Query 025181
Match_columns 256
No_of_seqs 137 out of 1382
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3035 Isoamyl acetate-hydrol 100.0 1.7E-42 3.8E-47 259.9 19.3 237 1-243 1-238 (245)
2 cd01838 Isoamyl_acetate_hydrol 100.0 3.8E-33 8.3E-38 219.0 19.3 197 8-207 1-199 (199)
3 cd01836 FeeA_FeeB_like SGNH_hy 100.0 3.6E-30 7.7E-35 201.1 19.2 181 6-208 2-190 (191)
4 cd01841 NnaC_like NnaC (CMP-Ne 100.0 3E-30 6.6E-35 198.5 16.3 173 7-207 1-174 (174)
5 cd01821 Rhamnogalacturan_acety 100.0 3.5E-30 7.7E-35 202.2 16.7 184 7-207 1-198 (198)
6 cd01839 SGNH_arylesterase_like 100.0 5.1E-30 1.1E-34 202.9 17.7 182 8-209 1-207 (208)
7 cd01827 sialate_O-acetylestera 100.0 1.4E-29 3E-34 197.3 17.7 177 8-207 2-187 (188)
8 cd04501 SGNH_hydrolase_like_4 100.0 3.1E-29 6.7E-34 194.5 18.0 179 7-207 1-183 (183)
9 cd01835 SGNH_hydrolase_like_3 100.0 7.2E-29 1.6E-33 194.0 17.3 183 7-205 2-191 (193)
10 PRK10528 multifunctional acyl- 100.0 1.5E-28 3.2E-33 191.7 18.7 176 3-209 7-185 (191)
11 cd01828 sialate_O-acetylestera 100.0 4.5E-28 9.7E-33 185.6 17.7 166 9-207 2-168 (169)
12 cd01834 SGNH_hydrolase_like_2 100.0 1.5E-28 3.3E-33 191.6 15.2 186 7-205 2-190 (191)
13 cd01832 SGNH_hydrolase_like_1 100.0 3.7E-28 7.9E-33 188.7 17.1 173 8-205 1-184 (185)
14 cd01820 PAF_acetylesterase_lik 100.0 6E-28 1.3E-32 191.7 18.2 181 5-210 31-213 (214)
15 cd01825 SGNH_hydrolase_peri1 S 100.0 1.6E-28 3.4E-33 191.4 13.8 179 8-210 1-188 (189)
16 cd04502 SGNH_hydrolase_like_7 100.0 8.4E-28 1.8E-32 184.4 17.0 168 8-207 1-171 (171)
17 cd01822 Lysophospholipase_L1_l 100.0 2.2E-27 4.9E-32 183.0 17.4 170 8-208 2-177 (177)
18 cd04506 SGNH_hydrolase_YpmR_li 100.0 1.9E-27 4.1E-32 187.6 14.0 188 8-205 1-203 (204)
19 cd01844 SGNH_hydrolase_like_6 99.9 9.6E-27 2.1E-31 179.5 16.0 172 8-207 1-177 (177)
20 cd01833 XynB_like SGNH_hydrola 99.9 1.9E-26 4E-31 174.5 14.6 151 8-207 2-157 (157)
21 cd01830 XynE_like SGNH_hydrola 99.9 5.4E-26 1.2E-30 179.2 16.5 182 8-204 1-201 (204)
22 cd01829 SGNH_hydrolase_peri2 S 99.9 1.1E-24 2.3E-29 171.3 17.2 176 8-208 1-199 (200)
23 cd01823 SEST_like SEST_like. A 99.9 1.1E-24 2.4E-29 178.0 13.6 197 8-205 2-258 (259)
24 PF13472 Lipase_GDSL_2: GDSL-l 99.9 1.3E-24 2.8E-29 167.0 11.6 176 10-199 1-179 (179)
25 cd01831 Endoglucanase_E_like E 99.9 1E-23 2.2E-28 161.4 14.6 154 8-208 1-169 (169)
26 cd01840 SGNH_hydrolase_yrhL_li 99.9 1.2E-22 2.6E-27 152.3 14.2 149 8-207 1-150 (150)
27 cd00229 SGNH_hydrolase SGNH_hy 99.9 6.9E-21 1.5E-25 146.1 15.3 174 9-205 1-186 (187)
28 PF00657 Lipase_GDSL: GDSL-lik 99.8 1.9E-21 4.1E-26 156.0 7.5 193 9-203 1-234 (234)
29 PF14606 Lipase_GDSL_3: GDSL-l 99.8 1.6E-20 3.5E-25 141.2 11.6 168 6-208 1-178 (178)
30 cd01824 Phospholipase_B_like P 99.8 8.8E-20 1.9E-24 150.0 14.8 170 39-210 83-286 (288)
31 COG2755 TesA Lysophospholipase 99.8 3.6E-19 7.9E-24 141.6 16.0 184 8-211 10-212 (216)
32 cd01826 acyloxyacyl_hydrolase_ 99.8 2.8E-18 6.1E-23 138.6 15.7 164 40-205 94-304 (305)
33 cd01846 fatty_acyltransferase_ 99.8 1.9E-17 4.1E-22 136.1 16.2 195 8-205 1-269 (270)
34 COG2845 Uncharacterized protei 99.7 3.5E-17 7.6E-22 131.0 14.1 180 5-209 115-319 (354)
35 cd01842 SGNH_hydrolase_like_5 99.7 2.5E-16 5.5E-21 116.9 15.1 133 66-207 48-182 (183)
36 cd01847 Triacylglycerol_lipase 99.5 1.4E-13 3E-18 113.8 12.7 198 7-207 2-281 (281)
37 cd01837 SGNH_plant_lipase_like 99.5 1.3E-13 2.8E-18 115.9 10.3 137 68-205 128-313 (315)
38 PRK15381 pathogenicity island 99.5 1.2E-13 2.6E-18 117.9 9.7 195 5-210 141-404 (408)
39 KOG3670 Phospholipase [Lipid t 99.5 7.1E-12 1.5E-16 103.9 17.4 170 41-210 150-353 (397)
40 PLN03156 GDSL esterase/lipase; 99.4 3.6E-11 7.9E-16 101.9 15.8 140 69-209 158-348 (351)
41 PF13839 PC-Esterase: GDSL/SGN 98.9 2.1E-08 4.5E-13 82.0 13.1 141 68-209 100-263 (263)
42 PF04311 DUF459: Protein of un 98.8 2.1E-08 4.5E-13 83.0 8.3 181 4-209 35-239 (327)
43 COG3240 Phospholipase/lecithin 98.2 8.5E-06 1.8E-10 67.9 9.6 131 73-210 166-336 (370)
44 PF08885 GSCFA: GSCFA family; 98.1 3.7E-05 8.1E-10 61.9 10.6 130 67-202 100-250 (251)
45 PF04914 DltD_C: DltD C-termin 98.1 8.5E-05 1.8E-09 53.6 10.6 95 99-209 35-129 (130)
46 PF07611 DUF1574: Protein of u 98.1 0.00027 5.8E-09 59.3 14.7 179 5-207 62-343 (345)
47 PF03629 DUF303: Domain of unk 95.7 0.18 3.9E-06 41.0 10.4 109 68-209 143-254 (255)
48 PF14286 DHHW: DHHW protein 92.0 1.2 2.5E-05 38.6 8.6 102 99-208 153-254 (378)
49 COG3966 DltD Protein involved 88.6 4.7 0.0001 34.2 8.9 95 100-210 295-390 (415)
50 PF05141 DIT1_PvcA: Pyoverdine 86.2 5.5 0.00012 32.9 8.0 73 90-173 33-109 (278)
51 PRK15180 Vi polysaccharide bio 85.4 5.5 0.00012 35.4 8.0 60 150-209 211-273 (831)
52 TIGR02171 Fb_sc_TIGR02171 Fibr 83.9 11 0.00024 36.1 9.8 103 99-209 807-910 (912)
53 KOG1388 Attractin and platelet 81.0 0.13 2.9E-06 39.9 -3.0 145 41-209 54-200 (217)
54 PF12683 DUF3798: Protein of u 80.8 13 0.00029 30.3 7.9 105 40-173 67-172 (275)
55 PF13380 CoA_binding_2: CoA bi 80.5 17 0.00038 25.5 8.9 105 7-170 1-108 (116)
56 TIGR02717 AcCoA-syn-alpha acet 74.5 16 0.00034 32.6 7.5 21 152-172 109-129 (447)
57 KOG0084 GTPase Rab1/YPT1, smal 69.5 36 0.00078 26.5 7.4 101 8-124 11-123 (205)
58 PF07745 Glyco_hydro_53: Glyco 69.2 72 0.0016 27.2 10.3 140 67-209 124-282 (332)
59 PF03796 DnaB_C: DnaB-like hel 67.0 20 0.00044 29.0 6.1 66 99-173 114-179 (259)
60 PF14587 Glyco_hydr_30_2: O-Gl 64.7 57 0.0012 28.3 8.4 109 101-211 105-217 (384)
61 cd04121 Rab40 Rab40 subfamily. 64.2 64 0.0014 24.8 11.8 43 67-124 77-119 (189)
62 PF00056 Ldh_1_N: lactate/mala 62.8 21 0.00045 26.1 4.9 49 67-124 68-120 (141)
63 PF06935 DUF1284: Protein of u 61.4 16 0.00035 25.2 3.9 29 96-125 4-32 (103)
64 KOG0094 GTPase Rab6/YPT6/Ryh1, 60.5 81 0.0018 24.7 10.2 54 54-123 81-136 (221)
65 PF02581 TMP-TENI: Thiamine mo 59.9 38 0.00082 25.8 6.2 43 147-195 39-82 (180)
66 PF03808 Glyco_tran_WecB: Glyc 59.2 19 0.00042 27.3 4.4 64 5-78 47-111 (172)
67 KOG0078 GTP-binding protein SE 57.5 77 0.0017 24.9 7.3 59 96-172 97-156 (207)
68 KOG1344 Predicted histone deac 57.4 21 0.00045 28.5 4.2 75 46-124 225-300 (324)
69 cd06533 Glyco_transf_WecG_TagA 56.3 25 0.00054 26.6 4.6 63 6-78 46-109 (171)
70 PLN02629 powdery mildew resist 55.6 6.5 0.00014 34.0 1.4 59 68-126 205-275 (387)
71 PF00071 Ras: Ras family; Int 55.5 38 0.00083 24.6 5.5 73 67-172 70-143 (162)
72 cd02067 B12-binding B12 bindin 55.3 68 0.0015 22.3 9.1 65 37-126 27-92 (119)
73 PF03618 Kinase-PPPase: Kinase 55.2 55 0.0012 26.7 6.5 26 151-176 64-89 (255)
74 KOG0091 GTPase Rab39, small G 54.7 93 0.002 23.7 14.5 55 155-223 138-192 (213)
75 PRK00066 ldh L-lactate dehydro 54.7 42 0.00091 28.3 6.1 50 67-125 72-125 (315)
76 smart00852 MoCF_biosynth Proba 54.4 53 0.0011 23.6 5.9 66 9-79 2-68 (135)
77 cd00300 LDH_like L-lactate deh 54.2 39 0.00085 28.2 5.8 51 67-125 65-118 (300)
78 PF00994 MoCF_biosynth: Probab 54.1 13 0.00029 27.1 2.7 64 9-78 2-66 (144)
79 COG0352 ThiE Thiamine monophos 52.9 18 0.0004 28.5 3.4 38 150-194 51-90 (211)
80 COG1058 CinA Predicted nucleot 52.7 50 0.0011 27.0 5.9 65 8-78 5-70 (255)
81 PLN00135 malate dehydrogenase 52.4 49 0.0011 27.8 6.1 49 67-124 57-110 (309)
82 cd00885 cinA Competence-damage 52.0 35 0.00076 25.9 4.7 65 8-78 3-68 (170)
83 PRK08006 replicative DNA helic 52.0 51 0.0011 29.6 6.4 53 112-173 333-385 (471)
84 PRK03670 competence damage-ind 51.3 45 0.00098 27.2 5.5 66 8-78 4-70 (252)
85 PF05872 DUF853: Bacterial pro 51.1 64 0.0014 28.8 6.6 52 65-127 251-302 (502)
86 TIGR00177 molyb_syn molybdenum 50.1 54 0.0012 24.0 5.4 66 8-78 4-76 (144)
87 PRK05086 malate dehydrogenase; 50.0 54 0.0012 27.6 6.0 50 68-125 69-121 (312)
88 PRK08840 replicative DNA helic 49.4 64 0.0014 28.9 6.6 51 114-173 328-378 (464)
89 PF06309 Torsin: Torsin; Inte 49.4 77 0.0017 22.8 5.8 68 42-119 58-126 (127)
90 PRK08506 replicative DNA helic 49.3 70 0.0015 28.7 6.9 52 113-173 300-351 (472)
91 cd05290 LDH_3 A subgroup of L- 49.0 61 0.0013 27.2 6.1 49 67-124 67-121 (307)
92 PRK06512 thiamine-phosphate py 48.1 21 0.00046 28.4 3.1 43 147-195 54-97 (221)
93 TIGR01763 MalateDH_bact malate 48.0 59 0.0013 27.3 5.9 51 67-125 68-121 (305)
94 TIGR01771 L-LDH-NAD L-lactate 47.1 55 0.0012 27.4 5.6 51 67-125 63-116 (299)
95 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 46.7 1.5E+02 0.0032 23.6 10.0 44 67-124 71-114 (222)
96 TIGR01772 MDH_euk_gproteo mala 46.5 70 0.0015 27.0 6.1 51 67-125 66-119 (312)
97 PRK08999 hypothetical protein; 46.4 1.2E+02 0.0026 25.3 7.6 46 145-196 169-215 (312)
98 PF00072 Response_reg: Respons 46.2 46 0.00099 22.3 4.3 40 67-125 42-81 (112)
99 PRK06904 replicative DNA helic 46.2 75 0.0016 28.6 6.6 27 147-173 357-383 (472)
100 cd01338 MDH_choloroplast_like 45.6 76 0.0017 26.9 6.2 49 67-124 77-130 (322)
101 cd05293 LDH_1 A subgroup of L- 45.2 60 0.0013 27.3 5.5 49 68-125 71-123 (312)
102 cd01337 MDH_glyoxysomal_mitoch 45.0 71 0.0015 26.9 5.9 51 67-125 67-120 (310)
103 cd05291 HicDH_like L-2-hydroxy 44.3 72 0.0016 26.7 5.9 50 67-124 67-119 (306)
104 TIGR01759 MalateDH-SF1 malate 44.0 79 0.0017 26.8 6.1 49 67-124 78-131 (323)
105 PRK01215 competence damage-ind 43.9 74 0.0016 26.1 5.7 69 4-78 3-72 (264)
106 PRK07004 replicative DNA helic 43.1 98 0.0021 27.7 6.8 27 147-173 347-373 (460)
107 TIGR03600 phage_DnaB phage rep 42.7 1.1E+02 0.0024 26.8 7.1 59 105-173 295-353 (421)
108 cd00984 DnaB_C DnaB helicase C 42.6 1.2E+02 0.0027 23.9 6.9 50 115-173 123-172 (242)
109 TIGR00696 wecB_tagA_cpsF bacte 42.4 57 0.0012 24.9 4.6 62 6-77 48-109 (177)
110 PRK10100 DNA-binding transcrip 42.2 1.6E+02 0.0036 23.1 7.4 41 68-126 52-92 (216)
111 TIGR02667 moaB_proteo molybden 41.9 77 0.0017 23.8 5.2 67 6-78 6-73 (163)
112 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 41.7 1.5E+02 0.0033 22.4 10.5 44 67-124 75-118 (182)
113 COG0039 Mdh Malate/lactate deh 41.5 1.1E+02 0.0025 25.8 6.5 50 67-125 68-121 (313)
114 PF02310 B12-binding: B12 bind 41.1 1E+02 0.0022 21.2 5.6 43 66-125 49-91 (121)
115 PRK05748 replicative DNA helic 41.1 1.2E+02 0.0027 26.9 7.2 52 114-173 313-364 (448)
116 PF09363 XFP_C: XFP C-terminal 40.9 79 0.0017 24.8 5.1 43 66-126 32-74 (203)
117 PRK08154 anaerobic benzoate ca 40.5 1E+02 0.0022 25.8 6.3 55 98-176 116-170 (309)
118 PF08759 DUF1792: Domain of un 40.4 1.3E+02 0.0029 24.0 6.3 70 50-125 102-177 (225)
119 PRK03512 thiamine-phosphate py 39.6 45 0.00097 26.3 3.7 42 148-195 47-89 (211)
120 PF01341 Glyco_hydro_6: Glycos 39.5 2.1E+02 0.0046 24.0 7.8 79 92-173 85-166 (298)
121 PRK09417 mogA molybdenum cofac 39.4 1.2E+02 0.0026 23.6 6.0 67 7-78 6-76 (193)
122 cd00704 MDH Malate dehydrogena 39.3 1E+02 0.0022 26.2 6.0 49 67-124 75-128 (323)
123 COG2333 ComEC Predicted hydrol 39.0 1.3E+02 0.0029 25.1 6.6 66 5-84 181-248 (293)
124 cd00758 MoCF_BD MoCF_BD: molyb 38.9 1.1E+02 0.0023 21.9 5.4 65 8-78 3-68 (133)
125 PF08076 TetM_leader: Tetracyc 38.8 15 0.00033 18.2 0.6 9 241-249 9-17 (28)
126 PRK12772 bifunctional flagella 38.5 53 0.0011 30.6 4.5 106 96-207 494-604 (609)
127 KOG1496 Malate dehydrogenase [ 38.0 74 0.0016 25.9 4.6 60 114-173 122-181 (332)
128 PTZ00063 histone deacetylase; 37.8 3E+02 0.0064 24.6 11.8 40 190-229 352-391 (436)
129 PRK13109 flhB flagellar biosyn 37.2 57 0.0012 28.1 4.2 106 96-207 240-350 (358)
130 PHA02542 41 41 helicase; Provi 37.1 1.3E+02 0.0029 27.0 6.7 67 101-173 286-353 (473)
131 TIGR01756 LDH_protist lactate 36.6 1.1E+02 0.0023 25.9 5.7 49 67-124 59-112 (313)
132 PLN02602 lactate dehydrogenase 36.2 1.1E+02 0.0023 26.4 5.7 51 67-125 104-157 (350)
133 cd02068 radical_SAM_B12_BD B12 36.1 1E+02 0.0022 21.7 4.9 42 67-126 38-79 (127)
134 PRK12721 secretion system appa 35.9 64 0.0014 27.7 4.3 103 96-207 231-341 (349)
135 PTZ00325 malate dehydrogenase; 35.8 99 0.0022 26.2 5.4 50 67-124 75-127 (321)
136 PF09949 DUF2183: Uncharacteri 35.7 23 0.0005 24.3 1.3 29 5-37 63-91 (100)
137 PRK13505 formate--tetrahydrofo 35.5 3.6E+02 0.0078 24.9 10.1 60 65-125 319-383 (557)
138 COG0123 AcuC Deacetylases, inc 35.4 1.2E+02 0.0027 25.9 6.0 73 47-122 217-290 (340)
139 cd08778 Death_TNFRSF21 Death d 34.9 17 0.00037 22.7 0.6 55 155-209 5-71 (84)
140 KOG3662 Cell division control 34.6 3.2E+02 0.007 24.1 9.0 47 66-121 91-137 (410)
141 PRK02615 thiamine-phosphate py 34.6 2.4E+02 0.0052 24.3 7.5 43 147-195 184-227 (347)
142 PRK08760 replicative DNA helic 34.5 1.4E+02 0.003 26.9 6.4 27 147-173 362-388 (476)
143 PRK05442 malate dehydrogenase; 34.4 1.5E+02 0.0032 25.2 6.3 49 67-124 79-132 (326)
144 PRK06298 type III secretion sy 34.2 69 0.0015 27.6 4.3 107 96-208 232-343 (356)
145 KOG0393 Ras-related small GTPa 33.5 1.3E+02 0.0027 23.6 5.2 44 66-123 74-117 (198)
146 TIGR00693 thiE thiamine-phosph 33.4 2.2E+02 0.0047 21.7 6.9 41 149-195 42-83 (196)
147 PRK10128 2-keto-3-deoxy-L-rham 33.4 1.9E+02 0.0042 23.8 6.6 57 50-113 154-210 (267)
148 PF13481 AAA_25: AAA domain; P 32.8 1.2E+02 0.0026 22.9 5.2 59 100-170 127-185 (193)
149 PF02896 PEP-utilizers_C: PEP- 32.7 72 0.0016 26.7 4.0 51 73-125 200-258 (293)
150 TIGR01404 FlhB_rel_III type II 32.7 74 0.0016 27.3 4.2 76 96-173 230-310 (342)
151 PLN00106 malate dehydrogenase 32.3 1.6E+02 0.0035 25.0 6.2 50 67-125 85-138 (323)
152 cd04131 Rnd Rnd subfamily. Th 32.3 1.6E+02 0.0035 22.1 5.8 44 67-124 71-114 (178)
153 PF05762 VWA_CoxE: VWA domain 32.1 2.5E+02 0.0055 22.1 9.7 24 101-126 167-190 (222)
154 PRK05636 replicative DNA helic 31.9 1.6E+02 0.0035 26.8 6.4 27 147-173 398-424 (505)
155 COG1943 Transposase and inacti 31.7 70 0.0015 23.2 3.4 25 146-170 29-53 (136)
156 TIGR01758 MDH_euk_cyt malate d 31.7 1.6E+02 0.0036 24.9 6.1 49 67-124 74-127 (324)
157 TIGR01417 PTS_I_fam phosphoeno 31.5 1.1E+02 0.0023 28.4 5.2 51 73-125 447-505 (565)
158 PF09370 TIM-br_sig_trns: TIM- 31.4 1.5E+02 0.0032 24.4 5.4 55 67-124 169-223 (268)
159 PRK08156 type III secretion sy 31.2 81 0.0018 27.2 4.2 108 96-209 226-338 (361)
160 PRK12468 flhB flagellar biosyn 31.2 87 0.0019 27.3 4.4 108 96-209 238-350 (386)
161 cd01339 LDH-like_MDH L-lactate 30.9 1.2E+02 0.0026 25.3 5.2 51 67-125 65-118 (300)
162 PRK09108 type III secretion sy 30.4 86 0.0019 27.0 4.2 106 96-208 233-343 (353)
163 cd05294 LDH-like_MDH_nadp A la 30.3 2.2E+02 0.0048 23.9 6.7 49 67-124 71-123 (309)
164 PRK12290 thiE thiamine-phospha 30.1 71 0.0015 28.3 3.7 42 147-195 244-287 (437)
165 COG1377 FlhB Flagellar biosynt 29.1 90 0.002 26.9 4.1 108 96-212 238-353 (363)
166 cd02070 corrinoid_protein_B12- 29.0 2.7E+02 0.0059 21.5 8.0 64 37-125 110-175 (201)
167 PRK12773 flhB flagellar biosyn 28.9 94 0.002 28.8 4.3 105 96-206 529-639 (646)
168 PRK15029 arginine decarboxylas 28.8 3.3E+02 0.0072 26.3 8.1 93 8-125 2-95 (755)
169 PF06057 VirJ: Bacterial virul 28.4 1.1E+02 0.0024 23.8 4.1 33 92-124 44-76 (192)
170 cd02071 MM_CoA_mut_B12_BD meth 28.4 1.9E+02 0.0041 20.3 5.2 41 66-123 48-89 (122)
171 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 28.1 3.1E+02 0.0068 21.9 10.0 43 67-123 83-125 (232)
172 PLN00112 malate dehydrogenase 27.8 1.5E+02 0.0032 26.5 5.4 48 68-124 176-228 (444)
173 PRK03604 moaC bifunctional mol 27.4 1.5E+02 0.0033 25.0 5.1 65 9-78 160-225 (312)
174 PF06866 DUF1256: Protein of u 27.2 2.8E+02 0.006 21.0 6.5 56 68-123 24-94 (163)
175 cd03770 SR_TndX_transposase Se 27.2 2E+02 0.0044 20.7 5.3 54 99-172 54-107 (140)
176 KOG1495 Lactate dehydrogenase 27.1 2.2E+02 0.0048 23.7 5.7 52 66-125 86-140 (332)
177 TIGR00328 flhB flagellar biosy 27.1 1E+02 0.0023 26.4 4.2 106 96-207 231-341 (347)
178 COG4030 Uncharacterized protei 27.0 40 0.00086 27.0 1.5 23 102-124 269-291 (315)
179 KOG2792 Putative cytochrome C 27.0 3.6E+02 0.0078 22.2 8.0 77 68-167 138-226 (280)
180 PF08423 Rad51: Rad51; InterP 27.0 3.4E+02 0.0075 22.0 8.6 76 95-176 115-190 (256)
181 TIGR01757 Malate-DH_plant mala 26.9 1.7E+02 0.0037 25.6 5.5 48 68-124 120-172 (387)
182 PRK05595 replicative DNA helic 26.8 2E+02 0.0044 25.5 6.1 27 147-173 334-360 (444)
183 PRK00549 competence damage-ind 26.5 1.7E+02 0.0037 25.8 5.5 65 8-78 4-69 (414)
184 PLN02199 shikimate kinase 26.4 2.5E+02 0.0053 23.7 6.1 51 102-176 89-139 (303)
185 cd01336 MDH_cytoplasmic_cytoso 26.3 2.4E+02 0.0052 23.9 6.2 50 67-124 77-130 (325)
186 TIGR00665 DnaB replicative DNA 26.3 2.5E+02 0.0054 24.7 6.6 27 147-173 328-354 (434)
187 PRK05339 PEP synthetase regula 26.2 3.8E+02 0.0081 22.2 7.7 59 151-209 70-132 (269)
188 PRK06223 malate dehydrogenase; 26.1 1.3E+02 0.0029 25.0 4.6 50 67-124 69-121 (307)
189 cd00650 LDH_MDH_like NAD-depen 25.8 2.3E+02 0.005 23.0 5.9 51 67-125 69-122 (263)
190 cd04133 Rop_like Rop subfamily 25.8 2.3E+02 0.005 21.3 5.6 43 67-123 71-113 (176)
191 COG0123 AcuC Deacetylases, inc 25.6 4.3E+02 0.0093 22.7 8.7 72 91-170 216-288 (340)
192 cd03412 CbiK_N Anaerobic cobal 25.6 2.4E+02 0.0052 20.0 5.3 37 71-122 3-39 (127)
193 smart00174 RHO Rho (Ras homolo 25.4 2.5E+02 0.0054 20.5 5.7 44 67-124 68-111 (174)
194 PF03709 OKR_DC_1_N: Orn/Lys/A 25.4 1E+02 0.0022 21.5 3.2 27 99-125 51-77 (115)
195 COG0552 FtsY Signal recognitio 25.4 4.4E+02 0.0094 22.6 8.1 36 70-122 139-174 (340)
196 PRK11177 phosphoenolpyruvate-p 25.1 1.2E+02 0.0026 28.1 4.5 51 73-125 448-506 (575)
197 KOG3446 NADH:ubiquinone oxidor 24.3 2E+02 0.0043 19.1 4.1 37 95-131 29-65 (97)
198 cd05292 LDH_2 A subgroup of L- 24.3 2.4E+02 0.0053 23.6 5.9 50 67-124 66-118 (308)
199 PRK06749 replicative DNA helic 24.2 3.3E+02 0.0072 24.1 6.9 27 147-173 323-349 (428)
200 PLN02898 HMP-P kinase/thiamin- 24.2 3.8E+02 0.0083 24.2 7.5 42 148-195 335-377 (502)
201 cd07182 RNaseH_typeII_bacteria 24.1 3.3E+02 0.0072 20.8 6.9 59 151-209 78-140 (179)
202 PF12242 Eno-Rase_NADH_b: NAD( 23.9 91 0.002 20.3 2.5 29 6-40 39-67 (78)
203 PF08495 FIST: FIST N domain; 23.9 1.8E+02 0.0039 22.0 4.8 39 68-125 1-39 (198)
204 PRK10046 dpiA two-component re 23.8 3E+02 0.0065 21.4 6.1 40 67-125 49-88 (225)
205 TIGR00361 ComEC_Rec2 DNA inter 23.6 2.5E+02 0.0054 26.5 6.4 62 6-81 574-636 (662)
206 TIGR02841 spore_YyaC putative 23.6 2.2E+02 0.0049 20.8 4.7 27 97-123 44-70 (140)
207 PF05822 UMPH-1: Pyrimidine 5' 23.4 85 0.0018 25.5 2.8 16 5-20 178-193 (246)
208 PF07755 DUF1611: Protein of u 23.0 3.6E+02 0.0077 22.7 6.4 23 150-172 272-294 (301)
209 PF02283 CobU: Cobinamide kina 22.6 3.4E+02 0.0074 20.4 6.0 53 96-162 97-155 (167)
210 PRK05702 flhB flagellar biosyn 22.2 1.5E+02 0.0033 25.5 4.3 107 96-208 238-349 (359)
211 PF13242 Hydrolase_like: HAD-h 22.2 48 0.001 20.9 1.0 13 6-18 21-34 (75)
212 PRK11061 fused phosphoenolpyru 22.0 2E+02 0.0043 27.7 5.4 52 73-126 614-673 (748)
213 PRK13808 adenylate kinase; Pro 21.9 2.3E+02 0.0051 24.2 5.3 19 158-176 19-37 (333)
214 TIGR00200 cinA_nterm competenc 21.9 2.5E+02 0.0055 24.8 5.7 65 8-78 4-69 (413)
215 COG2197 CitB Response regulato 21.9 1.9E+02 0.004 22.7 4.5 42 66-126 44-85 (211)
216 PRK03692 putative UDP-N-acetyl 21.8 1.6E+02 0.0035 23.8 4.2 12 66-77 155-166 (243)
217 PRK03673 hypothetical protein; 21.7 2.2E+02 0.0048 25.0 5.2 68 6-79 3-71 (396)
218 PF08902 DUF1848: Domain of un 21.6 4.1E+02 0.009 21.9 6.4 77 93-172 127-203 (266)
219 PRK15454 ethanol dehydrogenase 21.2 3.2E+02 0.007 23.8 6.2 66 6-78 49-116 (395)
220 TIGR02026 BchE magnesium-proto 20.8 6.3E+02 0.014 22.8 9.6 43 66-126 61-103 (497)
221 COG3643 Glutamate formiminotra 20.5 69 0.0015 25.9 1.7 53 200-253 146-200 (302)
222 PRK09165 replicative DNA helic 20.3 4E+02 0.0086 24.2 6.7 27 147-173 366-392 (497)
223 PRK06321 replicative DNA helic 20.3 3.7E+02 0.008 24.2 6.5 27 147-173 362-388 (472)
224 COG2845 Uncharacterized protei 20.2 4.4E+02 0.0096 22.5 6.3 78 91-170 154-232 (354)
No 1
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=259.95 Aligned_cols=237 Identities=55% Similarity=0.920 Sum_probs=210.5
Q ss_pred CCCCCCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 1 MVGPARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 1 ~~~p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
||+|-+++|++||||||+.++..++|...|++.|.++.++.++|++|++|+..+..+.+.++......|.+|+|.+|+||
T Consensus 1 ~~g~~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRwALkvL~~ifp~~~s~~p~lvtVffGaND 80 (245)
T KOG3035|consen 1 MVGPMRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRWALKVLPEIFPKGSSIQPVLVTVFFGAND 80 (245)
T ss_pred CCCcccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhccccccCCceEEEEEecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999998777778999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCC-ccchhhhhhhHHHHHHHHHHHHHH
Q 025181 81 SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGT-SEIFSELVRTNELCQKYSDACINL 159 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~~l~~~ 159 (256)
.+.+...+..+..++++|++|+++++..++...|..+||++++||+.+....+.. .+.....++.|+....|+++..++
T Consensus 81 s~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~l 160 (245)
T KOG3035|consen 81 SCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANL 160 (245)
T ss_pred ccCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHH
Confidence 9999888888999999999999999999999999999999999999887444333 333445668999999999999999
Q ss_pred HHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCCCCCccccCCC
Q 025181 160 CHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPSLHWKSMPTEFSEDSPYDLVAASGE 239 (256)
Q Consensus 160 ~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 239 (256)
|++.|+.+||+++.+.+..+|.+.++.||+|+|++||+++.+.|++.|+++.| ..+++++|.+||. +....++.
T Consensus 161 a~e~~l~~vdlws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~ea~~--~~~~k~lp~~fp~----~~~~~d~k 234 (245)
T KOG3035|consen 161 AQEIGLYVVDLWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILKVLKEAWP--SPSPKNLPLEFPH----RIVLADGK 234 (245)
T ss_pred HHHhCCeeeeHHhhhhhcccHHHHHhccceeeccccchhhHHHHHHHHHhccC--CCCcccCCccCCc----cccccccc
Confidence 99999999999999999999998899999999999999999999999999844 4445888888876 33344454
Q ss_pred cccC
Q 025181 240 RTLN 243 (256)
Q Consensus 240 ~~~~ 243 (256)
+.++
T Consensus 235 ~~~~ 238 (245)
T KOG3035|consen 235 NTLS 238 (245)
T ss_pred chhh
Confidence 4443
No 2
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=100.00 E-value=3.8e-33 Score=219.03 Aligned_cols=197 Identities=46% Similarity=0.824 Sum_probs=158.6
Q ss_pred eEEEEcccccccccCCC--ChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNG--GWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~--~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
||+++|||+|+|.+... +|...|++.++..+++.|.|++|.++..+..++++.+......+||+|+|++|+||.....
T Consensus 1 ~i~~~GDSit~g~~~~~~~~~~~~l~~~~~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 80 (199)
T cd01838 1 KIVLFGDSITQFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPG 80 (199)
T ss_pred CEEEecCcccccccCCCCCcHHHHHHHHhcchhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCccccCCC
Confidence 69999999999776544 8999999999877899999999999999999998877431112899999999999996532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGV 165 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v 165 (256)
.. ...+.+.|.++++++++.+++.+|+++|++++++|....................++.++.||+.++++|+++++
T Consensus 81 ~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 157 (199)
T cd01838 81 QP---QHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGV 157 (199)
T ss_pred CC---CcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCC
Confidence 21 235689999999999999999889999999999997654322110000112235677889999999999999999
Q ss_pred eEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 166 KVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 166 ~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
+|||+++.+.....+...++.||+|||++||+.||+.|++.|
T Consensus 158 ~~iD~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~~ 199 (199)
T cd01838 158 PVIDLWTAMQEEAGWLESLLTDGLHFSSKGYELLFEEIVKVI 199 (199)
T ss_pred cEEEHHHHHHhccCchhhhcCCCCCcCHhHHHHHHHHHHhhC
Confidence 999999998876555556678999999999999999998764
No 3
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=3.6e-30 Score=201.09 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=146.5
Q ss_pred CceEEEEcccccccccC---CCChHHHHHHHhhc----cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFS---NGGWGAILSDIYAR----KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~---~~~~~~~l~~~~~~----~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
..+|+++|||+|+|.+. ..+|...+++.+.+ .+++.|.|++|.++.++..++++ + ...+||+|+|++|+
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~-~---~~~~pd~Vii~~G~ 77 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP-L---PETRFDVAVISIGV 77 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh-c---ccCCCCEEEEEecc
Confidence 45899999999986542 34688888877764 56889999999999999998887 2 35799999999999
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHH
Q 025181 79 NDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACIN 158 (256)
Q Consensus 79 ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~ 158 (256)
||+.. ..+.++|.+++.++++.+++.+|+++|+++++||+......+. ......++...++|+.+++
T Consensus 78 ND~~~--------~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~ 144 (191)
T cd01836 78 NDVTH--------LTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQ-----PLRWLLGRRARLLNRALER 144 (191)
T ss_pred cCcCC--------CCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 99854 3457999999999999999988999999999988753221110 0112345678899999999
Q ss_pred HHHHh-CCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 159 LCHEL-GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 159 ~~~~~-~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
+|+++ ++.|+|++..+.. ..+..||+|||++||++||+.+.+.|+
T Consensus 145 ~a~~~~~~~~id~~~~~~~-----~~~~~DglHpn~~Gy~~~a~~l~~~i~ 190 (191)
T cd01836 145 LASEAPRVTLLPATGPLFP-----ALFASDGFHPSAAGYAVWAEALAPAIA 190 (191)
T ss_pred HHhcCCCeEEEecCCccch-----hhccCCCCCCChHHHHHHHHHHHHHHh
Confidence 99999 9999999987651 224579999999999999999999986
No 4
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.97 E-value=3e-30 Score=198.54 Aligned_cols=173 Identities=25% Similarity=0.316 Sum_probs=139.2
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHP 86 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~ 86 (256)
++|+++|||+|+|... .......+.+.|.|++|+++.++..+++..+. ..+||+|+|++|+||+..
T Consensus 1 ~~iv~~GdS~t~~~~~--------~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~---~~~pd~v~i~~G~ND~~~--- 66 (174)
T cd01841 1 KNIVFIGDSLFEGWPL--------YEAEGKGKTVNNLGIAGISSRQYLEHIEPQLI---QKNPSKVFLFLGTNDIGK--- 66 (174)
T ss_pred CCEEEEcchhhhcCch--------hhhccCCCeEEecccccccHHHHHHHHHHHHH---hcCCCEEEEEeccccCCC---
Confidence 3799999999984321 11114467899999999999999999965542 578999999999999854
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCe
Q 025181 87 SGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVK 166 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~ 166 (256)
..+.++|.++++++++.+++..|+++|+++++||....... ....+..+.+||++++++|++++++
T Consensus 67 -----~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~---------~~~~~~~~~~~n~~l~~~a~~~~~~ 132 (174)
T cd01841 67 -----EVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEI---------KTRSNTRIQRLNDAIKELAPELGVT 132 (174)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCccccc---------ccCCHHHHHHHHHHHHHHHHHCCCE
Confidence 23689999999999999999889999999999887543210 1134677899999999999999999
Q ss_pred EEechhHhhcccc-cccccccccccCChhHHHHHHHHHHHHH
Q 025181 167 VVDLFTAIQKRDD-WKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 167 ~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
|||++..+.+... ....+..||+|||++||++||+.|.++|
T Consensus 133 ~id~~~~~~~~~~~~~~~~~~DglH~n~~Gy~~~a~~l~~~~ 174 (174)
T cd01841 133 FIDLNDVLVDEFGNLKKEYTTDGLHFNPKGYQKLLEILEEYL 174 (174)
T ss_pred EEEcHHHHcCCCCCccccccCCCcccCHHHHHHHHHHHHhhC
Confidence 9999999876432 2234668999999999999999998764
No 5
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=99.97 E-value=3.5e-30 Score=202.23 Aligned_cols=184 Identities=22% Similarity=0.284 Sum_probs=143.1
Q ss_pred ceEEEEcccccccccCC---CChHHHHHHHhhccccEeecCCCCCchHHHHH--HhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 7 PQFVLFGSSIVQLSFSN---GGWGAILSDIYARKADILLRGYYGWNSRRALQ--VLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~---~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~--~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
++|+++|||+|+|.+.. .+|...|++.+...+.+.|.|++|.++..+.. +++..+.. ..+||+|+|++|+||+
T Consensus 1 ~~i~~~GDS~t~G~~~~~~~~~w~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~--~~~pdlVii~~G~ND~ 78 (198)
T cd01821 1 PTIFLAGDSTVADYDPGAPQAGWGQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKL--IKPGDYVLIQFGHNDQ 78 (198)
T ss_pred CEEEEEecCCcccCCCCCCCCChHHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhh--CCCCCEEEEECCCCCC
Confidence 58999999999977653 79999999999878899999999999988764 55555531 1379999999999998
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 025181 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~ 161 (256)
..... ....+.++|.+++.++++.+++. ++.+|+++++|........ ..+..+.+||++++++|+
T Consensus 79 ~~~~~---~~~~~~~~~~~nl~~ii~~~~~~--~~~~il~tp~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~ 143 (198)
T cd01821 79 KPKDP---EYTEPYTTYKEYLRRYIAEARAK--GATPILVTPVTRRTFDEGG----------KVEDTLGDYPAAMRELAA 143 (198)
T ss_pred CCCCC---CCCCcHHHHHHHHHHHHHHHHHC--CCeEEEECCccccccCCCC----------cccccchhHHHHHHHHHH
Confidence 65321 12356899999999999999984 5889999888743211100 234567899999999999
Q ss_pred HhCCeEEechhHhhcc----c--ccc---cccccccccCChhHHHHHHHHHHHHH
Q 025181 162 ELGVKVVDLFTAIQKR----D--DWK---NACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 162 ~~~v~~vD~~~~~~~~----~--~~~---~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
+++++|+|++..+... + ... ..+..||+|||++||+.||+.|++.|
T Consensus 144 ~~~~~~vD~~~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G~~~~a~~i~~~~ 198 (198)
T cd01821 144 EEGVPLIDLNAASRALYEAIGPEKSKKYFPEGPGDNTHFSEKGADVVARLVAEEL 198 (198)
T ss_pred HhCCCEEecHHHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 9999999999986431 1 111 24568999999999999999998764
No 6
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=5.1e-30 Score=202.88 Aligned_cols=182 Identities=19% Similarity=0.310 Sum_probs=143.9
Q ss_pred eEEEEcccccccccC--------CCChHHHHHHHhhcc---ccEeecCCCCCchH---------HHHHHhhhhCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFS--------NGGWGAILSDIYARK---ADILLRGYYGWNSR---------RALQVLDQVFPKDAPI 67 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~--------~~~~~~~l~~~~~~~---~~v~n~g~~G~~s~---------~~~~~~~~~~~~~~~~ 67 (256)
+|+++|||+|+|... ..+|+..|++.+... +++.|.|++|.++. ..+.++.+.+.. ..
T Consensus 1 ~I~~~GDSiT~G~~~~~~~~~~~~~~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~--~~ 78 (208)
T cd01839 1 TILCFGDSNTWGIIPDTGGRYPFEDRWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES--HS 78 (208)
T ss_pred CEEEEecCcccCCCCCCCCcCCcCCCCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHh--CC
Confidence 589999999986531 347999999999766 88999999999985 235566665531 25
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-----CCceEEEEcCCCCChhhhhcCCccchhhh
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-----CATRIIFLSTPPVDEARINQGTSEIFSEL 142 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-----~~~~vi~~~~~p~~~~~~~~~~~~~~~~~ 142 (256)
+||+|+|++|+||+... ...+.++|.++++++++.+++.. |+++|+++++||+..... ......
T Consensus 79 ~pd~vii~lGtND~~~~------~~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~-----~~~~~~ 147 (208)
T cd01839 79 PLDLVIIMLGTNDLKSY------FNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKG-----SLAGKF 147 (208)
T ss_pred CCCEEEEeccccccccc------cCCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCcccc-----chhhhh
Confidence 89999999999998642 23467999999999999999976 789999999998721111 001122
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 143 VRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 143 ~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
...++..++|++.++++|+++++.|+|++..+.. +..||+|||++||+.||+.|++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~~~~~iD~~~~~~~-------~~~DGvH~~~~G~~~~a~~l~~~i~~ 207 (208)
T cd01839 148 AGAEEKSKGLADAYRALAEELGCHFFDAGSVGST-------SPVDGVHLDADQHAALGQALASVIRA 207 (208)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCEEcHHHHhcc-------CCCCccCcCHHHHHHHHHHHHHHHhh
Confidence 2456778999999999999999999999876543 34799999999999999999999875
No 7
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=1.4e-29 Score=197.28 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=140.5
Q ss_pred eEEEEcccccccccC--CCChHHHHHHHhhccccEeecCCCCCchHHH-------HHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFS--NGGWGAILSDIYARKADILLRGYYGWNSRRA-------LQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~-------~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
||+++|||+|+|... ..+|+..|++.++..+.+.|.|++|.++... ..++...+ ..+||+|+|++|+
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~----~~~pd~Vii~~G~ 77 (188)
T cd01827 2 KVACVGNSITEGAGLRAYDSYPSPLAQMLGDGYEVGNFGKSARTVLNKGDHPYMNEERYKNAL----AFNPNIVIIKLGT 77 (188)
T ss_pred eEEEEecccccccCCCCCCchHHHHHHHhCCCCeEEeccCCcceeecCCCcCccchHHHHHhh----ccCCCEEEEEccc
Confidence 799999999996653 5689999999998778899999999987432 12222222 4689999999999
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHH
Q 025181 79 NDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACIN 158 (256)
Q Consensus 79 ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~ 158 (256)
||..... ....+.|.++++++++.+++..|+++|++++++|........ ...+...+.+++++++
T Consensus 78 ND~~~~~------~~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~---------~~~~~~~~~~~~~~~~ 142 (188)
T cd01827 78 NDAKPQN------WKYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGGF---------INDNIIKKEIQPMIDK 142 (188)
T ss_pred CCCCCCC------CccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCc---------cchHHHHHHHHHHHHH
Confidence 9986422 234689999999999999998899999999988864322110 1234556789999999
Q ss_pred HHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 159 LCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 159 ~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
+|+++++.|||++..+.... .+..||+|||++||++||+.|++.|
T Consensus 143 ~a~~~~~~~vD~~~~~~~~~----~~~~Dg~Hpn~~G~~~~A~~i~~~i 187 (188)
T cd01827 143 IAKKLNLKLIDLHTPLKGKP----ELVPDWVHPNEKGAYILAKVVYKAI 187 (188)
T ss_pred HHHHcCCcEEEccccccCCc----cccCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999998876554 2457999999999999999999887
No 8
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.97 E-value=3.1e-29 Score=194.46 Aligned_cols=179 Identities=21% Similarity=0.346 Sum_probs=145.0
Q ss_pred ceEEEEcccccccccC--CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFS--NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
.||+++|||+|.|... ..+|.+.+.+.. .+.+.|.|++|.++.++..++++.+. ..+||+|++++|+||...
T Consensus 1 ~~i~~~GDSi~~g~~~~~~~~~~~~l~~~~--~~~v~n~g~~G~~~~~~l~~l~~~~~---~~~~d~v~i~~G~ND~~~- 74 (183)
T cd04501 1 MRVVCLGDSITYGYPVGPEASWVNLLAEFL--GKEVINRGINGDTTSQMLVRFYEDVI---ALKPAVVIIMGGTNDIIV- 74 (183)
T ss_pred CeEEEEccccccCcCCCCcchHHHHHHhhc--CCeEEecCcCCccHHHHHHHHHHHHH---hcCCCEEEEEeccCcccc-
Confidence 4799999999986543 346999888765 47899999999999999999887653 468999999999999954
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhC
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG 164 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~ 164 (256)
..+.++|.++++++++.+++ .++++|+++++|.......+ .....+..+.+||++++++|++.+
T Consensus 75 -------~~~~~~~~~~~~~li~~~~~--~~~~~il~~~~p~~~~~~~~-------~~~~~~~~~~~~n~~~~~~a~~~~ 138 (183)
T cd04501 75 -------NTSLEMIKDNIRSMVELAEA--NGIKVILASPLPVDDYPWKP-------QWLRPANKLKSLNRWLKDYARENG 138 (183)
T ss_pred -------CCCHHHHHHHHHHHHHHHHH--CCCcEEEEeCCCcCccccch-------hhcchHHHHHHHHHHHHHHHHHcC
Confidence 23679999999999999988 46889999998875433211 112446778999999999999999
Q ss_pred CeEEechhHhhcccc--cccccccccccCChhHHHHHHHHHHHHH
Q 025181 165 VKVVDLFTAIQKRDD--WKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 165 v~~vD~~~~~~~~~~--~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
+.|||++..+.+... ....+..||+|||++||+.||+.+.+.|
T Consensus 139 v~~vd~~~~~~~~~~~~~~~~~~~DgvHp~~~Gy~~~a~~i~~~~ 183 (183)
T cd04501 139 LLFLDFYSPLLDERNVGLKPGLLTDGLHPSREGYRVMAPLAEKAL 183 (183)
T ss_pred CCEEechhhhhccccccccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999876542 2334568999999999999999998764
No 9
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=7.2e-29 Score=194.03 Aligned_cols=183 Identities=20% Similarity=0.333 Sum_probs=143.4
Q ss_pred ceEEEEccccccccc--CCCChHHHHHHHhh---ccccEeecCCCCCchHHHHHHhhhhCC-CCCCCCCcEEEEEeccCC
Q 025181 7 PQFVLFGSSIVQLSF--SNGGWGAILSDIYA---RKADILLRGYYGWNSRRALQVLDQVFP-KDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~--~~~~~~~~l~~~~~---~~~~v~n~g~~G~~s~~~~~~~~~~~~-~~~~~~pd~vii~~G~ND 80 (256)
.+|+++|||+|+|.+ ...+|+..+.+.+. ..+.+.|.|++|.++.++..+++..+. .....+||+|+|++|+||
T Consensus 2 ~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND 81 (193)
T cd01835 2 KRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLND 81 (193)
T ss_pred cEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcc
Confidence 489999999998654 35689999887663 357889999999999999998876542 112368999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHH
Q 025181 81 SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLC 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~ 160 (256)
....... ....+.++|.++++++++.++. +.+|++++++|+...... ..+..+.++|+.++++|
T Consensus 82 ~~~~~~~--~~~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~~-----------~~~~~~~~~n~~~~~~a 145 (193)
T cd01835 82 TARGGRK--RPQLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKMP-----------YSNRRIARLETAFAEVC 145 (193)
T ss_pred cccccCc--ccccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCccccccc-----------hhhHHHHHHHHHHHHHH
Confidence 9664211 2345678999999999987764 468999998887532210 33567899999999999
Q ss_pred HHhCCeEEechhHhhcccccccccc-cccccCChhHHHHHHHHHHH
Q 025181 161 HELGVKVVDLFTAIQKRDDWKNACF-TDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 161 ~~~~v~~vD~~~~~~~~~~~~~~~~-~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
++++++|||++..+.+...+...++ .||+|||++||++||+.|..
T Consensus 146 ~~~~~~~vd~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 146 LRRDVPFLDTFTPLLNHPQWRRELAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred HHcCCCeEeCccchhcCcHHHHhhhccCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999887655554444 59999999999999999864
No 10
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.96 E-value=1.5e-28 Score=191.66 Aligned_cols=176 Identities=20% Similarity=0.339 Sum_probs=138.1
Q ss_pred CCCCceEEEEcccccccccC--CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 3 GPARPQFVLFGSSIVQLSFS--NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 3 ~p~~~~i~~iGDS~t~g~~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
++...+|+++|||+|+|... ..+|+..|++.+.....+.|.|++|.++.....++++.+. ..+||+|+|++|+||
T Consensus 7 ~~~~~~iv~~GDSit~G~~~~~~~~w~~~l~~~l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~---~~~pd~Vii~~GtND 83 (191)
T PRK10528 7 AAAADTLLILGDSLSAGYRMPASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK---QHQPRWVLVELGGND 83 (191)
T ss_pred cCCCCEEEEEeCchhhcCCCCccCchHHHHHHHHhhCCCEEecCcCcccHHHHHHHHHHHHH---hcCCCEEEEEeccCc
Confidence 45677999999999997543 3579999999988777899999999999999999988663 458999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC-CCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHH
Q 025181 81 SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST-PPVDEARINQGTSEIFSELVRTNELCQKYSDACINL 159 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~ 159 (256)
... ..+.+++.++++++++.+++.. ..+++++. +|.. ...+..+.+|+.++++
T Consensus 84 ~~~--------~~~~~~~~~~l~~li~~~~~~~--~~~ill~~~~P~~----------------~~~~~~~~~~~~~~~~ 137 (191)
T PRK10528 84 GLR--------GFPPQQTEQTLRQIIQDVKAAN--AQPLLMQIRLPAN----------------YGRRYNEAFSAIYPKL 137 (191)
T ss_pred Ccc--------CCCHHHHHHHHHHHHHHHHHcC--CCEEEEEeecCCc----------------ccHHHHHHHHHHHHHH
Confidence 843 4568999999999999999863 44555542 2210 1112346799999999
Q ss_pred HHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 160 CHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 160 ~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
|++++++|+|.+....... ...+..||+|||++||+.||+.+++.|++
T Consensus 138 a~~~~v~~id~~~~~~~~~--~~~~~~DGiHpn~~Gy~~~A~~i~~~l~~ 185 (191)
T PRK10528 138 AKEFDIPLLPFFMEEVYLK--PQWMQDDGIHPNRDAQPFIADWMAKQLQP 185 (191)
T ss_pred HHHhCCCccHHHHHhhccC--HhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999875433211 11245799999999999999999999986
No 11
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=4.5e-28 Score=185.59 Aligned_cols=166 Identities=27% Similarity=0.417 Sum_probs=137.4
Q ss_pred EEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCC
Q 025181 9 FVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSG 88 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~ 88 (256)
|+++|||+++|. +|.. .++ .+.+.|.|++|.++.++..++++.+ ..+||+|++++|+||+..
T Consensus 2 v~~~GdSi~~~~----~~~~----~~~-~~~v~n~g~~G~~~~~~~~~l~~~~----~~~pd~vvl~~G~ND~~~----- 63 (169)
T cd01828 2 LVFLGDSLTEGG----PWAL----LFP-DVKVANRGISGDTTRGLLARLDEDV----ALQPKAIFIMIGINDLAQ----- 63 (169)
T ss_pred EEEecchhhccC----cHHH----hcC-CCceEecCcccccHHHHHHHHHHHh----ccCCCEEEEEeeccCCCC-----
Confidence 799999999843 3443 233 5679999999999999988888765 468999999999999843
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEE
Q 025181 89 LGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVV 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~v 168 (256)
..+.++|.++++++++.+++.+++++|++++++|..... ...+..+.+||+.++++|++.++.||
T Consensus 64 ---~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~------------~~~~~~~~~~n~~l~~~a~~~~~~~i 128 (169)
T cd01828 64 ---GTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK------------SIPNEQIEELNRQLAQLAQQEGVTFL 128 (169)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC------------cCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 346899999999999999999999999999998864111 13456789999999999999999999
Q ss_pred echhHhhcccc-cccccccccccCChhHHHHHHHHHHHHH
Q 025181 169 DLFTAIQKRDD-WKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 169 D~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
|++..+.+... ....+..||+|||++||++||+.|++.|
T Consensus 129 d~~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~~~~ 168 (169)
T cd01828 129 DLWAVFTNADGDLKNEFTTDGLHLNAKGYAVWAAALQPYL 168 (169)
T ss_pred echhhhcCCCCCcchhhccCccccCHHHHHHHHHHHHHhh
Confidence 99999876543 2334568999999999999999999887
No 12
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=1.5e-28 Score=191.65 Aligned_cols=186 Identities=26% Similarity=0.312 Sum_probs=141.2
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPH 85 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 85 (256)
.+|+++|||+|+|......+...|++.+. ..+.+.|.|++|.++..+..++...+ ...+||+|+|++|+||.....
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~---~~~~~d~v~l~~G~ND~~~~~ 78 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDV---LPAKPDVVSIMFGINDSFRGF 78 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhccc---ccCCCCEEEEEeecchHhhcc
Confidence 48999999999955222222334444443 25789999999999998886666544 246799999999999996421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCC
Q 025181 86 PSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGV 165 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v 165 (256)
. ...+.++|.++++++++.+++..++++|+++++++........ ......+..+..||+.++++|+++++
T Consensus 79 ~----~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~------~~~~~~~~~~~~~n~~l~~~a~~~~~ 148 (191)
T cd01834 79 D----DPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPL------PDGAEYNANLAAYADAVRELAAENGV 148 (191)
T ss_pred c----ccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCC------CChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1356899999999999999877799999999988764322100 12235678889999999999999999
Q ss_pred eEEechhHhhccccc--ccccccccccCChhHHHHHHHHHHH
Q 025181 166 KVVDLFTAIQKRDDW--KNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 166 ~~vD~~~~~~~~~~~--~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
.|||++..+.+.... ...+..||+|||++||+.||+.+++
T Consensus 149 ~~iD~~~~~~~~~~~~~~~~~~~D~~Hpn~~G~~~~a~~~~~ 190 (191)
T cd01834 149 AFVDLFTPMKEAFQKAGEAVLTVDGVHPNEAGHRALARLWLE 190 (191)
T ss_pred eEEecHHHHHHHHHhCCCccccCCCCCCCHHHHHHHHHHHHh
Confidence 999999998764322 3345689999999999999999875
No 13
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.96 E-value=3.7e-28 Score=188.74 Aligned_cols=173 Identities=21% Similarity=0.324 Sum_probs=137.0
Q ss_pred eEEEEcccccccccC------CCChHHHHHHHhhc---cccEeecCCCCCchHHHHH-HhhhhCCCCCCCCCcEEEEEec
Q 025181 8 QFVLFGSSIVQLSFS------NGGWGAILSDIYAR---KADILLRGYYGWNSRRALQ-VLDQVFPKDAPIQPSLVIVYVG 77 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~------~~~~~~~l~~~~~~---~~~v~n~g~~G~~s~~~~~-~~~~~~~~~~~~~pd~vii~~G 77 (256)
||+++|||+|+|... ..+|+..|++.+.. .+.+.|.|++|.++..... .+...+ ..+||+|+|++|
T Consensus 1 ~i~~~GDSit~G~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~----~~~~d~vii~~G 76 (185)
T cd01832 1 RYVALGDSITEGVGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAAL----ALRPDLVTLLAG 76 (185)
T ss_pred CeeEecchhhcccCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHH----hcCCCEEEEecc
Confidence 699999999986653 26799999998853 6789999999999987544 344443 358999999999
Q ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC-ChhhhhcCCccchhhhhhhHHHHHHHHHHH
Q 025181 78 GNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV-DEARINQGTSEIFSELVRTNELCQKYSDAC 156 (256)
Q Consensus 78 ~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l 156 (256)
+||... ...+.++|.+++.++++.++. ++++|++++++|. ...... ...++.+.++|+.+
T Consensus 77 ~ND~~~-------~~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~~~~~~----------~~~~~~~~~~n~~l 137 (185)
T cd01832 77 GNDILR-------PGTDPDTYRADLEEAVRRLRA--AGARVVVFTIPDPAVLEPFR----------RRVRARLAAYNAVI 137 (185)
T ss_pred cccccc-------CCCCHHHHHHHHHHHHHHHHh--CCCEEEEecCCCccccchhH----------HHHHHHHHHHHHHH
Confidence 999854 145689999999999999994 7899999998886 221111 13455789999999
Q ss_pred HHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHH
Q 025181 157 INLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 157 ~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
+++|+++++.|||++..+.... ...+..||+|||++||++||+.|++
T Consensus 138 ~~~a~~~~v~~vd~~~~~~~~~--~~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 138 RAVAARYGAVHVDLWEHPEFAD--PRLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred HHHHHHcCCEEEecccCcccCC--ccccccCCCCCChhHHHHHHHHHhh
Confidence 9999999999999998764111 1234579999999999999999875
No 14
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.96 E-value=6e-28 Score=191.74 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=139.7
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
...+|+++|||+|+|.+... ...+.+.+. ...+.|.|++|.++..++.++.... ....+||+|+|++|+||+..
T Consensus 31 ~~~~iv~lGDSit~g~~~~~--~~~~~~~~~-~~~v~N~Gi~G~tt~~~l~r~~~~~--l~~~~pd~VvI~~G~ND~~~- 104 (214)
T cd01820 31 KEPDVVFIGDSITQNWEFTG--LEVWRELYA-PLHALNFGIGGDRTQNVLWRLENGE--LDGVNPKVVVLLIGTNNIGH- 104 (214)
T ss_pred CCCCEEEECchHhhhhcccc--hHHHHHHcC-cCCeEeeeeccccHhHHHHHHhcCC--ccCCCCCEEEEEecccccCC-
Confidence 34689999999999654332 222333333 5689999999999999988886421 12357999999999999854
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH-h
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE-L 163 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~-~ 163 (256)
..+.+++.++++++++.+++.+|+++|++++++|..... ......+.++|+.+++.|.+ .
T Consensus 105 -------~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~------------~~~~~~~~~~n~~l~~~~~~~~ 165 (214)
T cd01820 105 -------TTTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNP------------NPLRERNAQVNRLLAVRYDGLP 165 (214)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCc------------hhHHHHHHHHHHHHHHHhcCCC
Confidence 236899999999999999999999999999988864320 02345678999999888764 4
Q ss_pred CCeEEechhHhhccc-ccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 164 GVKVVDLFTAIQKRD-DWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 164 ~v~~vD~~~~~~~~~-~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
++.|||++..+.+.. .....++.||+|||++||++||+.|.+.|++.
T Consensus 166 ~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~~l~~~ 213 (214)
T cd01820 166 NVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHPTLARL 213 (214)
T ss_pred CEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999886543 22334568999999999999999999999863
No 15
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=1.6e-28 Score=191.38 Aligned_cols=179 Identities=20% Similarity=0.284 Sum_probs=139.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHH----hhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQV----LDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~----~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
||+++|||+|+|+ .|+..|++.+ .+.+.|.|++|.++..+... +...+ ...+||+|+|++|+||...
T Consensus 1 ~iv~~GDS~t~g~----~~~~~l~~~l--~~~v~N~g~~G~t~~~~~~~~~~~~~~~l---~~~~pd~Vii~~G~ND~~~ 71 (189)
T cd01825 1 RIAQLGDSHIAGD----FFTDVLRGLL--GVIYDNLGVNGASASLLLKWDAEFLQAQL---AALPPDLVILSYGTNEAFN 71 (189)
T ss_pred CeeEecCcccccc----chhhHHHhhh--ceEEecCccCchhhhhhhccCHHHHHHHH---hhCCCCEEEEECCCccccc
Confidence 6899999999853 6888888887 57899999999998764421 11122 2468999999999999854
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL 163 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~ 163 (256)
. ..+.+.|.++++++++.+++.+|+++|++++++|....... . ....+..++.+|+.++++|+++
T Consensus 72 ~-------~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~a~~~ 136 (189)
T cd01825 72 K-------QLNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGA-G-------RWRTPPGLDAVIAAQRRVAKEE 136 (189)
T ss_pred C-------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCC-C-------CcccCCcHHHHHHHHHHHHHHc
Confidence 2 24589999999999999999989999999999875332210 0 0023455789999999999999
Q ss_pred CCeEEechhHhhcccc---cc--cccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 164 GVKVVDLFTAIQKRDD---WK--NACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 164 ~v~~vD~~~~~~~~~~---~~--~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
++.|||++..+.+... +. ..+..||+|||++||+.||+.+.+.|.++
T Consensus 137 ~v~~vd~~~~~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~i~~~ 188 (189)
T cd01825 137 GIAFWDLYAAMGGEGGIWQWAEPGLARKDYVHLTPRGYERLANLLYEALLKA 188 (189)
T ss_pred CCeEEeHHHHhCCcchhhHhhcccccCCCcccCCcchHHHHHHHHHHHHHhh
Confidence 9999999999865311 11 22457999999999999999999999875
No 16
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.96 E-value=8.4e-28 Score=184.41 Aligned_cols=168 Identities=20% Similarity=0.357 Sum_probs=135.1
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPS 87 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~ 87 (256)
.|++||||+++ .|....... ..+++.|.|++|.++.+...++.+.+. ..+||+|+|++|+||+..
T Consensus 1 ~i~~~g~s~~~------~w~~~~~~~--~~~~v~N~Gi~G~~~~~~~~~~~~~~~---~~~p~~vvi~~G~ND~~~---- 65 (171)
T cd04502 1 GILFYGSSSIR------LWDTLADDL--APLPVVNRGFGGSTLADCLHYFDRLVL---PYQPRRVVLYAGDNDLAS---- 65 (171)
T ss_pred CEEEEcCchhc------chhhHHHhC--CCCceeecCcccchHHHHHHHHHhhhc---cCCCCEEEEEEecCcccC----
Confidence 38999999998 666644443 247899999999999999999887763 468999999999999843
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH-hCCe
Q 025181 88 GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE-LGVK 166 (256)
Q Consensus 88 ~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~-~~v~ 166 (256)
..+.+++.++++++++.+++.+|+++|++++++|..... ..+..+.++|+.++++|++ .++.
T Consensus 66 ----~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~-------------~~~~~~~~~n~~~~~~a~~~~~v~ 128 (171)
T cd04502 66 ----GRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARW-------------ALRPKIRRFNALLKELAETRPNLT 128 (171)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcch-------------hhHHHHHHHHHHHHHHHhcCCCeE
Confidence 345899999999999999999899999999977642210 2235578999999999985 6899
Q ss_pred EEechhHhhcccccc--cccccccccCChhHHHHHHHHHHHHH
Q 025181 167 VVDLFTAIQKRDDWK--NACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 167 ~vD~~~~~~~~~~~~--~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
|||++..+.+..... ..+..||+|||++||+.||+.+.+.|
T Consensus 129 ~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l~~~~ 171 (171)
T cd04502 129 YIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVIKPAL 171 (171)
T ss_pred EEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHHHhhC
Confidence 999999886644221 23458999999999999999998764
No 17
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.96 E-value=2.2e-27 Score=182.96 Aligned_cols=170 Identities=21% Similarity=0.382 Sum_probs=134.8
Q ss_pred eEEEEccccccccc--CCCChHHHHHHHhh---ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCC
Q 025181 8 QFVLFGSSIVQLSF--SNGGWGAILSDIYA---RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSM 82 (256)
Q Consensus 8 ~i~~iGDS~t~g~~--~~~~~~~~l~~~~~---~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 82 (256)
+|+++|||+|+|.. ...+|+..+++.+. ..+.+.|.|++|.++.....++++.+. ..+||+|+|++|+||..
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~---~~~pd~v~i~~G~ND~~ 78 (177)
T cd01822 2 TILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLA---QHKPDLVILELGGNDGL 78 (177)
T ss_pred eEEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHH---hcCCCEEEEeccCcccc
Confidence 79999999998654 24689999988773 468899999999999999998887663 35899999999999974
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q 025181 83 GPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE 162 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (256)
. ..+.++|.++++++++.+++. ++++++++++.... ........+|+.++++|++
T Consensus 79 ~--------~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~ 133 (177)
T cd01822 79 R--------GIPPDQTRANLRQMIETAQAR--GAPVLLVGMQAPPN---------------YGPRYTRRFAAIYPELAEE 133 (177)
T ss_pred c--------CCCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCc---------------cchHHHHHHHHHHHHHHHH
Confidence 3 356899999999999999986 58888887642110 0012357899999999999
Q ss_pred hCCeEEechh-HhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 163 LGVKVVDLFT-AIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 163 ~~v~~vD~~~-~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
+++.|+|.+. .+..... .+..||+|||++||++||+.|++.|+
T Consensus 134 ~~~~~~d~~~~~~~~~~~---~~~~DgvHpn~~G~~~~a~~i~~~i~ 177 (177)
T cd01822 134 YGVPLVPFFLEGVAGDPE---LMQSDGIHPNAEGQPIIAENVWPALE 177 (177)
T ss_pred cCCcEechHHhhhhhChh---hhCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 9999999753 2332222 24589999999999999999998873
No 18
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.95 E-value=1.9e-27 Score=187.59 Aligned_cols=188 Identities=17% Similarity=0.249 Sum_probs=137.4
Q ss_pred eEEEEcccccccccC--CCCh-HHHHHHHh----hccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 8 QFVLFGSSIVQLSFS--NGGW-GAILSDIY----ARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~--~~~~-~~~l~~~~----~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
+|+++|||+|+|.+. ..+| ...+++.+ ...+++.|.|++|.++.++..+++.........+||+|+|++|+||
T Consensus 1 ~i~~~GDSit~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~ND 80 (204)
T cd04506 1 KIVALGDSLTEGVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGND 80 (204)
T ss_pred CEeEEeccccCccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecchh
Confidence 589999999997653 3344 44454444 2357899999999999999998876432111348999999999999
Q ss_pred CCCCCCCC------CCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC-CCChhhhhcCCccchhhhhhhHHHHHHHH
Q 025181 81 SMGPHPSG------LGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP-PVDEARINQGTSEIFSELVRTNELCQKYS 153 (256)
Q Consensus 81 ~~~~~~~~------~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~n 153 (256)
+....... .....+.+.|.+++.++++.+++++|+++|++++++ |..... ......+..+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~---------~~~~~~~~~~~~~n 151 (204)
T cd04506 81 LMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYF---------PNITEINDIVNDWN 151 (204)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcccccc---------chHHHHHHHHHHHH
Confidence 86421100 001124578999999999999999899999998753 321110 01113567889999
Q ss_pred HHHHHHHHHhC-CeEEechhHhhcccccccccccccccCChhHHHHHHHHHHH
Q 025181 154 DACINLCHELG-VKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 154 ~~l~~~~~~~~-v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
+.++++|++++ +.|||++..+.... ....+..||+|||++||++||+.+++
T Consensus 152 ~~~~~~a~~~~~v~~vd~~~~~~~~~-~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 152 EASQKLASQYKNAYFVPIFDLFSDGQ-NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred HHHHHHHHhCCCeEEEehHHhhcCCc-ccccccccCcCCCHHHHHHHHHHHHh
Confidence 99999999987 99999999887653 12234579999999999999999875
No 19
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.95 E-value=9.6e-27 Score=179.52 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=130.0
Q ss_pred eEEEEcccccccccC---CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCC
Q 025181 8 QFVLFGSSIVQLSFS---NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGP 84 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~ 84 (256)
||+++|||+|+|.+. ..+|+..+++.++ +++.|.|++|.++... .+.+.+. ..+||+|+|++|+||...
T Consensus 1 ~iv~~GDSit~G~g~~~~~~~~~~~~~~~~~--~~v~N~g~~G~~~~~~--~~~~~~~---~~~pd~vii~~G~ND~~~- 72 (177)
T cd01844 1 PWVFYGTSISQGACASRPGMAWTAILARRLG--LEVINLGFSGNARLEP--EVAELLR---DVPADLYIIDCGPNIVGA- 72 (177)
T ss_pred CEEEEeCchhcCcCCCCCCCcHHHHHHHHhC--CCeEEeeecccccchH--HHHHHHH---hcCCCEEEEEeccCCCcc-
Confidence 699999999997654 3589999998874 7899999999976432 2333332 358999999999999742
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH--
Q 025181 85 HPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE-- 162 (256)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~-- 162 (256)
..+|.++++.+++.+++.+|+++|++++++|........ ......++....+++.+++++.+
T Consensus 73 ----------~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (177)
T cd01844 73 ----------EAMVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTP------GRGKLTLAVRRALREAFEKLRADGV 136 (177)
T ss_pred ----------HHHHHHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCc------chhHHHHHHHHHHHHHHHHHHhcCC
Confidence 128999999999999999999999999988763221110 11224556677777777766543
Q ss_pred hCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 163 LGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 163 ~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
.++.|||.+..+... ..++.||+|||++||++||+.+++.|
T Consensus 137 ~~v~~id~~~~~~~~----~~~~~DglHpn~~Gy~~~a~~l~~~~ 177 (177)
T cd01844 137 PNLYYLDGEELLGPD----GEALVDGIHPTDLGHMRYADRFEPVL 177 (177)
T ss_pred CCEEEecchhhcCCC----CCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 368999998776543 23568999999999999999998764
No 20
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.94 E-value=1.9e-26 Score=174.49 Aligned_cols=151 Identities=20% Similarity=0.266 Sum_probs=127.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPS 87 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~ 87 (256)
+|+++|||+|.| +..|.|++|.++.++..++.+.+. ..+||+|+|++|+||....
T Consensus 2 ~~~~~Gds~~~g-------------------~~~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~--- 56 (157)
T cd01833 2 RIMPLGDSITWG-------------------DKDHEGHSGYLIDQIAAAAADWVL---AAKPDVVLLHLGTNDLVLN--- 56 (157)
T ss_pred ceeecCCceeec-------------------CCCCCCCCCccHHHHHHHhhhccc---cCCCCEEEEeccCcccccC---
Confidence 789999999984 577999999999999998876653 5789999999999998542
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh----
Q 025181 88 GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL---- 163 (256)
Q Consensus 88 ~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~---- 163 (256)
.+.+.|.++++++++.+++..|+++|++++++|..... .+....+||+.++++|+++
T Consensus 57 -----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~--------------~~~~~~~~n~~l~~~~~~~~~~~ 117 (157)
T cd01833 57 -----RDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDAS--------------GNARIAEYNAAIPGVVADLRTAG 117 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc--------------hhHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999999999999999888753321 1466789999999999874
Q ss_pred -CCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 164 -GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 164 -~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
++.|+|++..+.. ..+..||+|||++||+.||+.++++|
T Consensus 118 ~~v~~vd~~~~~~~-----~~~~~Dg~Hpn~~Gy~~~a~~~~~~~ 157 (157)
T cd01833 118 SPVVLVDMSTGYTT-----ADDLYDGLHPNDQGYKKMADAWYEAL 157 (157)
T ss_pred CCEEEEecCCCCCC-----cccccCCCCCchHHHHHHHHHHHhhC
Confidence 6899999988765 23568999999999999999998764
No 21
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.94 E-value=5.4e-26 Score=179.22 Aligned_cols=182 Identities=20% Similarity=0.198 Sum_probs=129.6
Q ss_pred eEEEEcccccccccC----CCChHHHHHHHhh-----ccccEeecCCCCCch------HHHHHHhhhhCCCCCCCCCcEE
Q 025181 8 QFVLFGSSIVQLSFS----NGGWGAILSDIYA-----RKADILLRGYYGWNS------RRALQVLDQVFPKDAPIQPSLV 72 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~----~~~~~~~l~~~~~-----~~~~v~n~g~~G~~s------~~~~~~~~~~~~~~~~~~pd~v 72 (256)
.|+++|||+|.|.+. ..+|+..|++.+. ..+++.|+|++|.++ .....++.+.+. ...+||+|
T Consensus 1 ~iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~--~~~~p~~v 78 (204)
T cd01830 1 SVVALGDSITDGRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVL--SQPGVRTV 78 (204)
T ss_pred CEEEEecccccCCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHh--cCCCCCEE
Confidence 489999999996542 2589998876553 467899999999998 478888875442 12369999
Q ss_pred EEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHH
Q 025181 73 IVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKY 152 (256)
Q Consensus 73 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
+|++|+||+............+.++|.++++++++.+++. +++|++++++|........ . .......++
T Consensus 79 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~~vil~t~~P~~~~~~~~------~---~~~~~~~~~ 147 (204)
T cd01830 79 IILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR--GIKVIGATITPFEGSGYYT------P---AREATRQAV 147 (204)
T ss_pred EEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC--CCeEEEecCCCCCCCCCCC------H---HHHHHHHHH
Confidence 9999999986543221123457899999999999999985 5889999888864321110 0 122334566
Q ss_pred HHHHHHHHHHhCCeEEechhHhhcccc---ccccc-ccccccCChhHHHHHHHHHH
Q 025181 153 SDACINLCHELGVKVVDLFTAIQKRDD---WKNAC-FTDGIHLSEEGSKIVVAEIL 204 (256)
Q Consensus 153 n~~l~~~~~~~~v~~vD~~~~~~~~~~---~~~~~-~~Dg~Hp~~~G~~~ia~~l~ 204 (256)
|+++++.++ + ..+||++..+.+... ....+ ..||+|||++||++||+.+.
T Consensus 148 n~~~~~~~~-~-~~~vD~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 148 NEWIRTSGA-F-DAVVDFDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred HHHHHccCC-C-CeeeEhHHhhcCCCCchhcccccCCCCCCCCCHHHHHHHHHhcC
Confidence 776665432 2 348999998876532 22233 47999999999999999874
No 22
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.93 E-value=1.1e-24 Score=171.33 Aligned_cols=176 Identities=15% Similarity=0.202 Sum_probs=128.6
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhh--ccccEeecCCCCCchH-----HHHHHhhhhCCCCCCCCCcEEEEEeccCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYA--RKADILLRGYYGWNSR-----RALQVLDQVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~s~-----~~~~~~~~~~~~~~~~~pd~vii~~G~ND 80 (256)
||+++|||+|+| |...+.+.+. ..+.+.|.+++|++.. ....++...+ ...+||+|+|++|+||
T Consensus 1 ril~iGDS~~~g------~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l---~~~~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQG------LAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELI---AEEKPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHHH------HHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHH---hcCCCCEEEEEecCCC
Confidence 689999999983 3333444443 2477889999887521 2234455544 2578999999999999
Q ss_pred CCCCCCCCCC----CCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHH
Q 025181 81 SMGPHPSGLG----PHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDAC 156 (256)
Q Consensus 81 ~~~~~~~~~~----~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l 156 (256)
+......... ...-.+.|.++++.+++.+++ ++++|+++++||+... ..++.+..+|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~--~~~~vili~~pp~~~~--------------~~~~~~~~~~~~~ 135 (200)
T cd01829 72 RQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARA--KGVPVIWVGLPAMRSP--------------KLSADMVYLNSLY 135 (200)
T ss_pred CccccCCCceeecCChhHHHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCCCh--------------hHhHHHHHHHHHH
Confidence 8653221100 011146888899999998886 6789999999887432 2346678999999
Q ss_pred HHHHHHhCCeEEechhHhhcccccc------------cccccccccCChhHHHHHHHHHHHHHH
Q 025181 157 INLCHELGVKVVDLFTAIQKRDDWK------------NACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 157 ~~~~~~~~v~~vD~~~~~~~~~~~~------------~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
+++|++.++.|+|+++.+++...+. ..+..||+|||++||+.||+.+++.|+
T Consensus 136 ~~~a~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~G~~~~a~~i~~~l~ 199 (200)
T cd01829 136 REEVAKAGGEFVDVWDGFVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAAGGRKLAFYVEKLIR 199 (200)
T ss_pred HHHHHHcCCEEEEhhHhhcCCCCCeeeeccCCCCcEEEeecCCCceECHHHHHHHHHHHHHHhh
Confidence 9999999999999999987754431 123469999999999999999999886
No 23
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.92 E-value=1.1e-24 Score=178.02 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=144.0
Q ss_pred eEEEEcccccccccC--------------CCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhh----hhCCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFS--------------NGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLD----QVFPKDAPIQ 68 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~--------------~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~----~~~~~~~~~~ 68 (256)
++++||||++.|.+. ..+|+..+++.++. ..++.|.+++|+++.++..... .+.. .....
T Consensus 2 ~~v~iGDS~~~G~g~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~n~a~sGa~~~~~~~~~~~~~~~~~~-~l~~~ 80 (259)
T cd01823 2 RYVALGDSYAAGPGAGPLDDGPDDGCRRSSNSYPTLLARALGDETLSFTDVACSGATTTDGIEPQQGGIAPQAG-ALDPD 80 (259)
T ss_pred CEEEecchhhcCCCCCcccCCCCCCCccCCccHHHHHHHHcCCCCceeeeeeecCcccccccccccCCCchhhc-ccCCC
Confidence 789999999997652 23699999998874 2779999999999988875421 1111 12456
Q ss_pred CcEEEEEeccCCCCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChh
Q 025181 69 PSLVIVYVGGNDSMGPHPS-------------------GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEA 129 (256)
Q Consensus 69 pd~vii~~G~ND~~~~~~~-------------------~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~ 129 (256)
+|+|+|.+|+||+...... ........+.|.++|.++++.+++..|+++|+++++|++...
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~~~ 160 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLFPP 160 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccccC
Confidence 9999999999998542110 001124467899999999999999999999999998876432
Q ss_pred hhhcCC-------ccchhhhhhhHHHHHHHHHHHHHHHHHhC---CeEEechhHhhcccc------------cccccccc
Q 025181 130 RINQGT-------SEIFSELVRTNELCQKYSDACINLCHELG---VKVVDLFTAIQKRDD------------WKNACFTD 187 (256)
Q Consensus 130 ~~~~~~-------~~~~~~~~~~~~~~~~~n~~l~~~~~~~~---v~~vD~~~~~~~~~~------------~~~~~~~D 187 (256)
...... .-........++.+.++|+.++++|++++ +.|||++..|..+.. .......|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~~~~~~v~fvD~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d 240 (259)
T cd01823 161 DGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAADAGDYKVRFVDTDAPFAGHRACSPDPWSRSVLDLLPTRQGK 240 (259)
T ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEEECCCCcCCCccccCCCccccccCCCCCCCcc
Confidence 111100 00112334677889999999999999999 999999998875421 11223579
Q ss_pred cccCChhHHHHHHHHHHH
Q 025181 188 GIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 188 g~Hp~~~G~~~ia~~l~~ 205 (256)
++|||.+||+.||+.|..
T Consensus 241 ~~HPn~~G~~~~A~~i~~ 258 (259)
T cd01823 241 PFHPNAAGHRAIADLIVD 258 (259)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 24
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.92 E-value=1.3e-24 Score=166.95 Aligned_cols=176 Identities=26% Similarity=0.420 Sum_probs=132.9
Q ss_pred EEEcccccccccC--CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCC
Q 025181 10 VLFGSSIVQLSFS--NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPS 87 (256)
Q Consensus 10 ~~iGDS~t~g~~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~ 87 (256)
+++|||+|+|... ..+|+..+++..+..+.+.|.|++|.++.+...++.+.+......+||+|+|++|+||.... .
T Consensus 1 v~~GDS~t~g~~~~~~~~~~~~l~~~~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ND~~~~-~- 78 (179)
T PF13472_consen 1 VFLGDSITAGYGAPNNGSYPDRLAERPGRGIEVYNLGVSGATSSDFLARLQRDVLRFKDPKPDLVVISFGTNDVLNG-D- 78 (179)
T ss_dssp EEEESHHHHTTTTSSCTSHHHHHHHHHTCCEEEEEEE-TT-BHHHHHHHHHHHCHHHCGTTCSEEEEE--HHHHCTC-T-
T ss_pred CEEccccccCCCCCCCCCHHHHHHHhhCCCcEEEEEeecCccHhHHHHHHHHHHhhhccCCCCEEEEEccccccccc-c-
Confidence 6899999986553 37899999987556788999999999999988887765421125789999999999999764 1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeE
Q 025181 88 GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKV 167 (256)
Q Consensus 88 ~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~ 167 (256)
....+.+.+.++++++++.++... +|++++++|......... ..........+|++++++|+++++.|
T Consensus 79 --~~~~~~~~~~~~l~~~i~~~~~~~---~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~ 146 (179)
T PF13472_consen 79 --ENDTSPEQYEQNLRRIIEQLRPHG---PVILVSPPPRGPDPRDPK-------QDYLNRRIDRYNQAIRELAKKYGVPF 146 (179)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHTTS---EEEEEE-SCSSSSTTTTH-------TTCHHHHHHHHHHHHHHHHHHCTEEE
T ss_pred --cccccHHHHHHHHHHHHHhhcccC---cEEEecCCCccccccccc-------chhhhhhHHHHHHHHHHHHHHcCCEE
Confidence 134557889999999999887753 888998888654322110 11456778999999999999999999
Q ss_pred EechhHhhcccccc-cccccccccCChhHHHHH
Q 025181 168 VDLFTAIQKRDDWK-NACFTDGIHLSEEGSKIV 199 (256)
Q Consensus 168 vD~~~~~~~~~~~~-~~~~~Dg~Hp~~~G~~~i 199 (256)
||++..+.+...+. ..+..|++|||++||++|
T Consensus 147 id~~~~~~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 147 IDLFDAFDDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp EEHHHHHBTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred EECHHHHccccccchhhcCCCCCCcCHHHhCcC
Confidence 99999987754332 345689999999999987
No 25
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.91 E-value=1e-23 Score=161.40 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=113.5
Q ss_pred eEEEEcccccccccC---------------CCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEE
Q 025181 8 QFVLFGSSIVQLSFS---------------NGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLV 72 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~---------------~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~v 72 (256)
+|++||||+|+|.+. ..+|+..+++.++.. +.+.+++|.+ ||+|
T Consensus 1 ~i~~iGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~--~~~~~~~g~~-------------------pd~v 59 (169)
T cd01831 1 KIEFIGDSITCGYGVTGKSRCDFSAATEDPSLSYAALLARALNAE--YSIIAYSGIG-------------------PDLV 59 (169)
T ss_pred CEEEEeccccccCccCCCCCCCCcccccchhhhHHHHHHHHhCCc--EEEEEecCCC-------------------CCEE
Confidence 589999999996553 357899999988743 4555677765 8999
Q ss_pred EEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHH
Q 025181 73 IVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKY 152 (256)
Q Consensus 73 ii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
+|++|+||.... ...+.+++.+++.++++.+++.+|.++|+++.++...... ..++....+
T Consensus 60 ii~~G~ND~~~~------~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~-------------~~~~~~~~~ 120 (169)
T cd01831 60 VINLGTNDFSTG------NNPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPY-------------GTEEEIKRV 120 (169)
T ss_pred EEECCcCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCcccccc-------------ccHHHHHHH
Confidence 999999998542 1246799999999999999999999999888765532110 002334445
Q ss_pred HHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 153 SDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 153 n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
++.+++.+. .++.|+|.+..+.. .++.||+|||++||++||+.+++.|+
T Consensus 121 ~~~~~~~~~-~~v~~id~~~~~~~------~~~~DgiHPn~~G~~~iA~~l~~~i~ 169 (169)
T cd01831 121 AEAFKDQKS-KKVHYFDTPGILQH------NDIGCDWHPTVAGHQKIAKHLLPAIK 169 (169)
T ss_pred HHHHHhcCC-ceEEEEecccccCC------CCcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 544444332 35999999765431 23579999999999999999999874
No 26
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.90 E-value=1.2e-22 Score=152.34 Aligned_cols=149 Identities=16% Similarity=0.294 Sum_probs=114.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPS 87 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~ 87 (256)
.|+++|||+|. ++...+.+.++. . +++ +.+|.++.....++++... ....+|+|||++|+||..
T Consensus 1 ~v~~~GDSv~~------~~~~~~~~~~p~-~-~i~-a~~g~~~~~~~~~l~~~~~--~~~~~d~vvi~lGtNd~~----- 64 (150)
T cd01840 1 DITAIGDSVML------DSSPALQEIFPN-I-QID-AKVGRQMSEAPDLIRQLKD--SGKLRKTVVIGLGTNGPF----- 64 (150)
T ss_pred CeeEEeehHHH------chHHHHHHHCCC-C-EEE-eeecccHHHHHHHHHHHHH--cCCCCCeEEEEecCCCCC-----
Confidence 47899999998 567788888773 2 334 5666677788888877654 235789999999999972
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh-CCe
Q 025181 88 GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL-GVK 166 (256)
Q Consensus 88 ~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~-~v~ 166 (256)
+.++++++++.+. ++.+|+++++++- . ....++|+.++++|+++ ++.
T Consensus 65 ----------~~~nl~~ii~~~~---~~~~ivlv~~~~~--~-----------------~~~~~~n~~~~~~a~~~~~v~ 112 (150)
T cd01840 65 ----------TKDQLDELLDALG---PDRQVYLVNPHVP--R-----------------PWEPDVNAYLLDAAKKYKNVT 112 (150)
T ss_pred ----------CHHHHHHHHHHcC---CCCEEEEEECCCC--c-----------------chHHHHHHHHHHHHHHCCCcE
Confidence 3788888888763 4688999887631 0 11468899999999999 999
Q ss_pred EEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 167 VVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 167 ~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
++|++..+.....+ +..||+|||++||++||+.|.+.|
T Consensus 113 ~id~~~~~~~~~~~---~~~DgiHpn~~G~~~~a~~i~~ai 150 (150)
T cd01840 113 IIDWYKAAKGHPDW---FYGDGVHPNPAGAKLYAALIAKAI 150 (150)
T ss_pred EecHHHHhcccchh---hcCCCCCCChhhHHHHHHHHHHhC
Confidence 99999887654433 457999999999999999998764
No 27
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.87 E-value=6.9e-21 Score=146.13 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=132.1
Q ss_pred EEEEcccccccccCCCC---hHH---HHHHHhhccccEeecCCCCCchHHHHHHhh--hhCCCCCCCCCcEEEEEeccCC
Q 025181 9 FVLFGSSIVQLSFSNGG---WGA---ILSDIYARKADILLRGYYGWNSRRALQVLD--QVFPKDAPIQPSLVIVYVGGND 80 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~---~~~---~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~--~~~~~~~~~~pd~vii~~G~ND 80 (256)
|+++|||++.|...... +.. ...........+.|.+.+|.++......+. ... ...+||+|++.+|+||
T Consensus 1 i~~~GDS~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~---~~~~~d~vil~~G~ND 77 (187)
T cd00229 1 ILVIGDSITAGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLGLRLAL---LKDKPDLVIIELGTND 77 (187)
T ss_pred CeeeccccccccCCCCCCCCccchhhHHHhccCCCceEEeecccchhHHHHHhhcchhhhh---ccCCCCEEEEEecccc
Confidence 68999999986653221 111 112222345778899999999988777652 222 3578999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHH
Q 025181 81 SMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLC 160 (256)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~ 160 (256)
..... ..+.+.+...+.++++.+++..++++|+++++++...... ........+|+.++++|
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 139 (187)
T cd00229 78 LGRGG------DTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREG------------LLGRALPRYNEAIKAVA 139 (187)
T ss_pred ccccc------ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch------------hhHHHHHHHHHHHHHHH
Confidence 95421 2457899999999999999878999999999998754322 23455788999999999
Q ss_pred HHhC----CeEEechhHhhcccccccccccccccCChhHHHHHHHHHHH
Q 025181 161 HELG----VKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 161 ~~~~----v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
++++ +.++|++..+... ....+..||+|||++||+++|+.+++
T Consensus 140 ~~~~~~~~~~~~d~~~~~~~~--~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 140 AENPAPSGVDLVDLAALLGDE--DKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred HHcCCCcceEEEEhhhhhCCC--ccccccCCCCCCchhhHHHHHHHHhc
Confidence 9998 9999999988765 12234689999999999999999875
No 28
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.85 E-value=1.9e-21 Score=155.96 Aligned_cols=193 Identities=23% Similarity=0.385 Sum_probs=126.2
Q ss_pred EEEEcccccccc--cCCCChHHHHHHHh---------hccccEeecCCCCCchH-----------HHHHHhhhhCCCCCC
Q 025181 9 FVLFGSSIVQLS--FSNGGWGAILSDIY---------ARKADILLRGYYGWNSR-----------RALQVLDQVFPKDAP 66 (256)
Q Consensus 9 i~~iGDS~t~g~--~~~~~~~~~l~~~~---------~~~~~v~n~g~~G~~s~-----------~~~~~~~~~~~~~~~ 66 (256)
|++||||+|.++ ....+|...+...+ ...+.+.|.+++|.++. .....+.........
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLDSKSF 80 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHHHHHH
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCccccccchhhHHHHHHHHHhhcccccccc
Confidence 789999999973 34568999998877 34577889999999842 112211111000113
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCc-----eEEEEcCCCCChhh-hhcCCccchh
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCAT-----RIIFLSTPPVDEAR-INQGTSEIFS 140 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~-----~vi~~~~~p~~~~~-~~~~~~~~~~ 140 (256)
.++++|+|++|+||++.. ..........+.+.+++.++++.++.. +.. .++++..+|..... ..........
T Consensus 81 ~~~~lv~i~~G~ND~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T PF00657_consen 81 YDPDLVVIWIGTNDYFNN-RDSSDNNTSVEEFVENLRNAIKRLRSN-GARLIIVANIVVINLPPIGCLPAWSSNNKDSAS 158 (234)
T ss_dssp HTTSEEEEE-SHHHHSSC-CSCSTTHHHHHHHHHHHHHHHHHHHHT-TTEEEEEEEEEEEHHC-GGGSTTHHHTHTTTCT
T ss_pred CCcceEEEecccCcchhh-cccchhhhhHhhHhhhhhhhhhHHhcc-CCccccccccccccccccccccccccccccccc
Confidence 578999999999998631 111123456789999999999999954 445 45555555432100 0111111234
Q ss_pred hhhhhHHHHHHHHHHHHHHH--------HHhCCeEEechhHhhccccc-----ccccccccccCChhHHHHHHHHH
Q 025181 141 ELVRTNELCQKYSDACINLC--------HELGVKVVDLFTAIQKRDDW-----KNACFTDGIHLSEEGSKIVVAEI 203 (256)
Q Consensus 141 ~~~~~~~~~~~~n~~l~~~~--------~~~~v~~vD~~~~~~~~~~~-----~~~~~~Dg~Hp~~~G~~~ia~~l 203 (256)
+....+.....||+.+++.+ +..++.++|++..+...... ...++.|++|||++||+++|+.|
T Consensus 159 ~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 159 CIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHHHcCC
Confidence 56678889999999999999 57789999999997764211 12367999999999999999976
No 29
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.85 E-value=1.6e-20 Score=141.17 Aligned_cols=168 Identities=18% Similarity=0.289 Sum_probs=85.4
Q ss_pred CceEEEEcccccccccC---CCChHHHHHHHhhccccEeecCCCCCch-HHHHHHhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 6 RPQFVLFGSSIVQLSFS---NGGWGAILSDIYARKADILLRGYYGWNS-RRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~s-~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
+++|++.|+|||+|+.. ...|+..+++.++ ++++|.|++|..- +.....+-.. ..+|++++.+|.| .
T Consensus 1 ~k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~--~~~iNLGfsG~~~le~~~a~~ia~------~~a~~~~ld~~~N-~ 71 (178)
T PF14606_consen 1 EKRWVAYGSSITQGACASRPGMAYPAILARRLG--LDVINLGFSGNGKLEPEVADLIAE------IDADLIVLDCGPN-M 71 (178)
T ss_dssp --EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT---EEEEEE-TCCCS--HHHHHHHHH------S--SEEEEEESHH-C
T ss_pred CCeEEEECChhhcCCCCCCCcccHHHHHHHHcC--CCeEeeeecCccccCHHHHHHHhc------CCCCEEEEEeecC-C
Confidence 46899999999997652 3479999999996 7899999999753 2222222222 3569999999999 1
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 025181 82 MGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCH 161 (256)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~ 161 (256)
+.+.|.+++..+++.+|+.+|.++|++++..+......... ......++|+.+++..+
T Consensus 72 ------------~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~----------~~~~~~~~~~~~r~~v~ 129 (178)
T PF14606_consen 72 ------------SPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNS----------RGETVEEFREALREAVE 129 (178)
T ss_dssp ------------CTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--T----------TS--HHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCch----------HHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999999999776543322111 11223444444444443
Q ss_pred H------hCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 162 E------LGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 162 ~------~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
+ .++.||+-.+.+.+... .+.||+|||+.|+..||+.+.+.|+
T Consensus 130 ~l~~~g~~nl~~l~g~~llg~d~e----~tvDgvHP~DlG~~~~a~~l~~~ir 178 (178)
T PF14606_consen 130 QLRKEGDKNLYYLDGEELLGDDHE----ATVDGVHPNDLGMMRMADALEPVIR 178 (178)
T ss_dssp HHHHTT-TTEEEE-HHHCS----------------------------------
T ss_pred HHHHcCCCcEEEeCchhhcCcccc----cccccccccccccccccccccccCC
Confidence 3 37899998886654432 3589999999999999999998775
No 30
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=99.84 E-value=8.8e-20 Score=150.03 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=115.3
Q ss_pred cEeecCCCCCchHHHHHHhhhhCCC-------CCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh
Q 025181 39 DILLRGYYGWNSRRALQVLDQVFPK-------DAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKS 111 (256)
Q Consensus 39 ~v~n~g~~G~~s~~~~~~~~~~~~~-------~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~ 111 (256)
.+.|.|++|+++.++....+..+.+ ....++++|+|++|+||+|..... ....+.+.|.++++++++.+++
T Consensus 83 ~~~N~av~Ga~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~~~--~~~~~~~~~~~nL~~~L~~Lr~ 160 (288)
T cd01824 83 SGFNVAEPGAKSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLCED--ANPGSPQTFVKNLRKALDILRD 160 (288)
T ss_pred cceeecccCcchhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhccc--ccCcCHHHHHHHHHHHHHHHHH
Confidence 5679999999999988543321111 123467889999999999873221 2236789999999999999999
Q ss_pred hcCCceEEEEcCCCCChhhh------------hcCCccch----hhhhhhHHHHHHHHHHHHHHHHHhC-------CeEE
Q 025181 112 LSCATRIIFLSTPPVDEARI------------NQGTSEIF----SELVRTNELCQKYSDACINLCHELG-------VKVV 168 (256)
Q Consensus 112 ~~~~~~vi~~~~~p~~~~~~------------~~~~~~~~----~~~~~~~~~~~~~n~~l~~~~~~~~-------v~~v 168 (256)
..|.+.|++++++....... ...|.... ....++.+...+|++.++++|++.. +.+.
T Consensus 161 ~~P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~C~c~~~~~~~~~~~~~~~~~~y~~~~~eia~~~~~~~~~f~vv~q 240 (288)
T cd01824 161 EVPRAFVNLVGLLNVASLRSLTKKPLQCETLLAPECPCLLGPTENSYQDLKKFYKEYQNEVEEIVESGEFDREDFAVVVQ 240 (288)
T ss_pred hCCCcEEEEEcCCCcHHHHHhccCCccccccCCCcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHhcccccccCccEEee
Confidence 99999999999877632211 11121111 1124677888999999999998733 3333
Q ss_pred echhHhhc----ccccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 169 DLFTAIQK----RDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 169 D~~~~~~~----~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.+...... .+.-...+..||+|||++||.++|+.+++.|.+.
T Consensus 241 Pf~~~~~~~~~~~g~d~~~~~~D~~Hps~~G~~~ia~~lwn~m~~p 286 (288)
T cd01824 241 PFFEDTSLPPLPDGPDLSFFSPDCFHFSQRGHAIAANALWNNLLEP 286 (288)
T ss_pred CchhccccccccCCCcchhcCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 32222111 0111123458999999999999999999999753
No 31
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.83 E-value=3.6e-19 Score=141.56 Aligned_cols=184 Identities=23% Similarity=0.324 Sum_probs=136.8
Q ss_pred eEEEEcccccccccCC----CChHHHHHHHhh-cccc----EeecCCCCCchHHHHHHhhhhCCCCCCCC-CcEEEEEec
Q 025181 8 QFVLFGSSIVQLSFSN----GGWGAILSDIYA-RKAD----ILLRGYYGWNSRRALQVLDQVFPKDAPIQ-PSLVIVYVG 77 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~----~~~~~~l~~~~~-~~~~----v~n~g~~G~~s~~~~~~~~~~~~~~~~~~-pd~vii~~G 77 (256)
+|+++|||+|.|.... .+|.+.+++.+. .... +.|.+.+|.++.....++...+.. .. +|+|+|++|
T Consensus 10 ~i~~~GDSlt~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~s~~~~~~g~~rl~~~l~~---~~~~d~v~i~lG 86 (216)
T COG2755 10 TVLALGDSLTAGYGPANRLEGGWVQVLAKRLVAKGVAVINLVLNGGISGDTSAGGLQRLPALLKQ---HLPPDLVIIMLG 86 (216)
T ss_pred eEEEeccchhccccCCCccccCchHHHHHHhhccCCeeeeeeecceeecCcchhHHHHhHHHHhc---cCCCCEEEEEee
Confidence 6999999999866544 489999998887 3322 567889999999988888877753 33 899999999
Q ss_pred cCCCCCCCCCCCCCCCC--hhHHHHHHHHHHHHHHhhcCC-----ceEE-EEcCCCCChhhhhcCCccchhhhhhhHHHH
Q 025181 78 GNDSMGPHPSGLGPHVP--LPEYVENMRRIATHLKSLSCA-----TRII-FLSTPPVDEARINQGTSEIFSELVRTNELC 149 (256)
Q Consensus 78 ~ND~~~~~~~~~~~~~~--~~~~~~~l~~li~~i~~~~~~-----~~vi-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+||++ +. .... .+.+..++.++++.+++.++. +.++ +...+|.... ......+...
T Consensus 87 ~ND~~-~~-----~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----------~~~~~~~~~~ 150 (216)
T COG2755 87 GNDIG-PL-----RGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIAT----------DFPTYGADWF 150 (216)
T ss_pred ccccc-hh-----cccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCcccc----------chhHHHHHHH
Confidence 99996 11 2233 388999999999999998754 4553 3333332200 0122556778
Q ss_pred HHHHHHHHHHHHHhCCeEEechhHhhccccccccc-ccccccCChhHHHHHHHHHHHHHHhcc
Q 025181 150 QKYSDACINLCHELGVKVVDLFTAIQKRDDWKNAC-FTDGIHLSEEGSKIVVAEILKVLKQAE 211 (256)
Q Consensus 150 ~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~-~~Dg~Hp~~~G~~~ia~~l~~~l~~~~ 211 (256)
..+++.+.++|++..+++.|.+....+ ....... ..||+|||.+||+.||+.+.+.|.+..
T Consensus 151 ~~~~~~~~~la~~~~v~~~d~~~~~~~-~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~~l~~~~ 212 (216)
T COG2755 151 HAANEILAQLANELFVPLADLFDAGVD-GGRLPELLTEDGLHPNAKGYQALAEALAEVLAKLL 212 (216)
T ss_pred HHHHHHHHHhhhhcCccchHHHhcccc-cccCcccccCCCCCcCHhhHHHHHHHHHHHHHHHh
Confidence 889999999999888999999887654 2222223 379999999999999999999999753
No 32
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=99.80 E-value=2.8e-18 Score=138.57 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=120.5
Q ss_pred EeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCC-ceE
Q 025181 40 ILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCA-TRI 118 (256)
Q Consensus 40 v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~-~~v 118 (256)
..|.|++|++++++..+++..+.......|++|+|.+|+||.|...++. ...+++++|++++.++++.+++..|. ..|
T Consensus 94 ~qN~G~sGatSrdl~~~l~~Ll~n~~~~~P~lVtI~lGgND~C~g~~d~-~~~tp~eefr~NL~~~L~~Lr~~lP~~s~V 172 (305)
T cd01826 94 YQNLGVNGASSRNLLSIIKSIARNRTTDKPALVIYSMIGNDVCNGPNDT-INHTTPEEFYENVMEALKYLDTKLPNGSHV 172 (305)
T ss_pred HHHhccchhhhHHHHHHHHHhccccccCCCeEEEEEeccchhhcCCCcc-ccCcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 4588999999999999998877544446789999999999999875543 33788999999999999999999876 799
Q ss_pred EEEcCCCCChhhhhcC------------------------Cc---cc-------hhhhhhhHHHHHHHHHHHHHHHHHh-
Q 025181 119 IFLSTPPVDEARINQG------------------------TS---EI-------FSELVRTNELCQKYSDACINLCHEL- 163 (256)
Q Consensus 119 i~~~~~p~~~~~~~~~------------------------~~---~~-------~~~~~~~~~~~~~~n~~l~~~~~~~- 163 (256)
++++++..... +... |. ++ ........++.++++++.++++++.
T Consensus 173 iLvgmpd~~~L-~~~~~~r~hplg~~~~~vty~~~y~~lncl~~spC~gw~~~n~t~rn~t~~~a~~l~~~~~~ia~~~~ 251 (305)
T cd01826 173 ILVGLVDGRIL-YDTLHNRLHPIGQLNKDVTYPNLYDYLNCLQVSPCWGWLNSNETLRNLTSERAAQLSNVLKRIAANET 251 (305)
T ss_pred EEEeccchhhh-hhhhccccccchhcccccchhhhhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999873111 1000 00 00 1122345677899999999999987
Q ss_pred ----CCeEEec-hhHhhcc----ccccccc-c-cccccCChhHHHHHHHHHHH
Q 025181 164 ----GVKVVDL-FTAIQKR----DDWKNAC-F-TDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 164 ----~v~~vD~-~~~~~~~----~~~~~~~-~-~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
.+.|+|. .+.+... +.....+ . .||+|||+.|++++|+.+++
T Consensus 252 f~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~lW~ 304 (305)
T cd01826 252 FNNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEVFWK 304 (305)
T ss_pred ccceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHHhhc
Confidence 7888887 4443322 2211122 2 59999999999999999975
No 33
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.77 E-value=1.9e-17 Score=136.10 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=133.4
Q ss_pred eEEEEcccccccccC----------------------CCChHHHHHHHhhc--cccEeecCCCCCchHH-----------
Q 025181 8 QFVLFGSSIVQLSFS----------------------NGGWGAILSDIYAR--KADILLRGYYGWNSRR----------- 52 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~----------------------~~~~~~~l~~~~~~--~~~v~n~g~~G~~s~~----------- 52 (256)
++++||||++..|.. ...|++.|++.++. ...+.|.+.+|+++..
T Consensus 1 ~l~vFGDS~sD~Gn~~~~~~~~~~~~~~~~~~grfsnG~~w~d~la~~lg~~~~~~~~N~A~~Ga~~~~~~~~~~~~~~~ 80 (270)
T cd01846 1 RLVVFGDSLSDTGNIFKLTGGSNPPPSPPYFGGRFSNGPVWVEYLAATLGLSGLKQGYNYAVGGATAGAYNVPPYPPTLP 80 (270)
T ss_pred CeEEeeCccccCCcchhhcCCCCCCCCCCCCCCccCCchhHHHHHHHHhCCCccCCcceeEecccccCCcccCCCCCCCC
Confidence 589999999874420 12489999998874 3478899999987642
Q ss_pred -HHHHhhhhCCCCC--CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChh
Q 025181 53 -ALQVLDQVFPKDA--PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEA 129 (256)
Q Consensus 53 -~~~~~~~~~~~~~--~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~ 129 (256)
+...++..+.... ....++++|++|+||+..............+.+.+++.++++.+... +..+|++++.||+...
T Consensus 81 ~l~~Qv~~f~~~~~~~~~~~~l~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-g~~~i~v~~~p~~~~~ 159 (270)
T cd01846 81 GLSDQVAAFLAAHKLRLPPDTLVAIWIGANDLLNALDLPQNPDTLVTRAVDNLFQALQRLYAA-GARNFLVLNLPDLGLT 159 (270)
T ss_pred CHHHHHHHHHHhccCCCCCCcEEEEEeccchhhhhccccccccccHHHHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCCC
Confidence 2233333221111 23559999999999997632111112345678888899999988864 5667899999998765
Q ss_pred hhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh-------CCeEEechhHhhc---c-c--------------------
Q 025181 130 RINQGTSEIFSELVRTNELCQKYSDACINLCHEL-------GVKVVDLFTAIQK---R-D-------------------- 178 (256)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~-------~v~~vD~~~~~~~---~-~-------------------- 178 (256)
+........ .....+...+.||+.+++.+.+. .+.++|++..+.+ . .
T Consensus 160 P~~~~~~~~--~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~~~~~~~~~ 237 (270)
T cd01846 160 PAFQAQGDA--VAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCLDYVYSYSP 237 (270)
T ss_pred cccccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhcCCCccccc
Confidence 554332211 11467778899999999888753 5789999988543 1 0
Q ss_pred -----ccccccccccccCChhHHHHHHHHHHH
Q 025181 179 -----DWKNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 179 -----~~~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
....+++.|++|||+++|+++|+.+++
T Consensus 238 ~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 238 REACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred cCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 112345789999999999999998865
No 34
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=3.5e-17 Score=130.99 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=127.3
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhcc--ccEeec--CCCCCchHHHHH---HhhhhCCCCCCC-CCcEEEEEe
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARK--ADILLR--GYYGWNSRRALQ---VLDQVFPKDAPI-QPSLVIVYV 76 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~--~~v~n~--g~~G~~s~~~~~---~~~~~~~~~~~~-~pd~vii~~ 76 (256)
-..+|+++|||+++ +...-|.+.+... +.+.++ |-+|..-.++.+ .+.+.+. .+ +|..|++++
T Consensus 115 ~a~kvLvvGDslm~------gla~gl~~al~t~~~i~i~~~sn~SSGlvr~dYfdWpk~i~~~l~---~~~~~a~vVV~l 185 (354)
T COG2845 115 DADKVLVVGDSLMQ------GLAEGLDKALATSPGITIVTRSNGSSGLVRDDYFDWPKAIPELLD---KHPKPAAVVVML 185 (354)
T ss_pred CCCEEEEechHHhh------hhHHHHHHHhccCCCcEEEEeecCCCCcccccccccHHHHHHHHH---hcCCccEEEEEe
Confidence 45789999999997 4455566656542 334433 334433333332 2334443 33 899999999
Q ss_pred ccCCCCCCCCCCCCCCCChh----HHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHH
Q 025181 77 GGNDSMGPHPSGLGPHVPLP----EYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKY 152 (256)
Q Consensus 77 G~ND~~~~~~~~~~~~~~~~----~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
|.||-..-...+.......+ +|.+.+.++++.++. +..+|+|+++|++... .+++.+..+
T Consensus 186 GaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~--~~~~V~WvGmP~~r~~--------------~l~~dm~~l 249 (354)
T COG2845 186 GANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHT--HKVPVLWVGMPPFRKK--------------KLNADMVYL 249 (354)
T ss_pred cCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhcc--cCCcEEEeeCCCcccc--------------ccchHHHHH
Confidence 99998664443334444444 455556666665555 6799999999997543 667889999
Q ss_pred HHHHHHHHHHhCCeEEechhHhhccccc-------------ccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 153 SDACINLCHELGVKVVDLFTAIQKRDDW-------------KNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 153 n~~l~~~~~~~~v~~vD~~~~~~~~~~~-------------~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
|.+.++.++.++=.+||+|+.+.+..+- ......||+|+|.+|.+.+|..+.+.|..
T Consensus 250 n~iy~~~vE~~~gk~i~i~d~~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k~I~~ 319 (354)
T COG2845 250 NKIYSKAVEKLGGKFIDIWDGFVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEKPIRA 319 (354)
T ss_pred HHHHHHHHHHhCCeEEEecccccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHHHHHh
Confidence 9999999999999999999997765422 12334799999999999999999999985
No 35
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.73 E-value=2.5e-16 Score=116.85 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-CCceEEEEcCCCCChhhhhcCCccch-hhhh
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-CATRIIFLSTPPVDEARINQGTSEIF-SELV 143 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-~~~~vi~~~~~p~~~~~~~~~~~~~~-~~~~ 143 (256)
..+.|+|++..|..|+++.. ..+.++|.+|+++++..+++.. +.+.+||.+++|+.+........... ....
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~------~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~ 121 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQ------RNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSK 121 (183)
T ss_pred CCceeEEEEecceecccccC------CCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccc
Confidence 45679999999999998754 2478999999999999999855 78999999999985432221111111 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 144 RTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 144 ~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
.....+.++|...+++++++++.+.|++..|...... ...||+|+++.||+.+++.+++.|
T Consensus 122 ~lr~dv~eaN~~A~~va~~~~~dVlDLh~~fr~~~~~---~~~DgVHwn~~a~r~ls~lll~hI 182 (183)
T cd01842 122 SLRYDVLEGNFYSATLAKCYGFDVLDLHYHFRHAMQH---RVRDGVHWNYVAHRRLSNLLLAHV 182 (183)
T ss_pred cchhHHHHHHHHHHHHHHHcCceeeehHHHHHhHHhh---cCCCCcCcCHHHHHHHHHHHHHhh
Confidence 3456688999999999999999999999998543322 247999999999999999999876
No 36
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.53 E-value=1.4e-13 Score=113.85 Aligned_cols=198 Identities=18% Similarity=0.177 Sum_probs=119.9
Q ss_pred ceEEEEcccccccccC--------------C-CChHHHHHHHhh----------ccccEeecCCCCCchHH---------
Q 025181 7 PQFVLFGSSIVQLSFS--------------N-GGWGAILSDIYA----------RKADILLRGYYGWNSRR--------- 52 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~--------------~-~~~~~~l~~~~~----------~~~~v~n~g~~G~~s~~--------- 52 (256)
++|++||||++..|-. . +.....++..++ ......|.+.+|+++..
T Consensus 2 ~~i~vFGDSl~D~Gn~~~~~~~~~~~gRFsnG~~~~d~~~~~~~~~~~~~~~~~~~~~G~NfA~gGa~~~~~~~~~~~~~ 81 (281)
T cd01847 2 SRVVVFGDSLSDVGTYNRAGVGAAGGGRFTVNDGSIWSLGVAEGYGLTTGTATPTTPGGTNYAQGGARVGDTNNGNGAGA 81 (281)
T ss_pred CceEEecCcccccCCCCccccCCCCCcceecCCcchHHHHHHHHcCCCcCcCcccCCCCceeeccCccccCCCCcccccc
Confidence 5799999999984421 1 123334443332 12345677777776432
Q ss_pred ----HHHHhhhhCCCCC-CCCCcEEEEEeccCCCCCCCCCCCCC---CCC----hhHHHHHHHHHHHHHHhhcCCceEEE
Q 025181 53 ----ALQVLDQVFPKDA-PIQPSLVIVYVGGNDSMGPHPSGLGP---HVP----LPEYVENMRRIATHLKSLSCATRIIF 120 (256)
Q Consensus 53 ----~~~~~~~~~~~~~-~~~pd~vii~~G~ND~~~~~~~~~~~---~~~----~~~~~~~l~~li~~i~~~~~~~~vi~ 120 (256)
+...++....... ...-++++|++|+||........... ... .....+++...++.+.+. +..+|++
T Consensus 82 ~~~~l~~Qv~~f~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~-GAr~ilv 160 (281)
T cd01847 82 VLPSVTTQIANYLAAGGGFDPNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAATAAADLASQVKNLLDA-GARYILV 160 (281)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCeEEEEecChhHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHC-CCCEEEE
Confidence 2222222211111 12458999999999986421110000 011 123345666666666665 6788999
Q ss_pred EcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhC---CeEEechhHhhc----cc---------------
Q 025181 121 LSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG---VKVVDLFTAIQK----RD--------------- 178 (256)
Q Consensus 121 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~---v~~vD~~~~~~~----~~--------------- 178 (256)
++.||+.-.+...... ..+....+.....||+.++...++.+ +.++|++..+.+ +.
T Consensus 161 ~~lpplgc~P~~~~~~--~~~~~~~n~~~~~~N~~L~~~l~~l~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~CC~~~ 238 (281)
T cd01847 161 PNLPDVSYTPEAAGTP--AAAAALASALSQTYNQTLQSGLNQLGANNIIYVDTATLLKEVVANPAAYGFTNTTTPACTST 238 (281)
T ss_pred eCCCCcccCcchhhcc--chhHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEHHHHHHHHHhChHhcCccCCCccccCCC
Confidence 9999986655433221 12345678889999999999877653 789999988533 10
Q ss_pred --------------ccccccccccccCChhHHHHHHHHHHHHH
Q 025181 179 --------------DWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 179 --------------~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
....+++.|++|||+++|+++|+.+++.|
T Consensus 239 ~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~~l 281 (281)
T cd01847 239 SAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALSRL 281 (281)
T ss_pred CccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHHhC
Confidence 01224568999999999999999988754
No 37
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.50 E-value=1.3e-13 Score=115.86 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=89.9
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCCh----hHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCc--cchhh
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPL----PEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTS--EIFSE 141 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~----~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~--~~~~~ 141 (256)
.-++++|++|+||+.............. +....++.+.++.+.+. +..+|+|++.||+.-.+...... ....+
T Consensus 128 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~L~~~-GAr~~~v~~lpplgc~P~~~~~~~~~~~~c 206 (315)
T cd01837 128 SKSLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDL-GARKFVVPGLGPLGCLPSQRTLFGGDGGGC 206 (315)
T ss_pred hCCEEEEEecccccHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHhC-CCcEEEecCCCCcCccHHHHhhcCCCCCCc
Confidence 4489999999999864221100001122 33444555556655554 67889999999987655443221 12345
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh-------CCeEEechhHhhc----cc--------------------------------
Q 025181 142 LVRTNELCQKYSDACINLCHEL-------GVKVVDLFTAIQK----RD-------------------------------- 178 (256)
Q Consensus 142 ~~~~~~~~~~~n~~l~~~~~~~-------~v~~vD~~~~~~~----~~-------------------------------- 178 (256)
....+.....||+.|++..++. ++.++|++..+.+ +.
T Consensus 207 ~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~~~~~C~ 286 (315)
T cd01837 207 LEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPCGSTVCP 286 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCCCCCcCC
Confidence 6678888999999999987653 3788999986422 10
Q ss_pred ccccccccccccCChhHHHHHHHHHHH
Q 025181 179 DWKNACFTDGIHLSEEGSKIVVAEILK 205 (256)
Q Consensus 179 ~~~~~~~~Dg~Hp~~~G~~~ia~~l~~ 205 (256)
....+++.|++|||+++|+++|+.++.
T Consensus 287 ~p~~y~fwD~~HpT~~~~~~ia~~~~~ 313 (315)
T cd01837 287 DPSKYVFWDGVHPTEAANRIIADALLS 313 (315)
T ss_pred CccceEEeCCCChHHHHHHHHHHHHhc
Confidence 011235689999999999999998863
No 38
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.49 E-value=1.2e-13 Score=117.87 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=123.0
Q ss_pred CCceEEEEcccccccccC----------------------CCChHHHHHHHhhccccEeecCCCCCchHHH---------
Q 025181 5 ARPQFVLFGSSIVQLSFS----------------------NGGWGAILSDIYARKADILLRGYYGWNSRRA--------- 53 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~----------------------~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~--------- 53 (256)
..++|++||||++..|.. ...|.+.|+...-......|.+.+|+++...
T Consensus 141 ~~~ai~vFGDSlsDtGnn~y~~t~~~~PPyG~~ftGRFSNG~v~~DfLA~~pyl~~~G~NFA~GGA~~~t~~~~~~~~~~ 220 (408)
T PRK15381 141 DITRLVFFGDSLSDSLGRMFEKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIGDF 220 (408)
T ss_pred CCCeEEEeCCccccCCCccccccccCCCCCCCCCCcccCCCchhhheeccccccCCCCceEeecccccccccccccccCc
Confidence 467899999999986321 0125555552110011346788888775310
Q ss_pred HHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhc
Q 025181 54 LQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQ 133 (256)
Q Consensus 54 ~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~ 133 (256)
...+..++.......-++++|++|+||.... .....+.....+...++.+.+. +..+|+|++.||++-.+...
T Consensus 221 ~~~L~~Qv~~~~~~~~aL~lV~iG~NDy~~~------~~~~v~~vV~~~~~~l~~Ly~l-GARk~vV~nlpPlGC~P~~~ 293 (408)
T PRK15381 221 VSNTDRQVASYTPSHQDLAIFLLGANDYMTL------HKDNVIMVVEQQIDDIEKIISG-GVNNVLVMGIPDLSLTPYGK 293 (408)
T ss_pred cCCHHHHHHHHHhcCCcEEEEEeccchHHHh------HHHHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCCcchhh
Confidence 0112222221112245899999999998521 1112344555566666666654 78899999999987555432
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHHHh-------CCeEEechhHhhc----ccc-----------------------
Q 025181 134 GTSEIFSELVRTNELCQKYSDACINLCHEL-------GVKVVDLFTAIQK----RDD----------------------- 179 (256)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~-------~v~~vD~~~~~~~----~~~----------------------- 179 (256)
.. ......+.....||+.|+...++. ++.|+|.+..+.+ +..
T Consensus 294 ~~----~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~cCg~G~~~~~~~C~p 369 (408)
T PRK15381 294 HS----DEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDP 369 (408)
T ss_pred cc----CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCccccccCCCccCCccccCc
Confidence 21 122466777888999988887653 3778999987533 100
Q ss_pred ----cccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 180 ----WKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 180 ----~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
...+++.|.+|||+++|+++|+.+...|.+.
T Consensus 370 ~~~~C~~YvFWD~vHPTe~ah~iiA~~~~~~i~~~ 404 (408)
T PRK15381 370 QLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHH 404 (408)
T ss_pred ccCCCCceEecCCCCChHHHHHHHHHHHHHHHHHh
Confidence 0123578999999999999999999999874
No 39
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=99.46 E-value=7.1e-12 Score=103.92 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=109.3
Q ss_pred eecCCCCCchHHHHHH-------hhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc
Q 025181 41 LLRGYYGWNSRRALQV-------LDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS 113 (256)
Q Consensus 41 ~n~g~~G~~s~~~~~~-------~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~ 113 (256)
.|.+.+|+.++++... +++..+......+++|+|.+|+||+|.............+.+++++.+.+..++..-
T Consensus 150 lNvA~~Ga~s~Dlp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nv 229 (397)
T KOG3670|consen 150 LNVAEPGAESEDLPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNV 229 (397)
T ss_pred cccccccccchhhHHHHHHHHHHHHhccCcccccceEEEEEEeccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 4778888887765543 444433334567899999999999998665423345677889999999999999999
Q ss_pred CCceEEEEcCCCCChhhhhcC----C--------ccch---hhhhhhHHHHHHHHHHHHHHHHHhCCe-----EE--ech
Q 025181 114 CATRIIFLSTPPVDEARINQG----T--------SEIF---SELVRTNELCQKYSDACINLCHELGVK-----VV--DLF 171 (256)
Q Consensus 114 ~~~~vi~~~~~p~~~~~~~~~----~--------~~~~---~~~~~~~~~~~~~n~~l~~~~~~~~v~-----~v--D~~ 171 (256)
|.+.|.+++++++.-...... + .... ............|++...++.+..... +| -+.
T Consensus 230 PR~iV~lvg~~~~~~l~q~~~~~~~c~~~~~~ec~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f~~~dFtvvvqPf~ 309 (397)
T KOG3670|consen 230 PRTIVSLVGMFNVSLLRQASKLLKFCKRLHRFECPCLLNKNFELADIEGFCYDYQNKEFEIQNNGRFDREDFTVVVQPFF 309 (397)
T ss_pred CceEEEEecCCCHHHHHHhhcccccccccccccCccccccccchhHHHHHHHHHHHHHHHHHhcccccccceeEEeeccc
Confidence 999999999988732211111 1 0000 111123344556666666666543221 11 111
Q ss_pred ----hHhhcccccc-cccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 172 ----TAIQKRDDWK-NACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 172 ----~~~~~~~~~~-~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.+....+.+. ..+..|++|+|+.||.++|+.+|+.|-+.
T Consensus 310 ~~~t~P~l~~g~~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~ep 353 (397)
T KOG3670|consen 310 TDITIPPLPHGRYDLTFFAPDCFHLSQRGHAIAAKHLWNNLFEP 353 (397)
T ss_pred cccCCCcCCCCCCCchhcccCccccchHHHHHHHHHHHHHhhcC
Confidence 1111122222 34568999999999999999999999864
No 40
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.36 E-value=3.6e-11 Score=101.94 Aligned_cols=140 Identities=16% Similarity=0.256 Sum_probs=92.9
Q ss_pred CcEEEEEeccCCCCCC--CCCCCCCCCChhHHHHHH----HHHHHHHHhhcCCceEEEEcCCCCChhhhhcCC--ccchh
Q 025181 69 PSLVIVYVGGNDSMGP--HPSGLGPHVPLPEYVENM----RRIATHLKSLSCATRIIFLSTPPVDEARINQGT--SEIFS 140 (256)
Q Consensus 69 pd~vii~~G~ND~~~~--~~~~~~~~~~~~~~~~~l----~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~--~~~~~ 140 (256)
-.+.+|++|+||.... ...........++|...+ .+.++.+.+. +..+|+|++.||+.-.+..... .....
T Consensus 158 ~sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~-GAR~~~V~~lpplGc~P~~~~~~~~~~~~ 236 (351)
T PLN03156 158 EALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRL-GARKISLGGLPPMGCLPLERTTNLMGGSE 236 (351)
T ss_pred cCeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCCCccccCHHHHhhcCCCCCC
Confidence 3799999999999521 100001122345554443 3445555544 7889999999998655542211 12234
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh-------CCeEEechhHhhc----ccc------------------------------
Q 025181 141 ELVRTNELCQKYSDACINLCHEL-------GVKVVDLFTAIQK----RDD------------------------------ 179 (256)
Q Consensus 141 ~~~~~~~~~~~~n~~l~~~~~~~-------~v~~vD~~~~~~~----~~~------------------------------ 179 (256)
+.+..+.....||+.+++..++. ++.++|.+..+.+ +..
T Consensus 237 C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~~~~~C 316 (351)
T PLN03156 237 CVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRNNPFTC 316 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCCCCCcc
Confidence 66788889999999999887643 4778899988532 100
Q ss_pred --cccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 180 --WKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 180 --~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
-.++++.|++|||+++|+++|+.++..|..
T Consensus 317 ~~p~~yvfWD~~HPTe~a~~~iA~~~~~~l~~ 348 (351)
T PLN03156 317 SDADKYVFWDSFHPTEKTNQIIANHVVKTLLS 348 (351)
T ss_pred CCccceEEecCCCchHHHHHHHHHHHHHHHHH
Confidence 012456899999999999999999998875
No 41
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=98.95 E-value=2.1e-08 Score=81.99 Aligned_cols=141 Identities=20% Similarity=0.192 Sum_probs=93.0
Q ss_pred CCcEEEEEeccCCCCCCCCCC---CCCCCChhHHHHHHHHHHHHHHhhc----CCceEEEEcCCCCChhhh----hcCCc
Q 025181 68 QPSLVIVYVGGNDSMGPHPSG---LGPHVPLPEYVENMRRIATHLKSLS----CATRIIFLSTPPVDEARI----NQGTS 136 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~---~~~~~~~~~~~~~l~~li~~i~~~~----~~~~vi~~~~~p~~~~~~----~~~~~ 136 (256)
.||+||+..|..+........ .......+.|..++..+.+.+++.. |...|+|.+..|...... ...+.
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~ 179 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCN 179 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcC
Confidence 799999999999984311000 0123456888999999998887554 557899988877643322 00000
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHH-HHhCCeEEechhHhhc-cc-c-----cc---ccccccccc-CChhHHHHHHHHHH
Q 025181 137 EIFSELVRTNELCQKYSDACINLC-HELGVKVVDLFTAIQK-RD-D-----WK---NACFTDGIH-LSEEGSKIVVAEIL 204 (256)
Q Consensus 137 ~~~~~~~~~~~~~~~~n~~l~~~~-~~~~v~~vD~~~~~~~-~~-~-----~~---~~~~~Dg~H-p~~~G~~~ia~~l~ 204 (256)
........+..+.++|+.+.+.. ...++.++|++..+.. .. + +. ..-..||+| +.+...+.+.+.|+
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~ 258 (263)
T PF13839_consen 180 -PPRREEITNEQIDELNEALREALKKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLL 258 (263)
T ss_pred -cccccCCCHHHHHHHHHHHHHHhhcCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHH
Confidence 01122245677889999998887 6778999999544322 11 1 10 111379999 99999999999999
Q ss_pred HHHHh
Q 025181 205 KVLKQ 209 (256)
Q Consensus 205 ~~l~~ 209 (256)
..|.+
T Consensus 259 ~~lcn 263 (263)
T PF13839_consen 259 NLLCN 263 (263)
T ss_pred HHhhC
Confidence 88753
No 42
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=98.81 E-value=2.1e-08 Score=83.05 Aligned_cols=181 Identities=15% Similarity=0.226 Sum_probs=111.7
Q ss_pred CCCceEEE--EcccccccccCCCChHHH--HHHHhhcccc--EeecCCCCCchHHHHHHhhhhCC--CCCCCCCcEEEE-
Q 025181 4 PARPQFVL--FGSSIVQLSFSNGGWGAI--LSDIYARKAD--ILLRGYYGWNSRRALQVLDQVFP--KDAPIQPSLVIV- 74 (256)
Q Consensus 4 p~~~~i~~--iGDS~t~g~~~~~~~~~~--l~~~~~~~~~--v~n~g~~G~~s~~~~~~~~~~~~--~~~~~~pd~vii- 74 (256)
|-.+++++ +||++.. +|.+- |...+..+.. +...+.++--..++.. +...+. .....+++.+++
T Consensus 35 p~a~~~lV~vvGD~~a~------~la~g~~l~~~~a~~p~v~v~~~~~~~lvr~d~~d-w~~~i~~~~~~~~~~~~vvv~ 107 (327)
T PF04311_consen 35 PNARRILVRVVGDFLAS------GLADGFYLQEAFADNPDVAVADRVNGSLVRDDYYD-WPEAIAASLIEAEKPAAVVVV 107 (327)
T ss_pred CccceEEEeeccchhhh------hhhhhhHHHHHhccCCCeEEEeecCCCcccccccc-cHHHhhhhhhhccCCceEEEE
Confidence 44567888 9999986 55555 6666664433 3344333311111111 111121 112456666665
Q ss_pred EeccCCCCCCCCCCCCCCCChhHHHHHHHH-HHHHHHhhcCCceEEEEcCC-CCChhhhhcCCccchhhhhhhHHHHHHH
Q 025181 75 YVGGNDSMGPHPSGLGPHVPLPEYVENMRR-IATHLKSLSCATRIIFLSTP-PVDEARINQGTSEIFSELVRTNELCQKY 152 (256)
Q Consensus 75 ~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~-li~~i~~~~~~~~vi~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
++|.||...-...........+.+.+.|.+ +...+++ .+..++|++.| ++... ...+.+..+
T Consensus 108 miG~nDrq~l~~gds~~~~~s~~W~~~Y~~r~~~~i~~--~~vp~~wvglPd~~~~~--------------~~~~d~l~~ 171 (327)
T PF04311_consen 108 MIGSNDRQQLRIGDSQMQFRSPEWLEEYGKRIAKVIRE--LKVPSIWVGLPDYFRWP--------------KMSADMLAL 171 (327)
T ss_pred EeccCCCcccccCCcccccCCHHHHHHHHHHHHHHHHh--cCCCeEEEeCCcccCCh--------------hhhHHHHHh
Confidence 999999866444333344444555555543 4444555 45899999999 65332 345667788
Q ss_pred HHH-HHHHHHHhCCeEEechhHhhccc-cccc-----------ccccccccCChhHHHHHHHHHHHHHHh
Q 025181 153 SDA-CINLCHELGVKVVDLFTAIQKRD-DWKN-----------ACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 153 n~~-l~~~~~~~~v~~vD~~~~~~~~~-~~~~-----------~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
|+. .+..+...+..|+|.|+ |.++. .+.. ....||+|+|.+ ++.+|-.+..-|.+
T Consensus 172 n~~~yr~~a~~~g~~fvDiwd-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~ve~pi~r 239 (327)
T PF04311_consen 172 NDILYRDAAEKAGGGFVDIWD-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYVEKPIMR 239 (327)
T ss_pred cchhHHHHHHHhcCccccccc-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEechHhhh
Confidence 888 88888888999999999 77643 2211 224799999999 99888766655554
No 43
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=98.25 E-value=8.5e-06 Score=67.91 Aligned_cols=131 Identities=14% Similarity=0.223 Sum_probs=83.7
Q ss_pred EEEeccCCCCCCCCCCCCCCCChhHH----HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHH
Q 025181 73 IVYVGGNDSMGPHPSGLGPHVPLPEY----VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNEL 148 (256)
Q Consensus 73 ii~~G~ND~~~~~~~~~~~~~~~~~~----~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
.+..|.||....... .....+.+ +.++...+..+.+. ....|++++.|.....+....- .....+..+.
T Consensus 166 ~~~ggand~~~~~~~---~a~~~q~~~~~~~~~~~~~Vq~L~~A-GA~~i~v~~lpDl~l~P~~~~~---~~~~~~a~~~ 238 (370)
T COG3240 166 FLWGGANDYLALPML---KAAAYQQLEGSTKADQSSAVQRLIAA-GARNILVMTLPDLSLTPAGKAY---GTEAIQASQA 238 (370)
T ss_pred HHhhcchhhhccccc---chhhhHHHhcchhhHHHHHHHHHHHh-hccEEEEeeccccccccccccc---cchHHHHHHH
Confidence 355688998664321 11112222 23456666666664 4556666677765443332211 1112266777
Q ss_pred HHHHHHHHHHHHHHhC--CeEEechhHhhccc----c------------------------------cccccccccccCC
Q 025181 149 CQKYSDACINLCHELG--VKVVDLFTAIQKRD----D------------------------------WKNACFTDGIHLS 192 (256)
Q Consensus 149 ~~~~n~~l~~~~~~~~--v~~vD~~~~~~~~~----~------------------------------~~~~~~~Dg~Hp~ 192 (256)
...||..+.+-.++++ +..+|.+..+.+-. . ..++++.|.+|||
T Consensus 239 t~~~Na~L~~~L~~~g~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~~~~a~~p~~~~~~~~ylFaD~vHPT 318 (370)
T COG3240 239 TIAFNASLTSQLEQLGGNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNPACSASLPALCAAPQKYLFADSVHPT 318 (370)
T ss_pred HHHHHHHHHHHHHHhcCcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCcccccccccccCCccceeeecccCCc
Confidence 8999999999988876 88889988765411 0 0126689999999
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 025181 193 EEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 193 ~~G~~~ia~~l~~~l~~~ 210 (256)
++||++||+.++..|...
T Consensus 319 t~~H~liAeyila~l~ap 336 (370)
T COG3240 319 TAVHHLIAEYILARLAAP 336 (370)
T ss_pred hHHHHHHHHHHHHHHhCc
Confidence 999999999999999653
No 44
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=98.12 E-value=3.7e-05 Score=61.90 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=82.6
Q ss_pred CCCcEEEEEeccCCCCCCCCC--------C------CCCC-----CChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPS--------G------LGPH-----VPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVD 127 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~--------~------~~~~-----~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~ 127 (256)
.+.|++|+.+|+...+..... + .... .+.++..+.+.++++.+++.+|+.+||+. ..|+.
T Consensus 100 ~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilT-VSPVr 178 (251)
T PF08885_consen 100 EEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILT-VSPVR 178 (251)
T ss_pred HhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEE-eccch
Confidence 467999999999866432211 1 1222 56688899999999999999999999775 44443
Q ss_pred hhhhhcCCccchhhhhhhHHH-HHHHHHHHHHHHHHh-CCeEEechhHhhcccccccccccccccCChhHHHHHHHH
Q 025181 128 EARINQGTSEIFSELVRTNEL-CQKYSDACINLCHEL-GVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAE 202 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~n~~l~~~~~~~-~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~ 202 (256)
.....+..... ..|.. -..+-.++.++++++ ++.|+..|+.+.++..-...+-.|-.|||+.|-+.+-+.
T Consensus 179 l~~T~~~~d~~-----~an~~SKs~Lr~a~~~l~~~~~~v~YFPSYEiv~d~lrdyrfy~~D~~Hps~~aV~~I~~~ 250 (251)
T PF08885_consen 179 LIATFRDRDGL-----VANQYSKSTLRAAAHELVRAFDDVDYFPSYEIVMDELRDYRFYAEDMRHPSPQAVDYIWER 250 (251)
T ss_pred hhcccccccch-----hhhhhhHHHHHHHHHHHHhcCCCceEcchHhhccCcccccccccccCCCCCHHHHHHHHhh
Confidence 33211111000 11111 123334455556544 799999999988654332334579999999998877654
No 45
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=98.07 E-value=8.5e-05 Score=53.58 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhccc
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRD 178 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~ 178 (256)
.+.++-+++.+++. ++.++++.+|-. ..+... .....+..+.+.+.++..|+++|+.++|+.. .
T Consensus 35 y~Dl~l~L~~~k~~--g~~~lfVi~PvN--g~wydy-------tG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~-----~ 98 (130)
T PF04914_consen 35 YDDLQLLLDVCKEL--GIDVLFVIQPVN--GKWYDY-------TGLSKEMRQEYYKKIKYQLKSQGFNVADFSD-----D 98 (130)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE------HHHHHH-------TT--HHHHHHHHHHHHHHHHTTT--EEE-TT-----G
T ss_pred HHHHHHHHHHHHHc--CCceEEEecCCc--HHHHHH-------hCCCHHHHHHHHHHHHHHHHHCCCEEEeccc-----C
Confidence 45789999999995 588888866643 222211 1123456788899999999999999999966 3
Q ss_pred ccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 179 DWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 179 ~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
.+...++.|-+||+.+|=-.+-+.|.+.+.+
T Consensus 99 ~y~~yfm~D~iHlgw~GWv~vd~~i~~f~~~ 129 (130)
T PF04914_consen 99 EYEPYFMQDTIHLGWKGWVYVDQAIYPFYKE 129 (130)
T ss_dssp TTSTTSBSSSSSB-THHHHHHHHHHHHHHHS
T ss_pred CCCCceeeecccCchhhHHHHHHHHHHHHhc
Confidence 3445578999999999999999999998864
No 46
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=98.05 E-value=0.00027 Score=59.34 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=119.0
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc---CCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG---NDS 81 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~---ND~ 81 (256)
.+..++++|||-+- .++. ..+.+.++ ...+.|.+.+|.+..-..-++++.++. ..+||+|++..-- |+.
T Consensus 62 ~kk~~~~fG~SRs~-~F~~----~~i~~~~~-dw~~yNFS~P~~~P~y~~y~le~i~~~--g~kPd~v~le~sp~~Fn~~ 133 (345)
T PF07611_consen 62 DKKLLVVFGSSRSL-PFSN----EYIEKKYP-DWEVYNFSVPGGTPAYYLYWLEKILED--GIKPDFVILEVSPEGFNKN 133 (345)
T ss_pred CceEEEEEecCccc-ccCh----HHHHhhCC-CCeEEEecCCCCchHHHHHHHHHHHhC--CCCCCEEEEEcCHhHhcCC
Confidence 45569999999884 4422 23445543 678999999999998888888888875 5699999998644 544
Q ss_pred C--------------------------------------------------------------------------CCCCC
Q 025181 82 M--------------------------------------------------------------------------GPHPS 87 (256)
Q Consensus 82 ~--------------------------------------------------------------------------~~~~~ 87 (256)
. ....+
T Consensus 134 s~~~~~~~L~y~~d~~Fil~~~d~~s~~d~~~y~~~rlF~~~~~~p~~~~i~~r~k~~~~~~~~~~~~~~~~~L~~~~~~ 213 (345)
T PF07611_consen 134 SGFFKDYNLRYSFDPRFILRHADRFSKDDVDYYFAKRLFATSRYPPRLKNISARIKNKKLEAYEKLRELTIRNLKKGEGN 213 (345)
T ss_pred cchhhcchhhcCCCHHHHHHHHHhcCHHHHHHHHHHHhheeeccCCCHHHHHHHhcCcchhhHHHHHHHHHHHHHhcccc
Confidence 0 00000
Q ss_pred -----CCCCCCCh---------------------hHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhh
Q 025181 88 -----GLGPHVPL---------------------PEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSE 141 (256)
Q Consensus 88 -----~~~~~~~~---------------------~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~ 141 (256)
+.....+. +.-..-++++++.+++. +++++++.+.-. ... ..
T Consensus 214 ~~~~~~~~~~~d~ekL~~~s~~~~~~~l~~f~~s~~q~~F~e~~L~~ake~--~I~~vl~~P~V~-~~~---------~~ 281 (345)
T PF07611_consen 214 AFSPFSPYVENDPEKLEKSSERIFKWYLSSFTFSETQFFFLEKFLKLAKEN--GIPVVLWWPKVS-PPY---------EK 281 (345)
T ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHc--CCcEEEEEeccC-HHH---------HH
Confidence 00001111 23335677888888885 477777765432 111 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 142 LVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 142 ~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
..+.......+...+++++++.++.++|+..- +.+....+.|+-|.++..+.-.++.|.+.+
T Consensus 282 ~~~~~~~~~~w~~~i~~l~~~~~~~~~dmn~d----~~~~C~~F~D~~HlS~~Cy~e~~~~l~~~~ 343 (345)
T PF07611_consen 282 LYKELKVYESWWPIIKKLAKEYGIPFLDMNED----PSYKCDDFSDASHLSPDCYPELMDILFKRY 343 (345)
T ss_pred HHHhhchhhHHHHHHHHHHhcCCceEecccCC----CCcchhhccCccccCcccchHHHHHHHHhc
Confidence 12334446778888899999999999999771 223444578999999999999999988765
No 47
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=95.65 E-value=0.18 Score=41.03 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=70.5
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCCCChhhhhcCCccchhhhhhh
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS--CATRIIFLSTPPVDEARINQGTSEIFSELVRT 145 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~ 145 (256)
..+-|+..-|-+|. . ...|.+.+.++++.+|+.. ++.+++++...+.......+. ..
T Consensus 143 ~i~gvlW~QGEsD~-~-----------~~~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~~---------~~ 201 (255)
T PF03629_consen 143 GIKGVLWYQGESDA-N-----------AEAYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEPA---------GI 201 (255)
T ss_dssp EEEEEEEE--GGGS-S-----------CTCHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHHC---------CT
T ss_pred ceEEEEEeCCCCCC-C-----------HHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCcc---------cc
Confidence 44677888899997 3 1389999999999999887 789999998887643322110 01
Q ss_pred HHHHHHHHHHHHHHHHH-hCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 146 NELCQKYSDACINLCHE-LGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 146 ~~~~~~~n~~l~~~~~~-~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
+..-..++++.++++++ .++.+|+... ..|..|+++.+++.++++++..+.+
T Consensus 202 ~~~~~~vr~aQ~~~~~~~~~~~~v~t~d------------~~~~~~i~~~~~~~~G~R~a~~al~ 254 (255)
T PF03629_consen 202 NEGWAEVREAQRRVAEEDPNTGMVSTSD------------LGDPDDIHPAGKRELGERLAEAALR 254 (255)
T ss_dssp -TTHHHHHHHHHHHHHHSTTEEEEE-TT-------------B-TTSS-HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCEEEEEccC------------CCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 12234556666677754 3677776544 1466788999999999999987764
No 48
>PF14286 DHHW: DHHW protein
Probab=92.01 E-value=1.2 Score=38.57 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhccc
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRD 178 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~ 178 (256)
.+.....|+.+.+..+++.|.++..|.-.. ...+...... . ........+.+..... .+|.+||+++.+..+.
T Consensus 153 ~~~~a~~in~~a~~l~~~~vy~mlvPta~~-i~~~~~~~~~-~----~~dq~~~i~~~~~~L~-~~I~~ID~~~~L~~hk 225 (378)
T PF14286_consen 153 VDKYASAINSFAKKLPNINVYFMLVPTASE-IYLPDLPKYA-P----SYDQKQNIDYIYSMLD-KNIKFIDVYDTLKKHK 225 (378)
T ss_pred HHHHHHHHHHHHHHCCCCceEEEEccChhh-hcCccccchh-c----cccHHHHHHHHHHHhh-cCceEEehHHHHhhcc
Confidence 344455666677777889998887774321 1111110000 0 0111122222222222 3799999999998765
Q ss_pred ccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 179 DWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 179 ~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
...-++-.| -|.|..|.-...+.+++.+.
T Consensus 226 ~E~iYyrTD-HHWt~~GAyyay~~~~~~~g 254 (378)
T PF14286_consen 226 DEYIYYRTD-HHWTTLGAYYAYQEFAKSMG 254 (378)
T ss_pred ccceEeecc-CCcccchHHHHHHHHHHHcC
Confidence 432223345 79999999999898887764
No 49
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=88.64 E-value=4.7 Score=34.19 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCC-eEEechhHhhccc
Q 025181 100 ENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGV-KVVDLFTAIQKRD 178 (256)
Q Consensus 100 ~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v-~~vD~~~~~~~~~ 178 (256)
..+.-+++.+++ .++.|+++.+|-.. .+.... ....+..+.|-+-++...+..|. .+.|+.. .
T Consensus 295 ~Dlqlll~~f~k--agadv~FV~~PvNg--kW~dYt-------G~~k~~~q~~y~Kik~Ql~sqGF~~iaDfs~-----~ 358 (415)
T COG3966 295 QDLQLLLDTFKK--AGADVIFVIIPVNG--KWYDYT-------GLNKDGRQAYYKKIKSQLRSQGFTQIADFSD-----D 358 (415)
T ss_pred ccHHHHHHHHHh--cCCCeEEEecCCCC--ceeccc-------CcCHHHHHHHHHHHHHHHHHcCceeehhhhc-----c
Confidence 457788888888 45888888776532 222111 01223345566666666677777 4555533 2
Q ss_pred ccccccccccccCChhHHHHHHHHHHHHHHhc
Q 025181 179 DWKNACFTDGIHLSEEGSKIVVAEILKVLKQA 210 (256)
Q Consensus 179 ~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~ 210 (256)
.+..+++.|-+|..=.|--.+-+.|.+.++..
T Consensus 359 ~~epyfm~DtIHlGWkGWv~~Dkai~~F~ktp 390 (415)
T COG3966 359 GYEPYFMKDTIHLGWKGWVAFDKAIAKFMKTP 390 (415)
T ss_pred CCCcceeccceeecchhHHHHHHHHHHHhcCC
Confidence 34456678999999999999999999999854
No 50
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=86.17 E-value=5.5 Score=32.89 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhc-CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhC---C
Q 025181 90 GPHVPLPEYVENMRRIATHLKSLS-CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELG---V 165 (256)
Q Consensus 90 ~~~~~~~~~~~~l~~li~~i~~~~-~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~---v 165 (256)
.++...+--.+.|..+++.|++.+ |+++|.+++- ...+.. .+....+.+.+|.+.+++++.+.+ +
T Consensus 33 lPD~gEelaL~~L~~lc~~I~~vY~PGa~v~I~SD-----G~Vf~D------llgV~D~~v~~Y~~~Lr~l~~~~~~~~I 101 (278)
T PF05141_consen 33 LPDKGEELALRRLNGLCQAIEAVYPPGAKVTIISD-----GHVFND------LLGVPDEEVWAYGEALRELAEEKGLDHI 101 (278)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHSTT-EEEEEE-------HHHHGG------GTT--HHHHHHHHHHHHHHHHHCT-TTE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec-----CcEecc------ccCCCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 344445566778999999999888 8999988852 222221 222456778999999999999876 7
Q ss_pred eEEechhH
Q 025181 166 KVVDLFTA 173 (256)
Q Consensus 166 ~~vD~~~~ 173 (256)
.|+++.+.
T Consensus 102 ~f~~l~dl 109 (278)
T PF05141_consen 102 KFFRLEDL 109 (278)
T ss_dssp EEE-GGG-
T ss_pred EEeCHHHh
Confidence 77777666
No 51
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.45 E-value=5.5 Score=35.36 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCeEEechhHhhccccccc--ccccccccCCh-hHHHHHHHHHHHHHHh
Q 025181 150 QKYSDACINLCHELGVKVVDLFTAIQKRDDWKN--ACFTDGIHLSE-EGSKIVVAEILKVLKQ 209 (256)
Q Consensus 150 ~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~--~~~~Dg~Hp~~-~G~~~ia~~l~~~l~~ 209 (256)
.++.+.+..++.+.+++++|....+.+-+.... .---|-.|.|+ .|.++.++.+...|+.
T Consensus 211 arLIArV~aiAaR~dVp~vDPt~Lm~dwGQaRaLe~~GlDltHYTP~Fa~~iv~~~fkg~in~ 273 (831)
T PRK15180 211 SRLIKNVDTIAARMDIPCVNPTNLMEKWGQKRALEKNGDDLTHYTDMFGDAIVAAIFKGVINN 273 (831)
T ss_pred HHHHHHHHHHHhcCCCcccCchhhhcccchhhcccCCCCCcccCChHHHHHHHHHHHhcccCC
Confidence 455566677788899999999888776543321 11235579999 8888888888888875
No 52
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.88 E-value=11 Score=36.12 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh-CCeEEechhHhhcc
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL-GVKVVDLFTAIQKR 177 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~-~v~~vD~~~~~~~~ 177 (256)
...++.+|+..++ .+.+||-+..|- .+.+..... .+....-+.....+-+.++.+.+.+ ++.++|-+.. . .
T Consensus 807 ~~~l~~~i~~~~~--~~~~~ig~~~p~---~p~y~~t~~-fg~~g~~rs~a~~~~~~~~~~~~~y~~f~~~denk~-g-~ 878 (912)
T TIGR02171 807 MNSLKAFIDETAK--KGVKVIGTIFPQ---SPGYKNTGS-FGRYGPRRSIAKKIIDSFKKMEKTYPHFILFDENKD-G-L 878 (912)
T ss_pred HHHHHHHHHHHHh--CCCEEEEEECCC---CCCccccCc-ccccCcchhhHHHHHHHHHHHHhhCCceEEEecCcC-C-c
Confidence 3445555555555 457776665442 112211111 1111122233455555666666665 6788887652 2 2
Q ss_pred cccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 178 DDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 178 ~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
+++...+..|.-|++..|.+++..+|-..|++
T Consensus 879 hdy~~~ma~~~dhl~~~ga~~~t~rldsll~~ 910 (912)
T TIGR02171 879 HDYTDDMANNSDHLSDEGAKQFTYRLDSLLKK 910 (912)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHhc
Confidence 34666667899999999999999999888775
No 53
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=81.01 E-value=0.13 Score=39.86 Aligned_cols=145 Identities=11% Similarity=0.068 Sum_probs=87.2
Q ss_pred eecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEec-cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEE
Q 025181 41 LLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVG-GNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRII 119 (256)
Q Consensus 41 ~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G-~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi 119 (256)
.| |+++++++++..+++..-- ....+++++.+.| +|--.. ++++....+...+..+.+..+.+++|
T Consensus 54 cN-Gh~~c~t~~v~~~~~N~~~--g~~c~kc~~g~~GdtN~g~c----------~~~~~~g~~~~~~~~~~~c~c~~kgv 120 (217)
T KOG1388|consen 54 CN-GHSDCNTQHVCWRCENGTT--GAHCEKCIVGFYGDTNGGKC----------QPCDCNGGASACVTLTGKCFCTTKGV 120 (217)
T ss_pred hc-CCCCcccceeeeeccCccc--cccCCceEEEEEecCCCCcc----------CHhhhcCCeeeeeccCCccccccceE
Confidence 47 9999999988888665332 2567899999999 776532 24555555666666677777889999
Q ss_pred EEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhcccccc-cccccccccCChhHHHH
Q 025181 120 FLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQKRDDWK-NACFTDGIHLSEEGSKI 198 (256)
Q Consensus 120 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~-~~~~~Dg~Hp~~~G~~~ 198 (256)
+...-|..+....-. ..+.....|-..+.. ..+.+.+++....|.....+. ..-+.|-.|++.+|+..
T Consensus 121 vgd~c~~~e~~N~~r---------~~~~kgtcyy~l~id--~~ftf~l~~~d~~fv~sd~~i~~~d~fd~~~~~~~g~~~ 189 (217)
T KOG1388|consen 121 VGDLCPKCEVPNRYR---------GKPLKGTCYYELLID--GQFTFHLLQEDDGFVTSDNFISTHDMFDYLHLTNAGNTF 189 (217)
T ss_pred ecccCcccccccccc---------cCccccceeeeeecc--cccccceeecCCCceeeccccccCCcccchhhccCCCce
Confidence 998887655432111 001111111111111 122455555544443322221 11145789999999999
Q ss_pred HHHHHHHHHHh
Q 025181 199 VVAEILKVLKQ 209 (256)
Q Consensus 199 ia~~l~~~l~~ 209 (256)
+...+++.+-+
T Consensus 190 ic~~~~~l~~~ 200 (217)
T KOG1388|consen 190 ICNPLWELYFS 200 (217)
T ss_pred ecchHHHHHhh
Confidence 99888877765
No 54
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=80.76 E-value=13 Score=30.34 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=50.9
Q ss_pred EeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHhhcCCceE
Q 025181 40 ILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVENMRRIATHLKSLSCATRI 118 (256)
Q Consensus 40 v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~~l~~li~~i~~~~~~~~v 118 (256)
+++.+..|... ...++++ .+||+++|....++.-.-.. ...+.. ...+..+=..++...++. +...+
T Consensus 67 Vv~q~vpGt~~--af~kIke-------kRpDIl~ia~~~~EDp~~i~--~~aDi~~~~D~~~~G~~i~~~Ak~m-GAktF 134 (275)
T PF12683_consen 67 VVSQAVPGTAE--AFRKIKE-------KRPDILLIAGEPHEDPEVIS--SAADIVVNPDEISRGYTIVWAAKKM-GAKTF 134 (275)
T ss_dssp EEE-SS---HH--HHHHHHH-------H-TTSEEEESS--S-HHHHH--HHSSEEEE--HHHHHHHHHHHHHHT-T-S-E
T ss_pred EEeCCCcchHH--HHHHHHh-------cCCCeEEEcCCCcCCHHHHh--hccCeEeccchhhccHHHHHHHHHc-CCceE
Confidence 45666666443 3334443 47899999987665310000 000000 123344445666666776 45555
Q ss_pred EEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 119 IFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 119 i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
|.++.|-. ...+.+.+..+.+++.|++.|+.|+....+
T Consensus 135 Vh~sfprh-----------------ms~~~l~~Rr~~M~~~C~~lGi~fv~~taP 172 (275)
T PF12683_consen 135 VHYSFPRH-----------------MSYELLARRRDIMEEACKDLGIKFVEVTAP 172 (275)
T ss_dssp EEEEETTG-----------------GGSHHHHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred EEEechhh-----------------cchHHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 55544321 224556777889999999999999988654
No 55
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=80.48 E-value=17 Score=25.51 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=49.3
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHH--HHHHhhhhCCCCCCCCCcEEEEEeccCCCCC
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRR--ALQVLDQVFPKDAPIQPSLVIVYVGGNDSMG 83 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~--~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~ 83 (256)
++|+++|.|... +.|...+-+.+.+ .+++.-..-.+..... +...+.+ . ...+|++++...
T Consensus 1 ksiAVvGaS~~~-----~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~----p~~iDlavv~~~------ 64 (116)
T PF13380_consen 1 KSIAVVGASDNP-----GKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-I----PEPIDLAVVCVP------ 64 (116)
T ss_dssp -EEEEET--SST-----TSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-C----SST-SEEEE-S-------
T ss_pred CEEEEEcccCCC-----CChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccC-C----CCCCCEEEEEcC------
Confidence 579999999654 3455444444432 2344432222222111 1222332 1 468899998874
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 025181 84 PHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL 163 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~ 163 (256)
.+.+.++++.+.++. ++-+|+.+- ..++.+.+.|+++
T Consensus 65 ---------------~~~~~~~v~~~~~~g--~~~v~~~~g--------------------------~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 65 ---------------PDKVPEIVDEAAALG--VKAVWLQPG--------------------------AESEELIEAAREA 101 (116)
T ss_dssp ---------------HHHHHHHHHHHHHHT---SEEEE-TT--------------------------S--HHHHHHHHHT
T ss_pred ---------------HHHHHHHHHHHHHcC--CCEEEEEcc--------------------------hHHHHHHHHHHHc
Confidence 334455555555543 566666433 2345566778888
Q ss_pred CCeEEec
Q 025181 164 GVKVVDL 170 (256)
Q Consensus 164 ~v~~vD~ 170 (256)
++.++-.
T Consensus 102 gi~vigp 108 (116)
T PF13380_consen 102 GIRVIGP 108 (116)
T ss_dssp T-EEEES
T ss_pred CCEEEeC
Confidence 9988844
No 56
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=74.54 E-value=16 Score=32.57 Aligned_cols=21 Identities=5% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCeEEechh
Q 025181 152 YSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 152 ~n~~l~~~~~~~~v~~vD~~~ 172 (256)
..+.+.+.|+++++.++-.+.
T Consensus 109 ~~~~l~~~a~~~girvlGPnc 129 (447)
T TIGR02717 109 LEQELVEIARKYGMRLLGPNC 129 (447)
T ss_pred HHHHHHHHHHHcCCEEEecCe
Confidence 345677888888888775544
No 57
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=36 Score=26.54 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=50.0
Q ss_pred eEEEEccccccc-----ccCCCChHHHHHHHhhccccEeecCCCCCc------hHHHHHHhhhhCCCCCCCCCcEEEEEe
Q 025181 8 QFVLFGSSIVQL-----SFSNGGWGAILSDIYARKADILLRGYYGWN------SRRALQVLDQVFPKDAPIQPSLVIVYV 76 (256)
Q Consensus 8 ~i~~iGDS~t~g-----~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~------s~~~~~~~~~~~~~~~~~~pd~vii~~ 76 (256)
+|+++|||-.-- .+..+.|........+-.+...+.-+-|-+ -.-..+|+..+.... .....-||+.+
T Consensus 11 KiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~sy-YR~ahGii~vy 89 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSY-YRGAHGIIFVY 89 (205)
T ss_pred EEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhh-ccCCCeEEEEE
Confidence 699999995510 123445555555444422222222222221 000113333332211 23456666666
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-CCceEEEEcCC
Q 025181 77 GGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 77 G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
-.-+ .+-..++..-+..+++.. .++.+++++.-
T Consensus 90 DiT~---------------~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK 123 (205)
T KOG0084|consen 90 DITK---------------QESFNNVKRWIQEIDRYASENVPKLLVGNK 123 (205)
T ss_pred Eccc---------------HHHhhhHHHHHHHhhhhccCCCCeEEEeec
Confidence 4333 444567788888888776 45567777654
No 58
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=69.17 E-value=72 Score=27.20 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhc---CCcc------
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQ---GTSE------ 137 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~---~~~~------ 137 (256)
..||.|- +| |.+...-..........+.+.+-+.+-++.+|+..|+++|++-...+.......- ....
T Consensus 124 ~~pd~VQ--VG-NEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~D 200 (332)
T PF07745_consen 124 VTPDMVQ--VG-NEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFD 200 (332)
T ss_dssp --ESEEE--ES-SSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-S
T ss_pred CCccEEE--eC-ccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcc
Confidence 4566654 45 7664322221122344567777788888999999999999888665543211100 0000
Q ss_pred --chhhhhhhHHHHHHHHHHHHHHHHHhC--CeEEechhHhhc--cccccccc----ccccccCChhHHHHHHHHHHHHH
Q 025181 138 --IFSELVRTNELCQKYSDACINLCHELG--VKVVDLFTAIQK--RDDWKNAC----FTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 138 --~~~~~~~~~~~~~~~n~~l~~~~~~~~--v~~vD~~~~~~~--~~~~~~~~----~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
..+..-.....+..+...+..++++++ |-++...-++.. ........ ...++=.|++|.+.+-..|.+.+
T Consensus 201 viGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v 280 (332)
T PF07745_consen 201 VIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAV 280 (332)
T ss_dssp EEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 001111222256677777777777775 555555544431 11111111 24678889999999999999999
Q ss_pred Hh
Q 025181 208 KQ 209 (256)
Q Consensus 208 ~~ 209 (256)
++
T Consensus 281 ~~ 282 (332)
T PF07745_consen 281 KN 282 (332)
T ss_dssp HT
T ss_pred HH
Confidence 97
No 59
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=67.01 E-value=20 Score=29.05 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
...+...++.++....+..+|++...-.-...... ......+....+.++.+|+++++++|=+.+.
T Consensus 114 ~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~---------~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 114 IDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS---------DNRRQEIGEISRELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS---------SCCHHHHHHHHHHHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC---------CCHHHHHHHHHHHHHHHHHHcCCeEEEcccc
Confidence 34445555555555467788888765432111100 0223557788889999999999999977654
No 60
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.71 E-value=57 Score=28.33 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHh---CCeEEechhHhhcc
Q 025181 101 NMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHEL---GVKVVDLFTAIQKR 177 (256)
Q Consensus 101 ~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~---~v~~vD~~~~~~~~ 177 (256)
.-+.+++.++++.-..-+.+...||..-.....................++|...|.++++.+ ||.|=.+ ++|.++
T Consensus 105 gQrwfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~I-sP~NEP 183 (384)
T PF14587_consen 105 GQRWFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYI-SPFNEP 183 (384)
T ss_dssp HHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEE-E--S-T
T ss_pred HHHHHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCcccee-CCcCCC
Confidence 445577777876444444455556643211110000000000011223556666666666654 5433222 335444
Q ss_pred c-ccccccccccccCChhHHHHHHHHHHHHHHhcc
Q 025181 178 D-DWKNACFTDGIHLSEEGSKIVVAEILKVLKQAE 211 (256)
Q Consensus 178 ~-~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~ 211 (256)
. .| ..-...|.|.+.+=...+...|.+.|++.+
T Consensus 184 ~~~W-~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 184 QWNW-AGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp TS-G-G--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-CCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3 23 111257899999999999999999999864
No 61
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=64.22 E-value=64 Score=24.78 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|.+++.+...|. + -.++++..++.+++..+++.+++++.-
T Consensus 77 ~~ad~illVfD~t~~--------------~-Sf~~~~~w~~~i~~~~~~~piilVGNK 119 (189)
T cd04121 77 RGAQGIILVYDITNR--------------W-SFDGIDRWIKEIDEHAPGVPKILVGNR 119 (189)
T ss_pred cCCCEEEEEEECcCH--------------H-HHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 467999999987773 2 233445666666666678888888743
No 62
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=62.81 E-value=21 Score=26.12 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCh-hHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPL-PEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~-~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|..- .+..+. +.+..| ++++.+.+.+..|+..+++++.|
T Consensus 68 ~~aDivvitag~~~---------~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPR---------KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSS---------STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred ccccEEEEeccccc---------cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 35699998888531 122223 333333 66777888888899988888655
No 63
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=61.38 E-value=16 Score=25.16 Aligned_cols=29 Identities=34% Similarity=0.596 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 96 PEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+.|.+||.++++.+++. ++..|-++..+.
T Consensus 4 ~~Fv~Nm~~Iv~~l~~~-~~~~I~iv~~~D 32 (103)
T PF06935_consen 4 PEFVENMKKIVERLRND-PGEPIEIVDGPD 32 (103)
T ss_pred HHHHHHHHHHHHHHHHC-CCCCEEEEECcC
Confidence 78999999999999873 888898888775
No 64
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.48 E-value=81 Score=24.74 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc-C-CceEEEEcC
Q 025181 54 LQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS-C-ATRIIFLST 123 (256)
Q Consensus 54 ~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~-~-~~~vi~~~~ 123 (256)
.+++..+++... -..+++||.+-.+|... .++..+.++.++..+ . ++.|++++.
T Consensus 81 QERFrslipsY~-Rds~vaviVyDit~~~S---------------fe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 81 QERFRSLIPSYI-RDSSVAVIVYDITDRNS---------------FENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred HHHHhhhhhhhc-cCCeEEEEEEeccccch---------------HHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 455555554432 35688888888877522 345566666666554 3 355555554
No 65
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=59.90 E-value=38 Score=25.80 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhH
Q 025181 147 ELCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
....+.-+.+.++|+++++.++ +-+..+... +-.||+|+++..
T Consensus 39 ~~~~~~a~~l~~~~~~~~~~liin~~~~la~~------~~~dGvHl~~~~ 82 (180)
T PF02581_consen 39 EELLELARRLAELCQKYGVPLIINDRVDLALE------LGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTGCEEEES-HHHHHH------CT-SEEEEBTTS
T ss_pred cHHHHHHHHHHHHhhcceEEEEecCCHHHHHh------cCCCEEEecccc
Confidence 3455666777788988876554 332222221 126999988754
No 66
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.21 E-value=19 Score=27.25 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCC-chHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGW-NSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~-~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
...+|+++|+|--. .......|.+.++ ++.++.. ..|. +.......++.+- ..+||+|++.+|.
T Consensus 47 ~~~~ifllG~~~~~----~~~~~~~l~~~yP-~l~ivg~-~~g~f~~~~~~~i~~~I~----~~~pdiv~vglG~ 111 (172)
T PF03808_consen 47 RGKRIFLLGGSEEV----LEKAAANLRRRYP-GLRIVGY-HHGYFDEEEEEAIINRIN----ASGPDIVFVGLGA 111 (172)
T ss_pred cCCeEEEEeCCHHH----HHHHHHHHHHHCC-CeEEEEe-cCCCCChhhHHHHHHHHH----HcCCCEEEEECCC
Confidence 34689999988432 1123334555443 2333322 2232 2222223333332 5789999999994
No 67
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.50 E-value=77 Score=24.93 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHhhcC-CceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechh
Q 025181 96 PEYVENMRRIATHLKSLSC-ATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~ 172 (256)
+.-.+++...++.+.+..+ ++.+++++.---.+. .+ ... -+.-+++|.++|+.|.....
T Consensus 97 e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~--~R----------~V~------~e~ge~lA~e~G~~F~EtSA 156 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE--KR----------QVS------KERGEALAREYGIKFFETSA 156 (207)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc--cc----------ccc------HHHHHHHHHHhCCeEEEccc
Confidence 4445677778888888764 778888875432111 00 011 12234778999999887743
No 68
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=57.40 E-value=21 Score=28.53 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCCchHHHHHHhhhhCC-CCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 46 YGWNSRRALQVLDQVFP-KDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 46 ~G~~s~~~~~~~~~~~~-~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
+|.+....+..+++.+. ......||+|+...|+.=. -...- .....+++.+.+.=+.+++..|.+. .+++.++.-
T Consensus 225 ~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiL-eGDpL-G~L~ISp~Gi~~RDelVFr~~R~~~--iPvvMltSG 300 (324)
T KOG1344|consen 225 NGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDIL-EGDPL-GNLAISPEGIIERDELVFRTFRALG--IPVVMLTSG 300 (324)
T ss_pred cCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccc-cCCCC-CCeeecccccchhhHHHHHHHHHcC--CcEEEEecC
Confidence 34444555555544332 2246789999999997533 22111 1356778888888888899999964 777776543
No 69
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.34 E-value=25 Score=26.62 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=31.2
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCch-HHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNS-RRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s-~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
..+|+++|.+-.. .......+.+.++ ++++... ..|.-. ......++. + ...+||+|++.+|.
T Consensus 46 ~~~v~llG~~~~~----~~~~~~~l~~~yp-~l~i~g~-~~g~~~~~~~~~i~~~-I---~~~~pdiv~vglG~ 109 (171)
T cd06533 46 GLRVFLLGAKPEV----LEKAAERLRARYP-GLKIVGY-HHGYFGPEEEEEIIER-I---NASGADILFVGLGA 109 (171)
T ss_pred CCeEEEECCCHHH----HHHHHHHHHHHCC-CcEEEEe-cCCCCChhhHHHHHHH-H---HHcCCCEEEEECCC
Confidence 4678899887432 1122233444443 2333321 233322 222222233 2 25689999999993
No 70
>PLN02629 powdery mildew resistance 5
Probab=55.59 E-value=6.5 Score=34.05 Aligned_cols=59 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCcEEEEEeccCCCCCC-------CCCCC--CCCC-ChhHHHHHHHHHHHHHHhhc--CCceEEEEcCCCC
Q 025181 68 QPSLVIVYVGGNDSMGP-------HPSGL--GPHV-PLPEYVENMRRIATHLKSLS--CATRIIFLSTPPV 126 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~-------~~~~~--~~~~-~~~~~~~~l~~li~~i~~~~--~~~~vi~~~~~p~ 126 (256)
..|++|+.-|..=.... ...+. .... ....|...++...+-+.... .+..|++-+..|.
T Consensus 205 ~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~ 275 (387)
T PLN02629 205 DADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPT 275 (387)
T ss_pred cCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcc
Confidence 45999999886522110 00010 1111 23467777777777665432 3566888888774
No 71
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=55.54 E-value=38 Score=24.64 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC-CceEEEEcCCCCChhhhhcCCccchhhhhhh
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSC-ATRIIFLSTPPVDEARINQGTSEIFSELVRT 145 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~ 145 (256)
.+.|.+++.+..+| ++-.+++...+..++...+ +..+++++.-.-... .. ..
T Consensus 70 ~~~~~~ii~fd~~~---------------~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~--~~----------~v 122 (162)
T PF00071_consen 70 RNSDAIIIVFDVTD---------------EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD--ER----------EV 122 (162)
T ss_dssp TTESEEEEEEETTB---------------HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG--GS----------SS
T ss_pred cccccccccccccc---------------cccccccccccccccccccccccceeeeccccccc--cc----------cc
Confidence 46789999998777 3445556688888877776 578888864431111 00 00
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEechh
Q 025181 146 NELCQKYSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 146 ~~~~~~~n~~l~~~~~~~~v~~vD~~~ 172 (256)
. .+..+++|++++++|+....
T Consensus 123 ~------~~~~~~~~~~~~~~~~e~Sa 143 (162)
T PF00071_consen 123 S------VEEAQEFAKELGVPYFEVSA 143 (162)
T ss_dssp C------HHHHHHHHHHTTSEEEEEBT
T ss_pred h------hhHHHHHHHHhCCEEEEEEC
Confidence 1 12234677888899988753
No 72
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=55.29 E-value=68 Score=22.28 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=40.3
Q ss_pred cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC-C
Q 025181 37 KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSC-A 115 (256)
Q Consensus 37 ~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~-~ 115 (256)
.+++.+.| ...+.+.+...+. ..+||+|.+++-. ......+.++++.+++..+ +
T Consensus 27 G~~V~~lg-~~~~~~~l~~~~~-------~~~pdvV~iS~~~-----------------~~~~~~~~~~i~~l~~~~~~~ 81 (119)
T cd02067 27 GFEVIDLG-VDVPPEEIVEAAK-------EEDADAIGLSGLL-----------------TTHMTLMKEVIEELKEAGLDD 81 (119)
T ss_pred CCEEEECC-CCCCHHHHHHHHH-------HcCCCEEEEeccc-----------------cccHHHHHHHHHHHHHcCCCC
Confidence 46777766 2233333333332 3589998887641 2234677888888888877 6
Q ss_pred ceEEEEcCCCC
Q 025181 116 TRIIFLSTPPV 126 (256)
Q Consensus 116 ~~vi~~~~~p~ 126 (256)
..|++-+.++.
T Consensus 82 ~~i~vGG~~~~ 92 (119)
T cd02067 82 IPVLVGGAIVT 92 (119)
T ss_pred CeEEEECCCCC
Confidence 77777766553
No 73
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=55.21 E-value=55 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCeEEechhHhhc
Q 025181 151 KYSDACINLCHELGVKVVDLFTAIQK 176 (256)
Q Consensus 151 ~~n~~l~~~~~~~~v~~vD~~~~~~~ 176 (256)
++.+.+++.|++++++++|+..++..
T Consensus 64 ~lr~~l~~~~~~~~i~~~Dll~~~l~ 89 (255)
T PF03618_consen 64 ELREYLEEFCREHGIPCVDLLGPLLS 89 (255)
T ss_pred HHHHHHHHHHHhcCCCEEeccHHHHH
Confidence 45566778899999999999998654
No 74
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=54.73 E-value=93 Score=23.66 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 025181 155 ACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQAEWKPSLHWKSMPT 223 (256)
Q Consensus 155 ~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~~~~~~~~~~~p~ 223 (256)
..+++++.+++.||....- +|.. -++...++|+.|...|++.+..-.-.|.++-.
T Consensus 138 EaEklAa~hgM~FVETSak-------------~g~N-VeEAF~mlaqeIf~~i~qGeik~edgw~gvKS 192 (213)
T KOG0091|consen 138 EAEKLAASHGMAFVETSAK-------------NGCN-VEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKS 192 (213)
T ss_pred HHHHHHHhcCceEEEeccc-------------CCCc-HHHHHHHHHHHHHHHHhcCceeeeeccccccc
Confidence 3447788999999987432 2211 14678899999999999865555555555444
No 75
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=54.68 E-value=42 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+..|...- ++. ..+.+..| ++++++.+++.+|++.+++++.|-
T Consensus 72 ~~adivIitag~~~k---------~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~ 125 (315)
T PRK00066 72 KDADLVVITAGAPQK---------PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV 125 (315)
T ss_pred CCCCEEEEecCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH
Confidence 356999999987542 122 23444444 667788888888999988888653
No 76
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=54.39 E-value=53 Score=23.57 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=37.7
Q ss_pred EEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 9 FVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
|+.+||-+..++...+.-...+++.+.. ..++............+.+.+.+.. ...|+|+...|+=
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-----~~~dliittGG~g 68 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-----ERADLVITTGGTG 68 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-----hCCCEEEEcCCCC
Confidence 6789999887532223333344444432 2344444444566666666666654 2479888886643
No 77
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=54.24 E-value=39 Score=28.20 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++..|....- .....+.+..| ++++.+.+++.+|+..+++++.|-
T Consensus 65 ~~aDiVIitag~p~~~--------~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~ 118 (300)
T cd00300 65 ADADIVVITAGAPRKP--------GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118 (300)
T ss_pred CCCCEEEEcCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH
Confidence 3569999999875321 11223444444 667788888888999999888653
No 78
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=54.09 E-value=13 Score=27.07 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=41.7
Q ss_pred EEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 9 FVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
|+.+||.+..|.- .+.-...+.+.+. ..+++...++..+....+.+.+.+.+ .+.|+|+...|+
T Consensus 2 Ii~~GdEl~~g~~-~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-----~~~D~VittGG~ 66 (144)
T PF00994_consen 2 IISTGDELLSGQI-RDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRAL-----DRADLVITTGGT 66 (144)
T ss_dssp EEEECHHHHTTSS-EBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHH-----HTTSEEEEESSS
T ss_pred EEEECccCcCCce-EEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhh-----ccCCEEEEcCCc
Confidence 7899999996332 2223334444443 23566777778888888888776665 234999988875
No 79
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=52.86 E-value=18 Score=28.52 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCeEE--echhHhhcccccccccccccccCChh
Q 025181 150 QKYSDACINLCHELGVKVV--DLFTAIQKRDDWKNACFTDGIHLSEE 194 (256)
Q Consensus 150 ~~~n~~l~~~~~~~~v~~v--D~~~~~~~~~~~~~~~~~Dg~Hp~~~ 194 (256)
.+....++.+|++++++++ |-.+.-... -.||+|..+.
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~dlA~~~-------~AdGVHlGq~ 90 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRVDLALAV-------GADGVHLGQD 90 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcHHHHHhC-------CCCEEEcCCc
Confidence 5667788899999999877 222222221 2699998877
No 80
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=52.69 E-value=50 Score=26.96 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=46.2
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-|+.+||=+..|.- .+.=.+.|++.+. ..+++.-...-|+.-..+.+.+.... .++|+||+..|.
T Consensus 5 ~iI~vG~ElL~G~i-vdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~-----~r~D~vI~tGGL 70 (255)
T COG1058 5 EIIAVGDELLSGRI-VDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREAS-----ERADVVITTGGL 70 (255)
T ss_pred EEEEEccceecCce-ecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHH-----hCCCEEEECCCc
Confidence 58999999987443 2233334554443 35777778888999888888888776 348999999886
No 81
>PLN00135 malate dehydrogenase
Probab=52.40 E-value=49 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhh-cCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSL-SCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~-~~~~~vi~~~~~ 124 (256)
...|+|||..|...- ++. ..+.+..| ++.+...+.+. .|++.+++++.|
T Consensus 57 ~daDiVVitAG~~~k---------~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNP 110 (309)
T PLN00135 57 KGVNIAVMVGGFPRK---------EGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANP 110 (309)
T ss_pred CCCCEEEEeCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 467999999998643 222 23334433 66777888885 799999998855
No 82
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=51.98 E-value=35 Score=25.87 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=40.7
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||-+..|-- .+.-...|++.+.. .+++....+.+.....+...+.+.. ...|+|++..|+
T Consensus 3 ~Ii~~GdEl~~G~i-~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-----~~~dlVIttGG~ 68 (170)
T cd00885 3 EIIAIGDELLSGQI-VDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-----ERADLVITTGGL 68 (170)
T ss_pred EEEEECccccCCeE-EEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-----hCCCEEEECCCC
Confidence 58899999886332 23333344444432 3556656677777777777777664 257998888664
No 83
>PRK08006 replicative DNA helicase; Provisional
Probab=51.96 E-value=51 Score=29.58 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=33.8
Q ss_pred hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 112 LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 112 ~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..++..+|++.+.-+-..... .......+....+.++.+|++++|++|=+.+.
T Consensus 333 ~~~~~~lvvIDYLqli~~~~~---------~~~r~~ei~~isr~LK~lAkel~ipVi~LsQL 385 (471)
T PRK08006 333 EHGGLSLIMIDYLQLMRVPSL---------SDNRTLEIAEISRSLKALAKELQVPVVALSQL 385 (471)
T ss_pred hcCCCCEEEEccHHHccCCCC---------CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 335678888877543211100 00122457888999999999999999966544
No 84
>PRK03670 competence damage-inducible protein A; Provisional
Probab=51.25 E-value=45 Score=27.16 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=41.3
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
-|+.+||-+..|-- .+.=...|++.+. ..+++....+-++....+...+.+.+ ....|+||+..|+
T Consensus 4 ~Ii~iGdEll~G~i-~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~----~~~~DlVIttGGl 70 (252)
T PRK03670 4 EIITVGDELLTGNT-VDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEIL----SRKPEVLVISGGL 70 (252)
T ss_pred EEEEeCCcCcCCeE-EehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHh----hCCCCEEEECCCc
Confidence 48899999875332 2222333444333 24666666777777777777776654 2346999988664
No 85
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=51.06 E-value=64 Score=28.81 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=37.0
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 025181 65 APIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVD 127 (256)
Q Consensus 65 ~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~ 127 (256)
...+|.+|+++==..=+ ..-....+.+.++++++.+|++ ++-|++++..|..
T Consensus 251 D~dkPklVfFfDEAHLL---------F~da~kall~~ieqvvrLIRSK--GVGv~fvTQ~P~D 302 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLL---------FNDAPKALLDKIEQVVRLIRSK--GVGVYFVTQNPTD 302 (502)
T ss_pred CCCCceEEEEEechhhh---------hcCCCHHHHHHHHHHHHHhhcc--CceEEEEeCCCCC
Confidence 45689998876222111 1123688999999999999995 5889999888753
No 86
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=50.09 E-value=54 Score=23.96 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=41.0
Q ss_pred eEEEEccccccc------ccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQL------SFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g------~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||-+..- +-..+.-...|++.+. ..+++...++.+.....+.+.+.+.. .+.|+||+..|+
T Consensus 4 ~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-----~~~DliIttGG~ 76 (144)
T TIGR00177 4 AVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-----DEADVVLTTGGT 76 (144)
T ss_pred EEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-----hCCCEEEECCCC
Confidence 578889998851 1111222333444333 23666777788888777777776654 368999998764
No 87
>PRK05086 malate dehydrogenase; Provisional
Probab=49.96 E-value=54 Score=27.62 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=33.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..|+||++.|..-- ......+.+.. -++.+++.+++.+++..|++++.|-
T Consensus 69 ~~DiVIitaG~~~~--------~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 GADVVLISAGVARK--------PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCEEEEcCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 47999999997421 01223455555 5778888888887887776666654
No 88
>PRK08840 replicative DNA helicase; Provisional
Probab=49.39 E-value=64 Score=28.93 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 114 CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 114 ~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
++..+|++.+.-.-..... ...-...+....+.++.+|++++|++|=+.+.
T Consensus 328 ~~~~lvvIDYLql~~~~~~---------~~~r~~ei~~isr~LK~lAkel~ipVi~LsQL 378 (464)
T PRK08840 328 GGLSMIMVDYLQLMRVPAL---------SDNRTLEIAEISRSLKALAKELNVPVVALSQL 378 (464)
T ss_pred CCCCEEEEccHHhcCCCCC---------CCchHHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 4577888876543211000 01123457888999999999999999976654
No 89
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=49.37 E-value=77 Score=22.84 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=46.4
Q ss_pred ecCCCCCchHHHHHHhhhh-CCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEE
Q 025181 42 LRGYYGWNSRRALQVLDQV-FPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRII 119 (256)
Q Consensus 42 n~g~~G~~s~~~~~~~~~~-~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi 119 (256)
-.|-+|.+-..+...+.+. +.. ..+.+.|-..++++|.-. ....+.|.+.+...|...-+..|...+|
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~--G~~S~~V~~f~~~~hFP~--------~~~v~~Yk~~L~~~I~~~v~~C~rslFI 126 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKS--GMKSPFVHQFIATHHFPH--------NSNVDEYKEQLKSWIRGNVSRCPRSLFI 126 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhc--ccCCCceeeecccccCCC--------chHHHHHHHHHHHHHHHHHHhCCcCeee
Confidence 4566676655555555443 332 357799999999999843 3347889999998888776666654444
No 90
>PRK08506 replicative DNA helicase; Provisional
Probab=49.34 E-value=70 Score=28.74 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=32.6
Q ss_pred cCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 113 SCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 113 ~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
.++..+|++...-.-.... ........+....+.++.+|++++|++|=+.+.
T Consensus 300 ~~~~~lvvIDyLql~~~~~---------~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQL 351 (472)
T PRK08506 300 HPEIGLAVIDYLQLMSGSG---------NFKDRHLQISEISRGLKLLARELDIPIIALSQL 351 (472)
T ss_pred CCCCCEEEEcChhhccCCC---------CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 3567888887764321100 000123446778889999999999999866543
No 91
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.01 E-value=61 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC---hhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP---LPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~---~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|||..|..-- ++.+ .+.+..| +++++..+.+.+|+..+++++.|
T Consensus 67 ~~aDivvitaG~~~k---------pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 67 ADADIIVITAGPSID---------PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCEEEECCCCCCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 356899998886321 2222 4555555 66778888888899888888776
No 92
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=48.06 E-value=21 Score=28.37 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhH
Q 025181 147 ELCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
....+..+.++++|+++++.++ +-+-.+... +-.||+|+++.-
T Consensus 54 ~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~------~~adGVHLg~~d 97 (221)
T PRK06512 54 ATFQKQAEKLVPVIQEAGAAALIAGDSRIAGR------VKADGLHIEGNL 97 (221)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHH------hCCCEEEECccc
Confidence 3455667778899999998876 222112111 126999999653
No 93
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=47.97 E-value=59 Score=27.28 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|+|..|+..-. .....+.+..| ++.+++.+.+..|+..|++++.|-
T Consensus 68 ~~aDiVIitag~p~~~--------~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~ 121 (305)
T TIGR01763 68 ANSDIVVITAGLPRKP--------GMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL 121 (305)
T ss_pred CCCCEEEEcCCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 3569999999975421 11223333333 556667777777888888887763
No 94
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=47.09 E-value=55 Score=27.36 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+..|..-- + .....+.+..| ++++.+.+++.+|+..+++++.|-
T Consensus 63 ~daDivVitag~~rk--~------g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 116 (299)
T TIGR01771 63 KDADLVVITAGAPQK--P------GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116 (299)
T ss_pred CCCCEEEECCCCCCC--C------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 356999999886321 1 11223444444 667777888888999999988663
No 95
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=46.67 E-value=1.5e+02 Score=23.56 Aligned_cols=44 Identities=2% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|++++.+-..|. +.+..-.......++...+++++++++.-
T Consensus 71 ~~~d~illvfdis~~--------------~Sf~~i~~~w~~~~~~~~~~~piiLVgnK 114 (222)
T cd04173 71 PDSDAVLICFDISRP--------------ETLDSVLKKWQGETQEFCPNAKVVLVGCK 114 (222)
T ss_pred cCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 467999999987663 44444444555556666688888888753
No 96
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=46.49 E-value=70 Score=26.99 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+..|..-- + .....+.+..| ++.+...+.+..|++.+++++.|-
T Consensus 66 ~daDivvitaG~~~~--~------g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 66 KGADVVVIPAGVPRK--P------GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred CCCCEEEEeCCCCCC--C------CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 456999999996321 1 11223444443 667777778888999988887775
No 97
>PRK08999 hypothetical protein; Provisional
Probab=46.36 E-value=1.2e+02 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhHH
Q 025181 145 TNELCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEGS 196 (256)
Q Consensus 145 ~~~~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G~ 196 (256)
......+.-+.++++|+++++.++ +-+..+... +-.||+|.++.-.
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~------~~~~GvHl~~~d~ 215 (312)
T PRK08999 169 PPAAYRALARAALGLCRRAGAQLLLNGDPELAED------LGADGVHLTSAQL 215 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHh------cCCCEEEcChhhc
Confidence 344566777778889999888764 333222221 1269999997553
No 98
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=46.25 E-value=46 Score=22.29 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||++++-+...+. +..++++.+++..+..++++++...
T Consensus 42 ~~~d~iiid~~~~~~-------------------~~~~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 42 HPPDLIIIDLELPDG-------------------DGLELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp STESEEEEESSSSSS-------------------BHHHHHHHHHHHTTTSEEEEEESST
T ss_pred cCceEEEEEeeeccc-------------------cccccccccccccccccEEEecCCC
Confidence 469999999876663 2345666667776889999998554
No 99
>PRK06904 replicative DNA helicase; Validated
Probab=46.19 E-value=75 Score=28.56 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+.+..+.++.+|+++++++|=+.+.
T Consensus 357 ~ei~~isr~LK~lAkel~ipVi~lsQL 383 (472)
T PRK06904 357 LEIAEISRSLKALAKELKVPVVALSQL 383 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 346788899999999999999966544
No 100
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.62 E-value=76 Score=26.87 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCC-CChhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPH-VPLPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~-~~~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+|||..|...- ++ ...+.+..| ++.+...+.+.. |+..+++++.|
T Consensus 77 ~daDivvitaG~~~k---------~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 77 KDADWALLVGAKPRG---------PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred CCCCEEEEeCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 456999999987532 22 223334443 677788888888 48888888755
No 101
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.17 E-value=60 Score=27.35 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=33.4
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..|+||+..|..-- ++. ..+.+..| ++++.+.+++..|+..+++++.|-
T Consensus 71 ~adivvitaG~~~k---------~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 123 (312)
T cd05293 71 NSKVVIVTAGARQN---------EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV 123 (312)
T ss_pred CCCEEEECCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH
Confidence 56899998886532 122 23444444 667778888888999998888664
No 102
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.02 E-value=71 Score=26.90 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+..|..=- + .....+.+..| +..+.+.+.+.+|++.+++++.|-
T Consensus 67 ~daDivvitaG~~~k--~------g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 67 KGADVVVIPAGVPRK--P------GMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred CCCCEEEEeCCCCCC--C------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 456999999996311 1 12234444444 667777778888999888887774
No 103
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=44.35 E-value=72 Score=26.65 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.2
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+||+..|...- + .....+.+..| +.++.+.+++.+|++.|++++.|
T Consensus 67 ~~aDIVIitag~~~~--~------g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 67 KDADIVVITAGAPQK--P------GETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred CCCCEEEEccCCCCC--C------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 356999999986432 0 11223444444 66777888888899988888755
No 104
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=44.02 E-value=79 Score=26.80 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=32.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHHH---HHHHHHHHHhhcC-CceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVEN---MRRIATHLKSLSC-ATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~~---l~~li~~i~~~~~-~~~vi~~~~~ 124 (256)
...|+|||..|...- ++.+ .+.+..| ++.++..+.+..| ++.+++++.|
T Consensus 78 ~daDvVVitAG~~~k---------~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 78 KDVDAALLVGAFPRK---------PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCCCEEEEeCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 456999999996431 2222 3333333 6777788888887 8888888754
No 105
>PRK01215 competence damage-inducible protein A; Provisional
Probab=43.91 E-value=74 Score=26.11 Aligned_cols=69 Identities=4% Similarity=-0.073 Sum_probs=43.6
Q ss_pred CCCceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 4 PARPQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 4 p~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
+++-.|+.+||-+..|.- .+.-...+++.+. ..+++......++....+...+.+... ..|+||+..|+
T Consensus 3 ~~~v~Ii~~GdEll~G~i-~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-----~~DlVIttGG~ 72 (264)
T PRK01215 3 KWFAWIITIGNELLIGRT-VNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-----RADVVVSTGGL 72 (264)
T ss_pred CCEEEEEEEChhccCCeE-EEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-----CCCEEEEeCCC
Confidence 344568889999886332 2222334444443 235666667778888777777777652 45999998665
No 106
>PRK07004 replicative DNA helicase; Provisional
Probab=43.13 E-value=98 Score=27.72 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|++++|++|=+.+.
T Consensus 347 ~ei~~Isr~LK~lAkel~ipVi~lsQL 373 (460)
T PRK07004 347 TEISEISRSLKSLAKELDVPVIALSQL 373 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 457788999999999999999966543
No 107
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=42.73 E-value=1.1e+02 Score=26.84 Aligned_cols=59 Identities=25% Similarity=0.205 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 105 IATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 105 li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
.++.++...++..+|++...-.-... .. . .....+....+.++.+|+++++++|=+.+.
T Consensus 295 ~~r~~~~~~~~~~lvvIDyLql~~~~--~~-----~---~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQl 353 (421)
T TIGR03600 295 IARRIKRKKGGLDLIVVDYIQLMAPT--RG-----R---DRNEELGGISRGLKALAKELDVPVVLLAQL 353 (421)
T ss_pred HHHHHHHhcCCCCEEEEecccccCCC--CC-----C---CHHHHHHHHHHHHHHHHHHhCCcEEEeccc
Confidence 33333333346788888765432110 00 0 123456778889999999999999977654
No 108
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=42.62 E-value=1.2e+02 Score=23.90 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 115 ATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 115 ~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
++.+|++.....-.... ........+..+.+.++.+|+++++++|=+...
T Consensus 123 ~~~~vvID~l~~l~~~~---------~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~ 172 (242)
T cd00984 123 GLGLIVIDYLQLMSGSK---------KKGNRQQEVAEISRSLKLLAKELNVPVIALSQL 172 (242)
T ss_pred CCCEEEEcCchhcCCCC---------CCCCHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 67888987654211110 000223446778888999999999998877654
No 109
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.41 E-value=57 Score=24.95 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=30.3
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEec
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVG 77 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G 77 (256)
..+|+++|.+=.. .......|.+.++ .+++.. ..|.-+..-...+.+.+ ...+||+|++.+|
T Consensus 48 ~~~vfllG~~~~v----~~~~~~~l~~~yP-~l~i~g--~~g~f~~~~~~~i~~~I---~~s~~dil~VglG 109 (177)
T TIGR00696 48 KLPIFLYGGKPDV----LQQLKVKLIKEYP-KLKIVG--AFGPLEPEERKAALAKI---ARSGAGIVFVGLG 109 (177)
T ss_pred CCeEEEECCCHHH----HHHHHHHHHHHCC-CCEEEE--ECCCCChHHHHHHHHHH---HHcCCCEEEEEcC
Confidence 3477777766221 0122334444443 233333 24443322222222333 2568999999998
No 110
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=42.24 E-value=1.6e+02 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
.||+|++-+...|. + .++.+.+.++...|+.+|++++...-
T Consensus 52 ~~DvvllDi~~p~~--------------~----G~~~~~~~i~~~~p~~~vvvlt~~~~ 92 (216)
T PRK10100 52 SGSIILLDMMEADK--------------K----LIHYWQDTLSRKNNNIKILLLNTPED 92 (216)
T ss_pred CCCEEEEECCCCCc--------------c----HHHHHHHHHHHhCCCCcEEEEECCch
Confidence 38999998876653 1 22333345566678999999988753
No 111
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=41.89 E-value=77 Score=23.79 Aligned_cols=67 Identities=7% Similarity=0.014 Sum_probs=40.0
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
+--|+.+||++.. .. +.-...++..+.+ ..++...++-.+....+...+.+.+. ....|+|++..|+
T Consensus 6 rv~vit~~d~~~~-~~--d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVIttGGt 73 (163)
T TIGR02667 6 RIAILTVSDTRTE-ED--DTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIA---DPDVQVILITGGT 73 (163)
T ss_pred EEEEEEEeCcCCc-cC--CCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCc
Confidence 3347789999764 22 2222234443332 35566666777777777777766542 2468999988664
No 112
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=41.72 E-value=1.5e+02 Score=22.42 Aligned_cols=44 Identities=5% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|.+++.+...|. +.+..-+...+..+++..++..+++++.-
T Consensus 75 ~~ad~~ilvyDit~~--------------~Sf~~~~~~w~~~i~~~~~~~piilVgNK 118 (182)
T cd04172 75 PDSDAVLICFDISRP--------------ETLDSVLKKWKGEIQEFCPNTKMLLVGCK 118 (182)
T ss_pred CCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHHHCCCCCEEEEeEC
Confidence 456899998876653 44444346677777776678888888653
No 113
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=41.48 E-value=1.1e+02 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|+|..|..= .++. +.+-+..| ++.+.+.+.+..|+..+++++.|-
T Consensus 68 ~~aDiVvitAG~pr---------KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 68 KGADIVVITAGVPR---------KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred cCCCEEEEeCCCCC---------CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 35688888887543 2333 33444444 566777777878888888887763
No 114
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=41.11 E-value=1e+02 Score=21.21 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..+||+|.++.-. ......+.++++.+++..|+..+++-++.+
T Consensus 49 ~~~pd~V~iS~~~-----------------~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 49 AERPDVVGISVSM-----------------TPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HTTCSEEEEEESS-----------------STHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred cCCCcEEEEEccC-----------------cCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 3589998887631 112345677888889988999998888765
No 115
>PRK05748 replicative DNA helicase; Provisional
Probab=41.06 E-value=1.2e+02 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 114 CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 114 ~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
++..+|++.+.-.-...... .......+....+.++.+|+++++++|=+.+.
T Consensus 313 ~~~~~vvIDyL~li~~~~~~--------~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQl 364 (448)
T PRK05748 313 GGLGLILIDYLQLIQGSGRS--------GENRQQEVSEISRSLKALAKELKVPVIALSQL 364 (448)
T ss_pred CCCCEEEEccchhcCCCCCC--------CcCHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 46888888876532111100 00122456788899999999999999976654
No 116
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=40.87 E-value=79 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
...||+|+.++| +.-....-+.+..+|+..|..+|=++....+
T Consensus 32 g~ePDVVlA~aG------------------d~pT~E~lAA~~lLr~~~P~lkiRvVNVvDL 74 (203)
T PF09363_consen 32 GEEPDVVLACAG------------------DVPTLEVLAAASLLREHFPELKIRVVNVVDL 74 (203)
T ss_dssp TTT-SEEEEEES------------------HHHHHHHHHHHHHHHHT--T--EEEEEESBG
T ss_pred CCCCCEEEEecC------------------chhhHHHHHHHHHHHHhccCceEEEEEEeEc
Confidence 468999999999 3334445566788888889998888877654
No 117
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=40.50 E-value=1e+02 Score=25.82 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhc
Q 025181 98 YVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQK 176 (256)
Q Consensus 98 ~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~ 176 (256)
...-++.++...+..+++..|++++.+..+.+... +.++++.+++|+|+...+..
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg------------------------~~La~~Lg~~~id~D~~i~~ 170 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLG------------------------RMLAARLGVPFVELNREIER 170 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHH------------------------HHHHHHcCCCEEeHHHHHHH
Confidence 33445555666677778999999988876543221 24456668888887766543
No 118
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=40.35 E-value=1.3e+02 Score=23.99 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=41.5
Q ss_pred hHHHHHHhhhhCCCCCCCCCcEEEEEe-----c-cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 50 SRRALQVLDQVFPKDAPIQPSLVIVYV-----G-GNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 50 s~~~~~~~~~~~~~~~~~~pd~vii~~-----G-~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
+....+.++++. ..-|++||.. | +||+......-...-.+...-.+.+.++.+.+++..++ .+|++..
T Consensus 102 ~~~~f~klK~iW-----~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~~-~LiLiaL 175 (225)
T PF08759_consen 102 SARYFEKLKQIW-----KDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAKD-KLILIAL 175 (225)
T ss_pred HHHHHHHHHHHh-----CCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCCC-cEEEEec
Confidence 444555566665 3558888872 2 27876543322223334566677889999999887655 4444444
Q ss_pred CC
Q 025181 124 PP 125 (256)
Q Consensus 124 ~p 125 (256)
-|
T Consensus 176 GP 177 (225)
T PF08759_consen 176 GP 177 (225)
T ss_pred CC
Confidence 44
No 119
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=39.55 E-value=45 Score=26.29 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhH
Q 025181 148 LCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 148 ~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
....+...+.++|+++++.++ +-+-.+... +-.||+|+++.-
T Consensus 47 ~~~~la~~l~~~~~~~~~~liInd~~~lA~~------~~adGVHlg~~d 89 (211)
T PRK03512 47 EVEADVVAAIALGRRYQARLFINDYWRLAIK------HQAYGVHLGQED 89 (211)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeCHHHHHHH------cCCCEEEcChHh
Confidence 345566667788888887655 222212211 126999998754
No 120
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=39.54 E-value=2.1e+02 Score=24.01 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhh--hhHHHHHHHHHHHHHHHHHhC-CeEE
Q 025181 92 HVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELV--RTNELCQKYSDACINLCHELG-VKVV 168 (256)
Q Consensus 92 ~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~n~~l~~~~~~~~-v~~v 168 (256)
..+.+.|++.+..+-..+++. ++.+++++--|.--.... .. .....|.. ....+.+.+..+++.+....+ ..||
T Consensus 85 ~~~~~~Yk~wId~ia~~i~~~-g~~~~vvIlEPDaL~~lv-tn-~~~~~C~~~~~~~~r~~~l~yAv~~L~~~~na~vYl 161 (298)
T PF01341_consen 85 ADSLASYKEWIDPIAAGIKKY-GDRRAVVILEPDALANLV-TN-MSTPACGNAAQQAERLELLAYAVDKLSALPNAWVYL 161 (298)
T ss_dssp GTHHHHHHHHHHHHHHHHHHT-TTSEEEEEE-TTCHHHHH-H--TTSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCchhHHHHHHHHHHHHHHhc-CCCceEEEECcchhhhhh-cc-cCcccccchhccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 346788888888888888555 667776665554211100 00 00011111 123444555555666633323 5688
Q ss_pred echhH
Q 025181 169 DLFTA 173 (256)
Q Consensus 169 D~~~~ 173 (256)
|.-..
T Consensus 162 DaG~~ 166 (298)
T PF01341_consen 162 DAGHS 166 (298)
T ss_dssp E---H
T ss_pred eccch
Confidence 87553
No 121
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=39.43 E-value=1.2e+02 Score=23.57 Aligned_cols=67 Identities=13% Similarity=-0.001 Sum_probs=37.5
Q ss_pred ceEEEEcccccccccCCCChHHHHHHHhhcc----ccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 7 PQFVLFGSSIVQLSFSNGGWGAILSDIYARK----ADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 7 ~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~----~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
--|+.+||+++.|... +.-...+.+.+... ..+ ..++-...-..+...+.+.+. ....|+|+...|+
T Consensus 6 ~aIItvSd~~~~G~i~-D~ng~~L~~~L~~~G~~g~~v-~~~iVpDd~~~I~~aL~~a~~---~~~~DlIITTGGt 76 (193)
T PRK09417 6 IGLVSISDRASSGVYE-DKGIPALEEWLASALTSPFEI-ETRLIPDEQDLIEQTLIELVD---EMGCDLVLTTGGT 76 (193)
T ss_pred EEEEEEcCcCCCCcee-echHHHHHHHHHHcCCCCceE-EEEECCCCHHHHHHHHHHHhh---cCCCCEEEECCCC
Confidence 3588899998864332 22233344433321 112 235556666666666666542 2467999988664
No 122
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.32 E-value=1e+02 Score=26.19 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+||+..|...- ++.+ .+.+..| ++++...+.+.. |+..+++++.|
T Consensus 75 ~~aDiVVitAG~~~~---------~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 75 KDVDVAILVGAFPRK---------PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred CCCCEEEEeCCCCCC---------cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 356999999986432 2223 3333333 677788888884 89998888755
No 123
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=39.03 E-value=1.3e+02 Score=25.08 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=40.1
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc-CCCC
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG-NDSM 82 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~-ND~~ 82 (256)
...++++.||--+. +- ..|.+.... +.+|...+.=|..+..-...+++ .+|.+.+|+.|- |...
T Consensus 181 g~~s~LlTGD~e~~------~E-~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~-------v~Pk~AliS~G~~N~yg 246 (293)
T COG2333 181 GGNSFLLTGDLEEK------GE-KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEA-------VKPKVALISSGRNNRYG 246 (293)
T ss_pred CCeeEEEecCCCch------hH-HHHHhhCCCccceEEEeccCCccccCcHHHHHh-------cCCcEEEEEeeccCCCC
Confidence 45577888887665 22 334443332 45577666666655444444443 489999999999 5554
Q ss_pred CC
Q 025181 83 GP 84 (256)
Q Consensus 83 ~~ 84 (256)
+|
T Consensus 247 hP 248 (293)
T COG2333 247 HP 248 (293)
T ss_pred CC
Confidence 43
No 124
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=38.95 E-value=1.1e+02 Score=21.93 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=38.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||-+..|.- .+.-...+.+.+.+ ..++...+.-......+.+.+.+.+. ..|+|+...|+
T Consensus 3 ~ii~~G~El~~g~i-~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~-----~~DlvittGG~ 68 (133)
T cd00758 3 AIVTVSDELSQGQI-EDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR-----EADLVLTTGGT 68 (133)
T ss_pred EEEEeCccccCCce-EEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh-----cCCEEEECCCC
Confidence 47889998876322 22223334443332 24555566667777777777766652 37988888664
No 125
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=38.76 E-value=15 Score=18.23 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=7.2
Q ss_pred ccCCCCccc
Q 025181 241 TLNPSDWTF 249 (256)
Q Consensus 241 ~~~~~~~~~ 249 (256)
+.+|+||.+
T Consensus 9 ~~fP~D~S~ 17 (28)
T PF08076_consen 9 HHFPSDKSI 17 (28)
T ss_pred ccCCCccce
Confidence 378999976
No 126
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=38.50 E-value=53 Score=30.60 Aligned_cols=106 Identities=7% Similarity=0.044 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHhh-----cCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKSL-----SCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~-----~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+.++ -|++.||+..|.-+.-+-.+.......+. -..+-.+.....++++|++++++++.-
T Consensus 494 P~iK~r~R~~~re~~~~~m~~~V~~AdvVitNPTH~AVAL~Y~~~~~~aP~--VvAKG~d~~A~~Ir~~A~e~~VPive~ 571 (609)
T PRK12772 494 PQIKAKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPK--VVAKGADYVALKIKEIAKENDVPIIEN 571 (609)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEeeCcHHHHHHHHHHHHCCCcEEeC
Confidence 44555555555544322 38999999988754333222211111111 112224566778899999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
-..-.. -|......+- =.++=|+.+|+.+.-..
T Consensus 572 ~~LAR~--Ly~~~evg~~--IP~ely~aVA~iL~~v~ 604 (609)
T PRK12772 572 KPLARL--IYKKVEIDQE--IPQDMYQAVAEILAIVY 604 (609)
T ss_pred HHHHHH--HHHcCCCCCC--CCHHHHHHHHHHHHHHH
Confidence 543111 0000000111 24566778887776443
No 127
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=37.97 E-value=74 Score=25.86 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=34.2
Q ss_pred CCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 114 CATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 114 ~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
|+++|++++.|............+..+......-..-..|+++.+++.+.++++=|.-..
T Consensus 122 ~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNv 181 (332)
T KOG1496|consen 122 PNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNV 181 (332)
T ss_pred CCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhhHHHHHHHhhCCchhhccee
Confidence 899999999987544332222122111111111112346888899999988776655443
No 128
>PTZ00063 histone deacetylase; Provisional
Probab=37.78 E-value=3e+02 Score=24.58 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccCC
Q 025181 190 HLSEEGSKIVVAEILKVLKQAEWKPSLHWKSMPTEFSEDS 229 (256)
Q Consensus 190 Hp~~~G~~~ia~~l~~~l~~~~~~~~~~~~~~p~~~~~~~ 229 (256)
+-+++--+.+.+.+...|+....+|.+.-..+|.++...+
T Consensus 352 ~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~ 391 (436)
T PTZ00063 352 YNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRD 391 (436)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCccccccc
Confidence 4567777888889999999887899999999998774433
No 129
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=37.18 E-value=57 Score=28.12 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHH-----hhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLK-----SLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~-----~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+. +.-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|+++||++|..
T Consensus 240 P~iK~r~Rq~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~Yd~~~~~aP~--VvAKG~d~~A~~Ir~~A~e~~VPiven 317 (358)
T PRK13109 240 PSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPL--VVAKGQDLIALKIREIAEENGIPVIED 317 (358)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEEeCcHHHHHHHHHHHHcCCCEEeC
Confidence 445555555555443 2238999999988754333222211111111 111223566778899999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
-..-.. -|......|-+ .++=|+.+|+.+.-..
T Consensus 318 ~pLARa--Ly~~~evg~~I--P~ely~AVA~ILa~v~ 350 (358)
T PRK13109 318 KPLARS--LYDAVQVDQVI--PAEFYRPVAQILYFLF 350 (358)
T ss_pred HHHHHH--HHHhCCCCCcC--CHHHHHHHHHHHHHHH
Confidence 443111 00000001111 3466777777765443
No 130
>PHA02542 41 41 helicase; Provisional
Probab=37.07 E-value=1.3e+02 Score=27.03 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcC-CceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 101 NMRRIATHLKSLSC-ATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 101 ~l~~li~~i~~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
.+...++.++...+ +..+|++.++.+-........ .......+....+.++.+|++++|++|=+.+.
T Consensus 286 ~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~------~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 286 HFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVS------SENSYTYVKAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCC------CCChHHHHHHHHHHHHHHHHHhCCeEEEEEee
Confidence 34444554443322 367888888775421110000 01223557889999999999999999866544
No 131
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=36.55 E-value=1.1e+02 Score=25.91 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCC-ceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCA-TRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~-~~vi~~~~~ 124 (256)
...|+|||..|...- ++. ..+.+..| ++.+...+.+..++ ..|++++.|
T Consensus 59 ~daDiVVitaG~~~k---------~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 59 KDIDCAFLVASVPLK---------PGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred CCCCEEEECCCCCCC---------cCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 467999999997532 222 23334433 66777777777744 667676654
No 132
>PLN02602 lactate dehydrogenase
Probab=36.21 E-value=1.1e+02 Score=26.41 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|||..|..-- + .....+.+..| ++++.+.+.+..|+..+++++.|-
T Consensus 104 ~daDiVVitAG~~~k--~------g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv 157 (350)
T PLN02602 104 AGSDLCIVTAGARQI--P------GESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV 157 (350)
T ss_pred CCCCEEEECCCCCCC--c------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch
Confidence 356999999886321 1 11223444444 667778888888999888888663
No 133
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=36.06 E-value=1e+02 Score=21.72 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=29.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
.+||+|.+++= ...+. ...++++.+|+..|++.|++-++-+.
T Consensus 38 ~~pdiv~~S~~-----------------~~~~~-~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 38 LKPDVVGISLM-----------------TSAIY-EALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred cCCCEEEEeec-----------------cccHH-HHHHHHHHHHHHCCCCEEEECCcchh
Confidence 68999988741 11222 67888888999889888888776553
No 134
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=35.87 E-value=64 Score=27.73 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHh-----hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKS-----LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~-----~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+.+ .-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|+++||++|.-
T Consensus 231 P~iK~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~Yd~~~~~aP~--VvAKG~d~~A~~Ir~iA~e~~VPiven 308 (349)
T PRK12721 231 PEIKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPR--VLEKGKDAQALHIVKLAERNGIPVVEN 308 (349)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcEEEEcCCceEEEEEeCCCCCCCCE--EEEEeCcHHHHHHHHHHHHcCCCEEeC
Confidence 4455555555554422 238999999988654332222211110110 112224556778899999999999966
Q ss_pred hhH---hhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 171 FTA---IQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 171 ~~~---~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
-.. +...... .+ --.++=|+.+|+.+.-..
T Consensus 309 ~pLARaLY~~~~v-----g~--~IP~ely~aVA~ILa~v~ 341 (349)
T PRK12721 309 IPLARALFKEVEC-----GD--YIPETLFEPVAALLRMVM 341 (349)
T ss_pred HHHHHHHHHhCCC-----CC--cCCHHHHHHHHHHHHHHH
Confidence 443 1111100 11 113456777777765443
No 135
>PTZ00325 malate dehydrogenase; Provisional
Probab=35.78 E-value=99 Score=26.20 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|....- .....+.+.. -+..+++.+++..++..|++++.|
T Consensus 75 ~gaDvVVitaG~~~~~--------~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 75 RGADLVLICAGVPRKP--------GMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 3569999999965421 1122344445 477788888888777666665555
No 136
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.70 E-value=23 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=17.8
Q ss_pred CCceEEEEcccccccccCCCChHHHHHHHhhcc
Q 025181 5 ARPQFVLFGSSIVQLSFSNGGWGAILSDIYARK 37 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~ 37 (256)
++.++++|||| |-.+..-|.+ +++.++.+
T Consensus 63 P~~kfiLIGDs---gq~DpeiY~~-ia~~~P~~ 91 (100)
T PF09949_consen 63 PERKFILIGDS---GQHDPEIYAE-IARRFPGR 91 (100)
T ss_pred CCCcEEEEeeC---CCcCHHHHHH-HHHHCCCC
Confidence 67799999999 3333434444 44545543
No 137
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=35.46 E-value=3.6e+02 Score=24.87 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEeccCCCCCCCCC--CCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 65 APIQPSLVIVYVGGNDSMGPHPS--GLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 65 ~~~~pd~vii~~G~ND~~~~~~~--~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...+||.+|+..-.--+...... .......++... .||++.++.++... -..||.+.-.+
T Consensus 319 ~gl~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FG-vPvVVAINKFd 383 (557)
T PRK13505 319 AGLKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFG-VPVVVAINKFV 383 (557)
T ss_pred CCCCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC
Confidence 46788888887522111110000 001222334444 68888888888863 33334444333
No 138
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.44 E-value=1.2e+02 Score=25.88 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCchHHHHHHhhhhC-CCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 47 GWNSRRALQVLDQVF-PKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 47 G~~s~~~~~~~~~~~-~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
|.+...+...++..+ +.....+||+|++..|.. ...... -.....+.+.|..-.+.+.+..+.. ....++++.
T Consensus 217 g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D-~h~~Dp-l~~~~Lt~~~~~~~~~~v~~~a~~~-~~~~~~vle 290 (340)
T COG0123 217 GTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFD-AHRGDP-LGRLNLTEEGYAKIGRAVRKLAEGY-GGPVVAVLE 290 (340)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcc-cCCCCc-cceeecCHHHHHHHHHHHHHHHHhc-CCCeEEEec
Confidence 344444555555422 222367999999999963 322110 0123344555555544444444443 333444443
No 139
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=34.88 E-value=17 Score=22.73 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCeEEechhHhhccc-----cccccccccc-------ccCChhHHHHHHHHHHHHHHh
Q 025181 155 ACINLCHELGVKVVDLFTAIQKRD-----DWKNACFTDG-------IHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 155 ~l~~~~~~~~v~~vD~~~~~~~~~-----~~~~~~~~Dg-------~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
.++-++.+-|-..+|+|..++... .+...|..|+ -|.|..+....+..+...+++
T Consensus 5 ilklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~~~~~~~~~~~~rq 71 (84)
T cd08778 5 ILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLISALRQ 71 (84)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccChHHHHHHHHHHHHH
Confidence 344555566667777776654422 1222333453 488988888888888877765
No 140
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=34.59 E-value=3.2e+02 Score=24.08 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEE
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFL 121 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~ 121 (256)
..+||+++++.-.-|-. ...+.++|.+.++++-+..... .+.+++.+
T Consensus 91 ~lkPdvvffLGDLfDeG--------~~~~~eEf~~~~~RfkkIf~~k-~~~~~~~i 137 (410)
T KOG3662|consen 91 RLKPDVVFFLGDLFDEG--------QWAGDEEFKKRYERFKKIFGRK-GNIKVIYI 137 (410)
T ss_pred ccCCCEEEEeccccccC--------ccCChHHHHHHHHHHHHhhCCC-CCCeeEEe
Confidence 57999999998777742 3455799999999966655544 33444433
No 141
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=34.59 E-value=2.4e+02 Score=24.28 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhH
Q 025181 147 ELCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
.......+.+.++|+++++.++ +-+--+... +-.||+|+.+.-
T Consensus 184 ~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~------~~aDGVHLgq~d 227 (347)
T PRK02615 184 RQRLEEAKKLKELCHRYGALFIVNDRVDIALA------VDADGVHLGQED 227 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeChHHHHHH------cCCCEEEeChhh
Confidence 3455667788899999987766 221112111 126999998653
No 142
>PRK08760 replicative DNA helicase; Provisional
Probab=34.52 E-value=1.4e+02 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+.+..+.++.+|+++++++|=+.+.
T Consensus 362 ~ei~~Isr~LK~lAkel~ipVi~lsQL 388 (476)
T PRK08760 362 TEISEISRSLKGLAKELNVPVIALSQL 388 (476)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeecc
Confidence 346788899999999999999977654
No 143
>PRK05442 malate dehydrogenase; Provisional
Probab=34.36 E-value=1.5e+02 Score=25.22 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+||+..|...- ++.+ .+.+..| ++++...+.+.. |+..+++++.|
T Consensus 79 ~daDiVVitaG~~~k---------~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 79 KDADVALLVGARPRG---------PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred CCCCEEEEeCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 356999999986432 2222 3333333 667777788866 68888888755
No 144
>PRK06298 type III secretion system protein; Validated
Probab=34.20 E-value=69 Score=27.61 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHh-----hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKS-----LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~-----~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+++...+++-+.+.+ .-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|+++||++|.-
T Consensus 232 P~iK~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVALkYd~~~~~AP~--VvAKG~d~~A~~Ir~iA~e~~VPiven 309 (356)
T PRK06298 232 PEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPW--IIAMGINLRAKRIIAEAEKYGVPIMRN 309 (356)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEeeCcHHHHHHHHHHHHcCCCEEeC
Confidence 4455555555544422 238999999888654333222211100110 112224566778899999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
-..-.. -+......+-+ .++=|+.+|+.+.-..+
T Consensus 310 ~pLARa--Ly~~~evg~~I--P~ely~AVA~IL~~v~~ 343 (356)
T PRK06298 310 VPLAHQ--LLDEGKELKFI--PESTYEAIGEILLYITS 343 (356)
T ss_pred HHHHHH--HHHcCCCCCcC--CHHHHHHHHHHHHHHHH
Confidence 543111 00000001112 34667888877765544
No 145
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=33.54 E-value=1.3e+02 Score=23.64 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
..+.|++++++-.++ .+.+...-.+.+-.++...|++++|+++.
T Consensus 74 Y~~tdvfl~cfsv~~--------------p~S~~nv~~kW~pEi~~~cp~vpiiLVGt 117 (198)
T KOG0393|consen 74 YPQTDVFLLCFSVVS--------------PESFENVKSKWIPEIKHHCPNVPIILVGT 117 (198)
T ss_pred CCCCCEEEEEEEcCC--------------hhhHHHHHhhhhHHHHhhCCCCCEEEEee
Confidence 345688888776555 36666666777888888889999999984
No 146
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=33.44 E-value=2.2e+02 Score=21.72 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhCCeEEe-chhHhhcccccccccccccccCChhH
Q 025181 149 CQKYSDACINLCHELGVKVVD-LFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 149 ~~~~n~~l~~~~~~~~v~~vD-~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
..+....+..+|++++++++= -+-.+.. .+-.||+|+++..
T Consensus 42 ~~~~~~~l~~~~~~~~~~l~i~~~~~la~------~~g~~GvHl~~~~ 83 (196)
T TIGR00693 42 RLALAEKLQELCRRYGVPFIVNDRVDLAL------ALGADGVHLGQDD 83 (196)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECHHHHHH------HcCCCEEecCccc
Confidence 445566677888888776552 2111111 1226999998653
No 147
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=33.40 E-value=1.9e+02 Score=23.77 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=39.9
Q ss_pred hHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhc
Q 025181 50 SRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLS 113 (256)
Q Consensus 50 s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~ 113 (256)
+......++++.. -+.+-.+++|.+|+..... .......+++.+.++++++.+++..
T Consensus 154 t~~a~~n~~~I~~-----~~gvd~i~~G~~Dls~slg--~~~~~~~pev~~ai~~v~~a~~~~G 210 (267)
T PRK10128 154 SKTALDNLDEILD-----VEGIDGVFIGPADLSASLG--YPDNAGHPEVQRIIETSIRRIRAAG 210 (267)
T ss_pred CHHHHHhHHHHhC-----CCCCCEEEECHHHHHHHcC--CCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 3445666666552 3678889999999865332 1234456789999999999999863
No 148
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=32.85 E-value=1.2e+02 Score=22.92 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 100 ENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 100 ~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
..++++.+.+++. ++..+|++.+...-... . . ..+....++-+.++++|+++|+.++=+
T Consensus 127 ~~~~~l~~~~~~~-~~~~lvviD~l~~~~~~-~---------~-~~~~~~~~~~~~l~~la~~~~~~vi~v 185 (193)
T PF13481_consen 127 EDLEELEAALKEL-YGPDLVVIDPLQSLHDG-D---------E-NSNSAVAQLMQELKRLAKEYGVAVILV 185 (193)
T ss_dssp HHHHHHHHHHTT-----SEEEEE-GGGG--S-----------T-T-HHHHHHHHHHHHHHHHHH--EEEEE
T ss_pred HHHHHHHHHHhhc-CCCcEEEEcCHHHHhcC-C---------C-CCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3455566655553 34778888765321111 0 0 222334788888999999999876644
No 149
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=32.67 E-value=72 Score=26.67 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=30.6
Q ss_pred EEEeccCCCCCC-----CCC---CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 73 IVYVGGNDSMGP-----HPS---GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 73 ii~~G~ND~~~~-----~~~---~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
++++|+||..+. ..+ ..........+.+-+..+++..++. ++.|-+++-..
T Consensus 200 F~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~--g~~vsvCGe~a 258 (293)
T PF02896_consen 200 FFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKA--GKPVSVCGEMA 258 (293)
T ss_dssp EEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHT--T-EEEEESGGG
T ss_pred EEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhc--CcEEEEecCCC
Confidence 678999998331 111 1112233456777788888877774 58888887443
No 150
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=32.67 E-value=74 Score=27.25 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHhh-----cCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKSL-----SCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~-----~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+.+. -|.+.||+..|.-+.-+..+.......+. -..+-.+.....++++|+++||++|.-
T Consensus 230 P~iK~r~R~~~re~~~~~m~~~V~~AdVVitNPTH~AVAL~Yd~~~~~AP~--VvAKG~d~~A~~Ir~iA~e~~VPiven 307 (342)
T TIGR01404 230 PEIKSKRRELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPL--IICKGTDAQALAVRAYAEEAGIPVVRD 307 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcEEEECCceeEEEeEECCCCCCCCE--EEEeeCcHHHHHHHHHHHHcCCCEeeC
Confidence 44555555555444322 38999999888744322222111100110 112224566778899999999999976
Q ss_pred hhH
Q 025181 171 FTA 173 (256)
Q Consensus 171 ~~~ 173 (256)
-..
T Consensus 308 ~pL 310 (342)
T TIGR01404 308 IPL 310 (342)
T ss_pred HHH
Confidence 544
No 151
>PLN00106 malate dehydrogenase
Probab=32.33 E-value=1.6e+02 Score=24.97 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+..|...- +.. ..+.+..| +..+++.+++..|+..|++++.|-
T Consensus 85 ~~aDiVVitAG~~~~---------~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 85 KGADLVIIPAGVPRK---------PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 457999999986432 111 23334344 667777788888888887777765
No 152
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=32.31 E-value=1.6e+02 Score=22.12 Aligned_cols=44 Identities=5% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|.+++.+...|. +.|...+...+..+++..++..+++++.-
T Consensus 71 ~~a~~~ilvfdit~~--------------~Sf~~~~~~w~~~i~~~~~~~~iilVgnK 114 (178)
T cd04131 71 PDSDAVLICFDISRP--------------ETLDSVLKKWRGEIQEFCPNTKVLLVGCK 114 (178)
T ss_pred CCCCEEEEEEECCCh--------------hhHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 456899999877663 44444446677777776678888888753
No 153
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=32.13 E-value=2.5e+02 Score=22.13 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 101 NMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 101 ~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
.+.+.++.++++ ..+|+|++|.+-
T Consensus 167 ~~~~~l~~l~~r--~~rviwLnP~~~ 190 (222)
T PF05762_consen 167 PLAEELRRLRRR--GRRVIWLNPLPR 190 (222)
T ss_pred HHHHHHHHHHHh--CCEEEEECCccc
Confidence 344455556663 489999998753
No 154
>PRK05636 replicative DNA helicase; Provisional
Probab=31.86 E-value=1.6e+02 Score=26.75 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|++++|++|=+.+.
T Consensus 398 ~ei~~isr~LK~lAkel~ipVi~lsQL 424 (505)
T PRK05636 398 QEVSEFSRQLKLLAKELDVPLIAISQL 424 (505)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 457888999999999999999976554
No 155
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=31.71 E-value=70 Score=23.24 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 146 NELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 146 ~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+..+.+.++++++|++.++.++.+
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~eI~a~ 53 (136)
T COG1943 29 GEVLNLLRSILREVAEQKNFEILAM 53 (136)
T ss_pred HhHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3467889999999999999988766
No 156
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=31.68 E-value=1.6e+02 Score=24.90 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+||+..|...- ... ..+.+..| ++.+...+.+.. |+..+++++.|
T Consensus 74 ~~aDiVVitAG~~~~---------~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 74 TDVDVAILVGAFPRK---------EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred CCCCEEEEcCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 457999999997532 112 23334433 667778888884 88888888755
No 157
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=31.54 E-value=1.1e+02 Score=28.38 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=33.1
Q ss_pred EEEeccCCCCCC-----CCC---CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 73 IVYVGGNDSMGP-----HPS---GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 73 ii~~G~ND~~~~-----~~~---~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
++++|+||+... ..+ +.........+.+.+..+++.+++. ++.+-+++...
T Consensus 447 f~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe~a 505 (565)
T TIGR01417 447 FFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGEMA 505 (565)
T ss_pred EEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCCcC
Confidence 677999999652 111 1123334567788888888888874 57777766543
No 158
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=31.43 E-value=1.5e+02 Score=24.43 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|++++.+|..--.... .....++++..+.+.++.+.+++.+|+..+++-+.|
T Consensus 169 AGaDiiv~H~GlT~gG~~G---a~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGP 223 (268)
T PF09370_consen 169 AGADIIVAHMGLTTGGSIG---AKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGP 223 (268)
T ss_dssp HT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTT
T ss_pred cCCCEEEecCCccCCCCcC---ccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4569999999976443221 234667899999999999999998888766665554
No 159
>PRK08156 type III secretion system protein SpaS; Validated
Probab=31.22 E-value=81 Score=27.24 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHhh-----cCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKSL-----SCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~-----~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+++...+++-+.+.+. -|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|++++|++|..
T Consensus 226 P~iK~r~R~~~re~a~~rm~~~Vp~AdVVItNPTH~AVALkYd~~~~~AP~--VvAKG~d~~A~~IreiA~e~~VPiven 303 (361)
T PRK08156 226 PEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPF--ISVRETNQRALAVRAYAEKVGVPVVRD 303 (361)
T ss_pred HHHHHHHHHHHHHHHHhHHhccCCCCcEEEECCCeEEEEEEecCCCCCCCE--EEEecCcHHHHHHHHHHHHCCCCEeeC
Confidence 44445555555544322 38999999888644322222111100010 112224566778899999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
-..-.. -|.... .|..= .++=|+.+|+.+.-..+-
T Consensus 304 ~pLARa--LY~~ve-vg~~I-P~ely~AVA~iLa~v~~l 338 (361)
T PRK08156 304 IKLARR--LYKTHR-RYSFV-SLEDLDEVLRLLIWLEQV 338 (361)
T ss_pred HHHHHH--HHHhCC-CCCcC-CHHHHHHHHHHHHHHHHH
Confidence 543111 000000 12122 234488888877665553
No 160
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=31.22 E-value=87 Score=27.34 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHh-----hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKS-----LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~-----~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
..++...+++-+.+.+ .-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|++++|++|.-
T Consensus 238 P~iK~r~Rq~~re~a~~~m~~~V~~AdVVItNPTH~AVALkY~~~~~~AP~--VvAKG~d~~A~~Ir~~A~e~~VPiven 315 (386)
T PRK12468 238 PHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPK--VLAKGAGAVALRIRELGAEHRIPLLEA 315 (386)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEEEeCCCCCCCCE--EEEeeCcHHHHHHHHHHHHcCCcEEeC
Confidence 4455555555554432 238999999888654332222211100110 112224566778899999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
-..-.. -|......+ -=.++=|+.+|+.|.-..+-
T Consensus 316 ~pLARa--Ly~~~evg~--~IP~ely~AVA~ILa~V~~l 350 (386)
T PRK12468 316 PPLARA--LFRHSEVGQ--HIPATLYAAVAEVLAWVYQL 350 (386)
T ss_pred HHHHHH--HHHhCCCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 543111 000000012 23567788888887766553
No 161
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=30.92 E-value=1.2e+02 Score=25.25 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=31.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+||+.+|..... .....+... .-++++++.+.+..|+..+++++.|-
T Consensus 65 ~dADiVIit~g~p~~~--------~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~ 118 (300)
T cd01339 65 AGSDVVVITAGIPRKP--------GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL 118 (300)
T ss_pred CCCCEEEEecCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 3569999999864321 111122333 34567777888887888877777653
No 162
>PRK09108 type III secretion system protein HrcU; Validated
Probab=30.40 E-value=86 Score=27.00 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHh-----hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLKS-----LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~-----~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+++...+++-+.+.. .-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|++++|++|.-
T Consensus 233 P~iK~rrRq~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~Y~~~~~~AP~--VvAKG~d~~A~~Ir~~A~e~~VPvven 310 (353)
T PRK09108 233 PHIKGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALRYAPDEHPLPR--VIAKGVDDGALALRRHAHALGIPIVGN 310 (353)
T ss_pred HHHHHHHHHHHHHHHHhHHhccCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEEeCcHHHHHHHHHHHHcCCCEEeC
Confidence 4445555555444432 238999999888654322222211100010 112223566778889999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
-..-.. -| . ..=|---.++=|+.+|+.+.-..+
T Consensus 311 ~pLARa--Ly-~--~~vg~~IP~ely~aVA~iL~~v~~ 343 (353)
T PRK09108 311 PPVARA--LY-R--VELDEPIPEELFETVAAILRWVDE 343 (353)
T ss_pred HHHHHH--Hh-c--CCCCCcCCHHHHHHHHHHHHHHHH
Confidence 543111 01 0 000112245567777777655443
No 163
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=30.34 E-value=2.2e+02 Score=23.89 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCC-hhHHH---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVP-LPEYV---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~-~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|.-.- +..+ .+.+. +.++++.+.+.+..|+..|++++.|
T Consensus 71 ~~aDiViitag~p~~---------~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 71 AGSDIVIITAGVPRK---------EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred CCCCEEEEecCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 456999999987432 1222 22222 3466667777777788888888755
No 164
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=30.06 E-value=71 Score=28.31 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhCCeEE-ech-hHhhcccccccccccccccCChhH
Q 025181 147 ELCQKYSDACINLCHELGVKVV-DLF-TAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~v-D~~-~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
+...+..+.++++|+++++.++ +-+ +.-... -.||+|+.++-
T Consensus 244 ~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~-------gAdGVHLGQeD 287 (437)
T PRK12290 244 ADLEQQIIRAIALGREYNAQVFINDYWQLAIKH-------QAYGVHLGQED 287 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHc-------CCCEEEcChHH
Confidence 3455666677888998887764 332 222222 26899998764
No 165
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.10 E-value=90 Score=26.91 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHH-----HhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHL-----KSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i-----~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+++..++++-+.+ .+.-|++.+|+..|.-+.-+..+.......+. -...-.+...-.++++|+++|++++.-
T Consensus 238 PeVKsr~Rq~~re~a~~rm~~~Vp~AdvVItNPTH~AVAlkY~~~~~~AP~--VvAKG~d~~AlkIreiA~e~~Ipi~en 315 (363)
T COG1377 238 PEVKSRIRQMQREIARRRMMSDVPKADVVITNPTHYAVALKYDPEKMPAPV--VVAKGVDLVALKIREIAKEHGIPIIEN 315 (363)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCCCEEeeCcCceeeeeeeccccCCCCE--EEEeCCcHHHHHHHHHHHHcCCceecC
Confidence 34444555544433 23349999999888754333222111111111 111113445566889999999999865
Q ss_pred hhH---hhcccccccccccccccCChhHHHHHHHHHHHHHHhccc
Q 025181 171 FTA---IQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLKQAEW 212 (256)
Q Consensus 171 ~~~---~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~~~~ 212 (256)
-.. +..... .| -+-.++=|+.+|+.+.-..+-..|
T Consensus 316 ppLARaLY~~~~------v~-~~IP~e~y~aVaevL~~V~~~~~~ 353 (363)
T COG1377 316 PPLARALYRQVE------VG-QQIPEELYKAVAEVLAYVYQLKNW 353 (363)
T ss_pred hHHHHHHHHhcC------cc-ccCCHHHHHHHHHHHHHHHHhhhh
Confidence 433 211111 11 234466688888877665554334
No 166
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.01 E-value=2.7e+02 Score=21.52 Aligned_cols=64 Identities=9% Similarity=0.147 Sum_probs=38.3
Q ss_pred cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC--
Q 025181 37 KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSC-- 114 (256)
Q Consensus 37 ~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~-- 114 (256)
.+++...| .......+...+. ..+||+|.+++-. ......+.++++.+++..+
T Consensus 110 G~~vi~lG-~~~p~~~l~~~~~-------~~~~d~v~lS~~~-----------------~~~~~~~~~~i~~lr~~~~~~ 164 (201)
T cd02070 110 GFEVIDLG-RDVPPEEFVEAVK-------EHKPDILGLSALM-----------------TTTMGGMKEVIEALKEAGLRD 164 (201)
T ss_pred CCEEEECC-CCCCHHHHHHHHH-------HcCCCEEEEeccc-----------------cccHHHHHHHHHHHHHCCCCc
Confidence 46666655 2233333333332 3578988887632 2224578889999988866
Q ss_pred CceEEEEcCCC
Q 025181 115 ATRIIFLSTPP 125 (256)
Q Consensus 115 ~~~vi~~~~~p 125 (256)
+.+|++-+.+.
T Consensus 165 ~~~i~vGG~~~ 175 (201)
T cd02070 165 KVKVMVGGAPV 175 (201)
T ss_pred CCeEEEECCcC
Confidence 66666665543
No 167
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.93 E-value=94 Score=28.85 Aligned_cols=105 Identities=8% Similarity=0.034 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHh------hcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEe
Q 025181 96 PEYVENMRRIATHLKS------LSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVD 169 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~------~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD 169 (256)
.+++...+++-+.+.+ .-|++.||+..|.-+.-+..+.......+. -..+-.++....++++|+++||++|.
T Consensus 529 PeIKaRRRqlqREmar~rRMm~~VpkADVVITNPTHyAVALKYdp~~~~APi--VVAKG~D~lAlrIReiAeE~gVPIVE 606 (646)
T PRK12773 529 RSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPI--VIAKGVDDFALLIIRIARENGVPTVE 606 (646)
T ss_pred HHHHHHHHHHHHHHHhhcchhhcCCCCcEEEECCCceEEEEEECCCCCCCCE--EEEEeCcHHHHHHHHHHHHcCCcEEE
Confidence 4555555555554442 238999999888654332222211111110 11222456677889999999999997
Q ss_pred chhHhhcccccccccccccccCChhHHHHHHHHHHHH
Q 025181 170 LFTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKV 206 (256)
Q Consensus 170 ~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~ 206 (256)
--..-.. -+.... .| --=.++=|+.+|+.|.-.
T Consensus 607 NpPLARA--LY~~ve-VG-q~IP~eLYeAVAeILa~V 639 (646)
T PRK12773 607 DRLQARG--LYEEVE-LG-AEVPQQFYRAIATILSRL 639 (646)
T ss_pred CHHHHHH--HHHcCC-CC-CcCCHHHHHHHHHHHHHH
Confidence 6543111 000000 11 122456678888777544
No 168
>PRK15029 arginine decarboxylase; Provisional
Probab=28.83 E-value=3.3e+02 Score=26.28 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=48.6
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCCCCCCC
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDSMGPHP 86 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~~ 86 (256)
+|+++=|-...+....+.....|.+.+.. .+++.. ..+ ..+....+.. ..++|+|++-+..=|.
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~-a~s---~~dAl~~l~~------~~~~DlVLLD~~LPd~----- 66 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIK-STS---FDDGFAILSS------NEAIDCLMFSYQMEHP----- 66 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEE-ECC---HHHHHHHHHh------cCCCcEEEEECCCCCC-----
Confidence 57888777642111122234444444442 233332 111 1233333322 1478999996543332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 87 SGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+.+ +.+.++++.+|+..++..||+++...
T Consensus 67 ---------dG~-~~~~ell~~IR~~~~~iPIIlLTar~ 95 (755)
T PRK15029 67 ---------DEH-QNVRQLIGKLHERQQNVPVFLLGDRE 95 (755)
T ss_pred ---------ccc-hhHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 122 14466788888766789999998655
No 169
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=28.40 E-value=1.1e+02 Score=23.81 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 92 HVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 92 ~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
..+++++...+.++++..++++...+|+++++.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 456899999999999999999999999999875
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.38 E-value=1.9e+02 Score=20.29 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=28.4
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC-CceEEEEcC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSC-ATRIIFLST 123 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~-~~~vi~~~~ 123 (256)
..+||+|.|++- ...+...++++++.+++..+ +..+++-+.
T Consensus 48 ~~~~d~V~iS~~-----------------~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 48 QEDVDVIGLSSL-----------------SGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HcCCCEEEEccc-----------------chhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 458999999764 24556778999999988855 445545443
No 171
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=28.13 E-value=3.1e+02 Score=21.88 Aligned_cols=43 Identities=9% Similarity=0.188 Sum_probs=28.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
...+.+++.+-..|. +.|...+...+..+++..++..+++++.
T Consensus 83 ~~ad~vIlVyDit~~--------------~Sf~~~~~~w~~~i~~~~~~~piilVgN 125 (232)
T cd04174 83 SDSDAVLLCFDISRP--------------ETVDSALKKWKAEIMDYCPSTRILLIGC 125 (232)
T ss_pred CCCcEEEEEEECCCh--------------HHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 467888888876653 4554445566666666557778777765
No 172
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=27.80 E-value=1.5e+02 Score=26.46 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=30.9
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCC-ChhHHHHH---HHHHHHHHHh-hcCCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHV-PLPEYVEN---MRRIATHLKS-LSCATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~li~~i~~-~~~~~~vi~~~~~ 124 (256)
..|+|||..|.-.- ++. ..+.+..| ++++...+.+ ..|+..|++++.|
T Consensus 176 daDiVVitAG~prk---------pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 176 DAEWALLIGAKPRG---------PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred cCCEEEECCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 45888888775321 222 23334433 6677778888 5789999998865
No 173
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.37 E-value=1.5e+02 Score=25.00 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=39.9
Q ss_pred EEEEcccccccccCCCChHHHHHHHhhc-cccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 9 FVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 9 i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
|+.+||++..|-.. +.-...|.+.+.+ ...+...++-.+....+.+.+.+.. ....|+|+...|+
T Consensus 160 Iltvsde~~~G~i~-Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~----~~~~DlIITTGGt 225 (312)
T PRK03604 160 VLVLSDSIAAGTKE-DRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWI----AEGYALIITTGGT 225 (312)
T ss_pred EEEECCcCCCCcEE-EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhh----hCCCCEEEECCCC
Confidence 89999999764322 2223334443432 3556666677777777777676653 2357988888664
No 174
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=27.22 E-value=2.8e+02 Score=20.99 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=35.7
Q ss_pred CCcEEEEEeccCCCCC----CCCC-----CCCC------CCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 68 QPSLVIVYVGGNDSMG----PHPS-----GLGP------HVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~----~~~~-----~~~~------~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
.-++|++++|++-..- |... .... -....-...|+++.++.+++++++..||-+..
T Consensus 24 ~~~iv~lCIGTDRstGDsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAIDA 94 (163)
T PF06866_consen 24 NREIVFLCIGTDRSTGDSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAIDA 94 (163)
T ss_pred CCCEEEEEECCCCCccccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEEC
Confidence 6689999999875421 1100 0000 01124466799999999999888888877743
No 175
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=27.16 E-value=2e+02 Score=20.71 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechh
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~ 172 (256)
+..+.++++.++. +...++++.-.. ++.+.....-..++.+++++|+.++-+..
T Consensus 54 Rp~l~~ll~~~~~--g~vd~vvv~~ld------------------Rl~R~~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIEDIEA--GKIDIVIVKDMS------------------RLGRNYLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHHHHHc--CCCCEEEEeccc------------------hhccCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4577888887776 556666665332 22222344445555666666988887754
No 176
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=27.14 E-value=2.2e+02 Score=23.69 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHH---HHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVE---NMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..+.++||+..|.+--. ....++-..+ -++.++..+-+..|++.+++++.|-
T Consensus 86 sa~S~lvIiTAGarq~~--------gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV 140 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSE--------GESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV 140 (332)
T ss_pred cCCCcEEEEecCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch
Confidence 44669999999976531 1122333333 3566777777778999999998773
No 177
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=27.13 E-value=1e+02 Score=26.42 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHH-----hhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLK-----SLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~-----~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+. +.-|++.||+..|.-+.-+..+.......+. -..+-.+.....++++|+++||+++.-
T Consensus 231 P~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y~~~~~~aP~--vvakG~~~~A~~I~~~A~~~~vPi~~~ 308 (347)
T TIGR00328 231 PEVKGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPV--VVAKGVDELALKIKEIARENNVPIVEN 308 (347)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEeeCcHHHHHHHHHHHHcCCCEEeC
Confidence 444455555554443 2238999999888654322222111000010 112223556677889999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVL 207 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l 207 (256)
-..-.. -+......+ --.++-|+.+|+.+.-..
T Consensus 309 ~~LAr~--Ly~~~~~g~--~IP~~ly~aVA~il~~v~ 341 (347)
T TIGR00328 309 PPLARA--LYRQVEIGQ--EIPPELYKAVAEVLAYVY 341 (347)
T ss_pred HHHHHH--HHHcCCCCC--cCCHHHHHHHHHHHHHHH
Confidence 543211 000000011 224667888888776443
No 178
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.02 E-value=40 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCCceEEEEcCC
Q 025181 102 MRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 102 l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
=+..++.++...|...+.++...
T Consensus 269 kd~a~E~~~a~spE~e~~~lnn~ 291 (315)
T COG4030 269 KDRAFEVLSAVSPETEIYILNNS 291 (315)
T ss_pred HHHHHHHHHhhCcccceecccCC
Confidence 34566666676677777777643
No 179
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=26.99 E-value=3.6e+02 Score=22.20 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCce--EEEEcCCCCChhhhhcCCccchhhhhhh
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATR--IIFLSTPPVDEARINQGTSEIFSELVRT 145 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~--vi~~~~~p~~~~~~~~~~~~~~~~~~~~ 145 (256)
.-.+++|.+|---+ +++-+++ .+.|.+.|+.+.+. ++.+ .++++.-|-.+.. ...
T Consensus 138 ~Gkw~LiYFGFThC---------PDICPdE-LeKm~~~Vd~i~~~-~~~~~~PlFIsvDPeRD~~------------~~~ 194 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHC---------PDICPDE-LEKMSAVVDEIEAK-PGLPPVPLFISVDPERDSV------------EVV 194 (280)
T ss_pred ccceEEEEecccCC---------CCcChHH-HHHHHHHHHHHhcc-CCCCccceEEEeCcccCCH------------HHH
Confidence 44788888885432 3333454 45567777777765 3333 3444554432221 122
Q ss_pred HHHHHHH----------HHHHHHHHHHhCCeE
Q 025181 146 NELCQKY----------SDACINLCHELGVKV 167 (256)
Q Consensus 146 ~~~~~~~----------n~~l~~~~~~~~v~~ 167 (256)
.+.+.+| .++++++|+++.|.|
T Consensus 195 ~eY~~eF~pkllGLTGT~eqvk~vak~yRVYf 226 (280)
T KOG2792|consen 195 AEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYF 226 (280)
T ss_pred HHHHHhcChhhhcccCCHHHHHHHHHHhEEee
Confidence 3333333 356678888887744
No 180
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=26.97 E-value=3.4e+02 Score=21.99 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHh
Q 025181 95 LPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAI 174 (256)
Q Consensus 95 ~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~ 174 (256)
.++..+-+..+...+.+ .+.++|++.-... .+...... ..+...-...+..+-..++.+|.++++.+|=.+...
T Consensus 115 ~~~l~~~L~~l~~~l~~--~~ikLIVIDSIaa---lfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~ 188 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSE--SKIKLIVIDSIAA---LFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVT 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEEEEEETSSH---HHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEC
T ss_pred HHHHHHHHHHHHhhccc--cceEEEEecchHH---HHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceee
Confidence 35555555555555544 5688888876652 12111110 111222245567777889999999999988666655
Q ss_pred hc
Q 025181 175 QK 176 (256)
Q Consensus 175 ~~ 176 (256)
..
T Consensus 189 ~~ 190 (256)
T PF08423_consen 189 TK 190 (256)
T ss_dssp SS
T ss_pred ec
Confidence 43
No 181
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=26.91 E-value=1.7e+02 Score=25.60 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCC-CChhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPH-VPLPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~-~~~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
..|+||+..|.-.- ++ ...+.+..| ++++...+.+.. |+..|++++.|
T Consensus 120 daDIVVitAG~prk---------pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 120 DADWALLIGAKPRG---------PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CCCEEEECCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 45888888875321 22 223334433 667777777755 88888888855
No 182
>PRK05595 replicative DNA helicase; Provisional
Probab=26.79 E-value=2e+02 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|+++++++|=+.+.
T Consensus 334 ~~v~~is~~LK~lAke~~i~vi~lsQL 360 (444)
T PRK05595 334 QEVSEISRSIKALAKEMECPVIALSQL 360 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 456788899999999999999977554
No 183
>PRK00549 competence damage-inducible protein A; Provisional
Probab=26.53 E-value=1.7e+02 Score=25.79 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=41.1
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||-+..|-- .+.=...|++.+. ..+++.....-++....+...+.... ...|+||+..|.
T Consensus 4 ~ii~~G~Ell~G~i-~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~-----~~~DlVItTGGl 69 (414)
T PRK00549 4 EIIAVGTELLLGQI-VNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAE-----ERSDLIITTGGL 69 (414)
T ss_pred EEEEecccccCCce-eEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhc-----cCCCEEEECCCC
Confidence 58899999886432 2222334444443 23566666777777777777666543 467999998664
No 184
>PLN02199 shikimate kinase
Probab=26.36 E-value=2.5e+02 Score=23.68 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechhHhhc
Q 025181 102 MRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFTAIQK 176 (256)
Q Consensus 102 l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~~~~~ 176 (256)
+++.-+.++...++..|++++++..+.... .+.+++..+++|||....+..
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTV------------------------gr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTV------------------------GKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHHH------------------------HHHHHHHhCCCEEehHHHHHH
Confidence 777778888877889999999887544322 124455668888888766544
No 185
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.30 E-value=2.4e+02 Score=23.89 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHhhc-CCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVEN---MRRIATHLKSLS-CATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~li~~i~~~~-~~~~vi~~~~~ 124 (256)
...|+||+..|.-... .....+.+..| ++.+...+.+.. |+..+++++.|
T Consensus 77 ~~aDiVI~tAG~~~~~--------~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 77 KDVDVAILVGAMPRKE--------GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred CCCCEEEEeCCcCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 3679999999865421 11224444444 456667777775 68888888754
No 186
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=26.25 E-value=2.5e+02 Score=24.75 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|+++++++|=+.+.
T Consensus 328 ~~i~~i~~~Lk~lA~e~~i~vi~lsql 354 (434)
T TIGR00665 328 QEVSEISRSLKALAKELNVPVIALSQL 354 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 346677888999999999999876553
No 187
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=26.24 E-value=3.8e+02 Score=22.18 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCeEEechhHhhccc----ccccccccccccCChhHHHHHHHHHHHHHHh
Q 025181 151 KYSDACINLCHELGVKVVDLFTAIQKRD----DWKNACFTDGIHLSEEGSKIVVAEILKVLKQ 209 (256)
Q Consensus 151 ~~n~~l~~~~~~~~v~~vD~~~~~~~~~----~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~~ 209 (256)
++.+.+++.|..+++++||+...+.+.- +.....-+-..|--..-|..--+++-=+|+.
T Consensus 70 elr~~l~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~~pG~~~~ld~~Yf~RIeAiefal~h 132 (269)
T PRK05339 70 ELREILEERCAEFGIPCIDILGPLIAPLEQELGLKPTPEPGRTHGLDEEYFKRIEAIEFALAH 132 (269)
T ss_pred HHHHHHHHHHHHcCCCEEeccHHHHHHHHHHHCcCCCCCCCcccCCcHHHHHHHHHHHHHHHc
Confidence 4456677889999999999999865421 1111111333555555666666666655553
No 188
>PRK06223 malate dehydrogenase; Reviewed
Probab=26.07 E-value=1.3e+02 Score=24.99 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=29.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++.+|...- . .....+.+. .-+.++++.+.+..|+..+++++.|
T Consensus 69 ~~aDiVii~~~~p~~-----~---~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 69 AGSDVVVITAGVPRK-----P---GMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCCEEEECCCCCCC-----c---CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 346899998885321 0 111123333 3456677777777788777777655
No 189
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=25.85 E-value=2.3e+02 Score=22.96 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
...|+|++..|.-..- .....+... .-+.++++.+++..|++.+++++.|-
T Consensus 69 ~~aDiVv~t~~~~~~~--------g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~ 122 (263)
T cd00650 69 KDADVVIITAGVGRKP--------GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV 122 (263)
T ss_pred CCCCEEEECCCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 3568888888753221 111223333 34667778888888999998887553
No 190
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=25.81 E-value=2.3e+02 Score=21.31 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
...+.+++.+..+|. +.|..-++..+..+++..++..+++++.
T Consensus 71 ~~a~~~ilvyd~~~~--------------~Sf~~~~~~w~~~i~~~~~~~piilvgn 113 (176)
T cd04133 71 RGADVFVLAFSLISR--------------ASYENVLKKWVPELRHYAPNVPIVLVGT 113 (176)
T ss_pred CCCcEEEEEEEcCCH--------------HHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 356889999888774 4444433566666766667788888874
No 191
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.64 E-value=4.3e+02 Score=22.66 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCChhHHHHHHHHHHH-HHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEe
Q 025181 91 PHVPLPEYVENMRRIAT-HLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVD 169 (256)
Q Consensus 91 ~~~~~~~~~~~l~~li~-~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD 169 (256)
.+..-+.|...++.++. .++...|+..|+-.+.-.....+.. +............+.+.+++..++.+++=
T Consensus 216 ~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~--------~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~ 287 (340)
T COG0123 216 PGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLG--------RLNLTEEGYAKIGRAVRKLAEGYGGPVVA 287 (340)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccc--------eeecCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 45566889999999665 5555557766666555443333222 12234455667777778888776666554
Q ss_pred c
Q 025181 170 L 170 (256)
Q Consensus 170 ~ 170 (256)
+
T Consensus 288 v 288 (340)
T COG0123 288 V 288 (340)
T ss_pred E
Confidence 4
No 192
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.60 E-value=2.4e+02 Score=20.04 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=26.9
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 71 LVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 71 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
++++.+|+=| +.-.+.++.+.+.+++..|+..|.+.-
T Consensus 3 illv~fGS~~---------------~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 3 ILLVSFGTSY---------------PTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred EEEEeCCCCC---------------HHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 5667777554 355667888888888888888777653
No 193
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=25.42 E-value=2.5e+02 Score=20.52 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|++++.+-.+|. +.+..-....+..+++..++.++++++.-
T Consensus 68 ~~~d~~ilv~d~~~~--------------~s~~~~~~~~~~~i~~~~~~~piilv~nK 111 (174)
T smart00174 68 PDTDVFLICFSVDSP--------------ASFENVKEKWYPEVKHFCPNTPIILVGTK 111 (174)
T ss_pred CCCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 356888888876653 33433333456666666678888888654
No 194
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=25.39 E-value=1e+02 Score=21.55 Aligned_cols=27 Identities=4% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 99 VENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 99 ~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
.....++++.++.++.+.+|+++.-..
T Consensus 51 ~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 51 EDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred chhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 456678999999999999999998743
No 195
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.36 E-value=4.4e+02 Score=22.63 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=21.9
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEc
Q 025181 70 SLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLS 122 (256)
Q Consensus 70 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~ 122 (256)
=.|++.+|.|-..- ...+.++-..+++. +.+|++..
T Consensus 139 p~Vil~vGVNG~GK---------------TTTIaKLA~~l~~~--g~~VllaA 174 (340)
T COG0552 139 PFVILFVGVNGVGK---------------TTTIAKLAKYLKQQ--GKSVLLAA 174 (340)
T ss_pred cEEEEEEecCCCch---------------HhHHHHHHHHHHHC--CCeEEEEe
Confidence 57888899998732 22445555555553 46666653
No 196
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=25.14 E-value=1.2e+02 Score=28.08 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=34.4
Q ss_pred EEEeccCCCCCCC-----CC---CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 73 IVYVGGNDSMGPH-----PS---GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 73 ii~~G~ND~~~~~-----~~---~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
++++|+||+.... .+ +.........+.+.++.+++.+++. ++.+-+++-..
T Consensus 448 f~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~--g~~v~vCGe~A 506 (575)
T PRK11177 448 FFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAE--GKWTGMCGELA 506 (575)
T ss_pred EEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeCCCC
Confidence 6779999996621 11 1123344577888889999988884 57888887654
No 197
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=24.34 E-value=2e+02 Score=19.11 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhh
Q 025181 95 LPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARI 131 (256)
Q Consensus 95 ~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~ 131 (256)
...+++-+++....+++.+|+..|++=....+....+
T Consensus 29 SagvR~fvEk~Y~~lKkaNP~lPILIREcSgVqPrl~ 65 (97)
T KOG3446|consen 29 SAGVREFVEKFYVNLKKANPDLPILIRECSGVQPRLW 65 (97)
T ss_pred chhHHHHHHHhhhhhhhcCCCCcEeehhhcCCchHHH
Confidence 3556777788888899999999998876665544433
No 198
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.25 E-value=2.4e+02 Score=23.57 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHHHhhcCCceEEEEcCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYV---ENMRRIATHLKSLSCATRIIFLSTP 124 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~li~~i~~~~~~~~vi~~~~~ 124 (256)
...|+|++..|..-.. .....+... .-++++++.+++..++..+++++.|
T Consensus 66 ~~aDiViita~~~~~~--------~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP 118 (308)
T cd05292 66 KGADVVVITAGANQKP--------GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNP 118 (308)
T ss_pred CCCCEEEEccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 3568999999865321 111122233 3467788888888888888888654
No 199
>PRK06749 replicative DNA helicase; Provisional
Probab=24.23 E-value=3.3e+02 Score=24.12 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|++++|++|=+.+.
T Consensus 323 ~ei~~isr~LK~lAkel~vpVi~lsQL 349 (428)
T PRK06749 323 QEISEISRKLKLLARELNVCVVALSQL 349 (428)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 457788999999999999999966544
No 200
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=24.18 E-value=3.8e+02 Score=24.22 Aligned_cols=42 Identities=24% Similarity=0.544 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhCCeEE-echhHhhcccccccccccccccCChhH
Q 025181 148 LCQKYSDACINLCHELGVKVV-DLFTAIQKRDDWKNACFTDGIHLSEEG 195 (256)
Q Consensus 148 ~~~~~n~~l~~~~~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 195 (256)
.+.+..+.++++|+++++.++ +-+..+... +-.||+|+++..
T Consensus 335 ~~~~~a~~l~~~~~~~~~~liind~~~lA~~------~~adGvHl~~~d 377 (502)
T PLN02898 335 EFIEEAKACLAICRSYGVPLLINDRVDVALA------CDADGVHLGQSD 377 (502)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcChHHHHHh------cCCCEEEeChHh
Confidence 345555667778888887654 332222211 125999998764
No 201
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=24.11 E-value=3.3e+02 Score=20.80 Aligned_cols=59 Identities=14% Similarity=-0.030 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCeEEechhHhhcccccccccccccccCChhHHHHHHH----HHHHHHHh
Q 025181 151 KYSDACINLCHELGVKVVDLFTAIQKRDDWKNACFTDGIHLSEEGSKIVVA----EILKVLKQ 209 (256)
Q Consensus 151 ~~n~~l~~~~~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~----~l~~~l~~ 209 (256)
.+.+++..+.......+||-+.............-.|..||.-+..-++|+ .+...|.+
T Consensus 78 a~~~ai~~l~~~~~~v~iD~~~~~~~~~~~~~~~KaD~~~~~VaAASIvAKv~RD~~m~~l~~ 140 (179)
T cd07182 78 AMRRAVEGLPVKPDYVLVDGNRLPPLPIPQEAIVKGDAKSASIAAASILAKVTRDRLMIELDK 140 (179)
T ss_pred HHHHHHHhCCCCCCEEEECCcCCCCCCCCeEEEeccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443222234677776432211111111126999999999999994 45555554
No 202
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=23.90 E-value=91 Score=20.27 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=16.8
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhccccE
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYARKADI 40 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~~~~v 40 (256)
.+++|++|-|.-. +.+++++..++...+.
T Consensus 39 pK~VLViGaStGy------GLAsRIa~aFg~gA~T 67 (78)
T PF12242_consen 39 PKKVLVIGASTGY------GLASRIAAAFGAGADT 67 (78)
T ss_dssp -SEEEEES-SSHH------HHHHHHHHHHCC--EE
T ss_pred CceEEEEecCCcc------cHHHHHHHHhcCCCCE
Confidence 3679999999554 5666677666544333
No 203
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=23.88 E-value=1.8e+02 Score=22.00 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 68 QPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 68 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
+|+++++++..+. ....+ +++.+++..|.+.++-++..-
T Consensus 1 ~p~lvi~f~s~~~------------------~~~~~-i~~~l~~~~p~~~iiG~st~g 39 (198)
T PF08495_consen 1 RPDLVILFCSPEY------------------DEEAK-ILEALRERLPDAPIIGCSTAG 39 (198)
T ss_pred CCEEEEEEecchh------------------hhhHH-HHHHHHHHCCCCcEEEEccCc
Confidence 5788888775442 33444 778888888888888876653
No 204
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=23.84 E-value=3e+02 Score=21.42 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCC
Q 025181 67 IQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPP 125 (256)
Q Consensus 67 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p 125 (256)
..||+|++-+..-+. + -..+++.+++..+...|++++...
T Consensus 49 ~~pdlvllD~~mp~~--------------~-----gle~~~~l~~~~~~~~iivls~~~ 88 (225)
T PRK10046 49 FKPGLILLDNYLPDG--------------R-----GINLLHELVQAHYPGDVVFTTAAS 88 (225)
T ss_pred cCCCEEEEeCCCCCC--------------c-----HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 578999996654332 1 123445555555667888887654
No 205
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=23.65 E-value=2.5e+02 Score=26.51 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=33.5
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccCCC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGNDS 81 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~ 81 (256)
..++++-||.-.. +... +.+..+ .+.++...+.=|..+......++ ..+|++++++.|.+..
T Consensus 574 ~~~~L~tGD~~~~------~E~~-l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~-------~v~P~~aiiS~g~~N~ 636 (662)
T TIGR00361 574 GNSWLLTGDLEAE------GEQE-VMRVFPNIKADVLQVGHHGSKTSTSEELIQ-------QVQPKVAIISAGRNNR 636 (662)
T ss_pred CeeEEEecCCCHH------HHHH-HHhcccCcCccEEEeCCCCCCCCChHHHHH-------hcCCCEEEEECCCCCC
Confidence 4467777777443 2222 222221 24567666665554322222222 2479999999997654
No 206
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=23.62 E-value=2.2e+02 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEcC
Q 025181 97 EYVENMRRIATHLKSLSCATRIIFLST 123 (256)
Q Consensus 97 ~~~~~l~~li~~i~~~~~~~~vi~~~~ 123 (256)
-...|+++.++.+++.+|+..||-+..
T Consensus 44 VHA~NL~e~l~~I~~~~~~~~iIAIDA 70 (140)
T TIGR02841 44 VHAKNLEEKLKIIKKKHPNPFIIAIDA 70 (140)
T ss_pred cccccHHHHHHHHHHhCCCCeEEEEEC
Confidence 356789999999999888888877743
No 207
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=23.44 E-value=85 Score=25.48 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=11.3
Q ss_pred CCceEEEEcccccccc
Q 025181 5 ARPQFVLFGSSIVQLS 20 (256)
Q Consensus 5 ~~~~i~~iGDS~t~g~ 20 (256)
.++.|+++|||+..-.
T Consensus 178 ~R~NvlLlGDslgD~~ 193 (246)
T PF05822_consen 178 KRTNVLLLGDSLGDLH 193 (246)
T ss_dssp T--EEEEEESSSGGGG
T ss_pred cCCcEEEecCccCChH
Confidence 3567999999988733
No 208
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.95 E-value=3.6e+02 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhCCeEEechh
Q 025181 150 QKYSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 150 ~~~n~~l~~~~~~~~v~~vD~~~ 172 (256)
++..+.++++.+++++++.|...
T Consensus 272 ~e~~~~~~~~~~e~glPv~Dp~r 294 (301)
T PF07755_consen 272 EEAKAAIERIEEELGLPVTDPLR 294 (301)
T ss_dssp HHHHHHHHHHHHHH-S-EE-HHH
T ss_pred HHHHHHHHHHHHHHCCCeeeccc
Confidence 34556677788889999999864
No 209
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=22.65 E-value=3.4e+02 Score=20.43 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCceEEEEcC------CCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q 025181 96 PEYVENMRRIATHLKSLSCATRIIFLST------PPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHE 162 (256)
Q Consensus 96 ~~~~~~l~~li~~i~~~~~~~~vi~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~ 162 (256)
+...+.+.++++.+++. ...+|+++. .|... ........+...|+.+...|.+
T Consensus 97 ~~~~~~i~~~l~~l~~~--~~~lViVsnEVG~GiVP~~~------------~~R~yrd~lG~lnq~lA~~Ad~ 155 (167)
T PF02283_consen 97 EDILEEIERLLEALRER--NADLVIVSNEVGWGIVPMDP------------LTRRYRDLLGRLNQRLAARADE 155 (167)
T ss_dssp HHHHHHHHHHHHHHHH----SEEEEEEE---SS---SSH------------HHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHcc--CCCEEEEEcCCCCCCCCCCH------------HHHHHHHHHHHHHHHHHHHcCE
Confidence 56777888888888884 356666643 22211 1114556677888888777653
No 210
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.23 E-value=1.5e+02 Score=25.54 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHH-----hhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEec
Q 025181 96 PEYVENMRRIATHLK-----SLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDL 170 (256)
Q Consensus 96 ~~~~~~l~~li~~i~-----~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~ 170 (256)
.+.+...+++-+.+. +.-|++.||+..|.-+.-...+.......+. -..+-.+.....++++|+++|++++.-
T Consensus 238 P~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y~~~~~~aP~--vvakg~~~~A~~i~~~A~~~~vpi~~~ 315 (359)
T PRK05702 238 PEVKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPV--VVAKGVDEVALKIREIAREHNVPIVEN 315 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCE--EEEeeCcHHHHHHHHHHHHcCCCEEeC
Confidence 344444444444432 2238999999888654322222110000010 112223456677889999999999976
Q ss_pred hhHhhcccccccccccccccCChhHHHHHHHHHHHHHH
Q 025181 171 FTAIQKRDDWKNACFTDGIHLSEEGSKIVVAEILKVLK 208 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~ia~~l~~~l~ 208 (256)
-..-.. -+......+ --.++=|+.+|+.+.-..+
T Consensus 316 ~~LAr~--Ly~~~~~g~--~Ip~~~~~aVA~il~~v~~ 349 (359)
T PRK05702 316 PPLARA--LYATVEIGQ--EIPEELYKAVAEVLAYVYQ 349 (359)
T ss_pred HHHHHH--HHHcCCCCC--ccCHHHHHHHHHHHHHHHH
Confidence 544211 000000011 2245667777776654433
No 211
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=22.15 E-value=48 Score=20.90 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.1
Q ss_pred CceEEEEccc-ccc
Q 025181 6 RPQFVLFGSS-IVQ 18 (256)
Q Consensus 6 ~~~i~~iGDS-~t~ 18 (256)
..++++|||| .+.
T Consensus 21 ~~~~~~VGD~~~~D 34 (75)
T PF13242_consen 21 PSRCVMVGDSLETD 34 (75)
T ss_dssp GGGEEEEESSTTTH
T ss_pred HHHEEEEcCCcHhH
Confidence 3579999999 554
No 212
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=21.96 E-value=2e+02 Score=27.69 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=32.6
Q ss_pred EEEeccCCCCCCC-----CC---CCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 73 IVYVGGNDSMGPH-----PS---GLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 73 ii~~G~ND~~~~~-----~~---~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
++++|+||..+.. .+ ..........+.+-+..+++..++ .+..|-+++-..-
T Consensus 614 F~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~--~g~~v~vCGe~a~ 673 (748)
T PRK11061 614 FISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQ--HGLPVSLCGEMAG 673 (748)
T ss_pred EEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhh--CcCEEEEcCCccc
Confidence 6789999995421 11 111223345666777777777766 5688988876543
No 213
>PRK13808 adenylate kinase; Provisional
Probab=21.95 E-value=2.3e+02 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=14.6
Q ss_pred HHHHHhCCeEEechhHhhc
Q 025181 158 NLCHELGVKVVDLFTAIQK 176 (256)
Q Consensus 158 ~~~~~~~v~~vD~~~~~~~ 176 (256)
.+++.+++.+++..+.+..
T Consensus 19 ~LA~~ygl~~is~gdlLR~ 37 (333)
T PRK13808 19 RLVQQYGIVQLSTGDMLRA 37 (333)
T ss_pred HHHHHhCCceecccHHHHH
Confidence 5577889999998777654
No 214
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=21.89 E-value=2.5e+02 Score=24.78 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=40.8
Q ss_pred eEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 8 QFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 8 ~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.|+.+||-+..|-- .+.=...|++.+. ..+++.-...-++....+...+.+.. .+.|+||+..|.
T Consensus 4 ~Ii~tGdEll~G~i-~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~-----~~~DlVIttGGl 69 (413)
T TIGR00200 4 EIISVGDELLLGQI-VNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIAS-----ERADVLIFNGGL 69 (413)
T ss_pred EEEEECccccCCcE-EEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHh-----cCCCEEEEcCCC
Confidence 47889999886332 1222223333332 23566667777888877777776654 467999998664
No 215
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=21.89 E-value=1.9e+02 Score=22.71 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
..+||++++-+++-+. +=.++++.+++..|..+|++++...-
T Consensus 44 ~~~pdvvl~Dl~mP~~-------------------~G~e~~~~l~~~~p~~~vvvlt~~~~ 85 (211)
T COG2197 44 ELKPDVVLLDLSMPGM-------------------DGLEALKQLRARGPDIKVVVLTAHDD 85 (211)
T ss_pred hcCCCEEEEcCCCCCC-------------------ChHHHHHHHHHHCCCCcEEEEeccCC
Confidence 4689999998776553 11345556667779999999987754
No 216
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.79 E-value=1.6e+02 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=10.8
Q ss_pred CCCCcEEEEEec
Q 025181 66 PIQPSLVIVYVG 77 (256)
Q Consensus 66 ~~~pd~vii~~G 77 (256)
..+||+|++.+|
T Consensus 155 ~s~~dil~VglG 166 (243)
T PRK03692 155 ASGAKIVTVAMG 166 (243)
T ss_pred hcCCCEEEEECC
Confidence 578999999998
No 217
>PRK03673 hypothetical protein; Provisional
Probab=21.68 E-value=2.2e+02 Score=24.97 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=44.9
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhh-ccccEeecCCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEeccC
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYA-RKADILLRGYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGGN 79 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~N 79 (256)
+-.|+.+||=+..|-- .+.=...|++.+. ..+++......++....+...+...+ .+.|+||+..|.-
T Consensus 3 ~v~Iis~GdEll~G~i-~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~-----~~~DlVI~tGGlG 71 (396)
T PRK03673 3 RVEMLSTGDEVLHGQI-VDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERS-----QHADVLIVNGGLG 71 (396)
T ss_pred EEEEEEecccCCCCeE-EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHh-----ccCCEEEEcCCCC
Confidence 3468999999885332 2222333444333 24667777888888888888887764 4679999998763
No 218
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=21.63 E-value=4.1e+02 Score=21.90 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEechh
Q 025181 93 VPLPEYVENMRRIATHLKSLSCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVDLFT 172 (256)
Q Consensus 93 ~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD~~~ 172 (256)
.+++...+.++++.+.+... +.-++++-...................+...+...++...+.++|+++|+.+--..+
T Consensus 127 ~~~~~h~~~F~~la~~L~g~---t~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~tC~E 203 (266)
T PF08902_consen 127 YTVDYHLEAFERLAEALAGY---TDRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLYTCAE 203 (266)
T ss_pred CCHHHHHHHHHHHHHHHhcc---CCEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEeCcC
Confidence 45677777888888777754 333333333322211111000000011233456677888888999999986654433
No 219
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.17 E-value=3.2e+02 Score=23.84 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=36.5
Q ss_pred CceEEEEcccccccccCCCChHHHHHHHhhc-cccEeec-CCCCCchHHHHHHhhhhCCCCCCCCCcEEEEEecc
Q 025181 6 RPQFVLFGSSIVQLSFSNGGWGAILSDIYAR-KADILLR-GYYGWNSRRALQVLDQVFPKDAPIQPSLVIVYVGG 78 (256)
Q Consensus 6 ~~~i~~iGDS~t~g~~~~~~~~~~l~~~~~~-~~~v~n~-g~~G~~s~~~~~~~~~~~~~~~~~~pd~vii~~G~ 78 (256)
.++++++||.... ..++...+.+.+.. .+.+..+ ++.+..+........+.. ...++|.||-..|+
T Consensus 49 ~~~~lvv~~~~~~----~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~---r~~~~D~IiavGGG 116 (395)
T PRK15454 49 LKHLFVMADSFLH----QAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL---RESGCDGVIAFGGG 116 (395)
T ss_pred CCEEEEEcCcchh----hCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH---HhcCcCEEEEeCCh
Confidence 4688888886543 23555566666652 3444333 455554444344333333 24688987766664
No 220
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.84 E-value=6.3e+02 Score=22.84 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=29.8
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCCceEEEEcCCCC
Q 025181 66 PIQPSLVIVYVGGNDSMGPHPSGLGPHVPLPEYVENMRRIATHLKSLSCATRIIFLSTPPV 126 (256)
Q Consensus 66 ~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~li~~i~~~~~~~~vi~~~~~p~ 126 (256)
..+||+|.++.= . . ......++++.+|+..|++.||+-++-+.
T Consensus 61 ~~~pdvVgis~~-----t------------~-~~~~a~~~~~~~k~~~P~~~iV~GG~h~t 103 (497)
T TIGR02026 61 AHCPDLVLITAI-----T------------P-AIYIACETLKFARERLPNAIIVLGGIHPT 103 (497)
T ss_pred hcCcCEEEEecC-----c------------c-cHHHHHHHHHHHHHHCCCCEEEEcCCCcC
Confidence 358999988631 0 1 12345678888898889999988877543
No 221
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=20.53 E-value=69 Score=25.86 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcccCCCCCCCCCC--CccccCCCCCccccCCCcccCCCCccccccc
Q 025181 200 VAEILKVLKQAEWKPSLHWKSMP--TEFSEDSPYDLVAASGERTLNPSDWTFHREI 253 (256)
Q Consensus 200 a~~l~~~l~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (256)
-+.+...|++..|+|.+.+..+= .+-+.-....|+-.++-| ||-++-.|+.||
T Consensus 146 yE~l~ekikep~WaPDfGp~~~~PtaG~t~iGaR~pLiAfNvN-L~t~n~eI~kkI 200 (302)
T COG3643 146 YEGLKEKIKEPKWAPDFGPREVHPTAGVTAIGARMPLIAFNVN-LDTSNMEIGKKI 200 (302)
T ss_pred hhhHHHHhcCcccCCCCCccccCCCCcceEeecccceEEEEec-cCcccchHHHHH
Confidence 46677888888899999988653 455666777888888877 888888887765
No 222
>PRK09165 replicative DNA helicase; Provisional
Probab=20.28 E-value=4e+02 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|++++|++|=+.+.
T Consensus 366 ~ev~~is~~LK~lAkel~ipVi~lsQL 392 (497)
T PRK09165 366 QEISEITQGLKALAKELNIPVIALSQL 392 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeecc
Confidence 347888999999999999999977654
No 223
>PRK06321 replicative DNA helicase; Provisional
Probab=20.27 E-value=3.7e+02 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhCCeEEechhH
Q 025181 147 ELCQKYSDACINLCHELGVKVVDLFTA 173 (256)
Q Consensus 147 ~~~~~~n~~l~~~~~~~~v~~vD~~~~ 173 (256)
..+....+.++.+|++++|++|=+.+.
T Consensus 362 ~ei~~Isr~LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 362 TEISEISRMLKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 457788999999999999999955443
No 224
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=4.4e+02 Score=22.50 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhh-cCCceEEEEcCCCCChhhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHhCCeEEe
Q 025181 91 PHVPLPEYVENMRRIATHLKSL-SCATRIIFLSTPPVDEARINQGTSEIFSELVRTNELCQKYSDACINLCHELGVKVVD 169 (256)
Q Consensus 91 ~~~~~~~~~~~l~~li~~i~~~-~~~~~vi~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~v~~vD 169 (256)
.+...+.|..--+++-+.+.+. .|.+.||.++......-..... ........+..+ ..+-.+.+.+++..+.++++-
T Consensus 154 SGlvr~dYfdWpk~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~-~~kf~S~~W~~e-Y~kRvd~~l~ia~~~~~~V~W 231 (354)
T COG2845 154 SGLVRDDYFDWPKAIPELLDKHPKPAAVVVMLGANDRQDFKVGDV-YEKFRSDEWTKE-YEKRVDAILKIAHTHKVPVLW 231 (354)
T ss_pred CCcccccccccHHHHHHHHHhcCCccEEEEEecCCCHHhcccCCe-eeecCchHHHHH-HHHHHHHHHHHhcccCCcEEE
Confidence 3444566665555555555555 4677777777765322111110 111112222222 333334444556667777764
Q ss_pred c
Q 025181 170 L 170 (256)
Q Consensus 170 ~ 170 (256)
+
T Consensus 232 v 232 (354)
T COG2845 232 V 232 (354)
T ss_pred e
Confidence 4
Done!