BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025181
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 8 QFVLFGSSIVQLSFSNG---------GWGAILSDIYARKADILLRGYYGWNSRRALQVLD 58
+F+LFG SI + +F+ GA L + Y RK DIL RG+ G+ SR AL++L
Sbjct: 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILP 64
Query: 59 QVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRI 118
++ ++ I + +++G ND+ P VPLPE+++N+R++ + +KS R
Sbjct: 65 EILKHESNI--VMATIFLGANDACSAGPQS----VPLPEFIDNIRQMVSLMKSYHI--RP 116
Query: 119 IFLSTPPVDEARINQGTSEIFS-ELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKR 177
I + VD + + SE + RTNE YSDA L +E V V L A Q+
Sbjct: 117 IIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQE 176
Query: 178 --DDWKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPSLHWKSMPTEFSE 227
D W+ TDG+H S +G KI E+LKV++ + P H K+M + +
Sbjct: 177 GGDAWQQ-LLTDGLHFSGKGYKIFHDELLKVIET--FYPQYHPKNMQYKLKD 225
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 26/196 (13%)
Query: 2 VGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVF 61
+ P + G SIV+ L +++ I+ RG G+ + L+ LD
Sbjct: 30 ISVVEPNILFIGDSIVEYY--------PLQELFGTSKTIVNRGIRGYQTGLLLENLDAHL 81
Query: 62 PKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFL 121
A + L+I G ND +G VP+ E + N+ I + T I L
Sbjct: 82 YGGAVDKIFLLI---GTND--------IGKDVPVNEALNNLEAIIQSVARDYPLTEIKLL 130
Query: 122 STPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG-VKVVDLFTAIQKR-DD 179
S PV+E Q I R+NE Q ++ A L V+ V +F + +
Sbjct: 131 SILPVNEREEYQQAVYI-----RSNEKIQNWNQAYQELASAYXQVEFVPVFDCLTDQAGQ 185
Query: 180 WKNACFTDGIHLSEEG 195
K TDG+HLS G
Sbjct: 186 LKKEYTTDGLHLSIAG 201
>pdb|1JRL|A Chain A, Crystal Structure Of E. Coli Lysophospholiase L1ACYL-Coa
Thioesterase IPROTEASE I L109P MUTANT
pdb|1V2G|A Chain A, The L109p Mutant Of E. Coli Thioesterase IPROTEASE
ILYSOPHOSPHOLIPASE L1 (TAP) IN COMPLEXED WITH OCTANOIC
Acid
Length = 190
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 22 SNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81
++ W A+L+D + K ++ G S++ L L + + QP V+V +GGND
Sbjct: 19 ASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQH---QPRWVLVELGGNDG 75
Query: 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSE 141
+ G P + + +R+I +K+ + ++ + P R N+ S I+ +
Sbjct: 76 L----RGFQPQ----QTEQTLRQILQDVKAANAEPLLMQIRPPANYGRRYNEAFSAIYPK 127
Query: 142 LVR 144
L +
Sbjct: 128 LAK 130
>pdb|1IVN|A Chain A, E.Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1
pdb|1U8U|A Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 IN
COMPLEXED With Octanoic Acid
Length = 190
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 22 SNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81
++ W A+L+D + K ++ G S++ L L + + QP V+V +GGND
Sbjct: 19 ASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQH---QPRWVLVELGGNDG 75
Query: 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSE 141
+ G P + + +R+I +K+ + ++ + P R N+ S I+ +
Sbjct: 76 L----RGFQPQ----QTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPK 127
Query: 142 LVR 144
L +
Sbjct: 128 LAK 130
>pdb|1J00|A Chain A, E. Coli Thioesterase I/protease I/lysophospholipase L1 In
Complexed With Diethyl Phosphono Moiety
Length = 190
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 22 SNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81
++ W A+L+D + K ++ G S++ L L + + QP V+V +GGND
Sbjct: 19 ASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQH---QPRWVLVELGGNDG 75
Query: 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSE 141
+ G P + + +R+I +K+ + ++ + P R N+ S I+ +
Sbjct: 76 L----RGFQPQ----QTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPK 127
Query: 142 LVR 144
L +
Sbjct: 128 LAK 130
>pdb|1YZF|A Chain A, Crystal Structure Of The LipaseACYLHYDROLASE FROM
ENTEROCOCCUS Faecalis
Length = 195
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR--------KADILLRGYYGWNSRRALQVLDQ 59
+ VLFG SI + + +L D+ R + ++ G G + L+ L+
Sbjct: 3 KIVLFGDSITA-GYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLN- 60
Query: 60 VFPKDAPIQ-PSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRI 118
K+ I+ P V+++ G ND+ L ++ + + EN+ + + S ++
Sbjct: 61 ---KEVLIEKPDEVVIFFGANDA------SLDRNITVATFRENLETMIHEIGS----EKV 107
Query: 119 IFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRD 178
I ++ P D R + ELV+ + + H L V+DL+ A+
Sbjct: 108 ILITPPYADSGRRPERPQTRIKELVKVAQ--------EVGAAHNL--PVIDLYKAMTVYP 157
Query: 179 DWKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPS 215
DG+H S+ G +++ A I++ +K KP
Sbjct: 158 GTDEFLQADGLHFSQVGYELLGALIVREIK-GRLKPK 193
>pdb|1VJG|A Chain A, Crystal Structure Of A Gdsl-like Lipase (alr1529) From
Nostoc Sp. Pcc 7120 At 2.01 A Resolution
Length = 218
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 70 SLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEA 129
SLV+ G ND+ + P V + E ++N R I T K L ++ +S P E
Sbjct: 90 SLVVFSFGLNDTTLENGK---PRVSIAETIKNTREILTQAKKLYP---VLXISPAPYIEQ 143
Query: 130 RINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDW-KNACFTDG 188
+ + G RT +L Q+ + +C +L V +D+F ++K W A DG
Sbjct: 144 Q-DPGRRR------RTIDLSQQLA----LVCQDLDVPYLDVFPLLEKPSVWLHEAKANDG 192
Query: 189 IHLSEEGSKIVVAEILKVLKQAEWKPSLHW 218
+H + G A I++ W L+W
Sbjct: 193 VH-PQAGGYTEFARIVE-----NWDAWLNW 216
>pdb|1Z8H|A Chain A, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|B Chain B, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|C Chain C, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|D Chain D, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
Length = 218
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 70 SLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEA 129
SLV+ G ND+ + P V + E ++N R I T K L ++ +S P E
Sbjct: 90 SLVVFSFGLNDTTLENGK---PRVSIAETIKNTREILTQAKKLYP---VLXISPAPYIEQ 143
Query: 130 RINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDW-KNACFTDG 188
+ + G RT +L Q+ + +C +L V +D+F ++K W A DG
Sbjct: 144 Q-DPGRRR------RTIDLSQQLA----LVCQDLDVPYLDVFPLLEKPSVWLHEAKANDG 192
Query: 189 IHLSEEGSKIVVAEILKVLKQAEWKPSLHW 218
+H + G A I++ W L+W
Sbjct: 193 VH-PQAGGYTEFARIVE-----NWDAWLNW 216
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 628 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 687
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 688 KRGVYTIRKEGDEYKIAYY 706
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 628 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 687
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 688 KRGVYTIRKEGDEYKIAYY 706
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 628 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 687
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 688 KRGVYTIRKEGDEYKIAYY 706
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQ-------------KYSDACINLCHELGVK 166
++ P VD A NQ E+ S L+ NE Q KY D+ + ++ V
Sbjct: 626 YMLIPNVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVL 685
Query: 167 VVDLFTAIQKRDDWKNACF 185
++T ++ D++K A +
Sbjct: 686 KRGVYTIRKEGDEYKIAYY 704
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 46 YGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLG 90
Y NSR +LD F PIQ + V + G + + P+G G
Sbjct: 34 YKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSG 78
>pdb|3DT6|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3DT9|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
Length = 232
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G S+VQL + W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDSLVQLMHQSEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGTNN 105
>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
pdb|1GQP|B Chain B, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
Length = 221
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 169 DLF-TAIQKRDDWKNACFTDGIHLSEEGSKIV-VAEILKVLKQAEWKPSLHWKSMPTEFS 226
DL+ Q+ ++N + H+ +G +I+ A ++ V A WKPS P +F+
Sbjct: 16 DLYVNGFQEEIQYQNPTPENLQHMFHQGIEILDSARMINVTHLALWKPSSFKLGNPVDFA 75
Query: 227 EDSPYD 232
D YD
Sbjct: 76 LDDNYD 81
>pdb|1BWR|A Chain A, Probing The Substrate Specificity Of The Intracellular
Brain Platelet-Activating Factor Acetylhydrolase
Length = 233
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G S+VQL W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDSLVQLMHQCEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGSNN 105
>pdb|1ES9|A Chain A, X-Ray Crystal Structure Of R22k Mutant Of The Mammalian
Brain Platelet-Activating Factor Acetylhydrolases
(Paf-Ah)
Length = 232
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G S+VQL W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDSLVQLMHQCEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGTNN 105
>pdb|1FXW|A Chain A, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1WAB|A Chain A, Platelet-Activating Factor Acetylhydrolase
Length = 232
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G S+VQL W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDSLVQLMHQCEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGTNN 105
>pdb|1BWQ|A Chain A, Probing The Substrate Specificity Of The Intracellular
Brain Platelet-Activating Factor Acetylhydrolase
Length = 233
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G S+VQL W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDSLVQLMHQCEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGTNN 105
>pdb|3DT8|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 232
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAP 66
P+ V G +VQL + W + S ++A L G G +++ L L+ +
Sbjct: 39 PEVVFIGDXLVQLMHQSEIWRELFSPLHA-----LNFGIGGDSTQHVLWRLENGELEH-- 91
Query: 67 IQPSLVIVYVGGND 80
I+P +V+V+VG N+
Sbjct: 92 IRPKIVVVWVGTNN 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,155,779
Number of Sequences: 62578
Number of extensions: 340979
Number of successful extensions: 774
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 31
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)