988777766665444445778888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|--+
T Consensus 104 g~iD~lVnnAg~ 115 (283)
T 3v8b_A 104 GHLDIVVANAGI 115 (283)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999998654
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.59 E-value=0.3 Score=41.42 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE--cchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN--TDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~f 116 (256)
+++.+||=.|++ .|..++.+++. ..+..|++++ +++..+.++ .+.+ .++. .|+.+.......+.+
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~----~g~~~V~~~~-~~~~~~~~~-----~ga~-~~~~~~~~~~~~~~~~~~~g~ 209 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCST----VPNVTVFGTA-STFKHEAIK-----DSVT-HLFDRNADYVQEVKRISAEGV 209 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTT----STTCEEEEEE-CGGGHHHHG-----GGSS-EEEETTSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHH----cCCcEEEEeC-CHHHHHHHH-----cCCc-EEEcCCccHHHHHHHhcCCCc
Confidence 578999999984 34444333332 2356899998 544444433 3332 2222 223232223334579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. ...+..+.++|+++|+++++.
T Consensus 210 Dvv~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 210 DIVLDCLC----------------------------GDNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp EEEEEECC-----------------------------------CTTEEEEEEEEEEC
T ss_pred eEEEECCC----------------------------chhHHHHHHHhhcCCEEEEEC
Confidence 99986311 112366788999999999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.31 E-value=0.71 Score=39.19 Aligned_cols=99 Identities=9% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCC-CEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE------cchhhchhhh
Q 025180 41 HHP-VLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN------TDIASGLEKR 111 (256)
Q Consensus 41 ~~~-~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~------~d~~~~~~~~ 111 (256)
+++ .+||=.|+ |.|..++.+++.+ +++++++.-+++..+..++.+...|.+ .++. .|+.+.....
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLL-----NFNSISVIRDRPNLDEVVASLKELGAT-QVITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-----TCEEEEEECCCTTHHHHHHHHHHHTCS-EEEEHHHHHCGGGHHHHHHH
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHC-----CCEEEEEecCccccHHHHHHHHhcCCe-EEEecCccchHHHHHHHHHH
Confidence 467 89998886 3556666666653 457777765443211111222334543 2222 2222222221
Q ss_pred c---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 L---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. ...+|+|+-.-. -.... .+.++|+++|+++.+.
T Consensus 239 t~~~~~g~Dvvid~~G---------------------------~~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVG---------------------------GKSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp HHHHTCCEEEEEESSC---------------------------HHHHH-HHHHTSCTTCEEEECC
T ss_pred hhccCCCceEEEECCC---------------------------chhHH-HHHHHhccCCEEEEec
Confidence 1 346999987421 12233 5678999999998854
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=90.09 E-value=3.1 Score=33.12 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=53.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcch--hhch--hhh-----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI--ASGL--EKR----- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~--~~~~--~~~----- 111 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.+++..+.+.+.+...+- ...++..|+ .+.. ...
T Consensus 11 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 11 NDRIILVTGAS-DGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 56788877754 55677778877654 67899999999888777666654332 346777777 3221 110
Q ss_pred -cCCCccEEEECCCC
Q 025180 112 -LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -~~~~fD~Ii~npP~ 125 (256)
.-+++|++|.|.-.
T Consensus 88 ~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHCSCCSEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 12579999998654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.05 E-value=3.7 Score=33.18 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=71.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
-.+++||=.|++ |.++.++++.+.++ +++|+.++.+ ....+...+.+...+....++.+|+.+... ...
T Consensus 29 l~gk~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGS-RGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 367888888866 45677777777654 6788888654 455666555665555555778888765421 110
Q ss_pred -CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 -AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|--......... ...+....+... ..-...+++.+.+.++++|+++++.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN---~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVN---FRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 147999999875443221110 000000000000 0012234566677788889888764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.04 E-value=2.5 Score=33.38 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.++...+...+.+...+....++..|+.+... .. ..
T Consensus 4 ~~k~vlITGa-s~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGA-SRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4577887774 566677788877754 6799999999988888777777666666788888765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-+.
T Consensus 81 ~~id~li~~Ag~~ 93 (247)
T 3lyl_A 81 LAIDILVNNAGIT 93 (247)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5789999987554
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.89 Score=36.98 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=38.0
Q ss_pred CCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHc
Q 025180 114 GLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEK 189 (256)
Q Consensus 114 ~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~ 189 (256)
++||+|++|. ||....-.+. ++....+.-+-....+.|+|||.+++...++-. .+.+...+. .
T Consensus 210 grYDlVfvNv~TpyR~HHYQQC------------eDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alA-R 276 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQC------------VDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLG-R 276 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHH------------HHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHH-T
T ss_pred CceeEEEEecCCccccchHHHH------------HHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHH-h
Confidence 7999999986 5532211110 000111223335678899999999997765432 233444443 3
Q ss_pred CCcEEEE
Q 025180 190 GYAARIV 196 (256)
Q Consensus 190 g~~~~~~ 196 (256)
.|....+
T Consensus 277 kF~~~rv 283 (324)
T 3trk_A 277 KFRSSRA 283 (324)
T ss_dssp TEEEEEE
T ss_pred hheeeee
Confidence 4554433
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=2.6 Score=34.25 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC----------------HHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN----------------PYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~----------------~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++||=.|++.| ++.++++.+.++ +++|+.+|.+ ++.++...+.+...+....++..|+.
T Consensus 10 ~~k~~lVTGas~g-IG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAARG-QGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 5678888887655 566777777654 6789999987 66666666555555545577888876
Q ss_pred hchh--hhc------CCCccEEEECCCCC
Q 025180 106 SGLE--KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 106 ~~~~--~~~------~~~fD~Ii~npP~~ 126 (256)
+... ... -+++|++|.|.-+.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 5421 111 15799999987554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=0.34 Score=41.41 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+||=+|+ |.++..+++.+.. .+++|++++.+++..+.+++ ..|.+ .++..+-.+..... .+.+|+|+.
T Consensus 187 ~g~~VlV~Ga--G~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v~~~~~~~~~~~~-~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL--GGLGHVAVKFAKA--FGSKVTVISTSPSKKEEALK---NFGAD-SFLVSRDQEQMQAA-AGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHH---TSCCS-EEEETTCHHHHHHT-TTCEEEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---hcCCc-eEEeccCHHHHHHh-hCCCCEEEE
Confidence 7889999986 4555555554432 25689999999887766553 23432 22221111112221 247999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+-.- ...++.+.+.|+++|+++.+.
T Consensus 258 ~~g~---------------------------~~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 258 TVSA---------------------------VHPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp CCSS---------------------------CCCSHHHHHHEEEEEEEEECC
T ss_pred CCCc---------------------------HHHHHHHHHHHhcCCEEEEEc
Confidence 5321 011345567889999988754
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=89.52 E-value=3 Score=33.53 Aligned_cols=127 Identities=14% Similarity=0.087 Sum_probs=70.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC---HHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc---
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN---PYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL--- 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~---~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~--- 112 (256)
-.+++||=.|++. .++.++++.+.++ +++|+.++.+ .+..+.+.+.+...+....++..|+.+... ...
T Consensus 9 l~~k~vlVTGas~-GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 9 LKNKVIVIAGGIK-NLGALTAKTFALE--SVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp CTTCEEEEETCSS-HHHHHHHHHHTTS--SCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 3567888888664 4677788888754 6789888654 444555555555445445778888765421 111
Q ss_pred ---CCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 ---AGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ---~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|--......... ...+....+.. ...-.-.+.+.+.+.|+++|+++++.
T Consensus 86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~---N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTI---NNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHH---HHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH---HhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 157999999875443221110 00000000000 00012234556667777889888765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.42 Score=40.62 Aligned_cols=96 Identities=16% Similarity=0.053 Sum_probs=55.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+||=+|+| .++..+.+.+.. .+++|+++|.+++..+.+++ ..|.+ .++..+-.+..... .+.+|+|+-
T Consensus 180 ~g~~VlV~GaG--~vG~~a~qlak~--~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~vi~~~~~~~~~~~-~~g~D~vid 250 (357)
T 2cf5_A 180 PGLRGGILGLG--GVGHMGVKIAKA--MGHHVTVISSSNKKREEALQ---DLGAD-DYVIGSDQAKMSEL-ADSLDYVID 250 (357)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHH--HTCEEEEEESSTTHHHHHHT---TSCCS-CEEETTCHHHHHHS-TTTEEEEEE
T ss_pred CCCEEEEECCC--HHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH---HcCCc-eeeccccHHHHHHh-cCCCCEEEE
Confidence 78999999864 444444443332 24689999999877766552 23433 23222111111121 246999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.- ...+..+.++|+++|+++++.
T Consensus 251 ~~g~---------------------------~~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 251 TVPV---------------------------HHALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CCCS---------------------------CCCSHHHHTTEEEEEEEEECS
T ss_pred CCCC---------------------------hHHHHHHHHHhccCCEEEEeC
Confidence 4221 012455667899999998754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.14 E-value=2.8 Score=34.31 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh--hhc----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE--KRL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~---- 112 (256)
.+++||=.|++ |.++.++++.+.+++. .+.|+.++.+++.++.+.+.+... +....++..|+.+... ...
T Consensus 32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56888888865 4556667776654322 348999999998888777766554 3344777888765431 111
Q ss_pred --CCCccEEEECCCC
Q 025180 113 --AGLVDVMVVNPPY 125 (256)
Q Consensus 113 --~~~fD~Ii~npP~ 125 (256)
-+++|++|.|--.
T Consensus 111 ~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 111 QEFKDIDILVNNAGK 125 (287)
T ss_dssp GGGCSCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 1479999998654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.10 E-value=2.4 Score=34.27 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh-------c
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR-------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~-------~ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++.++.+.+.+...+....++..|+.+... .. .
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888885 566677788877654 5789999999887776666555545455777888765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
.+.+|++|.|--..
T Consensus 97 ~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 97 DGKLNILVNNAGVV 110 (273)
T ss_dssp TSCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 26899999986543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=2.3 Score=34.01 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------- 112 (256)
.+++||=.|+ +|.++.++++.|.++ +++|++++.+++..+.+.+.+...+....++.+|+.+... ...
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4677887775 566677788877654 5789999999887776655555444444777888765421 111
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
.+.+|++|.|--..
T Consensus 85 ~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 85 HGKLNILVNNAGIV 98 (260)
T ss_dssp TTCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 16799999986543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.03 E-value=3.3 Score=33.43 Aligned_cols=83 Identities=23% Similarity=0.213 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-------------CHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-------------NPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-------------~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|. +++.++...+.+...+....++..|+.+..
T Consensus 10 ~~k~~lVTGas-~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAA-RGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 56788877865 45566777777654 678999998 677776666666555555577788876542
Q ss_pred h--hhc------CCCccEEEECCCCCC
Q 025180 109 E--KRL------AGLVDVMVVNPPYVP 127 (256)
Q Consensus 109 ~--~~~------~~~fD~Ii~npP~~~ 127 (256)
. ... -+++|++|.|--...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 111 157999999875543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.00 E-value=5.8 Score=32.44 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++.| ++.++++.+.++ +++|+++|.+ ++.++.+.+.+...+....++..|+.+...
T Consensus 27 ~gk~~lVTGas~G-IG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 27 EGKVAFITGAARG-QGRSHAITLARE--GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHC--CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 5678888887654 567777777654 6799999987 666666666666656555788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025180 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|--..
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 111 15799999986543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.90 E-value=3.7 Score=33.12 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.++++|=.|++. .++.++++.+.++ +++|+.++ .++...+...+.+...+....++..|+.+... ...
T Consensus 26 ~~k~~lVTGas~-GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGASR-GIGAAIAARLASD--GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCSS-HHHHHHHHHHHHH--TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467788777654 5566777776654 56787774 45666666666666555555777888765421 111
Q ss_pred CCCccEEEECCCCCCCCCcccc-cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVG-REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+++|++|.|--.......... ...-...+.. ...-...+++.+.+.++++|+++.+.
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~v---N~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAV---NLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHH---HHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1579999998755432221100 0000000000 00011234556677778889888765
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.52 E-value=2.9 Score=33.41 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---c
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++.+++..+.+.+.+...+....++..|+.+... .. .
T Consensus 4 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 4 NGQVCVVTGA-SRGIGRGIALQLCKA--GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4567777774 566778888887754 5789999999887776666555444444677888765421 11 0
Q ss_pred CCCccEEEECC
Q 025180 113 AGLVDVMVVNP 123 (256)
Q Consensus 113 ~~~fD~Ii~np 123 (256)
.+++|++|.|-
T Consensus 81 ~g~id~lvnnA 91 (260)
T 2qq5_A 81 QGRLDVLVNNA 91 (260)
T ss_dssp TTCCCEEEECC
T ss_pred CCCceEEEECC
Confidence 35789999986
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.45 E-value=6.4 Score=31.22 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C-CcceEEEcchhhchh--hhc----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N-VHADLINTDIASGLE--KRL---- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~-~~~~~~~~d~~~~~~--~~~---- 112 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+.+.+.+... + ....++..|+.+... ...
T Consensus 6 ~~k~~lVTGas-~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 6 QKGLAIITGAS-QGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp CCCEEEEESTT-SHHHHHHHHHHHHH--TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 56778877765 45566777777654 569999999998888777766554 2 233778888765421 110
Q ss_pred --CCCccEEEECCCCC
Q 025180 113 --AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 --~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 83 ~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHCCEEEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 15799999987553
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=0.62 Score=41.63 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+ |.++..+++.+.. .+++|+++|.++...+.+++ .|.. + .++.+.. ...|+|+
T Consensus 272 l~GktV~IiG~--G~IG~~~A~~lka--~Ga~Viv~d~~~~~~~~A~~----~Ga~--~--~~l~e~l-----~~aDvVi 334 (494)
T 3ce6_A 272 IGGKKVLICGY--GDVGKGCAEAMKG--QGARVSVTEIDPINALQAMM----EGFD--V--VTVEEAI-----GDADIVV 334 (494)
T ss_dssp CTTCEEEEECC--SHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TTCE--E--CCHHHHG-----GGCSEEE
T ss_pred CCcCEEEEEcc--CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCCE--E--ecHHHHH-----hCCCEEE
Confidence 47899999987 5677767776653 35699999999987766543 3432 2 2333321 3689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 174 (256)
...+-. .++ ....+.+|+||+++.+..
T Consensus 335 ~atgt~---------------------------~~i~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 335 TATGNK---------------------------DIIMLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp ECSSSS---------------------------CSBCHHHHHHSCTTCEEEECSS
T ss_pred ECCCCH---------------------------HHHHHHHHHhcCCCcEEEEeCC
Confidence 853210 111 234556899999987543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.34 E-value=7.8 Score=30.36 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcch--hhch------hhh-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDI--ASGL------EKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~--~~~~------~~~- 111 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.++...+.+.+.+...+. ...++..|+ .+.. ...
T Consensus 13 ~~k~vlITGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 13 KGRVILVTGAA-RGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 56788877765 66677788877654 56899999999988887777766553 336666665 2211 110
Q ss_pred -cCCCccEEEECCCCC
Q 025180 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 90 ~~~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 90 HEFGRLDGLLHNASII 105 (247)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HhCCCCCEEEECCccC
Confidence 014799999987653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.24 E-value=2.6 Score=34.10 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
-+++.+|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.+..++..|+.+... .. .
T Consensus 5 L~gKvalVTGas~G-IG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSG-IGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46888888886665 466677776643 6799999999999988888888777666788888765421 00 1
Q ss_pred CCCccEEEECCC
Q 025180 113 AGLVDVMVVNPP 124 (256)
Q Consensus 113 ~~~fD~Ii~npP 124 (256)
-++.|+++.|--
T Consensus 82 ~G~iDiLVNNAG 93 (254)
T 4fn4_A 82 YSRIDVLCNNAG 93 (254)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCc
Confidence 268999999864
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.16 E-value=1.3 Score=35.78 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHH-HHHHHHHHHHcCCcceEEEcchhhchh--hhc-----
Q 025180 42 HPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNVHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGc-G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~-i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|+ |+|.++.++++.+.++ +++|+.++.++.. .+...+ ..+....++..|+.+... ...
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRITD---RLPAKAPLLELDVQNEEHLASLAGRVTE 80 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHT---TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHC--CCEEEEEecChHHHHHHHHH---hcCCCceEEEccCCCHHHHHHHHHHHHH
Confidence 4678898898 4788888888888754 5789999987653 232222 222233677788765421 111
Q ss_pred -CC---CccEEEECCCC
Q 025180 113 -AG---LVDVMVVNPPY 125 (256)
Q Consensus 113 -~~---~fD~Ii~npP~ 125 (256)
-+ ++|++|.|--.
T Consensus 81 ~~g~~~~iD~lv~nAg~ 97 (269)
T 2h7i_A 81 AIGAGNKLDGVVHSIGF 97 (269)
T ss_dssp HHCTTCCEEEEEECCCC
T ss_pred HhCCCCCceEEEECCcc
Confidence 13 79999998654
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.16 E-value=1.1 Score=38.11 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=42.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc--hhhchhhhcCC-Ccc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD--IASGLEKRLAG-LVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d--~~~~~~~~~~~-~fD 117 (256)
+++.+||=.|+| .++..+.+.+.. .++++|+++|.+++..+.+++ .|.+ .++..+ +.+.......+ .+|
T Consensus 185 ~~g~~VlV~GaG--~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~v~~~~~g~g~D 256 (359)
T 1h2b_A 185 YPGAYVAIVGVG--GLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LGAD-HVVDARRDPVKQVMELTRGRGVN 256 (359)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCHHHHHHHHTTTCCEE
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCCC-EEEeccchHHHHHHHHhCCCCCc
Confidence 578999999984 344444443322 225689999999988887753 3433 222211 11222222223 699
Q ss_pred EEEEC
Q 025180 118 VMVVN 122 (256)
Q Consensus 118 ~Ii~n 122 (256)
+|+-.
T Consensus 257 vvid~ 261 (359)
T 1h2b_A 257 VAMDF 261 (359)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99874
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=2.2 Score=36.56 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
-++++|+=+|+ |.++..+++.+.. -+++|+++|.+++..+.+++
T Consensus 166 l~g~~V~ViG~--G~iG~~~a~~a~~--~Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 166 VEPADVVVIGA--GTAGYNAARIANG--MGATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp BCCCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHH
Confidence 36789999997 6677777776653 35699999999988776654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.10 E-value=10 Score=31.31 Aligned_cols=92 Identities=17% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCCCEEEEec-cc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVG-CG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlG-cG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+||=.| +| .|..++.+++. .+++|++++ +++..+.+++ .|.+ .++..+-.+.... .-..+|+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~-----~Ga~vi~~~-~~~~~~~~~~----lGa~-~~i~~~~~~~~~~-~~~g~D~ 218 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQ-----KGTTVITTA-SKRNHAFLKA----LGAE-QCINYHEEDFLLA-ISTPVDA 218 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEE-CHHHHHHHHH----HTCS-EEEETTTSCHHHH-CCSCEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHH-----cCCEEEEEe-ccchHHHHHH----cCCC-EEEeCCCcchhhh-hccCCCE
Confidence 5789999886 33 46666666554 256899987 4544555543 4543 2332221110111 1146999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+-.-. -.. +..+.++|+++|+++.+
T Consensus 219 v~d~~g---------------------------~~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 219 VIDLVG---------------------------GDV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEESSC---------------------------HHH-HHHHGGGEEEEEEEEEC
T ss_pred EEECCC---------------------------cHH-HHHHHHhccCCCEEEEe
Confidence 987421 122 37788999999999974
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=5.1 Score=32.43 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=68.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH-HHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY-AVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~-~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.++. ..+.+.+.+...+....++..|+.+... ...
T Consensus 28 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 28 EGKVALVTGA-GRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4677877776 456777788887754 678999988754 3444444454445445677788754321 100
Q ss_pred CCCccEEEECCCCCCCCCcc-cccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDE-VGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.|--+....... ....+....+... ..-...+++.+.+.|+.+|+++++.
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN---TRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHh---hHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 14789999986543221110 0000000000000 0012234456666667778888765
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=4 Score=32.91 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=50.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|++ +|.++.++++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... .. .
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888886 477888888888754 5789999988752222222212222 23677778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|--..
T Consensus 82 ~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 82 LGSLDFIVHSVAFA 95 (275)
T ss_dssp TSCEEEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 25789999986543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.00 E-value=4 Score=27.72 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=48.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
...+|+=+|+ |.++..++..+.+.+ ...|+++|.++...+.+. .....+...|+.+.. ... -..+|+|
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~-~~~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSS-NYSVTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKA-LGGFDAV 73 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHH-HcCCCEE
Confidence 3568888888 777777777766542 268999999988766544 122356666765431 121 2468999
Q ss_pred EECCCC
Q 025180 120 VVNPPY 125 (256)
Q Consensus 120 i~npP~ 125 (256)
+...|+
T Consensus 74 i~~~~~ 79 (118)
T 3ic5_A 74 ISAAPF 79 (118)
T ss_dssp EECSCG
T ss_pred EECCCc
Confidence 987664
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.95 E-value=4.5 Score=32.65 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC-------------CHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-------------NPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-------------~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
.+++||=.|++. .++.++++.+.++ +++|+++|. +++.++.+.+.+...+....++..|+.+..
T Consensus 14 ~gk~~lVTGas~-gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 14 QGRVAFITGAAR-GQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDA 90 (280)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 567888777664 5567777777654 679999997 677777766666655555577888876542
Q ss_pred h--hhc------CCCccEEEECCCCC
Q 025180 109 E--KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 109 ~--~~~------~~~fD~Ii~npP~~ 126 (256)
. ... -+++|++|.|--..
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 1 111 15799999987554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.94 E-value=1.4 Score=39.01 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=48.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+= ||.|.++..+++.|..+ +..|+.+|.+++.++.+.+.+ +..++.+|..+.. ....-+..|++++
T Consensus 4 M~iiI--~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 4 MKIII--LGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEE--ECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred CEEEE--ECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 34544 45567777889988643 568999999999988776543 3478889987652 2323467999988
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.74 E-value=4.9 Score=32.26 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+ +.+++..+...+.+...+....++..|+.+... ...
T Consensus 25 ~~k~vlITGa-s~gIG~a~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 25 DTPVVLVTGG-SRGIGAAVCRLAARQ--GWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CSCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567777775 556677788877654 5678666 677777777766666655555788888765421 110
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+.+|++|.|.-+.
T Consensus 102 ~g~id~li~nAg~~ 115 (272)
T 4e3z_A 102 FGRLDGLVNNAGIV 115 (272)
T ss_dssp HSCCCEEEECCCCC
T ss_pred CCCCCEEEECCCCC
Confidence 14789999987554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.60 E-value=1.3 Score=37.68 Aligned_cols=94 Identities=14% Similarity=0.069 Sum_probs=55.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+ |.|..++.+++. .+++|++++ +++..+.++ ..|.+ .++.. ++.+.... ...
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~-----~Ga~Vi~~~-~~~~~~~~~----~lGa~-~v~~~~~~~~~~~~~~--~~g 248 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKA-----WDAHVTAVC-SQDASELVR----KLGAD-DVIDYKSGSVEEQLKS--LKP 248 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEE-CGGGHHHHH----HTTCS-EEEETTSSCHHHHHHT--SCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHh-----CCCEEEEEe-ChHHHHHHH----HcCCC-EEEECCchHHHHHHhh--cCC
Confidence 57889999983 345555555554 246899998 666555553 34433 22221 22222211 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-+-. + ....+....+.|+++|+++.+.
T Consensus 249 ~D~vid~~g--------------------~------~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 249 FDFILDNVG--------------------G------STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp BSEEEESSC--------------------T------THHHHGGGGBCSSSCCEEEESC
T ss_pred CCEEEECCC--------------------C------hhhhhHHHHHhhcCCcEEEEeC
Confidence 999987421 0 0123567778999999998743
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.57 E-value=6.5 Score=34.85 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=65.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCC--------cceE-EEcchhhchhhh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNV--------HADL-INTDIASGLEKR 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~--------~~~~-~~~d~~~~~~~~ 111 (256)
.+|.=+|+|. ++..++..+.+.+++..|+++|.+++.++..++... ..++ ...+ ...|..+..
T Consensus 10 mkI~VIG~G~--vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~--- 84 (481)
T 2o3j_A 10 SKVVCVGAGY--VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAI--- 84 (481)
T ss_dssp CEEEEECCST--THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH---
T ss_pred CEEEEECCCH--HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHh---
Confidence 4677777653 444455555544556789999999998876543100 0000 0011 112222211
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE-EeCCCCHHHHHHHHHH-c
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV-TLTANDPSQICLQMME-K 189 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~-~ 189 (256)
...|+|+..-|-....+...... ..........++.+.+.|++|..++.. +......+.+.+.+.+ .
T Consensus 85 --~~aDvvii~Vptp~~~~g~~~~~---------~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~ 153 (481)
T 2o3j_A 85 --AEADLIFISVNTPTKMYGRGKGM---------APDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQ 153 (481)
T ss_dssp --HHCSEEEECCCCCBCCSSTTTTT---------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHT
T ss_pred --hcCCEEEEecCCccccccccccC---------CCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhh
Confidence 24799998644221100000000 011223566778888889887766542 2222334556666766 4
Q ss_pred C
Q 025180 190 G 190 (256)
Q Consensus 190 g 190 (256)
+
T Consensus 154 ~ 154 (481)
T 2o3j_A 154 K 154 (481)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.44 E-value=5.3 Score=28.99 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEE
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii 120 (256)
.+|+=+| .|.++..+++.|.+. +..|+++|.+ ++..+...... .....++.+|..+.. ....-...|+|+
T Consensus 4 ~~vlI~G--~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 4 DHFIVCG--HSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp SCEEEEC--CSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CcEEEEC--CCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 4566565 488888888887653 4689999997 45444433321 112378888876442 221235789999
Q ss_pred ECC
Q 025180 121 VNP 123 (256)
Q Consensus 121 ~np 123 (256)
+..
T Consensus 77 ~~~ 79 (153)
T 1id1_A 77 ALS 79 (153)
T ss_dssp ECS
T ss_pred Eec
Confidence 853
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=87.31 E-value=3.5 Score=32.93 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=50.7
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ +|.++.++++.+.++ +++|+.++.++...+.+++.....+ ...++..|+.+... ...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888886 377788888887655 5689999988752222222222222 13677788765421 111
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+.+|++|.|.-..
T Consensus 84 ~g~iD~lv~~Ag~~ 97 (261)
T 2wyu_A 84 FGGLDYLVHAIAFA 97 (261)
T ss_dssp HSSEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14789999986543
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=87.07 E-value=8.1 Score=31.92 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=54.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC------------HHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN------------PYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~------------~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+++||=.|++ |.++.++++.+.++ +++|+++|.+ ++.++...+.+...+....++..|+.+...
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQD--GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHT--TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 56788877765 45567777777654 6789999876 666666666665556555788888765421
Q ss_pred --hhc------CCCccEEEECCCCC
Q 025180 110 --KRL------AGLVDVMVVNPPYV 126 (256)
Q Consensus 110 --~~~------~~~fD~Ii~npP~~ 126 (256)
... -+++|++|.|--+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 111 15799999986543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=5.9 Score=30.87 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=55.1
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCcceEEEcchhhchh--hhcC------
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVHADLINTDIASGLE--KRLA------ 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--~~~~------ 113 (256)
+++||=.|+ +|.++.++++.+.++ +++|+.++.+++..+.+.+.+. ..+....++..|+.+... ...+
T Consensus 2 ~k~vlITGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGA-SRGIGEAIARALARD--GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 456776775 456777788887754 5689999999888776666554 445555788888865431 1111
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 79 g~id~li~~Ag~~ 91 (235)
T 3l77_A 79 GDVDVVVANAGLG 91 (235)
T ss_dssp SSCSEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999987543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.93 E-value=6.6 Score=31.80 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++..+.+.+.+ +....++..|+.+... ... -
T Consensus 28 ~gk~vlVTGas-~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAG-AGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTT-STHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788877765 44566677776654 679999999988776655443 4444777888765421 100 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|--..
T Consensus 102 g~iD~lvnnAg~~ 114 (277)
T 3gvc_A 102 GGVDKLVANAGVV 114 (277)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999986544
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=86.93 E-value=7.5 Score=30.91 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+|.+++..+...+.+ +....++..|+.+... .. .-
T Consensus 7 ~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGS-ARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5678887785 466677788877654 678999999988766554433 3334777888765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|--..
T Consensus 81 g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 81 GGLDILVNNAALF 93 (259)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 4799999987554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=86.93 E-value=5.8 Score=34.99 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=64.8
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH------------HHHcCCcceE-EEcchhhchhh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT------------LEAHNVHADL-INTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~------------~~~~~~~~~~-~~~d~~~~~~~ 110 (256)
.+|.=+|+| .++..++..+.+.+++..|+++|.+++.++..++. +.... ...+ ...|..+..
T Consensus 6 mkI~VIG~G--~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~-~~~~~~t~~~~e~~-- 80 (467)
T 2q3e_A 6 KKICCIGAG--YVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR-GKNLFFSTNIDDAI-- 80 (467)
T ss_dssp CEEEEECCS--TTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHB-TTTEEEESCHHHHH--
T ss_pred cEEEEECCC--HHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhh-cCCEEEECCHHHHH--
Confidence 467767665 44444566555444466899999999887764321 11100 0011 122322221
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHHc
Q 025180 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMMEK 189 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~ 189 (256)
...|+|+..-|-...... ...+...........++.+...|++|..++..+ ......+.+.+.+.+.
T Consensus 81 ---~~aDvViiaVptp~~~~~---------v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~ 148 (467)
T 2q3e_A 81 ---KEADLVFISVNTPTKTYG---------MGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDAN 148 (467)
T ss_dssp ---HHCSEEEECCCCCBCCSS---------TTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHT
T ss_pred ---hcCCEEEEEcCCchhhcc---------ccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHh
Confidence 247999986542111100 000001122335667777888888876654421 1222334566666665
Q ss_pred C
Q 025180 190 G 190 (256)
Q Consensus 190 g 190 (256)
+
T Consensus 149 ~ 149 (467)
T 2q3e_A 149 T 149 (467)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.92 E-value=2.2 Score=34.77 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+....++..|+.+... ... -
T Consensus 7 ~gk~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 7 EGKIAIVTGAS-SGIGRAAALLFARE--GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56778877765 55677777777654 6789999999988877766665444444677778765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|--..
T Consensus 84 g~iD~lvnnAg~~ 96 (280)
T 3tox_A 84 GGLDTAFNNAGAL 96 (280)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999986543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=6.5 Score=31.95 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=64.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---------CCcc--------e-EEEcchh
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------NVHA--------D-LINTDIA 105 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------~~~~--------~-~~~~d~~ 105 (256)
++|.=+|+ |.++..++..+.+. +..|+.+|.+++.++.+.+.+... ++.. . ....|..
T Consensus 5 ~kV~VIGa--G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGT--GVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CEEEEECC--CHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 45666665 55666667666543 568999999999988887764321 1110 0 1122332
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
+. -...|+||..-|- ..+....+++++...++++.+++-.+.+. ...++.+.
T Consensus 81 ~~-----~~~aDlVi~av~~----------------------~~~~~~~v~~~l~~~~~~~~il~s~tS~~-~~~~la~~ 132 (283)
T 4e12_A 81 QA-----VKDADLVIEAVPE----------------------SLDLKRDIYTKLGELAPAKTIFATNSSTL-LPSDLVGY 132 (283)
T ss_dssp HH-----TTTCSEEEECCCS----------------------CHHHHHHHHHHHHHHSCTTCEEEECCSSS-CHHHHHHH
T ss_pred HH-----hccCCEEEEeccC----------------------cHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhh
Confidence 22 1468999986541 12345677888888899888765433322 34444444
Q ss_pred H
Q 025180 186 M 186 (256)
Q Consensus 186 ~ 186 (256)
+
T Consensus 133 ~ 133 (283)
T 4e12_A 133 T 133 (283)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=4.6 Score=33.59 Aligned_cols=93 Identities=20% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh-chhhhcCCCccEEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS-GLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~fD~Ii~ 121 (256)
..+|.=||+ |.++-.++..+.+.+....|+++|.+++.++.+.+ .|.. .-...|..+ .. ...|+|+.
T Consensus 33 ~~kI~IIG~--G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~-~~~~~~~~~~~~-----~~aDvVil 100 (314)
T 3ggo_A 33 MQNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII-DEGTTSIAKVED-----FSPDFVML 100 (314)
T ss_dssp CSEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC-SEEESCTTGGGG-----GCCSEEEE
T ss_pred CCEEEEEee--CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCc-chhcCCHHHHhh-----ccCCEEEE
Confidence 367887875 55665666666544333389999999988776653 2322 112233333 21 35799997
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.-|-. ....+++++...|+++.+++-
T Consensus 101 avp~~------------------------~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 101 SSPVR------------------------TFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp CSCGG------------------------GHHHHHHHHHHHSCTTCEEEE
T ss_pred eCCHH------------------------HHHHHHHHHhhccCCCcEEEE
Confidence 54410 145677888888998876654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=86.66 E-value=6.1 Score=32.01 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=52.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHH-HcCCcceEEEcchhh----ch--hhhc-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLE-AHNVHADLINTDIAS----GL--EKRL- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~-~~~~~~~~~~~d~~~----~~--~~~~- 112 (256)
.+++||=.|++ |.++.++++.|.++ +++|+.++.++ +..+.+.+.+. ..+....++..|+.+ .. ....
T Consensus 22 ~~k~~lVTGas-~gIG~aia~~L~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 22 EAPAAVVTGAA-KRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp CCCEEEETTCS-SHHHHHHHHHHHHH--TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence 45777777755 56677777777654 56899999887 66655555554 334344777888776 21 1111
Q ss_pred -----CCCccEEEECCCC
Q 025180 113 -----AGLVDVMVVNPPY 125 (256)
Q Consensus 113 -----~~~fD~Ii~npP~ 125 (256)
-+++|++|.|--.
T Consensus 99 ~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 1479999998654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.66 E-value=4.1 Score=32.39 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=53.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------CCC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------AGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~~~ 115 (256)
++||=.|+ +|.++.++++.+.++ +++|++++.+++..+...+.+...+....++..|+.+... ... -+.
T Consensus 3 k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 3 KVALVTGA-GQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 56676664 566777788877654 5789999999887776666555444445677788765421 111 147
Q ss_pred ccEEEECCCC
Q 025180 116 VDVMVVNPPY 125 (256)
Q Consensus 116 fD~Ii~npP~ 125 (256)
+|++|.|--+
T Consensus 80 id~lv~nAg~ 89 (256)
T 1geg_A 80 FDVIVNNAGV 89 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999998654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.63 E-value=3.3 Score=33.74 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc-h--hhhc-----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG-L--EKRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~-~--~~~~----- 112 (256)
.+++||=.|++ |.++.++++.|.++ +++|++++.++...+.+.+.+...+- ...++..|+.+. . ....
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 46778877765 56777788887654 67999999999887777666654432 347888888765 1 1111
Q ss_pred -CCCccEEEECCCCC
Q 025180 113 -AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 -~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|--..
T Consensus 88 ~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 88 HFGKLDILVNNAGVA 102 (311)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred hCCCCCEEEECCccc
Confidence 15799999987554
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.13 E-value=3.4 Score=33.76 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=55.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----cCCcceEEEcchhhchh--hhcC-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-----HNVHADLINTDIASGLE--KRLA- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~- 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.++...+.+.+.+.. .+....++.+|+.+... ...+
T Consensus 17 ~~k~vlVTGa-sggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 17 QGQVAIVTGG-ATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 4678887775 577788888887654 56899999998877766666554 23334778888765421 1111
Q ss_pred -----CCccEEEECCCC
Q 025180 114 -----GLVDVMVVNPPY 125 (256)
Q Consensus 114 -----~~fD~Ii~npP~ 125 (256)
+++|++|.|--.
T Consensus 94 ~~~~~g~id~li~~Ag~ 110 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGG 110 (303)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 469999998653
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=86.10 E-value=4.7 Score=32.28 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+...+.+...+ ...++.+|+.+... ... -
T Consensus 15 ~~k~vlITGa-sggiG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 15 QDKVAIITGG-AGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TTCEEEEEST-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEcCChhHHHHHHHHhCCCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678887775 567788888877654 5689999998876554433331111 33778888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-.
T Consensus 91 ~~id~li~~Ag~ 102 (278)
T 2bgk_A 91 GKLDIMFGNVGV 102 (278)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 479999987644
|
| >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28 | Back alignment and structure |
|---|
Probab=86.06 E-value=5.4 Score=32.74 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCcceEE--EcchhhchhhhcCCCccEEEECCCCCCCCCccc--ccccchhhhcCCCCcHHHHHHH
Q 025180 80 PYAVEVTRKTLEAHNVHADLI--NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEV--GREGIASAWAGGENGRAVIDKI 155 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
++.+..+.+.++ ...+. +.|+.+.+... ..=|+|.++|||...+.... .+. ....+.+...++
T Consensus 156 ~~~l~~~~~~l~----~v~i~~~~~Df~~~i~~~--~~~~fvY~DPPY~~~~~~~~f~~Y~-------~~~f~~~dh~~L 222 (284)
T 2dpm_A 156 EELISAISVYIN----NNQLEIKVGDFEKAIVDV--RTGDFVYFDPPYIPLSETSAFTSYT-------HEGFSFADQVRL 222 (284)
T ss_dssp HHHHHHHHHHHH----HSEEEEEESCGGGGGTTC--CTTCEEEECCCCCCC-----CCCCC-------CSSCCHHHHHHH
T ss_pred HHHHHHHHHHhC----CCEEEEeCCCHHHHHHhc--CCCCEEEeCCCcccccCCCCccccc-------cCCCCHHHHHHH
Confidence 344554444443 23666 99999987653 33489999999987433211 010 011233445666
Q ss_pred HHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025180 156 LPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 156 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
.+.+.++=+.||.++++.. . ...+.+++. +|...
T Consensus 223 ~~~l~~l~~~g~~~~lS~~-d--~~~i~~ly~--~~~i~ 256 (284)
T 2dpm_A 223 RDAFKRLSDTGAYVMLSNS-S--SALVEELYK--DFNIH 256 (284)
T ss_dssp HHHHHHHHTTTCEEEEEEE-S--CHHHHHHTT--TSEEE
T ss_pred HHHHHHHHhcCCEEEEEcC-C--CHHHHHHHc--CCeEE
Confidence 6666655455777777543 2 245555553 45543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=4 Score=35.01 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=69.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
-+.+||.++-+.|..+..+ .++.+++.+.-+--.... +..+|++... .+-.+ ..+..||+|+.
T Consensus 45 ~~~~~l~~n~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~----l~~~~~~~~~--~~~~~----~~~~~~d~v~~ 107 (381)
T 3dmg_A 45 FGERALDLNPGVGWGSLPL-------EGRMAVERLETSRAAFRC----LTASGLQARL--ALPWE----AAAGAYDLVVL 107 (381)
T ss_dssp CSSEEEESSCTTSTTTGGG-------BTTBEEEEEECBHHHHHH----HHHTTCCCEE--CCGGG----SCTTCEEEEEE
T ss_pred hCCcEEEecCCCCcccccc-------CCCCceEEEeCcHHHHHH----HHHcCCCccc--cCCcc----CCcCCCCEEEE
Confidence 3478999999999743222 134578887655444333 5667776522 11111 12468999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
-.|=. ++.......|.++...|++||.+++........+.+.+.+..
T Consensus 108 ~~Pk~--------------------k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~ 154 (381)
T 3dmg_A 108 ALPAG--------------------RGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARA 154 (381)
T ss_dssp ECCGG--------------------GCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHH
T ss_pred ECCcc--------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHh
Confidence 66610 112235677888999999999999977655555666666653
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=85.96 E-value=3.6 Score=32.83 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------- 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------- 112 (256)
.+++||=.|+ +|.++.++++.|.++ ++.|++++.++...+...+.+...+....++..|+.+... ...
T Consensus 13 ~~k~vlITGa-sggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 13 KAKTVLVTGG-TKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577887765 566777888877654 5689999999887776666555545445777788765421 111
Q ss_pred CCCccEEEECCCC
Q 025180 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
.+.+|++|.|--.
T Consensus 90 ~~~id~li~~Ag~ 102 (266)
T 1xq1_A 90 GGKLDILINNLGA 102 (266)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCCcEEEECCCC
Confidence 1578999987543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.91 E-value=4.3 Score=34.49 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|+=+|+ |.++..+++.+... +++|+++|.+++..+.+++.... .......+..+..... ..+|+||.
T Consensus 166 ~~~~VlViGa--GgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~DvVI~ 236 (361)
T 1pjc_A 166 KPGKVVILGG--GVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS---RVELLYSNSAEIETAV--AEADLLIG 236 (361)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG---GSEEEECCHHHHHHHH--HTCSEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc---eeEeeeCCHHHHHHHH--cCCCEEEE
Confidence 4589999998 55555566655432 45999999999888777654321 1112222211111111 36899997
Q ss_pred CCC
Q 025180 122 NPP 124 (256)
Q Consensus 122 npP 124 (256)
..+
T Consensus 237 ~~~ 239 (361)
T 1pjc_A 237 AVL 239 (361)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=85.87 E-value=12 Score=29.86 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCC-cceEEEcchhhchh--hh------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNV-HADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~-~~~~~~~d~~~~~~--~~------ 111 (256)
.+++||=.|++. .++.++++.+.++ +++|+.++.+++..+.+.+.+.. .+- ...++..|+.+... ..
T Consensus 7 ~~k~~lVTGas~-GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 7 SEAVAVVTGGSS-GIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567888888665 4677777777654 67899999999888777766654 332 24777788765421 10
Q ss_pred cCCCccEEEECCCCC
Q 025180 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 84 ~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 84 TLGCASILVNNAGQG 98 (265)
T ss_dssp HHCSCSEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 015789999987553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.84 E-value=3.7 Score=32.51 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.+|.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 8 ~~k~vlITGa-s~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGS-GGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678888885 456677788877754 5789999999998888777776655555788888866421 111 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-.
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999998654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.74 E-value=6.8 Score=31.69 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+++ |.++.++++.+.++ +++|++++.++...+.+++.....+ ...++.+|+.+... .. .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHRE--GAQLAFTYATPKLEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888888763 67788888887754 5789999988752222222212222 13677788765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+.+|++|.|--..
T Consensus 97 ~g~iD~lv~~Ag~~ 110 (285)
T 2p91_A 97 WGSLDIIVHSIAYA 110 (285)
T ss_dssp TSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 25799999987543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=85.58 E-value=4.9 Score=32.13 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025180 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+++ |.++.++++.+.++ +++|+.++.++...+.+++.....+. ..++..|+.+... .. .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGS-DIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTC-CCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHHhcCC-cEEEEccCCCHHHHHHHHHHHHHH
Confidence 467888888763 77888888887754 57899999876222222222122221 2677778765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|--..
T Consensus 85 ~g~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 85 WPKFDGFVHSIGFA 98 (265)
T ss_dssp CSSEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 24789999986543
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=85.49 E-value=5.4 Score=32.47 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=43.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHH-HcCCcceEEEcchhhc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLE-AHNVHADLINTDIASG 107 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~ 107 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++ .+++..+.+.+.+. ..+....++..|+.+.
T Consensus 8 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 8 TVPVALVTGAA-KRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp CCCEEEETTCS-SHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 45777777755 55777888877654 57899999 99887776666654 3444446777777654
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.48 E-value=0.47 Score=40.75 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=45.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~f 116 (256)
.++.+||=+|.|+|.++..+.+.+... +++|++++.+++..+.+++ .|.+ .++. .|+.+...... ...+
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~~~~~~~~~~~~~v~~~t~~~g~ 241 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAV-HVCNAASPTFMQDLTEALVSTGA 241 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCS-CEEETTSTTHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCc-EEEeCCChHHHHHHHHHhcCCCc
Confidence 478889988767666665555544322 5689999999998887764 3443 2332 22222222211 1369
Q ss_pred cEEEEC
Q 025180 117 DVMVVN 122 (256)
Q Consensus 117 D~Ii~n 122 (256)
|+|+-+
T Consensus 242 d~v~d~ 247 (379)
T 3iup_A 242 TIAFDA 247 (379)
T ss_dssp CEEEES
T ss_pred eEEEEC
Confidence 999874
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=85.20 E-value=3.6 Score=32.90 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++-+++..+...+.+...+....++..|+.+... ... -
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 56788877754 56777788877654 6789999999988888777776666555788888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 105 g~id~lv~~Ag~ 116 (262)
T 3rkr_A 105 GRCDVLVNNAGV 116 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 579999998754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=84.99 E-value=6.6 Score=31.89 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchh--hh------c
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~--~~------~ 112 (256)
.+++||=.|+ +|.++..+++.|.++ +++|++++.++...+...+.+... +....++.+|+.+... .. .
T Consensus 25 ~~k~vlITGa-sggiG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 25 QGKVAFITGG-GTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4577887775 566777788877654 578999999988776655555433 4445778888765421 00 1
Q ss_pred CCCccEEEECCCC
Q 025180 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-+++|++|.|.-.
T Consensus 102 ~g~id~li~~Ag~ 114 (302)
T 1w6u_A 102 AGHPNIVINNAAG 114 (302)
T ss_dssp TCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2578999998654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.81 E-value=4.5 Score=32.51 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++.++...+...+.+...+....++.+|+.+... .. .-
T Consensus 30 ~~k~vlITGa-sggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITGA-GHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 5678887775 566788888887754 5789999999887776666665555455778888765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 107 g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 107 GDVSILVNNAGVV 119 (272)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCcEEEECCCcC
Confidence 4799999987543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.53 E-value=11 Score=30.40 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=53.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEECC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~np 123 (256)
+|.=+| .|.++..++..+.+.+...+|+++|.+++.++.+++ .+.... ...|..+.. . ..|+|+..-
T Consensus 3 ~I~iIG--~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~~-~~~~~~~~~-----~~~aDvVilav 70 (281)
T 2g5c_A 3 NVLIVG--VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDE-GTTSIAKVE-----DFSPDFVMLSS 70 (281)
T ss_dssp EEEEES--CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSE-EESCGGGGG-----GTCCSEEEECS
T ss_pred EEEEEe--cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCccc-ccCCHHHHh-----cCCCCEEEEcC
Confidence 455566 455666666666543322379999999988766542 343211 122332221 3 679998854
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|- .....++..+...++++.+++.
T Consensus 71 p~------------------------~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 71 PV------------------------RTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp CH------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred CH------------------------HHHHHHHHHHHhhCCCCcEEEE
Confidence 41 1245667777778888876554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=84.49 E-value=8.1 Score=30.20 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=46.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
...+|+=+|+ |.++..+++.|.+. +. |+++|.+++.++.++ . ...++.+|..+.. ....-...|+|
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~-----~--~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGS--EV-FVLAEDENVRKKVLR-----S--GANFVHGDPTRVSDLEKANVRGARAV 75 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHH-----T--TCEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHh-----c--CCeEEEcCCCCHHHHHhcCcchhcEE
Confidence 3467877776 68888888887643 56 999999998776543 1 2378888876542 12123578999
Q ss_pred EECC
Q 025180 120 VVNP 123 (256)
Q Consensus 120 i~np 123 (256)
++..
T Consensus 76 i~~~ 79 (234)
T 2aef_A 76 IVDL 79 (234)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8853
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=84.44 E-value=6.1 Score=33.26 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEE-EEeCCHH---HHHHHHHHHHHcCCcceEEEcch--hhchhhhc
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYI-ATDINPY---AVEVTRKTLEAHNVHADLINTDI--ASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~-giD~~~~---~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~ 112 (256)
+++.+||=.|+ |.|..++.+++.+ ++.++ .++.++. ..+.++ ..|.+ .++..+- .+......
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~~~----~lGa~-~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAAL-----GLRTINVVRDRPDIQKLSDRLK----SLGAE-HVITEEELRRPEMKNFF 235 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEECCCSCHHHHHHHHH----HTTCS-EEEEHHHHHSGGGGGTT
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHc-----CCEEEEEecCccchHHHHHHHH----hcCCc-EEEecCcchHHHHHHHH
Confidence 57899999996 4566777777653 34554 4454432 233333 34543 2332210 01111111
Q ss_pred C--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 113 A--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 113 ~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
. ..+|+|+-.-. -.. ...+.++|+++|+++++
T Consensus 236 ~~~~~~Dvvid~~g---------------------------~~~-~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 236 KDMPQPRLALNCVG---------------------------GKS-STELLRQLARGGTMVTY 269 (357)
T ss_dssp SSSCCCSEEEESSC---------------------------HHH-HHHHHTTSCTTCEEEEC
T ss_pred hCCCCceEEEECCC---------------------------cHH-HHHHHHhhCCCCEEEEE
Confidence 1 14899987411 112 23567899999999885
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.38 E-value=6.6 Score=30.96 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=68.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh-------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------- 111 (256)
.+++||=.|++. .++.++++.+.++ ++.|+.+ .-+++..+...+.+...+....++..|+.+... ..
T Consensus 6 ~~k~vlITGas~-gIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 6 KGKVALVTGASR-GIGRAIAKRLAND--GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHT--TCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 467788777664 4677778877654 5678775 555666665555555555445677777655421 00
Q ss_pred -----cCCCccEEEECCCCCCCCCccccccc-chhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 112 -----LAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 112 -----~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..+++|++|.|.-+......+....+ ....+... ..-...+++.+.+.++++|+++++..
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~~~iv~isS 148 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN---AKAPFFIIQQALSRLRDNSRIINISS 148 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHH---THHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhh---chHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 01349999998765432221100000 00000000 00122345666777788898887653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.34 E-value=6.3 Score=31.88 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=55.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++-++...+.+.+.+...+....++.+|+.+... .. .-
T Consensus 43 ~~k~vlITGa-sggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 43 ENKVALVTGA-GRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp SSCEEEEEST-TSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 3577887775 467788888888754 5789999988877766655555444445777888765421 11 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 120 ~~id~li~~Ag~~ 132 (285)
T 2c07_A 120 KNVDILVNNAGIT 132 (285)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5789999986543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=84.23 E-value=5.1 Score=31.69 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.|.++ +++|++++.++...+...+.+...+....++.+|+.+... ... .
T Consensus 12 ~~k~vlItGa-sggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGG-AQNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4677887775 566777888877654 5789999999887766666665545455778888765421 111 1
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|.-.
T Consensus 89 ~~id~vi~~Ag~ 100 (260)
T 3awd_A 89 GRVDILVACAGI 100 (260)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.11 E-value=7.5 Score=31.22 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.+|.+++.++.+.+.+ +....++..|+.+... ... -
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (271)
T 3tzq_B 10 ENKVAIITGAC-GGIGLETSRVLARA--GARVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDTF 83 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788877765 55677777777654 578999999877665554433 4444777788765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|--..
T Consensus 84 g~id~lv~nAg~~ 96 (271)
T 3tzq_B 84 GRLDIVDNNAAHS 96 (271)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4799999987554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.01 E-value=14 Score=29.33 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hhc-----
Q 025180 42 HPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KRL----- 112 (256)
Q Consensus 42 ~~~~VLDlGc-G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~~----- 112 (256)
.+++||=.|+ |.| ++.++++.+.++ +++|+.++.++...+.+.+.+...+ ....++..|+.+... ...
T Consensus 21 ~~k~vlITGasg~G-IG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 21 KGKVVLVTAAAGTG-IGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTCEEEESSCSSSS-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCc-hHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 5678888876 444 455566666644 6789999999988877777665443 234788888765421 110
Q ss_pred -CCCccEEEECCCCCC
Q 025180 113 -AGLVDVMVVNPPYVP 127 (256)
Q Consensus 113 -~~~fD~Ii~npP~~~ 127 (256)
-+++|++|.|.-+..
T Consensus 98 ~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHSCCCEEEECCCCCC
T ss_pred HhCCCcEEEECCCcCC
Confidence 147899999876543
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=83.88 E-value=8.9 Score=31.05 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+.+..|+++|.+++.++.+.+ .+.. .....|..+.. ...|+|+..-
T Consensus 7 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~-~~~~~~~~~~~-----~~aDvVilav 74 (290)
T 3b1f_A 7 KTIYIAGLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIV-DEATADFKVFA-----ALADVIILAV 74 (290)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSC-SEEESCTTTTG-----GGCSEEEECS
T ss_pred ceEEEEeeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCc-ccccCCHHHhh-----cCCCEEEEcC
Confidence 467667755 4444456555443445689999999987765543 2321 11222332221 3579998854
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc-cccCeEEE
Q 025180 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL-LSKRGWLY 170 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-LkpgG~l~ 170 (256)
|- .....++..+... |+++.+++
T Consensus 75 p~------------------------~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 75 PI------------------------KKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp CH------------------------HHHHHHHHHHHTSCCCTTCEEE
T ss_pred CH------------------------HHHHHHHHHHHhcCCCCCCEEE
Confidence 41 1245677777777 88876555
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=83.67 E-value=6.6 Score=31.24 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh--hhcC----
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE--KRLA---- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~~---- 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|++++.+++..+.+.+.+... +....++..|+.+... ...+
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 6 QGKLAVVTAGS-SGLGFASALELARN--GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45778877754 66777788877654 578999999988776665555432 2234677788765421 1111
Q ss_pred --CCccEEEECCCCC
Q 025180 114 --GLVDVMVVNPPYV 126 (256)
Q Consensus 114 --~~fD~Ii~npP~~ 126 (256)
+ +|++|.|--..
T Consensus 83 ~~g-id~lv~~Ag~~ 96 (260)
T 2z1n_A 83 LGG-ADILVYSTGGP 96 (260)
T ss_dssp TTC-CSEEEECCCCC
T ss_pred hcC-CCEEEECCCCC
Confidence 4 99999987543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.37 E-value=4.5 Score=32.74 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|++ |.++.++++.+.++ +++|++++.+++..+.+.+.+...+....++..|+.+... ... -
T Consensus 23 ~~k~~lVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVS-SGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45778888855 55677778777654 6789999999988887777776555555788888765421 100 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|--..
T Consensus 100 g~id~lv~nAg~~ 112 (279)
T 3sju_A 100 GPIGILVNSAGRN 112 (279)
T ss_dssp CSCCEEEECCCCC
T ss_pred CCCcEEEECCCCC
Confidence 5799999987544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.03 E-value=16 Score=29.10 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=49.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
++||=.| + |.++..+++.|.++ +.+|++++-++...+.... ...+++.+|+.+.. -..+|+||..-
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~----~~~~d~vi~~a 71 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQ--GWRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS----LDGVTHLLIST 71 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGG--TCEEEEEESCGGGHHHHHH------TTEEEEESSSSCCC----CTTCCEEEECC
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHC--CCEEEEEEcChhhhhhHhh------CCCeEEEecccccc----cCCCCEEEECC
Confidence 6799999 4 99999999988765 5689999988765443322 12478888987742 35789999864
Q ss_pred C
Q 025180 124 P 124 (256)
Q Consensus 124 P 124 (256)
.
T Consensus 72 ~ 72 (286)
T 3ius_A 72 A 72 (286)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=83.01 E-value=5.3 Score=29.09 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc--hhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG--LEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~fD~ 118 (256)
.++.+|+=+|+ |.++..+++.+.+. +..|+++|.+++.++.++. .. ...++.+|..+. +....-..+|+
T Consensus 17 ~~~~~v~IiG~--G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~~--g~~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 17 QKSKYIVIFGC--GRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---EF--SGFTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp CCCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---TC--CSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred cCCCcEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---cC--CCcEEEecCCCHHHHHHcCcccCCE
Confidence 46788998876 67777777776543 4689999999876554321 11 224566665332 11111146899
Q ss_pred EEECCC
Q 025180 119 MVVNPP 124 (256)
Q Consensus 119 Ii~npP 124 (256)
|+..-|
T Consensus 88 Vi~~~~ 93 (155)
T 2g1u_A 88 VFAFTN 93 (155)
T ss_dssp EEECSS
T ss_pred EEEEeC
Confidence 988543
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=82.99 E-value=5 Score=32.36 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++.+++..+...+.+...+....++..|+.+... ... -
T Consensus 27 ~~k~~lVTGa-s~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 27 DKQVAIVTGA-SRGIGRAIALELARR--GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 4677777774 556677778877654 6799999999988887777777666666777888765421 111 1
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|--+.
T Consensus 104 g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 104 GALNVLVNNAGIT 116 (270)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999987543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.95 E-value=16 Score=29.07 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh--hhc------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|++ |.++.++++.+.++ +++|+.++.+++..+.+.+.+.. .+....++..|+.+... ...
T Consensus 19 ~~k~vlVTGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGAT-KGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56788877765 45677777777654 67899999998888777666654 45555788888866531 110
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-..
T Consensus 96 ~g~id~lv~nAg~~ 109 (266)
T 4egf_A 96 FGGLDVLVNNAGIS 109 (266)
T ss_dssp HTSCSEEEEECCCC
T ss_pred cCCCCEEEECCCcC
Confidence 15799999986544
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=82.91 E-value=11 Score=32.31 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=49.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH---HHHHHHHHHHHc---------CCcceEEEcchhhch-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY---AVEVTRKTLEAH---------NVHADLINTDIASGL- 108 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~---~i~~a~~~~~~~---------~~~~~~~~~d~~~~~- 108 (256)
++++||=.| |+|.++..++..|.+ .+++|++++-++. ..+...+.+... +....++.+|+.+..
T Consensus 68 ~~~~vlVTG-atG~iG~~l~~~L~~--~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 68 PLGNTLLTG-ATGFLGAYLIEALQG--YSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCEEEEEEC-TTSHHHHHHHHHHTT--TEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCEEEEec-CCcHHHHHHHHHHHc--CCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 456787777 568888888888853 3678999987765 444444333221 223478888987631
Q ss_pred hhhcCCCccEEEECCCCC
Q 025180 109 EKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~ 126 (256)
.. ....+|+|+-+-.+.
T Consensus 145 l~-~~~~~d~Vih~A~~~ 161 (427)
T 4f6c_A 145 VV-LPENMDTIIHAGART 161 (427)
T ss_dssp CC-CSSCCSEEEECCCCC
T ss_pred CC-CcCCCCEEEECCccc
Confidence 11 336799999875443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=2.6 Score=45.17 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhc-CC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~-~~ 114 (256)
+++.+||=.|. |.|..++.+++. .+++|++++.+++..+.+++.....+.. .++.. ++.+...... ..
T Consensus 1666 ~~Ge~VLI~gaaGgVG~aAiqlAk~-----~Ga~Viat~~s~~k~~~l~~~~~~lga~-~v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A 1666 QPGESVLIHSGSGGVGQAAIAIALS-----RGCRVFTTVGSAEKRAYLQARFPQLDET-CFANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHHHCTTCCST-TEEESSSSHHHHHHHHTTTSC
T ss_pred CCCCEEEEEeCChHHHHHHHHHHHH-----cCCEEEEEeCChhhhHHHHhhcCCCCce-EEecCCCHHHHHHHHHhcCCC
Confidence 57889998864 456666666665 3568999999998887776643212222 22222 2222222221 23
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+|+|+-.. -...+....++|+++|+++.+
T Consensus 1740 GvDvVld~~----------------------------g~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1740 GVDLVLNSL----------------------------AEEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp CEEEEEECC----------------------------CHHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECC----------------------------CchHHHHHHHhcCCCcEEEEe
Confidence 599998631 134578888999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 256 | ||||
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 4e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 8e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-04 | |
| d2b3ta1 | 274 | c.66.1.30 (A:2-275) N5-glutamine methyltransferase | 0.002 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.003 |
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 4e-09
Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 27/179 (15%)
Query: 14 HPEVYEPCDDSFALVDALLAD---RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG 70
E P + D + + +++G G+ + +LG + G
Sbjct: 30 PLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGAS----CIYPLLGATLNG 85
Query: 71 VQYIATDINPYAVEVTRKTLEAHNVHADLI------NTDIASGLEKRLAGLVDVMVVNPP 124
++AT+++ +K +E +N+ + T + L++ + D + NPP
Sbjct: 86 WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPP 145
Query: 125 YVPTPEDEVGREGIASAWA--------------GGENGRAVIDKILPSADKLLSKRGWL 169
+ + G + +I+ + +L + W
Sbjct: 146 FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY 204
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 8e-05
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------- 97
+E G GSG + L+ +G + I+ ++ ++ +K +
Sbjct: 102 VLEAGSGSGGMSLFLSKAVG---SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158
Query: 98 ----DLINTDIASGLEKRLAGLVDVMVVNPP 124
D I+ DI+ E + D + ++
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDML 189
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96
+EVG GSG + + + L + + ++ L
Sbjct: 89 ILEVGVGSGNMSSYILYALN---GKGTLTVVERDEDNLKKAMDNLSEFYDI 136
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (84), Expect = 0.002
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 36 INLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95
+ + P +++G G+G + +LA P + IA D P AV + ++ + +
Sbjct: 102 LARLPEQPCRILDLGTGTGAIALALASER----PDCEIIAVDRMPDAVSLAQRNAQHLAI 157
Query: 96 H-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRA 150
++ +D S L ++V NPPY+ + R +A ++G A
Sbjct: 158 KNIHILQSDWFSALAG---QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMA 214
Query: 151 VIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210
I I+ + L G+L L E G+ V+++ H ++
Sbjct: 215 DIVHIIEQSRNALVSGGFLLL----------------EHGWQQGEAVRQAFILAGYHDVE 258
Query: 211 FWRDF 215
RD+
Sbjct: 259 TCRDY 263
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.1 bits (83), Expect = 0.003
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93
+E G GSG + SL +G P Q I+ + E R+ +
Sbjct: 100 VLEAGAGSGALTLSLLRAVG---PAGQVISYEQRADHAEHARRNVSGC 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.97 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.95 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.91 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.86 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.86 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.78 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.76 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.75 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.75 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.75 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.74 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.74 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.73 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.72 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.72 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.72 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.72 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.72 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.71 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.71 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.7 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.7 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.69 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.68 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.67 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.67 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.67 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.65 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.65 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.65 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.65 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.63 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.63 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.63 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.61 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.6 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.6 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.58 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.58 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.57 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.56 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.51 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.49 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.47 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.46 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.45 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.44 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.44 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.41 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.4 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.39 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.38 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.34 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.33 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.23 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.18 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 99.13 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.12 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.06 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.05 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.02 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.0 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.99 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.99 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.96 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.95 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.94 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.94 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.92 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.89 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.83 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.75 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.57 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.35 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.31 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 98.02 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.69 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.6 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.56 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.55 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.51 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.48 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.47 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.46 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.46 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.28 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.23 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.22 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.07 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.06 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.06 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.03 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.77 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.71 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.57 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.4 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.3 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.82 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.76 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.66 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.65 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.62 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.56 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.42 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.42 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.29 | |
| d2dpma_ | 275 | DNA methylase DpnM {Streptococcus pneumoniae [TaxI | 95.22 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.12 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.07 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.07 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.78 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.62 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.45 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.23 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.13 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.08 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.06 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.79 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.67 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.51 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.17 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.16 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 92.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.99 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.63 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 91.41 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.17 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.09 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.06 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.06 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.78 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.72 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.71 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.2 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.08 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.64 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 88.77 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.83 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 87.63 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.52 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.55 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.16 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 86.04 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 85.43 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.33 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 85.23 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 85.19 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.15 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.3 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 84.14 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.93 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 82.68 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 82.51 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.41 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.28 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.46 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 81.23 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.92 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.9e-31 Score=218.98 Aligned_cols=187 Identities=22% Similarity=0.323 Sum_probs=163.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.|+||+||++|+.++++++..+. ..+.+|||+|||+|++++.++.. .|++.|+|+|+|+.+++.|++|
T Consensus 80 ~~~v~~~VlIPRpeTE~lv~~~l~~~~----~~~~~vlDlGtGSG~I~i~la~~----~p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 80 PLFVSPATLIPRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASE----RPDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHH----CTTSEEEEECSSHHHHHHHHHH
T ss_pred EEEEeccccccccchhhhhhhHhhhhc----ccccceeeeehhhhHHHHHHHhh----CCcceeeeccchhHHHhHHHHH
Confidence 378999999999999999999888764 46788999999999999998887 7899999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++++. +++++|+.+... ..+||+|++||||.+..+ .++...++..++.+|.+|...+..++..+.++|+
T Consensus 152 a~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~ 228 (274)
T d2b3ta1 152 AQHLAIKNIHILQSDWFSALA---GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 228 (274)
T ss_dssp HHHHTCCSEEEECCSTTGGGT---TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred HHHhCcccceeeecccccccC---CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence 99999864 999999887643 368999999999998775 3456788899999999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
|||.+++ ..+..+...+.+.+.+.||..+.+.....+.+++.+
T Consensus 229 ~~G~l~l-Eig~~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~ 271 (274)
T d2b3ta1 229 SGGFLLL-EHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTL 271 (274)
T ss_dssp EEEEEEE-ECCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEE
T ss_pred CCCEEEE-EECchHHHHHHHHHHHCCCCeEEEEECCCCCceEEE
Confidence 9999999 456777889999999999987778888777777543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.7e-27 Score=193.84 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=148.5
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.+++|+||++|+.+++++++.+.. .+..+|+|+|||+|++++.+++ .|+++|+++|+|+++++.|++|
T Consensus 81 ~f~v~~~vlIPRpeTE~lv~~~~~~~~~---~~~~~vld~g~GsG~i~~~la~-----~~~~~v~a~Dis~~Al~~A~~N 152 (271)
T d1nv8a_ 81 SFLVEEGVFVPRPETEELVELALELIRK---YGIKTVADIGTGSGAIGVSVAK-----FSDAIVFATDVSSKAVEIARKN 152 (271)
T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHH-----HSSCEEEEEESCHHHHHHHHHH
T ss_pred EEEEecCccCchhhhhhhhhhhhhhhcc---ccccEEEEeeeeeehhhhhhhh-----cccceeeechhhhhHHHHHHHH
Confidence 4779999999999999999999887643 3567999999999999988775 3788999999999999999999
Q ss_pred HHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 90 LEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 90 ~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+..+++.. .++.+|+.+.... ..++||+|++||||...... .....+|..++.+|.+|+..+..++. ++|+|
T Consensus 153 a~~~~~~~~~~i~~~~~~~~~~~-~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~---~~L~~ 228 (271)
T d1nv8a_ 153 AERHGVSDRFFVRKGEFLEPFKE-KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG---RYDTS 228 (271)
T ss_dssp HHHTTCTTSEEEEESSTTGGGGG-GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH---HCCCT
T ss_pred HHHcCCCceeEEeeccccccccc-ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHH---HhcCC
Confidence 99999866 6788888876543 24789999999999975532 33458899999999999988888764 68999
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEE
Q 025180 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
||++++ ..+..+.+.+.+.+.+.|| +....+.+++.++
T Consensus 229 ~G~l~~-Eig~~Q~~~v~~l~~~~g~-----~kDl~g~~R~~~~ 266 (271)
T d1nv8a_ 229 GKIVLM-EIGEDQVEELKKIVSDTVF-----LKDSAGKYRFLLL 266 (271)
T ss_dssp TCEEEE-ECCTTCHHHHTTTSTTCEE-----EECTTSSEEEEEE
T ss_pred CCEEEE-EECHHHHHHHHHHHHhCCE-----EeccCCCcEEEEE
Confidence 999888 5567888888888877665 4555666665544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.7e-23 Score=168.67 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=129.1
Q ss_pred ccceeeeccCCccccCCchHHHHHHHHHhh-ccc--ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHH
Q 025180 6 AQIRLVSSHPEVYEPCDDSFALVDALLADR-INL--VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA 82 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~-~~~--~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~ 82 (256)
+++ .+.+.+++++||++++..+...+..+ ... ...+..+|||+|||+|++++.++.. .|+++++|+|+++++
T Consensus 23 ~gl-~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~----~~~~~~~~~Di~~~a 97 (250)
T d2h00a1 23 FGL-SIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGAT----LNGWYFLATEVDDMC 97 (250)
T ss_dssp HCC-CCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHH----HHCCEEEEEESCHHH
T ss_pred cCc-eEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHh----CCCccccceecCHHH
Confidence 455 48899999999999777665544443 221 1235579999999999999888887 578999999999999
Q ss_pred HHHHHHHHHHcCCcc--eEEEcchhhch----hhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCCc-
Q 025180 83 VEVTRKTLEAHNVHA--DLINTDIASGL----EKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGENG- 148 (256)
Q Consensus 83 i~~a~~~~~~~~~~~--~~~~~d~~~~~----~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~~- 148 (256)
++.|++|++.|++.. .+.+.+..+.. ....+++||+|+|||||+...+... ....+.....++...
T Consensus 98 l~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el 177 (250)
T d2h00a1 98 FNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177 (250)
T ss_dssp HHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred HHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccc
Confidence 999999999999876 55555443322 2223568999999999997654321 122334444443322
Q ss_pred ------HHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 149 ------RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 149 ------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
..++..++++...+++..|++.+.........++.+.+++.|+....+..
T Consensus 178 ~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie 233 (250)
T d2h00a1 178 MAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTE 233 (250)
T ss_dssp HHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEE
Confidence 23678889999999999999876555556678899999999987544443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=5.3e-21 Score=150.83 Aligned_cols=143 Identities=20% Similarity=0.377 Sum_probs=107.8
Q ss_pred eeccCCccccCC-c--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPEVYEPCD-D--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~-~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...+++|.+.. | ++++++ .+. ..++++|||+|||+|.+++.++.. . .+|+++|+|+.+++.|+
T Consensus 25 ~~t~~gvF~~~~~d~~t~lLi~----~l~---~~~~~~VLDiGcG~G~~~~~la~~----~--~~v~~iD~s~~~i~~a~ 91 (194)
T d1dusa_ 25 FKTDSGVFSYGKVDKGTKILVE----NVV---VDKDDDILDLGCGYGVIGIALADE----V--KSTTMADINRRAIKLAK 91 (194)
T ss_dssp EEEETTSTTTTSCCHHHHHHHH----HCC---CCTTCEEEEETCTTSHHHHHHGGG----S--SEEEEEESCHHHHHHHH
T ss_pred EEcCCCccCCCCcCHHHHHHHH----hCC---cCCCCeEEEEeecCChhHHHHHhh----c--cccceeeeccccchhHH
Confidence 556788876643 2 444444 332 357899999999999998877664 3 38999999999999999
Q ss_pred HHHHHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 88 KTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 88 ~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+|+..+++.. ++..+|+.+... +++||+|++||||+.. .+....+++.+.++||
T Consensus 92 ~n~~~~~l~~~~i~~~~~d~~~~~~---~~~fD~Ii~~~p~~~~--------------------~~~~~~~l~~~~~~Lk 148 (194)
T d1dusa_ 92 ENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIITNPPIRAG--------------------KEVLHRIIEEGKELLK 148 (194)
T ss_dssp HHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEECCCSTTC--------------------HHHHHHHHHHHHHHEE
T ss_pred HHHHHhCCccceEEEEEcchhhhhc---cCCceEEEEcccEEec--------------------chhhhhHHHHHHHhcC
Confidence 9999998754 788899876432 4789999999998632 2335788999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 165 KRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|||+++++.........+...+.+.
T Consensus 149 pgG~l~i~~~~~~~~~~~~~~l~~~ 173 (194)
T d1dusa_ 149 DNGEIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp EEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred cCcEEEEEEeCcCCHHHHHHHHHHh
Confidence 9999988766554444555555554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=9e-21 Score=155.01 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.++++++.... +++++|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|+..++++.+++++|
T Consensus 107 T~l~l~~l~~~~-----~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d 175 (254)
T d2nxca1 107 TRLALKALARHL-----RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHC-----CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC
T ss_pred hhHHHHHHHhhc-----CccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcCCceeEEecc
Confidence 788888887764 58899999999999999877764 4589999999999999999999999988999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+..+ .++||+|++|..+ ..+..++..+.++|||||+++++..-.....++.
T Consensus 176 ~~~~~~---~~~fD~V~ani~~------------------------~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~ 228 (254)
T d2nxca1 176 LEAALP---FGPFDLLVANLYA------------------------ELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228 (254)
T ss_dssp HHHHGG---GCCEEEEEEECCH------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred cccccc---ccccchhhhcccc------------------------ccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHH
Confidence 876543 3789999998432 2367888999999999999998655455677889
Q ss_pred HHHHHcCCcEEEEEe
Q 025180 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
+.+.+.||.......
T Consensus 229 ~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 229 EAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998755443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.82 E-value=1.4e-19 Score=141.59 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=110.4
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-c-
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-A- 97 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~- 97 (256)
|.+..+.+-..++..+. ..++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++|++.+++. .
T Consensus 14 ~~~t~~eir~~il~~l~---~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~n~~~~gl~~~v 84 (186)
T d1l3ia_ 14 PGPTAMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRHGLGDNV 84 (186)
T ss_dssp CCCCCHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCTTE
T ss_pred CCCChHHHHHHHHHhcC---CCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHHHHHHcCCCcce
Confidence 34445666666666654 368999999999999999887654 348999999999999999999999985 3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|+.+...+ ...||+|+++.+..+ ...+++.+.+.|||||++++......
T Consensus 85 ~~~~gda~~~~~~--~~~~D~v~~~~~~~~------------------------~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 85 TLMEGDAPEALCK--IPDIDIAVVGGSGGE------------------------LQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp EEEESCHHHHHTT--SCCEEEEEESCCTTC------------------------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred EEEECchhhcccc--cCCcCEEEEeCcccc------------------------chHHHHHHHHHhCcCCEEEEEeeccc
Confidence 8999998877543 478999999866421 46789999999999999998765555
Q ss_pred CHHHHHHHHHHcCCcEE
Q 025180 178 DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~ 194 (256)
....+.+.+.+.++...
T Consensus 139 ~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 139 TKFEAMECLRDLGFDVN 155 (186)
T ss_dssp HHHHHHHHHHHTTCCCE
T ss_pred cHHHHHHHHHHcCCCeE
Confidence 55677788888887644
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=8.2e-19 Score=141.34 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.+. +++++|+.+. ++.+++||+|
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l--~~~~~~fD~v 85 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIV 85 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhcccccccccccccccccccc--cccccccccc
Confidence 67899999999999988776654 3589999999999999999999888765 8999998875 3456899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.-.+++.++ ...++.++.++|||||++++...
T Consensus 86 ~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 86 TCRIAAHHFPN---------------------PASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccCC---------------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 99766554433 56889999999999999998654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=7e-19 Score=142.34 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=88.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|||+|||+|.++..++.. + .+|+|+|+|+.|++.|++++..++.++ .++++|+.+. ++.+++||+|
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~----~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v 86 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPY----V--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--PFPDDSFDII 86 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG----S--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--CSCTTCEEEE
T ss_pred CCCCEEEEeCCcCcHHHHHHHHh----C--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc--ccccccccee
Confidence 68999999999999998777664 2 489999999999999999999888765 9999999875 4457899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+|.-.+.+.++ ...+++++.++|||||+++++...
T Consensus 87 ~~~~~l~~~~d---------------------~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 87 TCRYAAHHFSD---------------------VRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp EEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeeceeecccC---------------------HHHHHHHHHHeeCCCcEEEEEEcC
Confidence 99766544332 578899999999999999986543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.9e-18 Score=133.12 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=96.8
Q ss_pred CCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 15 PEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
|...+|+++ .+.+++++..++ .++.+|||+|||+|.++++++.. ++.++++|+|+.+++.+++|++.
T Consensus 17 ~~~~Rpt~~~v~e~lf~~l~~~~-----~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~ 85 (171)
T d1ws6a1 17 PASARPSPVRLRKALFDYLRLRY-----PRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRR 85 (171)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHC-----TTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHhhccc-----cCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHh
Confidence 566788887 567777777664 36889999999999999887765 46899999999999999999999
Q ss_pred cCCcceEEEcchhhchh--hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 93 HNVHADLINTDIASGLE--KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+++..+++..+...... .....+||+|++||||...-. .....++. ..+|+|||+++
T Consensus 86 ~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~-------------------~~l~~l~~--~~ll~~~g~iv 144 (171)
T d1ws6a1 86 TGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLA-------------------ALFGELLA--SGLVEAGGLYV 144 (171)
T ss_dssp HTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTT-------------------HHHHHHHH--HTCEEEEEEEE
T ss_pred hccccceeeeehhcccccccccCCccceeEEccccccCHH-------------------HHHHHHHH--cCCcCCCeEEE
Confidence 99887777777654432 234578999999999953111 12333333 35899999998
Q ss_pred EEEe
Q 025180 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+.++
T Consensus 145 ie~~ 148 (171)
T d1ws6a1 145 LQHP 148 (171)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.77 E-value=1.2e-17 Score=134.16 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=87.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|..+..+++.+. .|+++|+|+|+|+.|++.|++++...+... .+..+|+.+. ....+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~--~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~----~~~~~d~ 111 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----EIKNASM 111 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCC--CSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC----CCCSEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhc--CCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc----cccccee
Confidence 5789999999999999988887643 468899999999999999999988766554 6677777654 2368899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++--+++.+..+ ...+++++++.|||||.+++.+.
T Consensus 112 i~~~~~l~~~~~~d-------------------~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 112 VILNFTLQFLPPED-------------------RIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EEEESCGGGSCGGG-------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeeeccccChhh-------------------HHHHHHHHHHhCCCCceeecccc
Confidence 99975554433222 57899999999999999999754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=4.9e-18 Score=138.28 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
+...++.+.+.+. -.++.+|||+|||+|.++..+++. . ++.|+|+|+|+.+++.|+++....++.. +++.
T Consensus 18 ~~~~~~~l~~~~~---l~pg~~VLDiGCG~G~~~~~la~~----~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 18 TEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARD----H-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89 (245)
T ss_dssp CHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHH----T-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHh----c-CCEEEEEecccchhhHHHHHHHHhhccccchhhh
Confidence 4555666666654 258899999999999988877765 3 4799999999999999999999998864 8999
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----
Q 025180 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----- 176 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----- 176 (256)
+|+.+.. .+++||+|++.-.+++.++ ...++.++.++|||||++++..+..
T Consensus 90 ~d~~~~~---~~~~fD~v~~~~~~~~~~d---------------------~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~ 145 (245)
T d1nkva_ 90 NDAAGYV---ANEKCDVAACVGATWIAGG---------------------FAGAEELLAQSLKPGGIMLIGEPYWRQLPA 145 (245)
T ss_dssp SCCTTCC---CSSCEEEEEEESCGGGTSS---------------------SHHHHHHHTTSEEEEEEEEEEEEEETTCCS
T ss_pred hHHhhcc---ccCceeEEEEEehhhccCC---------------------HHHHHHHHHHHcCcCcEEEEEeccccCCCC
Confidence 9998863 3578999999654443332 4688999999999999999966421
Q ss_pred ----------------CCHHHHHHHHHHcCCcEE
Q 025180 177 ----------------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 177 ----------------~~~~~~~~~~~~~g~~~~ 194 (256)
.........+.+.||...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 146 TEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp SHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred hHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 123356666777777643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.76 E-value=1.1e-17 Score=138.96 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=88.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. .+++|+|+|+++.+++.|+++....++.. +++++|+.+. ++.+++||+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l--~~~~~sfD~ 138 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRK-----FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI--PCEDNSYDF 138 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHH-----HCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC--SSCTTCEEE
T ss_pred CCCCEEEEeCCCCcHHHhhhhcc-----CCcEEEEEeccchhhhhhhcccccccccccccccccccccc--cccccccch
Confidence 57899999999999998888775 25689999999999999999999888764 8999999886 445689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...++.++.++|||||++++..+
T Consensus 139 V~~~~~l~h~~d---------------------~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 139 IWSQDAFLHSPD---------------------KLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEESCGGGCSC---------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccchhhhccC---------------------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 999766544433 46889999999999999998654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=3.6e-18 Score=136.71 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=86.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.++..+++. +++|+|+|+|++|++.|+++....+....++.+|+.+. ++.+++||+|+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l--~~~~~~fD~I~ 107 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL--SFEDKTFDYVI 107 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhccccccccccccccccc--cccCcCceEEE
Confidence 36789999999999998888764 56899999999999999999887776678888998875 34468999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|.-.+.+.+. .....+++.+.++|||||++++...
T Consensus 108 ~~~~l~~~~~-------------------~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 108 FIDSIVHFEP-------------------LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EESCGGGCCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecchhhCCh-------------------hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9654443221 1256889999999999999988654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=3.2e-18 Score=139.16 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-Ccc-eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.++..+++.+ .+++.|+++|.++++++.|++|+..++ ..+ ++..+|+.+... ++.||.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v---~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~---~~~fD~ 157 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYAL---NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---DQMYDA 157 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---SCCEEE
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc---cceeee
Confidence 689999999999999999999876 366799999999999999999998764 333 899999887643 478999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+++.|- ...++..+.+.|||||++++..+...+...+...+++.||....
T Consensus 158 V~ld~p~--------------------------p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 158 VIADIPD--------------------------PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEECCSC--------------------------GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred eeecCCc--------------------------hHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence 9998762 23568999999999999999888766667777888888887544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.8e-18 Score=136.31 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++.. .+ .+|+|+|+|++|++.|++++...+... +++++|+.+.. +.+++||+|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~----~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--~~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLP----LF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTT----TC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHh----cC-CEEEEeecCHHHhhccccccccccccccccccccccccc--ccccccccc
Confidence 46789999999999976554332 33 489999999999999999988776655 89999998863 346899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------CHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------DPSQICLQ 185 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~~~ 185 (256)
++...+++.++++ ...++..+.++|||||.+++...... ..+++.+.
T Consensus 132 ~~~~~l~h~~~~~-------------------~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 192 (222)
T d2ex4a1 132 WIQWVIGHLTDQH-------------------LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRI 192 (222)
T ss_dssp EEESCGGGSCHHH-------------------HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHH
T ss_pred ccccccccchhhh-------------------hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHH
Confidence 9976665544321 46789999999999999999754222 35678899
Q ss_pred HHHcCCcEEEEEecC
Q 025180 186 MMEKGYAARIVVQRS 200 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~ 200 (256)
+.+.||+.+......
T Consensus 193 ~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 193 ICSAGLSLLAEERQE 207 (222)
T ss_dssp HHHTTCCEEEEEECC
T ss_pred HHHcCCEEEEEEEeC
Confidence 999999887665443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=1.8e-17 Score=130.93 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++..|||||||+|..++.+|+. +|+..++|+|+++.++..|.+++...++++ .++++|+......+.++++|.|
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~----~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEEecCcHHHHHHHHh----CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcc
Confidence 35568999999999999998888 899999999999999999999999999886 9999999876655567899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
+++.|-..... +....++ +...++..++++|||||++++.+......+.....+.+.++....
T Consensus 104 ~i~fp~P~~k~-----~h~k~Rl--------~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 104 YLNFSDPWPKK-----RHEKRRL--------TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp EEESCCCCCSG-----GGGGGST--------TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccccccccchh-----hhcchhh--------hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCcccc
Confidence 88654221111 1111111 136889999999999999999765444455667777777765433
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.6e-17 Score=140.10 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=106.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhh--cCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKR--LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD 117 (256)
.++++|||+|||+|.++++++.. +..|+++|+|+.+++.|++|+..|++.. +++++|+.+..... ..++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 36899999999999999887753 3589999999999999999999999875 89999998875432 357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HH----HHHHHHHHcCCc
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PS----QICLQMMEKGYA 192 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~----~~~~~~~~~g~~ 192 (256)
+|++|||.+........ .....+..++..+.++|+|||++++++++... .+ .+.+.+...+..
T Consensus 218 ~Vi~DpP~~~~~~~~~~------------~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVE------------RAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL 285 (318)
T ss_dssp EEEECCCCSCCSTTSHH------------HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCccccchHHHH------------HHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence 99999998765443210 11234678899999999999999998876432 22 334445556666
Q ss_pred EEEEEecC
Q 025180 193 ARIVVQRS 200 (256)
Q Consensus 193 ~~~~~~~~ 200 (256)
...+....
T Consensus 286 ~~~~~~~~ 293 (318)
T d1wxxa2 286 LRVVEKRG 293 (318)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 65555443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=9.5e-18 Score=136.65 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh
Q 025180 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE 109 (256)
Q Consensus 30 ~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~ 109 (256)
.+...+......++++|||+|||+|..++.+++. ++.|+|+|+|++|++.|++++...+.+..++++|+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccccccccccccccccccchheehhhhhccc
Confidence 3333333333467789999999999998887765 4589999999999999999999888888999999988632
Q ss_pred hhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 110 KRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 110 ~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++||+|+|.. .+.+.+ ......+|+++.++|||||++++..+.
T Consensus 103 ---~~~fD~I~~~~~~~~~~~-------------------~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 103 ---KNEFDAVTMFFSTIMYFD-------------------EEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp ---CSCEEEEEECSSGGGGSC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---ccccchHhhhhhhhhcCC-------------------hHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 36899999842 211111 122568899999999999999986543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=2.2e-17 Score=140.08 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=119.3
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc-CCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE-VPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~-~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+|+|++.+.++++.+...+. .+++.+|||+|||+|.+++++...+... .....++|+|+++.+++.|+.++..++.
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~---~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~ 171 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQ---KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ 171 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHT---TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred EECcHHHHHHHHHHHHHHhC---CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh
Confidence 68898888887776655543 2567899999999999999888776433 3456899999999999999999998888
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.....++|..... ...+||+|++||||......+...........+ .......+++.+.++|+|||+++++.+.
T Consensus 172 ~~~~~~~d~~~~~---~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~---~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 172 KMTLLHQDGLANL---LVDPVDVVISDLPVGYYPDDENAKTFELCREEG---HSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCEEEESCTTSCC---CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSS---CEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred hhhhhcccccccc---ccccccccccCCCCCCCccchhhhhcchhcccC---cchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 7788888866543 246899999999997554432211111111111 1123456899999999999999998874
Q ss_pred C----CCHHHHHHHHHHcC
Q 025180 176 A----NDPSQICLQMMEKG 190 (256)
Q Consensus 176 ~----~~~~~~~~~~~~~g 190 (256)
. .....+++.+.+.+
T Consensus 246 ~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 246 AMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp GGGGSTTHHHHHHHHHHHE
T ss_pred ccccCchhHHHHHHHHhCC
Confidence 3 34456777777765
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.73 E-value=3.4e-17 Score=129.37 Aligned_cols=163 Identities=15% Similarity=0.094 Sum_probs=116.1
Q ss_pred eccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 12 SSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 12 ~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
..+|.++.|.+... ...| .+.+ ......|||||||+|.+++.+|+. +|+..++|+|+++.++..|.+++.
T Consensus 7 ~~~p~~~~~~p~~~-~~~w-~~~f----~~~~plvLdIGcG~G~~~~~lA~~----~p~~~~iGid~~~~~v~~a~~~~~ 76 (204)
T d1yzha1 7 EANPQYVVLNPLEA-KAKW-RDLF----GNDNPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALDKVL 76 (204)
T ss_dssp HTCTTTEECCGGGT-TTTH-HHHH----TSCCCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHH
T ss_pred HhCcceEecChHHh-hccH-HHHc----CCCCCeEEEEeccCCHHHHHHHHH----CCCCceEEEeccHHHHHHHHHhhh
Confidence 35677777776521 1112 1222 235678999999999999999988 899999999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
..++++ .++.+|+......+.+.++|.|+++.|--... .+....++ +...+++.+.++|||||.++
T Consensus 77 ~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K-----~~h~krRl--------~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 77 EVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPK-----KRHEKRRL--------TYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp HHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCS-----GGGGGGST--------TSHHHHHHHHHHSCTTCEEE
T ss_pred hhccccceeeecCHHHHhhhccCCceehhcccccccccc-----hhhhhhhh--------hHHHHHHHHHHhCCCCcEEE
Confidence 999886 99999988766555678999999876531111 11111122 23688999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025180 171 LVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
+.+......++....+...++.....+
T Consensus 144 i~TD~~~Y~~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 144 FKTDNRGLFEYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp EEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEECCccHHHHHHHHHHHCCccccccc
Confidence 976544444555666666676554444
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=3.1e-17 Score=123.90 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+++|||+|||||.++++++.. +. .+|+++|.++.+++.+++|+..+++.. +++++|+...+. ...++||+|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r----ga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~-~~~~~fDiI 87 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR----GM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID-CLTGRFDLV 87 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT----TC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-HBCSCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh----Cc-ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc-cccccccee
Confidence 6899999999999999987765 33 389999999999999999999998765 899999988753 346789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~ 174 (256)
++||||. .......+..+ .++|+|+|.+++.+.
T Consensus 88 f~DPPy~----------------------~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 88 FLDPPYA----------------------KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp EECCSSH----------------------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Eechhhc----------------------cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 9999984 12234555544 357999999998543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=2.4e-17 Score=129.83 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+++|||+|||+|..++.+++. +++|+|+|+|+.+++.++++....+++. .+...|+.+... +++||+|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~I~ 100 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF---DGEYDFIL 100 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC---CCCEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc---cccccEEE
Confidence 4569999999999998888775 4689999999999999999999888876 888889877643 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+++.+..+ ...++..+.++|+|||+++++..
T Consensus 101 ~~~~~~~~~~~~-------------------~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 101 STVVMMFLEAQT-------------------IPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EESCGGGSCTTH-------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EeeeeecCCHHH-------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 988877655433 67899999999999999998764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=8e-17 Score=132.22 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=104.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+|||+|||+|.++..++..+ .|+++|+++|+++++++.|++|+...++.. .+...|+... +....||.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~---~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~---~~~~~~D~ 175 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDA 175 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc---ccccceee
Confidence 689999999999999999998875 367899999999999999999999998754 6777776543 33468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|+.+.|= ...+++.+.++|||||++++..+...+...+...+++.||....+..
T Consensus 176 V~~d~p~--------------------------p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 176 LFLDVPD--------------------------PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp EEECCSC--------------------------GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred eEecCCC--------------------------HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEE
Confidence 9997651 24678999999999999999888777777888889999987666553
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=2.8e-16 Score=126.32 Aligned_cols=170 Identities=13% Similarity=0.075 Sum_probs=116.1
Q ss_pred cCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025180 14 HPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 14 ~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
....|+-+.. ...|+..+..-+..++-+++.+|||+|||+|..+..++.. .|+..|+|+|+|+.|++.++++...
T Consensus 45 ~~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~----~~~g~V~aVDiS~~~i~~a~~~a~~ 120 (230)
T d1g8sa_ 45 GDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADI----ADKGIVYAIEYAPRIMRELLDACAE 120 (230)
T ss_dssp TTEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHH----TTTSEEEEEESCHHHHHHHHHHTTT
T ss_pred CCceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHh----CCCCEEEEEeCcHHHHHHHHHHHhh
Confidence 3344555555 6688888888777777789999999999999999888887 6778999999999999999887654
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+ ....+.+|...... ..+..+|++++..-+... .....++.++.+.|||||+++++
T Consensus 121 ~~-ni~~i~~d~~~~~~-~~~~~~~v~~i~~~~~~~---------------------~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 121 RE-NIIPILGDANKPQE-YANIVEKVDVIYEDVAQP---------------------NQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CT-TEEEEECCTTCGGG-GTTTCCCEEEEEECCCST---------------------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred hc-ccceEEEeeccCcc-cccccceeEEeeccccch---------------------HHHHHHHHHHHHhcccCceEEEE
Confidence 33 22667777766543 234455554442111111 12567899999999999999986
Q ss_pred EeCCC-----C----HHHHHHHHHHcCCcEEEEEec-CCCCccEEEEE
Q 025180 173 TLTAN-----D----PSQICLQMMEKGYAARIVVQR-STEEENLHIIK 210 (256)
Q Consensus 173 ~~~~~-----~----~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~ 210 (256)
..... . .++..+.+++.||+......- .....+..++-
T Consensus 178 ~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg 225 (230)
T d1g8sa_ 178 IKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp EEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEE
T ss_pred eeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEE
Confidence 53221 1 235667788889987665432 22334544443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.72 E-value=4.4e-17 Score=133.30 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=103.1
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCcc
Q 025180 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
++..++.+|||+|||+|.++..++.. +.+ .|+++|+++.+++.|+++..... ..+++++|+.+.. +.+++||
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~----~~~-~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~--~~~~~fD 160 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTK----LYA-TTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETAT--LPPNTYD 160 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHH----HCS-EEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCC--CCSSCEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhh----cCc-eEEEEcCCHHHHHhhhccccccc-cceeEEccccccc--cCCCccc
Confidence 34467889999999999998777654 222 79999999999999998764221 1388899988763 3357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHH
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQI 182 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~ 182 (256)
+|++...+++.++++ ...+++++.+.|+|||++++...... ....+
T Consensus 161 ~I~~~~vl~hl~d~d-------------------~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDAD-------------------FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp EEEEESCGGGSCHHH-------------------HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred eEEeeccccccchhh-------------------hHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHH
Confidence 999987776554422 56889999999999999998664221 34578
Q ss_pred HHHHHHcCCcEEEEEecC
Q 025180 183 CLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 183 ~~~~~~~g~~~~~~~~~~ 200 (256)
.+++++.||+++......
T Consensus 222 ~~l~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 222 KRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHHTCCEEEEEECT
T ss_pred HHHHHHcCCEEEEEEeeC
Confidence 899999999887665443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.72 E-value=2.2e-17 Score=134.32 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=89.4
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
.++.+.+.+... ..++++|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.+.+++++|+.+
T Consensus 23 ~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~ 95 (246)
T d1y8ca_ 23 WSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95 (246)
T ss_dssp HHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG
T ss_pred HHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccCccceeeccchhh
Confidence 344444444321 235689999999999988877765 3489999999999999999998888888999999987
Q ss_pred chhhhcCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 107 GLEKRLAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... +++||+|+|.. .+.+.. .......+++.+.+.|||||.+++..
T Consensus 96 ~~~---~~~fD~i~~~~~~~~~~~------------------~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 96 LNI---NRKFDLITCCLDSTNYII------------------DSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCC---SCCEEEEEECTTGGGGCC------------------SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcc---cccccccceeeeeeeccC------------------CHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 632 46899999832 221111 12336789999999999999999744
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=1e-16 Score=135.45 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=109.6
Q ss_pred chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE
Q 025180 23 DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI 100 (256)
Q Consensus 23 ~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~ 100 (256)
+......++...+ .++++|||+|||+|.+++.++.. +. .+|+++|+++.+++.+++|+..||+.. +++
T Consensus 131 Dqr~~r~~~~~~~-----~~g~~VLDl~~g~G~~si~~a~~----ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~ 200 (324)
T d2as0a2 131 DQRENRLALEKWV-----QPGDRVLDVFTYTGGFAIHAAIA----GA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 200 (324)
T ss_dssp TTHHHHHHHGGGC-----CTTCEEEETTCTTTHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred chhhHHHHHHhhc-----CCCCeeecccCcccchhhhhhhc----CC-cEEEeecCCHHHHHHHHHHHHHcCCCccceee
Confidence 3444444554443 47899999999999999988765 22 389999999999999999999999854 899
Q ss_pred Ecchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025180 101 NTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 101 ~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
++|+.+.+... ...+||+|++|||++....... . .+...+.+++..+.++|+|||++++++++...
T Consensus 201 ~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~-----~-------~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~ 268 (324)
T d2as0a2 201 VGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDL-----K-------AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 268 (324)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGH-----H-------HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred echhhhhhHHHHhccCCCCchhcCCccccCCHHHH-----H-------HHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 99998875432 3578999999999876543211 0 11234678899999999999999998775542
Q ss_pred -HHHH----HHHHHHcCCcEEEE
Q 025180 179 -PSQI----CLQMMEKGYAARIV 196 (256)
Q Consensus 179 -~~~~----~~~~~~~g~~~~~~ 196 (256)
.+++ .+...+.|-....+
T Consensus 269 ~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 269 DLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp CHHHHHHHHHHHHHHTTEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCeEEEe
Confidence 2333 33444455444443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=4.9e-17 Score=132.93 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=102.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC---Ccc-eEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN---VHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~---~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
.|+.+|||+|||+|.+++.++..+ +|+++|+++|+++++++.|++|+.... ..+ .+.++|+.+. ++.+++|
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~v---gp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~~~~~f 169 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSV 169 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhh---CCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--cccCCCc
Confidence 689999999999999999999987 467899999999999999999998642 233 8889998775 3346899
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMM-EKGYAARI 195 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~ 195 (256)
|.|+++.|- ...++..+.++|||||++++..|...+...+...++ +.+|....
T Consensus 170 DaV~ldlp~--------------------------P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 170 DRAVLDMLA--------------------------PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp EEEEEESSC--------------------------GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCE
T ss_pred ceEEEecCC--------------------------HHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecce
Confidence 999997652 236688999999999999998887777777777775 45676544
Q ss_pred EEe
Q 025180 196 VVQ 198 (256)
Q Consensus 196 ~~~ 198 (256)
+..
T Consensus 224 ~~E 226 (264)
T d1i9ga_ 224 AWE 226 (264)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2e-16 Score=123.07 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=95.2
Q ss_pred eeccCC-ccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~-~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...++ ..+|+++ .+.+.+++...+ .+.+|||++||+|.++++++.. +. ..|+.||.++.+++.++
T Consensus 15 l~~~~~~~~RPt~~~vre~lfn~l~~~~------~~~~vLDlfaGsG~~giealsr----Ga-~~v~~VE~~~~a~~~~k 83 (183)
T d2fpoa1 15 LPVPDSPGLRPTTDRVRETLFNWLAPVI------VDAQCLDCFAGSGALGLEALSR----YA-AGATLIEMDRAVSQQLI 83 (183)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHH
T ss_pred ecCCCCCCcCcCcHHHHHHHHhhhhccc------chhhhhhhhccccceeeeEEec----Cc-ceeEEEEEeechhhHHH
Confidence 334444 4677766 566666665554 5789999999999999988876 33 38999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccc
Q 025180 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLS 164 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lk 164 (256)
+|+..++... .++.+|+.+.+.. ...+||+|++||||.... ...++..+. .+|+
T Consensus 84 ~N~~~~~~~~~~ii~~d~~~~l~~-~~~~fDlIf~DPPY~~~~----------------------~~~~l~~l~~~~~L~ 140 (183)
T d2fpoa1 84 KNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDPPFRRGL----------------------LEETINLLEDNGWLA 140 (183)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECCSSSTTT----------------------HHHHHHHHHHTTCEE
T ss_pred HHHhhccccceeeeeecccccccc-cccccCEEEEcCccccch----------------------HHHHHHHHHHCCCCC
Confidence 9999887765 8999999887654 357899999999996311 344555543 4699
Q ss_pred cCeEEEEEEe
Q 025180 165 KRGWLYLVTL 174 (256)
Q Consensus 165 pgG~l~~~~~ 174 (256)
++|++++-+.
T Consensus 141 ~~~iIiiE~~ 150 (183)
T d2fpoa1 141 DEALIYVESE 150 (183)
T ss_dssp EEEEEEEEEE
T ss_pred CCeEEEEEec
Confidence 9999998543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.70 E-value=1.7e-16 Score=123.25 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred CccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 16 EVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 16 ~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+++ .+.+.+++... .++.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|+..+
T Consensus 19 ~~~RPt~~~vrealFn~l~~~------~~~~~vLDlfaGsG~~g~ea~sr----Ga-~~v~~ve~~~~a~~~~~~N~~~~ 87 (182)
T d2fhpa1 19 DNTRPTTDKVKESIFNMIGPY------FDGGMALDLYSGSGGLAIEAVSR----GM-DKSICIEKNFAALKVIKENIAIT 87 (182)
T ss_dssp CSSCCCCHHHHHHHHHHHCSC------CSSCEEEETTCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHh------cCCCEEEEcccccccccceeeec----ch-hHHHHHHHHHHHHHHHHHHhhhh
Confidence 35677765 44444544332 36899999999999999988886 32 37999999999999999999988
Q ss_pred CCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccCe
Q 025180 94 NVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKRG 167 (256)
Q Consensus 94 ~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG 167 (256)
+... +++++|+.+.+... ...+||+|++||||.... ....+..+. .+|+++|
T Consensus 88 ~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~----------------------~~~~l~~i~~~~~L~~~g 145 (182)
T d2fhpa1 88 KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE----------------------IVSQLEKMLERQLLTNEA 145 (182)
T ss_dssp TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC----------------------HHHHHHHHHHTTCEEEEE
T ss_pred hcccccccccccchhhhhhhcccCCCcceEEechhhhhhH----------------------HHHHHHHHHHCCCCCCCE
Confidence 8754 89999998876542 345799999999994211 345555553 5799999
Q ss_pred EEEEEEe
Q 025180 168 WLYLVTL 174 (256)
Q Consensus 168 ~l~~~~~ 174 (256)
++++-+.
T Consensus 146 iIi~E~~ 152 (182)
T d2fhpa1 146 VIVCETD 152 (182)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9887443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=4.8e-16 Score=127.16 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=107.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025180 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++....+.++..++. ..+...+ +++.+|||+|||+|.+++.+++. +.++|+++|+|+.+++.+++|+
T Consensus 83 ~d~~~~~f~~~~~~er--~ri~~~~-----~~g~~VlD~~aG~G~~~l~~a~~-----~~~~V~avd~n~~a~~~~~~N~ 150 (260)
T d2frna1 83 LDVAKIMFSPANVKER--VRMAKVA-----KPDELVVDMFAGIGHLSLPIAVY-----GKAKVIAIEKDPYTFKFLVENI 150 (260)
T ss_dssp EETTTSCCCGGGHHHH--HHHHHHC-----CTTCEEEETTCTTTTTHHHHHHH-----TCCEEEEECCCHHHHHHHHHHH
T ss_pred eccccccEecCCHHHH--HHHHhhc-----CCccEEEECcceEcHHHHHHHHh-----CCcEEEEecCCHHHHHHHHHHH
Confidence 3344556666544332 2344443 57999999999999999988876 2458999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. +++++|+.+... .+.||.|++|||.. ...++..+.++|++||+
T Consensus 151 ~~n~l~~~v~~~~~D~~~~~~---~~~~D~Ii~~~p~~-------------------------~~~~l~~a~~~l~~gG~ 202 (260)
T d2frna1 151 HLNKVEDRMSAYNMDNRDFPG---ENIADRILMGYVVR-------------------------THEFIPKALSIAKDGAI 202 (260)
T ss_dssp HHTTCTTTEEEECSCTTTCCC---CSCEEEEEECCCSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHhCCCceEEEEEcchHHhcc---CCCCCEEEECCCCc-------------------------hHHHHHHHHhhcCCCCE
Confidence 9999876 889999988753 36899999998853 23456777889999999
Q ss_pred EEEEEe--C----CCCHHHHHHHHHHcCCcEEEE
Q 025180 169 LYLVTL--T----ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 169 l~~~~~--~----~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+.+... . ....+.+.+.....|+.....
T Consensus 203 lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 203 IHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp EEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 865322 1 112345666777788876543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.3e-16 Score=134.34 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=99.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------cc-eEEEcchhhch
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----------HA-DLINTDIASGL 108 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----------~~-~~~~~d~~~~~ 108 (256)
.++.+|||+|||+|.+++.++..+ ++++.|+++|+++++++.|++|+...+. .+ .+.++|+.+..
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~v---g~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAV---GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCEEEEecccccHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 689999999999999999999987 4677999999999999999999986421 12 78899987765
Q ss_pred hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025180 109 EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 109 ~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.......||.|+++.|- ...++..+.++|||||++++..|+..+...+...++.
T Consensus 174 ~~~~~~~fD~V~LD~p~--------------------------P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~ 227 (324)
T d2b25a1 174 EDIKSLTFDAVALDMLN--------------------------PHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT 227 (324)
T ss_dssp -------EEEEEECSSS--------------------------TTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCCcceEeecCcC--------------------------HHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 54456789999998662 1245889999999999999988877766777777765
Q ss_pred c--CCcEEEEEecCC
Q 025180 189 K--GYAARIVVQRST 201 (256)
Q Consensus 189 ~--g~~~~~~~~~~~ 201 (256)
. +|..+.+.....
T Consensus 228 ~~~~f~~i~~~E~~~ 242 (324)
T d2b25a1 228 CELALSCEKISEVIV 242 (324)
T ss_dssp HTCCEEEEEEECCCC
T ss_pred cCCCceeeEEEEEEe
Confidence 4 566655554433
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=1.1e-16 Score=132.76 Aligned_cols=118 Identities=17% Similarity=0.269 Sum_probs=93.1
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
+.+.+++.+..+ .++.+|||+|||+|.++..++.. .+ ++.|+|+|+|+.+++.|+++....+.+.+++++|+.
T Consensus 14 ~l~~l~~~~~~~--~~~~~ILDiGcG~G~~~~~la~~----~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 14 YVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPL----LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTT----SCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHhcc--CCcCEEEEecCcCCHHHHHHHHh----CCCCCEEEEEecchhHhhhhhcccccccccccccccccc
Confidence 345555544322 46789999999999987776665 33 578999999999999999999888877799999987
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.. + +++||+|+++..+.+.++ ...+++++.+.|||||.+++..+
T Consensus 88 ~~~--~-~~~fD~v~~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 88 EIE--L-NDKYDIAICHAFLLHMTT---------------------PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TCC--C-SSCEEEEEEESCGGGCSS---------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc--c-cCCceEEEEehhhhcCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 752 2 468999999876655443 46789999999999999998774
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.68 E-value=8.1e-16 Score=129.25 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh--cCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR--LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~--~~~~ 115 (256)
.++++|||++||+|.+++.++.. ....|+++|+++.+++.+++|+..|++.. +++++|+.+.+... ...+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~-----ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMG-----GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-----TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCceeecCCCCcHHHHHHHhC-----CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 36899999999999999887664 12379999999999999999999999853 89999999887533 3468
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHH
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQM 186 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~ 186 (256)
||+||+|||.+...... .......+.+++..+.++|+|||++++++++.. ..+++...+
T Consensus 218 fD~Ii~DPP~f~~~~~~------------~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v 277 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKE------------VFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQI 277 (317)
T ss_dssp EEEEEECCCCC-----C------------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEcChhhccchhH------------HHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence 99999999976533321 111233477899999999999999999887543 233443333
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=6.1e-16 Score=126.32 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.+.++|||+|||+|.+++.+++. +|+..++++|+ +.+++.+++++...++.. +++.+|+.+.. ..+||+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~----~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~----~~~~D~ 149 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----PRKADA 149 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SSCEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHh----cceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----ccchhh
Confidence 35689999999999998888877 89999999998 678999999999887654 89999987643 257999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++.-.+++.++. ....+|+++.+.|||||++++.....
T Consensus 150 v~~~~vlh~~~d~-------------------~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~ 210 (253)
T d1tw3a2 150 IILSFVLLNWPDH-------------------DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG 210 (253)
T ss_dssp EEEESCGGGSCHH-------------------HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS
T ss_pred eeeccccccCCch-------------------hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCC
Confidence 9997655443332 24688999999999999999865321
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEec
Q 025180 177 ---NDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...++..+++++.||....+...
T Consensus 211 g~~rt~~e~~~ll~~AGf~~~~v~~~ 236 (253)
T d1tw3a2 211 GALRTREKWDGLAASAGLVVEEVRQL 236 (253)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 12456778899999987766544
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=2e-15 Score=120.95 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=111.2
Q ss_pred CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 16 EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 16 ~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..|+-+.. ...++..|+.-+..++.+++.+|||+|||+|..+..++..++ +++.|+|+|+++.+++.++++....+
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG---~~G~V~aVD~s~~~l~~a~~~a~~~~ 122 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---WEGKIFGIEFSPRVLRELVPIVEERR 122 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHSSCT
T ss_pred eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHHhcC
Confidence 34555544 677888888777777778999999999999999999999874 66799999999999999998875443
Q ss_pred CcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 95 VHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 95 ~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+..|...... ......+|+|+++.++.. ....++.++.+.|||||+++++.
T Consensus 123 -~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~-----------------------~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 123 -NIVPILGDATKPEEYRALVPKVDVIFEDVAQPT-----------------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp -TEEEEECCTTCGGGGTTTCCCEEEEEECCCSTT-----------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CceEEEEECCCcccccccccceEEEEEEccccc-----------------------hHHHHHHHHHHhcccCCeEEEEE
Confidence 22566677654432 223467999999876531 24678999999999999999865
Q ss_pred eCCC-----CHHHH---HHHHHHcCCcEEEEE
Q 025180 174 LTAN-----DPSQI---CLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~~~~-----~~~~~---~~~~~~~g~~~~~~~ 197 (256)
.... ..+.+ ...+.+.+|+.....
T Consensus 179 ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i 210 (227)
T d1g8aa_ 179 KSRSIDVTKEPEQVFREVERELSEYFEVIERL 210 (227)
T ss_dssp EGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ECCccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3221 22222 223345688876543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=8.2e-16 Score=121.21 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=67.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|||+|||+|.++++++.. + ...|+|+|+++.+++.+++|+..++...+++.+|..+. .++||+|+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~----g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-----~~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL----G-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHHHHc----C-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-----CCcCcEEE
Confidence 47899999999999999887654 2 24899999999999999999998888889999998664 46899999
Q ss_pred ECCCCCCC
Q 025180 121 VNPPYVPT 128 (256)
Q Consensus 121 ~npP~~~~ 128 (256)
+||||...
T Consensus 115 ~nPP~~~~ 122 (201)
T d1wy7a1 115 MNPPFGSQ 122 (201)
T ss_dssp ECCCCSSS
T ss_pred EcCccccc
Confidence 99999643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.67 E-value=9e-17 Score=125.72 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=84.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-------------cceEEEcchhh
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-------------HADLINTDIAS 106 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-------------~~~~~~~d~~~ 106 (256)
..++.+|||+|||+|..+..+++. ++.|+|+|+|+.|++.|+++....+. ...++++|+.+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 468899999999999999988876 67999999999999999998754322 22677788766
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.... ....||+|++.-.+.+.+. .....+++.+.++|||||.+++....
T Consensus 92 l~~~-~~~~~D~i~~~~~l~~l~~-------------------~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 92 LTAR-DIGHCAAFYDRAAMIALPA-------------------DMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp STHH-HHHSEEEEEEESCGGGSCH-------------------HHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccc-cccceeEEEEEeeeEecch-------------------hhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 5322 2467999998654433222 22568899999999999998876643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.67 E-value=6.2e-16 Score=126.17 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|..+..+++. . ...|+|+|+|+.|++.|+++....+.. ..++++|+...... ..++||+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~----~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~ 96 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA----G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDV 96 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH----T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHc----C-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceE
Confidence 57899999999999987777665 2 248999999999999999988776654 38899998654322 3568999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
|+|....++.... .+....+++.+.++|||||++++..+. .+.+...+....
T Consensus 97 V~~~~~l~~~~~~-----------------~~~~~~~l~~i~~~Lk~gG~~i~~~~~---~~~i~~~~~~~~ 148 (252)
T d1ri5a_ 97 ISSQFSFHYAFST-----------------SESLDIAQRNIARHLRPGGYFIMTVPS---RDVILERYKQGR 148 (252)
T ss_dssp EEEESCGGGGGSS-----------------HHHHHHHHHHHHHTEEEEEEEEEEEEC---HHHHHHHHHHTC
T ss_pred EEEcceeeecCCC-----------------HHHHHHHHHHHhceeCCCCEEEEEecC---HHHHHHHHHhcc
Confidence 9997554432221 234678999999999999999987653 445555555443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2e-15 Score=124.91 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=87.1
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~ 105 (256)
.+.+++.+ ..+++.+|||||||+|.++..+++. .+++|+|+|+|+++++.|++++...++.. .+...|..
T Consensus 41 ~~~~~~~l---~l~~g~~VLDiGCG~G~~a~~~a~~-----~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 41 VDLNLDKL---DLKPGMTLLDIGCGWGTTMRRAVER-----FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHTTS---CCCTTCEEEEESCTTSHHHHHHHHH-----HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHc---CCCCCCEEEEecCCchHHHHHHHHh-----CceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 34444444 3478999999999999998877765 25699999999999999999999888765 55556654
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+. +++||.|++.--+.+.+. ..+..+++.+.++|||||++++-+
T Consensus 113 ~~-----~~~fD~i~si~~~eh~~~-------------------~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DF-----AEPVDRIVSIEAFEHFGH-------------------ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GC-----CCCCSEEEEESCGGGTCG-------------------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hh-----ccchhhhhHhhHHHHhhh-------------------hhHHHHHHHHHhccCCCceEEEEE
Confidence 43 578999999543332221 126789999999999999999844
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3.2e-16 Score=129.14 Aligned_cols=108 Identities=13% Similarity=0.218 Sum_probs=85.5
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..++.+|||+|||+|.++..+++. ++++.++|+|+|+.+++.|+++. .+..+.++|+.+. ++.+++||+|
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l--~~~~~sfD~v 151 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADA----LPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRL--PFSDTSMDAI 151 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHT----CTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSC--SBCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHH----CCCCEEEEecchHhhhhhhhccc----ccccceeeehhhc--cCCCCCEEEE
Confidence 467899999999999988777776 77889999999999999988753 2348899998876 4557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
++.... ..++++.++|||||+++++++......++...
T Consensus 152 ~~~~~~----------------------------~~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~ 189 (268)
T d1p91a_ 152 IRIYAP----------------------------CKAEELARVVKPGGWVITATPGPRHLMELKGL 189 (268)
T ss_dssp EEESCC----------------------------CCHHHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred eecCCH----------------------------HHHHHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence 985321 11567889999999999999877665555443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.65 E-value=1.7e-15 Score=125.97 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=95.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh--cCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR--LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~--~~~~ 115 (256)
.++.+|||++||||.++++++.. ++.|++||.|+.+++.|++|+..|++.. +++++|+.+.+... ...+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 46889999999999999988764 5689999999999999999999998753 89999999887542 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-C-CHHHHHHHHH
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-N-DPSQICLQMM 187 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~-~~~~~~~~~~ 187 (256)
||+||+|||.+........ +. -...+..++..+..+|+|||.+++++... . ....+...+.
T Consensus 205 fD~IilDPP~f~~~~~~~~--~~---------~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~ 267 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEV--WQ---------LFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 267 (309)
T ss_dssp BSEEEECCCSEEECTTCCE--EE---------HHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCcccccccchh--HH---------HHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999997643332110 00 01235667788999999999766554422 2 3334444443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-15 Score=120.96 Aligned_cols=140 Identities=13% Similarity=0.009 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----------
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------- 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------- 93 (256)
...|++++...+. ..++.+|||+|||+|..+..++.. +++|+|+|+|+.+++.|+++....
T Consensus 30 ~~~l~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~ 100 (229)
T d2bzga1 30 HQLLKKHLDTFLK---GKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIP 100 (229)
T ss_dssp CHHHHHHHHHHHT---TCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTST
T ss_pred CHHHHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhhccccccchhccc
Confidence 3566666655543 257889999999999999888875 679999999999999998875432
Q ss_pred --------CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 94 --------NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 94 --------~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+...++.++|+.+... ...+.||+|+..--+++.+... ...++..+.++|||
T Consensus 101 ~~~~~~~~~~~v~~~~~d~~~l~~-~~~~~fd~i~~~~~l~~~~~~~-------------------r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 101 GTKVFKSSSGNISLYCCSIFDLPR-TNIGKFDMIWDRGALVAINPGD-------------------RKCYADTMFSLLGK 160 (229)
T ss_dssp TCEEEEETTSSEEEEESCGGGGGG-SCCCCEEEEEESSSTTTSCGGG-------------------HHHHHHHHHHTEEE
T ss_pred ccceeeecCCcEEEEEcchhhccc-cccCceeEEEEEEEEEeccchh-------------------hHHHHHHHHhhcCC
Confidence 1123788899877643 3457899999876665544332 57889999999999
Q ss_pred CeEEEEEEeCCC-----------CHHHHHHHHHHcCCcE
Q 025180 166 RGWLYLVTLTAN-----------DPSQICLQMMEKGYAA 193 (256)
Q Consensus 166 gG~l~~~~~~~~-----------~~~~~~~~~~~~g~~~ 193 (256)
||+++++..... ..+++..++.. +|.+
T Consensus 161 gG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 161 KFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp EEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 999888765332 34566777643 4544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=1.5e-14 Score=114.50 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...++..++.- ..++-+|+.+|||+|||+|..+..++.. .++.+|+|+|+++.|++.|+++....+ ...++.+|
T Consensus 39 rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~----v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d 112 (209)
T d1nt2a_ 39 RSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADI----VDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFD 112 (209)
T ss_dssp GCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHH----TTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSC
T ss_pred chHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHh----ccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEee
Confidence 44566655543 2344579999999999999999888887 456699999999999999999887654 33788888
Q ss_pred hhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....... .....+|+|+.+.++. .....++.++.+.|||||+++++.
T Consensus 113 ~~~~~~~~~~~~~vd~v~~~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 113 ASKPWKYSGIVEKVDLIYQDIAQK-----------------------NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCST-----------------------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCccccccccceEEEEEecccCh-----------------------hhHHHHHHHHHHHhccCCeEEEEE
Confidence 7765322 2234678887765432 124678999999999999999865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=3.9e-16 Score=126.24 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++. . ..++.+|+.+. ++.+++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~----~-~~~~~~~~~~l--~~~~~~fD~ii 107 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKG----V-KNVVEAKAEDL--PFPSGAFEAVL 107 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHT----C-SCEEECCTTSC--CSCTTCEEEEE
T ss_pred CCCCEEEEECCCCchhccccccc------ceEEEEeeccccccccccccc----c-ccccccccccc--cccccccccee
Confidence 46789999999999998777654 569999999999999998763 1 25777888775 34568999999
Q ss_pred ECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 121 VNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 121 ~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+.- .+++.++ ...+++++.++|||||++++..++
T Consensus 108 ~~~~~~~~~~d---------------------~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 108 ALGDVLSYVEN---------------------KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ECSSHHHHCSC---------------------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eecchhhhhhh---------------------HHHHHHHHHhhcCcCcEEEEEECC
Confidence 842 2222221 467899999999999999997653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=4.3e-16 Score=123.96 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. .+++.+|||+|||+|.++..+++.++ +++.|+++|+++++++.|++++...+..+ .++++|
T Consensus 61 P~~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~---~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d 134 (213)
T d1dl5a1 61 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD 134 (213)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred chhhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhC---CCCcEEEeecchhhHHHhhhhHhhhcccccccccCc
Confidence 355566666654 36899999999999999998888763 56799999999999999999999988876 788899
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
..+.... .++||+|+++....+ +.+.+.+.|||||++++.
T Consensus 135 ~~~~~~~--~~~fD~I~~~~~~~~---------------------------~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 135 GYYGVPE--FSPYDVIFVTVGVDE---------------------------VPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGGCCGG--GCCEEEEEECSBBSC---------------------------CCHHHHHHEEEEEEEEEE
T ss_pred hHHcccc--ccchhhhhhhccHHH---------------------------hHHHHHHhcCCCcEEEEE
Confidence 8776443 478999999754321 122345679999999873
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=8.8e-15 Score=121.41 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=91.0
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcch
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDI 104 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~ 104 (256)
..+.+.+.+. .+++.+|||||||.|.+++.+++. + +++|+|+++|++.++.+++++...++.. .+...|.
T Consensus 49 k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~----~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~ 120 (291)
T d1kpia_ 49 KRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAE----Y-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW 120 (291)
T ss_dssp HHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHH----H-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG
T ss_pred HHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHh----c-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc
Confidence 3444555543 378999999999999998888776 3 4799999999999999999999888765 5666665
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.. .+++||.|++.--+-+.++.. +..+...+..+++.+.++|||||++++-+.
T Consensus 121 ~~-----~~~~fD~i~sie~~eH~~~~~------------~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 121 EE-----FDEPVDRIVSLGAFEHFADGA------------GDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp GG-----CCCCCSEEEEESCGGGTTCCS------------SCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred cc-----cccccceEeechhHHhcchhh------------hhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 32 357999999954332222110 112334588999999999999999998543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=2.4e-15 Score=118.86 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=91.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..+ . .++|+|+|+.+++.|+++ ...++++|+.+. ++.+++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~----~------~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l--~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL----K------IKIGVEPSERMAEIARKR------GVFVLKGTAENL--PLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH----T------CCEEEESCHHHHHHHHHT------TCEEEECBTTBC--CSCTTCEEEEEE
T ss_pred CCCeEEEECCCCccccccc----c------eEEEEeCChhhccccccc------cccccccccccc--cccccccccccc
Confidence 5678999999999875332 2 468999999999998874 248999998876 334689999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----------------------C
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----------------------D 178 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~ 178 (256)
.-.+.+.++ ...+++++.++|+|||.+++..+... .
T Consensus 98 ~~~l~h~~d---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 156 (208)
T d1vlma_ 98 VTTICFVDD---------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFS 156 (208)
T ss_dssp ESCGGGSSC---------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCC
T ss_pred ccccccccc---------------------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCC
Confidence 765544432 56889999999999999999775432 2
Q ss_pred HHHHHHHHHHcCCcEEEEEe
Q 025180 179 PSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~~~~ 198 (256)
..++.+++++.||+.+.+..
T Consensus 157 ~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 157 TEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 46788999999998765543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=8.2e-15 Score=121.23 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=88.0
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhh
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIAS 106 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~ 106 (256)
+.+.+.+. .+++.+|||||||.|.+++.+++. . +++|+|+++|++.++.|++++...++.. ++..+|..+
T Consensus 52 ~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~----~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 52 DLALGKLG---LQPGMTLLDVGCGWGATMMRAVEK----Y-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ 123 (285)
T ss_dssp HHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHH----H-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHcC---CCCCCEEEEecCcchHHHHHHHhc----C-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence 44444443 479999999999999999888876 3 5899999999999999999998887654 788888755
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. +++||.|++---+-+ .+.. .+..+++.+.++|||||++++-+.
T Consensus 124 ~-----~~~fD~i~si~~~eh---------------~~~~----~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 124 F-----DEPVDRIVSIGAFEH---------------FGHE----RYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp C-----CCCCSEEEEESCGGG---------------TCTT----THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred c-----cccccceeeehhhhh---------------cCch----hHHHHHHHHHhhcCCCCcEEEEEE
Confidence 4 478999999432211 1111 267899999999999999997443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.63 E-value=1.6e-15 Score=121.61 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=90.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++++|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++.. ....++++|+.+... +++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~~---~~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQL---PRRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCCC---SSCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccc---ccccccccccccccc---ccccccccc
Confidence 5779999999999987655443 3589999999999999987642 234888888877632 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh-hccccCeEEEEEEeCCC-----------------------
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD-KLLSKRGWLYLVTLTAN----------------------- 177 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~----------------------- 177 (256)
.-.+.+.++ ...++.++. ++|+|||++++..+...
T Consensus 88 ~~vleh~~d---------------------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (225)
T d2p7ia1 88 THVLEHIDD---------------------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE 146 (225)
T ss_dssp ESCGGGCSS---------------------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH
T ss_pred cceeEecCC---------------------HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccc
Confidence 765544433 457788887 78999999999775322
Q ss_pred ---------CHHHHHHHHHHcCCcEEE
Q 025180 178 ---------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 178 ---------~~~~~~~~~~~~g~~~~~ 195 (256)
....+.+.+.+.||+...
T Consensus 147 ~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 147 FAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp HHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 234677788888887544
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.63 E-value=8e-15 Score=119.79 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=108.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
...+|||||||+|.++..+++. +|+.+++++|+ +++++.+++++...+... .++.+|+.+.. +.++|+|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~----p~~~D~v 151 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----PVTADVV 151 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SCCEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHh----hcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc----cccchhh
Confidence 4579999999999998888887 89999999997 889999999999888754 78888887643 2469999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
++.-.+++.++. ....+|+++++.|||||+++++....
T Consensus 152 ~~~~vLh~~~d~-------------------~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~ 212 (256)
T d1qzza2 152 LLSFVLLNWSDE-------------------DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG 212 (256)
T ss_dssp EEESCGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred hccccccccCcH-------------------HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCC
Confidence 996655443332 25688999999999999999876311
Q ss_pred ---CCHHHHHHHHHHcCCcEEEEEecCC--CCccEEEEEEE
Q 025180 177 ---NDPSQICLQMMEKGYAARIVVQRST--EEENLHIIKFW 212 (256)
Q Consensus 177 ---~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~l~~~~ 212 (256)
...+++.+++++.||+.+.+..... ....+.++++.
T Consensus 213 g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 213 GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253 (256)
T ss_dssp CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEE
Confidence 1245778888899998877665432 33455666654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.4e-16 Score=123.69 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=86.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++++|||||||+|..+..+++. . ..+++|+|+|+.+++.|+++....+....++..++......+.+++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~----~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEA----P-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTS----C-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHc----C-CCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence 47899999999999987766654 3 358999999999999999998776666688888887776666678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+........ ........+++.+.++|||||++++.
T Consensus 127 fD~~~~~~~~----------------~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 127 YDTYPLSEET----------------WHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp ECCCCCBGGG----------------TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eccccccccc----------------ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 8764321110 01223678899999999999999873
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=9.4e-15 Score=113.39 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=91.7
Q ss_pred ccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025180 17 VYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 17 ~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+++ .+.+.+++...+ .+.+|||++||||.++++++.. +. ..|+.||.+..+++.+++|++..+
T Consensus 22 ~~RPt~~~vrealFn~l~~~~------~~~~vLDlFaGsG~~glEalSR----GA-~~v~fVE~~~~a~~~ik~Ni~~l~ 90 (183)
T d2ifta1 22 GLRPTGDRVKETLFNWLMPYI------HQSECLDGFAGSGSLGFEALSR----QA-KKVTFLELDKTVANQLKKNLQTLK 90 (183)
T ss_dssp ------CHHHHHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcCcCcHHHHHHHHHHhhhhc------ccceEeecccCccceeeeeeee----cc-eeeEEeecccchhhhHhhHHhhhc
Confidence 5788887 777777776654 5789999999999999999876 33 389999999999999999999887
Q ss_pred Ccc---eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccCeE
Q 025180 95 VHA---DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKRGW 168 (256)
Q Consensus 95 ~~~---~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~ 168 (256)
... .++..|..+..... ...+||+|+++|||... ....++..+. .+|+++|.
T Consensus 91 ~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~----------------------~~~~~l~~l~~~~~L~~~~l 148 (183)
T d2ifta1 91 CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN----------------------LAEQAISLLCENNWLKPNAL 148 (183)
T ss_dssp CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC----------------------HHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccccccccccccccccccCCcccEEEechhHhhh----------------------hHHHHHHHHHHhCCcCCCcE
Confidence 643 66777777665432 24569999999999531 1445566554 57999999
Q ss_pred EEEEEe
Q 025180 169 LYLVTL 174 (256)
Q Consensus 169 l~~~~~ 174 (256)
+++-+.
T Consensus 149 iiiE~~ 154 (183)
T d2ifta1 149 IYVETE 154 (183)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3e-15 Score=121.94 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=99.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcce----------------------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHAD---------------------- 98 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~---------------------- 98 (256)
.++.+|||+|||+|..++.++.. + ...|+|+|+|+.+++.|++++........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~----~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD----S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG----T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc----c-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 46789999999999865433322 2 23799999999999999999876543210
Q ss_pred ---------EEEcchh--hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025180 99 ---------LINTDIA--SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 99 ---------~~~~d~~--~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
....+.. ....+...++||+|++...+.+.+. ....+..+++++.++|||||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~-----------------~~~~~~~~l~~i~~~LkpGG 187 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC-----------------SLDAYRAALCNLASLLKPGG 187 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS-----------------SHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcc-----------------cHHHHHHHHHHHHhccCCCc
Confidence 1111111 1112334678999999543322111 12346788999999999999
Q ss_pred EEEEEEeCC---------------CCHHHHHHHHHHcCCcEEEEEec-------CCCCccEEEEEEEecC
Q 025180 168 WLYLVTLTA---------------NDPSQICLQMMEKGYAARIVVQR-------STEEENLHIIKFWRDF 215 (256)
Q Consensus 168 ~l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~~~~~ 215 (256)
++++..... -..+++.+.+++.||++..+... ......++++.++|++
T Consensus 188 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 188 HLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 257 (257)
T ss_dssp EEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred EEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence 999976432 24678999999999986554321 1223446666666653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.2e-14 Score=120.96 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=86.6
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----eEEE
Q 025180 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-----DLIN 101 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-----~~~~ 101 (256)
..+++.+.+. ..++++|||+|||+|.+++.+++. ++.|+|+|+|+.|++.|+++....+... .+..
T Consensus 44 ~~~~l~~~l~---~~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~ 114 (292)
T d1xvaa_ 44 YKAWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 114 (292)
T ss_dssp HHHHHHHHHH---HTTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE
T ss_pred HHHHHHHHhh---hcCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeee
Confidence 3455555443 246789999999999998888775 4689999999999999999987766543 4555
Q ss_pred cchhhchhhh-cCCCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 102 TDIASGLEKR-LAGLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~-~~~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++....... ...+||+|+|-. .+.+.+.. .........+++++.++|||||++++...
T Consensus 115 ~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDS--------------KGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CCGGGHHHHSCCTTCEEEEEECSSCGGGSCCT--------------TSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccCCCCCceEEEEecCchhhcCCc--------------ccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 5654432221 246899999832 22222111 11123467899999999999999998554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.59 E-value=2e-14 Score=125.68 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC---------ceEEEEeCCHHHHHHH
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG---------VQYIATDINPYAVEVT 86 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~---------~~v~giD~~~~~i~~a 86 (256)
.+|+|++...++++ .+. +.++.+|+|++||+|.+++++.+.+.+.... ..++|+|+++.++..|
T Consensus 143 ~f~TP~~Iv~~mv~----ll~---~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la 215 (425)
T d2okca1 143 QYFTPRPLIQAMVD----CIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 215 (425)
T ss_dssp GGCCCHHHHHHHHH----HHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred hhccchhhhHhhhe----ecc---CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence 48999655555444 332 2467899999999999999998877644322 3599999999999999
Q ss_pred HHHHHHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025180 87 RKTLEAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 87 ~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+-|+..++... .+...|..... ...+||+|++||||............ ..+..+.. .....++..+.++|
T Consensus 216 ~~n~~l~g~~~~~~~i~~~d~l~~~---~~~~fD~Ii~NPPfg~~~~~~~~~~~--~~~~~~~~--~~~~~Fi~~~~~~L 288 (425)
T d2okca1 216 SMNLYLHGIGTDRSPIVCEDSLEKE---PSTLVDVILANPPFGTRPAGSVDINR--PDFYVETK--NNQLNFLQHMMLML 288 (425)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSC---CSSCEEEEEECCCSSCCCTTCCCCCC--TTSSSCCS--CHHHHHHHHHHHHE
T ss_pred HhhhhhcCCccccceeecCchhhhh---cccccceEEecCCCCCCccccchhhh--hhcccccc--cHHHHHHHHHHHhc
Confidence 99999888753 67788876542 24689999999999765543322111 11111111 12456889999999
Q ss_pred ccCeEEEEEEeCC---C--CHHHHHHHHHHcC
Q 025180 164 SKRGWLYLVTLTA---N--DPSQICLQMMEKG 190 (256)
Q Consensus 164 kpgG~l~~~~~~~---~--~~~~~~~~~~~~g 190 (256)
++||++.++.+.. . ....+++.+.+.+
T Consensus 289 k~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 289 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF 320 (425)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred CCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence 9999999988732 2 1246677776654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.7e-15 Score=118.69 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=86.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----c-eE
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-----A-DL 99 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-----~-~~ 99 (256)
.++..+++.+.. ..+++.+|||+|||+|..+..++++++ +..+|+++|+++++++.|++++...++. . .+
T Consensus 61 ~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~---~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 61 HMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp HHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred HHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhC---CCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 345556665421 125889999999999999988888763 5679999999999999999999876653 2 78
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+|......+ .+.||.|+++.... .+.+.+.+.|||||++++..
T Consensus 137 ~~gD~~~~~~~--~~~fD~I~~~~~~~---------------------------~ip~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 137 VVGDGRMGYAE--EAPYDAIHVGAAAP---------------------------VVPQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EESCGGGCCGG--GCCEEEEEECSBBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEeecccccch--hhhhhhhhhhcchh---------------------------hcCHHHHhhcCCCcEEEEEE
Confidence 88998776443 47899999964322 11234567899999999843
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=1.1e-14 Score=113.74 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=59.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.|++|||+|||+|.+++.++.. ++ ..|+|+|+++.+++.|++|+. ..+++++|+.+. +++||+|+
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~----ga-~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~l-----~~~fD~Vi 112 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLL----GA-ESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWI 112 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT----TB-SEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc----CC-CcccccccCHHHHHHHHHccc----cccEEEEehhhc-----CCcceEEE
Confidence 47899999999999998877765 22 379999999999999998853 348999998664 47899999
Q ss_pred ECCCCCC
Q 025180 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||..
T Consensus 113 ~NPPfg~ 119 (197)
T d1ne2a_ 113 MNPPFGS 119 (197)
T ss_dssp ECCCC--
T ss_pred eCcccch
Confidence 9999953
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.3e-14 Score=118.40 Aligned_cols=132 Identities=9% Similarity=0.102 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhhccc----c-cCCCCEEEEecccccHHHHHHHHHhcccCCC--ceEEEEeCCHHHHHHHHHHHHHcC-C
Q 025180 24 SFALVDALLADRINL----V-EHHPVLCMEVGCGSGYVITSLALMLGQEVPG--VQYIATDINPYAVEVTRKTLEAHN-V 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~----~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~--~~v~giD~~~~~i~~a~~~~~~~~-~ 95 (256)
...+-+++.+.++.+ . .++..+|||+|||+|.++..++..+...+++ ..++|+|+|+.|++.+++++.... .
T Consensus 17 ~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~ 96 (280)
T d1jqea_ 17 HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL 96 (280)
T ss_dssp HHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc
Confidence 444445544444322 1 2344589999999999998888877655554 468999999999999999886532 2
Q ss_pred cc---eEEEcchhhch----hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 96 HA---DLINTDIASGL----EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 96 ~~---~~~~~d~~~~~----~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
.. .+...++.+.. ....+++||+|++.-.+++.++ ...+++.+.++|+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~ 155 (280)
T d1jqea_ 97 ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD---------------------IPATLKFFHSLLGTNAK 155 (280)
T ss_dssp TTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC---------------------HHHHHHHHHHTEEEEEE
T ss_pred ccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCC---------------------HHHHHHHHHhhCCCCCE
Confidence 22 45566554432 2234688999999766554433 56889999999999999
Q ss_pred EEEEEeCC
Q 025180 169 LYLVTLTA 176 (256)
Q Consensus 169 l~~~~~~~ 176 (256)
++++....
T Consensus 156 l~i~~~~~ 163 (280)
T d1jqea_ 156 MLIIVVSG 163 (280)
T ss_dssp EEEEEECT
T ss_pred EEEEEecC
Confidence 99877543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.56 E-value=3e-14 Score=113.43 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=109.4
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025180 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|+|. .+++.+++.+. ..++.+|||+|||+|.++.++.+.. .....++|+|+++.+++.++ .
T Consensus 1 v~TP~----~i~~~m~~l~~---~~~~~~IlDp~~G~G~fl~~~~~~~---~~~~~i~g~ei~~~~~~~~~--------~ 62 (223)
T d2ih2a1 1 VETPP----EVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAH---GTAYRFVGVEIDPKALDLPP--------W 62 (223)
T ss_dssp CCCCH----HHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHH---CSCSEEEEEESCTTTCCCCT--------T
T ss_pred CCCCH----HHHHHHHHhcC---CCCcCEEEECCCchHHHHHHHHHhc---cccceEEeeecCHHHHhhcc--------c
Confidence 57884 44455554443 2578899999999999988776653 23468999999987654332 2
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc-------hh-hhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025180 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI-------AS-AWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..++++|...... ...||+|++||||............. .. .........+....++..+.+.|++||+
T Consensus 63 ~~~~~~~~~~~~~---~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~ 139 (223)
T d2ih2a1 63 AEGILADFLLWEP---GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 139 (223)
T ss_dssp EEEEESCGGGCCC---SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred ceeeeeehhcccc---ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCc
Confidence 3778888766532 36899999999997654432211111 00 1111122223456788999999999999
Q ss_pred EEEEEeCCC----CHHHHHHHHHHcCCcEEEEEecCC--CCccEEEEEEEecC
Q 025180 169 LYLVTLTAN----DPSQICLQMMEKGYAARIVVQRST--EEENLHIIKFWRDF 215 (256)
Q Consensus 169 l~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~l~~~~~~~ 215 (256)
+.++.+..- ....+++++.+.+.-......... ......++.+.|..
T Consensus 140 ~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i~~~~~~F~~~~v~t~i~~~~k~~ 192 (223)
T d2ih2a1 140 LVFVVPATWLVLEDFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSG 192 (223)
T ss_dssp EEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEESCSTTCCCCEEEEEEESSS
T ss_pred eEEEEeeeeccCcchHHHHHHHHhcCCEEEEcchhcCCCCCCcEEEEEEEeCC
Confidence 999887432 345677777766432222222221 22344555555543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.5e-13 Score=117.44 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=112.3
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025180 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+ ++++.+. .+.+++.+++.+. ..++.+|||+.||+|.+++.+++. ..+|+|+|+++.+++.|++
T Consensus 182 ~~i~p~sFfQ~N~~~~e~l~~~v~~~~~---~~~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~ 252 (358)
T d1uwva2 182 LTFSPRDFIQVNAGVNQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQ 252 (358)
T ss_dssp EECCSSSCCCSBHHHHHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHH
T ss_pred EEECCchhhccchhhhhHHHHHHHHhhc---cCCCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHH
Confidence 344554 7888877 7888888887764 256789999999999999988875 3489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..|++.+ .++.+|..+.+.. .....+|+||.|||=. | ..+.+..+.+ ++|
T Consensus 253 na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~---------------------G---~~~~~~~l~~-~~~ 307 (358)
T d1uwva2 253 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARA---------------------G---AAGVMQQIIK-LEP 307 (358)
T ss_dssp HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTT---------------------C---CHHHHHHHHH-HCC
T ss_pred hHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCc---------------------c---HHHHHHHHHH-cCC
Confidence 999999987 9999998876542 2346799999999921 1 1234555554 477
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025180 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.-++|+++.+.+...++. .+.+.||....+..
T Consensus 308 ~~ivYVSCnp~TlaRDl~-~l~~~gy~l~~i~~ 339 (358)
T d1uwva2 308 IRIVYVSCNPATLARDSE-ALLKAGYTIARLAM 339 (358)
T ss_dssp SEEEEEESCHHHHHHHHH-HHHHTTCEEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHH-HHHHCCCeEeEEEE
Confidence 777777654444444443 34467888766553
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=4e-13 Score=120.25 Aligned_cols=161 Identities=9% Similarity=0.109 Sum_probs=107.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCC--------------ceEEEEeCCH
Q 025180 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPG--------------VQYIATDINP 80 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~--------------~~v~giD~~~ 80 (256)
..+|+|+....++++. +. +.++.+|+|++||+|.+++.+.+.+...... ..++|+|+++
T Consensus 144 GqfyTP~~Iv~~mv~l----l~---~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~ 216 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHL----LK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 216 (524)
T ss_dssp -CCCCCHHHHHHHHHH----HC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH
T ss_pred chhccccchhHhhhhc----cc---CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCH
Confidence 4499997655555543 32 2467899999999999999888876543321 2699999999
Q ss_pred HHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHH
Q 025180 81 YAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDK 154 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.++..|+-|+..++... .+...+..... .....+||+|++||||........... ...... .....
T Consensus 217 ~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~-----~~~~~~--~~~~~ 288 (524)
T d2ar0a1 217 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRT-----FVHPTS--NKQLC 288 (524)
T ss_dssp HHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSC-----CSSCCS--CHHHH
T ss_pred HHHHHHHHHHHhhcccccccccchhhhhhhhhhc-ccccccceeEEecCCccccccccchhh-----hccccc--cccHH
Confidence 99999999998877643 34444443321 112467999999999976544321110 011111 11345
Q ss_pred HHHHHhhccccCeEEEEEEeCC---C-C-HHHHHHHHHHcC
Q 025180 155 ILPSADKLLSKRGWLYLVTLTA---N-D-PSQICLQMMEKG 190 (256)
Q Consensus 155 ~l~~~~~~LkpgG~l~~~~~~~---~-~-~~~~~~~~~~~g 190 (256)
+++.+.+.|++||++.++.|.. + . ...+++.+.+.+
T Consensus 289 Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 289 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC
Confidence 8899999999999999988732 1 2 245677776654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=2.6e-13 Score=105.62 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=102.2
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch
Q 025180 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL 108 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~ 108 (256)
+.+++.+. ..++..|||++||+|..+..+++. .|++.|+|+|.++.|++.|++++...+....++++++.+..
T Consensus 13 ~evi~~l~---~~~~~~~lD~t~G~Gghs~~il~~----~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 13 REVIEFLK---PEDEKIILDCTVGEGGHSRAILEH----CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 85 (192)
T ss_dssp HHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHhhC---CCCCCEEEEecCCCcHHHHHHHhc----CCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHH
Confidence 34444443 368899999999999998877776 67889999999999999999998776656688888876542
Q ss_pred ---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH
Q 025180 109 ---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ 185 (256)
Q Consensus 109 ---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 185 (256)
.....++||.|+.+..+. . ..+.....+.......+..+.++|+|||++++++........+.+.
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvS---s---------~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~ 153 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVS---T---------YQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET 153 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCC---H---------HHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHcCCCCcceeeeccchh---H---------hhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence 233357899999986652 1 1112233456678899999999999999999877433222233444
Q ss_pred HHH
Q 025180 186 MME 188 (256)
Q Consensus 186 ~~~ 188 (256)
+.+
T Consensus 154 f~~ 156 (192)
T d1m6ya2 154 FRN 156 (192)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.47 E-value=1.6e-13 Score=108.64 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. .+++.+|||+|||+|..+..++++++ ..|+++|.++..++.|++++...+..+ .++++|
T Consensus 64 P~~~a~ml~~L~---l~~g~~VLeIGsGsGY~taila~l~g-----~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd 135 (215)
T d1jg1a_ 64 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 135 (215)
T ss_dssp HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hhhHHHHHHhhc---cCccceEEEecCCCChhHHHHHHhhC-----ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence 445566666654 36899999999999999998888753 479999999999999999999999876 999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+..+. .+.||.|++...... +-..+.+.|+|||++++..
T Consensus 136 ~~~g~~~--~~pfD~Iiv~~a~~~---------------------------ip~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 136 GSKGFPP--KAPYDVIIVTAGAPK---------------------------IPEPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GGGCCGG--GCCEEEEEECSBBSS---------------------------CCHHHHHTEEEEEEEEEEE
T ss_pred cccCCcc--cCcceeEEeeccccc---------------------------CCHHHHHhcCCCCEEEEEE
Confidence 9887554 478999999643211 1222445799999999843
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.46 E-value=1e-13 Score=110.41 Aligned_cols=109 Identities=23% Similarity=0.216 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+...+++.+. -+++.+|||+|||+|.++..++++. .+|+++|+++++++.|++++... .+..++.+|..
T Consensus 57 ~~~a~ml~~L~---l~~g~~VLdIG~GsGy~ta~La~l~------~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~ 126 (224)
T d1vbfa_ 57 NLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGT 126 (224)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGG
T ss_pred hhHHHHHHHhh---hcccceEEEecCCCCHHHHHHHHHh------cccccccccHHHHHHHHHHHhcc-cccccccCchh
Confidence 34445566554 2689999999999999998888762 48999999999999999886533 23389999987
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
...++ .++||.|+++.... .+...+.+.|||||++++..
T Consensus 127 ~g~~~--~~pfD~Iiv~~a~~---------------------------~ip~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 127 LGYEE--EKPYDRVVVWATAP---------------------------TLLCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GCCGG--GCCEEEEEESSBBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred hcchh--hhhHHHHHhhcchh---------------------------hhhHHHHHhcCCCCEEEEEE
Confidence 76544 47899999864321 11233456799999999843
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.9e-13 Score=112.03 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEc
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~ 102 (256)
..+.+.|..... ..++++|||+|||+|.+++.+++. ++ .+|+|+|.++.+.. +++++..++... .++++
T Consensus 21 ~~y~~ai~~~~~---~~~~~~VLDiGcG~G~lsl~aa~~----Ga-~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~ 91 (311)
T d2fyta1 21 ESYRDFIYQNPH---IFKDKVVLDVGCGTGILSMFAAKA----GA-KKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKG 91 (311)
T ss_dssp HHHHHHHHHCGG---GTTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHhccc---cCCcCEEEEECCCCCHHHHHHHHc----CC-CEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEe
Confidence 344454544322 247899999999999998888775 33 38999999998764 566666666543 88999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|+.+... ...+||+|++.+..+..... .....++....++|||||+++.
T Consensus 92 ~~~~l~~--~~~~~D~Ivse~~~~~~~~e------------------~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 92 KIEEVHL--PVEKVDVIISEWMGYFLLFE------------------SMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CTTTSCC--SCSCEEEEEECCCBTTBTTT------------------CHHHHHHHHHHHHEEEEEEEES
T ss_pred eHHHhcC--ccccceEEEEeeeeeecccc------------------cccHHHHHHHHhcCCCCcEEec
Confidence 9888633 35789999998765432221 1366778888899999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=3e-13 Score=114.17 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=80.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. +. ..|+|+|.++ +++.|++++..++... .++++|+.+.. ..+.+||+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~----Ga-~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~~~~~~D~ 108 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH----GA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDI 108 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----CC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh----CC-CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--CcccceeE
Confidence 37899999999999998877775 22 3899999997 6788999999888754 88999988763 33578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++.+........ .....++....++|||||+++
T Consensus 109 i~se~~~~~~~~e------------------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYE------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccc------------------hhHHHHHHHHHhccCCCeEEE
Confidence 9997654322221 125778888899999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-13 Score=110.53 Aligned_cols=135 Identities=14% Similarity=0.084 Sum_probs=89.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-----------------------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA----------------------- 97 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----------------------- 97 (256)
..+.+|||+|||+|.+++..+. +.. .+|+|+|+++.|++.+++.+...+...
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~----~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSAC----SHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG----GGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhc----ccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 4688999999999976422221 122 379999999999999998764322110
Q ss_pred --------eEEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025180 98 --------DLINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 98 --------~~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
.+...|+..... +..+++||+|++.....+.+ .....+..+++++.++|||
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----------------~~~~~~~~~l~~~~~~LkP 190 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----------------PDLASFQRALDHITTLLRP 190 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----------------SSHHHHHHHHHHHHTTEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc-----------------cCHHHHHHHHHHHHHHcCC
Confidence 233445443221 12346799999954321111 1123468899999999999
Q ss_pred CeEEEEEEeC---------------CCCHHHHHHHHHHcCCcEEEEE
Q 025180 166 RGWLYLVTLT---------------ANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 166 gG~l~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
||.+++...- .-..+++.+.+.+.||+.+...
T Consensus 191 GG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 191 GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999985531 1256899999999999875543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=2.3e-13 Score=114.29 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=80.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.+++.+++. ++ ..|+|+|.++. ...+++++..+++.. .++++|+.+.. ...++||+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~----Ga-~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~--~~~~~~D~ 103 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA----GA-RKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE--LPVEKVDI 103 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSSCEEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHh----CC-CEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc--cccceeEE
Confidence 37899999999999998888775 32 37999999975 577788888888764 88899988863 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++....+..... ..+..++..+.++|||||+++
T Consensus 104 ivs~~~~~~l~~e------------------~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 104 IISEWMGYCLFYE------------------SMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEECCCBBTBTBT------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred EeeeeeeeeeccH------------------HHHHHHHHHHHhcCCCCeEEE
Confidence 9997654322211 126788999999999999987
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=9.1e-12 Score=102.70 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=109.9
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+...+.+..++..++. ..++.+|||+|+|.|.-+..++.. ..+..|+++|+++..++.+++++.+.|.
T Consensus 82 G~~~vQD~sS~l~~~~L~------~~~g~~vLD~CAaPGgKt~~la~l----~~~~~i~a~d~~~~R~~~l~~~~~r~g~ 151 (284)
T d1sqga2 82 GWVTVQDASAQGCMTWLA------PQNGEHILDLCAAPGGKTTHILEV----APEAQVVAVDIDEQRLSRVYDNLKRLGM 151 (284)
T ss_dssp TSEEECCHHHHTHHHHHC------CCTTCEEEEESCTTCHHHHHHHHH----CTTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred cEEEeccccccccccccC------ccccceeEeccCccccchhhhhhh----hhhhhhhhhhcchhhhhhHhhhhhcccc
Confidence 334444445555554443 268899999999999999988876 3456899999999999999999999998
Q ss_pred cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEE
Q 025180 96 HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 96 ~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.+.....+..........+.||.|++++|-.... ..++.+...|.-.... ......+|..+.++|||||+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G---~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvY 228 (284)
T d1sqga2 152 KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATG---VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY 228 (284)
T ss_dssp CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGG---GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cceeeeccccccchhcccccccEEEEeccccccC---ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 8744443333222223357899999999975432 2233343333222221 22566888999999999999999
Q ss_pred EEeCCCCH---HHHHHHHHHc
Q 025180 172 VTLTANDP---SQICLQMMEK 189 (256)
Q Consensus 172 ~~~~~~~~---~~~~~~~~~~ 189 (256)
++++.... ..+...++++
T Consensus 229 sTCS~~~~ENE~vv~~~l~~~ 249 (284)
T d1sqga2 229 ATCSVLPEENSLQIKAFLQRT 249 (284)
T ss_dssp EESCCCGGGTHHHHHHHHHHC
T ss_pred eeecCchhhCHHHHHHHHHhC
Confidence 99877533 3455555553
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.41 E-value=3.1e-13 Score=107.69 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=85.0
Q ss_pred HHHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccC--CCceEEEEeCCHHHHHHHHHHHHHcC-----Ccc-
Q 025180 27 LVDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEV--PGVQYIATDINPYAVEVTRKTLEAHN-----VHA- 97 (256)
Q Consensus 27 l~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~--~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~- 97 (256)
+...+++.+. .+ +++.+|||+|||+|..+..++++++..+ ++.+|+++|+++++++.|++|+.... ..+
T Consensus 66 ~~a~~l~~L~~~l--~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv 143 (223)
T d1r18a_ 66 MHAFALEYLRDHL--KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 143 (223)
T ss_dssp HHHHHHHHTTTTC--CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHhhcc--CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence 4455666542 22 5889999999999999999998876432 34589999999999999999876543 223
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+..+|..+..++ .+.||.|+++.... .+-..+.+.|||||++++..
T Consensus 144 ~~~~~d~~~~~~~--~~~fD~Iiv~~a~~---------------------------~~p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 144 LIVEGDGRKGYPP--NAPYNAIHVGAAAP---------------------------DTPTELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEESCGGGCCGG--GCSEEEEEECSCBS---------------------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEEeccccccccc--ccceeeEEEEeech---------------------------hchHHHHHhcCCCcEEEEEE
Confidence 8889998876544 47899999965421 11233467899999998743
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.5e-12 Score=100.93 Aligned_cols=127 Identities=15% Similarity=0.205 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
.+.+..++++.+..++--++.+|+|+|||.|..++.+|.. +|+.+++.+|.+..-+...++-+...++++ ++++.
T Consensus 47 ~~~~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~----~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~ 122 (207)
T d1jsxa_ 47 NEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS 122 (207)
T ss_dssp -CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred HHHHHHHhcchHhhhhhhcCCceeeeeccCCceeeehhhh----cccceEEEEecchHHHHHHHHHHHHcCCcceeeecc
Confidence 4556667777765444446789999999999999999987 899999999999999999999999999876 89999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025180 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
++.+... ..+||+|++- ++ ..+..+++-+..+++++|++++. .+....+++
T Consensus 123 R~E~~~~---~~~fD~V~sR------------------A~-------~~~~~ll~~~~~~l~~~g~~~~~-KG~~~~eEl 173 (207)
T d1jsxa_ 123 RVEEFPS---EPPFDGVISR------------------AF-------ASLNDMVSWCHHLPGEQGRFYAL-KGQMPEDEI 173 (207)
T ss_dssp CTTTSCC---CSCEEEEECS------------------CS-------SSHHHHHHHHTTSEEEEEEEEEE-ESSCCHHHH
T ss_pred chhhhcc---ccccceehhh------------------hh-------cCHHHHHHHHHHhcCCCcEEEEE-CCCCHHHHH
Confidence 9887643 3589999882 11 12678999999999999999984 445555554
Q ss_pred H
Q 025180 183 C 183 (256)
Q Consensus 183 ~ 183 (256)
.
T Consensus 174 ~ 174 (207)
T d1jsxa_ 174 A 174 (207)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.5e-12 Score=108.36 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV- 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~- 95 (256)
...+++.+++.+. .+++.+|||+|||+|.+++.+++. .+...++|+|+++.+++.|+++.... |.
T Consensus 136 ~~~~~~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~----~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 136 SFDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAA----TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp CHHHHHHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHH----CCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHH----hCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3445556666543 368899999999999999988877 55568999999999999998876542 22
Q ss_pred --cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 96 --HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 96 --~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+++++|+.+......-...|+|++|--.+ . ..+...+.++.+.|||||+++..
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f-~---------------------~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-G---------------------PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECCTTT-C---------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEECcccccccccccCcceEEEEcceec-c---------------------hHHHHHHHHHHHhCCCCcEEEEe
Confidence 2389999998753211001358888863221 1 12567789999999999999874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=4.5e-12 Score=100.31 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=89.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
++++|||+|||+|..++.+++.+. ++++|+++|+++++++.|++++...|+.. +++.+|..+.++.+ ..+.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~---~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCC---CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 678999999999999998887653 46799999999999999999999999865 89999998876543 2367
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
||+|+.+.- +........+..+.++|+|||++++-..-.....+..+.+++.
T Consensus 133 ~D~ifiD~~----------------------~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~~ 184 (214)
T d2cl5a1 133 LDMVFLDHW----------------------KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGS 184 (214)
T ss_dssp EEEEEECSC----------------------GGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHHC
T ss_pred cceeeeccc----------------------ccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhcc
Confidence 999998621 1111123346677889999998776111122223445555544
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.4e-12 Score=100.06 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=86.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~ 114 (256)
...++|||+|||+|..++++++.+. ++++++++|.+++..+.|++++...++.. +++.+|+.+.++.. ..+
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~---~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALP---ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCC---CCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 3679999999999999999988763 36799999999999999999999998765 89999988876543 257
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+--. ..+...++.+.++|+|||.+++
T Consensus 135 ~fD~ifiD~dk------------------------~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 135 TFDVAVVDADK------------------------ENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp CEEEEEECSCS------------------------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEeCCH------------------------HHHHHHHHHHHHHhcCCcEEEE
Confidence 89999996211 1256778889999999999998
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.34 E-value=7.5e-12 Score=99.67 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-----cCC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-----LAG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-----~~~ 114 (256)
.+++|||+|+++|.-++.+++.+. ++++++.+|.+++..+.|++++...|+.. +++.+++.+.++.. ..+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~---~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIP---EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSC---TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred CCCcEEEecchhhhhHHHHHhhCC---CCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence 679999999999999999998864 35799999999999999999999999865 89999998887654 246
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- + ..+...++.+.++|+|||.+++
T Consensus 136 ~fD~iFiDa~----------------------k--~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 136 SYDFIFVDAD----------------------K--DNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp CBSEEEECSC----------------------S--TTHHHHHHHHHHHBCTTCCEEE
T ss_pred ceeEEEeccc----------------------h--hhhHHHHHHHHhhcCCCcEEEE
Confidence 8999999621 1 1167888999999999999998
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=7.5e-11 Score=98.35 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=110.7
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+...+.+..++..++. ..++.+|||+|+|.|.-+..++..+. .++.+++.|+++..++.+++++.+.+.
T Consensus 96 G~~~vQD~aS~l~~~~l~------~~~g~~vlD~CAapGgKt~~l~~~~~---~~~~i~a~d~~~~r~~~l~~~~~r~~~ 166 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALD------PKPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGV 166 (313)
T ss_dssp TSEEECCHHHHHHHHHHC------CCTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEecccccchhhccc------CCccceeeecccchhhhhHhhhhhcc---cccceeeeccCHHHHHHHHHHHHHHHh
Confidence 344444445555555543 26889999999999999888888754 356899999999999999999999988
Q ss_pred cc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEE
Q 025180 96 HA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+ .+...|.... +.....||.|++++|-.....- ++.+...|.-... -.....+++..+..+|||||+++
T Consensus 167 ~~i~~~~~d~~~~--~~~~~~fD~ILvDaPCSg~G~~---~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV 241 (313)
T d1ixka_ 167 LNVILFHSSSLHI--GELNVEFDKILLDAPCTGSGTI---HKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV 241 (313)
T ss_dssp CSEEEESSCGGGG--GGGCCCEEEEEEECCTTSTTTC---C--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccccccccc--ccccccccEEEEccccccCCce---eeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE
Confidence 76 5566665554 2235789999999997644332 2222222211111 11256678899999999999999
Q ss_pred EEEeCCCC---HHHHHHHHHHcCCc
Q 025180 171 LVTLTAND---PSQICLQMMEKGYA 192 (256)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~g~~ 192 (256)
.++++... ...+...+++.+++
T Consensus 242 YsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 242 YSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp EEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EeeccCChHhHHHHHHHHHhcCCCE
Confidence 99987653 33455555655543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=1.4e-12 Score=112.21 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc-
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA- 97 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~- 97 (256)
-++..+++.+. -+++.+|||+|||+|.+++.+|.. .+...++|+|+++.+++.|+++....+ ...
T Consensus 203 ~~i~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~----~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 203 NFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALE----CGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp HHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHH----HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHH----cCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 34455555543 378999999999999999988887 444589999999999999999887542 111
Q ss_pred --eE-EEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 98 --DL-INTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 98 --~~-~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+ ..+++..... ...-..+|+|++|--.+ . ..+...+.++.+.|||||+++..
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f-~---------------------~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-D---------------------EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-C---------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred cceeeeeechhhccccccccccceEEEEecccC-c---------------------hHHHHHHHHHHHhcCCCcEEEEe
Confidence 11 2333332211 11124678998863111 1 12678899999999999999874
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.23 E-value=4.9e-10 Score=89.29 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=109.5
Q ss_pred CchHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025180 22 DDSFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
...+.+..++++.+..+. .....+|+|+|+|.|..++.++.. .|+.+++.+|.+..-+...+..+...++++
T Consensus 47 ~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~----~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~ 122 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRITFLEKLSEALQLENT 122 (239)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHh----CCCccceeecchHHHHHHHHHHHHHhCCCCc
Confidence 335666777777764332 135689999999999999999988 788999999999999999999999999987
Q ss_pred eEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 98 DLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 ~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+++.++.+.... ...++||+|++- ++ ..+..+++-+..++++||++++. .+.
T Consensus 123 ~i~~~R~E~~~~~~~~~~~~D~v~sR------------------Av-------a~l~~ll~~~~~~l~~~g~~i~~-KG~ 176 (239)
T d1xdza_ 123 TFCHDRAETFGQRKDVRESYDIVTAR------------------AV-------ARLSVLSELCLPLVKKNGLFVAL-KAA 176 (239)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEEE------------------CC-------SCHHHHHHHHGGGEEEEEEEEEE-ECC
T ss_pred EEEeehhhhccccccccccceEEEEh------------------hh-------hCHHHHHHHHhhhcccCCEEEEE-CCC
Confidence 8888888776432 124689999982 11 12788999999999999999884 445
Q ss_pred CCHHHH---HHHHHHcCCcEEEEE
Q 025180 177 NDPSQI---CLQMMEKGYAARIVV 197 (256)
Q Consensus 177 ~~~~~~---~~~~~~~g~~~~~~~ 197 (256)
...+++ .+.+...++....+.
T Consensus 177 ~~~~El~~a~~~~~~~~~~~~~v~ 200 (239)
T d1xdza_ 177 SAEEELNAGKKAITTLGGELENIH 200 (239)
T ss_dssp -CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ChHHHHHHHHHHHHHcCCEEEEEE
Confidence 555544 445566677765443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.2e-10 Score=94.68 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=99.7
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
+.+...+.+..++..++.. .++.+|||+|+|.|.-+..++..+. .+..|+++|+++..++.+++++.+.|+
T Consensus 74 G~~~~QD~sS~l~~~~L~~------~~g~~vLD~cAapGgKt~~la~l~~---~~~~i~a~d~~~~R~~~l~~~l~r~g~ 144 (293)
T d2b9ea1 74 GHLILQDRASCLPAMLLDP------PPGSHVIDACAAPGNKTSHLAALLK---NQGKIFAFDLDAKRLASMATLLARAGV 144 (293)
T ss_dssp TSEEECCTGGGHHHHHHCC------CTTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cEEEEcCCcccccccccCC------CccceEEecccchhhHHHHHHHHhc---CCceEeeecCCHHHHHHHHHHHHhcCc
Confidence 3444555555555555442 5889999999999999998888764 356899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhc--CCCCc----HHHHHHHHHHHhhccccCe
Q 025180 96 HA-DLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWA--GGENG----RAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~~~LkpgG 167 (256)
.+ .+...|........ ..++||.|++++|-..... .++.+...|. ..... ......++..+. .|++||
T Consensus 145 ~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~---~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG 220 (293)
T d2b9ea1 145 SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM---PSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQ 220 (293)
T ss_dssp CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC---------------------CCHHHHHHHHHHHHHHHT-TCTTCC
T ss_pred cceeeeehhhhhhcccccccceeeEEeecCcccchhh---hcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hccccc
Confidence 87 88888887654321 2367999999999654332 1122222221 11111 113445666666 479999
Q ss_pred EEEEEEeCCC
Q 025180 168 WLYLVTLTAN 177 (256)
Q Consensus 168 ~l~~~~~~~~ 177 (256)
+++.++++..
T Consensus 221 ~lvYsTCSl~ 230 (293)
T d2b9ea1 221 RLVYSTCSLC 230 (293)
T ss_dssp EEEEEESCCC
T ss_pred EEEEeeccCC
Confidence 9999998765
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=3.1e-10 Score=91.26 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=96.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
...+|||+|||+|.+++.+++. +|+.+++..|+ |..++. .+. ..+++.+|+.+..+ ..|++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~-------~~~~~ri~~~~gd~~~~~p-----~~D~~ 143 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISK----YPLIKGINFDL-PQVIEN-------APPLSGIEHVGGDMFASVP-----QGDAM 143 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTT-------CCCCTTEEEEECCTTTCCC-----CEEEE
T ss_pred CCcEEEEecCCCcHHHHHHHHH----CCCCeEEEecc-hhhhhc-------cCCCCCeEEecCCcccccc-----cceEE
Confidence 4589999999999998888887 99999999998 444432 222 23888999876532 34999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-----------------------
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------- 176 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 176 (256)
++.-..+..+++ ....+|+.+++.|+|||+++++....
T Consensus 144 ~l~~vLh~~~de-------------------~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~ 204 (244)
T d1fp1d2 144 ILKAVCHNWSDE-------------------KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT 204 (244)
T ss_dssp EEESSGGGSCHH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH
T ss_pred EEehhhhhCCHH-------------------HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhh
Confidence 986554443332 25688999999999999999976311
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025180 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+..++..+++++.||+...+..... ..+.+++++|
T Consensus 205 ~~g~ert~~e~~~ll~~AGF~~v~v~~~~~--~~~~viE~~K 244 (244)
T d1fp1d2 205 VGGRERTEKQYEKLSKLSGFSKFQVACRAF--NSLGVMEFYK 244 (244)
T ss_dssp HSCCCEEHHHHHHHHHHTTCSEEEEEEEET--TTEEEEEEEC
T ss_pred CCCcCCCHHHHHHHHHHcCCCceEEEecCC--CCEEEEEEeC
Confidence 0245778899999999877664322 2446777765
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=99.13 E-value=1.3e-10 Score=93.19 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=93.7
Q ss_pred cCCccccCCchHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccC------------------------
Q 025180 14 HPEVYEPCDDSFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEV------------------------ 68 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~------------------------ 68 (256)
|..-+.|..... ++..++.....+. -..+..++|++||+|++.++++.+....-
T Consensus 22 ~~~~~~~~~~~~-Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~ 100 (249)
T d1o9ga_ 22 HSAPGYPAFPVR-LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLS 100 (249)
T ss_dssp CCBTTBCCCCHH-HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTS
T ss_pred ccCCCCCCcchH-HHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHH
Confidence 344455655544 4444333322111 23557899999999999999998643221
Q ss_pred ------------CCceEEEEeCCHHHHHHH---HHHHHHcCCcc--eEEEcchhhchhh--h-cCCCccEEEECCCCCCC
Q 025180 69 ------------PGVQYIATDINPYAVEVT---RKTLEAHNVHA--DLINTDIASGLEK--R-LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 69 ------------~~~~v~giD~~~~~i~~a---~~~~~~~~~~~--~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~ 128 (256)
....++|.|+++.+++.| ++|+...++.. .+.+.|+++..+. . .....++||+||||...
T Consensus 101 ~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGER 180 (249)
T d1o9ga_ 101 PAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER 180 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred HHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccc
Confidence 113578999999999988 46888888765 7888888765431 1 24568999999999754
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-..+ +......+..+...+.+.|.....+++
T Consensus 181 l~~~------------~~~~~~~~~~~~~~l~~~~p~~s~~~i 211 (249)
T d1o9ga_ 181 THWE------------GQVPGQPVAGLLRSLASALPAHAVIAV 211 (249)
T ss_dssp SSSS------------SCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cccc------------ccchHHHHHHHHHHHHccCCCCcEEEE
Confidence 4321 111234467778888888855555555
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.12 E-value=2.3e-10 Score=95.14 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=82.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--C----CcceEEEcchhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--N----VHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~----~~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||.+|.|.|..+.++++. .+..+|+++|++++.++.|++.+... + ...+++.+|+.+.+.. .+.
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~----~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~ 150 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH----PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEE 150 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCC
T ss_pred CCcceEEEeCCCchHHHHHHHhc----CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCC
Confidence 46799999999999975444332 56679999999999999999987542 1 1238999999998765 357
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++.+ +...... ..+ ...++++.+.+.|+|||++++-.
T Consensus 151 ~yDvIi~D~~dp~~~~~~~--------~~L--------~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 151 RYDVVIIDLTDPVGEDNPA--------RLL--------YTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp CEEEEEEECCCCBSTTCGG--------GGG--------SSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccEEEEeCCCcccccchh--------hhh--------hhHHHHHHHHHhcCCCceEEEec
Confidence 8999998753 3221111 001 13578999999999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.06 E-value=5.6e-10 Score=86.62 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=70.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc----cCCCceEEEEeCCHHHHHHHHHHHH--------------Hc----CCc--
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQ----EVPGVQYIATDINPYAVEVTRKTLE--------------AH----NVH-- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~----~~~~~~v~giD~~~~~i~~a~~~~~--------------~~----~~~-- 96 (256)
.+..+|+++|||||.-+..++..+.+ .....+|+|+|+++.+++.|++... .. +..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 46789999999999866656554432 2235689999999999999975321 10 000
Q ss_pred c------------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025180 97 A------------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 97 ~------------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
. .+...+..... ....+.||+|+|--.+...+ ......+++.+++.|+
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~fDvI~CRNVLiYf~-------------------~~~~~~vl~~l~~~L~ 162 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYFD-------------------KTTQEDILRRFVPLLK 162 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGSC-------------------HHHHHHHHHHHGGGEE
T ss_pred ceeehHHHHHHHHHHhhhhccccc-cCCCCCccEEEeehhHHhcC-------------------HHHHHHHHHHHHHHhC
Confidence 0 12222222221 11247899999943332221 1236789999999999
Q ss_pred cCeEEEE
Q 025180 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
|||.+++
T Consensus 163 pGG~L~l 169 (193)
T d1af7a2 163 PDGLLFA 169 (193)
T ss_dssp EEEEEEE
T ss_pred CCcEEEE
Confidence 9999887
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=1.1e-09 Score=90.18 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|.|.|..+.++++. .+..+|+++|+++++++.|++.+..+. . ..+++.+|+...+.. .+++
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~----~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~ 162 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKH----DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNE 162 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS----TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSC
T ss_pred CCCceEEEecCCchHHHHHHHhc----CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-CCCC
Confidence 46799999999999975444432 455689999999999999999776532 2 238999999998765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
||+|+++.+-...... ..+ ....+++.+.+.|+|||++++-..+
T Consensus 163 yDvIi~D~~dp~~~~~--------~~L--------~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQG--------GHL--------FTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEEEEC------------------C--------CSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCEEEEcCCCCCcCch--------hhh--------ccHHHHHHHHhhcCCCcEEEEecCC
Confidence 9999998642111000 001 1368899999999999999985543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.02 E-value=2.3e-09 Score=88.11 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-..++++|++++.++.+++.+..+. ...+++.+|....+....+++
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~----~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARH----ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCcceEEecCCchHHHHHHHhc----ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 46789999999999975444332 454589999999999999999765432 223899999998876544568
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHH---HHHHHHHHcCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPS---QICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~---~~~~~~~~~g~ 191 (256)
||+|+.+.+-. ... ...+ ....+++.+.+.|+|||++++-..+.. ..+ .+.+.+.+...
T Consensus 155 yDvIi~D~~dp-~~~--------~~~L--------~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~ 217 (290)
T d1xj5a_ 155 YDAVIVDSSDP-IGP--------AKEL--------FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK 217 (290)
T ss_dssp EEEEEECCCCT-TSG--------GGGG--------GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred ccEEEEcCCCC-CCc--------chhh--------CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcc
Confidence 99999986421 110 0111 246889999999999999998654432 222 33444445443
Q ss_pred cE
Q 025180 192 AA 193 (256)
Q Consensus 192 ~~ 193 (256)
..
T Consensus 218 ~~ 219 (290)
T d1xj5a_ 218 GS 219 (290)
T ss_dssp SC
T ss_pred cc
Confidence 33
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.00 E-value=8e-10 Score=88.23 Aligned_cols=90 Identities=19% Similarity=0.147 Sum_probs=68.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
-+++.+++... ..++++|||+|||+|.+|..++.. +..|+++|+++.+++.++++...+ ....++++|+.
T Consensus 8 ~i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~~~-~n~~i~~~D~l 77 (235)
T d1qama_ 8 HNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDIL 77 (235)
T ss_dssp HHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGG
T ss_pred HHHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhhcc-cchhhhhhhhh
Confidence 34555666543 258999999999999999988876 348999999999999998875422 23399999999
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ ......|++|.||+.
T Consensus 78 ~~~~~--~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 78 QFKFP--KNQSYKIFGNIPYNI 97 (235)
T ss_dssp GCCCC--SSCCCEEEEECCGGG
T ss_pred hcccc--ccccceeeeeehhhh
Confidence 87432 234567899999963
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.3e-09 Score=87.80 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=81.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+..+++++|+++++++.|++.+..+. ...+++.+|+...+.. .+++
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~----~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~ 151 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKH----PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDA 151 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSC
T ss_pred cCcCeEEEeCCCchHHHHHHHHc----CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCC
Confidence 46799999999999975444332 455699999999999999999775431 1238999999988765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+++.+-. .... ..-....+++.+.+.|+|||++++-..+.
T Consensus 152 yDvIi~D~~~p-~~~~----------------~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 152 FDVIITDSSDP-MGPA----------------ESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEEEEECC----------------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCEEEEcCCCC-CCcc----------------cccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 99999986321 1100 01124588999999999999999865443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.99 E-value=2.8e-09 Score=87.03 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=88.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----------CcceEEEcchhhchh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----------VHADLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----------~~~~~~~~d~~~~~~ 109 (256)
..+++||-+|+|.|..+.++.+ ++..+|+++|+++++++.|++.+..+. ...+++.+|+...+.
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-----~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-----HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-----SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHH-----hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 5779999999999997544432 344589999999999999998653321 123899999998875
Q ss_pred hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCHHHHH---HH
Q 025180 110 KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDPSQIC---LQ 185 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~---~~ 185 (256)
. .++||+|+++.+-...+.. . -...++++.+.+.|+|||++++-..+. .....+. +.
T Consensus 146 ~--~~~yDvIi~D~~~~~~~~~---------~--------L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~t 206 (276)
T d1mjfa_ 146 N--NRGFDVIIADSTDPVGPAK---------V--------LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKE 206 (276)
T ss_dssp H--CCCEEEEEEECCCCC----------------------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHH
T ss_pred c--cCCCCEEEEeCCCCCCCcc---------c--------ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHH
Confidence 4 5789999998753211110 0 013588999999999999998855332 2333333 33
Q ss_pred HHHcCCcEEEEE
Q 025180 186 MMEKGYAARIVV 197 (256)
Q Consensus 186 ~~~~g~~~~~~~ 197 (256)
+.+. |.....+
T Consensus 207 l~~~-F~~v~~y 217 (276)
T d1mjfa_ 207 MKKV-FDRVYYY 217 (276)
T ss_dssp HHHH-CSEEEEE
T ss_pred HHhh-CCeeEEE
Confidence 4443 5554444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=6.2e-09 Score=84.80 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=91.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+..+|+.+|++++.++.|++.+..+. . ..+++.+|....+.. .+.+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~----~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~ 148 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH----PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQ 148 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC----TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSC
T ss_pred CCcceEEecCCCCcHHHHHHHhc----CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-cCCC
Confidence 46799999999999975444432 445699999999999999999875432 2 228999999988765 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-CCHHH---HHHHHHHcCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-NDPSQ---ICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~---~~~~~~~~g~ 191 (256)
||+|+.+++-..... . .+ ....+.+.+.+.|+|||+++.-..+. ...+. +.+.+++. |
T Consensus 149 yDvIi~D~~~p~~~~-~--------~L--------~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F 210 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPA-V--------NL--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-F 210 (274)
T ss_dssp EEEEEESCSSCCSCC-C--------CC--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-C
T ss_pred CCEEEEcCCCCCCcc-h--------hh--------ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-c
Confidence 999999875211111 0 01 13588999999999999999854332 23333 33334333 5
Q ss_pred cEEEEEe
Q 025180 192 AARIVVQ 198 (256)
Q Consensus 192 ~~~~~~~ 198 (256)
.....+.
T Consensus 211 ~~v~~y~ 217 (274)
T d1iy9a_ 211 PITKLYT 217 (274)
T ss_dssp SEEEEEE
T ss_pred CceEEEE
Confidence 5555443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.95 E-value=2.3e-09 Score=88.56 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||-+|-|.|..+.++.+. .+-.+|+.+|+++++++.|++.+..+. . ..+++.+|....+.. .+.+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~----~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~ 179 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKH----ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNE 179 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC----TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTC
T ss_pred CCCCeEEEeCCCchHHHHHHHHc----CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCC
Confidence 46789999999999975544432 444589999999999999998765432 1 228999999998765 4678
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
||+||++.+-...+. ..-....+++.+.+.|+|||+++.-..+
T Consensus 180 yDvII~D~~dp~~~~-----------------~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 180 FDVIITDSSDPVGPA-----------------ESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EEEEEECCC------------------------------HHHHHHHHEEEEEEEEEECCC
T ss_pred CCEEEEcCCCCCCcc-----------------hhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 999999865211100 0112568899999999999999985543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=7.7e-09 Score=82.92 Aligned_cols=133 Identities=16% Similarity=0.150 Sum_probs=90.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|||+|.+++.+++. +|+.+++++|+.+. ++.+.. .....+..+|+.+..+ ..|+++.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dlp~v-i~~~~~-----~~r~~~~~~d~~~~~P-----~ad~~~l 145 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSK----YPTIKGINFDLPHV-IEDAPS-----YPGVEHVGGDMFVSIP-----KADAVFM 145 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHH----CTTSEEEEEECTTT-TTTCCC-----CTTEEEEECCTTTCCC-----CCSCEEC
T ss_pred CCcEEEEecCCCcHHHHHHHHH----CCCCeEEEcccHHh-hhhccc-----CCceEEecccccccCC-----CcceEEE
Confidence 4579999999999998888887 99999999998543 322111 1123888889876532 2355555
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------------------------
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------------------------- 176 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------- 176 (256)
.--.+..++ .....+|+++.+.|+|||+++++....
T Consensus 146 ~~vlh~~~d-------------------~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~ 206 (243)
T d1kyza2 146 KWICHDWSD-------------------EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNP 206 (243)
T ss_dssp SSSSTTSCH-------------------HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCS
T ss_pred EEEeecCCH-------------------HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCC
Confidence 333332222 235789999999999999998865210
Q ss_pred ----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025180 177 ----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
+..++..+++++.||+...++.... ...++++
T Consensus 207 ~g~ert~~e~~~ll~~AGf~~vkv~~~~~---~~~viE~ 242 (243)
T d1kyza2 207 GGKERTQKEFEDLAKGAGFQGFKVHCNAF---NTYIMEF 242 (243)
T ss_dssp SCCCEEHHHHHHHHHHHCCSCEEEEEEET---TEEEEEE
T ss_pred CCCcCCHHHHHHHHHHcCCCcEEEEEeCC---CCEEEEe
Confidence 0245788899999999887765533 3355554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=9.6e-09 Score=82.36 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=93.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|||+|.+++.+++. +|+.+++..|. |..++.+.. .-..+++.+|+.+.. ..+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~~~~-----~~rv~~~~gD~f~~~-----p~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFTSI-----PNADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTTCC-----CCCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHh----CCCCeEEEecC-HHHHHhCcc-----cCceEEEecCcccCC-----CCCcEEEE
Confidence 4578999999999998888877 99999999998 444443211 112389999987742 25799998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeC---C-------------------
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLT---A------------------- 176 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~---~------------------- 176 (256)
.-.++..+++ ....+|+++++.|+|| |+++++... .
T Consensus 145 ~~vLHdw~d~-------------------~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~ 205 (244)
T d1fp2a2 145 KYILHNWTDK-------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC 205 (244)
T ss_dssp ESCGGGSCHH-------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG
T ss_pred EeecccCChH-------------------HHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh
Confidence 6555444332 2568999999999999 777765421 0
Q ss_pred -----CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025180 177 -----NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
+..++..+++++.||+...+.+... ...+++.
T Consensus 206 ~~G~ert~~e~~~ll~~AGf~~~~i~~~~~---~~svIE~ 242 (244)
T d1fp2a2 206 LNGKERNEEEWKKLFIEAGFQHYKISPLTG---FLSLIEI 242 (244)
T ss_dssp GTCCCEEHHHHHHHHHHTTCCEEEEEEEET---TEEEEEE
T ss_pred CCCcCCCHHHHHHHHHHcCCceEEEEECCC---CeEEEEE
Confidence 1245788899999999887766543 3455554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=2e-09 Score=82.40 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=90.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---hhcCCCc
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---KRLAGLV 116 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~f 116 (256)
..++..++|..+|.|..+..+.+. +++|+|+|.++.+++.+++. ..-...+++.++.+... ....+++
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCCcc
Confidence 368999999999999987666543 45999999999999988763 12123777777655432 2334679
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCC
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~ 191 (256)
|.|+.+..+... .+....++.......|....++|++||+++++.........+.+.+++.++
T Consensus 87 dgIl~DLGvSs~------------qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~ 149 (182)
T d1wg8a2 87 DGILADLGVSSF------------HLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGL 149 (182)
T ss_dssp EEEEEECSCCHH------------HHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred CEEEEEccCCHH------------HhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccc
Confidence 999998654211 011122345567788999999999999999877543333346666666554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=1.5e-08 Score=85.99 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=79.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc----------------eEEEcchh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA----------------DLINTDIA 105 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----------------~~~~~d~~ 105 (256)
++.+|||..||||..++-.++.+ +...|++.|+|+.+++.+++|+..|+... .+.+.|+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~----~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET----PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS----SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC----CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 67899999999999998776663 33489999999999999999999997642 45566665
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+.. ....||+|..+| |.. ...+++.+.+.++.||.+.+..
T Consensus 121 ~~~~~-~~~~fDvIDiDP-fGs------------------------~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 121 RLMAE-RHRYFHFIDLDP-FGS------------------------PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHHHH-STTCEEEEEECC-SSC------------------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHh-hcCcCCcccCCC-CCC------------------------cHHHHHHHHHHhccCCEEEEEe
Confidence 55433 246799999996 431 2467888888999999999854
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.2e-08 Score=81.47 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcc
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d 103 (256)
-+++.+.+... ..++..|||+|+|+|.+|..+++. +..++++|+++.+++..++.+..+... .+++.+|
T Consensus 8 ~i~~kIv~~~~---~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D 78 (278)
T d1zq9a1 8 LIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGD 78 (278)
T ss_dssp HHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC
T ss_pred HHHHHHHHHhC---CCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHH
Confidence 34556655543 257899999999999999988876 348999999999999999887655442 2899999
Q ss_pred hhhchhhhcCCCccEEEECCCCC
Q 025180 104 IASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
+..... ..++.||+|.||+
T Consensus 79 ~l~~~~----~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 79 VLKTDL----PFFDTCVANLPYQ 97 (278)
T ss_dssp TTTSCC----CCCSEEEEECCGG
T ss_pred Hhhhhh----hhhhhhhcchHHH
Confidence 987632 3467899999996
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.80 E-value=1.3e-10 Score=93.41 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=67.4
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025180 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+++.+. ..++.+|||||||+|.+|..+++. +..|+|+|+++.+++.++++.... ...+++++|+.+.
T Consensus 18 i~kIv~~~~---~~~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 18 LNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQF 87 (245)
T ss_dssp HHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTT
T ss_pred HHHHHHhcC---CCCCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhhhc-cchhhhhhhhhcc
Confidence 455555543 257899999999999999888876 348999999999998877654321 1338999999886
Q ss_pred hhhhcCCCccEEEECCCCCCC
Q 025180 108 LEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~ 128 (256)
. +....++.|++|.||+..
T Consensus 88 ~--~~~~~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 88 Q--FPNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp T--CCCSSEEEEEEECCSSSC
T ss_pred c--cccceeeeEeeeeehhhh
Confidence 3 334677889999999754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=1.9e-07 Score=71.07 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh------hhcC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE------KRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~------~~~~ 113 (256)
+++.+|||+||+.|.++..+.+.+. ....++++|+.+- ..++. .++++|+.+... ....
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~---~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHC---TTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEeccCCcceEEEEeecc---ccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccC
Confidence 5789999999999999988887654 3468999998762 12333 788888765432 1234
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.++|+|+++.....+..... +.....+.....+..+.++|++||.+++-........++...+....-++
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~----------d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V 156 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAV----------DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKV 156 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHH----------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEE
T ss_pred cceeEEEecccchhcccchh----------HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEE
Confidence 67999999865443322110 00011224456677788999999999997665555666777766543233
Q ss_pred EEEEecC
Q 025180 194 RIVVQRS 200 (256)
Q Consensus 194 ~~~~~~~ 200 (256)
..+.+..
T Consensus 157 ~~~KP~a 163 (180)
T d1ej0a_ 157 KVRKPDS 163 (180)
T ss_dssp EEECCTT
T ss_pred EEECCCC
Confidence 4444443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=3.1e-08 Score=79.51 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025180 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+.+.+. ..+++.|||+|||+|.+|..+++. +.+++++|+++.+++.+++..... ...+++++|+.
T Consensus 8 ~~~~~Iv~~~~---~~~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~~-~~~~ii~~D~l 77 (252)
T d1qyra_ 8 FVIDSIVSAIN---PQKGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHC---CCTTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGG
T ss_pred HHHHHHHHhcC---CCCCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHHHhhhc-cchhHHhhhhh
Confidence 34555666553 257899999999999999887764 348999999999999887643222 13389999998
Q ss_pred hchhhhc---CCCccEEEECCCCCC
Q 025180 106 SGLEKRL---AGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~---~~~fD~Ii~npP~~~ 127 (256)
+...... .+..-.|++|.||+.
T Consensus 78 ~~~~~~~~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 78 TFNFGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred hhcccccccccCCCeEEEecchHHH
Confidence 7633211 123347889999974
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.35 E-value=1.4e-06 Score=69.21 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------cceEEEcchhhchhhh
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------HADLINTDIASGLEKR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------~~~~~~~d~~~~~~~~ 111 (256)
...+|||.-||.|..++.++.. +++|+++|-++......++++.+... ..+++++|..+.+...
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~ 161 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred CCCEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc
Confidence 3458999999999999999887 46899999999998888887765321 1289999998887653
Q ss_pred cCCCccEEEECCCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~ 129 (256)
..+||+|+.+|+|-...
T Consensus 162 -~~~~DvIYlDPMFp~~~ 178 (250)
T d2oyra1 162 -TPRPQVVYLDPMFPHKQ 178 (250)
T ss_dssp -SSCCSEEEECCCCCCCC
T ss_pred -CCCCCEEEECCCCcccc
Confidence 56799999999996543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.31 E-value=7e-07 Score=70.48 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~I 119 (256)
++++|||+|++.|.-++.++..+....++++++++|+++......... .-..+++++|..+.. .......+|+|
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~----~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc----ccceeeeecccccHHHHHHHHhcCCCEE
Confidence 689999999999998887777665445678999999987654322111 112378888865432 22334568988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+.+--+. .......+ ....+|++||++++
T Consensus 156 fID~~H~---------------------~~~v~~~~--~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 156 FIDNAHA---------------------NTFNIMKW--AVDHLLEEGDYFII 184 (232)
T ss_dssp EEESSCS---------------------SHHHHHHH--HHHHTCCTTCEEEE
T ss_pred EEcCCcc---------------------hHHHHHHH--HHhcccCcCCEEEE
Confidence 8853211 01112222 24579999999998
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=98.02 E-value=8.1e-06 Score=64.73 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=60.8
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+...+++++|+|+++|||......-.. ...... =...+...+.++.++|+|+|.+++... ..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~-~~~~~~------y~~~~~~~~~e~~rvLk~~g~~~~~~~-~~ 77 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDS-FDSHNE------FLAFTYRWIDKVLDKLDKDGSLYIFNT-PF 77 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGC-CSSHHH------HHHHHHHHHHHHHHHEEEEEEEEEEEC-HH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcC-CCCHHH------HHHHHHHHHHHhhhccccCcccccccC-ch
Confidence 7999999999888778999999999999754321100 000000 012355678899999999999887443 22
Q ss_pred CHHHHHHHHHHcCCcEE
Q 025180 178 DPSQICLQMMEKGYAAR 194 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~ 194 (256)
....+...+.+.||...
T Consensus 78 ~~~~~~~~~~~~g~~~~ 94 (256)
T d1g60a_ 78 NCAFICQYLVSKGMIFQ 94 (256)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred hhhhhhhhhhcccceee
Confidence 34456677888888754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.69 E-value=0.00012 Score=58.45 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=59.9
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA- 176 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~- 176 (256)
-++.+|..+.+..+.++++|+|+++|||...-.. +.....-.+.+...+.++.++|||+|.+++.....
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~----------~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~ 75 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD----------WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY 75 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG----------GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCccc----------ccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccc
Confidence 5778999999888888999999999999753221 11111223456788899999999999999854321
Q ss_pred -------CCHHHHHHHHHHcCCcEE
Q 025180 177 -------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 177 -------~~~~~~~~~~~~~g~~~~ 194 (256)
.....+...+...+|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (279)
T d1eg2a_ 76 QGEAGSGDLISIISHMRQNSKMLLA 100 (279)
T ss_dssp CCCTTBCCHHHHHHHHHHHCCCEEE
T ss_pred cccccccchhhHHHHHHhccCceee
Confidence 112344555667777653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.63 E-value=0.0023 Score=51.66 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=90.3
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+.+.+.+. +-+ .+.++|+++.+.+..+.|. +..++.+|+.+..... -..+|+++..||
T Consensus 2 k~~~lF~G~Gg~~~gl~~a----G~~-~~~a~e~d~~a~~~~~~N~-----~~~~~~~Di~~~~~~~-~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA----GFR-IICANEYDKSIWKTYESNH-----SAKLIKGDISKISSDE-FPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH----TCE-EEEEEECCHHHHHHHHHHC-----CSEEEESCTTTSCGGG-SCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHC----CCE-EEEEEeCCHHHHHHHHHHC-----CCCCccCChhhCCHhH-cccccEEeeccc
Confidence 6999999999988766554 222 4679999999998877774 3477889988874432 246899999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEEEEe
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 198 (256)
-...+........ .++.+ .....+++ +...++|.-+++=..+... ....+...+...||.+.....
T Consensus 71 Cq~fS~ag~~~g~------~d~r~-~l~~~~~~-~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vl 142 (324)
T d1dcta_ 71 CQSWSEGGSLRGI------DDPRG-KLFYEYIR-ILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILL 142 (324)
T ss_dssp CTTTSSSSCCCCS------SSHHH-HHHHHHHH-HHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccccccc------ccccc-chHHHHHH-HHHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeee
Confidence 8766553321100 00111 12233333 4556788644443222221 123445555666776544332
Q ss_pred ------cCCCCccEEEEEEEec
Q 025180 199 ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 199 ------~~~~~~~~~l~~~~~~ 214 (256)
..+..++++++..+++
T Consensus 143 na~~~GvPQ~R~R~fiv~~r~~ 164 (324)
T d1dcta_ 143 NANDYGVAQDRKRVFYIGFRKE 164 (324)
T ss_dssp EGGGGTCSBCCEEEEEEEEEGG
T ss_pred ecccccCchhhceeeEeeecCC
Confidence 2345677777776654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.60 E-value=0.0001 Score=58.10 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... +.++..|||+.||+|+.++++.+. +-..+|+|++++.++.|++++.
T Consensus 198 P~~L~~~lI~~~----s~~gd~VlDpF~GSGTT~~aa~~~------~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRAS----SNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHH----CCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh----CCCCCEEEECCCCchHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHc
Confidence 356677776665 468999999999999988766654 3489999999999999999875
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.56 E-value=0.0019 Score=52.54 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=90.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+.+|||+.||.|.+...+.+. +-+ .+.++|+++.+++..+.|.. ...++|+.+..... -..+|+++.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a----G~~-~v~a~e~d~~a~~~~~~N~~------~~~~~Di~~~~~~~-~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC----GAE-CVYSNEWDKYAQEVYEMNFG------EKPEGDITQVNEKT-IPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TCE-EEEEECCCHHHHHHHHHHHS------CCCBSCGGGSCGGG-SCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC----CCe-EEEEEeCCHHHHHHHHHHCC------CCCcCchhcCchhh-cceeeeeec
Confidence 5789999999999988776554 222 47889999999999888863 23357777764332 246999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCcEEE
Q 025180 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~~~~ 195 (256)
.||.-..+....... .. +..+ .....+++ +.+.++|.=.++=..+... ....+...+++.||....
T Consensus 78 gpPCq~fS~ag~~~g-----~~-d~r~-~l~~~~~~-~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~ 149 (327)
T d2c7pa1 78 GFPCQAFSISGKQKG-----FE-DSRG-TLFFDIAR-IVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp ECCCTTTCTTSCCCG-----GG-STTS-CHHHHHHH-HHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred ccccchhhhhhhhcC-----Cc-ccch-hHHHHHHH-HHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCccee
Confidence 999876655432110 11 1111 12334443 3456788643332222211 124567788888887543
Q ss_pred EEe------cCCCCccEEEEEEEec
Q 025180 196 VVQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 196 ~~~------~~~~~~~~~l~~~~~~ 214 (256)
... ..+...+++++..+++
T Consensus 150 ~vl~a~~~GvPQ~R~R~fivg~r~~ 174 (327)
T d2c7pa1 150 KVLNALDYGIPQKRERIYMICFRND 174 (327)
T ss_dssp EEEEGGGGTCSBCCEEEEEEEEBGG
T ss_pred eEecHHHcCCCchhhhheeeeeccC
Confidence 221 1234566666655543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.00017 Score=59.27 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcc---cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Q 025180 25 FALVDALLADRIN---LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~---~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~ 101 (256)
.-+++.+++.+.- ....++..|||+|.|.|.+|..+....+ + -+++++|+++..++..++... +-+..+++
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~---~-~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~ 96 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC---P-RQYSLLEKRSSLYKFLNAKFE--GSPLQILK 96 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC---C-SEEEEECCCHHHHHHHHHHTT--TSSCEEEC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC---C-CEEEEEECCHHHHHHHHHhcc--CCCcEEEe
Confidence 4566666665431 1123578999999999999988887632 2 279999999999998887643 22348888
Q ss_pred cchhhc
Q 025180 102 TDIASG 107 (256)
Q Consensus 102 ~d~~~~ 107 (256)
+|+...
T Consensus 97 ~D~l~~ 102 (322)
T d1i4wa_ 97 RDPYDW 102 (322)
T ss_dssp SCTTCH
T ss_pred Cchhhc
Confidence 888754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.51 E-value=6.4e-05 Score=61.20 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...|++.++... ..++..|||+.||+|+.++++.++ +-..+|+|++++.++.|++++...
T Consensus 236 P~~L~~rlI~~~----s~~gdiVlDpF~GSGTT~~AA~~l------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 236 PAKLPEFFIRML----TEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTHHHHHHHHHH----CCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred chHHHHHhhhhc----ccCCCEEEecCCCCcHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 456777777655 468999999999999988776665 348999999999999999887543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0013 Score=53.76 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=85.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhc-CCCccEEE
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRL-AGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~fD~Ii 120 (256)
+.+|+|+.||.|.+...+... +-+. -+.++|+++.+++..+.|.. ...++.+|+.+...... ...+|+++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a----G~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc----CCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHhHcCCCCccEEE
Confidence 568999999999987665544 2222 37899999999988777642 23677788876643322 24699999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc--ccCeEEEEEEeCCC-----CHHHHHHHHHHcCCcE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL--SKRGWLYLVTLTAN-----DPSQICLQMMEKGYAA 193 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L--kpgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~ 193 (256)
..||--..+....... . .++.+ .....+++-+. .+ +|.- ++++.... ..+.+.+.|++.||.+
T Consensus 74 ggpPCq~fS~ag~~~~-----~-~d~r~-~l~~~~~~~i~-~~~~kPk~--~i~ENV~~l~~~~~~~~i~~~l~~~GY~v 143 (343)
T d1g55a_ 74 MSPPCQPFTRIGRQGD-----M-TDSRT-NSFLHILDILP-RLQKLPKY--ILLENVKGFEVSSTRDLLIQTIENCGFQY 143 (343)
T ss_dssp ECCC-------------------------CHHHHHHHHGG-GCSSCCSE--EEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred eecccccccccccccc-----c-ccccc-cccchhhhhHh-hhcCCCce--eeeeccCCcccchhhHHHHhhhhcccccc
Confidence 9999766554321100 0 01111 11233333333 23 5753 33343222 2356778888899876
Q ss_pred EEEEec------CCCCccEEEEEEEecC
Q 025180 194 RIVVQR------STEEENLHIIKFWRDF 215 (256)
Q Consensus 194 ~~~~~~------~~~~~~~~l~~~~~~~ 215 (256)
...... .+...+++++..+++.
T Consensus 144 ~~~vlna~dyGvPQ~R~Rvfivg~r~~~ 171 (343)
T d1g55a_ 144 QEFLLSPTSLGIPNSRLRYFLIAKLQSE 171 (343)
T ss_dssp EEEEECGGGGTCSCCCCEEEEEEEESSS
T ss_pred ceeeeeccccCCcccceeEEEEEEeCCc
Confidence 543322 2456777777666543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.48 E-value=0.00011 Score=59.72 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=50.1
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.++++|..+.+....++++|+|+.+|||....+....... .. .-.+.+...+.+++++|+++|.+++..
T Consensus 14 ~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~-~~------~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 14 SMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLE-QH------EYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCH-HH------HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCC-HH------HHHHHHHHHHHHHHHhCcccCcccccc
Confidence 8999999999888888999999999999754332110000 00 012245677899999999999999854
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.47 E-value=0.00012 Score=57.28 Aligned_cols=108 Identities=10% Similarity=0.009 Sum_probs=59.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
++..+|+|+|||.|.++..++.. .+...+.|+++--..-+. ......++.+. .+...+-.. ...++..|+|
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~----~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~---~l~~~~~D~v 136 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVF---FIPPERCDTL 136 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTT---TSCCCCCSEE
T ss_pred cCCCeEEEecCCCChHHHHHHhh----cCCCceeEEEecCccccC-CccccccccccccchhhhhHH---hcCCCcCCEE
Confidence 57789999999999998776654 333467777773211000 00001111122 333222211 2235789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+|+.-=. .+..+ .+ .....++++.+.+.|+|||.+++
T Consensus 137 lcDm~es-s~~~~-----vd---------~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 137 LCDIGES-SPNPT-----VE---------AGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp EECCCCC-CSSHH-----HH---------HHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EeeCCCC-CCCch-----hh---------hhhHHHHHHHHHHHcccCCEEEE
Confidence 9985211 11111 11 11133667888899999998776
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.46 E-value=9.9e-05 Score=54.71 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-------hhhchhhhc
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-------IASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-------~~~~~~~~~ 112 (256)
+++.+||=+||| .|.+++.+++. .+++|+++|.+++.++.|++. +....+...+ ..+......
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~-----~Ga~vi~v~~~~~r~~~a~~~----ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKA-----YGAFVVCTARSPRRLEVAKNC----GADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHHHT----TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCEEEEEcccccchhhHhhHhh-----hcccccccchHHHHHHHHHHc----CCcEEEeccccccccchhhhhhhccc
Confidence 688999999877 34444444433 357999999999999988763 3222221111 111111222
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...+|+|+-... ....+..+.++|+++|+++++..
T Consensus 96 g~g~D~vid~~g---------------------------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 96 GDLPNVTIDCSG---------------------------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SSCCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCceeeecCC---------------------------ChHHHHHHHHHHhcCCceEEEec
Confidence 356899987422 24567888889999999998654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.46 E-value=0.00022 Score=56.75 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=51.1
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025180 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
|..=...|++.++... +.++..|||+.||+|..++++.++ +-+.+|+|++++.++.|++++...
T Consensus 189 p~~kP~~L~~~~I~~~----s~~gdiVLDpF~GSGTT~~Aa~~l------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 189 PTQKPAAVIERLVRAL----SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp TTCCCHHHHHHHHHHH----SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHhh----cCCCCEEEecCCCCcHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3333466777777665 468999999999999988877665 338999999999999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.38 E-value=0.00017 Score=53.90 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=62.2
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhhc-CCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~-~~~ 115 (256)
+++.+||=+|||. |..++.+++.++ . .+|+++|.+++..+.+++. |.. .++ ..+..+...+.. ...
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~G---a-~~Vi~~d~~~~r~~~a~~l----Ga~-~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRG---A-GRIIGVGSRPICVEAAKFY----GAT-DILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT---C-SCEEEECCCHHHHHHHHHH----TCS-EEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCCEEEEEcCCcchhhhhhhhhccc---c-cccccccchhhhHHHHHhh----Ccc-ccccccchhHHHHHHHHhhccC
Confidence 6788999898875 566555555421 1 2799999999998888753 332 222 122222222222 245
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.-. ....++.+.++++|+|+++++.
T Consensus 97 ~D~vid~~g---------------------------~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 97 VDRVIMAGG---------------------------GSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred cceEEEccC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 999987432 1245777788999999999854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.28 E-value=0.00056 Score=50.77 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
+++.+||=+|||.- ...+.+++.+ + ...|+++|.+++.++.+++. |.. .++.. |..+......++.+
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~---g-~~~v~~~~~~~~k~~~a~~~----Ga~-~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVC---G-ASIIIAVDIVESRLELAKQL----GAT-HVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTSCE
T ss_pred CCCCEEEEeCCCHHHhhhhhccccc---c-cceeeeeccHHHHHHHHHHc----CCe-EEEeCCCcCHHHHHHHHcCCCC
Confidence 68899999988632 2333333332 2 33788999999998888763 433 33322 33333333445689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. ....++.+.++++++|+++++.
T Consensus 98 D~vid~~G---------------------------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 98 NFALESTG---------------------------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp EEEEECSC---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred cEEEEcCC---------------------------cHHHHHHHHhcccCceEEEEEe
Confidence 99987422 2466888899999999999854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=0.00062 Score=50.18 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~ 118 (256)
+++.+|+-+|+| .|..++.+++. .+++++++|.+++.++.+++. |.+ .++.. +-.+.. ....+.+|+
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~-----~G~~vi~~~~~~~k~~~a~~l----Ga~-~~i~~~~~~~~~-~~~~~~~d~ 94 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA-----MGAETYVISRSSRKREDAMKM----GAD-HYIATLEEGDWG-EKYFDTFDL 94 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH-----HTCEEEEEESSSTTHHHHHHH----TCS-EEEEGGGTSCHH-HHSCSCEEE
T ss_pred CCCCEEEEECCCCcchhHHHHhhh-----ccccccccccchhHHHHhhcc----CCc-EEeeccchHHHH-Hhhhcccce
Confidence 689999999987 45555555544 257999999999988887653 433 23222 211221 223467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..-.-. ....+..+.++|+++|+++++.
T Consensus 95 vi~~~~~~-------------------------~~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 95 IVVCASSL-------------------------TDIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEECCSCS-------------------------TTCCTTTGGGGEEEEEEEEECC
T ss_pred EEEEecCC-------------------------ccchHHHHHHHhhccceEEEec
Confidence 88732100 0011445678999999999854
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.22 E-value=0.00085 Score=50.82 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCCc
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~f 116 (256)
+++.+||-+|||. |..+..+++. .....|+++|.+++.++.|++. |.+. .....|+.+...+.. ...+
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~----~ga~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARL----LGAAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh----hcccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 6899999999987 5555555554 2345899999999999988764 3321 111223333322222 3468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++-.-..-.... ......+.. ....++.+.+.++|+|++.++-
T Consensus 96 D~vid~vG~~~~~~-------~~~~~~~~~-----~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGH-------GHEGAKHEA-----PATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCS-------STTGGGSBC-----TTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCC-------cccceeecC-----cHHHHHHHHHHHhcCCEEEEee
Confidence 99986422110000 000000000 2367899999999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00021 Score=53.58 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhc---hhhh-
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASG---LEKR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~---~~~~- 111 (256)
+++.+||-+|+|. |...+.+++.+ ++ +|+++|.+++.++.+++. |.+ .++. .+..+. ..+.
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~-----Ga~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSL-----GAENVIVIAGSPNRLKLAEEI----GAD-LTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHT-----TBSEEEEEESCHHHHHHHHHT----TCS-EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCccchhheeccccc-----ccccccccccccccccccccc----cce-EEEeccccchHHHHHHHHHhh
Confidence 5789999998873 45555555542 33 899999999999988653 332 2221 122221 1111
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....++.+.+.|++||+++++.
T Consensus 97 ~~~g~Dvvid~vG---------------------------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILEATG---------------------------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEECSS---------------------------CTTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEeecCC---------------------------chhHHHHHHHHhcCCCEEEEEe
Confidence 1345999986321 1244677788999999998754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00094 Score=49.42 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=63.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhh-cCC
Q 025180 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~-~~~ 114 (256)
+++.+||-.|+ |.|..++.+++. -++++++++.+++..+.+++ .|.+ .++. .|+.+..... ...
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~-----~G~~vi~~~~~~~~~~~~~~----~Ga~-~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARA-----YGLKILGTAGTEEGQKIVLQ----NGAH-EVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHH----TTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEeccccccccccccccc-----cCcccccccccccccccccc----cCcc-cccccccccHHHHhhhhhccC
Confidence 58899999996 455666666665 25789999999887777654 4543 2322 2333332222 245
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+... -...++...++|+++|+++.+-
T Consensus 97 g~d~v~d~~----------------------------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 97 GIDIIIEML----------------------------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp CEEEEEESC----------------------------HHHHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecc----------------------------cHHHHHHHHhccCCCCEEEEEe
Confidence 699998741 1345777888999999999853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00061 Score=50.36 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=61.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhc---hhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASG---LEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~---~~~~~~~ 114 (256)
+++.+|+=+|||... +.+++.+...+ ..+|+++|.+++.++.|++. |.+. ++.. +..+. .......
T Consensus 25 ~~gd~VlI~G~G~iG--~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~-~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIG--MVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADL-VLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp CTTCEEEEECCSHHH--HHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSE-EEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCccH--HHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCcc-cccccccccccccccccccCCC
Confidence 678999999886433 33333333222 23899999999999988753 4332 2221 21111 1111235
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+|+|+..-. ....++...+++++||+++++..
T Consensus 97 g~Dvvid~~G---------------------------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 97 KPEVTIECTG---------------------------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CCSEEEECSC---------------------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CceEEEeccC---------------------------CchhHHHHHHHhcCCCEEEEEec
Confidence 7899987422 24678888999999999998654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.03 E-value=0.00052 Score=51.09 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---c--hhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---D--IASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d--~~~~~~~~~~~ 114 (256)
+++.+|+=+|||. |..++.+++.++ ...|+++|.+++..+.|++. |.. .++.. | ..........+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~G----a~~Vi~~d~~~~r~~~a~~~----Ga~-~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAG----ASRIIAIDINGEKFPKAKAL----GAT-DCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHT----TCS-EEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhC----CceeeeeccchHHHHHHHHh----CCC-cccCCccchhhhhhhHhhhhcC
Confidence 6889999999987 777777777642 23799999999988887763 333 22221 1 11111122246
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-.-. ....+..+.+.+++| |+++++-.
T Consensus 98 G~d~vie~~G---------------------------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCAG---------------------------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESSC---------------------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEecc---------------------------cchHHHHHHHHhhcCCeEEEecCC
Confidence 7999987421 256788899999996 99998643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.77 E-value=0.0022 Score=46.80 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~fD 117 (256)
+++.+|+=+|+|. +++.+.+.++. .+++|+++|.+++.++.+++ .|.+ .++.. |..+.......+.+|
T Consensus 26 ~~g~~VlV~GaG~--vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~----~Ga~-~~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 26 RPGQWVAISGIGG--LGHVAVQYARA--MGLHVAAIDIDDAKLELARK----LGAS-LTVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp CTTCEEEEECCSH--HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTCS-EEEETTTSCHHHHHHHHHSSEEE
T ss_pred CCCCEEEEeeccc--cHHHHHHHHHH--cCCccceecchhhHHHhhhc----cCcc-ccccccchhHHHHHHHhhcCCcc
Confidence 6788999988753 44444443332 25799999999999888765 3433 23322 222222222223344
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.|++.. -...+..+.++|+++|+++++.
T Consensus 97 ~i~~~~----------------------------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 97 VLVTAV----------------------------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EEECCS----------------------------CHHHHHHHHTTEEEEEEEEECC
T ss_pred cccccc----------------------------cchHHHHHHHHhcCCcEEEEEE
Confidence 444421 1355778889999999999854
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.71 E-value=0.003 Score=46.46 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025180 41 HHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~-~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
+++.+||=+|+|... ..+.+++.. + ...|+++|.+++.++.+++. +.. .++..+ ............+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~---g-~~~vv~~~~~~~k~~~~~~~----ga~-~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVM---T-PATVIALDVKEEKLKLAERL----GAD-HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH---C-CCEEEEEESSHHHHHHHHHT----TCS-EEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhh---c-CcccccccchhHHHHHHhhc----ccc-eeecCcccHHHHHHHhhCCCCc
Confidence 578999999986443 333444432 2 34899999999988887753 322 333222 1112211123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. -...++...++|+++|+++++-.
T Consensus 102 d~vid~~g---------------------------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 102 NVAMDFVG---------------------------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEEEESSC---------------------------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred eEEEEecC---------------------------cchHHHHHHHHHhCCCEEEEEeC
Confidence 99987532 24568888999999999998653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.57 E-value=0.0025 Score=46.72 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=62.9
Q ss_pred cCCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhh-cC
Q 025180 40 EHHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKR-LA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~-~~ 113 (256)
.+++.+||=+|++ .|..++.+++.. ....|+++|.+++..+.+++. |.+ .++..+ ..+..... ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~----g~~~V~~~~~~~~~~~~~~~~----Ga~-~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAV----SGATIIGVDVREEAVEAAKRA----GAD-YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHH----TCCEEEEEESSHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCEEEEEeccccceeeeeeccccc----ccccccccccchhhHHHHHHc----CCc-eeeccCCcCHHHHHHHHhhc
Confidence 3688999999974 344444444442 235899999999988888763 433 222222 22222221 23
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.||+|+..-. -...++.+.+.++|+|+++++.
T Consensus 96 ~~~d~vid~~g---------------------------~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 96 KGVDAVIDLNN---------------------------SEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp SCEEEEEESCC---------------------------CHHHHTTGGGGEEEEEEEEECC
T ss_pred ccchhhhcccc---------------------------cchHHHhhhhhcccCCEEEEec
Confidence 56999987422 2466788889999999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.40 E-value=0.013 Score=42.62 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=60.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+=+|| |.++-.+++.+.+.+...+|+|+|.+++.++.+++. +...... .+.... .....|+|+...|
T Consensus 3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~~~~-~~~~~~----~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIIDEGT-TSIAKV----EDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCSEEE-SCGGGG----GGTCCSEEEECSC
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcchhhh-hhhhhh----hccccccccccCC
Confidence 4666776 566666777776666677999999999999887764 2211221 122111 1246899988655
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
- .....++..+.+.++++-.+.-
T Consensus 72 ~------------------------~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 72 V------------------------RTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp H------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred c------------------------hhhhhhhhhhhccccccccccc
Confidence 1 2356778888888998876664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.30 E-value=0.0075 Score=43.76 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=58.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++.+||=.|+|+-. +.+.+.+. ..+++|+++|.+++.++.+++ .|.+. .....|.........++.+|+
T Consensus 26 ~~g~~vlv~G~G~iG--~~a~~~a~--~~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLG--HVAVQYAK--AMGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTH--HHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccch--hhhhHHHh--cCCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccccCCCceE
Confidence 688999998886543 22333332 235689999999999888765 34332 111123333333322344444
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| .+.+ -...+....+.|+++|+++++.
T Consensus 98 v-~~~~---------------------------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 98 V-VTAV---------------------------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp E-ESSC---------------------------CHHHHHHHHHHEEEEEEEEECC
T ss_pred E-eecC---------------------------CHHHHHHHHHHhccCCceEecc
Confidence 4 4432 2456788888999999999854
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.82 E-value=0.0077 Score=44.10 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=61.0
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025180 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.||| .|.+++.+++.++ ...|+++|.+++..+.+++. |.+. ++.. +..........+
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G----~~~vi~~~~~~~k~~~ak~l----Ga~~-~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAG----ASRIIGVDINKDKFARAKEF----GATE-CINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHHH----TCSE-EECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHh----cCceEEEcccHHHHHHHHHh----CCcE-EEeCCchhhHHHHHHHHHcCC
Confidence 688999999886 2345555555432 34899999999988887753 3332 2211 122222222346
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ....++.+..++++||.++++.
T Consensus 98 g~D~vid~~G---------------------------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 98 GVDYSFECIG---------------------------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp CBSEEEECSC---------------------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCcEeeecCC---------------------------CHHHHHHHHHhhcCCceeEEEE
Confidence 7999987421 2466788888999998776643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.76 E-value=0.091 Score=40.62 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=64.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------h
Q 025180 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------R 111 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~ 111 (256)
..+++.+|=.|.+.| ++.++++.|.+. +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... . .
T Consensus 7 ~lenKvalITGas~G-IG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRG-IGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSH-HHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 346788888886655 788888888754 6799999999999998888887766666778888765421 0 1
Q ss_pred cCCCccEEEECCCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~ 129 (256)
.-+++|++|.|.......
T Consensus 84 ~~g~iDilvnnag~~~~~ 101 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDN 101 (251)
T ss_dssp HCSCCCEEEECCCCCCCC
T ss_pred hcCCceeeeecccccccc
Confidence 137899999987655433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.66 E-value=0.02 Score=42.06 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=60.1
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhh-cCCC
Q 025180 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKR-LAGL 115 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~-~~~~ 115 (256)
+++++||=.| .|.|.+++.+++.+ +++++++.-+++..+.+++ .|.+.-+ ...|+.+...+. ....
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-----g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred CCCCEEEEECCCCCcccccchhhccc-----cccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhCCCC
Confidence 5788999876 34556666666553 5689998888877776654 4544211 122333333332 2357
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+.... ...++.+.++|+++|+++.+
T Consensus 95 ~d~v~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA----------------------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC----------------------------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc----------------------------chHHHHHHHHhcCCCEEEEE
Confidence 999998421 23467778899999999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.66 E-value=0.015 Score=42.75 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=33.4
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025180 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++.+|+=.|||.. ..++.+++. ....+|+++|.+++.++.|++.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~----~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKS----AGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHH----cCCceEEEecCcHHHHHHHHhc
Confidence 68899999998743 344444444 2235899999999999998875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.12 Score=39.97 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchh--h----h--
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLE--K----R-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~--~----~-- 111 (256)
+++.||=.|+++| ++.++++.|.+. +++|+.++.+++.++.+.+.+...+.+. .++..|+.+.-. . .
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 6788999997755 566777777754 6799999999999998888887766543 667888765421 0 0
Q ss_pred cCCCccEEEECCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
.-+++|++|.|..+...
T Consensus 86 ~~g~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARP 102 (257)
T ss_dssp HHCCCSEEEECCCCCCC
T ss_pred hcCCCCEEEecccccCC
Confidence 12679999998766543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.62 E-value=0.01 Score=43.53 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025180 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+++++||=.|. | .|...+.+++. -+++|++++.+++..+.+++ .|.+.-+-..+...... ....+|+
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~-----~G~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~--~~~g~D~ 94 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARA-----MGLRVLAAASRPEKLALPLA----LGAEEAATYAEVPERAK--AWGGLDL 94 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH-----TTCEEEEEESSGGGSHHHHH----TTCSEEEEGGGHHHHHH--HTTSEEE
T ss_pred CCCCEEEEEeccccchhhhhhhhcc-----cccccccccccccccccccc----cccceeeehhhhhhhhh--ccccccc
Confidence 68899998874 3 35666666665 35799999999887777654 45443221222221111 2356999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+-.- | ..+..+.+.|+++|+++++
T Consensus 95 v~d~~---------------------G--------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLEVR---------------------G--------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEECS---------------------C--------TTHHHHHTTEEEEEEEEEC
T ss_pred ccccc---------------------c--------hhHHHHHHHHhcCCcEEEE
Confidence 87520 0 1146677899999999875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.019 Score=42.05 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CC
Q 025180 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~ 114 (256)
+++++||=.|+| .|...+.+++.. +++|++++.+++..+.+++. |.+ .++. .|+.+...+.- ..
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~l----Ga~-~vi~~~~~d~~~~v~~~t~g~ 96 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA----GAW-QVINYREEDLVERLKEITGGK 96 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH----TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhc----CCe-EEEECCCCCHHHHHHHHhCCC
Confidence 578899888655 566777777653 57999999999998887653 433 3332 23333333222 35
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+.... ...+......|+++|++++..
T Consensus 97 g~d~v~d~~g----------------------------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 97 KVRVVYDSVG----------------------------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CEEEEEECSC----------------------------GGGHHHHHHTEEEEEEEEECC
T ss_pred CeEEEEeCcc----------------------------HHHHHHHHHHHhcCCeeeecc
Confidence 6899877421 123667788999999987744
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.42 E-value=0.012 Score=43.34 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cc--hhhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TD--IASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d--~~~~~~~~~~~ 114 (256)
+++.+||=+|||.. ..++.+++.++ ...|+++|.+++.++.+++ .|.+ .++. .| ..+.......+
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G----~~~Vi~~d~~~~kl~~a~~----lGa~-~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAG----ASRIIGVGTHKDKFPKAIE----LGAT-ECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcC----CceeeccCChHHHHHHHHH----cCCc-EEEcCCCchhHHHHHHHHhcCC
Confidence 68899999999743 34444444432 3489999999999998875 3433 2222 22 12222222245
Q ss_pred CccEEEEC
Q 025180 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+++-.
T Consensus 97 G~d~vid~ 104 (174)
T d1p0fa2 97 GVDYAVEC 104 (174)
T ss_dssp CBSEEEEC
T ss_pred CCcEEEEc
Confidence 69999874
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.014 Score=42.40 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++.+|+=+|+|. |.+++.+++. -+++++++|.+++..+.+++ .|.+ .++...-.+.. ......+|++
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~-----~Ga~~i~~~~~~~~~~~a~~----lGad-~~i~~~~~~~~-~~~~~~~D~v 97 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHA-----MGAHVVAFTTSEAKREAAKA----LGAD-EVVNSRNADEM-AAHLKSFDFI 97 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSGGGHHHHHH----HTCS-EEEETTCHHHH-HTTTTCEEEE
T ss_pred CCCCEEEEeccchHHHHHHHHhhc-----ccccchhhccchhHHHHHhc----cCCc-EEEECchhhHH-HHhcCCCcee
Confidence 6889999998863 4444444443 25688899999888777664 3433 23322211111 1123579999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..-. + ...+..+.++|+++|+++++..
T Consensus 98 id~~g--------------------~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 98 LNTVA--------------------A-------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EECCS--------------------S-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeeee--------------------c-------chhHHHHHHHHhcCCEEEEecc
Confidence 87321 0 1226667789999999998643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.29 E-value=0.014 Score=42.80 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=57.9
Q ss_pred CCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc----hhhchhhhcCCC
Q 025180 41 HHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD----IASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~-~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~ 115 (256)
+++.+||=+|+|.+. ..+.+++. .....|+++|.+++..+.+++. +....+...+ ..........+.
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~----~g~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKA----AGAARIIGVDINKDKFAKAKEV----GATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH----cCCceEEeecCcHHHHHHHHHh----CCeeEEecCCchhHHHHHHHHHhcCC
Confidence 688999999997443 33333333 3346999999999998887664 3332221112 111112223467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEE
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 172 (256)
+|+++-... ....++.+...++.+ |.+++.
T Consensus 99 ~D~vid~~G---------------------------~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 99 VDFSFEVIG---------------------------RLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp BSEEEECSC---------------------------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred CCEEEecCC---------------------------chhHHHHHHHHHhcCCcceEEe
Confidence 999987432 245567777788886 555553
|
| >d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N6 adenine-specific DNA methylase, DAM domain: DNA methylase DpnM species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.22 E-value=0.16 Score=39.53 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025180 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
..++.+|.+.++ ....+.+|+.||+|.+.+.+. +. .++.-|+++..+.
T Consensus 13 ~~l~~~i~~~~p----~~~~~yvEpF~Gggav~~~~~-------~~-~~viND~n~~lin 60 (275)
T d2dpma_ 13 RQLLPVIRELIP----KTYNRYFEPFVGGGALFFDLA-------PK-DAVINDFNAELIN 60 (275)
T ss_dssp GGGHHHHHHHSC----SSCSCEEETTCTTCHHHHHHC-------CS-EEEEEESCHHHHH
T ss_pred HHHHHHHHHhcC----cccCEEEeeCCCHHHHHhhhc-------cC-cEEEEeCCHHHHH
Confidence 446677777764 346789999999999865431 22 6788999988653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.12 E-value=0.041 Score=39.97 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025180 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
-++.+|+=+|+|. |..++..+..+ ++.|+++|.+++.++..+.....+ .+....+-....... ...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~l-----GA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~--~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGL-----GAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAV--AEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHH--HTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhh--ccCcEE
Confidence 3679999999995 55666666654 579999999999988776654321 233333322221111 468999
Q ss_pred EEC
Q 025180 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
|..
T Consensus 100 I~a 102 (168)
T d1pjca1 100 IGA 102 (168)
T ss_dssp EEC
T ss_pred EEe
Confidence 984
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.14 Score=39.65 Aligned_cols=83 Identities=22% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++++|=-|.+ +.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+-+...+..|+.+... .. .-
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 67888877755 45677778877644 6799999999999998888888777666778888765421 00 12
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+++|+++.|.-...
T Consensus 87 g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 87 GKVDILVNNAGGGG 100 (255)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCCCEeeeCCcCCC
Confidence 68999999876543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.1 Score=38.30 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=60.6
Q ss_pred CCCCEEEEec--ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCc
Q 025180 41 HHPVLCMEVG--CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlG--cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
+.+.+||=.| .|.|.+++.+++.++ ...|+++..+++....+.+ ..+.+. +....++.+......+..+
T Consensus 29 G~~etVLI~gaaGgVG~~aiQlak~~G----a~~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~~~~~~~~~Gv 101 (187)
T d1vj1a2 29 GSNQTMVVSGAAGACGSLAGQIGHLLG----CSRVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAEQLREACPGGV 101 (187)
T ss_dssp TSCCEEEESSTTSTTGGGHHHHHHHTT----CSEEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCCchhhHHHHHHHHHcC----CcceecccchHHHHhhhhh---cccceEEeeccchhHHHHHHHHhccCc
Confidence 3447888876 467889888888743 2367777777665544332 234332 2222234444433345679
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
|+|+-.- + ...+....+.|+++|+++.+
T Consensus 102 Dvv~D~v------------------------G----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 102 DVYFDNV------------------------G----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEEESS------------------------C----HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEecC------------------------C----chhHHHHhhhccccccEEEe
Confidence 9998631 1 34577888999999999874
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.98 E-value=0.046 Score=44.98 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=43.5
Q ss_pred hHHHHHHHH----HhhcccccCCCCEEEEecccccHHHHHHHHHhccc---CCCceEEEEeCCHHHHHHHHHHH
Q 025180 24 SFALVDALL----ADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE---VPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 24 ~~~l~~~l~----~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~---~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.++.+.+. ..+......+...|+|+|+|+|.++..+...+... .....++-+|.|+...+.-++++
T Consensus 57 s~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l 130 (365)
T d1zkda1 57 SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 130 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence 455555443 33332222345689999999999987777665421 12457999999998776655544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.78 E-value=0.18 Score=35.95 Aligned_cols=87 Identities=22% Similarity=0.151 Sum_probs=54.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
|.=+|+ |.++-.+++.+.+. +.+|++.|.+++.++.+++. +.- .....+. +.. ...|+|+..-|.
T Consensus 3 I~iIG~--G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~----~~~-~~~~~~~-~~~-----~~~DiIilavp~ 67 (165)
T d2f1ka2 3 IGVVGL--GLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER----QLV-DEAGQDL-SLL-----QTAKIIFLCTPI 67 (165)
T ss_dssp EEEECC--SHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----TSC-SEEESCG-GGG-----TTCSEEEECSCH
T ss_pred EEEEee--cHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh----hcc-ceeeeec-ccc-----cccccccccCcH
Confidence 444544 66666666666543 56899999999988876542 221 1111222 211 468999975441
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025180 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....+++++...|+++-.++-
T Consensus 68 ------------------------~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 68 ------------------------QLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp ------------------------HHHHHHHHHHGGGSCTTCEEEE
T ss_pred ------------------------hhhhhhhhhhhhhcccccceee
Confidence 2367888999998888887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.62 E-value=0.055 Score=37.43 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.+++.+ ...++.+|..+.. ....-...|.+++-
T Consensus 6 ~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp ECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 56688888899888643 568999999999988765531 3378889877653 22223578999883
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.45 E-value=0.038 Score=40.56 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCCCEEEEecccc--cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhc-hhhhcCC
Q 025180 41 HHPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASG-LEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~--G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~-~~~~~~~ 114 (256)
+++.+||=.|++. |..++.+++. -+++|+++.-+++..+.+++. +.+ .++.-+ ..+. .......
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~-----~Ga~vi~~~~~~~~~~~~~~~----Ga~-~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKIAYLKQI----GFD-AAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHT----TCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHc-----cCCEEEEeCCCHHHHHHHHhh----hhh-hhcccccccHHHHHHHHhhcC
Confidence 5789999777754 4566666665 357999999999887776653 433 222222 1111 1122345
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.+|+|+-.-. ...++.+.++|+++|+++++
T Consensus 98 Gvd~v~D~vG----------------------------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 98 GYDCYFDNVG----------------------------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CEEEEEESSC----------------------------HHHHHHHGGGEEEEEEEEEC
T ss_pred CCceeEEecC----------------------------chhhhhhhhhccCCCeEEee
Confidence 6999987311 35678889999999999985
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.23 E-value=0.075 Score=44.15 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=43.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.++..++|+|+-.|..+..++.... ....+|+++|.++..++..++|+..+..
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~--~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTK--GKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHT--SCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcC--CCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 4678999999999998877776643 2345899999999999999999988764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.13 E-value=0.083 Score=36.38 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=44.1
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEEC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.++.. ...++.+|..+... ...-...|.+++.
T Consensus 6 iG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp ECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEEE
Confidence 47788888899988754 55899999999998876431 12677788765421 1112467887774
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.08 E-value=0.45 Score=36.64 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=61.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-+++++|=-|.+. .++.++++.+.++ +++|+..|.+++.++.+.+.+...+....++..|+.+... ..
T Consensus 6 L~GK~alITGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSR-GIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 3688889888664 4566777777654 6799999999999988888887777666777888754321 11
Q ss_pred cCCCccEEEECCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
...+.|++|.|.-+...
T Consensus 83 ~~~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIY 99 (259)
T ss_dssp TTTCCCEEEECCCCCCC
T ss_pred hCCCceEEEECCceecc
Confidence 23479999998765443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.06 E-value=0.032 Score=41.00 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=59.8
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc-hhhchhhhcCCCcc
Q 025180 41 HHPVLCMEVGCG--SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD-IASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG--~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~fD 117 (256)
.++.+||=-|.+ .|.+++.+++.+ +++|+++--+++..+.+++ .|.+..+-..+ ..+.......+.+|
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-----Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-----CCceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhhccCcC
Confidence 357788888754 456777777653 6789999988888887764 34432111111 11111122346799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+-+.. ...+....+.|++||+++.+..
T Consensus 101 ~vid~vg----------------------------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 101 AAVDPVG----------------------------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp EEEECST----------------------------TTTHHHHHHTEEEEEEEEECSC
T ss_pred EEEEcCC----------------------------chhHHHHHHHhCCCceEEEeec
Confidence 8877421 2347788889999999998654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.22 Score=38.79 Aligned_cols=127 Identities=13% Similarity=-0.006 Sum_probs=77.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
|++|.=|=-|++.++.++++.|.++ .++.|+..+-+++..+.+.+.+...+....++..|+.+... .. .-+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677555445566777788776543 25699999999999998888888777666888888765431 00 126
Q ss_pred CccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 115 LVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++|++|.|--......... ...+-...+... ..-.-.+.+.+...|+++|+++.+.
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN---~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTN---FFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHH---THHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCccccc
Confidence 8999999865432222111 000000000000 0012244667788899999988765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.79 E-value=0.054 Score=39.27 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc----h-hhchhhhcCC
Q 025180 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD----I-ASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d----~-~~~~~~~~~~ 114 (256)
+++.+|+=+|+|.+... ..++.. .....|+++|.+++..+.+++ .|.+ .++..+ . ..........
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~----~g~~~Vi~~~~~~~rl~~a~~----~GAd-~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHS----AGAKRIIAVDLNPDKFEKAKV----FGAT-DFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH----TTCSEEEEECSCGGGHHHHHH----TTCC-EEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEEecCCccchHHHHHHH----HhhchheeecchHHHHHHHHH----cCCc-EEEcCCCcchhHHHHHHhhccC
Confidence 68899999999885543 223333 334589999999998888765 3433 233211 1 1111111245
Q ss_pred CccEEEEC
Q 025180 115 LVDVMVVN 122 (256)
Q Consensus 115 ~fD~Ii~n 122 (256)
.+|+++-.
T Consensus 98 G~d~vid~ 105 (175)
T d1cdoa2 98 GVDFSLEC 105 (175)
T ss_dssp CBSEEEEC
T ss_pred Ccceeeee
Confidence 79999874
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.67 E-value=0.56 Score=36.25 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=76.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHHHcCCcceEEEcchhhchh--h------h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLEAHNVHADLINTDIASGLE--K------R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~ 111 (256)
-++++||=-|++.| ++.++++.+.++ +++|+..|.+ ++.++.+.+.+...+.+..++..|+.+... . .
T Consensus 16 L~gK~~lITGas~G-IG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRG-IGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 36788888888655 466677777654 6789999876 566777777777777666777788765321 1 0
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+..|+++.|..............+....... ....-.-.+.+.+...|+.+|.++++.
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~--~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFT--INTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHH--HHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhh--hccceeeeecccccccccccccccccc
Confidence 126799999987655433321111110000000 000112344566777788888877754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.51 E-value=0.32 Score=37.84 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=58.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh--h----h-
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE--K----R- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~--~----~- 111 (256)
+++++|=-|++.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+...+... ..+..|+.+... . .
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 3 SGKSVIITGSSNG-IGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 5788888887665 577777777654 6799999999999998888887766432 677888765421 1 0
Q ss_pred -cCCCccEEEECCC
Q 025180 112 -LAGLVDVMVVNPP 124 (256)
Q Consensus 112 -~~~~fD~Ii~npP 124 (256)
.-+++|+++.|.-
T Consensus 80 ~~~G~iDilVnnAG 93 (274)
T d1xhla_ 80 AKFGKIDILVNNAG 93 (274)
T ss_dssp HHHSCCCEEEECCC
T ss_pred HHcCCceEEEeecc
Confidence 1268999999854
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.17 E-value=0.32 Score=37.43 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~ 111 (256)
..|++||=-| |++.++.++++.+.++ +++|+.. +.+++..+.+.+.+...+.+...+..|+.+... . .
T Consensus 4 L~GK~alITG-as~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTG-AGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETT-TTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 3678888777 5677788888887754 5677764 577787888888888887776788888765321 1 1
Q ss_pred cCCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 112 LAGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+.+|++|.|........... ...+-...+... ....-.+.+.+...++.+|.++++.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLN---TRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHH---THHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HcCCCcEEEeccccccccccccchHHHHHHHHhhc---cceeeeehhhhhhhhhcCCcccccc
Confidence 1267999999886654333221 111111111000 0012234566667778887776654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.16 E-value=0.57 Score=35.99 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=61.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-++++||=.|++ +.++.++++.+.++ +++|+.++.+++.++.+.+.+...+....++..|+.+.-. ..
T Consensus 4 L~gK~alITGas-~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGS-KGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 368889988886 45566677776654 6799999999999988888888777766777888765431 12
Q ss_pred cCCCccEEEECCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~ 128 (256)
..+..|+++.|......
T Consensus 81 ~~g~idilinnag~~~~ 97 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIH 97 (258)
T ss_dssp TTSCCCEEEECCCCCCC
T ss_pred hCCCcEEEecccccccc
Confidence 23678999987755443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=92.06 E-value=0.29 Score=35.79 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred CCCCEEEEeccc---ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhch---hh-
Q 025180 41 HHPVLCMEVGCG---SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGL---EK- 110 (256)
Q Consensus 41 ~~~~~VLDlGcG---~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~---~~- 110 (256)
+++.+||=+..| .|..++.+++.+ +++++++--+++..+...+.++..|.+. ++.- +..+.. .+
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~-----Ga~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLL-----NFNSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-----TCEEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhc-----CCeEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHHHHH
Confidence 466667666333 456666666653 5688877444444444444445556543 2222 111111 11
Q ss_pred --hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025180 111 --RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 111 --~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.....+|+++-.- -...+....+.|+++|+++.+
T Consensus 101 ~~~~g~~vdvv~D~v----------------------------g~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 101 IKQSGGEAKLALNCV----------------------------GGKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTCCEEEEEESS----------------------------CHHHHHHHHHTSCTTCEEEEC
T ss_pred HhhccCCceEEEECC----------------------------CcchhhhhhhhhcCCcEEEEE
Confidence 1135689987521 023456677899999999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.00 E-value=1.1 Score=31.70 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=65.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----CCcc----eEEEcchhhchhhhcCCC
Q 025180 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH----NVHA----DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~----~~~~----~~~~~d~~~~~~~~~~~~ 115 (256)
++|.=+|+|. ++..++..|.+. +..|+.+|.+++.++..++.-... +... .....|..+.. ..
T Consensus 2 k~iaIiGaG~--~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~ 72 (184)
T d1bg6a2 2 KTYAVLGLGN--GGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KD 72 (184)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TT
T ss_pred CEEEEECccH--HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cC
Confidence 4566666654 444456666543 569999999998887765542110 0111 12222332221 46
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHHHHHHHHcCC
Q 025180 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQICLQMMEKGY 191 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~g~ 191 (256)
.|+|+..-|- .....+++++..+|+++-.+++ ..+... .......+...+.
T Consensus 73 aD~iii~v~~------------------------~~~~~~~~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 73 ADVILIVVPA------------------------IHHASIAANIASYISEGQLIIL-NPGATGGALEFRKILRENGA 124 (184)
T ss_dssp CSEEEECSCG------------------------GGHHHHHHHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred CCEEEEEEch------------------------hHHHHHHHHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence 8999874331 0157889999999999987665 333332 3345556655543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.99 E-value=0.53 Score=36.33 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++.+|=.|++.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+...+ ...++..|+.+... .. .-
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 6788998997665 677778777654 6799999999988887766654322 12567778765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|--..
T Consensus 81 g~iD~lVnnAG~~ 93 (268)
T d2bgka1 81 GKLDIMFGNVGVL 93 (268)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCcceeccccccc
Confidence 6899999876543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.63 E-value=0.74 Score=31.07 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|. +..++.+|.+++..+.++. .+ ..++.+|..+.. ....-.+.+.+++..+
T Consensus 6 ~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~~----~~--~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~---- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELR----GSEVFVLAEDENVRKKVLR----SG--ANFVHGDPTRVSDLEKANVRGARAVIVNLE---- 71 (129)
T ss_dssp ESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHHH----TT--CEEEESCTTSHHHHHHTTCTTCSEEEECCS----
T ss_pred ECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHHh----cC--ccccccccCCHHHHHHhhhhcCcEEEEecc----
Confidence 677888888888875 3368899999998776543 22 378889976542 2222367888888532
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+ +....++-...+.+.|...++...
T Consensus 72 -~-------------------d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 72 -S-------------------DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp -S-------------------HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred -c-------------------hhhhHHHHHHHHHHCCCceEEEEE
Confidence 0 112233444456688888777644
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=91.41 E-value=0.64 Score=36.07 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=76.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025180 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-+|+-.++ +..+ .++-+++.+|+.|.-.+..++++.. .....++..|..+.+... +.++=-+|+.+||
T Consensus 87 l~~YPGSP~ia---~~ll---R~~Drl~l~ELHp~e~~~L~~~~~~-~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp 159 (271)
T d2oo3a1 87 LSYYPGSPYFA---INQL---RSQDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 159 (271)
T ss_dssp CCEEECHHHHH---HHHS---CTTSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred cCcCCCCHHHH---HHhC---CCCCceEEeecCHHHHHHHHHHhcc-CCCceEEcCchHHHHHhhCCCCCCceEEEecCC
Confidence 35677777752 2333 3456999999999999888876532 123488899988776432 2355679999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCc
Q 025180 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYA 192 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~ 192 (256)
|-... .+.++++.+...++ +.|++++..|-... ...+.+.+.+.+.+
T Consensus 160 YE~k~---------------------ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k 210 (271)
T d2oo3a1 160 YERKE---------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSK 210 (271)
T ss_dssp CCSTT---------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSS
T ss_pred cCCHH---------------------HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcc
Confidence 95322 25566666666655 67888887774442 23455555555544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.17 E-value=2.1 Score=32.43 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCcceEEEcchhhchh--hh------
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
-+++++|=-|++.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+ ...+.+...+..|+.+... ..
T Consensus 3 l~gK~~lITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRG-LGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36788888887655 577777777654 679999999988877665554 4446555677888765421 10
Q ss_pred cCCCccEEEECCCCC
Q 025180 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|--..
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 126899999986543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.09 E-value=0.71 Score=37.43 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=69.7
Q ss_pred CCEEEEecccccHHHHHHHHH--------hc----ccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--c---eEEEcchh
Q 025180 43 PVLCMEVGCGSGYVITSLALM--------LG----QEVPGVQYIATDINPYAVEVTRKTLEAHNVH--A---DLINTDIA 105 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~--------l~----~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~---~~~~~d~~ 105 (256)
.-+|.|+||.+|..++.+... +. +..|..+|+--|+-.+-....=+.+....-. . ..+-+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 368999999999877432221 11 1235678888887766555544333221111 1 22233333
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCccccccc-chhhhcCC--CC---------cHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREG-IASAWAGG--EN---------GRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~-~~~~~~~~--~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+ +++++.|++++....+..+........ ....+..+ .. ....+..+|+.=.+-|+|||+++++.
T Consensus 132 ~rL--fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 132 GRL--FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCC--SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhc--CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 322 346889999986555444331111000 00011100 00 12255677777778899999999976
Q ss_pred eC
Q 025180 174 LT 175 (256)
Q Consensus 174 ~~ 175 (256)
.+
T Consensus 210 ~g 211 (359)
T d1m6ex_ 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.06 E-value=0.62 Score=35.81 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh---------hh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE---------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 111 (256)
-+++++|=-|+++| ++.++++.+.+. +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... ..
T Consensus 6 LkgK~alVTGas~G-IG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKG-IGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 36889998887655 566777776654 6799999999999988888887766666777788754321 11
Q ss_pred cCCCccEEEECCCCCC
Q 025180 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
+.+.+|+++.|.....
T Consensus 83 ~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 83 FGGKLDILINNLGAIR 98 (259)
T ss_dssp HTTCCSEEEEECCC--
T ss_pred hCCCcccccccccccC
Confidence 2367999999876543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.06 E-value=1.6 Score=33.15 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=55.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------h--hcCCCcc
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------K--RLAGLVD 117 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~--~~~~~fD 117 (256)
+|=-|++ +.++.++++.+.++ +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... . ..-+++|
T Consensus 4 alITGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555654 55677778777654 6799999999999998888887777666777888765421 0 0127899
Q ss_pred EEEECCCCC
Q 025180 118 VMVVNPPYV 126 (256)
Q Consensus 118 ~Ii~npP~~ 126 (256)
++|.|--+.
T Consensus 81 ilVnnAG~~ 89 (255)
T d1gega_ 81 VIVNNAGVA 89 (255)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 999986544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=1 Score=31.32 Aligned_cols=110 Identities=15% Similarity=0.027 Sum_probs=63.8
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025180 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|.+. +..++.+|.+++......+... .....++.+|..+.. ....-.+.|.+++..+-
T Consensus 9 ~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~--- 81 (153)
T d1id1a_ 9 CGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN--- 81 (153)
T ss_dssp ECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC---
T ss_pred ECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHHHHHhccccCCEEEEcccc---
Confidence 55578888888887654 4589999999875443333322 122378899977652 22234678999884320
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025180 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
+....++-...+-+.|.-.++.... ..+....+++.|..
T Consensus 82 ---------------------d~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Gad 120 (153)
T d1id1a_ 82 ---------------------DADNAFVVLSAKDMSSDVKTVLAVS----DSKNLNKIKMVHPD 120 (153)
T ss_dssp ---------------------HHHHHHHHHHHHHHTSSSCEEEECS----SGGGHHHHHTTCCS
T ss_pred ---------------------HHHHHHHHHHHHHhCCCCceEEEEc----CHHHHHHHHHCCCC
Confidence 1112223334455677777666332 22345556666654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.78 E-value=0.96 Score=34.52 Aligned_cols=81 Identities=26% Similarity=0.242 Sum_probs=57.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hcCC
Q 025180 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RLAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~~~ 114 (256)
++.+|=-|++ +.++.++++.|.++ +++|+.+|.+++.++.+.+.+...+.+...+..|+.+... . ..-+
T Consensus 2 gKValITGas-~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGAT-SGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4555666754 45577778877654 6799999999999998888888777666788888765421 1 0127
Q ss_pred CccEEEECCCCC
Q 025180 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
+.|++|.|--..
T Consensus 79 ~iDilVnnAG~~ 90 (257)
T d2rhca1 79 PVDVLVNNAGRP 90 (257)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEeccccc
Confidence 899999986543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.72 E-value=0.56 Score=33.94 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=56.9
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025180 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+..||=.|. |.|.+++.+++. -+++|+++.-+++..+.+++. |.+ .++.-+-.+......+..+|.++
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~-----~Ga~Via~~~~~~k~~~~~~l----Gad-~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHK-----LGYQVVAVSGRESTHEYLKSL----GAS-RVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHH-----TTCCEEEEESCGGGHHHHHHH----TEE-EEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHH-----cCCCeEEEecchhHHHHHHhh----ccc-cccccccHHHHHHHHhhcCCeeE
Confidence 346775543 345566666665 367899999999887777643 332 33333222222222345678876
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+ . -...+....+.|+++|+++.+-
T Consensus 102 D~-V---------------------------gg~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 102 DT-V---------------------------GDKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp ES-S---------------------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EE-c---------------------------chHHHHHHHHHhccccceEeec
Confidence 42 1 1355788888999999999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.87 Score=34.62 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hcC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~~ 113 (256)
.|+.||=-|++.|. +.++++.+.++ +++|+.+|.+++.++...+.+...+.....+..|+.+... . ..-
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56777777877764 55666666643 6799999999999998888887777666777888765532 0 123
Q ss_pred CCccEEEECCCCCCCCC
Q 025180 114 GLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~ 130 (256)
+..|+++.|--......
T Consensus 83 g~idilinnag~~~~~~ 99 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSD 99 (244)
T ss_dssp CCCSEEEECCCCCCCCC
T ss_pred CCCceeEeecccccccc
Confidence 67999999876554443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.20 E-value=0.42 Score=34.26 Aligned_cols=96 Identities=17% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh-hchhhhcCCCccE
Q 025180 42 HPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
++..||=-|. |.|.+.+.+++.+ +++|+++.-+++..+.+++. +.+.-+...|.. +.......+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-----Ga~Viat~~s~~k~~~~~~l----Gad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADYLKQL----GASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHHHHHH----TCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-----CCceEEEecCHHHHHHHHhh----cccceEeccchhchhhhcccCCCceE
Confidence 3456776553 4556777777764 56899999988877776553 443222111111 1111112457999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025180 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+-+. -...+..+.+.|+++|+++++-.
T Consensus 94 vid~v----------------------------gg~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 94 AVDPV----------------------------GGKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp EEESC----------------------------CTHHHHHHHTTEEEEEEEEECCC
T ss_pred EEecC----------------------------cHHHHHHHHHHhccCceEEEeec
Confidence 87641 13557888999999999998543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.08 E-value=1.1 Score=34.12 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
+++++|=-|.+. .++.++++.+.++ +++|+..|.+++.++.+.+.+ +-...++..|+.+... . . .-
T Consensus 5 ~gK~alITGas~-GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGAS-GVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 678888888654 4677788877654 679999999998877665543 3334566677654321 0 0 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 79 g~iDilVnnAG~~ 91 (253)
T d1hxha_ 79 GTLNVLVNNAGIL 91 (253)
T ss_dssp CSCCEEEECCCCC
T ss_pred CCCCeEEeccccc
Confidence 6899999987544
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.08 E-value=1.3 Score=33.74 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=55.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++++|=-|.+ +.++.++++.+.+. +++|+.+|.+++.++.+.+.+.. +-...++..|+.+... .. .-
T Consensus 5 ~gK~alVTGas-~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGT-LGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57888888855 45677777777654 67999999999888877766532 2233777888765421 10 12
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+++|++|.|-.+..
T Consensus 81 G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 81 GPVSTLVNNAGIAV 94 (251)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCceEEEecccccc
Confidence 68999999875543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.64 E-value=0.67 Score=35.58 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=59.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++++|=-|.+. .++.++++.|.+. ++.|+.+|.+++.++.+.+.+...+.+...+..|+.+... .. .-
T Consensus 4 ~gK~alITGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGG-NIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 678888778654 4567777777654 6799999999999998888887777666778888765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|-.+.
T Consensus 81 g~iDilVnnaG~~ 93 (260)
T d1zema1 81 GKIDFLFNNAGYQ 93 (260)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCeehhhhccc
Confidence 6899999886543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.00 E-value=1.1 Score=32.56 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=51.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh-hhcCCCccEE
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE-KRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~I 119 (256)
-++++||=.|++.| ++..+++.+.++ +++|+.++.+++..+.+.+.+..+. ...+...|+.+... ...-+..|++
T Consensus 21 l~gK~vlItGasgG-IG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 21 VKGKKAVVLAGTGP-VGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhcCcCee
Confidence 47899998887655 455666666654 6799999999998887777765542 11334444433211 1112578999
Q ss_pred EECCC
Q 025180 120 VVNPP 124 (256)
Q Consensus 120 i~npP 124 (256)
|.|-.
T Consensus 97 in~Ag 101 (191)
T d1luaa1 97 FTAGA 101 (191)
T ss_dssp EECCC
T ss_pred eecCc
Confidence 98754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=2 Score=32.38 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=53.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hcC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~~ 113 (256)
+++++|=-|.+.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+. .....+..|+.+... . ..-
T Consensus 3 ~gK~alITGas~G-IG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRG-IGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 5778888886654 577777777654 6799999999988877665543 233566777654321 1 012
Q ss_pred CCccEEEECCCCCC
Q 025180 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
++.|++|.|--...
T Consensus 77 g~iDilVnnAg~~~ 90 (243)
T d1q7ba_ 77 GEVDILVNNAGITR 90 (243)
T ss_dssp CSCSEEEECCCCCC
T ss_pred CCcceehhhhhhcc
Confidence 68999998865443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.83 E-value=2.4 Score=29.21 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|.++..+++.+.+..+ .+++..|.+++.++...+. .+. .. ..+.... ...|+|+..-+
T Consensus 7 G~G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~~l~~~---~~~--~~-~~~~~~v------~~~Div~lavk------- 66 (152)
T d1yqga2 7 GGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKE---LGV--ET-SATLPEL------HSDDVLILAVK------- 66 (152)
T ss_dssp CCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHH---TCC--EE-ESSCCCC------CTTSEEEECSC-------
T ss_pred cCcHHHHHHHHHHHHCCC-CcEEEEeCChhHHHHhhhh---ccc--cc-ccccccc------cccceEEEecC-------
Confidence 446666667665544343 4899999999887765543 232 11 1222221 35799886321
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecC
Q 025180 132 EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
...+..+.+-+++.+.++++.......+.+.+.+. .........+..
T Consensus 67 ---------------------P~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~-~~~~iir~mpn~ 113 (152)
T d1yqga2 67 ---------------------PQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLG-GTRRIVRVMPNT 113 (152)
T ss_dssp ---------------------HHHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTT-SCCCEEEEECCG
T ss_pred ---------------------HHHHHHhHHHHhhcccEEeecccCCCHHHHHHHhC-cCcceEeecccc
Confidence 12233444445666777776655555556555553 223455555443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.63 E-value=3.1 Score=31.44 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
+++++|=-|.+. .++.++++.+.++ +++|+.+|.+++.++.+.+.+ +.+...+..|+.+... .. .-
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 4 DGKTALITGSAR-GIGRAFAEAYVRE--GARVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTEEEEEETCSS-HHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 578888888654 5566777777654 679999999988776655443 4444677778755421 10 12
Q ss_pred CCccEEEECCCCCCC
Q 025180 114 GLVDVMVVNPPYVPT 128 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~ 128 (256)
++.|++|.|.-....
T Consensus 78 g~iDilVnnAg~~~~ 92 (256)
T d1k2wa_ 78 GSIDILVNNAALFDL 92 (256)
T ss_dssp SCCCEEEECCCCCCC
T ss_pred CCccEEEeecccccc
Confidence 689999998765543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=2.2 Score=32.28 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=-|++.| ++.++++.+.++ +++|+..|.+++.++.+.+.+. ...++..|+.+... .. .-
T Consensus 5 ~GK~alITGas~G-IG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRG-IGAGIVRAFVNS--GARVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 6788998887665 677777877654 6799999999988776654321 23677778754321 10 11
Q ss_pred CCccEEEECCCCC
Q 025180 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|++|.|.-..
T Consensus 78 g~iDilVnnAG~~ 90 (250)
T d1ydea1 78 GRLDCVVNNAGHH 90 (250)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 6799999987544
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.55 E-value=1.4 Score=33.95 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh--h----h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE--K----R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~--~----~ 111 (256)
.+++++|=.|++. .++.++++.+.++ +++|+.+|.+++.++.+.+.+...+... ..+..|+.+... . .
T Consensus 3 L~gK~alVTGas~-GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSSN-GIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCSS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCc-HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 3678888888654 5566777777654 6799999999999998888887665432 677888765321 1 0
Q ss_pred --cCCCccEEEECCCC
Q 025180 112 --LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 --~~~~fD~Ii~npP~ 125 (256)
.-+++|++|.|--.
T Consensus 80 ~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCceEEEeCCcc
Confidence 12679999998543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.16 E-value=3 Score=30.32 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++...
T Consensus 7 GlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 7 GLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence 6666666677766544 458999999999887654
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=86.04 E-value=3.1 Score=31.27 Aligned_cols=79 Identities=24% Similarity=0.265 Sum_probs=52.9
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeC-CHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCc
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDI-NPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLV 116 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~-~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~f 116 (256)
||=-|. ++.++.++++.+.+. +++|+..|. +++..+.+.+.+...+-+..++..|+.+... .. .-+++
T Consensus 4 ~lITGa-s~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 4 VVVTGA-SRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEETTC-SSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred EEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 333454 455788888887754 678887765 6777888888777777666778888765421 10 12689
Q ss_pred cEEEECCCCCC
Q 025180 117 DVMVVNPPYVP 127 (256)
Q Consensus 117 D~Ii~npP~~~ 127 (256)
|++|.|--...
T Consensus 81 DiLVnnAg~~~ 91 (244)
T d1edoa_ 81 DVVVNNAGITR 91 (244)
T ss_dssp SEEEECCCCCC
T ss_pred Ccccccccccc
Confidence 99999865443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.43 E-value=4.5 Score=28.43 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhchhhhcCCCccEEEECCCCCCCCC
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~ 130 (256)
|.|.++..+++.|.+. +..|++.|.+++..+...+..........+... +....... ....-+++++-++
T Consensus 8 GlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------ 78 (178)
T d1pgja2 8 GLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAAS-LKKPRKALILVQA------ 78 (178)
T ss_dssp CCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHH-BCSSCEEEECCCC------
T ss_pred eehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHh-cccceEEEEeecC------
Confidence 7788888888887754 568999999999877665543221211122222 22222211 1222233333222
Q ss_pred cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH---HHHHHHHHcCCcE
Q 025180 131 DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS---QICLQMMEKGYAA 193 (256)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~g~~~ 193 (256)
.......+......+++|.+++- .+....+ ++.+.+.+.++..
T Consensus 79 ------------------~~~~~~~~~~~~~~~~~~~iii~--~st~~~~~~~~~~~~l~~~~~~~ 124 (178)
T d1pgja2 79 ------------------GAATDSTIEQLKKVFEKGDILVD--TGNAHFKDQGRRAQQLEAAGLRF 124 (178)
T ss_dssp ------------------SHHHHHHHHHHHHHCCTTCEEEE--CCCCCHHHHHHHHHHHHTTTCEE
T ss_pred ------------------cchhhhhhhhhhhhccccceecc--cCccchhHHHHHHHHHhhcceeE
Confidence 12245667788888999887765 2233333 4555565666543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.33 E-value=3.2 Score=31.90 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCcceEEEcchhhchh--------hh
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVHADLINTDIASGLE--------KR 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--------~~ 111 (256)
.+++++|=-|++.| ++.++++.+.+. +++|+.+|.+++.++.+.+.+. ..+....++..|+.+... ..
T Consensus 23 l~gK~alITGas~G-IG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 23 FQGKVAFITGGGTG-LGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 46788998888665 677778777654 6799999999988776665543 445555677777754421 11
Q ss_pred cCCCccEEEECCCCCCCC
Q 025180 112 LAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~ 129 (256)
..+++|+++.|.-.....
T Consensus 100 ~~g~iDilvnnAg~~~~~ 117 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFIS 117 (294)
T ss_dssp HTCSCSEEEECCCCCCCS
T ss_pred hccccchhhhhhhhcccc
Confidence 247899999987554433
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=85.23 E-value=2.1 Score=32.57 Aligned_cols=84 Identities=7% Similarity=0.017 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCcceEEEcchhhchh------h--h
Q 025180 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVHADLINTDIASGLE------K--R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~~~~~~~d~~~~~~------~--~ 111 (256)
.+++++|=-|. ++.++.++++.+.+. +++|+.+|.+++.++.+.+.+ ...+.+...+..|+.+... . .
T Consensus 7 l~gK~alITGa-s~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGG-NRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888885 456677788877654 679999999877665554444 4456566777888765421 1 1
Q ss_pred cCCCccEEEECCCCCC
Q 025180 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
.-+++|++|.|.....
T Consensus 84 ~~g~iDilVnnAg~~~ 99 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSV 99 (260)
T ss_dssp HSCSEEEEEECCCCCC
T ss_pred HhCCCcEecccccccc
Confidence 1378999999876543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.19 E-value=3.6 Score=30.77 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=54.6
Q ss_pred EEEecccccHHHHHHHHHhcccCCC-----ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h------hc
Q 025180 46 CMEVGCGSGYVITSLALMLGQEVPG-----VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K------RL 112 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~-----~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~------~~ 112 (256)
||=-|++.| ++.++++.+.+++.+ ..++..+.+++.++.+.+.+...+....++..|+.+... . ..
T Consensus 4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 344566555 666777776554321 248999999999988888877766666778888765431 1 11
Q ss_pred CCCccEEEECCCCCCC
Q 025180 113 AGLVDVMVVNPPYVPT 128 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~ 128 (256)
-++.|+++.|.-....
T Consensus 83 ~g~iDilvnnAg~~~~ 98 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRF 98 (240)
T ss_dssp TSCCSEEEECCCCCCC
T ss_pred cCCcceeecccccccC
Confidence 3689999988755443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.15 E-value=2.2 Score=32.08 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=68.7
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--------hhc
Q 025180 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--------KRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 112 (256)
++++||=.|+++| .++.++++.+.++ +++|+..+.+++..+.+.+.....+.. .....|..+... ...
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGSD-IVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcCCc-ceeecccchHHHHHHHHHHhhhc
Confidence 6788998888764 4455566666543 678999999988777776666554432 333444332211 112
Q ss_pred CCCccEEEECCCCCCCCCccccccc--chhhhcCC-CCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025180 113 AGLVDVMVVNPPYVPTPEDEVGREG--IASAWAGG-ENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+..|.++.|..+...........+ ....|... .........+.+.+...+++++.++++.
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~is 144 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 144 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence 4778999988655432221100000 00000000 0000122334455667788888877755
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.30 E-value=3.1 Score=31.40 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=-|.+ +.++.++++.+.++ +++|+..|.+++..+.+++. ...++..|+.+... .. .-
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTGGA-RGIGRAIAQAFARE--GALVALCDLRPEGKEVAEAI------GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHHHH------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 67888888855 45677778877654 67999999998776554321 23566777765321 10 12
Q ss_pred CCccEEEECCCC
Q 025180 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
++.|++|.|--.
T Consensus 75 G~iDiLVnnAG~ 86 (248)
T d2d1ya1 75 GRVDVLVNNAAI 86 (248)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCeEEEeCcC
Confidence 689999988644
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=84.14 E-value=4 Score=30.83 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC-HHHHHHHHHHHH-HcCCcceEEEcchhhchh--hh------
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN-PYAVEVTRKTLE-AHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~-~~~i~~a~~~~~-~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
+++++|=-|++.| ++.++++.|.++ +++|+.++.+ ++.++.+.+.+. ..+.+..++..|+.+... ..
T Consensus 3 ~gK~alITGas~G-IG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGSTSG-IGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCSSH-HHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCH-HHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5677886676654 567777777654 6799999986 566666666554 345555777788765421 11
Q ss_pred cCCCccEEEECCCCCC
Q 025180 112 LAGLVDVMVVNPPYVP 127 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~ 127 (256)
.-++.|++|.|--...
T Consensus 80 ~~G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQH 95 (260)
T ss_dssp HHSCCSEEEECCCCCC
T ss_pred HhCCCcEEEeeccccc
Confidence 1267999999875443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.93 E-value=1.2 Score=33.47 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEE
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
++++||=-|.+.| ++.++++.+.+. +++|+.+|.+++.++.. ..+++..|+.+..... .-+++|++
T Consensus 3 kgK~~lVTGas~G-IG~aia~~l~~~--Ga~V~~~~r~~~~l~~~---------~~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 3 RDKGVLVLAASRG-IGRAVADVLSQE--GAEVTICARNEELLKRS---------GHRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHT---------CSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHhc---------CCcEEEcchHHHHHHHHHHhCCCcEE
Confidence 5788888886655 677777777654 67999999998765432 2256677776543221 13689999
Q ss_pred EECCCC
Q 025180 120 VVNPPY 125 (256)
Q Consensus 120 i~npP~ 125 (256)
|.|--.
T Consensus 71 VnnAG~ 76 (234)
T d1o5ia_ 71 VLNAGG 76 (234)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 998643
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=82.68 E-value=7.5 Score=28.77 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=47.1
Q ss_pred cccCCCCEEEEecccc--cHHHHHHHHHhcccCCCceEEE-EeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC
Q 025180 38 LVEHHPVLCMEVGCGS--GYVITSLALMLGQEVPGVQYIA-TDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG 114 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~--G~~~~~l~~~l~~~~~~~~v~g-iD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 114 (256)
.++.++.+|-=+|||. |.........+.+..++.+++| .|.+++..+.+. +..+.+......|..+... +.
T Consensus 11 ~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~---~~ 84 (237)
T d2nvwa1 11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTI---EQLQLKHATGFDSLESFAQ---YK 84 (237)
T ss_dssp SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHH---HHTTCTTCEEESCHHHHHH---CT
T ss_pred CCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHH---Hhcccccceeecchhhccc---cc
Confidence 3445778999999997 3343322222322246778886 688887655443 3344443333455555533 35
Q ss_pred CccEEEECCC
Q 025180 115 LVDVMVVNPP 124 (256)
Q Consensus 115 ~fD~Ii~npP 124 (256)
.+|+|+..-|
T Consensus 85 ~iD~V~i~tp 94 (237)
T d2nvwa1 85 DIDMIVVSVK 94 (237)
T ss_dssp TCSEEEECSC
T ss_pred ccceeeccCC
Confidence 7898887543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=82.51 E-value=5.8 Score=27.40 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
|.|..+..+++.|.+. +..|++.|.+++..+.+.+. + -....+..+.. ...|+|++.-|
T Consensus 7 GlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~----~---~~~~~~~~e~~-----~~~d~ii~~v~ 65 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA----G---AETASTAKAIA-----EQCDVIITMLP 65 (161)
T ss_dssp CCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----T---CEECSSHHHHH-----HHCSEEEECCS
T ss_pred ehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh----h---hhhcccHHHHH-----hCCCeEEEEcC
Confidence 5566666777776643 56899999999887766542 2 12222333332 35799998654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=2.4 Score=32.32 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=55.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhh--------hc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEK--------RL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~--------~~ 112 (256)
+++++|=.|+++| ++.++++.+.++ +++|+.++.+++.++.+.+.+... +........|..+.... ..
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 6789998898877 567777777654 679999999999988877665443 33335556564432210 11
Q ss_pred CCCccEEEECCCCC
Q 025180 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
.+..|+++.|-...
T Consensus 90 ~g~~~~li~nag~~ 103 (269)
T d1xu9a_ 90 MGGLDMLILNHITN 103 (269)
T ss_dssp HTSCSEEEECCCCC
T ss_pred hCCccccccccccc
Confidence 36789998876443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=7.9 Score=28.79 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh--cCCCcc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR--LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~--~~~~fD 117 (256)
.++++|=.|++. .++.++++.+.++ +++|+.+|.+++.++.+.+.+. ....+..|+.+... .. .-+++|
T Consensus 6 ~GK~~lITGas~-GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGK-GIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 688999999665 5566777777643 6799999999887776554321 23566777654421 11 126899
Q ss_pred EEEECCCCCC
Q 025180 118 VMVVNPPYVP 127 (256)
Q Consensus 118 ~Ii~npP~~~ 127 (256)
++|.|-....
T Consensus 79 ilVnnAg~~~ 88 (244)
T d1pr9a_ 79 LLVNNAAVAL 88 (244)
T ss_dssp EEEECCCCCC
T ss_pred EEEecccccc
Confidence 9999875543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.46 E-value=5 Score=28.24 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=62.7
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-e-EEEcchhhchhhhcCCCccEEEECCCCCCCC
Q 025180 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-D-LINTDIASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
|.|.++..++..|.+. +.+|++.|.+++.++...++ +... . .-.....+.... -...|.++...|-
T Consensus 9 GlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~--~~~~~~ii~~~~~---- 76 (176)
T d2pgda2 9 GLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSLEEMVSK--LKKPRRIILLVKA---- 76 (176)
T ss_dssp CCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSHHHHHHH--BCSSCEEEECSCT----
T ss_pred eEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHh----ccccccccchhhhhhhhhh--hcccceEEEecCc----
Confidence 6678888888887754 55899999999888765543 2111 1 111122222111 2456777775431
Q ss_pred CcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH---HHHHHHHHcCCcE
Q 025180 130 EDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS---QICLQMMEKGYAA 193 (256)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~g~~~ 193 (256)
-......+..+...+++|-+++-. +..... ++.+.+.+.|...
T Consensus 77 -------------------~~~v~~v~~~l~~~~~~g~iiid~--sT~~~~~~~~~~~~~~~~g~~~ 122 (176)
T d2pgda2 77 -------------------GQAVDNFIEKLVPLLDIGDIIIDG--GNSEYRDTMRRCRDLKDKGILF 122 (176)
T ss_dssp -------------------THHHHHHHHHHHHHCCTTCEEEEC--SCCCHHHHHHHHHHHHHTTCEE
T ss_pred -------------------hHHHHHHHHHHHhccccCcEEEec--CcchhHHHHHHHHHHHhcCCce
Confidence 112455677888888888765542 222233 4556666666654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.23 E-value=7 Score=27.50 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=39.8
Q ss_pred EEEEecccc-cHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEE
Q 025180 45 LCMEVGCGS-GYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 45 ~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+|.=+|||. |.. .+..+.. .++..++|+ |.+++..+... ...+... .-...|+.+.+. +..+|+|+.
T Consensus 3 ki~iIG~G~~g~~---~~~~l~~-~~~~~i~ai~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~---~~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARK---VSRAIHL-APNATISGVASRSLEKAKAFA---TANNYPESTKIHGSYESLLE---DPEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHH---HHHHHHH-CTTEEEEEEECSSHHHHHHHH---HHTTCCTTCEEESSHHHHHH---CTTCCEEEE
T ss_pred EEEEEcCCHHHHH---HHHHHHh-CCCCEEEEEEeCCccccccch---hccccccceeecCcHHHhhh---ccccceeee
Confidence 577789985 433 2333321 467788876 88876544333 3444433 234456666543 357899887
Q ss_pred CCC
Q 025180 122 NPP 124 (256)
Q Consensus 122 npP 124 (256)
.-|
T Consensus 73 ~tp 75 (184)
T d1ydwa1 73 PLP 75 (184)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.92 E-value=3.3 Score=31.08 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh--cCCCcc
Q 025180 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR--LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~--~~~~fD 117 (256)
.++++|=-|++.| ++.++++.+.++ +++|+.+|.+++.++.+.+.+. ....+..|+.+... .. .-+++|
T Consensus 4 ~GK~alITGas~G-IG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKG-IGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 6788898886655 677777777654 6799999999877665544321 23566777765421 11 126899
Q ss_pred EEEECCCCC
Q 025180 118 VMVVNPPYV 126 (256)
Q Consensus 118 ~Ii~npP~~ 126 (256)
++|.|--..
T Consensus 77 ilVnnAg~~ 85 (242)
T d1cyda_ 77 LLVNNAALV 85 (242)
T ss_dssp EEEECCCCC
T ss_pred EEEECCccc
Confidence 999986543
|